Citrus Sinensis ID: 038499
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | 2.2.26 [Sep-21-2011] | |||||||
| P99177 | 413 | Probable cysteine desulfu | yes | no | 0.574 | 0.847 | 0.256 | 3e-24 | |
| P63518 | 413 | Probable cysteine desulfu | yes | no | 0.574 | 0.847 | 0.256 | 3e-24 | |
| Q8NXH0 | 413 | Probable cysteine desulfu | yes | no | 0.574 | 0.847 | 0.256 | 4e-24 | |
| Q6GB11 | 413 | Probable cysteine desulfu | yes | no | 0.574 | 0.847 | 0.256 | 4e-24 | |
| Q6GIH2 | 413 | Probable cysteine desulfu | yes | no | 0.574 | 0.847 | 0.256 | 4e-24 | |
| Q5HHH0 | 413 | Probable cysteine desulfu | yes | no | 0.574 | 0.847 | 0.256 | 4e-24 | |
| Q8CTA4 | 413 | Probable cysteine desulfu | yes | no | 0.563 | 0.830 | 0.250 | 7e-23 | |
| Q5HQQ0 | 413 | Probable cysteine desulfu | yes | no | 0.563 | 0.830 | 0.250 | 7e-23 | |
| Q9K7A0 | 406 | Probable cysteine desulfu | yes | no | 0.571 | 0.857 | 0.258 | 3e-19 | |
| Q9XAD5 | 418 | Probable cysteine desulfu | yes | no | 0.619 | 0.901 | 0.227 | 1e-17 |
| >sp|P99177|CSD_STAAN Probable cysteine desulfurase OS=Staphylococcus aureus (strain N315) GN=csd PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 174/402 (43%), Gaps = 52/402 (12%)
Query: 69 FDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128
D +RL Y D TA+ ++ + N + + + N H +G T+ A
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARE 77
Query: 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP 188
+++ + + +IF GTTA+I + G A EE + V
Sbjct: 78 TVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDA-------------NVEEGDEIVVTE 123
Query: 189 HEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHH+N++ W+Q A + I + DG L+IE ++ + + K I+ + + SN
Sbjct: 124 MEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI----NDKTKIV-AIAHISN 178
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G +D ++IA + HQ+G D A + P++++D++ D Y S HK L GP
Sbjct: 179 VLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML-GPT 234
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
G+L + L Q P GG +++V+ ++ D+ + GTP + Q I
Sbjct: 235 GIGVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIAQAIG 288
Query: 365 AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424
A A E IG + I K E+ A E++ + I+I G +R +++FN+
Sbjct: 289 LAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL----- 343
Query: 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
+ +H VAT + D G+ R G CA P
Sbjct: 344 -------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain N315) (taxid: 158879) EC: 2EC: .EC: 8EC: .EC: 1EC: .EC: 7 |
| >sp|P63518|CSD_STAAM Probable cysteine desulfurase OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=csd PE=1 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 174/402 (43%), Gaps = 52/402 (12%)
Query: 69 FDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128
D +RL Y D TA+ ++ + N + + + N H +G T+ A
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPMQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARE 77
Query: 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP 188
+++ + + +IF GTTA+I + G A EE + V
Sbjct: 78 TVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDA-------------NVEEGDEIVVTE 123
Query: 189 HEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHH+N++ W+Q A + I + DG L+IE ++ + + K I+ + + SN
Sbjct: 124 MEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI----NDKTKIV-AIAHISN 178
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G +D ++IA + HQ+G D A + P++++D++ D Y S HK L GP
Sbjct: 179 VLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML-GPT 234
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
G+L + L Q P GG +++V+ ++ D+ + GTP + Q I
Sbjct: 235 GIGVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIAQAIG 288
Query: 365 AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424
A A E IG + I K E+ A E++ + I+I G +R +++FN+
Sbjct: 289 LAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL----- 343
Query: 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
+ +H VAT + D G+ R G CA P
Sbjct: 344 -------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain Mu50 / ATCC 700699) (taxid: 158878) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q8NXH0|CSD_STAAW Probable cysteine desulfurase OS=Staphylococcus aureus (strain MW2) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 174/402 (43%), Gaps = 52/402 (12%)
Query: 69 FDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128
D +RL Y D TA+ ++ + N + + + N H +G T+ A
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARE 77
Query: 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP 188
+++ + + +IF GTTA+I + G A EE + V
Sbjct: 78 TVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDA-------------NVEEGDEIVVTE 123
Query: 189 HEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHH+N++ W+Q A + I + DG L+IE ++ + + K I+ + + SN
Sbjct: 124 MEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI----NDKTKIV-AIAHISN 178
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G +D ++IA + HQ+G D A + P++++D++ D Y S HK L GP
Sbjct: 179 VLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML-GPT 234
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
G+L + L Q P GG +++V+ ++ D+ + GTP + Q I
Sbjct: 235 GIGVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIAQAIG 288
Query: 365 AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424
A A E IG + I K E+ A E++ + I+I G +R +++FN+
Sbjct: 289 LAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL----- 343
Query: 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
+ +H VAT + D G+ R G CA P
Sbjct: 344 -------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain MW2) (taxid: 196620) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q6GB11|CSD_STAAS Probable cysteine desulfurase OS=Staphylococcus aureus (strain MSSA476) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 174/402 (43%), Gaps = 52/402 (12%)
Query: 69 FDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128
D +RL Y D TA+ ++ + N + + + N H +G T+ A
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARE 77
Query: 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP 188
+++ + + +IF GTTA+I + G A EE + V
Sbjct: 78 TVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDA-------------NVEEGDEIVVTE 123
Query: 189 HEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHH+N++ W+Q A + I + DG L+IE ++ + + K I+ + + SN
Sbjct: 124 MEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI----NDKTKIV-AIAHISN 178
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G +D ++IA + HQ+G D A + P++++D++ D Y S HK L GP
Sbjct: 179 VLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML-GPT 234
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
G+L + L Q P GG +++V+ ++ D+ + GTP + Q I
Sbjct: 235 GIGVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIAQAIG 288
Query: 365 AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424
A A E IG + I K E+ A E++ + I+I G +R +++FN+
Sbjct: 289 LAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL----- 343
Query: 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
+ +H VAT + D G+ R G CA P
Sbjct: 344 -------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain MSSA476) (taxid: 282459) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q6GIH2|CSD_STAAR Probable cysteine desulfurase OS=Staphylococcus aureus (strain MRSA252) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 174/402 (43%), Gaps = 52/402 (12%)
Query: 69 FDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128
D +RL Y D TA+ ++ + N + + + N H +G T+ A
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARE 77
Query: 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP 188
+++ + + +IF GTTA+I + G A EE + V
Sbjct: 78 TVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDA-------------NVEEGDEIVVTE 123
Query: 189 HEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHH+N++ W+Q A + I + DG L+IE ++ + + K I+ + + SN
Sbjct: 124 MEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI----NDKTKIV-AIAHISN 178
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G +D ++IA + HQ+G D A + P++++D++ D Y S HK L GP
Sbjct: 179 VLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML-GPT 234
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
G+L + L Q P GG +++V+ ++ D+ + GTP + Q I
Sbjct: 235 GIGVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIAQAIG 288
Query: 365 AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424
A A E IG + I K E+ A E++ + I+I G +R +++FN+
Sbjct: 289 LAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL----- 343
Query: 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
+ +H VAT + D G+ R G CA P
Sbjct: 344 -------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain MRSA252) (taxid: 282458) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q5HHH0|CSD_STAAC Probable cysteine desulfurase OS=Staphylococcus aureus (strain COL) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 103/402 (25%), Positives = 174/402 (43%), Gaps = 52/402 (12%)
Query: 69 FDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128
D +RL Y D TA+ ++ + N + + + N H +G T+ A
Sbjct: 18 LDQKVNGKRLAYLDSTATSQTPVQVLNVLEDYYKRYNSNVHRGVHTLGSLATDGYENARE 77
Query: 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP 188
+++ + + +IF GTTA+I + G A EE + V
Sbjct: 78 TVRRFINAKYFEEIIFT-RGTTASINLVAHSYGDA-------------NVEEGDEIVVTE 123
Query: 189 HEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHH+N++ W+Q A + I + DG L+IE ++ + + K I+ + + SN
Sbjct: 124 MEHHANIVPWQQLAKRKNATLKFIPMTADGELNIEDIKQTI----NDKTKIV-AIAHISN 178
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G +D ++IA + HQ+G D A + P++++D++ D Y S HK L GP
Sbjct: 179 VLGTINDVKTIAEIAHQHGAIISVDGAQAAPHMKLDMQEMNADFYS---FSGHKML-GPT 234
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
G+L + L Q P GG +++V+ ++ D+ + GTP + Q I
Sbjct: 235 GIGVLFGKRELLQ--KMEPIEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIAQAIG 288
Query: 365 AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424
A A E IG + I K E+ A E++ + I+I G +R +++FN+
Sbjct: 289 LAEAIRYLERIGFDAIHKYEQELTIYAYEQMSAIEGIEIYGPPKDRRAGVITFNL----- 343
Query: 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
+ +H VAT + D G+ R G CA P
Sbjct: 344 -------------QDVHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus aureus (strain COL) (taxid: 93062) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q8CTA4|CSD_STAES Probable cysteine desulfurase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 173/395 (43%), Gaps = 52/395 (13%)
Query: 76 RRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG 135
+RL Y D TA+ ++ + N + + + N H +G T+ A +++ +
Sbjct: 25 KRLAYLDSTATSQTPVQVLNVLDDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFIN 84
Query: 136 GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195
+ +IF GTTA+I + G A S E + V EHH+N+
Sbjct: 85 AKYFEEIIFT-RGTTASINIVAHSYGDANISEGDE-------------IVVTEMEHHANI 130
Query: 196 LSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD 251
+ W+Q A + I + DG L ++ +++ + + K I+ + + SNV G +D
Sbjct: 131 VPWQQLAKRKNATLKFIPMTKDGELQLDDIKATI----NDKTKIV-AIAHVSNVLGTIND 185
Query: 252 TRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLM 311
++IA++ H++G D A S P++ +D++ D Y S HK L GP G+L
Sbjct: 186 VKTIAKIAHEHGAVISVDGAQSAPHMALDMQDIDADFYS---FSGHKML-GPTGIGVLYG 241
Query: 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWV 371
+ L Q + P GG +++V+ ++ D+ + GTP + Q I A A
Sbjct: 242 KRELLQ--NMEPVEFGGDMIDFVSKYDST----WADLPTKFEAGTPLIAQAIGLAEAIHY 295
Query: 372 KEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGEN 431
E +G I + E+ E A E++L ++I G +R +++FN+
Sbjct: 296 IENLGFNAIHQHEKELTEYAYEQMLTIDGLEIYGPPKDRRAGVITFNL------------ 343
Query: 432 TKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
+H VAT + D G+ R G CA P
Sbjct: 344 ------ADIHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus epidermidis (strain ATCC 12228) (taxid: 176280) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q5HQQ0|CSD_STAEQ Probable cysteine desulfurase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (272), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 99/395 (25%), Positives = 173/395 (43%), Gaps = 52/395 (13%)
Query: 76 RRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG 135
+RL Y D TA+ ++ + N + + + N H +G T+ A +++ +
Sbjct: 25 KRLAYLDSTATSQTPVQVLNVLDDYYKRYNSNVHRGVHTLGSLATDGYENARETVRRFIN 84
Query: 136 GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195
+ +IF GTTA+I + G A S E + V EHH+N+
Sbjct: 85 AKYFEEIIFT-RGTTASINIVAHSYGDANISEGDE-------------IVVTEMEHHANI 130
Query: 196 LSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD 251
+ W+Q A + I + DG L ++ +++ + + K I+ + + SNV G +D
Sbjct: 131 VPWQQLAKRKNATLKFIPMTKDGELQLDDIKATI----NDKTKIV-AIAHVSNVLGTIND 185
Query: 252 TRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLM 311
++IA++ H++G D A S P++ +D++ D Y S HK L GP G+L
Sbjct: 186 VKTIAKIAHEHGAVISVDGAQSAPHMALDMQDIDADFYS---FSGHKML-GPTGIGVLYG 241
Query: 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWV 371
+ L Q + P GG +++V+ ++ D+ + GTP + Q I A A
Sbjct: 242 KRELLQ--NMEPVEFGGDMIDFVSKYDAT----WADLPTKFEAGTPLIAQAIGLAEAIHY 295
Query: 372 KEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGEN 431
E +G I + E+ E A E++L ++I G +R +++FN+
Sbjct: 296 IENLGFNAIHQHEKELTEYAYEQMLTIDGLEIYGPPKDRRAGVITFNL------------ 343
Query: 432 TKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
+H VAT + D G+ R G CA P
Sbjct: 344 ------ADIHPHDVATAV-DTEGVAVRAGHHCAQP 371
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Staphylococcus epidermidis (strain ATCC 35984 / RP62A) (taxid: 176279) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q9K7A0|CSD_BACHD Probable cysteine desulfurase OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=csd PE=3 SV=2 | Back alignment and function description |
|---|
Score = 97.1 bits (240), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 104/402 (25%), Positives = 168/402 (41%), Gaps = 54/402 (13%)
Query: 69 FDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128
D L Y D A+ + + + + + N H +G T+ A
Sbjct: 13 LDQEVNGSPLVYLDSAATSQKPIAVIEALDDYYRRYNSNVHRGVHTLGTLATDGYEGARE 72
Query: 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP 188
I++ + + +IF GTT AI + G R L + DE + + P
Sbjct: 73 KIRRFIHASSTEEIIFT-RGTTTAINLVAASYG-------RANLGEG--DE----IVITP 118
Query: 189 HEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHHSN++ W+Q + A + + L DG + IE + + +++ + + SN
Sbjct: 119 MEHHSNIIPWQQVAKATGATLTYLPLQKDGTIKIEDVEKTI-----SEKTKIVAIMHVSN 173
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G + + IA + H++G D A S P+++IDV Q G D S HK + GP
Sbjct: 174 VLGTINPVKEIAEIAHRHGAIMLVDGAQSAPHMKIDV---QELGCDFFAFSGHK-MAGPT 229
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
G+L KA L P GG +++V ++ +++ + GGTP + I
Sbjct: 230 GIGVLYGKKA--HLEKMEPVEFGGEMIDFVGLYDST----WKELPWKFEGGTPIIAGAIG 283
Query: 365 AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424
A E IG + I+K E + AL+RL + + + G KR +++FNI
Sbjct: 284 LGAAIDFLEDIGLDEIEKHEHELAQYALDRLSELEGMTVYG--PQKRAGLVTFNI----- 336
Query: 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
+ +H VAT+L D GI R G CA P
Sbjct: 337 -------------EDVHPHDVATVL-DADGIAVRAGHHCAQP 364
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) (taxid: 272558) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
| >sp|Q9XAD5|CSD_STRCO Probable cysteine desulfurase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=csd PE=3 SV=1 | Back alignment and function description |
|---|
Score = 92.0 bits (227), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 103/453 (22%), Positives = 183/453 (40%), Gaps = 76/453 (16%)
Query: 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG 136
+L Y D+ A+ + R + + + + N H + + T + A + + + +
Sbjct: 29 KLVYLDNAATSQKPRQVLDALSEYYERYNANVHRGVHVLAEEATALYEGARDKVAEFINA 88
Query: 137 GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196
D +IF + + + + + ++G A R + + + EHHSN++
Sbjct: 89 PSRDEVIFTKNASES-LNLVANMLGWA---------DDPYRVDHETEIVITEMEHHSNIV 138
Query: 197 SWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT 252
W+ ++ A++ GL DDG LD+ + + ++ + SF SN+ G +
Sbjct: 139 PWQLLAQRTGAKLRWFGLTDDGRLDLSNIDEVI-----TEKTKVVSFVLVSNILGTQNPV 193
Query: 253 RSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312
+I R + G C D + + P++ +DV++ Q D + + HK + GP G+L
Sbjct: 194 EAIVRRAQEVGALVCIDASQAAPHMPLDVQALQA---DFVAFTGHK-MCGPTGIGVLWGR 249
Query: 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK 372
+ L L PP GG + V+ + + Y + E+ GTP V Q + A
Sbjct: 250 QEL--LEDLPPFLGGGEMIETVSMHS---STYAPAPHKFEA-GTPPVAQAVGLGAAIDYL 303
Query: 373 EYIGHEVIKKQEETYIERALERLLPNQNIKILG-NTSTKRQAILSF---NIHSSTINSSL 428
IG + I E E A++RLL +++I+G T+ +R A +SF +IH + L
Sbjct: 304 NSIGMDKILAHEHALTEYAVKRLLEVPDLRIIGPTTAEERGAAISFTLGDIHPHDVGQVL 363
Query: 429 GENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQK 488
E GI R G CA P +R I
Sbjct: 364 DEQ----------------------GIAVRVGHHCARPVC-------------LRYGI-- 386
Query: 489 GYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521
P TR SF Y + E + ++ LE +
Sbjct: 387 ------PATTRASFYLYSTPAEIDALVDGLEHV 413
|
Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) (taxid: 100226) EC: 2 EC: . EC: 8 EC: . EC: 1 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | ||||||
| 255552410 | 633 | cysteine desulfurylase, putative [Ricinu | 0.977 | 0.939 | 0.705 | 0.0 | |
| 359477024 | 636 | PREDICTED: probable cysteine desulfurase | 0.942 | 0.902 | 0.694 | 0.0 | |
| 225431495 | 658 | PREDICTED: uncharacterized protein LOC10 | 0.945 | 0.875 | 0.660 | 0.0 | |
| 449461845 | 644 | PREDICTED: probable cysteine desulfurase | 0.947 | 0.895 | 0.672 | 0.0 | |
| 449530392 | 644 | PREDICTED: uncharacterized protein LOC10 | 0.947 | 0.895 | 0.670 | 0.0 | |
| 296088558 | 670 | unnamed protein product [Vitis vinifera] | 0.899 | 0.817 | 0.681 | 0.0 | |
| 357519937 | 635 | hypothetical protein MTR_8g093550 [Medic | 0.975 | 0.935 | 0.646 | 0.0 | |
| 224095928 | 488 | predicted protein [Populus trichocarpa] | 0.801 | 1.0 | 0.780 | 0.0 | |
| 356511174 | 609 | PREDICTED: probable cysteine desulfurase | 0.924 | 0.924 | 0.670 | 0.0 | |
| 356511172 | 637 | PREDICTED: probable cysteine desulfurase | 0.983 | 0.940 | 0.660 | 0.0 |
| >gi|255552410|ref|XP_002517249.1| cysteine desulfurylase, putative [Ricinus communis] gi|223543620|gb|EEF45149.1| cysteine desulfurylase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 868 bits (2244), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 431/611 (70%), Positives = 507/611 (82%), Gaps = 16/611 (2%)
Query: 10 SKSTSSCKKTCSSEFENEQPHHHSESFGAQDMGSVPKSISSSEKKLTWLQSQIIGKNAEF 69
S+ST+S + T SS ++ + SESF D+G VPKSISS E++L WL+SQIIG + EF
Sbjct: 28 SRSTNSTR-TVSSALSSDLCNR-SESFRTLDIG-VPKSISS-ERRLAWLRSQIIGDDVEF 83
Query: 70 DSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNY 129
+SPFGKRRLTYADHTASGRSL YIEN+IINNVLPFYGNTHTCDSYVG TT MVHEA+ Y
Sbjct: 84 ESPFGKRRLTYADHTASGRSLHYIENFIINNVLPFYGNTHTCDSYVGHRTTKMVHEATQY 143
Query: 130 IKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPH 189
IK+ LGGG+EDA+IFCGSGTTAAIKRLQEVMGIAVPSI+R+++IKCL +EERWVVFVGP+
Sbjct: 144 IKRSLGGGEEDAIIFCGSGTTAAIKRLQEVMGIAVPSIMRDRIIKCLSNEERWVVFVGPY 203
Query: 190 EHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY 249
EHHSNLLSWRQSLAEVVEIGL+D GL+DIEAL L+ Y+ A RPILGSFSA SNVTGI+
Sbjct: 204 EHHSNLLSWRQSLAEVVEIGLNDSGLIDIEALEKLLDSYRKANRPILGSFSASSNVTGIF 263
Query: 250 SDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGIL 309
S TR +A+LLH+YGGF CFDFAASGPYVEID+R G+ DGYDAIFLS HKFLGGPGSPGIL
Sbjct: 264 SKTRGLAQLLHRYGGFVCFDFAASGPYVEIDMRYGEVDGYDAIFLSPHKFLGGPGSPGIL 323
Query: 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAF 369
LM+KALYQL PPSTCGGGTV YVNGFN+KDTLYL+DIEERE+GGTPQ+IQ IRAALAF
Sbjct: 324 LMSKALYQLKYSPPSTCGGGTVCYVNGFNDKDTLYLDDIEERENGGTPQIIQTIRAALAF 383
Query: 370 WVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG 429
WVKEYIG+ VI++QE+ YI +ALER+ N+NI ILGNTS +RQAILSF I+S+T +SS
Sbjct: 384 WVKEYIGYNVIEEQEKNYISKALERVKSNKNIWILGNTSAERQAILSFLIYSTTNSSSSS 443
Query: 430 ENTK--------TETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQ 481
+ + DKPLHG FVA+LLNDLFGIQ+RGGCACAGPYGH LLD+ EA S
Sbjct: 444 SKDESSSSSKTGNKRDKPLHGAFVASLLNDLFGIQSRGGCACAGPYGHVLLDISEANSLA 503
Query: 482 IRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTW 541
+RSAI +GY+G KPGWTRISFPYYMSN+EFEF + A+EF+AIYGQRFLPLY FN KTGTW
Sbjct: 504 LRSAIHQGYMGAKPGWTRISFPYYMSNQEFEFIMAAVEFVAIYGQRFLPLYGFNFKTGTW 563
Query: 542 CF-MTAFEELIIGKQNSHKLHAKQATVPAE--DEYAIYLENARHIASLLPEFPPQHRLPE 598
F AF++L++GK+N A V E ++YA YLE A+HIA+LLP+FP +LPE
Sbjct: 564 YFKKKAFKDLLVGKENKCNTFP-MAAVGGEIINKYASYLEIAKHIANLLPKFPSSRKLPE 622
Query: 599 DVDPSCLHFRI 609
D+D + L+FR+
Sbjct: 623 DLDYNLLYFRV 633
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477024|ref|XP_002274757.2| PREDICTED: probable cysteine desulfurase-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 841 bits (2173), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/593 (69%), Positives = 480/593 (80%), Gaps = 19/593 (3%)
Query: 33 SESFGAQDMGSVPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRY 92
SESF ++G VP + +SS+KKL+WL+SQI+G +AEF SPFG RRLTYADHTASGR LRY
Sbjct: 47 SESFRRLEVG-VPNT-NSSQKKLSWLRSQIVGGDAEFSSPFGVRRLTYADHTASGRCLRY 104
Query: 93 IENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152
IENYI +NVLPFYGNTHTCDS+VG TT MVHEA+ YI+KCLGG Q+DA++FCGSGTTAA
Sbjct: 105 IENYINDNVLPFYGNTHTCDSFVGSRTTKMVHEATRYIRKCLGGRQDDALMFCGSGTTAA 164
Query: 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD 212
IKRLQEVMGI VPS+LRE+++K R EERWVVFVGP+EHHSNLLSWRQSLAEVVEIGLDD
Sbjct: 165 IKRLQEVMGITVPSVLRERVLKTFRSEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGLDD 224
Query: 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA 272
DGLLD+EALR +LE Y+ + RP+LGSFSACSNVTGI++DTR++A+LLH+YGGF CFDFAA
Sbjct: 225 DGLLDMEALRLQLESYRRSNRPLLGSFSACSNVTGIFTDTRALAQLLHRYGGFVCFDFAA 284
Query: 273 SGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVN 332
SGPYVEID+RSG D YDAIFLS HKFLGGPGSPGILLM+KALYQLG PSTCGGG V+
Sbjct: 285 SGPYVEIDMRSGDIDCYDAIFLSPHKFLGGPGSPGILLMSKALYQLGCSAPSTCGGGIVD 344
Query: 333 YVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERAL 392
+VNGFNEKDTLYLEDIE RE GTP +IQ RAALAFWVKEY+G+ VI+++E Y E AL
Sbjct: 345 FVNGFNEKDTLYLEDIEGREDVGTPPIIQKTRAALAFWVKEYVGYNVIEEEENNYTEAAL 404
Query: 393 ERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTET--------------DK 438
ERLLPN NI +LGNT+ KRQAILSF ++S+T NS+ + ++ ET DK
Sbjct: 405 ERLLPNPNIWVLGNTTAKRQAILSFLVYSTT-NSASDDMSREETKGRFYMWRETGNRKDK 463
Query: 439 PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWT 498
PLHGPFVA LLNDLFGIQARGGCACAGPYGH LL +DE QS RSAIQKGY G+KPGWT
Sbjct: 464 PLHGPFVAKLLNDLFGIQARGGCACAGPYGHSLLKVDETQSLAFRSAIQKGYSGIKPGWT 523
Query: 499 RISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTWCFM-TAFEELIIGKQNS 557
RISFPYYMS+EEFEF L+ALEFIA YGQRFLPLY+FN KTG+W F A ++ +
Sbjct: 524 RISFPYYMSSEEFEFILDALEFIATYGQRFLPLYHFNWKTGSWSFRKKALKDTSTPTLSL 583
Query: 558 HK-LHAKQATVPAEDEYAIYLENARHIASLLPEFPPQHRLPEDVDPSCLHFRI 609
K + A + YA YL A IASLL +FPP R+PED+D + + FR+
Sbjct: 584 FKAMPAFSSINEIISRYASYLATANKIASLLEKFPPHRRIPEDIDVNLITFRV 636
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225431495|ref|XP_002274844.1| PREDICTED: uncharacterized protein LOC100265977 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 836 bits (2160), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 407/616 (66%), Positives = 477/616 (77%), Gaps = 40/616 (6%)
Query: 31 HHSESFGAQDMGSVPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSL 90
H SESF DM SVPK++S+ EKKL WL+SQI+ + EF SP+G RR+TYADHTASGR L
Sbjct: 44 HASESFTMIDM-SVPKTVSA-EKKLAWLRSQIVVGDGEFKSPYGLRRVTYADHTASGRCL 101
Query: 91 RYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTT 150
YIENYI+NNVLPFYGNTHTCDS+VG TT MVHEA+ Y+KKCLGG Q+DA++FCGSGTT
Sbjct: 102 HYIENYIVNNVLPFYGNTHTCDSFVGDRTTKMVHEATKYVKKCLGGKQDDALVFCGSGTT 161
Query: 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL 210
AAIKRLQEVMGI PSI+RE+++K LR EERWVVFVGP+EHHSNLLSWRQSLAEVVEIGL
Sbjct: 162 AAIKRLQEVMGITSPSIMRERVLKTLRSEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGL 221
Query: 211 DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270
D++GL+D++AL+ +LE YK RP+LGSFSACSNVTGIY++TR++A++LHQ+G F CFDF
Sbjct: 222 DENGLIDMKALKQQLESYKYTNRPLLGSFSACSNVTGIYTNTRALAKILHQHGAFVCFDF 281
Query: 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGT 330
AASGPYVEID+RSG+ DGYDAIFLS HKFLGGPG+PGILLM+K LY L S PPSTCGGGT
Sbjct: 282 AASGPYVEIDMRSGEIDGYDAIFLSPHKFLGGPGTPGILLMSKVLYNLASSPPSTCGGGT 341
Query: 331 VNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390
V +VNGFNEKDTLY+++IEERE GTP ++Q I+ AL FWVKEYIG+ VI++ E YIE
Sbjct: 342 VAFVNGFNEKDTLYVDEIEEREDAGTPPIVQKIKTALTFWVKEYIGYNVIEQMEHMYIEA 401
Query: 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG---------------ENTKTE 435
ALERLLPN NIK+LGNTS KRQAILSF ++S+T +SS G T +
Sbjct: 402 ALERLLPNPNIKVLGNTSAKRQAILSFLVYSTTNSSSDGMKDSRGDIEGRFYMWRETGNK 461
Query: 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKP 495
KPLHGPFVA LLNDLFGIQARGGCACAGPYGH LL++DE +S RSAI G GVKP
Sbjct: 462 RGKPLHGPFVAKLLNDLFGIQARGGCACAGPYGHSLLNVDETRSLAFRSAIHNGNNGVKP 521
Query: 496 GWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTWCF-MTAFEELIIGK 554
GWTRISFPYYMS EEFEF L ALEFIA YGQRFLPLYNFN KTG W F A ++ + GK
Sbjct: 522 GWTRISFPYYMSIEEFEFILAALEFIATYGQRFLPLYNFNWKTGNWTFKKKALKDALAGK 581
Query: 555 QN------------------SHKLHAKQATVPAEDE----YAIYLENARHIASLLPEFPP 592
+N S++ A+ DE Y YLE A+ IASLL +FPP
Sbjct: 582 ENNGNFGGLSLARGMQASIMSNQSEAQHNNADENDEIINKYTSYLETAKRIASLLEKFPP 641
Query: 593 QHRLPEDVDPSCLHFR 608
R+PED+D + FR
Sbjct: 642 HRRVPEDIDLNLCTFR 657
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461845|ref|XP_004148652.1| PREDICTED: probable cysteine desulfurase-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 835 bits (2156), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/610 (67%), Positives = 484/610 (79%), Gaps = 33/610 (5%)
Query: 32 HSESFGAQDMGSVPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLR 91
S SF +M +P S E+++ WL+SQIIG AE DSPFG+RRL YADHTASGRSLR
Sbjct: 36 RSRSFRTVEMDGIPFS-DRVEERMGWLRSQIIGGEAEIDSPFGERRLCYADHTASGRSLR 94
Query: 92 YIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151
YIE++I+ VLPFYGNTHTCDSYVG HTT MVH+A+ YIK+CLGGG+E+A++FCG GTT+
Sbjct: 95 YIEDFILRKVLPFYGNTHTCDSYVGHHTTKMVHDATTYIKRCLGGGEEEAILFCGQGTTS 154
Query: 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD 211
AIKRLQEVMGIAVPSILRE++I+ L++EERWVVFVGP+EHHSNLLSWRQSLAEVVEIG+D
Sbjct: 155 AIKRLQEVMGIAVPSILRERVIETLKEEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGMD 214
Query: 212 DDGLLDIEALRSKLELYKDA-KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270
++GLLD E LRS+LE K A RPILGSFSACSNVTGIYSDT++IA L+HQYGG CFDF
Sbjct: 215 ENGLLDFEMLRSQLEACKKAGNRPILGSFSACSNVTGIYSDTKAIATLIHQYGGHVCFDF 274
Query: 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGT 330
AASGPYV+ID++SG+ DGYDAIFLSTHKFLGGPGSPGILLM K+LY+L S PPSTCGGGT
Sbjct: 275 AASGPYVQIDMKSGEIDGYDAIFLSTHKFLGGPGSPGILLMNKSLYKLKSSPPSTCGGGT 334
Query: 331 VNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390
V YVNGF EKDTLY E+IEERE+GGTPQ+I +IRAALAFWVKEYIG++ I+KQE YIER
Sbjct: 335 VTYVNGFTEKDTLYYENIEERENGGTPQIIGIIRAALAFWVKEYIGYQEIEKQEHRYIER 394
Query: 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINS---------------------SLG 429
AL+RLLPN++I ILG+TSTKRQAILSF I+SST NS +
Sbjct: 395 ALKRLLPNRSISILGSTSTKRQAILSFIIYSSTNNSLPNCITDMLGNPNSREKVKKLYMW 454
Query: 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKG 489
E T + KPLHGPFVA LL+DLFG+QARGGC+CAGPYGH LL++DEA S R+AI KG
Sbjct: 455 EETGSMRAKPLHGPFVAALLSDLFGVQARGGCSCAGPYGHKLLNIDEACSQAYRTAIAKG 514
Query: 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTWCFMTAFEE 549
Y G+KPGWTR+SFPYYMSNEEFEF L+ALEFIA YGQRFLPLY FN++ G+W
Sbjct: 515 YEGIKPGWTRVSFPYYMSNEEFEFILKALEFIADYGQRFLPLYAFNLRNGSWTLKEKELT 574
Query: 550 LIIGKQN---SHKLHAKQATVPAEDEYAI-------YLENARHIASLLPEFPPQHRLPED 599
++GK+N SH K AE + A YLE+A+ IA+LLP+FPP+ L ED
Sbjct: 575 DLLGKENYSASHIFAFKNQCTNAEAKLAAIVYKHKSYLESAKRIANLLPKFPPERVLHED 634
Query: 600 VDPSCLHFRI 609
++ S L FRI
Sbjct: 635 IESSLLTFRI 644
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449530392|ref|XP_004172179.1| PREDICTED: uncharacterized protein LOC101232076 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 831 bits (2147), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/610 (67%), Positives = 484/610 (79%), Gaps = 33/610 (5%)
Query: 32 HSESFGAQDMGSVPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLR 91
S SF +M +P S E+++ WL+SQIIG AE DSPFG+RRL YADHTASGRSLR
Sbjct: 36 RSRSFRTVEMDGIPFS-DRVEERMGWLRSQIIGGEAEIDSPFGERRLCYADHTASGRSLR 94
Query: 92 YIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151
YIE++I+ VLPFYGNTHTCDSYVG HTT MV++A+ YIK+CLGGG+E+A++FCG GTT+
Sbjct: 95 YIEDFILRKVLPFYGNTHTCDSYVGHHTTKMVNDATTYIKRCLGGGEEEAILFCGQGTTS 154
Query: 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD 211
AIKRLQEVMGIAVPSILRE++I+ L++EERWVVFVGP+EHHSNLLSWRQSLAEVVEIG+D
Sbjct: 155 AIKRLQEVMGIAVPSILRERVIETLKEEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGMD 214
Query: 212 DDGLLDIEALRSKLELYKDA-KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270
++GLLD E LRS+LE K A RPILGSFSACSNVTGIYSDT++IA L+HQYGG CFDF
Sbjct: 215 ENGLLDFEMLRSQLEACKKAGNRPILGSFSACSNVTGIYSDTKAIATLIHQYGGHVCFDF 274
Query: 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGT 330
AASGPYV+ID++SG+ DGYDAIFLSTHKFLGGPGSPGILLM K+LY+L S PPSTCGGGT
Sbjct: 275 AASGPYVQIDMKSGEIDGYDAIFLSTHKFLGGPGSPGILLMNKSLYKLKSSPPSTCGGGT 334
Query: 331 VNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390
V YVNGF EKDTLY E+IEERE+GGTPQ+I +IRAALAFWVKEYIG++ I+KQE YIER
Sbjct: 335 VTYVNGFTEKDTLYYENIEERENGGTPQIIGIIRAALAFWVKEYIGYQEIEKQEHRYIER 394
Query: 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINS---------------------SLG 429
AL+RLLPN++I ILG+TSTKRQAILSF I+SST NS +
Sbjct: 395 ALKRLLPNRSISILGSTSTKRQAILSFIIYSSTNNSLPNCITDMLGNPNSREKVKKLYMW 454
Query: 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKG 489
E T + KPLHGPFVA LL+DLFG+QARGGC+CAGPYGH LL++DEA S R+AI KG
Sbjct: 455 EETGSMRAKPLHGPFVAALLSDLFGVQARGGCSCAGPYGHKLLNIDEACSQAYRTAIAKG 514
Query: 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTWCFMTAFEE 549
Y G+KPGWTR+SFPYYMSNEEFEF L+ALEFIA YGQRFLPLY FN++ G+W
Sbjct: 515 YEGIKPGWTRVSFPYYMSNEEFEFILKALEFIADYGQRFLPLYAFNLRNGSWTLKEKELT 574
Query: 550 LIIGKQN---SHKLHAKQATVPAEDEYAI-------YLENARHIASLLPEFPPQHRLPED 599
++GK+N SH K AE + A YLE+A+ IA+LLP+FPP+ L ED
Sbjct: 575 DLLGKENYSASHIFAFKNQWTNAEAKLAAIVYKHKSYLESAKRIANLLPKFPPERVLHED 634
Query: 600 VDPSCLHFRI 609
++ S L FRI
Sbjct: 635 IESSLLTFRI 644
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296088558|emb|CBI37549.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 828 bits (2139), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/599 (68%), Positives = 468/599 (78%), Gaps = 51/599 (8%)
Query: 33 SESFGAQDMGSVPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRY 92
SESF ++G VP + +SS+KKL+WL+SQI+G +AEF SPFG RRLTYADHTASGR LRY
Sbjct: 101 SESFRRLEVG-VPNT-NSSQKKLSWLRSQIVGGDAEFSSPFGVRRLTYADHTASGRCLRY 158
Query: 93 IENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152
IENYI +NVLPFYGNTHTCDS+VG TT MVHEA+ YI+KCLGG Q+DA++FCGSGTTAA
Sbjct: 159 IENYINDNVLPFYGNTHTCDSFVGSRTTKMVHEATRYIRKCLGGRQDDALMFCGSGTTAA 218
Query: 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD 212
IKRLQEVMGI VPS+LRE+++K R EERWVVFVGP+EHHSNLLSWRQSLAEVVEIGLDD
Sbjct: 219 IKRLQEVMGITVPSVLRERVLKTFRSEERWVVFVGPYEHHSNLLSWRQSLAEVVEIGLDD 278
Query: 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA 272
DGLLD+EALR +LE Y+ + RP+LGSFSACSNVTGI++DTR++A+LLH+YGGF CFDFAA
Sbjct: 279 DGLLDMEALRLQLESYRRSNRPLLGSFSACSNVTGIFTDTRALAQLLHRYGGFVCFDFAA 338
Query: 273 SGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVN 332
SGPYVEID+RSG D YDAIFLS HKFLGGPGSPGILLM+KALYQLG PSTCGGG V+
Sbjct: 339 SGPYVEIDMRSGDIDCYDAIFLSPHKFLGGPGSPGILLMSKALYQLGCSAPSTCGGGIVD 398
Query: 333 YVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERAL 392
+VNGFNEKDTLYLEDIE RE GTP +IQ RAALAFWVKEY+G+ VI+++E Y E AL
Sbjct: 399 FVNGFNEKDTLYLEDIEGREDVGTPPIIQKTRAALAFWVKEYVGYNVIEEEENNYTEAAL 458
Query: 393 ERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDL 452
ERLLPN NI +LGNT+ KRQAILSF PLHGPFVA LLNDL
Sbjct: 459 ERLLPNPNIWVLGNTTAKRQAILSF--------------------LPLHGPFVAKLLNDL 498
Query: 453 FGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512
FGIQARGGCACAGPYGH LL +DE QS RSAIQKGY G+KPGWTRISFPYYMS+EEFE
Sbjct: 499 FGIQARGGCACAGPYGHSLLKVDETQSLAFRSAIQKGYSGIKPGWTRISFPYYMSSEEFE 558
Query: 513 FTLEALEFIAIYGQRFLPLYNFNIKTGTWCF------------------MTAFEELIIGK 554
F L+ALEFIA YGQRFLPLY+FN KTG+W F M AF +
Sbjct: 559 FILDALEFIATYGQRFLPLYHFNWKTGSWSFRKKALKDTSTPTLSLFKAMPAFSSI---- 614
Query: 555 QNSHKLHAKQATVPAEDE----YAIYLENARHIASLLPEFPPQHRLPEDVDPSCLHFRI 609
+ +LH +DE YA YL A IASLL +FPP R+PED+D + + FR+
Sbjct: 615 SDGSRLHTHAGN---KDEIISRYASYLATANKIASLLEKFPPHRRIPEDIDVNLITFRV 670
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357519937|ref|XP_003630257.1| hypothetical protein MTR_8g093550 [Medicago truncatula] gi|355524279|gb|AET04733.1| hypothetical protein MTR_8g093550 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/620 (64%), Positives = 487/620 (78%), Gaps = 26/620 (4%)
Query: 8 ARSKSTSSCKKTCSSEFENEQPHHHSESFGAQDMGSVPKSI---SSSEKKLTWLQSQIIG 64
+R+K + +T +F N HS+SF +D+ + S+ S E+KL WL+SQIIG
Sbjct: 24 SRNKVNNVSTETSPPDFCN----IHSDSF--EDLVEIGISLPCNESVEEKLCWLRSQIIG 77
Query: 65 KNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVH 124
+ EF+SPFG R+L Y+DHTASGRSL +IEN+I ++LPFYGNTHTC+SYVG TT MVH
Sbjct: 78 NDVEFNSPFGTRKLVYSDHTASGRSLHFIENFITKHLLPFYGNTHTCESYVGNRTTKMVH 137
Query: 125 EASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVV 184
EA+ YIKKCLGGG++DA++ CGSG TAAIKRLQEVMGI VPSILRE++++CL +EERWVV
Sbjct: 138 EATKYIKKCLGGGEDDALMLCGSGATAAIKRLQEVMGIVVPSILRERMLRCLSEEERWVV 197
Query: 185 FVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
FVGP+EHHSN+LSWRQSLAEVVEIGLDD GLLD+EAL+ +LE YKD RP+LGSFSACSN
Sbjct: 198 FVGPYEHHSNILSWRQSLAEVVEIGLDDQGLLDMEALKLQLEAYKDTNRPLLGSFSACSN 257
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
VTGIYSDTR+IARL+HQY GFACFDFAASGPYVEID+RSG+ DGYDA+F+S HKFLGGP
Sbjct: 258 VTGIYSDTRAIARLIHQYKGFACFDFAASGPYVEIDMRSGKIDGYDAVFISPHKFLGGPD 317
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
SPGILLM K LY L PPSTCGGGTVNYVNGFNEKDTLYLEDIEERE+GGTP +IQ +R
Sbjct: 318 SPGILLMNKTLYMLRFSPPSTCGGGTVNYVNGFNEKDTLYLEDIEERENGGTPPIIQTVR 377
Query: 365 AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424
AALAFWVKEYI +E I ++E+ YI +AL++ +PN NI+ILGN STKRQAILSF I+ STI
Sbjct: 378 AALAFWVKEYINYEEIDRREQLYINKALKKFIPNPNIEILGNISTKRQAILSFVIY-STI 436
Query: 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRS 484
N S TK + K ++G FVATLLNDLFGIQ+RGGCACAGPYGH LL+++E+QS +RS
Sbjct: 437 NRS-ERKTKNKRGKIINGSFVATLLNDLFGIQSRGGCACAGPYGHDLLNINESQSLAVRS 495
Query: 485 AIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTWCFM 544
AIQ+GYVGVKPGWTR+SFPYYM EEFEF L ++EF++IYGQRFLPLYNFN+K G W
Sbjct: 496 AIQEGYVGVKPGWTRVSFPYYMDEEEFEFILTSIEFVSIYGQRFLPLYNFNLKNGNWRIK 555
Query: 545 TAFEELIIGKQNSHKLHAKQAT----VPAEDEYAIYLEN-----------ARHIASLLPE 589
E ++ + N + K+ T A+ EY + +++ A+ IAS LP+
Sbjct: 556 KQKLETLMKENNCYFKETKEKTNNDFSKADGEYNVRIKSVGKLRRKSFVAAKCIASRLPK 615
Query: 590 FPPQHRLPEDVDPSCLHFRI 609
FP Q DVDP+ LHF +
Sbjct: 616 FPSQSIAYPDVDPNVLHFIV 635
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224095928|ref|XP_002310507.1| predicted protein [Populus trichocarpa] gi|222853410|gb|EEE90957.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 817 bits (2110), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/491 (78%), Positives = 435/491 (88%), Gaps = 3/491 (0%)
Query: 53 KKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCD 112
KKL WL+SQI+G + EFDSPFGKRRLTYADHTASGRSLRYIEN+IINNVLPFYGNTHT D
Sbjct: 1 KKLAWLRSQIVGNDIEFDSPFGKRRLTYADHTASGRSLRYIENFIINNVLPFYGNTHTSD 60
Query: 113 SYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKL 172
S+VG TT M+HEA+ YIKKCLGGGQ DA++FCGSGTTAAIKRLQEV+GIAVPS RE+L
Sbjct: 61 SHVGHRTTKMLHEAAEYIKKCLGGGQNDAIMFCGSGTTAAIKRLQEVIGIAVPSTFRERL 120
Query: 173 IKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232
IKCL +EERWVVFVGP+EHHSNLLSWRQSLAEV+EIGLDD+GL+DIE LR +LE Y+ A
Sbjct: 121 IKCLSNEERWVVFVGPYEHHSNLLSWRQSLAEVIEIGLDDNGLIDIEDLRRRLETYRHAN 180
Query: 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAI 292
RPILGSFSA SNVTGIYSDTR I++LLHQYGGFACFDFAASGPYV+I++RSG+ DGYD I
Sbjct: 181 RPILGSFSASSNVTGIYSDTRGISQLLHQYGGFACFDFAASGPYVKINMRSGEVDGYDGI 240
Query: 293 FLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352
FLS HKFLGGPGSPGILLM+KALYQLGS PSTCGGGTVNYVNGF+EKDTLYL DIEERE
Sbjct: 241 FLSPHKFLGGPGSPGILLMSKALYQLGSSAPSTCGGGTVNYVNGFSEKDTLYLNDIEERE 300
Query: 353 SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQ 412
SGGTPQ+IQ IRA+LAFW+KEYI ++VI+KQE+ YIE+AL RLLPN+NI +LGNT+ KRQ
Sbjct: 301 SGGTPQIIQTIRASLAFWIKEYISYQVIRKQEDIYIEKALNRLLPNKNIWVLGNTTAKRQ 360
Query: 413 AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLL 472
AI+SF I+S+T +SS G KPLHGPF+A LLND+FGIQARGGCACAGPYGH+LL
Sbjct: 361 AIVSFLIYSTTNSSSTG---MIHEGKPLHGPFIAALLNDVFGIQARGGCACAGPYGHNLL 417
Query: 473 DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLY 532
++E + IRSAI+KGY GVKPGWTR+SFPYYM NEEFEF L A+EF+AIYG RFLPLY
Sbjct: 418 HVNEPSTLAIRSAIEKGYAGVKPGWTRLSFPYYMFNEEFEFILTAIEFLAIYGHRFLPLY 477
Query: 533 NFNIKTGTWCF 543
+FN KTG W F
Sbjct: 478 HFNWKTGCWTF 488
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511174|ref|XP_003524304.1| PREDICTED: probable cysteine desulfurase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2106), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 400/597 (67%), Positives = 470/597 (78%), Gaps = 34/597 (5%)
Query: 31 HHSESFGAQDMGSVPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSL 90
+HSESF +P + S E+KL WL+SQIIG +AEFDSPFGKR++ YADHTASGRSL
Sbjct: 29 NHSESFKKLVEMGLPCN-ESVEEKLHWLRSQIIGNDAEFDSPFGKRKVVYADHTASGRSL 87
Query: 91 RYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTT 150
Y EN+II ++LPFYGNTHTCDSYVG TT MVHEA YIKKCLGGG++DA+I CGSGTT
Sbjct: 88 HYNENFIIKHLLPFYGNTHTCDSYVGSRTTKMVHEAREYIKKCLGGGEDDALILCGSGTT 147
Query: 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL 210
AAIKRLQEVMGIAVPS+LRE+++K L EERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL
Sbjct: 148 AAIKRLQEVMGIAVPSVLRERVLKSLGTEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL 207
Query: 211 DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270
D GLLDI+AL+ +LE Y+D RP+LGSFSACSNVTGIYSDTR+IA+LLH+Y FACFDF
Sbjct: 208 DQKGLLDIDALKLQLEAYRDTNRPMLGSFSACSNVTGIYSDTRAIAQLLHKYKAFACFDF 267
Query: 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGT 330
AASGPYVEIDVRSG++DGYDA+FLS HKFLGGP SPG+LLM KALY LGS PPSTCGGGT
Sbjct: 268 AASGPYVEIDVRSGESDGYDAVFLSPHKFLGGPDSPGVLLMNKALYLLGSSPPSTCGGGT 327
Query: 331 VNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390
V YVNGFNE+DTLYLE+IEERE+GGTP +IQ + AALAFWVKEYI +E I+K+E+ YI +
Sbjct: 328 VTYVNGFNEQDTLYLENIEERETGGTPPIIQTVTAALAFWVKEYISYEEIEKREQLYINK 387
Query: 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSS-----------------LGENTK 433
A ER N NI++LGN KRQAILSF I+S+T NSS L T
Sbjct: 388 AFERFGSNPNIEVLGNLKAKRQAILSFLIYSTTTNSSSAGEWSDGNKENEGELDLWAETG 447
Query: 434 TETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493
+ KPLHGPFVA LLNDLFGIQARGGCACAGPYGH LL ++++QS IRSA+Q+GY+GV
Sbjct: 448 NQRGKPLHGPFVAALLNDLFGIQARGGCACAGPYGHELLHINKSQSLAIRSAVQEGYIGV 507
Query: 494 KPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTWCFMT-AFEELII 552
KPGWTR+SFPYYMS E+FE+ L A+EF+A+YGQRF+PLY+FN+ G+W T FE L
Sbjct: 508 KPGWTRVSFPYYMSEEDFEYILRAIEFLAVYGQRFIPLYSFNLINGSWRLKTEKFEALT- 566
Query: 553 GKQNSHKLHAKQATVPAEDEYAIYLENARHIASLLPEFPPQHRLPEDVDPSCLHFRI 609
K++ + DE Y E A+ +AS LP+FP Q L EDVDP+ FR+
Sbjct: 567 -KEDMRR-----------DES--YFEVAKCVASGLPKFPSQGILQEDVDPNIFCFRV 609
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511172|ref|XP_003524303.1| PREDICTED: probable cysteine desulfurase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 814 bits (2103), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 411/622 (66%), Positives = 489/622 (78%), Gaps = 23/622 (3%)
Query: 6 FKARSK-STSSCKKTCSSEFENEQPHH----HSESFGAQDMGSVPKSISSSEKKLTWLQS 60
K RSK + + K +++ E E+ H HSESF VP + E+KL WL+S
Sbjct: 21 IKPRSKYAVADEGKNKTNDIEEERSHDDFCIHSESFKKLVEMGVPCN-ECVEEKLRWLRS 79
Query: 61 QIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTT 120
QIIG + +F SP G+R L YADHTAS RSL Y EN+I N++LPFYGNTHTCDSYVG TT
Sbjct: 80 QIIGNHLDFYSPLGRRILVYADHTASARSLNYNENFISNHLLPFYGNTHTCDSYVGSRTT 139
Query: 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE 180
MVHEA YIKKCLGGG++DA+I CGSGTTAAIKRLQEVMGIAVPS+LRE+++K L EE
Sbjct: 140 KMVHEAREYIKKCLGGGEDDALILCGSGTTAAIKRLQEVMGIAVPSVLRERVLKSLGTEE 199
Query: 181 RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFS 240
RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD GLLDI+AL+ +LE Y+D RP+LGSFS
Sbjct: 200 RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDQKGLLDIDALKLQLEAYRDTNRPMLGSFS 259
Query: 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFL 300
ACSNVTGIYSDTR+IA+LLH+Y FACFDFAASGPYVEI +RSGQ+DGYDAIFLS HKFL
Sbjct: 260 ACSNVTGIYSDTRAIAQLLHKYKAFACFDFAASGPYVEIKMRSGQSDGYDAIFLSPHKFL 319
Query: 301 GGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI 360
GGP SPG+LLM ALY+L S PPSTCGGGTVNYVNGFNEKDTLYLE+IEERE+GGTP +I
Sbjct: 320 GGPDSPGVLLMNNALYKLRSSPPSTCGGGTVNYVNGFNEKDTLYLENIEERETGGTPPII 379
Query: 361 QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIH 420
Q +RAALAFWVKEYIG++ I+K+E YI +AL+RL N NI+ILGN STKRQAILSF I+
Sbjct: 380 QTVRAALAFWVKEYIGYKEIEKREHMYINKALKRLKSNPNIEILGNLSTKRQAILSFVIY 439
Query: 421 SSTINSSLGEN-----------TKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469
+T NSS+ + T ++ K LHGPFVATLL+DLFGIQARGGCACAGPYGH
Sbjct: 440 PTTNNSSIKKQDNQRELNLWAETGSKRGKLLHGPFVATLLSDLFGIQARGGCACAGPYGH 499
Query: 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFL 529
LL+++E+QS IRSAI GYVGVKPGWTR+SFPYYM EEFEF L A+EF AIYGQRFL
Sbjct: 500 QLLNINESQSLAIRSAIHTGYVGVKPGWTRVSFPYYMEEEEFEFILTAIEFAAIYGQRFL 559
Query: 530 PLYNFNIKTGTWCFMTAFEELIIGKQ--NSHKLHAKQATVPAEDEYAIYLENARHIASLL 587
PLY+FN++ G+W T E +I ++ N + + KQ ++ + YL+ A++IASLL
Sbjct: 560 PLYSFNLRNGSWRMKTEKLETLIKEKNCNEYNIGVKQVSMLRKS----YLDIAKYIASLL 615
Query: 588 PEFPPQHRLPEDVDPSCLHFRI 609
P+FP + L EDV+PS L+FR+
Sbjct: 616 PKFPSEDILHEDVNPSILYFRV 637
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | ||||||
| UNIPROTKB|Q5LNM5 | 471 | SPO3178 "Uncharacterized prote | 0.413 | 0.535 | 0.388 | 1.2e-75 | |
| TIGR_CMR|SPO_3178 | 471 | SPO_3178 "conserved hypothetic | 0.413 | 0.535 | 0.388 | 1.2e-75 | |
| DICTYBASE|DDB_G0290035 | 1165 | DDB_G0290035 [Dictyostelium di | 0.747 | 0.390 | 0.366 | 1.3e-71 | |
| TIGR_CMR|CJE_0882 | 422 | CJE_0882 "aminotransferase, pu | 0.541 | 0.781 | 0.372 | 2.9e-62 | |
| WB|WBGene00022195 | 957 | Y71H2B.5 [Caenorhabditis elega | 0.807 | 0.514 | 0.303 | 1.1e-52 | |
| TIGR_CMR|BA_5215 | 406 | BA_5215 "cysteine desulfurase | 0.522 | 0.783 | 0.253 | 2.3e-13 | |
| UNIPROTKB|P63516 | 417 | csd "Probable cysteine desulfu | 0.454 | 0.664 | 0.254 | 1.4e-11 | |
| TIGR_CMR|CBU_1357 | 405 | CBU_1357 "selenocysteine lyase | 0.361 | 0.543 | 0.300 | 5.9e-09 | |
| UNIPROTKB|Q9KPQ7 | 404 | csd "Probable cysteine desulfu | 0.441 | 0.665 | 0.256 | 1.3e-08 | |
| TIGR_CMR|VC_2309 | 404 | VC_2309 "aminotransferase, cla | 0.441 | 0.665 | 0.256 | 1.3e-08 |
| UNIPROTKB|Q5LNM5 SPO3178 "Uncharacterized protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 104/268 (38%), Positives = 155/268 (57%)
Query: 46 KSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFY 105
+++ ++ + L +IG+ G L YAD+ ASGR+LR +E Y+ VLPFY
Sbjct: 7 RNVIEADVRAGRLADGLIGEKIMIPGLNGDVPLVYADYVASGRALRQVEQYVSEYVLPFY 66
Query: 106 GNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVP 165
N+HT SY G + T + A I + +G ++DA+IF GSG TA + RL ++GIA
Sbjct: 67 ANSHTEASYCGAYITGLRRAARAEIARLVGAAEDDAVIFAGSGATAGLNRLVSLLGIAQA 126
Query: 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIXXXXXXXXXIEALRSKL 225
+ R VVF+GP+EHHSN+L WR+S A+VVEI + L++ L
Sbjct: 127 A--------------RPVVFIGPYEHHSNILPWRESGAKVVEIPEAPEGGPDLVVLQTAL 172
Query: 226 ELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQ 285
+ + ++G+FSA SNVTGI +DT + RLL +G + +D+A GPY+ ID+ G
Sbjct: 173 RAHAGSDL-MIGAFSAASNVTGIITDTVPVTRLLKAHGALSIWDYAGGGPYLPIDMGEGG 231
Query: 286 TDGYDAIFLSTHKFLGGPGSPGILLMTK 313
DAI +S HKF GGPG+ G+L++ +
Sbjct: 232 LRK-DAIVVSPHKFPGGPGASGVLVVNR 258
|
|
| TIGR_CMR|SPO_3178 SPO_3178 "conserved hypothetical protein" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 465 (168.7 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
Identities = 104/268 (38%), Positives = 155/268 (57%)
Query: 46 KSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFY 105
+++ ++ + L +IG+ G L YAD+ ASGR+LR +E Y+ VLPFY
Sbjct: 7 RNVIEADVRAGRLADGLIGEKIMIPGLNGDVPLVYADYVASGRALRQVEQYVSEYVLPFY 66
Query: 106 GNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVP 165
N+HT SY G + T + A I + +G ++DA+IF GSG TA + RL ++GIA
Sbjct: 67 ANSHTEASYCGAYITGLRRAARAEIARLVGAAEDDAVIFAGSGATAGLNRLVSLLGIAQA 126
Query: 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIXXXXXXXXXIEALRSKL 225
+ R VVF+GP+EHHSN+L WR+S A+VVEI + L++ L
Sbjct: 127 A--------------RPVVFIGPYEHHSNILPWRESGAKVVEIPEAPEGGPDLVVLQTAL 172
Query: 226 ELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQ 285
+ + ++G+FSA SNVTGI +DT + RLL +G + +D+A GPY+ ID+ G
Sbjct: 173 RAHAGSDL-MIGAFSAASNVTGIITDTVPVTRLLKAHGALSIWDYAGGGPYLPIDMGEGG 231
Query: 286 TDGYDAIFLSTHKFLGGPGSPGILLMTK 313
DAI +S HKF GGPG+ G+L++ +
Sbjct: 232 LRK-DAIVVSPHKFPGGPGASGVLVVNR 258
|
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| DICTYBASE|DDB_G0290035 DDB_G0290035 [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 731 (262.4 bits), Expect = 1.3e-71, P = 1.3e-71
Identities = 180/491 (36%), Positives = 262/491 (53%)
Query: 66 NAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHE 125
N+ ++ R +TY D TASGRSL IE Y++N V+P Y NTHT G TT E
Sbjct: 86 NSNNNNNNNSRLITYCDFTASGRSLESIEEYLLNEVIPLYANTHTLSDATGLQTTLFRRE 145
Query: 126 ASNYIKK-CLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVV 184
A +K+ C G +D+++F GSG+TAAI L ++ I S + +K + +
Sbjct: 146 AREIVKRGCRGSNVDDSLLFIGSGSTAAINALIHILDIKYLSSINKKPL----------I 195
Query: 185 FVGPHEHHSNLLSWRQSLAEVVEIXXXXXXXXXIEA------LRSKLELYK--DAKRPIL 236
+GP+EHHSN+L WR++ AEV+ I L L+ Y D+KR I+
Sbjct: 196 LLGPYEHHSNILPWREAGAEVLTCPENNNSKEGIRGGVDLNFLEEILKKYSKLDSKRLII 255
Query: 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGY--DAIFL 294
GSFSA SNV+GI DT + +L +YG + +D+A + PY+ ID+ + Y D IF
Sbjct: 256 GSFSAASNVSGIIEDTIKVTEILKRYGALSIWDYACAAPYIPIDMNPFNDNRYKKDVIFF 315
Query: 295 STHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354
S HKFLGG +PG++L+ K L L + P GGG+V YV N+ T YL + EE+E
Sbjct: 316 SPHKFLGGVSTPGVMLIKKKL--LNNNIPHRPGGGSVLYVTS-NQ--TTYLSNFEEKEEA 370
Query: 355 GTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTST----K 410
GTP ++ IR L F ++E+IG + I + E + +L +N+ +LG+ S +
Sbjct: 371 GTPDIVGSIRCGLVFQLREHIGIDNIYQSEIEHSNHLRLKLNKIKNLVLLGDNSINQFEQ 430
Query: 411 RQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470
+Q I S I EN T LH FVA+LLNDLFGIQ+R CACAGPY
Sbjct: 431 QQPQQQLPIISFLIRY---ENDPTLF---LHHNFVASLLNDLFGIQSRASCACAGPYLQC 484
Query: 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNXXXXXXXXXXXXIAIYGQRFLP 530
LL L++ + + +I + ++PG RI+ + + I + G +F+P
Sbjct: 485 LLGLNQEDNQNLLESIFEKQEIIRPGMVRINVSFTHTLQEIDFIIKAIEFICLNGWKFMP 544
Query: 531 LYNFNIKTGTW 541
LY F + +G W
Sbjct: 545 LYTFVVASGEW 555
|
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| TIGR_CMR|CJE_0882 CJE_0882 "aminotransferase, putative" [Campylobacter jejuni RM1221 (taxid:195099)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 2.9e-62, Sum P(2) = 2.9e-62
Identities = 129/346 (37%), Positives = 199/346 (57%)
Query: 75 KRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHE-ASNYIKKC 133
K+ + + D TAS +L+ +E I + +LP Y NTH+ DS + T ++E A IKK
Sbjct: 13 KKGILHFDFTASALALKCVEKEI-SKILPTYANTHS-DSSLNSFKTQQIYEQARKDIKKS 70
Query: 134 LGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS 193
L + A+I CG+G+++AIK+ QE++GI +P +++E+ + +V VGP+EHHS
Sbjct: 71 LSLDENFALIACGTGSSSAIKKFQELIGIYIPPLVKERYFTQIDKNTLPLVIVGPYEHHS 130
Query: 194 NLLSWRQSLAEVVEIXXXXXXXXXIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTR 253
N LS+R+ L E + I + L L+ K+ KR I+ SFS SNVTGI SD +
Sbjct: 131 NELSFREGLCECIRIPLDKNGEIDFDFLEKTLQ--KNKKRKIIASFSLASNVTGILSDYK 188
Query: 254 SIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTK 313
I+ ++ ++ G FD ++ PY I + YDA+F+S+HK +GG G G+L + K
Sbjct: 189 RISEMVRKFKGIVAFDASSFIPYKNISCQY-----YDALFISSHKLIGGIGGSGLLAIKK 243
Query: 314 ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE 373
L G+ PS GGTV YV+ ++ YL + E E GGTP ++Q+IRA+LAF +K+
Sbjct: 244 DL--CGN-KPSFAAGGTVGYVSRTSQ---CYLCNEEALEEGGTPGILQLIRASLAFKIKD 297
Query: 374 YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNI 419
IG + I+K+EE + E+L N+ + R I +FNI
Sbjct: 298 SIGIKNIEKKEEILKDYFFEKLKTIPNLILYAKNLKTRLPIFAFNI 343
|
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| WB|WBGene00022195 Y71H2B.5 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 553 (199.7 bits), Expect = 1.1e-52, P = 1.1e-52
Identities = 162/533 (30%), Positives = 256/533 (48%)
Query: 23 EFENEQPHHHSESFGAQDMGSVPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYAD 82
+F P S+ + +G+ S+S + L+W+++ IG+ + D PFG R++TY D
Sbjct: 5 KFAENIPDIFSQEEKEEALGARGAENSNSTELLSWMRNDEIGRKSVMDGPFGARKVTYCD 64
Query: 83 HTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAM 142
+TAS R+ IE YI + VLPFYGNTH+ + + TT +HEA I+ G G +D++
Sbjct: 65 YTASARAFTSIETYIQHEVLPFYGNTHSSVTVTAEQTTLFMHEARQEIRAFSGCGDQDSV 124
Query: 143 IFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL 202
IF GSG+T A++ L +M +D+E +V EHHSNLL WR+
Sbjct: 125 IFTGSGSTCAVELLVHLMSDG-------------KDDEEVIVVHSSQEHHSNLLPWRKIA 171
Query: 203 AEVVEIXXXXXXXXXIEALRSKLELYKDAKRPI--LGSFSACSNVTGIYSDTRSIARLLH 260
E I + L++ L+ +++ I +G+F A SN+TGI D +++ ++L
Sbjct: 172 KECRNIEELENGQIDLVHLQNVLKEIRESHGSIKIIGTFCAASNLTGILIDIQNVTKILK 231
Query: 261 QYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGS 320
+ A +DFA++ PY+ I V T DA+F S HKF GG SPG+L++ K++ Q +
Sbjct: 232 MFDAIAIWDFASAAPYIPILVNG--TYPLDAVFFSGHKFPGGVSSPGVLIVKKSIIQ--A 287
Query: 321 FPPSTCGGGTVNYVNGFNE---KDTLYLEDIEERESGGTPQV---IQMIRAALAFWVKEY 374
P GGGTV +VN +E K+ + E+ ++ G ++ ++M R+ +K
Sbjct: 288 TKPKRIGGGTVFFVNSTDEWYLKEVEHREEGGTADAVGAVRLAMAVKMKRSIGEDTIKNL 347
Query: 375 ---IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSF--NIHSSTINSSLG 429
I H V++K L + + + + Q+ L F N S +N G
Sbjct: 348 ESSISHLVLQKIRTIENLVLLGPSVVDHRLPVFSFLIRDPQSQLFFHHNYISVLLNDLFG 407
Query: 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA-GPYGHHLLDLDEAQSYQIRSAIQK 488
T+ GP+ LL + R A P DLD + Q+
Sbjct: 408 IQTRAGC--MCAGPYSQKLLGIDEELSQRFVSAIQESP------DLDRTHLRRQAEYSQQ 459
Query: 489 GYVGVKPGWTRISFPYYMSNXXXXXXXXXXXXIAIYGQRFLPLYNFNIKTGTW 541
++ +PG+TRISFPY+ IA + FL LY N +TG W
Sbjct: 460 EFL--RPGFTRISFPYFFKMAEVDEILEAIRFIAKHAADFLHLYQVNCETGEW 510
|
|
| TIGR_CMR|BA_5215 BA_5215 "cysteine desulfurase SufS" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 198 (74.8 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 90/355 (25%), Positives = 148/355 (41%)
Query: 70 DSPFGKRRLTYADHTA-SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128
D ++L Y D A S + ++ IE + + N H +G T+ A
Sbjct: 14 DQKVNGKQLVYFDSAATSQKPIQVIET-LERYYKEYNSNVHRGVHTLGTKATDAYEGARE 72
Query: 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP 188
++K + + +IF GTT A+ + G+ ++E DE + +
Sbjct: 73 KVRKFINAKSMEEIIFT-CGTTTALNTVAASYGL---ENVKEG------DE----IVISY 118
Query: 189 HEHHSNLLSWRQSL----AEVVEIXXXXXXXXXIEALRSKLELYKDAKRPILGSFSACSN 244
EHHSN++ W+Q A + + IE R + + K + S SN
Sbjct: 119 MEHHSNIIPWQQVAKKTGATLKYLPLQPDGTISIEDARQTIT--PNTK---IVSIMYVSN 173
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G + + I + H+ G D A S P++++DV+ D Y LS HK G P
Sbjct: 174 VLGTINPVKEIGAIAHENGAIMVVDGAQSTPHMKVDVQDLNCDFYA---LSAHKMCG-PT 229
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
G+L K L L + P GG +++V+ ++ T +++ + GTP + I
Sbjct: 230 GIGVLYGKKEL--LNNMEPIEFGGEMIDFVD--LQESTW--KELPWKFEAGTPIIGNAIG 283
Query: 365 AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNI 419
A E IG + I+K E + ALERL + I G R +++FNI
Sbjct: 284 LGAAIDFLEEIGLDNIEKHEHELAQYALERLSEVDGVTIYG--PKHRAGLVTFNI 336
|
|
| UNIPROTKB|P63516 csd "Probable cysteine desulfurase" [Mycobacterium tuberculosis (taxid:1773)] | Back alignment and assigned GO terms |
|---|
Score = 188 (71.2 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 77/302 (25%), Positives = 126/302 (41%)
Query: 137 GQEDAMIFCGSGTTAAI--KRLQEVMGIAVPSILRE-KLIKCLRDEERWVVFVGPHEHHS 193
G+ D +F G+ T + K E + + V +L + + + + + V+ EHH+
Sbjct: 78 GRADIALFVGADTDELVFTKNATEALNL-VSYVLGDSRFERAVGPGD--VIVTTELEHHA 134
Query: 194 NLLSWRQSLAEVVEIXXXXXXXXXIEALRSKLE-LYKDAKRPILGSFSACSNVTGIYSDT 252
NL+ W Q LA + R L+ LY D + ++ +F+ SNVTG+ +
Sbjct: 135 NLIPW-QELAR--RTGATLRWYGVTDDGRIDLDSLYLDDRVKVV-AFTHHSNVTGVLTPV 190
Query: 253 RSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312
+ HQ G D S P+ +D+ G D S HK LG P G+L
Sbjct: 191 SELVSRAHQSGALTVLDACQSVPHQPVDLHEL---GVDFAAFSGHKMLG-PNGIGVLYGR 246
Query: 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK 372
+ L L PP GG + V + Y +R GTP Q++ A A
Sbjct: 247 REL--LAQMPPFLTGGSMIETVT---MEGATYAP-APQRFEAGTPMTSQVVGLAAAARYL 300
Query: 373 EYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTK-RQAILSF---NIHSSTINSSL 428
IG ++ E + A+E L ++ILG TS + R + ++F +H+ + L
Sbjct: 301 GAIGMAAVEAHERELVAAAIEGLSGIDGVRILGPTSMRDRGSPVAFVVEGVHAHDVGQVL 360
Query: 429 GE 430
+
Sbjct: 361 DD 362
|
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| TIGR_CMR|CBU_1357 CBU_1357 "selenocysteine lyase" [Coxiella burnetii RSA 493 (taxid:227377)] | Back alignment and assigned GO terms |
|---|
Score = 164 (62.8 bits), Expect = 5.9e-09, P = 5.9e-09
Identities = 71/236 (30%), Positives = 104/236 (44%)
Query: 184 VFVGPHEHHSNLLSWRQSLAEVVEIXXXXXXXXXIEALRSKLELYKD--AKRPILGSFSA 241
+ + EHHSN++ W Q L E V L ++ Y+ KR L
Sbjct: 115 ILISAMEHHSNIVPW-QLLCERVNAKLKVIPVDDNGVL--DIDAYQRLLTKRTKLVGLIH 171
Query: 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLG 301
SNV G + + + +L HQ D A + + E+DV+ D Y +F S+HK L
Sbjct: 172 ISNVLGTVNPVKDMIQLAHQNKTPVLLDGAQAISHREVDVQDLDCDFY--VF-SSHK-LY 227
Query: 302 GPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ 361
GP G+L KA + L + PP GG ++ V+ F + D Y + + GTP +
Sbjct: 228 GPTGVGVLY-GKAKW-LETMPPYQGGGDMISRVS-FEKTD--Y-NVVPYKFEAGTPNMGG 281
Query: 362 MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSF 417
+I A IG E IK E + A E+L ++I+GN K AI SF
Sbjct: 282 VIGMGAAIDYVTRIGFEKIKLHENELMCYAAEQLQKIPGLRIIGNAPDKASAI-SF 336
|
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| UNIPROTKB|Q9KPQ7 csd "Probable cysteine desulfurase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 78/304 (25%), Positives = 124/304 (40%)
Query: 114 YVGQHTTNMVHEASNYIK----KCLGGGQEDAMIFCGSGTTAAI---KRLQEVMGIAVPS 166
Y QH N VH S+ + G +E F G+ ++ I + E + + S
Sbjct: 46 YYSQHNAN-VHRGSHSLTAQATSQFEGAREQVAQFIGAPSSKNIIWTRGATEALNLIAQS 104
Query: 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----QSLAEVVEIXXXXXXXXXIEALR 222
R L DE + V EHH+N++ W+ Q+ A+VV+I + A R
Sbjct: 105 YARSTLQA--GDE----ILVSETEHHANIVPWQMVAEQTGAKVVKIPMTTTGEFGLAAFR 158
Query: 223 SKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVR 282
L + R + + + +NVTG ++ + HQ G D A + +DVR
Sbjct: 159 QLL-----SPRCKIVALAHITNVTGTRQPIEAVIQAAHQQGAIVVIDGAQGIVHETVDVR 213
Query: 283 SGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342
+ D Y +F S HK L P G+L AL L + PP GG V V+ F D
Sbjct: 214 ALDADFY--VF-SGHK-LYAPAGIGVLYGKTAL--LEAMPPWHGGGKMVEKVS-F---DG 263
Query: 343 LYLEDIEERESGGTPQVIQMIRAALAF-WVKEYIGHEVIKKQEETYIERALERLLPNQNI 401
+ + GTP V I A A W + + ++ ++A + + +I
Sbjct: 264 TTFTGLPGKFEAGTPNVAGAIALATAIDWYQS-LDRAAVEAHLHQLQQQAYQAISQIDDI 322
Query: 402 KILG 405
++LG
Sbjct: 323 RVLG 326
|
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| TIGR_CMR|VC_2309 VC_2309 "aminotransferase, class V" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 158 (60.7 bits), Expect = 1.3e-08, Sum P(2) = 1.3e-08
Identities = 78/304 (25%), Positives = 124/304 (40%)
Query: 114 YVGQHTTNMVHEASNYIK----KCLGGGQEDAMIFCGSGTTAAI---KRLQEVMGIAVPS 166
Y QH N VH S+ + G +E F G+ ++ I + E + + S
Sbjct: 46 YYSQHNAN-VHRGSHSLTAQATSQFEGAREQVAQFIGAPSSKNIIWTRGATEALNLIAQS 104
Query: 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----QSLAEVVEIXXXXXXXXXIEALR 222
R L DE + V EHH+N++ W+ Q+ A+VV+I + A R
Sbjct: 105 YARSTLQA--GDE----ILVSETEHHANIVPWQMVAEQTGAKVVKIPMTTTGEFGLAAFR 158
Query: 223 SKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVR 282
L + R + + + +NVTG ++ + HQ G D A + +DVR
Sbjct: 159 QLL-----SPRCKIVALAHITNVTGTRQPIEAVIQAAHQQGAIVVIDGAQGIVHETVDVR 213
Query: 283 SGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342
+ D Y +F S HK L P G+L AL L + PP GG V V+ F D
Sbjct: 214 ALDADFY--VF-SGHK-LYAPAGIGVLYGKTAL--LEAMPPWHGGGKMVEKVS-F---DG 263
Query: 343 LYLEDIEERESGGTPQVIQMIRAALAF-WVKEYIGHEVIKKQEETYIERALERLLPNQNI 401
+ + GTP V I A A W + + ++ ++A + + +I
Sbjct: 264 TTFTGLPGKFEAGTPNVAGAIALATAIDWYQS-LDRAAVEAHLHQLQQQAYQAISQIDDI 322
Query: 402 KILG 405
++LG
Sbjct: 323 RVLG 326
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.8.1.7 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00034824001 | SubName- Full=Chromosome chr4 scaffold_73, whole genome shotgun sequence; (623 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 609 | |||
| COG0520 | 405 | COG0520, csdA, Selenocysteine lyase/Cysteine desul | 2e-72 | |
| pfam00266 | 370 | pfam00266, Aminotran_5, Aminotransferase class-V | 5e-40 | |
| TIGR01979 | 403 | TIGR01979, sufS, cysteine desulfurases, SufSfamily | 4e-31 | |
| cd06453 | 373 | cd06453, SufS_like, Cysteine desulfurase (SufS)-li | 2e-30 | |
| TIGR01977 | 376 | TIGR01977, am_tr_V_EF2568, cysteine desulfurase fa | 8e-17 | |
| PLN02855 | 424 | PLN02855, PLN02855, Bifunctional selenocysteine ly | 9e-16 | |
| PRK09295 | 406 | PRK09295, PRK09295, bifunctional cysteine desulfur | 5e-15 | |
| TIGR03392 | 398 | TIGR03392, FeS_syn_CsdA, cysteine desulfurase, cat | 2e-12 | |
| PRK10874 | 401 | PRK10874, PRK10874, cysteine sulfinate desulfinase | 3e-12 | |
| COG1104 | 386 | COG1104, NifS, Cysteine sulfinate desulfinase/cyst | 7e-09 | |
| TIGR01976 | 397 | TIGR01976, am_tr_V_VC1184, cysteine desulfurase fa | 3e-07 | |
| cd06450 | 345 | cd06450, DOPA_deC_like, DOPA decarboxylase family | 3e-07 | |
| PRK04366 | 481 | PRK04366, PRK04366, glycine dehydrogenase subunit | 8e-06 | |
| cd01494 | 170 | cd01494, AAT_I, Aspartate aminotransferase (AAT) s | 6e-05 | |
| COG3844 | 407 | COG3844, COG3844, Kynureninase [Amino acid transpo | 7e-05 | |
| COG1003 | 496 | COG1003, GcvP, Glycine cleavage system protein P ( | 1e-04 | |
| TIGR04343 | 370 | TIGR04343, egtE_PLP_lyase, ergothioneine biosynthe | 5e-04 | |
| TIGR03402 | 379 | TIGR03402, FeS_nifS, cysteine desulfurase NifS | 6e-04 | |
| PLN02651 | 364 | PLN02651, PLN02651, cysteine desulfurase | 0.002 | |
| COG0075 | 383 | COG0075, COG0075, Serine-pyruvate aminotransferase | 0.002 | |
| TIGR01814 | 406 | TIGR01814, kynureninase, kynureninase | 0.003 |
| >gnl|CDD|223594 COG0520, csdA, Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 237 bits (608), Expect = 2e-72
Identities = 125/453 (27%), Positives = 189/453 (41%), Gaps = 72/453 (15%)
Query: 74 GKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKC 133
+ L Y D+ A+ + + + + + + N H + + T++ A + +
Sbjct: 19 VGKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARF 78
Query: 134 LGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS 193
L D ++F GTT A+ + +G ++ DE + V EHHS
Sbjct: 79 LNADSSDEIVF-TRGTTEALNLVARGLGRSLK----------PGDE----IVVSDLEHHS 123
Query: 194 NLLSWRQSL----AEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY 249
N++ W++ A+V I LDDDGLLD++AL + + L + S SNVTG
Sbjct: 124 NIVPWQELAKRTGAKVRVIPLDDDGLLDLDALEKLIT-----PKTKLVALSHVSNVTGTV 178
Query: 250 SDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGIL 309
+ + IA L H++G D A + ++ IDV Q G D + S HK+L GP G+L
Sbjct: 179 NPVKEIAELAHEHGALVLVDAAQAAGHLPIDV---QELGCDFLAFSGHKWLLGPTGIGVL 235
Query: 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAF 369
+ K L L P GGG + YV + + + L ++ R GTP + I A A
Sbjct: 236 YVRKEL--LEELEPFLGGGGMIEYV---SRDEGVTLAELPLRFEAGTPNIAGAIGLAAAL 290
Query: 370 WVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG 429
IG E I+ E E LE L ++I G R I+SFN+
Sbjct: 291 DYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNV---------- 340
Query: 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKG 489
K +H VATLL++ GI R G CA P H LL +D
Sbjct: 341 --------KGIHPHDVATLLDEK-GIAVRAGHHCAQPL-HRLLGVDAT------------ 378
Query: 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522
R S Y + E+ + LEAL+
Sbjct: 379 --------IRASLHLYNTEEDVDRLLEALKKAL 403
|
Length = 405 |
| >gnl|CDD|215829 pfam00266, Aminotran_5, Aminotransferase class-V | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 5e-40
Identities = 119/420 (28%), Positives = 174/420 (41%), Gaps = 88/420 (20%)
Query: 104 FYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163
+ GN H ++G+ T EA + + + ++ +IF SGTT AI
Sbjct: 26 YNGNVHRGVHHLGKEATQAYEEAREKVAEFINAPSDEEIIFT-SGTTEAIN--------L 76
Query: 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIGLDDDGLLDIE 219
V L L DE + V EHH+NL+ W +++ A V I +D +GLLD++
Sbjct: 77 VAISLGRSLKP--GDE----ILVTEMEHHANLVPWQELAKRTGATVRVIPVDPNGLLDLD 130
Query: 220 ALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEI 279
AL L R L + + SNVTG + I +L H+YG D A + + I
Sbjct: 131 ALEKLL-----TPRTKLVAITHVSNVTGTVNPVEEIGKLAHEYGALVVVDAAQAVGHRPI 185
Query: 280 DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNE 339
DV Q G D + S HK G G G+L + L L PP GGG +
Sbjct: 186 DV---QALGVDFLAFSGHKLYGPTGI-GVLYGRRDL--LEKLPPLLGGGGMI-------- 231
Query: 340 KDTLYLEDIEERES-----GGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERAL 392
DT+ L++ ++ GTP + +I AAL ++ E IG E I+K E
Sbjct: 232 -DTVSLQETTFADAPSKFEAGTPNIAGIIGLGAALD-YLAE-IGLEAIEKHERELAAYLY 288
Query: 393 ERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDL 452
ERLL I++ G + +R +I+SFN +H VATLL++
Sbjct: 289 ERLLAIPGIRLYGPPAERRPSIISFNFPG------------------VHPHDVATLLDE- 329
Query: 453 FGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512
GI R G CA P L + + R S +Y + EE +
Sbjct: 330 RGIAVRSGHHCAQPLMVRL---------GLGGTL------------RASLYFYNTEEEVD 368
|
This domain is found in amino transferases, and other enzymes including cysteine desulphurase EC:4.4.1.-. Length = 370 |
| >gnl|CDD|131034 TIGR01979, sufS, cysteine desulfurases, SufSfamily | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 4e-31
Identities = 109/422 (25%), Positives = 167/422 (39%), Gaps = 78/422 (18%)
Query: 105 YGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164
N H + T + K + ++ ++F GTT +I + G
Sbjct: 46 NANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFT-RGTTESINLVAYSWGD-- 102
Query: 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIGLDDDGLLDIEA 220
S L+ DE + + EHH+N++ W ++ A + I LDDDG LD++
Sbjct: 103 -SNLKAG------DE----IVISEMEHHANIVPWQLLAERTGATLKFIPLDDDGTLDLDD 151
Query: 221 LRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID 280
L L ++ L + + SNV G + IA+L HQ G D A + P++ +D
Sbjct: 152 LEKLLT-----EKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVD 206
Query: 281 VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEK 340
V Q D S HK GP G+L + L L PP GG + V + +
Sbjct: 207 V---QALDCDFYVFSGHKMY-GPTGIGVLYGKEEL--LEQMPPFLGGGEMIAEV---SFE 257
Query: 341 DTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPN 398
+T Y E + GTP + +I AA+ +++ IG E I+ E ALERL
Sbjct: 258 ETTYNE-APHKFEAGTPNIAGVIGLGAAID-YLEA-IGLENIEAHEHELTAYALERLGEI 314
Query: 399 QNIKILG-NTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA 457
++I G + R I+SFN+ + +H V T+L D GI
Sbjct: 315 PGLRIYGPRDAEDRGGIISFNV------------------EGVHPHDVGTIL-DEEGIAV 355
Query: 458 RGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEA 517
R G CA P + P R SF Y + E+ + +EA
Sbjct: 356 RSGHHCAQPL-MRRFGV--------------------PATCRASFYIYNTEEDIDALVEA 394
Query: 518 LE 519
L+
Sbjct: 395 LK 396
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 403 |
| >gnl|CDD|99746 cd06453, SufS_like, Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 2e-30
Identities = 99/336 (29%), Positives = 144/336 (42%), Gaps = 66/336 (19%)
Query: 190 EHHSNLLSWRQSLAE-----VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHHSN++ W+Q LAE + + +DDDG LD+EAL L +R L + + SN
Sbjct: 97 EHHSNIVPWQQ-LAERTGAKLKVVPVDDDGQLDLEALEKLL-----TERTKLVAVTHVSN 150
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G + + I + H+ G D A S ++ +DV Q G D + S HK LG G
Sbjct: 151 VLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDV---QDLGCDFLAFSGHKMLGPTG 207
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI- 363
G+L + L L PP GG + V + D+ + GTP + I
Sbjct: 208 I-GVLYGKEEL--LEEMPPYGGGGEMIEEV----SFEETTYADLPHKFEAGTPNIAGAIG 260
Query: 364 -RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSS 422
AA+ ++++ IG E I E ALERL +++ G+ R ++SFN+
Sbjct: 261 LGAAID-YLEK-IGMEAIAAHEHELTAYALERLSEIPGVRVYGDAE-DRAGVVSFNL--- 314
Query: 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQI 482
+ +H VAT+L D +GI R G CA P L +
Sbjct: 315 ---------------EGIHPHDVATIL-DQYGIAVRAGHHCAQPL-MRRLGV-------- 349
Query: 483 RSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518
PG R SF Y + EE + +EAL
Sbjct: 350 ------------PGTVRASFGLYNTEEEIDALVEAL 373
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. Length = 373 |
| >gnl|CDD|131032 TIGR01977, am_tr_V_EF2568, cysteine desulfurase family protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 8e-17
Identities = 96/412 (23%), Positives = 149/412 (36%), Gaps = 86/412 (20%)
Query: 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRD 178
+ V E + K ++F + TTA + IA+ +L+E
Sbjct: 42 ASREVEETRQLLAKLFNAPSSAHVVFTNNATTA--------LNIALKGLLKEG------- 86
Query: 179 EERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL-----DDDGLLDIEALRSKLELYKDAKR 233
V P EH+S + + L E + + + D++GL+ E ++ ++ + K
Sbjct: 87 ---DHVITTPMEHNS-VARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIK--TNTKL 140
Query: 234 PILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIF 293
++ S SNVTG I L + G F D A + + ID+ D +
Sbjct: 141 IVV---SHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDM---TELAIDMLA 194
Query: 294 LSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353
+ HK L GP G L + + P GG G + ++ +R
Sbjct: 195 FTGHKGLLGPQGTGGLYIREG----IKLKPLKSGG------TGSHSALIDQPSELPDRFE 244
Query: 354 GGTPQV--IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILG-NTSTK 410
GT I + A + F K IG I K+E E+ L L +KI G
Sbjct: 245 SGTLNTPGIAGLNAGIKFIEK--IGIANIAKKECMLTEKLLNGLREINKVKIYGPADPAN 302
Query: 411 RQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470
R ++SF + E +E VA +L++ F I R G CA P H
Sbjct: 303 RVGVVSFTV----------EGIDSE--------EVADILDEKFDIATRTGLHCA-PLAHK 343
Query: 471 LLDLDEAQSYQIRSAIQKGYVGVKP-GWTRISFPYYMSNEEFEFTLEALEFI 521
+ G G R+S Y+ + EE E LEAL I
Sbjct: 344 TI-------------------GTFATGTIRLSLGYFNTEEEIEKLLEALSEI 376
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown [Unknown function, Enzymes of unknown specificity]. Length = 376 |
| >gnl|CDD|215460 PLN02855, PLN02855, Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 9e-16
Identities = 81/291 (27%), Positives = 122/291 (41%), Gaps = 44/291 (15%)
Query: 190 EHHSNLLSWRQSLAE-----VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHHSN++ W Q +A+ + +GL D +LD+E L+ L +++ L + SN
Sbjct: 131 EHHSNIVPW-QLVAQKTGAVLKFVGLTPDEVLDVEQLKELL-----SEKTKLVATHHVSN 184
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G I H G D S P++ +DV QT G D + S+HK G P
Sbjct: 185 VLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDV---QTLGADFLVASSHKMCG-PT 240
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
G L L L S PP GG ++ V F + T Y R GTP + + I
Sbjct: 241 GIGFLWGKSDL--LESMPPFLGGGEMISDV--FLDHST-YAPP-PSRFEAGTPAIGEAIG 294
Query: 365 -AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTK---RQAILSFNIH 420
A ++ E IG + I + E E+L ++I G ++ R A+ +FN+
Sbjct: 295 LGAAIDYLSE-IGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNV- 352
Query: 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL 471
E +H ++T L+ G+ R G CA P +L
Sbjct: 353 ---------EG--------IHPTDLSTFLDQQHGVAIRSGHHCAQPLHRYL 386
|
Length = 424 |
| >gnl|CDD|181766 PRK09295, PRK09295, bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Score = 77.1 bits (190), Expect = 5e-15
Identities = 78/281 (27%), Positives = 122/281 (43%), Gaps = 39/281 (13%)
Query: 190 EHHSNLLSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245
EHH+N++ W+ + AE+ I L+ DG L +E L + + +R L + + SNV
Sbjct: 122 EHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPALFD-----ERTRLLAITHVSNV 176
Query: 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS 305
G + + L HQ+G D A + + +DV++ D Y +F S HK L GP
Sbjct: 177 LGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQALDCDFY--VF-SGHK-LYGPTG 232
Query: 306 PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRA 365
GIL + +AL Q PP GG + V+ + T + R GTP +I
Sbjct: 233 IGILYVKEALLQ--EMPPWEGGGSMIATVS--LTEGTTW-AKAPWRFEAGTPNTGGIIGL 287
Query: 366 ALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTIN 425
A +G I + E+ + AL +L ++ + G R +++FN
Sbjct: 288 GAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGP--QNRLGVIAFN------- 338
Query: 426 SSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
LG++ H V + L D +GI R G CA P
Sbjct: 339 --LGKH---------HAYDVGSFL-DNYGIAVRTGHHCAMP 367
|
Length = 406 |
| >gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 2e-12
Identities = 96/385 (24%), Positives = 147/385 (38%), Gaps = 73/385 (18%)
Query: 97 IINNVLPFY----GNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152
+I+ FY G H Q T A + + L + +++ GTT +
Sbjct: 32 VIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWT-RGTTES 90
Query: 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEI 208
I + S R +L DE + V EHH+NL+ W +Q+ A+VV++
Sbjct: 91 IN-------LVAQSYARPRLQP--GDE----IIVSEAEHHANLIPWLMVAQQTGAKVVKL 137
Query: 209 GLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACF 268
+ D L DI L L R + + SNVTG D L HQYG
Sbjct: 138 PIGADLLPDIRQLPELL-----TPRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVV 192
Query: 269 DFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGG 328
D A + DV++ D Y S HK L GP G+L L L + PP GG
Sbjct: 193 DGAQGVVHGPPDVQALDIDFYA---FSGHK-LYGPTGIGVLYGKTEL--LEAMPPWQGGG 246
Query: 329 GTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGH--EVIKKQE 384
+++V+ F+ + + R GTP + +I AAL W+ + E
Sbjct: 247 KMLSHVS-FDGFIP---QAVPHRFEAGTPNIAGVIGLSAALE-WLTDIDIAAAEAWSVSL 301
Query: 385 ETYIERALERLLPNQNIKILGNTSTKRQAILSFN---IHSSTINSSLGENTKTETDKPLH 441
E L +L ++ + G++ +L+F+ +H S + + L E+
Sbjct: 302 ADLAEERLAQLPGFRSFRCPGSS------LLAFDFAGVHHSDLAALLAES---------- 345
Query: 442 GPFVATLLNDLFGIQARGGCACAGP 466
GI R G CA P
Sbjct: 346 ------------GIALRAGQHCAQP 358
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 398 |
| >gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 81/296 (27%), Positives = 119/296 (40%), Gaps = 59/296 (19%)
Query: 184 VFVGPHEHHSNLLSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSF 239
+ V EHH+NL+ W +Q+ A+VV++ L D L D++ L + R + +
Sbjct: 112 IIVSEAEHHANLVPWLMVAQQTGAKVVKLPLGADRLPDVDLLPELIT-----PRTRILAL 166
Query: 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKF 299
SNVTG D L HQ G D A + DV++ D Y S HK
Sbjct: 167 GQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQALDIDFYA---FSGHK- 222
Query: 300 LGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVN--GFNEKDTLYLEDIEERESGGTP 357
L GP G+L L L + P GG + V+ GF + R GTP
Sbjct: 223 LYGPTGIGVLYGKSEL--LEAMSPWQGGGKMLTEVSFDGFTP------QSAPWRFEAGTP 274
Query: 358 QVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQ--A 413
V +I AAL W+ + + Q E++ R+L L + K+ G S + Q +
Sbjct: 275 NVAGVIGLSAALE-WLADIDIN-----QAESW-SRSLATLAEDALAKLPGFRSFRCQDSS 327
Query: 414 ILSFN---IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466
+L+F+ +H S + + L E GI R G CA P
Sbjct: 328 LLAFDFAGVHHSDLVTLLAEY----------------------GIALRAGQHCAQP 361
|
Length = 401 |
| >gnl|CDD|224029 COG1104, NifS, Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.6 bits (140), Expect = 7e-09
Identities = 97/450 (21%), Positives = 148/450 (32%), Gaps = 113/450 (25%)
Query: 104 FYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGT---TAAIKRLQEVM 160
+GN + S+ G+ V EA I K LG + +IF T AIK
Sbjct: 28 VFGNPSSLHSF-GREARKAVEEAREQIAKLLGA-DPEEIIFTSGATESNNLAIK------ 79
Query: 161 GIAVPSILREKLIKCLRDEERWVVFVGPHEHHS--NLLSWRQSL-AEVVEIGLDDDGLLD 217
+ EH + N + + EV + +D +GL+D
Sbjct: 80 -----GAALAYRNAQKGKH----IITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVD 130
Query: 218 IEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277
+E L L IL S +N TG I + + G D + +
Sbjct: 131 LEQLEEAL-----RPDTILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKI 185
Query: 278 EIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGG--------G 329
ID+ G D + S HKF GGP G L + + P GG G
Sbjct: 186 PIDLEE---LGVDLLSFSAHKF-GGPKGIGALYVRPGV----RLEPLIHGGGQERGLRSG 237
Query: 330 TVN--YVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETY 387
T N + GF + + +E++EE ++ ++ R L + E I + Y
Sbjct: 238 TENVPGIVGFGKAAEIAVEELEEE----NARLRKL-RDRLEDGLLEII--------PDVY 284
Query: 388 IERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVAT 447
+ E LPN IL+F+ + G +
Sbjct: 285 LNGDDEPRLPN---------------ILNFSFPG------------------VEGESLLL 311
Query: 448 LLNDLFGIQARGGCACAGPYGH--HLLD---LDEAQSYQIRSAIQKGYVGVKPGWTRISF 502
L DL GI G AC+ H+L + E +I R S
Sbjct: 312 AL-DLAGIAVSTGSACSSGSLEPSHVLRAMGISEE---LAHGSI------------RFSL 355
Query: 503 PYYMSNEEFEFTLEALEFIAIYGQRFLPLY 532
+ + EE + EAL+ I + PL+
Sbjct: 356 GRFTTEEEIDAAAEALKEIIKRLRELSPLW 385
|
Length = 386 |
| >gnl|CDD|233664 TIGR01976, am_tr_V_VC1184, cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 3e-07
Identities = 74/313 (23%), Positives = 98/313 (31%), Gaps = 58/313 (18%)
Query: 176 LRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD--------DDGLLDIEALRSKLEL 227
DE V V +H +N+ W Q AE G G L + L S L
Sbjct: 103 PGDE----VIVTRLDHEANISPWLQ-AAERA--GAKVKWARVDEATGELHPDDLASLL-- 153
Query: 228 YKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTD 287
+ R L + +A SN G D +I L+H G D P+ IDV Q
Sbjct: 154 ---SPRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDV---QAT 207
Query: 288 GYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP----PSTCGG------GTVNYVNGF 337
G D + S +KF G GIL L + P S G GT Y
Sbjct: 208 GADFLTCSAYKFFGPH--MGILWGRPEL-LMNLPPYKLTFSYDTGPERFELGTPQYELLA 264
Query: 338 NEKDTL-YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396
+ YL + E +G R L + I E E L L
Sbjct: 265 GVVAAVDYLAGLGESANGSR-------RERLV------ASFQAIDAYENRLAEYLLVGLS 311
Query: 397 PNQNIKILG-NTSTKRQAILSFNIH---SSTINSSLGENTKTETDKPLHGPFVATLLNDL 452
+ + G R +SF +H + L + G F A L
Sbjct: 312 DLPGVTLYGVARLAARVPTVSFTVHGLPPQRVVRRLADQGIDAWA----GHFYAVRLLRR 367
Query: 453 FGIQARGGCACAG 465
G+ GG G
Sbjct: 368 LGLNDEGGVVRVG 380
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase [Unknown function, Enzymes of unknown specificity]. Length = 397 |
| >gnl|CDD|99743 cd06450, DOPA_deC_like, DOPA decarboxylase family | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 47/210 (22%), Positives = 79/210 (37%), Gaps = 35/210 (16%)
Query: 119 TTNMVHEASNYIKKCLGGGQEDAM-IFCGSGTTAAIKRLQEVMGI--AVPSILREKLIKC 175
T M E N++ K G EDA +F SG + + ++ + A +
Sbjct: 36 ATEMEAEVVNWLAKLFGLPSEDADGVFT-SGGSESN-----LLALLAARDRARKRLKAGG 89
Query: 176 LRDEERWVVFVGPHEHHSNLLSWRQSLA----EVVEIGLDDDGLLDIEALRSKL-ELYKD 230
R ++ V+ H S ++ A +V + +D+DG +D EAL + + E +
Sbjct: 90 GRGIDKLVIVCSDQAHVS----VEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAE 145
Query: 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQY----------GGFACFDFAASGPYVEID 280
PI+ +A + TG IA L +Y GGF P+ E
Sbjct: 146 GLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDAAYGGFLL-------PFPEPR 198
Query: 281 VRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310
+ D+I + HK+ P +L
Sbjct: 199 HLDFGIERVDSISVDPHKYGLVPLGCSAVL 228
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. Length = 345 |
| >gnl|CDD|235292 PRK04366, PRK04366, glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 8e-06
Identities = 36/115 (31%), Positives = 56/115 (48%), Gaps = 27/115 (23%)
Query: 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSA-----CSNVTGIY-SDTRSIAR 257
+VVEI ++DGL+D+EAL++ + G +A N G++ + IA
Sbjct: 184 KVVEIPSNEDGLVDLEALKAAV-----------GEDTAALMLTNPNTLGLFERNILEIAE 232
Query: 258 LLHQYGGFACFDFAASGPYVEIDVRSGQTD-GYDAIFLSTHK-FL-----GGPGS 305
++H+ GG +D A + R G D G+D + L+ HK F GGPGS
Sbjct: 233 IVHEAGGLLYYDGANLNAILGK-ARPG--DMGFDVVHLNLHKTFSTPHGGGGPGS 284
|
Length = 481 |
| >gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 6e-05
Identities = 40/190 (21%), Positives = 67/190 (35%), Gaps = 23/190 (12%)
Query: 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERW 182
+ E + + L G + A +F SGT A + A L
Sbjct: 2 LEELEEKLARLLQPGNDKA-VFVPSGT-GANE--------AALLALLGP--------GDE 43
Query: 183 VVFVGPHEHHSNLLSWRQSL-AEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSA 241
V+ H S + A+ V + +DD G ++ LE K L +
Sbjct: 44 VIVDAN-GHGSRYWVAAELAGAKPVPVPVDDAGYGGLDVA--ILEELKAKPNVALIVITP 100
Query: 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLG 301
+ G+ + I ++ +YG D A++G G D + S HK LG
Sbjct: 101 NTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNLG 160
Query: 302 GPGSPGILLM 311
G G G++++
Sbjct: 161 GEGG-GVVIV 169
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170 |
| >gnl|CDD|226363 COG3844, COG3844, Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 7e-05
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 4/71 (5%)
Query: 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFL-GGPG 304
TG D R+I L HQ+G +D A S V +D+ + G D ++K+L GGPG
Sbjct: 179 TGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAA---GADFAIGCSYKYLNGGPG 235
Query: 305 SPGILLMTKAL 315
+P L +
Sbjct: 236 APAGLFVAPRH 246
|
Length = 407 |
| >gnl|CDD|223935 COG1003, GcvP, Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 1e-04
Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 23/113 (20%)
Query: 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSAC----SNVTGIYS-DTRSIARL 258
+VV + D++G +D++ LR+K E + +A + G++ D R I +
Sbjct: 180 KVVVVKCDENGNVDLDDLRAKAE----------DNLAALMITNPSTLGVFEEDIREICEI 229
Query: 259 LHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFL------GGPGS 305
+H+ GG +D A V + R G G+D + L+ HK GGPG+
Sbjct: 230 VHEAGGQVYYDGANLNAIVGL-ARPGDM-GFDVVHLNLHKTFCIPHGGGGPGA 280
|
Length = 496 |
| >gnl|CDD|234554 TIGR04343, egtE_PLP_lyase, ergothioneine biosynthesis PLP-dependent enzyme EgtE | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 5e-04
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 10/129 (7%)
Query: 183 VVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSAC 242
V P E+ NL EV E+ +DDDG LD++ S L A P L +
Sbjct: 97 TVACLPGEYGPNLAIMAAHGFEVRELPVDDDGRLDVDGAASALR----ADPPALVHLTVV 152
Query: 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGG 302
+ G ++A L G D A + +++ V G DA + S+ K+L G
Sbjct: 153 GSHRGTVQPAAAVAELCRAAGVPLVVDAAQALGHLDCAV------GADAYYSSSRKWLAG 206
Query: 303 PGSPGILLM 311
P G+L +
Sbjct: 207 PRGVGVLAV 215
|
Members of this protein family are the pyridoxal phosphate-dependent enzyme EgtE, which catalyzes the final step in the biosynthesis of ergothioneine [Biosynthesis of cofactors, prosthetic groups, and carriers, Glutathione and analogs]. Length = 370 |
| >gnl|CDD|132443 TIGR03402, FeS_nifS, cysteine desulfurase NifS | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 57/236 (24%), Positives = 91/236 (38%), Gaps = 44/236 (18%)
Query: 80 YADHTASGRSLRYIENYIINNVLPF----YGNTHTCDSYVGQHTTNMVHEASNYIKKCLG 135
Y D+ A+ R ++ ++ +LP+ +GN + S+ G V EA + K LG
Sbjct: 2 YLDNNATTR----VDPEVLEAMLPYFTEYFGNPSSMHSF-GGEVGKAVEEAREQVAKLLG 56
Query: 136 GGQEDAMIFCGSGT---TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHH 192
+ D +IF GT AIK S L E+ + EH
Sbjct: 57 A-EPDEIIFTSGGTESDNTAIK-----------SALAA-------QPEKRHIITTAVEHP 97
Query: 193 S--NLLSWRQSLA-EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY 249
+ +L + +V + +D++G LD+E LR+ + L S +N TG
Sbjct: 98 AVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAI-----TDDTALVSVMWANNETGTI 152
Query: 250 SDTRSIARLLHQYGG-FACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
I + + G F A G + ID+ + D + LS HK G G
Sbjct: 153 FPIEEIGEIAKERGALFHTDAVQAVG-KIPIDL---KEMNIDMLSLSGHKLHGPKG 204
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. Length = 379 |
| >gnl|CDD|178257 PLN02651, PLN02651, cysteine desulfurase | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 73/319 (22%), Positives = 116/319 (36%), Gaps = 80/319 (25%)
Query: 97 IINNVLPF----YGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152
+++ +LPF +GN H+ G + + V +A + +G +IF T
Sbjct: 15 VLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGA-DPKEIIFTSGAT--- 70
Query: 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR---QSLAEVVEIG 209
E +A+ ++ +D+++ V+ EH L S R Q EV +
Sbjct: 71 -----ESNNLAIKGVMHF-----YKDKKKHVITTQT-EHKCVLDSCRHLQQEGFEVTYLP 119
Query: 210 LDDDGLLDIEALRSKLELYKDAKRP--ILGSFSACSNVTGIYSDTRSIARLLHQYGGFAC 267
+ DGL+D++ L + A RP L S A +N G+ I L +
Sbjct: 120 VKSDGLVDLDELAA-------AIRPDTALVSVMAVNNEIGVIQPVEEIGELCREKKVLFH 172
Query: 268 FDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALY----QLGSFPP 323
D A + + +DV G D + +S HK GP G ALY P
Sbjct: 173 TDAAQAVGKIPVDVD---DLGVDLMSISGHKI-YGPKGVG------ALYVRRRPRVRLEP 222
Query: 324 STCGGGTVNYVNGFNEKDTLYLEDIEERESG---GT---PQVIQMIRAALAFWVKEYIGH 377
GGG +E G GT P V+ + A +KE
Sbjct: 223 LMSGGG---------------------QERGRRSGTENTPLVVGLGAAC-ELAMKE---- 256
Query: 378 EVIKKQEETYIERALERLL 396
+E +++ ERLL
Sbjct: 257 ---MDYDEKHMKALRERLL 272
|
Length = 364 |
| >gnl|CDD|223153 COG0075, COG0075, Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.002
Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 203 AEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY 262
AEVV + ++ +D E + L+ D K + TG+ + + IA+ ++
Sbjct: 104 AEVVVLEVEWGEAVDPEEVEEALDKDPDIK---AVAVVHNETSTGVLNPLKEIAKAAKEH 160
Query: 263 GGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPG 307
G D +S + V G D + K LG P PG
Sbjct: 161 GALLIVDAVSSLGGEPLKVDE---WGIDVAITGSQKALGAP--PG 200
|
Length = 383 |
| >gnl|CDD|130873 TIGR01814, kynureninase, kynureninase | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.003
Identities = 29/102 (28%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 206 VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGF 265
V+I ++ L +E + +E D IL S TG D +I R H G
Sbjct: 146 VQIEPREEETLRLEDILDTIEKNGDDIAVIL--LSGVQYYTGQLFDMAAITRAAHAKGAL 203
Query: 266 ACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFL-GGPGSP 306
FD A + V +D+ G D T+K+L GPG+
Sbjct: 204 VGFDLAHAVGNVPLDL---HDWGVDFACWCTYKYLNAGPGAG 242
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen [Energy metabolism, Amino acids and amines]. Length = 406 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| COG0520 | 405 | csdA Selenocysteine lyase/Cysteine desulfurase [Po | 100.0 | |
| COG1104 | 386 | NifS Cysteine sulfinate desulfinase/cysteine desul | 100.0 | |
| PRK09295 | 406 | bifunctional cysteine desulfurase/selenocysteine l | 100.0 | |
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| PLN02855 | 424 | Bifunctional selenocysteine lyase/cysteine desulfu | 100.0 | |
| TIGR03392 | 398 | FeS_syn_CsdA cysteine desulfurase, catalytic subun | 100.0 | |
| PRK10874 | 401 | cysteine sulfinate desulfinase; Provisional | 100.0 | |
| TIGR01979 | 403 | sufS cysteine desulfurases, SufS subfamily. This m | 100.0 | |
| PF00266 | 371 | Aminotran_5: Aminotransferase class-V; InterPro: I | 100.0 | |
| PLN02651 | 364 | cysteine desulfurase | 100.0 | |
| TIGR03402 | 379 | FeS_nifS cysteine desulfurase NifS. Members of thi | 100.0 | |
| TIGR03403 | 382 | nifS_epsilon cysteine desulfurase, NifS family, ep | 100.0 | |
| KOG1549 | 428 | consensus Cysteine desulfurase NFS1 [Amino acid tr | 100.0 | |
| TIGR02006 | 402 | IscS cysteine desulfurase IscS. This model represe | 100.0 | |
| TIGR01977 | 376 | am_tr_V_EF2568 cysteine desulfurase family protein | 100.0 | |
| PRK14012 | 404 | cysteine desulfurase; Provisional | 100.0 | |
| PRK02948 | 381 | cysteine desulfurase; Provisional | 100.0 | |
| TIGR01976 | 397 | am_tr_V_VC1184 cysteine desulfurase family protein | 100.0 | |
| cd06453 | 373 | SufS_like Cysteine desulfurase (SufS)-like. This f | 100.0 | |
| TIGR01814 | 406 | kynureninase kynureninase. This model describes ky | 100.0 | |
| TIGR03235 | 353 | DNA_S_dndA cysteine desulfurase DndA. This model d | 100.0 | |
| PLN02409 | 401 | serine--glyoxylate aminotransaminase | 100.0 | |
| cd06451 | 356 | AGAT_like Alanine-glyoxylate aminotransferase (AGA | 100.0 | |
| PRK03080 | 378 | phosphoserine aminotransferase; Provisional | 100.0 | |
| TIGR01788 | 431 | Glu-decarb-GAD glutamate decarboxylase. This model | 100.0 | |
| TIGR02326 | 363 | transamin_PhnW 2-aminoethylphosphonate--pyruvate t | 100.0 | |
| PTZ00094 | 452 | serine hydroxymethyltransferase; Provisional | 100.0 | |
| PRK02769 | 380 | histidine decarboxylase; Provisional | 100.0 | |
| cd00611 | 355 | PSAT_like Phosphoserine aminotransferase (PSAT) fa | 100.0 | |
| PRK13479 | 368 | 2-aminoethylphosphonate--pyruvate transaminase; Pr | 99.97 | |
| cd06450 | 345 | DOPA_deC_like DOPA decarboxylase family. This fami | 99.97 | |
| PLN03032 | 374 | serine decarboxylase; Provisional | 99.97 | |
| PRK13520 | 371 | L-tyrosine decarboxylase; Provisional | 99.97 | |
| TIGR01364 | 349 | serC_1 phosphoserine aminotransferase. This model | 99.97 | |
| TIGR03301 | 355 | PhnW-AepZ 2-aminoethylphosphonate aminotransferase | 99.97 | |
| PRK09331 | 387 | Sep-tRNA:Cys-tRNA synthetase; Provisional | 99.97 | |
| COG0075 | 383 | Serine-pyruvate aminotransferase/archaeal aspartat | 99.97 | |
| PRK05355 | 360 | 3-phosphoserine/phosphohydroxythreonine aminotrans | 99.96 | |
| TIGR03812 | 373 | tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe | 99.96 | |
| TIGR01366 | 361 | serC_3 phosphoserine aminotransferase, putative. T | 99.96 | |
| PRK04366 | 481 | glycine dehydrogenase subunit 2; Validated | 99.96 | |
| COG3844 | 407 | Kynureninase [Amino acid transport and metabolism] | 99.96 | |
| cd06452 | 361 | SepCysS Sep-tRNA:Cys-tRNA synthase. This family be | 99.96 | |
| cd00613 | 398 | GDC-P Glycine cleavage system P-protein, alpha- an | 99.96 | |
| TIGR03799 | 522 | NOD_PanD_pyr putative pyridoxal-dependent aspartat | 99.96 | |
| PLN02880 | 490 | tyrosine decarboxylase | 99.95 | |
| TIGR02539 | 370 | SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation | 99.95 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.95 | |
| PLN02590 | 539 | probable tyrosine decarboxylase | 99.95 | |
| PRK00451 | 447 | glycine dehydrogenase subunit 1; Validated | 99.95 | |
| PRK05937 | 370 | 8-amino-7-oxononanoate synthase; Provisional | 99.95 | |
| COG0436 | 393 | Aspartate/tyrosine/aromatic aminotransferase [Amin | 99.95 | |
| PRK05957 | 389 | aspartate aminotransferase; Provisional | 99.94 | |
| PRK06207 | 405 | aspartate aminotransferase; Provisional | 99.94 | |
| PLN02263 | 470 | serine decarboxylase | 99.94 | |
| TIGR01822 | 393 | 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig | 99.94 | |
| PRK06108 | 382 | aspartate aminotransferase; Provisional | 99.94 | |
| TIGR01141 | 346 | hisC histidinol-phosphate aminotransferase. Histid | 99.94 | |
| PRK07179 | 407 | hypothetical protein; Provisional | 99.94 | |
| cd06454 | 349 | KBL_like KBL_like; this family belongs to the pyri | 99.94 | |
| cd00378 | 402 | SHMT Serine-glycine hydroxymethyltransferase (SHMT | 99.93 | |
| PRK03158 | 359 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK08056 | 356 | threonine-phosphate decarboxylase; Provisional | 99.93 | |
| PRK00950 | 361 | histidinol-phosphate aminotransferase; Validated | 99.93 | |
| TIGR01437 | 363 | selA_rel uncharacterized pyridoxal phosphate-depen | 99.93 | |
| cd00616 | 352 | AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa | 99.93 | |
| PRK06225 | 380 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK07681 | 399 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK04870 | 356 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| KOG2862 | 385 | consensus Alanine-glyoxylate aminotransferase AGT1 | 99.93 | |
| PRK08960 | 387 | hypothetical protein; Provisional | 99.93 | |
| PRK14807 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.93 | |
| PRK09105 | 370 | putative aminotransferase; Provisional | 99.93 | |
| PRK00011 | 416 | glyA serine hydroxymethyltransferase; Reviewed | 99.93 | |
| PLN02483 | 489 | serine palmitoyltransferase | 99.93 | |
| TIGR03540 | 383 | DapC_direct LL-diaminopimelate aminotransferase. T | 99.93 | |
| PRK08361 | 391 | aspartate aminotransferase; Provisional | 99.93 | |
| PRK13392 | 410 | 5-aminolevulinate synthase; Provisional | 99.93 | |
| PRK02731 | 367 | histidinol-phosphate aminotransferase; Validated | 99.92 | |
| PRK09276 | 385 | LL-diaminopimelate aminotransferase; Provisional | 99.92 | |
| PRK07324 | 373 | transaminase; Validated | 99.92 | |
| PRK07908 | 349 | hypothetical protein; Provisional | 99.92 | |
| PLN02414 | 993 | glycine dehydrogenase (decarboxylating) | 99.92 | |
| PRK05387 | 353 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| PRK05764 | 393 | aspartate aminotransferase; Provisional | 99.92 | |
| PRK06939 | 397 | 2-amino-3-ketobutyrate coenzyme A ligase; Provisio | 99.92 | |
| PRK01533 | 366 | histidinol-phosphate aminotransferase; Validated | 99.92 | |
| PRK05942 | 394 | aspartate aminotransferase; Provisional | 99.92 | |
| PLN03026 | 380 | histidinol-phosphate aminotransferase; Provisional | 99.92 | |
| TIGR00858 | 360 | bioF 8-amino-7-oxononanoate synthase. This model r | 99.92 | |
| PF00282 | 373 | Pyridoxal_deC: Pyridoxal-dependent decarboxylase c | 99.92 | |
| PLN00175 | 413 | aminotransferase family protein; Provisional | 99.92 | |
| PRK08363 | 398 | alanine aminotransferase; Validated | 99.92 | |
| PRK07682 | 378 | hypothetical protein; Validated | 99.92 | |
| COG0079 | 356 | HisC Histidinol-phosphate/aromatic aminotransferas | 99.92 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.92 | |
| TIGR01821 | 402 | 5aminolev_synth 5-aminolevulinic acid synthase. Th | 99.92 | |
| PLN00145 | 430 | tyrosine/nicotianamine aminotransferase; Provision | 99.92 | |
| PLN02721 | 353 | threonine aldolase | 99.92 | |
| PRK05958 | 385 | 8-amino-7-oxononanoate synthase; Reviewed | 99.92 | |
| TIGR03537 | 350 | DapC succinyldiaminopimelate transaminase. Note: t | 99.91 | |
| PRK08153 | 369 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PRK08912 | 387 | hypothetical protein; Provisional | 99.91 | |
| PLN02187 | 462 | rooty/superroot1 | 99.91 | |
| PRK06290 | 410 | aspartate aminotransferase; Provisional | 99.91 | |
| PRK13393 | 406 | 5-aminolevulinate synthase; Provisional | 99.91 | |
| PRK15481 | 431 | transcriptional regulatory protein PtsJ; Provision | 99.91 | |
| PRK11658 | 379 | UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin | 99.91 | |
| PRK09064 | 407 | 5-aminolevulinate synthase; Validated | 99.91 | |
| COG1168 | 388 | MalY Bifunctional PLP-dependent enzyme with beta-c | 99.91 | |
| PTZ00377 | 481 | alanine aminotransferase; Provisional | 99.91 | |
| PTZ00433 | 412 | tyrosine aminotransferase; Provisional | 99.91 | |
| PRK08068 | 389 | transaminase; Reviewed | 99.91 | |
| PRK07366 | 388 | succinyldiaminopimelate transaminase; Validated | 99.91 | |
| PRK13355 | 517 | bifunctional HTH-domain containing protein/aminotr | 99.91 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.91 | |
| TIGR01329 | 378 | cysta_beta_ly_E cystathionine beta-lyase, eukaryot | 99.91 | |
| PRK08064 | 390 | cystathionine beta-lyase; Provisional | 99.91 | |
| PRK12414 | 384 | putative aminotransferase; Provisional | 99.91 | |
| PRK06348 | 384 | aspartate aminotransferase; Provisional | 99.91 | |
| PRK07683 | 387 | aminotransferase A; Validated | 99.91 | |
| TIGR01825 | 385 | gly_Cac_T_rel pyridoxal phosphate-dependent acyltr | 99.91 | |
| PRK01688 | 351 | histidinol-phosphate aminotransferase; Provisional | 99.91 | |
| PLN03226 | 475 | serine hydroxymethyltransferase; Provisional | 99.91 | |
| PRK09265 | 404 | aminotransferase AlaT; Validated | 99.91 | |
| TIGR01265 | 403 | tyr_nico_aTase tyrosine/nicotianamine aminotransfe | 99.91 | |
| TIGR01264 | 401 | tyr_amTase_E tyrosine aminotransferase, eukaryotic | 99.91 | |
| cd00609 | 350 | AAT_like Aspartate aminotransferase family. This f | 99.91 | |
| PRK07337 | 388 | aminotransferase; Validated | 99.9 | |
| PRK04635 | 354 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK13580 | 493 | serine hydroxymethyltransferase; Provisional | 99.9 | |
| cd06502 | 338 | TA_like Low-specificity threonine aldolase (TA). T | 99.9 | |
| PRK07568 | 397 | aspartate aminotransferase; Provisional | 99.9 | |
| PRK05166 | 371 | histidinol-phosphate aminotransferase; Provisional | 99.9 | |
| PRK08134 | 433 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.9 | |
| COG0076 | 460 | GadB Glutamate decarboxylase and related PLP-depen | 99.9 | |
| PRK07777 | 387 | aminotransferase; Validated | 99.9 | |
| PRK07309 | 391 | aromatic amino acid aminotransferase; Validated | 99.9 | |
| PLN00143 | 409 | tyrosine/nicotianamine aminotransferase; Provision | 99.9 | |
| PRK07392 | 360 | threonine-phosphate decarboxylase; Validated | 99.9 | |
| TIGR03588 | 380 | PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin | 99.9 | |
| TIGR03538 | 393 | DapC_gpp succinyldiaminopimelate transaminase. Thi | 99.9 | |
| PRK06107 | 402 | aspartate aminotransferase; Provisional | 99.9 | |
| PLN02822 | 481 | serine palmitoyltransferase | 99.9 | |
| PRK03321 | 352 | putative aminotransferase; Provisional | 99.9 | |
| PRK06358 | 354 | threonine-phosphate decarboxylase; Provisional | 99.9 | |
| PRK06767 | 386 | methionine gamma-lyase; Provisional | 99.9 | |
| PRK07504 | 398 | O-succinylhomoserine sulfhydrylase; Reviewed | 99.9 | |
| PLN02376 | 496 | 1-aminocyclopropane-1-carboxylate synthase | 99.9 | |
| PRK09082 | 386 | methionine aminotransferase; Validated | 99.9 | |
| PRK13034 | 416 | serine hydroxymethyltransferase; Reviewed | 99.9 | |
| PRK09147 | 396 | succinyldiaminopimelate transaminase; Provisional | 99.89 | |
| PRK07550 | 386 | hypothetical protein; Provisional | 99.89 | |
| PRK08861 | 388 | cystathionine gamma-synthase; Provisional | 99.89 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.89 | |
| PRK09148 | 405 | aminotransferase; Validated | 99.89 | |
| PF00155 | 363 | Aminotran_1_2: Aminotransferase class I and II 1-a | 99.89 | |
| COG1167 | 459 | ARO8 Transcriptional regulators containing a DNA-b | 99.89 | |
| PRK06836 | 394 | aspartate aminotransferase; Provisional | 99.89 | |
| PRK08636 | 403 | aspartate aminotransferase; Provisional | 99.89 | |
| COG0156 | 388 | BioF 7-keto-8-aminopelargonate synthetase and rela | 99.89 | |
| COG0399 | 374 | WecE Predicted pyridoxal phosphate-dependent enzym | 99.89 | |
| PRK02610 | 374 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK05367 | 954 | glycine dehydrogenase; Provisional | 99.89 | |
| PLN02656 | 409 | tyrosine transaminase | 99.89 | |
| PLN02452 | 365 | phosphoserine transaminase | 99.89 | |
| PRK03317 | 368 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK04781 | 364 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| TIGR01140 | 330 | L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy | 99.89 | |
| PRK03967 | 337 | histidinol-phosphate aminotransferase; Provisional | 99.89 | |
| PRK05968 | 389 | hypothetical protein; Provisional | 99.89 | |
| PRK08776 | 405 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PRK08133 | 390 | O-succinylhomoserine sulfhydrylase; Validated | 99.88 | |
| PRK05839 | 374 | hypothetical protein; Provisional | 99.88 | |
| TIGR03542 | 402 | DAPAT_plant LL-diaminopimelate aminotransferase. T | 99.88 | |
| PLN02271 | 586 | serine hydroxymethyltransferase | 99.88 | |
| PRK08249 | 398 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PRK08045 | 386 | cystathionine gamma-synthase; Provisional | 99.88 | |
| KOG0257 | 420 | consensus Kynurenine aminotransferase, glutamine t | 99.88 | |
| PRK08175 | 395 | aminotransferase; Validated | 99.88 | |
| PLN02450 | 468 | 1-aminocyclopropane-1-carboxylate synthase | 99.88 | |
| PRK06425 | 332 | histidinol-phosphate aminotransferase; Validated | 99.88 | |
| PRK06460 | 376 | hypothetical protein; Provisional | 99.88 | |
| PLN03227 | 392 | serine palmitoyltransferase-like protein; Provisio | 99.88 | |
| cd00614 | 369 | CGS_like CGS_like: Cystathionine gamma-synthase is | 99.88 | |
| PRK07811 | 388 | cystathionine gamma-synthase; Provisional | 99.88 | |
| PLN02509 | 464 | cystathionine beta-lyase | 99.88 | |
| PRK14809 | 357 | histidinol-phosphate aminotransferase; Provisional | 99.88 | |
| PRK07812 | 436 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.88 | |
| TIGR02379 | 376 | ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | 99.87 | |
| TIGR01328 | 391 | met_gam_lyase methionine gamma-lyase. This model d | 99.87 | |
| PLN02607 | 447 | 1-aminocyclopropane-1-carboxylate synthase | 99.87 | |
| PRK06234 | 400 | methionine gamma-lyase; Provisional | 99.87 | |
| PRK07503 | 403 | methionine gamma-lyase; Provisional | 99.87 | |
| PRK08574 | 385 | cystathionine gamma-synthase; Provisional | 99.87 | |
| PRK05613 | 437 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.87 | |
| PRK06855 | 433 | aminotransferase; Validated | 99.87 | |
| TIGR02080 | 382 | O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. | 99.87 | |
| TIGR01325 | 380 | O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. | 99.87 | |
| PRK07671 | 377 | cystathionine beta-lyase; Provisional | 99.86 | |
| PRK08248 | 431 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PRK07590 | 409 | L,L-diaminopimelate aminotransferase; Validated | 99.86 | |
| cd00615 | 294 | Orn_deC_like Ornithine decarboxylase family. This | 99.86 | |
| PRK08114 | 395 | cystathionine beta-lyase; Provisional | 99.86 | |
| PLN02231 | 534 | alanine transaminase | 99.86 | |
| TIGR03576 | 346 | pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 | 99.86 | |
| PLN02955 | 476 | 8-amino-7-oxononanoate synthase | 99.86 | |
| TIGR01365 | 374 | serC_2 phosphoserine aminotransferase, Methanosarc | 99.86 | |
| PRK06176 | 380 | cystathionine gamma-synthase/cystathionine beta-ly | 99.86 | |
| TIGR03811 | 608 | tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu | 99.86 | |
| PRK14808 | 335 | histidinol-phosphate aminotransferase; Provisional | 99.86 | |
| PRK05994 | 427 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.86 | |
| PRK07505 | 402 | hypothetical protein; Provisional | 99.85 | |
| PRK09028 | 394 | cystathionine beta-lyase; Provisional | 99.85 | |
| PRK07865 | 364 | N-succinyldiaminopimelate aminotransferase; Review | 99.85 | |
| PRK11706 | 375 | TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio | 99.85 | |
| PRK06084 | 425 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.85 | |
| PF01041 | 363 | DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe | 99.85 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 99.85 | |
| PLN02242 | 418 | methionine gamma-lyase | 99.85 | |
| TIGR01324 | 377 | cysta_beta_ly_B cystathionine beta-lyase, bacteria | 99.85 | |
| PRK06959 | 339 | putative threonine-phosphate decarboxylase; Provis | 99.85 | |
| TIGR03539 | 357 | DapC_actino succinyldiaminopimelate transaminase. | 99.85 | |
| PRK07582 | 366 | cystathionine gamma-lyase; Validated | 99.85 | |
| PRK07810 | 403 | O-succinylhomoserine sulfhydrylase; Provisional | 99.85 | |
| PRK05939 | 397 | hypothetical protein; Provisional | 99.85 | |
| PRK13238 | 460 | tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d | 99.85 | |
| PRK04311 | 464 | selenocysteine synthase; Provisional | 99.85 | |
| PRK07269 | 364 | cystathionine gamma-synthase; Reviewed | 99.85 | |
| PRK08247 | 366 | cystathionine gamma-synthase; Reviewed | 99.85 | |
| TIGR00474 | 454 | selA seryl-tRNA(sec) selenium transferase. In bact | 99.84 | |
| PRK06702 | 432 | O-acetylhomoserine aminocarboxypropyltransferase; | 99.84 | |
| PRK05664 | 330 | threonine-phosphate decarboxylase; Reviewed | 99.84 | |
| PRK12462 | 364 | phosphoserine aminotransferase; Provisional | 99.84 | |
| PRK15407 | 438 | lipopolysaccharide biosynthesis protein RfbH; Prov | 99.84 | |
| PRK00854 | 401 | rocD ornithine--oxo-acid transaminase; Reviewed | 99.83 | |
| cd00610 | 413 | OAT_like Acetyl ornithine aminotransferase family. | 99.83 | |
| PRK03244 | 398 | argD acetylornithine aminotransferase; Provisional | 99.83 | |
| PRK08354 | 311 | putative aminotransferase; Provisional | 99.83 | |
| TIGR01326 | 418 | OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d | 99.82 | |
| PRK07050 | 394 | cystathionine beta-lyase; Provisional | 99.82 | |
| PRK10534 | 333 | L-threonine aldolase; Provisional | 99.82 | |
| KOG0259 | 447 | consensus Tyrosine aminotransferase [Amino acid tr | 99.82 | |
| TIGR03801 | 521 | asp_4_decarbox aspartate 4-decarboxylase. This enz | 99.81 | |
| PRK07049 | 427 | methionine gamma-lyase; Validated | 99.81 | |
| KOG1368 | 384 | consensus Threonine aldolase [Amino acid transport | 99.81 | |
| PRK04073 | 396 | rocD ornithine--oxo-acid transaminase; Provisional | 99.81 | |
| PRK09275 | 527 | aspartate aminotransferase; Provisional | 99.81 | |
| PRK05967 | 395 | cystathionine beta-lyase; Provisional | 99.81 | |
| KOG0629 | 510 | consensus Glutamate decarboxylase and related prot | 99.8 | |
| COG0112 | 413 | GlyA Glycine/serine hydroxymethyltransferase [Amin | 99.8 | |
| cd00617 | 431 | Tnase_like Tryptophanase family (Tnase). This fami | 99.8 | |
| PRK09440 | 416 | avtA valine--pyruvate transaminase; Provisional | 99.8 | |
| PTZ00125 | 400 | ornithine aminotransferase-like protein; Provision | 99.8 | |
| PRK06434 | 384 | cystathionine gamma-lyase; Validated | 99.8 | |
| PRK01278 | 389 | argD acetylornithine transaminase protein; Provisi | 99.8 | |
| PTZ00376 | 404 | aspartate aminotransferase; Provisional | 99.8 | |
| KOG3846 | 465 | consensus L-kynurenine hydrolase [Amino acid trans | 99.79 | |
| COG2873 | 426 | MET17 O-acetylhomoserine sulfhydrylase [Amino acid | 99.79 | |
| cd01494 | 170 | AAT_I Aspartate aminotransferase (AAT) superfamily | 99.79 | |
| COG1003 | 496 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.79 | |
| PF01053 | 386 | Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent | 99.79 | |
| COG2008 | 342 | GLY1 Threonine aldolase [Amino acid transport and | 99.79 | |
| TIGR00707 | 379 | argD acetylornithine and succinylornithine aminotr | 99.78 | |
| KOG1359 | 417 | consensus Glycine C-acetyltransferase/2-amino-3-ke | 99.78 | |
| PRK09257 | 396 | aromatic amino acid aminotransferase; Provisional | 99.78 | |
| KOG1360 | 570 | consensus 5-aminolevulinate synthase [Coenzyme tra | 99.78 | |
| TIGR03531 | 444 | selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr | 99.78 | |
| COG1103 | 382 | Archaea-specific pyridoxal phosphate-dependent enz | 99.77 | |
| PRK02627 | 396 | acetylornithine aminotransferase; Provisional | 99.76 | |
| PRK02936 | 377 | argD acetylornithine aminotransferase; Provisional | 99.76 | |
| PRK08637 | 388 | hypothetical protein; Provisional | 99.75 | |
| PLN02397 | 423 | aspartate transaminase | 99.75 | |
| PRK04260 | 375 | acetylornithine aminotransferase; Provisional | 99.75 | |
| PLN02368 | 407 | alanine transaminase | 99.74 | |
| COG4992 | 404 | ArgD Ornithine/acetylornithine aminotransferase [A | 99.74 | |
| PF00464 | 399 | SHMT: Serine hydroxymethyltransferase; InterPro: I | 99.73 | |
| TIGR03246 | 397 | arg_catab_astC succinylornithine transaminase fami | 99.73 | |
| COG0626 | 396 | MetC Cystathionine beta-lyases/cystathionine gamma | 99.72 | |
| PF01276 | 417 | OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; | 99.72 | |
| TIGR01885 | 401 | Orn_aminotrans ornithine aminotransferase. This mo | 99.71 | |
| KOG1357 | 519 | consensus Serine palmitoyltransferase [Posttransla | 99.71 | |
| PLN02624 | 474 | ornithine-delta-aminotransferase | 99.7 | |
| PRK05093 | 403 | argD bifunctional N-succinyldiaminopimelate-aminot | 99.7 | |
| PRK15029 | 755 | arginine decarboxylase; Provisional | 99.69 | |
| KOG0256 | 471 | consensus 1-aminocyclopropane-1-carboxylate syntha | 99.69 | |
| KOG0634 | 472 | consensus Aromatic amino acid aminotransferase and | 99.69 | |
| TIGR00461 | 939 | gcvP glycine dehydrogenase (decarboxylating). This | 99.68 | |
| COG1932 | 365 | SerC Phosphoserine aminotransferase [Coenzyme meta | 99.67 | |
| PRK12381 | 406 | bifunctional succinylornithine transaminase/acetyl | 99.67 | |
| PRK03715 | 395 | argD acetylornithine transaminase protein; Provisi | 99.66 | |
| PRK05964 | 423 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.66 | |
| KOG0053 | 409 | consensus Cystathionine beta-lyases/cystathionine | 99.66 | |
| PLN00144 | 382 | acetylornithine transaminase | 99.66 | |
| KOG1383 | 491 | consensus Glutamate decarboxylase/sphingosine phos | 99.63 | |
| PRK13578 | 720 | ornithine decarboxylase; Provisional | 99.63 | |
| TIGR02407 | 412 | ectoine_ectB diaminobutyrate--2-oxoglutarate amino | 99.63 | |
| PRK15400 | 714 | lysine decarboxylase CadA; Provisional | 99.63 | |
| PRK15399 | 713 | lysine decarboxylase LdcC; Provisional | 99.63 | |
| KOG0628 | 511 | consensus Aromatic-L-amino-acid/L-histidine decarb | 99.63 | |
| PRK08117 | 433 | 4-aminobutyrate aminotransferase; Provisional | 99.62 | |
| TIGR02618 | 450 | tyr_phenol_ly tyrosine phenol-lyase. This model de | 99.61 | |
| PRK11522 | 459 | putrescine--2-oxoglutarate aminotransferase; Provi | 99.61 | |
| TIGR03372 | 442 | putres_am_tran putrescine aminotransferase. Member | 99.61 | |
| PRK13237 | 460 | tyrosine phenol-lyase; Provisional | 99.61 | |
| TIGR00700 | 420 | GABAtrnsam 4-aminobutyrate aminotransferase, proka | 99.6 | |
| PRK06541 | 460 | hypothetical protein; Provisional | 99.6 | |
| PRK08360 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.59 | |
| PRK04612 | 408 | argD acetylornithine transaminase protein; Provisi | 99.59 | |
| PRK08088 | 425 | 4-aminobutyrate aminotransferase; Validated | 99.58 | |
| PRK09792 | 421 | 4-aminobutyrate transaminase; Provisional | 99.58 | |
| PRK07495 | 425 | 4-aminobutyrate aminotransferase; Provisional | 99.58 | |
| KOG0633 | 375 | consensus Histidinol phosphate aminotransferase [A | 99.58 | |
| PRK06058 | 443 | 4-aminobutyrate aminotransferase; Provisional | 99.57 | |
| PRK06777 | 421 | 4-aminobutyrate aminotransferase; Provisional | 99.57 | |
| PLN02760 | 504 | 4-aminobutyrate:pyruvate transaminase | 99.57 | |
| COG0160 | 447 | GabT 4-aminobutyrate aminotransferase and related | 99.56 | |
| TIGR00713 | 423 | hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi | 99.55 | |
| PRK09221 | 445 | beta alanine--pyruvate transaminase; Provisional | 99.54 | |
| COG3977 | 417 | Alanine-alpha-ketoisovalerate (or valine-pyruvate) | 99.54 | |
| PRK08593 | 445 | 4-aminobutyrate aminotransferase; Provisional | 99.54 | |
| PRK05769 | 441 | 4-aminobutyrate aminotransferase; Provisional | 99.54 | |
| PRK09264 | 425 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.53 | |
| PRK06173 | 429 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.51 | |
| PRK12403 | 460 | putative aminotransferase; Provisional | 99.51 | |
| PRK07678 | 451 | aminotransferase; Validated | 99.51 | |
| PRK06918 | 451 | 4-aminobutyrate aminotransferase; Reviewed | 99.5 | |
| PRK06062 | 451 | hypothetical protein; Provisional | 99.5 | |
| PRK13360 | 442 | omega amino acid--pyruvate transaminase; Provision | 99.5 | |
| PF02347 | 429 | GDC-P: Glycine cleavage system P-protein; InterPro | 99.5 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 99.49 | |
| KOG1402 | 427 | consensus Ornithine aminotransferase [Amino acid t | 99.48 | |
| PF12897 | 425 | Aminotran_MocR: Alanine-glyoxylate amino-transfera | 99.48 | |
| PRK07482 | 461 | hypothetical protein; Provisional | 99.47 | |
| PRK04013 | 364 | argD acetylornithine/acetyl-lysine aminotransferas | 99.46 | |
| PRK06105 | 460 | aminotransferase; Provisional | 99.45 | |
| PRK06943 | 453 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| PRK07036 | 466 | hypothetical protein; Provisional | 99.45 | |
| PRK05965 | 459 | hypothetical protein; Provisional | 99.45 | |
| PRK05630 | 422 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| PRK07986 | 428 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.45 | |
| PF01212 | 290 | Beta_elim_lyase: Beta-eliminating lyase; InterPro: | 99.44 | |
| PRK12389 | 428 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.44 | |
| PRK06916 | 460 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.44 | |
| PRK05639 | 457 | 4-aminobutyrate aminotransferase; Provisional | 99.44 | |
| TIGR00508 | 427 | bioA adenosylmethionine-8-amino-7-oxononanoate tra | 99.44 | |
| PRK06149 | 972 | hypothetical protein; Provisional | 99.44 | |
| TIGR00709 | 442 | dat 2,4-diaminobutyrate 4-transaminases. This fami | 99.44 | |
| PRK06082 | 459 | 4-aminobutyrate aminotransferase; Provisional | 99.44 | |
| PRK07030 | 466 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.43 | |
| KOG2467 | 477 | consensus Glycine/serine hydroxymethyltransferase | 99.43 | |
| PLN02482 | 474 | glutamate-1-semialdehyde 2,1-aminomutase | 99.43 | |
| PRK07481 | 449 | hypothetical protein; Provisional | 99.42 | |
| PRK00615 | 433 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.42 | |
| COG1982 | 557 | LdcC Arginine/lysine/ornithine decarboxylases [Ami | 99.42 | |
| PRK08742 | 472 | adenosylmethionine--8-amino-7-oxononanoate transam | 99.42 | |
| COG0001 | 432 | HemL Glutamate-1-semialdehyde aminotransferase [Co | 99.42 | |
| PRK00062 | 426 | glutamate-1-semialdehyde aminotransferase; Provisi | 99.41 | |
| PRK07480 | 456 | putative aminotransferase; Validated | 99.41 | |
| PRK07483 | 443 | hypothetical protein; Provisional | 99.4 | |
| COG0403 | 450 | GcvP Glycine cleavage system protein P (pyridoxal- | 99.39 | |
| PRK06938 | 464 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.39 | |
| COG0161 | 449 | BioA Adenosylmethionine-8-amino-7-oxononanoate ami | 99.38 | |
| PRK06917 | 447 | hypothetical protein; Provisional | 99.37 | |
| PRK07046 | 453 | aminotransferase; Validated | 99.37 | |
| PRK06931 | 459 | diaminobutyrate--2-oxoglutarate aminotransferase; | 99.36 | |
| TIGR00699 | 464 | GABAtrns_euk 4-aminobutyrate aminotransferase, euk | 99.35 | |
| PRK06148 | 1013 | hypothetical protein; Provisional | 99.33 | |
| TIGR03251 | 431 | LAT_fam L-lysine 6-transaminase. Characterized mem | 99.32 | |
| COG1921 | 395 | SelA Selenocysteine synthase [seryl-tRNASer seleni | 99.3 | |
| KOG0258 | 475 | consensus Alanine aminotransferase [Amino acid tra | 99.28 | |
| PRK08297 | 443 | L-lysine aminotransferase; Provisional | 99.26 | |
| PRK06209 | 431 | glutamate-1-semialdehyde 2,1-aminomutase; Provisio | 99.25 | |
| COG1448 | 396 | TyrB Aspartate/tyrosine/aromatic aminotransferase | 99.24 | |
| KOG2790 | 370 | consensus Phosphoserine aminotransferase [Coenzyme | 99.21 | |
| TIGR02617 | 467 | tnaA_trp_ase tryptophanase, leader peptide-associa | 99.18 | |
| KOG1404 | 442 | consensus Alanine-glyoxylate aminotransferase AGT2 | 99.18 | |
| PRK12566 | 954 | glycine dehydrogenase; Provisional | 99.18 | |
| PF06838 | 403 | Met_gamma_lyase: Methionine gamma-lyase ; InterPro | 99.18 | |
| PF03841 | 367 | SelA: L-seryl-tRNA selenium transferase; InterPro: | 99.18 | |
| PLN02974 | 817 | adenosylmethionine-8-amino-7-oxononanoate transami | 99.14 | |
| KOG1358 | 467 | consensus Serine palmitoyltransferase [Posttransla | 99.1 | |
| KOG1401 | 433 | consensus Acetylornithine aminotransferase [Amino | 99.09 | |
| PF05889 | 389 | SLA_LP_auto_ag: Soluble liver antigen/liver pancre | 99.02 | |
| PF00202 | 339 | Aminotran_3: Aminotransferase class-III; InterPro: | 98.92 | |
| COG3033 | 471 | TnaA Tryptophanase [Amino acid transport and metab | 98.53 | |
| PF04864 | 363 | Alliinase_C: Allinase; InterPro: IPR006948 Allicin | 98.4 | |
| KOG2142 | 728 | consensus Molybdenum cofactor sulfurase [Coenzyme | 98.36 | |
| COG4100 | 416 | Cystathionine beta-lyase family protein involved i | 98.32 | |
| KOG1412 | 410 | consensus Aspartate aminotransferase/Glutamic oxal | 97.73 | |
| KOG2040 | 1001 | consensus Glycine dehydrogenase (decarboxylating) | 97.68 | |
| KOG1403 | 452 | consensus Predicted alanine-glyoxylate aminotransf | 97.44 | |
| KOG1405 | 484 | consensus 4-aminobutyrate aminotransferase [Amino | 97.13 | |
| KOG1411 | 427 | consensus Aspartate aminotransferase/Glutamic oxal | 96.69 | |
| PLN02994 | 153 | 1-aminocyclopropane-1-carboxylate synthase | 94.81 | |
| KOG0630 | 838 | consensus Predicted pyridoxal-dependent decarboxyl | 94.6 | |
| KOG3843 | 432 | consensus Predicted serine hydroxymethyltransferas | 94.08 |
| >COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-60 Score=503.11 Aligned_cols=395 Identities=31% Similarity=0.473 Sum_probs=355.2
Q ss_pred HHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC
Q 038499 56 TWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG 135 (609)
Q Consensus 56 ~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g 135 (609)
+.+|++||.....+ .++++|||++++++.|..|++++.+++..+++|.|.+.+..+...++.++++|+.+|+++|
T Consensus 6 ~~~r~~fp~l~~~~-----~~~~vylD~aa~~~~p~~V~~a~~~~~~~~~an~~r~~~~~~~~~t~~~e~aRe~va~~~~ 80 (405)
T COG0520 6 AAVRADFPALKREV-----GKPLVYLDNAATSQKPQAVLDAVAEYYRRYNANVHRGAHTLAEEATDLYEAAREAVARFLN 80 (405)
T ss_pred HHHHhhCHHHhhcc-----CCCeEEecCcccccCCHHHHHHHHHHHHhhcCCcCcccchHHHHHHHHHHHHHHHHHHHhC
Confidence 56888898665333 3468999999999999999999999999999999998888888999999999999999999
Q ss_pred CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH----cCceEEEEecC
Q 038499 136 GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ----SLAEVVEIGLD 211 (609)
Q Consensus 136 ~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~ 211 (609)
+++.++|+|| .|||.+|+.++..++.. +++|| +|++++.|||+|..+|++ .|++++++|++
T Consensus 81 a~~~~eIvft-~~tT~aln~va~~l~~~------------~~~gd--eIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i~~~ 145 (405)
T COG0520 81 ADSSDEIVFT-RGTTEALNLVARGLGRS------------LKPGD--EIVVSDLEHHSNIVPWQELAKRTGAKVRVIPLD 145 (405)
T ss_pred CCCCCeEEEe-CChhHHHHHHHHHhhhh------------hcCCC--EEEEccCcchhhHHHHHHHHHhcCcEEEEEecC
Confidence 9974489999 89999999999987521 47888 799999999999999975 48999999999
Q ss_pred CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccE
Q 038499 212 DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDA 291 (609)
Q Consensus 212 ~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~ 291 (609)
++|.+++++++..++ ++||+|++++++|.||.+.|+++|+++||++|++++||++|++|+.++|+..+ ++|+
T Consensus 146 ~~g~~~~~~~~~~i~-----~~Tklvais~vSn~tG~~~pv~~I~~la~~~ga~v~VDaaq~~~h~~idv~~l---~~Df 217 (405)
T COG0520 146 DDGLLDLDALEKLIT-----PKTKLVALSHVSNVTGTVNPVKEIAELAHEHGALVLVDAAQAAGHLPIDVQEL---GCDF 217 (405)
T ss_pred CCCCcCHHHHHHhcC-----CCceEEEEECccccccccchHHHHHHHHHHcCCEEEEECccccCccCCCchhc---CCCE
Confidence 999999999999888 79999999999999999999999999999999999999999999999999987 9999
Q ss_pred EEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHH
Q 038499 292 IFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWV 371 (609)
Q Consensus 292 v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~ 371 (609)
+++|+|||++||.|+|+|++++++ ++.+.|...||+++.+++. .....+...+.+++.|||++.+.++.+.++..
T Consensus 218 ~afsgHKwl~gP~GiGvLy~r~~~--l~~l~P~~~gg~~~~~~~~---~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~ 292 (405)
T COG0520 218 LAFSGHKWLLGPTGIGVLYVRKEL--LEELEPFLGGGGMIEYVSR---DEGVTLAELPLRFEAGTPNIAGAIGLAAALDY 292 (405)
T ss_pred EEEcccccccCCCceEEEEEchHH--HhhcCCcccCCCceeeecc---cccccccCcchhhccCCchHHHHHhHHHHHHH
Confidence 999999999999999999999999 7889999999999888753 23456667789999999999999876555555
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 038499 372 KEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLND 451 (609)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 451 (609)
.+.+|++.|.++++++.+++.+.|+++|+++++++.+..+.++++|.+.. +++.++++.|.+
T Consensus 293 ~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~v~~------------------~~~~dv~~~L~~ 354 (405)
T COG0520 293 LLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFNVKG------------------IHPHDVATLLDE 354 (405)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEEeCC------------------CCHHHHHHHHHh
Confidence 58899999999999999999999999999999998655799999999987 689999999976
Q ss_pred hcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 452 LFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 452 ~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
+ ||.+|.|++|+.|+ +..+++. +.+|+|+++|||+||||+++++|+++.+
T Consensus 355 ~-gI~vr~g~~ca~p~-~~~~~~~--------------------~~iR~S~~~YNt~edid~l~~aL~~~~~ 404 (405)
T COG0520 355 K-GIAVRAGHHCAQPL-HRLLGVD--------------------ATIRASLHLYNTEEDVDRLLEALKKALA 404 (405)
T ss_pred C-CeEEEeccccccHH-HHhcCCC--------------------CceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence 4 89999999999887 6666654 6699999999999999999999998865
|
|
| >COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=419.38 Aligned_cols=378 Identities=24% Similarity=0.298 Sum_probs=326.4
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
++||||++++|..+.|.+++...+...|+||++ .|..|+...+..+++|+.||+++|+++. +|+|| ||.|++.|.++
T Consensus 2 miYlD~~ATTp~~~~v~~~m~~~~~~~fgNPsS-~H~~G~~A~~~ve~AR~~iA~llga~~~-eIiFT-SG~TEsnNlaI 78 (386)
T COG1104 2 MIYLDNAATTPVDPEVLEAMLPYLTEVFGNPSS-LHSFGREARKAVEEAREQIAKLLGADPE-EIIFT-SGATESNNLAI 78 (386)
T ss_pred cccccccccCCCCHHHHHHHHHHHHhhcCCccc-hhHhHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-cCCcHHHHHHH
Confidence 589999999999999999999999999999999 4678999999999999999999999996 99999 67777777666
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc---CceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS---LAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~---G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
...-..... -+.+. +|+++..||+++..+++.. |.+|.+++++.+|.+|+++|+++|+ ++|
T Consensus 79 ~g~~~a~~~---------~~~~~--HIIts~iEH~aVl~~~~~Le~~g~~Vtyl~V~~~G~v~~e~L~~al~-----~~T 142 (386)
T COG1104 79 KGAALAYRN---------AQKGK--HIITSAIEHPAVLNTCRYLERQGFEVTYLPVDSNGLVDLEQLEEALR-----PDT 142 (386)
T ss_pred HhhHHhhhc---------ccCCC--eEEEcccccHHHHHHHHHHHhcCCeEEEeCCCCCCeEcHHHHHHhcC-----CCc
Confidence 542111100 01233 8999999999999988776 9999999999999999999999999 789
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
.+|++.++||.||++.|+++|+++|+++|+++|+|++|++|.+++|+..+ ++|++++|.||+.| |.|+|+||+++.
T Consensus 143 ~LVSim~aNnE~G~IQpI~ei~~i~k~~~i~fHvDAvQa~Gkipi~~~~~---~vD~ls~SaHK~~G-pkGiGaLyv~~~ 218 (386)
T COG1104 143 ILVSIMHANNETGTIQPIAEIGEICKERGILFHVDAVQAVGKIPIDLEEL---GVDLLSFSAHKFGG-PKGIGALYVRPG 218 (386)
T ss_pred eEEEEEecccCeeecccHHHHHHHHHHcCCeEEEehhhhcCceecccccc---CcceEEeehhhccC-CCceEEEEECCC
Confidence 99999999999999999999999999999999999999999999999986 79999999999965 999999999887
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
. .+.|...|||+ +...++||.|+.+++..+.++.+. ...++...++...+++++.+.
T Consensus 219 ~----~~~p~i~GGgQ------------------E~g~RsGTenv~~Ivg~~~A~~~a-~~~~~~~~~~~~~lr~~l~~~ 275 (386)
T COG1104 219 V----RLEPLIHGGGQ------------------ERGLRSGTENVPGIVGFGKAAEIA-VEELEEENARLRKLRDRLEDG 275 (386)
T ss_pred C----ccCceeccCcC------------------CCCCCCCCccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 7 67899999999 888999999988877555444332 234566778889999999999
Q ss_pred hCCC-CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh---hhhh
Q 038499 395 LLPN-QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP---YGHH 470 (609)
Q Consensus 395 L~~~-p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p---~~~~ 470 (609)
|.+. |.+.+.+.. .+|+|++.....+ + +.++.+.-.| ++.||.+..|++|+.+ .+|.
T Consensus 276 l~~~~p~~~~~g~~-~~rlP~~~~~~f~-g----------------v~gE~ll~~L-~~~gI~vStGSACsS~~~~pShV 336 (386)
T COG1104 276 LLEIIPDVYLNGDD-EPRLPNILNFSFP-G----------------VEGESLLLAL-DLAGIAVSTGSACSSGSLEPSHV 336 (386)
T ss_pred HHhcCCcEEEcCCc-ccCCCCeEEEEeC-C----------------CcHHHHHHhc-cccCeEEeccccccCCCCCccHH
Confidence 9865 899888874 5799988777776 3 5677887777 6679999999999975 7889
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccCCCc
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYN 533 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~p~y~ 533 (609)
|..|+.+...+ .+.|||||+.++|++|+++++++++++++++++..|+|.
T Consensus 337 L~AmG~~~e~a-------------~~siR~S~g~~tt~eei~~~~~~l~~~i~~lr~~~~~~~ 386 (386)
T COG1104 337 LRAMGISEELA-------------HGSIRFSLGRFTTEEEIDAAAEALKEIIKRLRELSPLWA 386 (386)
T ss_pred HHHcCCChHHh-------------CccEEEEcCCCCCHHHHHHHHHHHHHHHHHHhhhccccC
Confidence 98887655443 699999999999999999999999999999999988873
|
|
| >PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-47 Score=406.52 Aligned_cols=395 Identities=24% Similarity=0.330 Sum_probs=319.3
Q ss_pred HHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 038499 55 LTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL 134 (609)
Q Consensus 55 ~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~ 134 (609)
++.+|++||..+. .+.+ .++||||+++++|.|+.|.+++.+.+...++|++.+.+..+....+.++++|+.+++++
T Consensus 5 ~~~~r~~fp~~~~---~~~~-~~~iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 80 (406)
T PRK09295 5 VEKVRADFPVLSR---EVNG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKQAALFI 80 (406)
T ss_pred hHHHHhhCccccC---cCCC-CceEEEeCcccccCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHc
Confidence 3678999986541 1222 35799999999999999999999999877888876656667778899999999999999
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH----HcCceEEEEec
Q 038499 135 GGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----QSLAEVVEIGL 210 (609)
Q Consensus 135 g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~ 210 (609)
|+.+.++|+|| +|+|++++.++..+... .+++|| .|+++..+|+++..+|. ..|++++.++.
T Consensus 81 ~~~~~~~v~~t-~g~t~~l~~~~~~~~~~-----------~~~~gd--~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~ 146 (406)
T PRK09295 81 NARSAEELVFV-RGTTEGINLVANSWGNS-----------NVRAGD--NIIISEMEHHANIVPWQMLCARVGAELRVIPL 146 (406)
T ss_pred CcCCCCeEEEe-CCHHHHHHHHHHHhhhh-----------cCCCcC--EEEECcchhhHHHHHHHHHHHHcCcEEEEEec
Confidence 98433489998 78888999888765210 147888 79999999999877764 46999999999
Q ss_pred CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCcc
Q 038499 211 DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYD 290 (609)
Q Consensus 211 ~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D 290 (609)
++++.+|+++|+++++ ++++++++++++|+||.+.|+++|+++||++|+++++|++|+.++.++++..+ ++|
T Consensus 147 ~~~~~~d~~~l~~~i~-----~~t~lv~l~~~~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~---~~D 218 (406)
T PRK09295 147 NPDGTLQLETLPALFD-----ERTRLLAITHVSNVLGTENPLAEMIALAHQHGAKVLVDGAQAVMHHPVDVQAL---DCD 218 (406)
T ss_pred CCCCCCCHHHHHHhcC-----CCcEEEEEecchhcccccCCHHHHHHHHHHcCCEEEEEcccccCccccCchhc---CCC
Confidence 8888899999999997 68999999999999999999999999999999999999999999999998765 889
Q ss_pred EEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHH
Q 038499 291 AIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFW 370 (609)
Q Consensus 291 ~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~ 370 (609)
++++|+||++| |.|+|++++++++ ++.++|...||+.....+. .....+.....|++.||+++.+++.+..++.
T Consensus 219 ~~~~s~~K~~g-p~G~G~l~~~~~~--~~~~~~~~~g~~~~~~~~~---~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~ 292 (406)
T PRK09295 219 FYVFSGHKLYG-PTGIGILYVKEAL--LQEMPPWEGGGSMIATVSL---TEGTTWAKAPWRFEAGTPNTGGIIGLGAALD 292 (406)
T ss_pred EEEeehhhccC-CCCcEEEEEchHh--HhhCCCcccCCceeeeeec---CCccccCCchhhcCCCCccHHHHHHHHHHHH
Confidence 99999999655 8899999999998 5667665555444333221 1111123345788999999988775554544
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHh
Q 038499 371 VKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLN 450 (609)
Q Consensus 371 ~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 450 (609)
.....|.+.+.++.+++++++.+.|+++++++++++. .+.++++|.+.. .+..++.+.|
T Consensus 293 ~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~--~~~~iv~~~~~~------------------~~~~~~~~~L- 351 (406)
T PRK09295 293 YVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--NRLGVIAFNLGK------------------HHAYDVGSFL- 351 (406)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC--CCceEEEEEECC------------------cCHHHHHHHH-
Confidence 4467799999999999999999999999999999873 467899998764 3567888888
Q ss_pred hhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 451 DLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 451 ~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
+.+||.++.|++|+.+.... .+ .++++|+|+++|||++|+|+++++|+++.+
T Consensus 352 ~~~gI~v~~g~~c~~~~~~~-~~--------------------~~~~iRiS~~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 352 DNYGIAVRTGHHCAMPLMAY-YN--------------------VPAMCRASLAMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred HhCCeEEeccccchHHHHHH-HC--------------------CCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence 56799999999998553221 11 257999999999999999999999999865
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=434.42 Aligned_cols=422 Identities=20% Similarity=0.222 Sum_probs=325.4
Q ss_pred HHHHHHH-hhccCCCccccCCCCCCceEEecCCCCCCCh-HHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHH
Q 038499 53 KKLTWLQ-SQIIGKNAEFDSPFGKRRLTYADHTASGRSL-RYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYI 130 (609)
Q Consensus 53 ~~~~~~r-~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~-~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~i 130 (609)
..++.+| .+||... ..+||||+++++.+ ..|++++.+.+...++|+|+. +..+..+.+.++++|+.+
T Consensus 19 ~~~~~~R~~~fp~l~----------~~iYLD~Aatt~~~~~~V~~~~~~~~~~~~~np~s~-~~~s~~~~~~~e~aR~~i 87 (805)
T PLN02724 19 KPIDELRATEFARLK----------GVVYLDHAGATLYSESQLEAALADFSSNVYGNPHSQ-SDSSMRSSDTIESARQQV 87 (805)
T ss_pred hhHHHHHHHHhhhcC----------CCEeEeCCCCCCCCHHHHHHHHHHHHhhccCCCCcC-cchhhhHHHHHHHHHHHH
Confidence 4578899 5888664 47999999999865 567777767777788999964 556777889999999999
Q ss_pred HHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH---HcCceEE
Q 038499 131 KKCLGGGQED-AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR---QSLAEVV 206 (609)
Q Consensus 131 a~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~---~~G~~vv 206 (609)
++++|+++++ +|+|| +|+|++++.++..+. +++|| +|+++..+|+++...|+ ..|++++
T Consensus 88 a~~lga~~~~~~VvFt-snaT~alnlva~~l~--------------~~~gd--~Iv~t~~eH~svl~~~~~a~~~G~~v~ 150 (805)
T PLN02724 88 LEYFNAPPSDYACVFT-SGATAALKLVGETFP--------------WSSES--HFCYTLENHNSVLGIREYALEKGAAAI 150 (805)
T ss_pred HHHhCCCccceEEEEe-CChHHHHHHHHHHCC--------------CCCCC--eEEEeeccccchHHHHHHHHHcCCeEE
Confidence 9999998765 68999 789999999988764 57888 68889999988875443 2499999
Q ss_pred EEecC--------CCCCCCH--HHHHHHHhh-----hccCCCceEEEEecccCccccccCHHHHHHHHHHh--------C
Q 038499 207 EIGLD--------DDGLLDI--EALRSKLEL-----YKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY--------G 263 (609)
Q Consensus 207 ~v~~~--------~~g~ld~--e~L~~al~~-----~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~--------g 263 (609)
.++++ ..+.+++ ++|++.++. ....++++++++++++|.||.+.|++.|..+++.. +
T Consensus 151 ~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~ 230 (805)
T PLN02724 151 AVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFPLDLVKLIKDNQHSNFSKSGR 230 (805)
T ss_pred eccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCCHHHHHHHHHhcccccccCcc
Confidence 99876 3444544 667765420 00124678999999999999999999775554432 3
Q ss_pred CeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 264 GFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 264 ~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+++++|+||++|+.++|+.++ ++|++++|+|||+|||.|+|+|++++++ +..+.|...|||++.+.... .....
T Consensus 231 ~~v~vDaaQ~~g~~piDv~~~---~~Dfl~~S~HK~~GgP~G~G~L~vr~~~--~~~l~p~~~GGg~~~~~~~~-~~~~~ 304 (805)
T PLN02724 231 WMVLLDAAKGCGTSPPDLSRY---PADFVVVSFYKIFGYPTGLGALLVRRDA--AKLLKKKYFGGGTVAASIAD-IDFVK 304 (805)
T ss_pred eEEEeehhhhcCCCCCChhhc---CCCEEEEecceeccCCCCceEEEEehhh--hhhhcCCccCCCceEEEecc-cceee
Confidence 579999999999999999987 8999999999999999999999999998 56788889998886543210 01111
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC------ceEEeCCCC-----CCCc
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ------NIKILGNTS-----TKRQ 412 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p------~i~v~~~~~-----~~r~ 412 (609)
.....+.|++.||+++.+++.++.++...+.+|++.|.+++++|.+++.+.|++++ +++++++.. ..+.
T Consensus 305 ~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~~~~~~~r~ 384 (805)
T PLN02724 305 RRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTFKLEFHIQG 384 (805)
T ss_pred ccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCCCCCccccc
Confidence 23345789999999998877555444444778999999999999999999999886 699998641 3589
Q ss_pred ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCC-
Q 038499 413 AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYV- 491 (609)
Q Consensus 413 ~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~- 491 (609)
|+++|.+.. . .+..++..++..++ +.+||++|.||+|++++...++|+... .+++.+.+|..
T Consensus 385 ~ivsFnv~~-~------------~~~~v~~~~v~~l~-~~~gI~vR~G~~Ca~~~~~~~lg~~~~---~l~~~~~~~~~c 447 (805)
T PLN02724 385 PIVTFNLKR-A------------DGSWVGHREVEKLA-SLSGIQLRTGCFCNPGACAKYLGLSHK---DLQANFEAGHVC 447 (805)
T ss_pred CEEEEEEEc-C------------CCCEeCHHHHHHHH-HhcCcEEeeccccCchHHHHHcCCCHH---HHHHHhhcCCcc
Confidence 999999986 2 23346677777665 668999999999997766666776543 22333334432
Q ss_pred --------CCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 492 --------GVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 492 --------~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+...|+||+||++|+|.+||++++++|++..-..
T Consensus 448 ~~~~~~~~~~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~~~ 489 (805)
T PLN02724 448 WDDQDVIHGRPTGAVRVSFGYMSTFEDCQKFIDFIISSFVST 489 (805)
T ss_pred CchhheecCcccceEEEEcCccCCHHHHHHHHHHHHHHhhcC
Confidence 2234999999999999999999999999966443
|
|
| >PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-46 Score=401.96 Aligned_cols=399 Identities=25% Similarity=0.344 Sum_probs=322.0
Q ss_pred HHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC
Q 038499 56 TWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG 135 (609)
Q Consensus 56 ~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g 135 (609)
+.+|++||..+ ..+.| ++.+|||+++.++.|+.|.+++.+.+...++|++...+..+....+.++++|+.+++++|
T Consensus 15 ~~~r~~fp~~~---~~~~~-~~~iyLd~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~~ 90 (424)
T PLN02855 15 AETRPDFPILD---QTVNG-SKLVYLDNAATSQKPAAVLDALQDYYEEYNSNVHRGIHALSAKATDAYELARKKVAAFIN 90 (424)
T ss_pred HHHHHhCchhc---cccCC-CCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHHHcC
Confidence 66899998654 11223 257999999999999999999999888887888765555566677888999999999999
Q ss_pred CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH----HcCceEEEEecC
Q 038499 136 GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----QSLAEVVEIGLD 211 (609)
Q Consensus 136 ~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~ 211 (609)
+++.++|+|+ +|+|++++.++..+++. .+++|| .|+++..+|+++...|+ ..|++++.++++
T Consensus 91 ~~~~~~v~~t-~g~t~al~~i~~~~~~~-----------~~~~gd--~vl~~~~~~~s~~~~~~~~a~~~g~~v~~v~~~ 156 (424)
T PLN02855 91 ASTSREIVFT-RNATEAINLVAYTWGLA-----------NLKPGD--EVILSVAEHHSNIVPWQLVAQKTGAVLKFVGLT 156 (424)
T ss_pred CCCCCEEEEe-CCHHHHHHHHHHHhhhh-----------cCCCcC--EEEECCCccHHHHHHHHHHHHHcCCEEEEEecC
Confidence 9654489999 78888999988765311 146888 69999999999877764 469999999998
Q ss_pred CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccE
Q 038499 212 DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDA 291 (609)
Q Consensus 212 ~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~ 291 (609)
.++.+|+++|+++++ ++++++++++++|+||.+.|+++|+++||++|+++++|++|+.|..++++..+ ++|+
T Consensus 157 ~~~~~~~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~a~~~g~~~~~~~~~---~~d~ 228 (424)
T PLN02855 157 PDEVLDVEQLKELLS-----EKTKLVATHHVSNVLGSILPVEDIVHWAHAVGAKVLVDACQSVPHMPVDVQTL---GADF 228 (424)
T ss_pred CCCCcCHHHHHHHhc-----cCceEEEEeCccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCcCCCchhc---CCCE
Confidence 777899999999998 68999999999999999999999999999999999999999999999988765 7899
Q ss_pred EEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHH
Q 038499 292 IFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWV 371 (609)
Q Consensus 292 v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~ 371 (609)
+++|+||++ ||.|+|++++++++ ++.++|...||+.+.... . +...+...+.|++.||+++.+++.+..++..
T Consensus 229 ~~~s~~K~~-gp~G~G~l~~~~~~--~~~~~p~~~g~~~~~~~~--~--~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~ 301 (424)
T PLN02855 229 LVASSHKMC-GPTGIGFLWGKSDL--LESMPPFLGGGEMISDVF--L--DHSTYAPPPSRFEAGTPAIGEAIGLGAAIDY 301 (424)
T ss_pred EEeeccccc-CCCccEEEEEchhh--hhcCCCEecCCCceeeee--c--CccccCCChhhccCCChHHHHHHHHHHHHHH
Confidence 999999965 58899999999998 667777665555432221 0 1111222356888999998887654444443
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC---CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHH
Q 038499 372 KEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTS---TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATL 448 (609)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~---~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 448 (609)
...+|.+.+.+++.++++++++.|+++++++++++.+ ..+.++++|.+.. .+..++.+.
T Consensus 302 ~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v~~~~~~------------------~~~~~v~~~ 363 (424)
T PLN02855 302 LSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALCAFNVEG------------------IHPTDLSTF 363 (424)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEEEEEECC------------------cCHHHHHHH
Confidence 4677999999999999999999999999999998643 3567888888754 457789999
Q ss_pred HhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 449 LNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 449 L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
|.+++||.++.|++|+.+. +..+++ ++++|+|+++|+|++|+++++++|++++....
T Consensus 364 L~~~~gI~v~~g~~c~~~~-~~~~g~--------------------~~~iRiS~~~ynt~~di~~l~~~l~~~~~~~~ 420 (424)
T PLN02855 364 LDQQHGVAIRSGHHCAQPL-HRYLGV--------------------NASARASLYFYNTKEEVDAFIHALKDTIAFFS 420 (424)
T ss_pred hcccCCEEEechhhhhHHH-HHHhCC--------------------CCeEEEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 9776799999999999543 333332 37899999999999999999999999987754
|
|
| >TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-45 Score=393.50 Aligned_cols=389 Identities=25% Similarity=0.312 Sum_probs=311.7
Q ss_pred HHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 038499 55 LTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL 134 (609)
Q Consensus 55 ~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~ 134 (609)
++.+|++||..+ ++.+|||++++++.|+.|.+++.+++...++|++.+.+..+....+.++++|+.+++++
T Consensus 3 ~~~~r~~fp~l~---------~~~iyld~a~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 73 (398)
T TIGR03392 3 PAQFRQQFPALQ---------DGTVYLDSAATALKPQAVIDATQQFYRLSSGTVHRSQHQQAQSLTARYELARQQVARFL 73 (398)
T ss_pred hhHHHHhCCccC---------CCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 467899998543 25899999999999999999999988777788876655566677888999999999999
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH----HHcCceEEEEec
Q 038499 135 GGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIGL 210 (609)
Q Consensus 135 g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~ 210 (609)
|+++.++|+|| +|++++++.++..+... .+++|| .|++++.+|+++..+| +..|++++.++.
T Consensus 74 g~~~~~~i~~t-~g~t~~l~~~~~~~~~~-----------~~~~gd--~Vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~~ 139 (398)
T TIGR03392 74 NAPDAENIVWT-RGTTESINLVAQSYARP-----------RLQPGD--EIIVSEAEHHANLIPWLMVAQQTGAKVVKLPI 139 (398)
T ss_pred CCCCCCeEEEe-CChHHHHHHHHHHhhhc-----------cCCCCC--EEEECCcchhHHHHHHHHHHHHcCcEEEEEec
Confidence 99633489999 78888999988776200 146788 7999999999976555 456999999999
Q ss_pred CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCcc
Q 038499 211 DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYD 290 (609)
Q Consensus 211 ~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D 290 (609)
+.++.+|+++|+++++ ++|+++++++++|+||.+.|+++|+++||++|+++++|++|+.++.++++..+ ++|
T Consensus 140 ~~~~~~~~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~---~~d 211 (398)
T TIGR03392 140 GADLLPDIRQLPELLT-----PRTRILALGQMSNVTGGCPDLARAITLAHQYGAVVVVDGAQGVVHGPPDVQAL---DID 211 (398)
T ss_pred CCCCCcCHHHHHHHhc-----cCceEEEEECccccccccCCHHHHHHHHHHcCCEEEEEhhhhcCCCCCChhhc---CCC
Confidence 8888899999999998 68999999999999999999999999999999999999999999888888765 789
Q ss_pred EEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHH
Q 038499 291 AIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFW 370 (609)
Q Consensus 291 ~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~ 370 (609)
++++|+||++| |.|+|++++++++ ++.++|...|+......+ + ........+.+++.||+++.+++.+..++.
T Consensus 212 ~~~~s~~K~~g-p~G~G~l~~~~~~--~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~e~GT~~~~~~~a~~~al~ 284 (398)
T TIGR03392 212 FYAFSGHKLYG-PTGIGVLYGKTEL--LEAMPPWQGGGKMLSHVS-F---DGFIPQAVPHRFEAGTPNIAGVIGLSAALE 284 (398)
T ss_pred EEEEecccccC-CCceEEEEEcHHH--HhhCCCeecCCceEeecc-c---cccccCCChhhccCCCCCHHHHHHHHHHHH
Confidence 99999999765 8889999999998 566766543333322211 1 111122345788899999877764444443
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHh
Q 038499 371 VKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLN 450 (609)
Q Consensus 371 ~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 450 (609)
..+..|.+.+.++..++++++.+.|+++|+++++++. ..++++|.+.+ ++..++.+.|.
T Consensus 285 ~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~~---~~~i~~~~~~~------------------~~~~~l~~~L~ 343 (398)
T TIGR03392 285 WLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRCP---GSSLLAFDFAG------------------VHHSDLAALLA 343 (398)
T ss_pred HHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC---CCcEEEEEeCC------------------cCHHHHHHHHH
Confidence 3366799999999999999999999999999988652 45788887644 45778999886
Q ss_pred hhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 451 DLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 451 ~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+ +||.++.|++|+.++.. .++ .++++|+|+++|+|++|+++++++|+.+++.
T Consensus 344 ~-~gI~v~~g~~~~~~~~~-~~g--------------------~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~~ 395 (398)
T TIGR03392 344 E-SGIALRAGQHCAQPLMA-ALG--------------------VSGTLRASFAPYNTQQDVDALVDAVGAALEL 395 (398)
T ss_pred h-CCEEEecCccchHHHHH-HhC--------------------CCCEEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 5 69999999999854322 112 2489999999999999999999999998765
|
Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems. |
| >PRK10874 cysteine sulfinate desulfinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=389.10 Aligned_cols=388 Identities=24% Similarity=0.288 Sum_probs=311.9
Q ss_pred HHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 038499 55 LTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL 134 (609)
Q Consensus 55 ~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~ 134 (609)
++.+|++||..+ ++.+|||+++.++.|+.|.+++.+.+...++|++...+..+....+.++++|+.+++++
T Consensus 6 ~~~~r~~fp~l~---------~~~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~ 76 (401)
T PRK10874 6 PAQFRAQFPALQ---------DAGVYLDSAATALKPQAVIEATQQFYSLSAGNVHRSQFAAAQRLTARYEAAREQVAQLL 76 (401)
T ss_pred HHHHHHhCCCcC---------CceEEEeCCcccCCCHHHHHHHHHHHHhccCCCCCcccHHHHHHHHHHHHHHHHHHHHc
Confidence 477999998543 25899999999999999999999999888889887656667788899999999999999
Q ss_pred CC-CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH----HcCceEEEEe
Q 038499 135 GG-GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----QSLAEVVEIG 209 (609)
Q Consensus 135 g~-~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~ 209 (609)
|+ +++ +|+|+ +|++++++.++..+.. ..+++|| .|++++.+|+++..+|. ..|++++.++
T Consensus 77 g~~~~~-~i~~~-~~~t~~i~~~~~~~~~-----------~~~~~gd--~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v~ 141 (401)
T PRK10874 77 NAPDAK-NIVWT-RGTTESINLVAQSYAR-----------PRLQPGD--EIIVSEAEHHANLVPWLMVAQQTGAKVVKLP 141 (401)
T ss_pred CCCCCC-EEEEE-CCHHHHHHHHHHHhhh-----------ccCCCcC--EEEECCcchHHHHHHHHHHHHHhCCEEEEEe
Confidence 99 454 89998 7888899999887620 0146888 79999999999876664 4699999999
Q ss_pred cCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCc
Q 038499 210 LDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGY 289 (609)
Q Consensus 210 ~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~ 289 (609)
.+.++.+|+++++++++ ++|+++++++++|+||.+.|+++|+++||++|+++++|++|+.++.++++..+ ++
T Consensus 142 ~~~~~~~d~~~l~~~i~-----~~t~lv~i~~~~n~tG~~~~~~~i~~l~~~~g~~~ivD~a~~~g~~~~~~~~~---~~ 213 (401)
T PRK10874 142 LGADRLPDVDLLPELIT-----PRTRILALGQMSNVTGGCPDLARAITLAHQAGMVVMVDGAQGAVHFPADVQAL---DI 213 (401)
T ss_pred cCCCCcCCHHHHHHhcC-----cCcEEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEECCcccccccCCchhc---CC
Confidence 98888899999999997 68999999999999999999999999999999999999999999888888765 78
Q ss_pred cEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHH
Q 038499 290 DAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAF 369 (609)
Q Consensus 290 D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~ 369 (609)
|++++|+||++| |.|+|+++++++. ++.+.|...|+...... .+ .. .-......+++.||+++...+....++
T Consensus 214 d~~~~s~~K~~g-p~G~G~l~~~~~~--~~~~~~~~~~~~~~~~~-~~--~~-~~~~~~~~~~e~Gt~~~~~~~al~~al 286 (401)
T PRK10874 214 DFYAFSGHKLYG-PTGIGVLYGKSEL--LEAMSPWQGGGKMLTEV-SF--DG-FTPQSAPWRFEAGTPNVAGVIGLSAAL 286 (401)
T ss_pred CEEEEecccccC-CCccEEEEEchHH--HhcCCCeecCCcceEee-cc--Cc-cCCCCChhhccCCCcCHHHHHHHHHHH
Confidence 999999999765 8889999999998 56676654333322111 11 00 111123567889999987765443333
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHH
Q 038499 370 WVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLL 449 (609)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 449 (609)
...+..|.+.+.++.+++++++.+.|+++|+++++.+. ..++++|.+.. ++..++.+.|
T Consensus 287 ~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~---~~~i~~~~~~~------------------~~~~~~~~~L 345 (401)
T PRK10874 287 EWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRCQ---DSSLLAFDFAG------------------VHHSDLVTLL 345 (401)
T ss_pred HHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCC---CCcEEEEEECC------------------cCHHHHHHHH
Confidence 33356789999999999999999999999999988652 45778877643 4567888888
Q ss_pred hhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 450 NDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 450 ~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+ .||.+++|+.|+.+.... ++ .++++|+|+++|+|++|+++++++|+++++.
T Consensus 346 ~~-~gI~v~~g~~~~~~~~~~-~g--------------------~~~~iRiS~~~~nt~edid~ll~al~~~~~~ 398 (401)
T PRK10874 346 AE-YGIALRAGQHCAQPLLAA-LG--------------------VTGTLRASFAPYNTQSDVDALVNAVDRALEL 398 (401)
T ss_pred HH-CCcEEeccccchHHHHHH-hC--------------------CCCEEEEEecccCCHHHHHHHHHHHHHHHHH
Confidence 55 699999999998543221 12 1489999999999999999999999998775
|
|
| >TIGR01979 sufS cysteine desulfurases, SufS subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-43 Score=380.15 Aligned_cols=395 Identities=27% Similarity=0.391 Sum_probs=315.6
Q ss_pred HHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC
Q 038499 57 WLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG 136 (609)
Q Consensus 57 ~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~ 136 (609)
.+|++|+..+ ..+.| ++++|||+++.|+.|+.|.+++.+.+...++|++.+.+..+......++++|+.+++++|+
T Consensus 2 ~~~~~f~~~~---~~~~~-~~~~yld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~ 77 (403)
T TIGR01979 2 NIRADFPILK---RKING-KPLVYLDSAATSQKPQQVIDAVAEYYRNSNANVHRGIHTLSVRATEAYEAVREKVAKFINA 77 (403)
T ss_pred chhhhCchhc---CCCCC-CceEEEeCccccCCCHHHHHHHHHHHHhCCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCc
Confidence 4678887543 12333 3679999999999999999999998888888888755555666778899999999999999
Q ss_pred CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH----HcCceEEEEecCC
Q 038499 137 GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----QSLAEVVEIGLDD 212 (609)
Q Consensus 137 ~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~~ 212 (609)
++.++|+|+ +|++++++.++..+... .+++|| .|+++..+|+++...|+ ..|++++.++.++
T Consensus 78 ~~~~~v~~~-~g~t~~l~~~~~~~~~~-----------~~~~g~--~vl~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~ 143 (403)
T TIGR01979 78 ASDEEIVFT-RGTTESINLVAYSWGDS-----------NLKAGD--EIVISEMEHHANIVPWQLLAERTGATLKFIPLDD 143 (403)
T ss_pred CCCCeEEEe-CCHHHHHHHHHHHhhhh-----------cCCCCC--EEEECcchhhHHHHHHHHHHHhcCcEEEEEecCC
Confidence 843489998 78888999888765311 136788 79999999999876654 4699999999998
Q ss_pred CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEE
Q 038499 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAI 292 (609)
Q Consensus 213 ~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v 292 (609)
++.+|+++|+++++ ++|+++++++++|+||.+.|+++|+++||+||+++++|++++.+..++++... ++|++
T Consensus 144 ~~~~~~~~l~~~i~-----~~~~lv~~~~~~~~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~g~~~~~~~~~---~~d~~ 215 (403)
T TIGR01979 144 DGTLDLDDLEKLLT-----EKTKLVAITHVSNVLGTVNPVEEIAKLAHQVGAKVLVDGAQAVPHMPVDVQAL---DCDFY 215 (403)
T ss_pred CCCCCHHHHHHHhc-----cCCeEEEEEcccccccccCCHHHHHHHHHHcCCEEEEEchhhcCccccCcccc---CCCEE
Confidence 89999999999998 68999999999999999999999999999999999999999999988888765 78999
Q ss_pred EEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHH
Q 038499 293 FLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK 372 (609)
Q Consensus 293 ~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~ 372 (609)
++|+||++| |.|+|++++++++ ++.+.|...||++..... .... .+.....+++.||+++..++.+..++...
T Consensus 216 ~~s~~K~~g-p~G~g~l~~~~~~--~~~~~~~~~g~~~~~~~~---~~~~-~~~~~~~~~~~gt~~~~~~~al~~al~~~ 288 (403)
T TIGR01979 216 VFSGHKMYG-PTGIGVLYGKEEL--LEQMPPFLGGGEMIAEVS---FEET-TYNEAPHKFEAGTPNIAGVIGLGAAIDYL 288 (403)
T ss_pred EEecccccC-CCCceEEEEchHH--HhcCCCeecCCCceeecc---cCcc-ccCCChhhcCCCCccHHHHHHHHHHHHHH
Confidence 999999875 8889999999988 566777766665543321 1111 12233567788999988776555444444
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC-CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 038499 373 EYIGHEVIKKQEETYIERALERLLPNQNIKILGNTS-TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLND 451 (609)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~-~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 451 (609)
...|.+.+.++..++++++.+.|+.+++++++++.+ ..+.++++|.+.. .+..++.+.|.
T Consensus 289 ~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~~~~------------------~~~~~~~~~L~- 349 (403)
T TIGR01979 289 EAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFNVEG------------------VHPHDVGTILD- 349 (403)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEEeCC------------------cCHHHHHHHHh-
Confidence 567899999999999999999999999999998643 2467788887654 35678888885
Q ss_pred hcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 452 LFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 452 ~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
++||.++.|++|+.|... ..+ .++++|||+++|+|++|+++++++|+.+++.
T Consensus 350 ~~gI~v~~g~~~~~~~~~-~~~--------------------~~~~iRiS~~~~~t~~di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 350 EEGIAVRSGHHCAQPLMR-RFG--------------------VPATCRASFYIYNTEEDIDALVEALKKVRKF 401 (403)
T ss_pred hCCEEEcchhhhhHHHHH-HhC--------------------CCCEEEEEeccCCCHHHHHHHHHHHHHHHHH
Confidence 579999999999855311 111 2589999999999999999999999988765
|
This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved. |
| >PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-44 Score=383.45 Aligned_cols=366 Identities=30% Similarity=0.450 Sum_probs=300.8
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
||||+++.++.|+.|++++.+++...++|++.+.+..+....++++++|+.+++++|++++++|+|++ |+|.+++.++.
T Consensus 1 iYld~~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~-~~t~a~~~~~~ 79 (371)
T PF00266_consen 1 IYLDNAGTGPMPKSVLEAISDYLRNFYANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTS-NGTEALNAVAS 79 (371)
T ss_dssp EEEBTSSS-B-BHHHHHHHHHHHHHSGSSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEES-SHHHHHHHHHH
T ss_pred CEeeCCCccCCCHHHHHHHHHHHHHhhhcCcccccchhhhhhHHHHHHHHHHHHhcCCcccccccccc-ccchhhhhhhh
Confidence 79999999999999999999999999999977767778888999999999999999999844899995 55558999988
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
.+.. .+++|+ .|++...+|+++..+|.. .|++++.++.+.++.+|+++++++|+ +++
T Consensus 80 ~l~~------------~~~~g~--~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~~~~~~~~~~~~~~~l~-----~~~ 140 (371)
T PF00266_consen 80 SLLN------------PLKPGD--EVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPADPGGSLDLEDLEEALN-----PDT 140 (371)
T ss_dssp HHHH------------HGTTTC--EEEEEESSHHHHHHHHHHHHHHTTEEEEEEEEGTTSSCSHHHHHHHHH-----TTE
T ss_pred cccc------------cccccc--ccccccccccccccccccccccchhhhccccccccchhhhhhhhhhhc-----ccc
Confidence 7631 147788 799999999999977753 58999999998889999999999998 799
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
+++++++++|.||.+.|+++|+++||++|+++++|++|++|..++|+..+ ++|++++|+|| ++||.|+|+|+++++
T Consensus 141 ~lv~~~~~~~~tG~~~pi~~I~~~~~~~~~~~~vD~~~~~g~~~id~~~~---~~D~~~~s~~K-l~gp~G~g~l~v~~~ 216 (371)
T PF00266_consen 141 RLVSISHVENSTGVRNPIEEIAKLAHEYGALLVVDAAQSAGCVPIDLDEL---GADFLVFSSHK-LGGPPGLGFLYVRPE 216 (371)
T ss_dssp SEEEEESBETTTTBBSSHHHHHHHHHHTTSEEEEE-TTTTTTSS--TTTT---TESEEEEESTS-TTSSSTEEEEEEEHH
T ss_pred ceEEeecccccccEEeeeceehhhhhccCCceeEechhcccccccccccc---ccceeeecccc-cCCCCchhhheehhh
Confidence 99999999999999999999999999999999999999999999999987 89999999999 888999999999999
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
+ +..++|...|+++..... .....+.....+++.||+++..++....++...+..|.+.+.++..++.+++.+.
T Consensus 217 ~--~~~~~p~~~~~~~~~~~~----~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~ 290 (371)
T PF00266_consen 217 A--IERLRPAKPGGGYLDFPS----LQEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREA 290 (371)
T ss_dssp H--HHHHHTSSSSSSTTTHHH----HHHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h--hhcccccccccccccccc----chhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhh
Confidence 8 556777777776422110 0111123445678899999988765444444447789999999999999999999
Q ss_pred hCCCCceEEeCCC-CCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcC
Q 038499 395 LLPNQNIKILGNT-STKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 395 L~~~p~i~v~~~~-~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~ 473 (609)
|.++++++++++. ...+.++++|.+.. .+...+.+.|.++ ||.++.|+.|+.| .+..++
T Consensus 291 l~~~~~~~~~~~~~~~~~~~i~~~~~~~------------------~~~~~~~~~L~~~-~I~~~~G~~~~~~-~~~~~~ 350 (371)
T PF00266_consen 291 LEELPGIEVLGPDDEPRRPSIVSFNLPG------------------SDADDVVKYLEER-GIAVSTGSACAGP-SLDILG 350 (371)
T ss_dssp HHHTTTEEESSSSCGGBGTTEEEEEETT------------------SSHHHHHHHHHHH-TEEEEESTTTCHH-HHHHHH
T ss_pred hhcCCceeEeeecccccccceEEEeecC------------------CCHHHHHHHHhhc-CEEEeccCcccHH-HHHHhC
Confidence 9999999998853 34678899998865 5789999999876 9999999999954 333334
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHH
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFT 514 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~l 514 (609)
+ .+.||+|+++|+|++|||+|
T Consensus 351 ~--------------------~~~iRvS~~~~nt~~dv~~l 371 (371)
T PF00266_consen 351 M--------------------GGVIRVSLHYYNTEEDVDRL 371 (371)
T ss_dssp T--------------------TTEEEEE-GTTSSHHHHHHH
T ss_pred C--------------------CCEEEEeccCCCCHHHHhhC
Confidence 3 38999999999999999986
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B .... |
| >PLN02651 cysteine desulfurase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-43 Score=373.56 Aligned_cols=353 Identities=22% Similarity=0.286 Sum_probs=287.9
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
+|||+++.++.|+.|.+++.+.+...++|++.+.+..+....+.++++|+.+++++|++++ +|+|+ +|++++++.++.
T Consensus 1 iYld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~t-~~~t~a~~~~l~ 78 (364)
T PLN02651 1 LYLDMQATTPIDPRVLDAMLPFLIEHFGNPHSRTHLYGWESEDAVEKARAQVAALIGADPK-EIIFT-SGATESNNLAIK 78 (364)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhCCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHHHHHHHHH
Confidence 6999999999999999999998877788988744455667788999999999999999876 89999 566667776655
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH---HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR---QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~---~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
.+-. ..+++|+ .|+++..+|+++...|. ..|++++.++.++++.+|+++|+++|+ ++++
T Consensus 79 ~~~~-----------~~~~~g~--~vl~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~i~-----~~t~ 140 (364)
T PLN02651 79 GVMH-----------FYKDKKK--HVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKSDGLVDLDELAAAIR-----PDTA 140 (364)
T ss_pred HHHH-----------hccCCCC--EEEEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC-----CCcE
Confidence 4310 0025677 79999999999887765 358999999998888999999999998 6899
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
++++++++|+||.+.|+++|+++||+||+++++|++|++|+.++|+..+ ++|++++|+||| +||.|+|+|+++++.
T Consensus 141 lv~v~~~~n~tG~~~~l~~I~~~~~~~g~~~~vD~a~~~g~~~~~~~~~---~~D~~~~s~hK~-~gp~G~g~l~v~~~~ 216 (364)
T PLN02651 141 LVSVMAVNNEIGVIQPVEEIGELCREKKVLFHTDAAQAVGKIPVDVDDL---GVDLMSISGHKI-YGPKGVGALYVRRRP 216 (364)
T ss_pred EEEEECCCCCceecccHHHHHHHHHHcCCEEEEEcchhhCCcccCcccC---CCCEEEechhhh-CCCCceEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999999886 899999999998 679999999999988
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALE 393 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~ 393 (609)
+..+.|...||++ +.+++.||+++.+++ .++++++. . +.+.+.++.+++.+++.+
T Consensus 217 --~~~l~p~~~g~~~------------------~~~~~~GT~~~~~~~~l~~al~~~~--~-~~~~i~~~~~~l~~~l~~ 273 (364)
T PLN02651 217 --RVRLEPLMSGGGQ------------------ERGRRSGTENTPLVVGLGAACELAM--K-EMDYDEKHMKALRERLLN 273 (364)
T ss_pred --CCCCCccccCCCc------------------cCCccCCCccHHHHHHHHHHHHHHH--H-hHHHHHHHHHHHHHHHHH
Confidence 5677787777654 345678999987765 45666653 2 458899999999999999
Q ss_pred HhCC-CCceEEeCCCC-CCC-cceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh---
Q 038499 394 RLLP-NQNIKILGNTS-TKR-QAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY--- 467 (609)
Q Consensus 394 ~L~~-~p~i~v~~~~~-~~r-~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~--- 467 (609)
.|++ +|+++++++.+ ..+ .++++|.+.+ +++.++.+.|.+ |.++.|++|+.+.
T Consensus 274 ~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~------------------~~~~~~~~~L~~---i~v~~g~~c~~~~~~~ 332 (364)
T PLN02651 274 GLRAKLGGVRVNGPRDPEKRYPGTLNLSFAY------------------VEGESLLMGLKE---VAVSSGSACTSASLEP 332 (364)
T ss_pred HHHhhCCCEEEECCCCcccCcCCEEEEEeCC------------------CCHHHHHHHhCC---EEEEchhhcCCCCCCc
Confidence 9985 78999999743 234 4588888754 568889998843 9999999999652
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHH
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid 512 (609)
++.+..++..... ..+.+|+|+++|||++|||
T Consensus 333 ~~~~~~~g~~~~~-------------~~~~vR~S~~~~~t~~did 364 (364)
T PLN02651 333 SYVLRALGVPEEM-------------AHGSLRLGVGRFTTEEEVD 364 (364)
T ss_pred CHHHHHcCCChHH-------------hCceEEEEcCCCCCHHHcC
Confidence 3334334321111 2589999999999999985
|
|
| >TIGR03402 FeS_nifS cysteine desulfurase NifS | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-43 Score=372.38 Aligned_cols=365 Identities=24% Similarity=0.315 Sum_probs=292.4
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
+|||+++.++.|+.|.+++.+.+...++|++.. +..+....+.++++|+.+++++|++++ +|+|+ +|++.+++.++.
T Consensus 1 ~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~t-~~~t~a~~~al~ 77 (379)
T TIGR03402 1 IYLDNNATTRVDPEVLEAMLPYFTEYFGNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPD-EIIFT-SGGTESDNTAIK 77 (379)
T ss_pred CcCCCcCCCCCCHHHHHHHHHHHHhcCCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CcHHHHHHHHHH
Confidence 699999999999999999999887777888864 445667788899999999999999876 89999 566777877766
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH---cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ---SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
.+.. ..++++ +|++++.+|+++...|.. .|++++.++.+++|.+|+++++++++ ++++
T Consensus 78 ~~~~------------~~~~~~--~vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~g~~~~~~l~~~i~-----~~~~ 138 (379)
T TIGR03402 78 SALA------------AQPEKR--HIITTAVEHPAVLSLCQHLEKQGYKVTYLPVDEEGRLDLEELRAAIT-----DDTA 138 (379)
T ss_pred HHHH------------hcCCCC--eEEEcccccHHHHHHHHHHHHcCCEEEEEccCCCCcCCHHHHHHhcC-----CCcE
Confidence 5410 013445 799999999998877654 59999999998888999999999997 6899
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
++++++++|+||.+.|+++|+++||+||+++++|++|+.|+.++|+..+ ++|++++|+|| ++||.|+|+++++++.
T Consensus 139 lv~i~~~~n~tG~~~~~~~I~~l~~~~g~~vivD~~~~~g~~~~~~~~~---~~D~~~~s~~K-~~gp~G~g~l~v~~~~ 214 (379)
T TIGR03402 139 LVSVMWANNETGTIFPIEEIGEIAKERGALFHTDAVQAVGKIPIDLKEM---NIDMLSLSGHK-LHGPKGVGALYIRKGT 214 (379)
T ss_pred EEEEEcccCCeeecccHHHHHHHHHHcCCEEEEECcccccccccCcccC---CCCEEEEcHHH-cCCCCceEEEEECCCC
Confidence 9999999999999999999999999999999999999999999999875 89999999999 5569999999999876
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR--AALAFWVKEYIGHEVIKKQEETYIERALE 393 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~~~~ 393 (609)
.+.|...|+.. +.+.+.||+++..++. +++++. .. +.+.+.++.+++++++++
T Consensus 215 ----~~~p~~~g~~~------------------~~~~~~gt~~~~~~~~l~~al~~~--~~-~~~~~~~~~~~l~~~l~~ 269 (379)
T TIGR03402 215 ----RFRPLLRGGHQ------------------ERGRRAGTENVPGIVGLGKAAELA--TE-HLEEENTRVRALRDRLEA 269 (379)
T ss_pred ----CCCCcccCCcc------------------CCCcCCCCccHHHHHHHHHHHHHH--HH-hHHHHHHHHHHHHHHHHH
Confidence 24566555433 3345689998877664 444443 22 567888999999999999
Q ss_pred HhCC-CCceEEeCCCCCCCc-ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh---
Q 038499 394 RLLP-NQNIKILGNTSTKRQ-AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG--- 468 (609)
Q Consensus 394 ~L~~-~p~i~v~~~~~~~r~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~--- 468 (609)
.|++ ++++++.++.. .+. ++++|.+.. .++.++...|. .+||.+++|++|+.+..
T Consensus 270 ~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~l~-~~gI~v~~g~~c~~~~~~~~ 329 (379)
T TIGR03402 270 GLLARIPDARLNGDPT-KRLPNTVNISFEY------------------IEGEAILLLLD-MEGICASSGSACTSGSLEPS 329 (379)
T ss_pred HHHhhCCCEEEeCCCc-cCCCCEEEEEecC------------------CCHHHHHHhhc-cCCEEEEchhhcCCCCCCcC
Confidence 9985 89999988643 344 467776654 46788888884 57999999999986532
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
+.+..++.+.. ..++.||+|+++|+|++||++++++|+.+++..+.
T Consensus 330 ~~~~~lg~~~~-------------~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~~~~~ 375 (379)
T TIGR03402 330 HVLRAMGVPHT-------------AAHGSIRFSLSRYNTEEDIDYVLEVLPPIIARLRA 375 (379)
T ss_pred HHHHHcCCChh-------------hcCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 22333332111 13589999999999999999999999999887554
|
Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403. |
| >TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-42 Score=364.69 Aligned_cols=370 Identities=20% Similarity=0.262 Sum_probs=290.9
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
+|||++++++.++.|++++.+.+...++|++.. +..+.......+++++.+++.+|+.+.++|+|| +|++++++.++.
T Consensus 1 ~yld~aa~~~~~~~v~~~~~~~~~~~~~n~~~~-~~~~~~~~~~l~~a~~~~~~~~~~~~~~~i~~t-~g~teal~~~~~ 78 (382)
T TIGR03403 1 VYLDNNATTMLDPKVKELMDPFFCDIYGNPNSL-HQFGTATHPAIAEALDKLYKGINARDLDDIIIT-SCATESNNWVLK 78 (382)
T ss_pred CcccCcCCCCCCHHHHHHHHHHHHhcCcCCccc-cHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEe-CCHHHHHHHHHH
Confidence 599999999999999999999998888999864 455666677788888999988988333489998 788889998877
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH---HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR---QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~---~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
.+.... .+++++. .|+++..+|+++...|. ..|++++.+++++++.+|+++|+++++ ++++
T Consensus 79 ~~~~~~----------~~~~~~~-~vi~~~~e~ps~~~~~~~~~~~G~~v~~v~~~~~g~~d~~~l~~~i~-----~~t~ 142 (382)
T TIGR03403 79 GVYFDE----------ILKGGKN-HIITTEVEHPAVRATCAFLESLGVEVTYLPINEQGTITAEQVREAIT-----EKTA 142 (382)
T ss_pred HHHHhh----------cccCCCC-EEEEcCCccHHHHHHHHHHHHCCCEEEEEecCCCCCCCHHHHHHhcc-----cCCe
Confidence 642000 0134322 79999999999987764 469999999998889999999999998 6789
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
++++++++|+||.+.|+++|.++||++|+++++|++++.|+.++++..+ ++|++++|+|||+| |.|+|++++++..
T Consensus 143 lv~~~~~~n~tG~~~~~~~I~~la~~~g~~~ivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~~g-p~G~g~l~vr~~~ 218 (382)
T TIGR03403 143 LVSVMWANNETGMIFPIKEIGEICKERGVLFHTDAVQAIGKIPVDVQKA---GVDFLSFSAHKFHG-PKGVGGLYIRKGV 218 (382)
T ss_pred EEEEEcccCCCccccCHHHHHHHHHHcCCEEEEechhhcCCCccCcccc---CCCEEEEcchhhCC-CCceEEEEECCCC
Confidence 9999999999999999999999999999999999999999998888765 89999999999865 8889999999876
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL 395 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L 395 (609)
.+.|...|+++ ..+.+.||+++.+.+.++.++..... +.+.+.++.+.+++++.+.|
T Consensus 219 ----~~~p~~~g~~~------------------~~~~~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L 275 (382)
T TIGR03403 219 ----ELTPLFHGGEH------------------MGGRRSGTLNVPYIVAMGEAMRLANE-YLDFEKSHVRRLRDRLEDAL 275 (382)
T ss_pred ----CCCCcccCCCC------------------CCCcccCCcChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHH
Confidence 34565444433 22345799998887655544433232 47788899999999999999
Q ss_pred CCCCceEEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh---hhhh
Q 038499 396 LPNQNIKILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY---GHHL 471 (609)
Q Consensus 396 ~~~p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~---~~~l 471 (609)
+++++++++++.+ .+.+ +++|.+.. ++...+...|. ++||.++.|++|+... .+.+
T Consensus 276 ~~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~L~-~~gI~v~~g~~c~~~~~~~~~v~ 335 (382)
T TIGR03403 276 LELPDVFVVGDRE-HRVPNTILISIKG------------------VEGEAMLWDLN-KAGIAASTGSACASEDLEANPVM 335 (382)
T ss_pred hcCCCEEEECCCC-CCcCCEEEEEeCC------------------CCHHHHHHhhc-cCCEEEEchhccCCCCCCcCHHH
Confidence 9999999998643 4555 55666543 46788888885 5699999999998431 1222
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
..++.+.. ...+.||+|+++++|++|||+++++|++++++..
T Consensus 336 ~~~g~~~~-------------~~~~~iR~s~~~~~t~~did~~~~~l~~~~~~~~ 377 (382)
T TIGR03403 336 VAIGADKE-------------LAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQRLR 377 (382)
T ss_pred HHcCCChH-------------HhCeeEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22321110 1247899999999999999999999999987654
|
Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation. |
| >KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=357.30 Aligned_cols=376 Identities=23% Similarity=0.322 Sum_probs=298.7
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.+|+|+++.+|.++.|.+++.+++..+|+|||.. .+++.....++++|+.+|+++|+++.| |+|| +|+|++++++
T Consensus 43 ~~vyld~~at~p~~~~Vldam~~~~~~~~~nPh~~--~y~w~~~~~~E~aR~~VAklInAd~~d-IiFt-s~ATEs~Nlv 118 (428)
T KOG1549|consen 43 RPVYLDNQATGPMDPRVLDAMLPYLLEYLGNPHSR--SYGWKAEDAVEAAREQVAKLINADPSD-IVFT-SGATESNNLV 118 (428)
T ss_pred ccEEEecCcCCCCCHHHHHHHHHHHHHhhcCCCcc--ccchhhhHHHHHHHHHHHHHhCCCCCc-EEEe-CCchHHHHHH
Confidence 68999999999999999999999999999999985 467788888999999999999999994 9999 7888899999
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH---cCceEEEEecCCCCCCCHHHHHHHHhhhccCCC
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ---SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~ 233 (609)
+..+.+.. ..+.+.+|++...+|++...+|+. .|++|+++|++.+|.+|++.|++.|+ ++
T Consensus 119 l~~v~~~~------------~~~~~k~iitl~~eH~~v~~s~~~l~~~g~~Vt~lpv~~~~~~d~~~~~~~i~-----~~ 181 (428)
T KOG1549|consen 119 LKGVARFF------------GDKTKKHIITLQTEHPCVLDSCRALQEEGLEVTYLPVEDSGLVDISKLREAIR-----SK 181 (428)
T ss_pred HHHhhccc------------cccccceEEEecccCcchhHHHHHHHhcCeEEEEeccCccccccHHHHHHhcC-----CC
Confidence 98876221 112233899999999999988864 59999999999999999999999999 79
Q ss_pred ceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEec
Q 038499 234 PILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTK 313 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~ 313 (609)
|+++.+.+++|.+|++.|+++|+++|+++|+.+++|+||+.|.+++|++++ ++|++++|.|||+| |.|+|+||+++
T Consensus 182 T~lv~I~~Vnn~~gv~~Pv~EI~~icr~~~v~v~~DaAQavG~i~vDV~el---n~D~~s~s~HK~yg-p~~iGaLYvr~ 257 (428)
T KOG1549|consen 182 TRLVSIMHVNNEIGVLQPVKEIVKICREEGVQVHVDAAQAVGKIPVDVQEL---NADFLSISAHKIYG-PPGIGALYVRR 257 (428)
T ss_pred ceEEEEEecccCccccccHHHHHHHhCcCCcEEEeehhhhcCCccccHHHc---CchheeeecccccC-CCcceEEEEcc
Confidence 999999999999999999999999999999999999999999999999998 99999999999999 54599999998
Q ss_pred hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 314 ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
+.-++ ...|...|||+ ++.++.||.+....+ .+++++..++..+.+.+.. ++.+.+
T Consensus 258 ~~~~~-~~~p~~~GGgq------------------~r~~rsGT~~~~~~~~~gsA~e~~~~~~~~~~~~~~---~~~~~l 315 (428)
T KOG1549|consen 258 KRPRL-RVEPPLSGGGQ------------------ERGLRSGTVATPLAVGLGSAAEFVNKEMAYDEAIIK---RLSEKL 315 (428)
T ss_pred CCCcc-cccCcccCCcc------------------ccccccCCcCchhhhhhHHHHHHHHhhcchhHHHHH---HHHHHH
Confidence 33112 34577778887 677889997665543 5666776555445554444 355566
Q ss_pred HHHhC-CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC---hh
Q 038499 392 LERLL-PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG---PY 467 (609)
Q Consensus 392 ~~~L~-~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~---p~ 467 (609)
...+. .++.+.+.|.......+.++|.+.. ++...+.. +..-+.++.|.+|.. +.
T Consensus 316 l~~i~~~~~~~~~~G~~~~~~~~~~~~~~~~------------------~~g~~~~~---~~~~~~l~s~~a~~~~~~ep 374 (428)
T KOG1549|consen 316 LMGIGQSLPEVTLNGSGKSRYPGLVSLSFPY------------------VEGESLLM---DLKDVALSSGSACTSASLEP 374 (428)
T ss_pred HHHHhhhCchhhccCCcccccccceeeeccc------------------ccCcchhh---hhhhhhhcccchhhcCCCCc
Confidence 66553 4778888877543333444444442 12222333 445688888888864 22
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccCCCc
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYN 533 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~p~y~ 533 (609)
...+...+.+... ...+||||++.|++++|++++.+++.+.+..+..+.|+|.
T Consensus 375 sy~l~~~G~~~~~-------------~~~~iRis~G~y~t~~di~~~~~~i~~~v~~~~~~s~l~~ 427 (428)
T KOG1549|consen 375 SYVLRAIGVDEDL-------------AHSSIRISIGRYTTEEDIDYLVDAIKKLVSLLREMSPLWE 427 (428)
T ss_pred chhhhhcCcchhh-------------hcceeEEeeeeeCcHHHHHHHHHHHHHHHHhccccCCCCC
Confidence 3334444433222 3689999999999999999999999999999999999985
|
|
| >TIGR02006 IscS cysteine desulfurase IscS | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=366.55 Aligned_cols=373 Identities=19% Similarity=0.257 Sum_probs=293.2
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
.+|||+++.+|.++.|.+++.+.+...++|++...+..+....+.++++|+.+++++|++++ +|+|+ +|+|++++.++
T Consensus 4 ~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~-~g~t~a~~~~l 81 (402)
T TIGR02006 4 PIYLDYAATTPVDPRVAEKMMPYLTEKFGNPASRSHSFGWEAEEAVENARNQVAELIGADSR-EIVFT-SGATESNNLAI 81 (402)
T ss_pred cEEeeCCcCCCCCHHHHHHHHHHHHhcCCCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHHHHHHHH
Confidence 48999999999999999999888876778887543434555667899999999999999876 89998 67777888776
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH---HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR---QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~---~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
..+... ..++|+ +|+++..+|+++..+|+ ..|++++.++.++++.+|+++|+++++ +++
T Consensus 82 ~~l~~~-----------~~~~g~--~Vi~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-----~~~ 143 (402)
T TIGR02006 82 KGIAHF-----------YKSKGN--HIITSKTEHKAVLDTCRYLEREGFEVTYLPPKSNGLIDLEELKAAIR-----DDT 143 (402)
T ss_pred HHHHHh-----------hcCCCC--EEEECCCccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhcC-----CCC
Confidence 654200 025677 79999999999988774 359999999998889999999999997 578
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
+++++++++|+||.+.|+++|.++||++|+++++|+++++|+.++++..+ ++|++++|+||++| |.|+|+++++++
T Consensus 144 ~lv~v~~~~n~tG~~~~~~~I~~l~~~~g~~livD~a~a~g~~~~~~~~~---~~D~~~~s~~K~~g-p~G~G~l~~~~~ 219 (402)
T TIGR02006 144 ILVSIMHVNNEIGVIQDIAAIGEICRERKVFFHVDAAQSVGKIPINVNEL---KVDLMSISGHKIYG-PKGIGALYVRRK 219 (402)
T ss_pred EEEEEECCCcCceecccHHHHHHHHHHcCCEEEEEcchhcCCcccCcccc---CCCEEEEehhhhcC-CCceEEEEEccC
Confidence 99999999999999999999999999999999999999999999998865 89999999999865 988999999987
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
. ...+.|...|+++ +.+++.||+++..++..+.++...+ .+.+.+.++.+++++++.+.
T Consensus 220 ~--~~~~~~~~~g~~~------------------~~~~~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~ 278 (402)
T TIGR02006 220 P--RVRLEALIHGGGH------------------ERGMRSGTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNG 278 (402)
T ss_pred C--CCCCCceecCCCc------------------cCCccCCCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHH
Confidence 6 4455666555543 4566789998877654433333222 36788899999999999999
Q ss_pred hCCCCceEEeCCCCCCCcce-EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh-----h
Q 038499 395 LLPNQNIKILGNTSTKRQAI-LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY-----G 468 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~~-~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~-----~ 468 (609)
|+.+++++++++. ..+.|. +.+.+.. .+.+.+...| .+|.++.|++|++.. .
T Consensus 279 l~~~~~v~~~~~~-~~~~p~~~~v~f~~------------------~~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~~ 336 (402)
T TIGR02006 279 IKSIEEVYLNGDL-EHRVPGNLNVSFNY------------------VEGESLIMAL---KDLAVSSGSACTSASLEPSYV 336 (402)
T ss_pred HhcCCCEEEeCCc-cccCCCeEEEEEeC------------------cCHHHHHHhc---CCEEEechhhcCCCCCCccHH
Confidence 9999999998763 235542 2222222 2355666555 489999999998521 1
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccCCC
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLY 532 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~p~y 532 (609)
...+++..+. ..+++|+|+++|+|++|+|+++++|+++++..+.+.+.|
T Consensus 337 l~~lg~~~~~---------------~~~~vR~S~~~~~t~edid~l~~~l~~~~~~~~~~~~~~ 385 (402)
T TIGR02006 337 LRALGINDEL---------------AHSSIRFTIGRFTTEEEIDYAVKLVKSAIDKLRELSPLW 385 (402)
T ss_pred HHHcCCChhh---------------cCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhcchh
Confidence 2223332221 258999999999999999999999999998877666655
|
This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors. |
| >TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-40 Score=349.82 Aligned_cols=367 Identities=24% Similarity=0.328 Sum_probs=289.7
Q ss_pred EEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 79 TYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 79 vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
+|||+++++ +.|+.+.+++.+.+....++++...+..+.+......++++.+++++|+++.++|+|+ +|++++++.++
T Consensus 1 ~yld~a~~~~~~p~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~g~t~al~~~~ 79 (376)
T TIGR01977 1 IYFDNAATTYPKPDEVYEAMADFYKNYGGSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFT-NNATTALNIAL 79 (376)
T ss_pred CCccCcccCCCCCHHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEe-CCHHHHHHHHH
Confidence 699999876 6888999999888876545665443434445668899999999999999755589998 56777888877
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCC
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~ 233 (609)
..+ +++|| .|+++..+|+++..+|.. .|++++.++.+.++.+|+++|+++++ ++
T Consensus 80 ~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~-----~~ 137 (376)
T TIGR01977 80 KGL---------------LKEGD--HVITTPMEHNSVARPLECLKEQIGVEITIVKCDNEGLISPERIKRAIK-----TN 137 (376)
T ss_pred Hhc---------------cCCCC--EEEECcchhhHHHHHHHHHHHHcCcEEEEEecCCCCCcCHHHHHHhcC-----CC
Confidence 654 47888 699999999998766543 49999999988888899999999997 68
Q ss_pred ceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEec
Q 038499 234 PILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTK 313 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~ 313 (609)
++++++++++|+||.+.|+++|.++||++|+++++|+++++|..++++... ++|++++|+|||++||.|+|++++++
T Consensus 138 ~~~v~~~~~~n~tG~~~~~~~i~~l~~~~~~~livD~a~~~g~~~~~~~~~---~~D~~~~s~~K~l~~p~g~g~l~~~~ 214 (376)
T TIGR01977 138 TKLIVVSHASNVTGTILPIEEIGELAQENGIFFILDAAQTAGVIPIDMTEL---AIDMLAFTGHKGLLGPQGTGGLYIRE 214 (376)
T ss_pred CeEEEEECCCCCccccCCHHHHHHHHHHcCCEEEEEhhhccCccCCCchhc---CCCEEEecccccccCCCCceEEEEcC
Confidence 999999999999999999999999999999999999999999999988765 89999999999999999999999998
Q ss_pred hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 314 ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
+. .+.+...++... +...+ ........|++.||+++..+. .++++++ ...|.+.+.++.+++++++
T Consensus 215 ~~----~~~~~~~~~~~~-~~~~~-----~~~~~~~~r~~~~t~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~l~~~~ 282 (376)
T TIGR01977 215 GI----KLKPLKSGGTGS-HSALI-----DQPSELPDRFESGTLNTPGIAGLNAGIKFI--EKIGIANIAKKECMLTEKL 282 (376)
T ss_pred Cc----CcCceecCCCcc-ccccc-----cccccchhhccCCCCCHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHH
Confidence 76 234444443221 11000 011223457788998876654 3445544 5679999999999999999
Q ss_pred HHHhCCCCceEEeCCCC-CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhh
Q 038499 392 LERLLPNQNIKILGNTS-TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470 (609)
Q Consensus 392 ~~~L~~~p~i~v~~~~~-~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ 470 (609)
.+.|.++++++++++.+ ..+.++++|.+.. .+..++.+.|.+.+||.++.|..|+.. .+.
T Consensus 283 ~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~------------------~~~~~~~~~L~~~~gi~v~~g~~~~~~-~~~ 343 (376)
T TIGR01977 283 LNGLREINKVKIYGPADPANRVGVVSFTVEG------------------IDSEEVADILDEKFDIATRTGLHCAPL-AHK 343 (376)
T ss_pred HHHHhcCCCeEEeCCCCccccCCeEEEEECC------------------CCHHHHHHHHhccCCEEEEcccccchH-HHH
Confidence 99999999999997632 3467888888754 467889999977679999999988832 221
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
..+ ..+++.+|++++.++|++|+++++++|+.
T Consensus 344 ~~g------------------~~~~~~iRis~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 344 TIG------------------TFATGTIRLSLGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HhC------------------CCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence 111 11358999999999999999999999975
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown. |
| >PRK14012 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=351.32 Aligned_cols=373 Identities=20% Similarity=0.265 Sum_probs=289.0
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhc--CCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVL--PFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~--~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
.+|||+++.+|.|+.|.+++.+++. ..++|++...+..+......++++|+.+++++|++++ +|+|+ +|+|++++.
T Consensus 4 ~iyld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~-~v~~~-~g~t~al~~ 81 (404)
T PRK14012 4 PIYLDYSATTPVDPRVAEKMMPYLTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLIGADPR-EIVFT-SGATESDNL 81 (404)
T ss_pred eEEecCcCCCCCCHHHHHHHHHHHHhcccCcCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcC-eEEEe-CCHHHHHHH
Confidence 5899999999999999999988886 5678887643334445567889999999999999876 79998 677778888
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH---cCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ---SLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
++.++... .+++|| +|++++.+|+++..+|+. .|++++.++.++++.+|+++|+++|+ +
T Consensus 82 ~l~~l~~~-----------~~~~gd--~Vi~~~~~~~s~~~~~~~~~~~g~~~~~v~~~~~g~~d~~~l~~~i~-----~ 143 (404)
T PRK14012 82 AIKGAAHF-----------YQKKGK--HIITSKTEHKAVLDTCRQLEREGFEVTYLDPQSNGIIDLEKLEAAMR-----D 143 (404)
T ss_pred HHHHHHHh-----------hcCCCC--EEEEecCccHHHHHHHHHHHhCCCEEEEEccCCCCcCCHHHHHHhcC-----C
Confidence 76654200 025777 799999999999877754 49999999998889999999999998 6
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
+++++++++++|+||.+.|+++|.++||++|+++++|+++++|..++++..+ ++|++++|+||++| |.|+|+++++
T Consensus 144 ~t~lv~~~~~~n~tG~~~~~~~I~~la~~~g~~vivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~~g-p~g~G~l~~~ 219 (404)
T PRK14012 144 DTILVSIMHVNNEIGVIQDIAAIGEICRERGIIFHVDAAQSVGKVPIDLSKL---KVDLMSFSAHKIYG-PKGIGALYVR 219 (404)
T ss_pred CCEEEEEECcCCCccchhhHHHHHHHHHHcCCEEEEEcchhcCCcccCcccC---CCCEEEEehhhccC-CCceEEEEEe
Confidence 8999999999999999999999999999999999999999999998888765 78999999999765 8889999999
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERAL 392 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~ 392 (609)
++. ...+.|...|++. ..+++.||+++...+....++...+ .+.+.+.++.+++++++.
T Consensus 220 ~~~--~~~~~~~~~g~~~------------------~~~~~~gt~~~~~~~~l~~al~~~~-~~~~~~~~~~~~l~~~l~ 278 (404)
T PRK14012 220 RKP--RVRLEAQMHGGGH------------------ERGMRSGTLPTHQIVGMGEAARIAK-EEMATENERIRALRDRLW 278 (404)
T ss_pred cCC--CCCCCceecCCCc------------------cCCccCCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHH
Confidence 886 3455565555543 3446678887766553332322222 356678899999999999
Q ss_pred HHhCCCCceEEeCCCCCCCcc---eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh--
Q 038499 393 ERLLPNQNIKILGNTSTKRQA---ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY-- 467 (609)
Q Consensus 393 ~~L~~~p~i~v~~~~~~~r~~---~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~-- 467 (609)
+.|++++++.++++.. .+.+ +++|...+ ...+...| .++.++.|+.|.+.+
T Consensus 279 ~~L~~~~~i~~~~~~~-~~~~~~~~~~~~~~~--------------------~~~~~~~l---~~~~i~~g~~~~~~~~~ 334 (404)
T PRK14012 279 NGIKDIEEVYLNGDLE-QRVPGNLNVSFNYVE--------------------GESLIMAL---KDLAVSSGSACTSASLE 334 (404)
T ss_pred HHHhcCCCEEEeCCcc-ccCCCEEEEEEeCcC--------------------HHHHHHhC---CCeEEEchhhhCCCCCC
Confidence 9999999998876421 2333 34444322 34566665 388899999997531
Q ss_pred ---hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccCCCcc
Q 038499 468 ---GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNF 534 (609)
Q Consensus 468 ---~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~p~y~~ 534 (609)
....+++.+ .+.++.||+|+++++|++|+++++++|+++++..+.+.++|..
T Consensus 335 ~~~~~~~~~~~~---------------~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~~~~~~~~~~~~ 389 (404)
T PRK14012 335 PSYVLRALGLND---------------ELAHSSIRFSLGRFTTEEEIDYAIELVRKSIGKLRELSPLWEM 389 (404)
T ss_pred CCHHHHHcCCCh---------------hhcCceEEEEecCCCCHHHHHHHHHHHHHHHHHHHhhccchhh
Confidence 111122211 1236899999999999999999999999999988877777754
|
|
| >PRK02948 cysteine desulfurase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=345.95 Aligned_cols=368 Identities=20% Similarity=0.230 Sum_probs=284.6
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
++|||++++++.|+.|.+++.+++...++|++.. +..+......++++|+.+++++|++++ +|+|+ +|+++++..++
T Consensus 1 ~~yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~g~~~~-~i~~~-~g~t~a~~~~~ 77 (381)
T PRK02948 1 MIYLDYAATTPMSKEALQTYQKAASQYFGNESSL-HDIGGTASSLLQVCRKTFAEMIGGEEQ-GIYFT-SGGTESNYLAI 77 (381)
T ss_pred CEeccCCCCCCCCHHHHHHHHHHHHhcCCCCccc-cHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CcHHHHHHHHH
Confidence 3899999999999999999999888888888754 556777788999999999999999876 89998 67787777766
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH---HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
..+.-. ..++|+ +|++++.+|+++...| +..|++++.+++++++.+|+++|+++++ +++
T Consensus 78 ~~~~~~-----------~~~~g~--~vv~~~~~h~s~~~~~~~~~~~g~~v~~v~~~~~~~~d~~~l~~~l~-----~~~ 139 (381)
T PRK02948 78 QSLLNA-----------LPQNKK--HIITTPMEHASIHSYFQSLESQGYTVTEIPVDKSGLIRLVDLERAIT-----PDT 139 (381)
T ss_pred HHHHHh-----------ccCCCC--EEEECCcccHHHHHHHHHHHhCCCEEEEEeeCCCCCCCHHHHHHhcC-----CCC
Confidence 554100 014566 7999999999987765 4469999999998888999999999997 578
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
+++++++++|+||.+.|+++|.++|+++|+++++|++++++..++++.+. ++|++++|+||++| |.|+|+++++++
T Consensus 140 ~lv~~~~~~n~tG~~~~~~~I~~l~~~~~~~vivD~~~~~g~~~~~~~~~---~~d~~~~s~~K~~g-p~G~G~l~~~~~ 215 (381)
T PRK02948 140 VLASIQHANSEIGTIQPIAEIGALLKKYNVLFHSDCVQTFGKLPIDVFEM---GIDSLSVSAHKIYG-PKGVGAVYINPQ 215 (381)
T ss_pred EEEEEECCcCCcEeehhHHHHHHHHHHcCCEEEEEChhhccccccCcccC---CCCEEEecHHhcCC-CCcEEEEEEcCC
Confidence 99999999999999999999999999999999999999999888888775 78999999999876 888999999887
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
. .+.+...++.. +.+++.||+++.+.+.+..++.... .+.+.+.++.+++++++.+.
T Consensus 216 ~----~~~~~~~~~~~------------------~~~~~~~t~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~ 272 (381)
T PRK02948 216 V----RWKPVFPGTTH------------------EKGFRPGTVNVPGIAAFLTAAENIL-KNMQEESLRFKELRSYFLEQ 272 (381)
T ss_pred C----CCCCcccCCCC------------------CCCcCCCCccHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 6 12222222211 3456678888877665444433211 25778889999999999999
Q ss_pred hCCCCceEEeCCC-CCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh---hhh
Q 038499 395 LLPNQNIKILGNT-STKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP---YGH 469 (609)
Q Consensus 395 L~~~p~i~v~~~~-~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p---~~~ 469 (609)
|+++ ++++.... ...+.+ +++|.+.. ++..++...| +.+||.++.|++|+.+ .++
T Consensus 273 L~~~-~~~v~~~~~~~~~~~~i~~~~~~~------------------~~~~~~~~~l-~~~gI~v~~g~~c~~~~~~p~~ 332 (381)
T PRK02948 273 IQTL-PLPIEVEGHSTSCLPHIIGVTIKG------------------IEGQYTMLEC-NRRGIAISTGSACQVGKQEPSK 332 (381)
T ss_pred HhcC-CCCEEEeCCCccCcCCEEEEEeCC------------------CCHHHHHHhc-ccCCEEEEchHhcCCCCCCCCH
Confidence 9987 44433221 123444 56666554 4567788777 4579999999999854 234
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
.+..++.+... ..+++|||+++|+|++|+++++++|+.+.+...
T Consensus 333 ~~~~~~~~~~~-------------~~~~lRis~~~~~t~~di~~l~~~l~~~~~~~~ 376 (381)
T PRK02948 333 TMLAIGKTYEE-------------AKQFVRFSFGQQTTKDQIDTTIHALETIGNQFY 376 (381)
T ss_pred HHHHcCCChHH-------------hCceEEEEcCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 34333321110 248999999999999999999999999877644
|
|
| >TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=342.89 Aligned_cols=373 Identities=25% Similarity=0.294 Sum_probs=290.7
Q ss_pred HHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 038499 55 LTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL 134 (609)
Q Consensus 55 ~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~ 134 (609)
++.+|++|+..+ ....+|||+++.++.|+.+.+++.+.+.....+++.. +.......+.++++++.+++++
T Consensus 3 ~~~~r~~f~~~~--------~~~~~yl~~~~~~~~p~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~ia~~~ 73 (397)
T TIGR01976 3 VEAVRGQFPALA--------DGDRVFFDNPAGTQIPQSVADAVSAALTRSNANRGGA-YESSRRADQVVDDAREAVADLL 73 (397)
T ss_pred hhHHHhhCCcCC--------CCCeEEecCCccCCCCHHHHHHHHHHHHhcCCCCCCC-chHHHHHHHHHHHHHHHHHHHc
Confidence 467889998643 0126999999999999999999998886655555432 3334456678899999999999
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH----HHcCceEEEEec
Q 038499 135 GGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIGL 210 (609)
Q Consensus 135 g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~ 210 (609)
|++++ +|+++ +|++.+++.+..++.. .+++|| .|++++.+|+++...| +..|++++.++.
T Consensus 74 ~~~~~-~v~~~-~~~t~~l~~~~~~~~~------------~~~~gd--~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~~~ 137 (397)
T TIGR01976 74 NADPP-EVVFG-ANATSLTFLLSRAISR------------RWGPGD--EVIVTRLDHEANISPWLQAAERAGAKVKWARV 137 (397)
T ss_pred CCCCC-eEEEe-CCHHHHHHHHHHHHHh------------cCCCCC--EEEEcCCchHhHHHHHHHHHHhcCCEEEEEec
Confidence 99876 78888 6777788877766521 146888 7999999999987666 447999999998
Q ss_pred CC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCc
Q 038499 211 DD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGY 289 (609)
Q Consensus 211 ~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~ 289 (609)
++ ++.+|+++|+++++ ++++++++++++|+||.+.|+++|+++||+||+++++|++|+.+..++++..+ ++
T Consensus 138 ~~~~~~~~~~~l~~~i~-----~~~~lv~i~~~~n~tG~~~~~~~i~~~~~~~~~~~ivD~a~~~~~~~~~~~~~---~~ 209 (397)
T TIGR01976 138 DEATGELHPDDLASLLS-----PRTRLVAVTAASNTLGSIVDLAAITELVHAAGALVVVDAVHYAPHGLIDVQAT---GA 209 (397)
T ss_pred cccCCCcCHHHHHHhcC-----CCceEEEEeCCCCCCCccCCHHHHHHHHHHcCCEEEEehhhhccccCCCHHHc---CC
Confidence 76 68899999999997 68999999999999999999999999999999999999999988888887765 78
Q ss_pred cEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHH
Q 038499 290 DAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAAL 367 (609)
Q Consensus 290 D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal 367 (609)
|++++|+|||+| |. +|++++++++ ++.+.+....+ .+.....+++.||+++..++ .+++
T Consensus 210 d~~~~s~~K~~g-~~-~G~l~~~~~~--~~~l~~~~~~~---------------~~~~~~~~~~~gt~~~~~~~~l~~al 270 (397)
T TIGR01976 210 DFLTCSAYKFFG-PH-MGILWGRPEL--LMNLPPYKLTF---------------SYDTGPERFELGTPQYELLAGVVAAV 270 (397)
T ss_pred CEEEEechhhcC-Cc-eEEEEEcHHH--HhhCCCccccC---------------ccCCCcchhcCCCCCHHHHHHHHHHH
Confidence 999999999986 65 7999999988 45555442211 11223567889999876654 4555
Q ss_pred HHHHHHhcC--------------HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC-CCCcceEEEEeccCCCCCcCCCCC
Q 038499 368 AFWVKEYIG--------------HEVIKKQEETYIERALERLLPNQNIKILGNTS-TKRQAILSFNIHSSTINSSLGENT 432 (609)
Q Consensus 368 ~~~~~~~~g--------------~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~-~~r~~~~~f~~~~~~~~~~~~~~~ 432 (609)
+++ ...| .+.+.++..++++++++.|+++++++++++.+ ..+.+++.|.+..
T Consensus 271 ~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~----------- 337 (397)
T TIGR01976 271 DYL--AGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHG----------- 337 (397)
T ss_pred HHH--HHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCC-----------
Confidence 555 3333 67788899999999999999998899987632 3467888776654
Q ss_pred CCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHH
Q 038499 433 KTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512 (609)
Q Consensus 433 ~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid 512 (609)
.+..++.+.|.+ .||.++.|++|..+. +..+++.. +.+++|||+++|+|++|++
T Consensus 338 -------~~~~~l~~~L~~-~gI~v~~~~~~~~~~-~~~~~~~~-----------------~~~~iRis~~~~~t~~di~ 391 (397)
T TIGR01976 338 -------LPPQRVVRRLAD-QGIDAWAGHFYAVRL-LRRLGLND-----------------EGGVVRVGLAHYNTAEEVD 391 (397)
T ss_pred -------cCHHHHHHHHHH-CCeEEEeCccchHHH-HHHhCCCC-----------------CCCeEEEEeeccCCHHHHH
Confidence 356789998855 699999999987432 22223210 2478999999999999999
Q ss_pred HHHHHH
Q 038499 513 FTLEAL 518 (609)
Q Consensus 513 ~ll~al 518 (609)
+++++|
T Consensus 392 ~l~~~l 397 (397)
T TIGR01976 392 RLLEAL 397 (397)
T ss_pred HHHHhC
Confidence 999875
|
This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase. |
| >cd06453 SufS_like Cysteine desulfurase (SufS)-like | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=334.49 Aligned_cols=367 Identities=31% Similarity=0.474 Sum_probs=291.0
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
+|||+++.++.|+.+++++.+.+...+.|++.+.+..+....+...++++.+++++|++..++|+++ +|++.+++.++.
T Consensus 1 ~yl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~-~g~t~a~~~~~~ 79 (373)
T cd06453 1 VYLDNAATSQKPQPVIDAIVDYYRHYNANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFT-RNTTEAINLVAY 79 (373)
T ss_pred CcccCccccCCCHHHHHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEe-CCHHHHHHHHHH
Confidence 5999999999999999999999988888988765566777888999999999999999833489998 677778888887
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
++... ..+|+ .|++++.+|++...++ +..|++++.|+.+.++.+|+++|++++. +++
T Consensus 80 ~l~~~------------~~~g~--~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~-----~~~ 140 (373)
T cd06453 80 GLGRA------------NKPGD--EIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVDDDGQLDLEALEKLLT-----ERT 140 (373)
T ss_pred Hhhhc------------CCCCC--EEEECcchhHHHHHHHHHHHhhcCcEEEEeecCCCCCcCHHHHHHHhc-----CCc
Confidence 76300 01677 6999999999975443 3579999999998888999999999998 579
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
+++++++++|+||.+.|+++|.++|++||+++++|++++.+..++++.+. ++|++++|+||++++ .|+|+++++++
T Consensus 141 ~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~-~g~g~~~~~~~ 216 (373)
T cd06453 141 KLVAVTHVSNVLGTINPVKEIGEIAHEAGVPVLVDGAQSAGHMPVDVQDL---GCDFLAFSGHKMLGP-TGIGVLYGKEE 216 (373)
T ss_pred eEEEEeCcccccCCcCCHHHHHHHHHHcCCEEEEEhhhhcCceeeecccc---CCCEEEeccccccCC-CCcEEEEEchH
Confidence 99999999999999999999999999999999999999998888887765 789999999999997 66899999998
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR--AALAFWVKEYIGHEVIKKQEETYIERAL 392 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~~~ 392 (609)
+ ++.+.+...|+...... ......| .....+++.||+++..++. +++.++ ...|.+.+.++.+++++++.
T Consensus 217 ~--~~~~~~~~~g~~~~~~~---~~~~~~~-~~~~~~~~~~t~~~~~~~al~~al~~l--~~~g~~~~~~~~~~~~~~l~ 288 (373)
T cd06453 217 L--LEEMPPYGGGGEMIEEV---SFEETTY-ADLPHKFEAGTPNIAGAIGLGAAIDYL--EKIGMEAIAAHEHELTAYAL 288 (373)
T ss_pred H--hhcCCCeecCCCccccc---ccccccc-CCCccccCCCCCCHHHHHHHHHHHHHH--HHcCHHHHHHHHHHHHHHHH
Confidence 8 56777665555442211 1111122 2234566778988776553 344433 55688999999999999999
Q ss_pred HHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhc
Q 038499 393 ERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLL 472 (609)
Q Consensus 393 ~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll 472 (609)
+.|.++++++++.+. ..+.++++|.+.. .+..++.+.|.+ .||.+++|+.|..+...
T Consensus 289 ~~l~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~i~~~l~~-~gi~i~~g~~~~~~~~~--- 345 (373)
T cd06453 289 ERLSEIPGVRVYGDA-EDRAGVVSFNLEG------------------IHPHDVATILDQ-YGIAVRAGHHCAQPLMR--- 345 (373)
T ss_pred HHHhcCCCeEEeCCc-cccCCeEEEEECC------------------cCHHHHHHHHHH-CCEEeccCccchhHHHH---
Confidence 999999999998542 2356777777643 356788888865 69999999988854222
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 473 DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 473 ~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
.++ .+++||+|+++++|++|+|+++++|
T Consensus 346 ~~~------------------~~~~iRis~~~~~t~~di~~~~~~l 373 (373)
T cd06453 346 RLG------------------VPGTVRASFGLYNTEEEIDALVEAL 373 (373)
T ss_pred HhC------------------CCCeEEEEecCCCCHHHHHHHHhhC
Confidence 111 2589999999999999999999875
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine. |
| >TIGR01814 kynureninase kynureninase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=338.08 Aligned_cols=383 Identities=16% Similarity=0.154 Sum_probs=277.2
Q ss_pred HHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhh-HHHHHHHHHHHHHH
Q 038499 52 EKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVG-QHTTNMVHEASNYI 130 (609)
Q Consensus 52 ~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~-~~~~~~~~e~r~~i 130 (609)
++.++.+|++|+... .. +.+..+|||+++.|+.|+.|.+++.+++..+ +++....+..+ .......++.++ +
T Consensus 7 ~~~~~~~r~~f~~~~---~~--~~~~~iyld~~a~g~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 79 (406)
T TIGR01814 7 ADPLRALRDEFHLPK---IG--DENAVIYLDGNSLGLMPKAARNALKEELDKW-AKIAIRGHNTGKAPWFTLDESLLK-L 79 (406)
T ss_pred cChHHHHHHhcCCCc---cc--CCCCcEEecCCCcCcCcHHHHHHHHHHHHHH-HHhhhccCccCCCChhhhhhhhcc-c
Confidence 456788999998542 00 1136899999989999999999998776543 33322111111 122233333333 5
Q ss_pred HHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCC-ceEEEECCCCccchHHHHH----HcCceE
Q 038499 131 KKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE-RWVVFVGPHEHHSNLLSWR----QSLAEV 205 (609)
Q Consensus 131 a~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~----~~G~~v 205 (609)
+++|++++ +|+|+ +|+|++++.++..+ +++++ +.+|+++..+|+++..+|. ..|+++
T Consensus 80 -~l~g~~~~-~v~~~-~~~t~~l~~~~~~~---------------~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~ 141 (406)
T TIGR01814 80 -RLVGAKED-EVVVM-NTLTINLHLLLASF---------------YKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTV 141 (406)
T ss_pred -cccCCCCC-cEEEe-CCchHHHHHHHHHh---------------cCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCc
Confidence 89999876 89999 67788899887765 23432 2278899999999877664 458887
Q ss_pred ----EEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccC
Q 038499 206 ----VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDV 281 (609)
Q Consensus 206 ----v~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~ 281 (609)
+.++.+.+|.+|++++++.++.. .++|++|++++++|.||.+.|+++|+++||++|+++++|++|++|+.++|+
T Consensus 142 ~~~~~~~~~~~~g~~~~~~l~~~~~~~--~~~t~lv~~~~v~~~tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~ 219 (406)
T TIGR01814 142 EESMVQIEPREEETLRLEDILDTIEKN--GDDIAVILLSGVQYYTGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDL 219 (406)
T ss_pred ccceEEeccCCCCccCHHHHHHHHHhc--CCCeEEEEEeccccccceecCHHHHHHHHHHcCCEEEEEcccccCCccccc
Confidence 56666667888999999988531 158999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHH
Q 038499 282 RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ 361 (609)
Q Consensus 282 ~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~ 361 (609)
..+ ++|++++|+|||++||.| |+++++++. +..+.|...|+........+.. ...+...+.+++.|||++..
T Consensus 220 ~~~---gvD~~~~s~hK~l~g~pG-~~l~v~~~~--~~~~~p~~~g~~~~~~~~~~~~--~~~~~~~~~~~~~GT~~~~~ 291 (406)
T TIGR01814 220 HDW---GVDFACWCTYKYLNAGPG-AGAFVHEKH--AHTERPRLAGWWGHARPTRFKM--DNTLGLIPCGFRISNPPILS 291 (406)
T ss_pred ccC---CCCEEEEcCccccCCCCC-eEEEEehhh--hhhcCCCCCcccCCCCcccccc--ccccCCCccceeeCCccHHH
Confidence 876 899999999999976667 777776665 3345566555422111110110 01111224577889999888
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----CceEEeCCCC-CCCcceEEEEeccCCCCCcCCCCCCCCC
Q 038499 362 MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN----QNIKILGNTS-TKRQAILSFNIHSSTINSSLGENTKTET 436 (609)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----p~i~v~~~~~-~~r~~~~~f~~~~~~~~~~~~~~~~~~~ 436 (609)
+..+..++......|.+.+.++.+++.+++++.|.++ ++++++++.+ ..+.++++|.+..
T Consensus 292 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~~--------------- 356 (406)
T TIGR01814 292 VAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHPV--------------- 356 (406)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEecC---------------
Confidence 6644434333367799999999999999999999775 4699998743 2466788877642
Q ss_pred CCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHHHHHHH
Q 038499 437 DKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEEFEFTL 515 (609)
Q Consensus 437 ~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~eeid~ll 515 (609)
+..++.+.|.+ .||.+... .++.||+|+ ++|||++|+++++
T Consensus 357 ----~~~~~~~~L~~-~gi~v~~~---------------------------------~~~~iRiS~~~~~nt~~did~l~ 398 (406)
T TIGR01814 357 ----PGKAVFQALIK-RGVIGDKR---------------------------------EPSVIRVAPVPLYNTFVDVYDAV 398 (406)
T ss_pred ----CHHHHHHHHHH-CCEEEecc---------------------------------CCCeEEEechhccCCHHHHHHHH
Confidence 35788888855 59976410 147899999 7999999999999
Q ss_pred HHHHHHH
Q 038499 516 EALEFIA 522 (609)
Q Consensus 516 ~al~~v~ 522 (609)
++|++++
T Consensus 399 ~~l~~~~ 405 (406)
T TIGR01814 399 NVLEEIL 405 (406)
T ss_pred HHHHHHh
Confidence 9998864
|
This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen. |
| >TIGR03235 DNA_S_dndA cysteine desulfurase DndA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-37 Score=323.07 Aligned_cols=345 Identities=22% Similarity=0.287 Sum_probs=270.1
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEV 159 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (609)
|||+++.++.|+.|.+++.+++...++|++...+..+....+.++++|+.+++++|++++ +|+|+ +|++++++.++..
T Consensus 1 yld~a~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~-~v~~~-~g~t~a~~~~l~~ 78 (353)
T TIGR03235 1 YLDHNATTPIDPAVAEAMLPWLLEEFGNPSSRTHEFGHNAKKAVERARKQVAEALGADTE-EVIFT-SGATESNNLAILG 78 (353)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEe-CCHHHHHHHHHHH
Confidence 899999999999999999998876678887643444556678899999999999999876 89998 6778788877765
Q ss_pred hcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH---HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceE
Q 038499 160 MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR---QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPIL 236 (609)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~---~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~l 236 (609)
+... ..++|+. +|+++..+|+++..+|+ ..|++++.++.++++.+|+++|+++++ +++++
T Consensus 79 l~~~-----------~~~~g~~-~vi~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~l~~~l~-----~~~~l 141 (353)
T TIGR03235 79 LARA-----------GEQKGKK-HIITSAIEHPAVLEPIRALERNGFTVTYLPVDESGRIDVDELADAIR-----PDTLL 141 (353)
T ss_pred HHHh-----------cccCCCC-eeeEcccccHHHHHHHHHHHhcCCEEEEEccCCCCcCCHHHHHHhCC-----CCCEE
Confidence 5200 0124422 79999999999987764 369999999998888999999999997 57999
Q ss_pred EEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhh
Q 038499 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALY 316 (609)
Q Consensus 237 v~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~ 316 (609)
+++++++|+||.+.|+++|+++||++|+++++|++|+.|..++++..+ ++|++++|+|||+ ||.|+|+++++++..
T Consensus 142 v~~~~~~n~tG~~~~~~~I~~l~~~~~~~~ivD~a~~~g~~~~~~~~~---~~D~~~~s~~K~~-gp~g~g~l~~~~~~~ 217 (353)
T TIGR03235 142 VSIMHVNNETGSIQPIREIAEVLEAHEAFFHVDAAQVVGKITVDLSAD---RIDLISCSGHKIY-GPKGIGALVIRKRGK 217 (353)
T ss_pred EEEEcccCCceeccCHHHHHHHHHHcCCEEEEEchhhcCCcccccccc---CCCEEEeehhhcC-CCCceEEEEEccCcc
Confidence 999999999999999999999999999999999999999999998865 8999999999996 598999999999862
Q ss_pred ccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
....+.|...+++. ..+++.||+++..++ .+++++. . .+.+.+.++.+++++++++.
T Consensus 218 ~~~~~~~~~~~~~~------------------~~~~~~gt~~~~~~~al~~al~~~--~-~~~~~~~~~~~~l~~~l~~~ 276 (353)
T TIGR03235 218 PKAPLKPIMFGGGQ------------------ERGLRPGTLPVHLIVGMGEAAEIA--R-RNAQAWEVKLRAMRNQLRDA 276 (353)
T ss_pred cccccCceeeCCCC------------------cCccccCCCChHHHHHHHHHHHHH--H-hhHHHHHHHHHHHHHHHHHH
Confidence 11224454444432 356778898776654 4455543 2 47889999999999999999
Q ss_pred hCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh---hhhhh
Q 038499 395 LLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP---YGHHL 471 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p---~~~~l 471 (609)
|++ +|++++++......++++|.+.. .+..++.+.|. . +|.+++|..|+.. ..+.+
T Consensus 277 l~~-~g~~~~~~~~~~~~~i~~~~~~~------------------~~~~~v~~~L~-~-~i~v~~g~~~~~~~~~~~~~l 335 (353)
T TIGR03235 277 LQT-LGVKLNGDPAETIPHILNFSIDG------------------VNSEALIVNLR-A-DAAVSTGSACSSSKYEPSHVL 335 (353)
T ss_pred hcc-CCeEEeCCcccccCCEEEEEeCC------------------cCHHHHHHHHh-C-CeEEEchhhcCCCCCCCCHHH
Confidence 988 79999876433345577776543 46788999994 3 8999999999743 12445
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEec
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISF 502 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~ 502 (609)
..++.+..+. .+.+|+|+
T Consensus 336 ~~~g~~~~~~-------------~~~~r~s~ 353 (353)
T TIGR03235 336 QAMGLDTDRA-------------RGAIRFSW 353 (353)
T ss_pred HHcCCCHHHh-------------CccEEEeC
Confidence 5555433221 48899986
|
This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase. |
| >PLN02409 serine--glyoxylate aminotransaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-33 Score=299.93 Aligned_cols=357 Identities=14% Similarity=0.034 Sum_probs=264.4
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEV 159 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (609)
|+...+-...++.|.+++.+.+. .| .+....++++++++.+++++|++.++.+++++ ++++++..++..
T Consensus 11 ~l~~pGP~~~~~~V~~a~~~~~~-----~~-----~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~-~gt~a~~~a~~~ 79 (401)
T PLN02409 11 HLFVPGPVNIPERVLRAMNRPNE-----DH-----RSPAFPALTKELLEDVKYIFKTKSGTPFIFPT-TGTGAWESALTN 79 (401)
T ss_pred eeccCCCCCCCHHHHHHhcCCCC-----CC-----CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeC-CcHHHHHHHHHh
Confidence 55555555566777777644321 12 24466788999999999999998655778885 446677766654
Q ss_pred hcccchhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEE
Q 038499 160 MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
+ +++|| .|++..+.|++.. ..++..|++++.++.+.++.+|+++|+++++.+. .++++++
T Consensus 80 ~---------------~~~Gd--~Vlv~~~~~~~~~~~~~~~~~g~~v~~v~~~~~~~~~~~~l~~~l~~~~-~~~~k~v 141 (401)
T PLN02409 80 T---------------LSPGD--KVVSFRIGQFSLLWIDQMQRLNFDVDVVESPWGQGADLDILKSKLRQDT-NHKIKAV 141 (401)
T ss_pred c---------------CCCCC--EEEEeCCCchhHHHHHHHHHcCCceEEEECCCCCCCCHHHHHHHHhhCc-CCCccEE
Confidence 3 57899 5888888898764 3345679999999988766689999999998410 0278999
Q ss_pred EEecccCccccccCHHHHHHH--HHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 238 SFSACSNVTGIYSDTRSIARL--LHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~l--a~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
++++++|+||.+.|+++|+++ ||++|+++++|++++.+..++++..+ ++|++++|+|||++||.|+|++++++++
T Consensus 142 ~~~~~~~~tG~~~~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~id~~~~---~~D~~~~s~~K~l~~P~G~G~l~~~~~~ 218 (401)
T PLN02409 142 CVVHNETSTGVTNDLAGVRKLLDCAQHPALLLVDGVSSIGALDFRMDEW---GVDVALTGSQKALSLPTGLGIVCASPKA 218 (401)
T ss_pred EEEeecccccccCCHHHHHHHHhhhccCcEEEEEcccccCCcccccccc---CccEEEEcCccccCcCCCcceeEECHHH
Confidence 999999999999999999999 99999999999999999999998876 8999999999999999999999999988
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccc-cccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE-RESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERAL 392 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~-r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~ 392 (609)
++.+.+...... +.+ |. .+....+. ....+||++..+. .++++++ ...|.+.+.++.++++++++
T Consensus 219 --~~~~~~~~~~~~---~~~-~~----~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~--~~~G~e~i~~~~~~l~~~l~ 286 (401)
T PLN02409 219 --LEASKTAKSPRV---FFD-WA----DYLKFYKLGTYWPYTPSIQLLYGLRAALDLI--FEEGLENVIARHARLGEATR 286 (401)
T ss_pred --HHHHhcCCCCCe---ecC-HH----HHHHHHhcCCCCCCCccHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHH
Confidence 344433211100 000 00 00000011 1224688775544 5556655 56799999999999999999
Q ss_pred HHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhc
Q 038499 393 ERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLL 472 (609)
Q Consensus 393 ~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll 472 (609)
+.|+++ |++++++....+.+.+++...+.+ ++..++.+.|.+++||.+.+|....
T Consensus 287 ~~L~~~-g~~~~~~~~~~~s~~v~~~~~p~~----------------~~~~~l~~~l~~~~~i~i~~G~~~~-------- 341 (401)
T PLN02409 287 LAVEAW-GLKLCTKKPEWRSDTVTAVVVPEG----------------IDSAEIVKNAWKKYNLSLGLGLNKV-------- 341 (401)
T ss_pred HHHHHc-CCeeccCChhhcccceEEEeCCCC----------------CCHHHHHHHHHHhCCEEEEcCCCcc--------
Confidence 999887 899987643456655554433302 4677888888888999999774321
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 473 DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 473 ~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
+.+.+||+...|++.+|+..++++|+.++....
T Consensus 342 ---------------------~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~~~g 374 (401)
T PLN02409 342 ---------------------AGKVFRIGHLGNVNELQLLGALAGVEMVLKDVG 374 (401)
T ss_pred ---------------------cCCEEEEcCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 357899999989999999999999999887643
|
|
| >cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=292.53 Aligned_cols=342 Identities=18% Similarity=0.129 Sum_probs=253.7
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
.+.|+.|.+++.+.+. +..+....+..+++++.+++++|+++++.++++++| +++++.++..+
T Consensus 8 ~~~~~~v~~a~~~~~~----------~~~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~-t~al~~~~~~~------ 70 (356)
T cd06451 8 SNVPPRVLKAMNRPML----------GHRSPEFLALMDEILEGLRYVFQTENGLTFLLSGSG-TGAMEAALSNL------ 70 (356)
T ss_pred cCCCHHHHHHhCCCcc----------CCCCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCc-HHHHHHHHHHh------
Confidence 4567778787754321 112334567789999999999999655467888544 55788777765
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccch--HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSN--LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
+++|+ .|++....|++. ...++..|++++.++.++++.+|++++++++++ .+++++++++++|
T Consensus 71 ---------~~~g~--~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~i~~----~~~~~v~i~~~~~ 135 (356)
T cd06451 71 ---------LEPGD--KVLVGVNGVFGDRWADMAERYGADVDVVEKPWGEAVSPEEIAEALEQ----HDIKAVTLTHNET 135 (356)
T ss_pred ---------CCCCC--EEEEecCCchhHHHHHHHHHhCCCeEEeecCCCCCCCHHHHHHHHhc----cCCCEEEEeccCC
Confidence 36788 688877788774 345677899999999988788999999999983 3789999999999
Q ss_pred ccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCC-
Q 038499 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPP- 323 (609)
Q Consensus 245 ~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p- 323 (609)
+||.+.|+++|.++||++|+++++|++|+.|..++++... ++|+++.|+|||+++|.|+|++++++++ ++.+.+
T Consensus 136 ~~G~~~~~~~i~~~a~~~~~~li~D~~~~~g~~~~~~~~~---~~d~~~~s~~K~l~~p~g~G~l~~~~~~--~~~~~~~ 210 (356)
T cd06451 136 STGVLNPLEGIGALAKKHDALLIVDAVSSLGGEPFRMDEW---GVDVAYTGSQKALGAPPGLGPIAFSERA--LERIKKK 210 (356)
T ss_pred CcccccCHHHHHHHHHhcCCEEEEeeehhccCcccccccc---CccEEEecCchhccCCCCcceeEECHHH--HHHHHhc
Confidence 9999999999999999999999999999988877777654 7899999999999999999999999887 333321
Q ss_pred -CccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc
Q 038499 324 -STCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN 400 (609)
Q Consensus 324 -~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~ 400 (609)
...++ +.. .. ....+.. ..+...+|+++.+.. .+++.++ ...+.+.+.++.+++++++.+.|.++ +
T Consensus 211 ~~~~~~----~~~-~~-~~~~~~~--~~~~~~~t~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~-g 279 (356)
T cd06451 211 TKPKGF----YFD-LL-LLLKYWG--EGYSYPHTPPVNLLYALREALDLI--LEEGLENRWARHRRLAKALREGLEAL-G 279 (356)
T ss_pred CCCCce----eec-HH-HHHhhhc--ccCCCCCCChHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-C
Confidence 11111 000 00 0000110 122556777776543 4555554 34578889999999999999999887 8
Q ss_pred eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHH
Q 038499 401 IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSY 480 (609)
Q Consensus 401 i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~ 480 (609)
+++.++. ..+.+++.+...+ .. .+...+++.|.+++||.+++|..|.
T Consensus 280 ~~~~~~~-~~~~~~~~~~~~~-~~---------------~~~~~~~~~L~~~~gI~~~~g~~~~---------------- 326 (356)
T cd06451 280 LKLLAKP-ELRSPTVTAVLVP-EG---------------VDGDEVVRRLMKRYNIEIAGGLGPT---------------- 326 (356)
T ss_pred CeeccCc-ccCCCceEEEECC-CC---------------CCHHHHHHHHHHhCCEEEecccccc----------------
Confidence 8887653 2345666555444 11 4678899999776699999776432
Q ss_pred HHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 481 QIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 481 ~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.++++|+|++.++|++|+++++++|+.++
T Consensus 327 -------------~~~~iRis~~~~~~~e~v~~~~~~l~~~~ 355 (356)
T cd06451 327 -------------AGKVFRIGHMGEATREDVLGVLSALEEAL 355 (356)
T ss_pred -------------cCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 24799999999999999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway. |
| >PRK03080 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-32 Score=290.59 Aligned_cols=355 Identities=12% Similarity=0.050 Sum_probs=258.8
Q ss_pred CceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 76 RRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 76 ~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
+..+||+.+.+.+.+..|.+++.+.+. ++.|. +..+.+.++++|+.+++++|+++.++|+|+.+++|.+++.
T Consensus 11 ~~~~~f~~Gp~~~~~~~v~~a~~~~~~---~~~hr-----~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~ 82 (378)
T PRK03080 11 PADPRFSSGPCKKRPGWQLEALADALL---GRSHR-----QKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEM 82 (378)
T ss_pred CCCCCcCCCCcCCChHHHHHHHHhhhc---ccCcC-----CHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHH
Confidence 347799999988888879999876543 33343 3467889999999999999986544788875466778998
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-H-HHcCc-eEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-W-RQSLA-EVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~-~~~G~-~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
++..+ +++++ ..|++ ..+|++.... + +..|+ +++.++.++++.+|+++ ++
T Consensus 83 ~~~~l---------------~~~~~-~~vi~-~g~f~~~~~~~~~~~~g~~~v~~~~~~~g~~~d~~~----i~------ 135 (378)
T PRK03080 83 ALWSL---------------LGARR-VDHLA-WESFGSKWATDVVKQLKLEDPRVLEADYGSLPDLSA----VD------ 135 (378)
T ss_pred HHHhc---------------CCCCc-ceEEE-eCHHHHHHHHHHHhhcCCCCceEeccCCCCCCCHhh----cC------
Confidence 88765 34323 14444 5788887665 3 45788 99999888777788776 33
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
.+++|+++|++|.||.+.|+++|++ |+||+++++|++|++|+.++|+.. +|++++|+|||++||.|+|+++++
T Consensus 136 ~~~~V~~~h~~t~tG~~~pi~~I~~--~~~g~~~vVDa~qs~G~~pidv~~-----iD~~~~s~~K~l~~P~G~g~l~v~ 208 (378)
T PRK03080 136 FDRDVVFTWNGTTTGVRVPVARWIG--ADREGLTICDATSAAFALPLDWSK-----LDVYTFSWQKVLGGEGGHGMAILS 208 (378)
T ss_pred CCCCEEEEecCCccceeccchhhcc--ccCCCeEEEecccccccCCCCHHH-----CcEEEEehhhhCCCCCceEEEEEC
Confidence 2567899999999999999999999 889999999999999999999974 599999999999999999999999
Q ss_pred chhhccCCCCCCccCCCceEeeccccccccccccccccccc---CCChhHHHHH--HHHHHHHHHHhc-CHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES---GGTPQVIQMI--RAALAFWVKEYI-GHEVIKKQEET 386 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~---~gtp~i~~~~--~aal~~~~~~~~-g~~~i~~~~~~ 386 (609)
++. ++.+.|...|+....+.+ ........+.+++ .+||++..+. .+++++. ... |.+.+.+|+++
T Consensus 209 ~~~--~~~~~p~~~~~~~~~~~~-----~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l--~~~gG~e~i~~r~~~ 279 (378)
T PRK03080 209 PRA--VERLESYTPARPIPKFFR-----LTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWA--NSIGGLDALIARTAA 279 (378)
T ss_pred HHH--HHhhhcccCCCCCchhhe-----eccchHHhhhhhcCCcccCchHHHHHHHHHHHHHH--HHcCCHHHHHHHHHH
Confidence 998 666767655543211110 0000001122333 3457766653 4566665 455 89999999999
Q ss_pred HHHHHHHHhCCCCceEEeCCCCCCCc-ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 387 YIERALERLLPNQNIKILGNTSTKRQ-AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 387 l~~~~~~~L~~~p~i~v~~~~~~~r~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
+.+++++.|+++++++++......+. .+++|.+.+ .. ...+. .+...|.++ ||.++.|..|.
T Consensus 280 l~~~l~~~l~~~~~~~~~~~~~~~~s~~i~~~~~~~-~~-------------~~~~~-~~~~~l~~~-~i~v~~g~~~~- 342 (378)
T PRK03080 280 NASVLYDWAEKTPWATPLVADPATRSNTSVTLDFVD-AQ-------------AAVDA-AAVAKLLRE-NGAVDIEPYRD- 342 (378)
T ss_pred HHHHHHHHHHhCCCcccccCCccccCccEEEEEcCC-ch-------------HHHHH-HHHHHHHHc-CCeeccccccC-
Confidence 99999999999987888754223344 477776542 00 00123 355555554 88888664331
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
..+.+|+|+++|+|++|+++++++|+++++...
T Consensus 343 ----------------------------~~~~vRis~~~~~t~~di~~l~~al~~~~~~~~ 375 (378)
T PRK03080 343 ----------------------------APNGLRIWCGPTVEPADVEALTPWLDWAFERLK 375 (378)
T ss_pred ----------------------------CCCcEEEecCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 147899999999999999999999999876543
|
|
| >TIGR01788 Glu-decarb-GAD glutamate decarboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-30 Score=279.33 Aligned_cols=369 Identities=14% Similarity=0.061 Sum_probs=255.7
Q ss_pred EEecCCC--------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEE--eCC
Q 038499 79 TYADHTA--------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE-DAMIF--CGS 147 (609)
Q Consensus 79 vyld~~a--------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~-~~vif--t~s 147 (609)
+|+|+++ +++..+.+.+.+...+...++|++.. +.. +++.+++++++++++|+++. +++++ |++
T Consensus 35 iyld~~a~~~~~~~~tt~~~p~~~~~~~~~l~~~~~np~s~----~~~-~~le~~~~~~la~llg~~~~~~~~~g~~TsG 109 (431)
T TIGR01788 35 LSLDGNPRLNLATFVTTWMEPEARKLMDETINKNMIDKDEY----PQT-AEIENRCVNMLADLWHAPAKDAEAVGTSTIG 109 (431)
T ss_pred hhhcCCcceeeeeeeCCCCCHHHHHHHHHHHhcCCCCcccC----ccH-HHHHHHHHHHHHHHhCCCCCCCCCeEEEech
Confidence 3666666 67777778898888887666777652 333 48999999999999999832 25655 655
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC-CCCCHHHHHHHHh
Q 038499 148 GTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD-GLLDIEALRSKLE 226 (609)
Q Consensus 148 Gttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-g~ld~e~L~~al~ 226 (609)
||.+++..+..+.. .++.+....-....+++|++++.+|+|....++..|++++.|+++++ +.+|+++|+++|+
T Consensus 110 gTEAn~~al~~ar~-----~~~~~~~~~g~~~~~~~ii~s~~~H~sv~ka~~~lg~~v~~i~~d~~~~~vd~~~L~~~i~ 184 (431)
T TIGR01788 110 SSEAIMLGGLAMKW-----RWRKRMEAAGKPTDKPNLVMGSNVQVCWEKFARYFDVELREVPMDPGRYVIDPEQVVEAVD 184 (431)
T ss_pred HHHHHHHHHHHHHH-----HHHHHHHhcCCCCCCcEEEEcCcchHHHHHHHHHcCceeEEEecCCCceeeCHHHHHHHHh
Confidence 55544433322211 00011000000112348999999999999999989999999999875 5899999999998
Q ss_pred hhccCCCceEEEEecccCccccccCHHHHHHHHHHh------CCeEEEeccccCCc-------ccccCCCCCCCCccEEE
Q 038499 227 LYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY------GGFACFDFAASGPY-------VEIDVRSGQTDGYDAIF 293 (609)
Q Consensus 227 ~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~------g~~vivD~A~~~~~-------~~id~~~~~~~~~D~v~ 293 (609)
++|.+|++++++|.||.+.|+++|+++|+++ |+++|+|+|++++. .+.++. ..++|.++
T Consensus 185 -----~~t~lV~~t~g~t~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~---~~~~DSis 256 (431)
T TIGR01788 185 -----ENTIGVVCILGTTYTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFR---LPRVKSIN 256 (431)
T ss_pred -----hCCeEEEEEeCCCCCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcC---CCCceEEE
Confidence 5799999999999999999999999999999 99999999999544 344443 24789999
Q ss_pred EcCCCCCCCCCCcEEEEEechhhccCCC--CCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHH
Q 038499 294 LSTHKFLGGPGSPGILLMTKALYQLGSF--PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWV 371 (609)
Q Consensus 294 ~S~hK~lggp~g~G~L~~~~~~~~l~~~--~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~ 371 (609)
+|+|||+.||.|+|+|++++.......+ .+.+.++.... ...+.+.+.. ..+..-+.+..
T Consensus 257 ~s~HK~~~~P~g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~-----------------~t~~~sR~g~-~al~~w~~l~~ 318 (431)
T TIGR01788 257 VSGHKYGLVYPGVGWVIWRDEEALPEELIFHVNYLGGDEPT-----------------FTLNFSRPAN-QVIAQYYNFLR 318 (431)
T ss_pred ECchhccCCCCCcEEEEEeChHHcchhheecccccCCCCCC-----------------cceecCchHH-HHHHHHHHHHH
Confidence 9999998789999999998763101111 11122222100 0011111111 11111111111
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 038499 372 KEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLND 451 (609)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 451 (609)
....|++.+.++..++++++.++|+++|+++++++. +++++++|.+.+ .. +..++..++.+.|.+
T Consensus 319 lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~--~~~~iV~Fr~~~-~~------------~~~~~~~~l~~~L~~ 383 (431)
T TIGR01788 319 LGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDG--SGIPLVAFKLKD-DA------------DPGYTLYDLSHRLRE 383 (431)
T ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCC--CCceEEEEEeCC-CC------------CCCcCHHHHHHHHHH
Confidence 134688999999999999999999999999999762 478999999875 21 112567789999976
Q ss_pred hcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 452 LFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 452 ~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.|+.+.. |..|- .+. ..-++|+++....+++.++.+++.|+.++.+.
T Consensus 384 -~G~~~~~---~~~p~--~~~---------------------~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (431)
T TIGR01788 384 -RGWIVPA---YTLPK--NAE---------------------DIVVMRIVVREGFSRDLAELLIEDIEAALAYL 430 (431)
T ss_pred -CCCcccC---CCCCC--ccC---------------------CeEEEEEEecCCCCHHHHHHHHHHHHHHHHhh
Confidence 5886531 11110 010 12568999988899999999999999988764
|
This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA). |
| >TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-31 Score=278.21 Aligned_cols=348 Identities=13% Similarity=0.040 Sum_probs=247.1
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccch
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE-DAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
+|.|..+.+++.+.+...+. | .+....+.++++|+.+++++|++++ ++|++|+ |++.+++.++..+
T Consensus 8 ~pgp~~~~~~v~~~~~~~~~--~-----~~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~-~~t~al~~~~~~l----- 74 (363)
T TIGR02326 8 TPGPLTTSRTVKEAMLFDWC--T-----WDSDYNIVVEQIRQQLLALATAEEGYTSVLLQG-SGTFAVEAVIGSA----- 74 (363)
T ss_pred cCCCCCCCHHHHHHhCCCCC--C-----CChHHHHHHHHHHHHHHHHhCCCCCceEEEEcC-CCHHHHHHHHHhc-----
Confidence 56666666667666654332 2 1235677889999999999999764 3688985 5555788877665
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
+.++|. +|++.+.+|+.. ...++..|++++.++.++++.+|++++++++++. .+++++.+++++|
T Consensus 75 ----------~~~~~~-vlv~~~~~~~~~~~~~a~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~~ 140 (363)
T TIGR02326 75 ----------VPKDGK-LLVVINGAYGARIVQIAEYLGIPHHVVDTGEVEPPDVVEVEAILAAD---PAITHIALVHCET 140 (363)
T ss_pred ----------CCCCCe-EEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhhC---CCccEEEEEeecC
Confidence 256664 566667777664 3445778999999999888889999999999742 3567899999999
Q ss_pred ccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCC
Q 038499 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPS 324 (609)
Q Consensus 245 ~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~ 324 (609)
+||.+.|+++|+++||+||+++++|++++.+..++++..+ ++|++++|+|||++||.|+|+++++++. +..+.+.
T Consensus 141 ~tG~~~~i~~I~~l~~~~g~~livD~~~~~g~~~~~~~~~---~~D~~~~s~~K~l~~p~G~G~l~~~~~~--~~~~~~~ 215 (363)
T TIGR02326 141 TTGILNPIEAVAKLAHRHGKVTIVDAMSSFGGIPIDIAEL---HIDYLISSANKCIQGVPGFGFVIARQAE--LAACKGN 215 (363)
T ss_pred CccccCcHHHHHHHHHHcCCEEEEEccccccCcccchhhc---CccEEEecCccccccCCcceEEEECHHH--HHHhhcC
Confidence 9999999999999999999999999999999999998876 7899999999999989999999999987 3333221
Q ss_pred ccCCCceEeecccccccc-cccc--cccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce
Q 038499 325 TCGGGTVNYVNGFNEKDT-LYLE--DIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI 401 (609)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~-~~~~--~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i 401 (609)
..+ .+.+ .... .+.. ....+++..++.+.++ .+++..+. +..|++.+.++.+++++++++.|+++ |+
T Consensus 216 ~~~----~~~~---~~~~~~~~~~~~~~~~ft~~~~~~~al-~~al~~l~-~~g~~~~~~~~~~~~~~~l~~~L~~~-g~ 285 (363)
T TIGR02326 216 ARS----LSLD---LYDQWRCMEDNHGKWRFTSPTHVVHAF-AQALLELE-KEGGVAARHQRYQQNQKTLVAGMRAL-GF 285 (363)
T ss_pred CCc----eeec---HHHHHHHHhccCCCCCCCCcHHHHHHH-HHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 111 0000 0000 0000 0012222222232222 34444432 33468889999999999999999887 78
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHH
Q 038499 402 KILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQ 481 (609)
Q Consensus 402 ~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~ 481 (609)
+++.+. ..+.+++.+...+ .. ...+...+.+.|.+ .||.+++|..+.
T Consensus 286 ~~~~~~-~~~~~~~~~~~~~-~~-------------~~~~~~~v~~~L~~-~gi~v~~g~~~~----------------- 332 (363)
T TIGR02326 286 EPLLDD-EIQSPIITSFYSP-ED-------------PDYRFADFYQRLKE-QGFVIYPGKVSQ----------------- 332 (363)
T ss_pred eeccCc-ccCCceEEEEECC-CC-------------CCCCHHHHHHHHHH-CCEEEECCcCCC-----------------
Confidence 877553 2356665444444 10 01345678888865 599998764321
Q ss_pred HHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 482 IRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 482 ~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
++++||+++.+++.+|+++++++|+.++
T Consensus 333 -------------~~~iRi~~~~~~~~edv~~~l~~l~~~l 360 (363)
T TIGR02326 333 -------------VDCFRIGNIGEVDAADITRLLTAIGKAM 360 (363)
T ss_pred -------------CCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence 3689999877899999999999998875
|
Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli. |
| >PTZ00094 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-31 Score=288.77 Aligned_cols=362 Identities=15% Similarity=0.157 Sum_probs=263.1
Q ss_pred CCChHHHHHHHHHhhcCCc--cCCCCCCchhhHHHHHHHHH-HHHHHHHHhCCCCCCcEEEe---CChHHHHHHHHHHHh
Q 038499 87 GRSLRYIENYIINNVLPFY--GNTHTCDSYVGQHTTNMVHE-ASNYIKKCLGGGQEDAMIFC---GSGTTAAIKRLQEVM 160 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~--~n~~~~~~~~~~~~~~~~~e-~r~~ia~~~g~~~~~~vift---~sGttaal~~l~~~l 160 (609)
..+++.|.+++...+...| +||++. +..|....+.+++ +|+.+++++|++++ +++++ .+|+. +...++..+
T Consensus 44 n~~s~~v~~~~~~~l~~~y~~g~p~s~-~~~g~~~~~~iE~~ar~~~a~lf~a~~~-~~~~~~~~~sgt~-an~~v~~al 120 (452)
T PTZ00094 44 NFTSRAVLECLGSCFTNKYAEGLPGNR-YYGGNEVVDKIENLCQKRALEAFGLDPE-EWGVNVQPYSGSP-ANFAVYTAL 120 (452)
T ss_pred ccCCHHHHHHhcchhhccccCCCCCcc-ccccchHHHHHHHHHHHHHHHHhCCCcc-cceeecCCCchHH-HHHHHHHHh
Confidence 4677789999988888888 888875 5677777777774 89999999999876 66665 35554 455545544
Q ss_pred cccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc----------CceEEEEecCCCCCCCHHHHHHHHhhhcc
Q 038499 161 GIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS----------LAEVVEIGLDDDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~----------G~~vv~v~~~~~g~ld~e~L~~al~~~~~ 230 (609)
+++|| .|++++.+|.++...|... +.++..++++.+|.+|+++|++++++
T Consensus 121 ---------------~~~gd--~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~~~L~~~l~~--- 180 (452)
T PTZ00094 121 ---------------LQPHD--RIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDYDKLEELAKA--- 180 (452)
T ss_pred ---------------cCCCC--EEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCHHHHHHHHHH---
Confidence 37888 7999999999988776421 13445566777799999999999974
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~ 310 (609)
.+++++++. ++.+|...|+++|.++||++|+++++|++|++|..+.++.+....++|++++|+|||++||.| |+++
T Consensus 181 -~~~~lvi~~--~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~G-g~l~ 256 (452)
T PTZ00094 181 -FRPKLIIAG--ASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPRS-GLIF 256 (452)
T ss_pred -hCCCEEEEe--CCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCCc-eEEE
Confidence 367776654 346999999999999999999999999999999998887654335799999999999999998 8888
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (609)
++++. ++.+.+.. .. ..+ . .+ .|+++...++..+.++......+.+.+.++..+++++
T Consensus 257 ~~~~~--~~~l~~~~-~~-------------~~~----p-~~-~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~ 314 (452)
T PTZ00094 257 YRKKV--KPDIENKI-NE-------------AVF----P-GL-QGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKA 314 (452)
T ss_pred Eeccc--chHHHHhh-cc-------------ccC----C-CC-CCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHH
Confidence 88765 22111100 00 000 0 01 3555555544433333333445778889999999999
Q ss_pred HHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEe-ccCcccCChhhh
Q 038499 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA-RGGCACAGPYGH 469 (609)
Q Consensus 391 ~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v-~~G~~ca~p~~~ 469 (609)
+.+.|++. |+++..+....+..++.|...+ ++...+...| +.+||.+ +.|..|+.+ .+
T Consensus 315 l~~~L~~~-g~~v~~~~~~~~~~~v~~~~~~------------------~~~~~~~~~L-~~~gI~vs~~~~p~~~~-~~ 373 (452)
T PTZ00094 315 LAAALEKR-GYDLVTGGTDNHLVLVDLRPFG------------------ITGSKMEKLL-DAVNISVNKNTIPGDKS-AL 373 (452)
T ss_pred HHHHHHhC-CcEEecCCCCCceEeecCCcCC------------------CCHHHHHHHH-HHCCcEEecccCCCCCc-CC
Confidence 99999876 8888865322343344443322 4677888888 5579999 566555521 11
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC----HHHHHHHHHHHHHHHHhcccccCCCcccccCCceeec
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS----NEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTWCFM 544 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t----~eeid~ll~al~~v~~~~~~~~p~y~~~~~~~~w~~~ 544 (609)
+++++|+|+++++| ++|+++++++|.+++.....+.+.| ++.+++|.+.
T Consensus 374 ------------------------~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~~~~~~~~~~--~~~~~~~~~~ 426 (452)
T PTZ00094 374 ------------------------NPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVKLAQEIQKQV--GKKLVDFKKA 426 (452)
T ss_pred ------------------------CCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHHHHhhhhhhc--ccchhhhhhh
Confidence 36899999999987 9999999999999999988888788 7777776543
|
|
| >PRK02769 histidine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-30 Score=274.17 Aligned_cols=336 Identities=16% Similarity=0.141 Sum_probs=247.6
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQED-AMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~-~vift~sGttaal~~l~ 157 (609)
.|+-|..+...+....+.+.......++|+... +..+..+.++.+++++++++++|+++++ ..+||++||.+++..+.
T Consensus 24 ~~~g~p~~~~~~~~~~~~~~~~~~~n~gnp~~~-~~~g~~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~ 102 (380)
T PRK02769 24 FNVGYPEAADFDYSALKRFFSFSINNCGDPYSK-SNYPLNSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCY 102 (380)
T ss_pred cccCCCchhhcCHHHHHHHHHhhhccCCCcccc-CCCCCChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHH
Confidence 344444444443344555556665567888764 4556678899999999999999998653 24888555555443332
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEE
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
.+.. +.+++ +|++++.+|+|+..+++..|.+++.|+.+++|.+|+++|+++|++. ..+|.+|
T Consensus 103 ~ar~--------------~~~~~--~ii~s~~~H~Sv~ka~~~lg~~~~~V~~~~~g~id~~~L~~~i~~~--~~~t~lv 164 (380)
T PRK02769 103 LARE--------------LFPDG--TLYYSKDTHYSVSKIARLLRIKSRVITSLPNGEIDYDDLISKIKEN--KNQPPII 164 (380)
T ss_pred HHHH--------------hCCCc--EEEeCCCceehHHHHHHHcCCCCceeccCCCCcCcHHHHHHHHHhC--CCCcEEE
Confidence 2211 34565 7999999999999999999999999999889999999999999852 2358999
Q ss_pred EEecccCccccccCHHHHHHHHHHhC---CeEEEeccccCCccc-------ccCCCCCCCCccEEEEcCCCCCCCCCCcE
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQYG---GFACFDFAASGPYVE-------IDVRSGQTDGYDAIFLSTHKFLGGPGSPG 307 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~g---~~vivD~A~~~~~~~-------id~~~~~~~~~D~v~~S~hK~lggp~g~G 307 (609)
++++++|+||.+.|+++|+++|++|| +++|+|+|++++..+ +|+.. ++|++++|+|||+|+|.|+|
T Consensus 165 v~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~d~~~----~vDsis~s~HK~~~~P~g~G 240 (380)
T PRK02769 165 FANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPFSFAD----GIDSIAISGHKFIGSPMPCG 240 (380)
T ss_pred EEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccCCccC----CCCEEEECCcccCCCCCCcE
Confidence 99999999999999999999999998 699999999998775 44432 79999999999999999999
Q ss_pred EEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHH
Q 038499 308 ILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 308 ~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~ 385 (609)
+++++++. +..+.+. ..|.. . ......||++....+ .+++.++ ...|++++.+++.
T Consensus 241 ~l~~r~~~--~~~~~~~------~~yl~-----------~-~d~t~~GSR~g~~~l~lw~aL~~l--g~~G~~~~~~~~~ 298 (380)
T PRK02769 241 IVLAKKKY--VERISVD------VDYIG-----------S-RDQTISGSRNGHTALLLWAAIRSL--GSKGLRQRVQHCL 298 (380)
T ss_pred EEEEehhh--hhhcccC------ccccC-----------C-CCCCccCCCCcHHHHHHHHHHHHH--CHHHHHHHHHHHH
Confidence 99999987 4444321 11111 1 111236777654433 4445544 5668999999999
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
++++++.++|++. +++++.+ +.+.+++|.... ..+. + |..+..
T Consensus 299 ~la~~l~~~L~~~-g~~~~~~---p~~~~v~f~~~~---------------------~~~~----~--~w~l~~------ 341 (380)
T PRK02769 299 DMAQYAVDRLQAN-GIPAWRN---PNSITVVFPCPS---------------------ERIW----K--KWHLAT------ 341 (380)
T ss_pred HHHHHHHHHHHhC-CCEEEcC---CCceEEEEcCCC---------------------HHHH----h--CeeEcc------
Confidence 9999999999875 8888876 456677764332 1221 2 444431
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++|+.+....+.+.+|.+++.|......
T Consensus 342 ----------------------------~~~~~hi~~~~~~~~~~~~~f~~dl~~~~~~ 372 (380)
T PRK02769 342 ----------------------------SGNQAHIITMPHHNKQQIDSLIDELIFDLKN 372 (380)
T ss_pred ----------------------------cCCEEEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 1368999998889999999999999887763
|
|
| >cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=284.48 Aligned_cols=337 Identities=15% Similarity=0.136 Sum_probs=239.1
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhh---HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVG---QHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~---~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
.+.|+.|.+++.+.+..+. |++.+.+..+ ..+.+.++++|+.+++++|++.+++|+|+.+++|.+++.++..+-.
T Consensus 8 ~~~p~~V~~a~~~~~~~~~-~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~- 85 (355)
T cd00611 8 AALPEEVLEQAQKELLDFN-GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLG- 85 (355)
T ss_pred CCCCHHHHHHHHHHHhhcc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCC-
Confidence 5678899999999886644 8887665555 5677999999999999999854458999955588899999887620
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCC-C-HHHHHHHHhhhccCCCceEEEEec
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLL-D-IEALRSKLELYKDAKRPILGSFSA 241 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~l-d-~e~L~~al~~~~~~~~~~lv~~s~ 241 (609)
+ .++++ +|++++++|.+. ...+..|++++.++.+++|.. + ++..+..++ +++++|+++|
T Consensus 86 -~----------~~~~~--~i~~g~~~~~~~-~~a~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~-----~~~~lV~~~h 146 (355)
T cd00611 86 -D----------KGTAD--YVVTGAWSAKAA-KEAKRYGGVVVIVAAKEEGKYTKIPDVETWDLA-----PDAAYVHYCS 146 (355)
T ss_pred -C----------CCeEE--EEECCHHHHHHH-HHHHhcCCCcEEEecccccCCCCCCCHhhcCCC-----CCCCEEEEeC
Confidence 0 13555 677777777663 344667999999988655433 4 232233344 6899999999
Q ss_pred ccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC
Q 038499 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF 321 (609)
Q Consensus 242 ~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~ 321 (609)
++|.||...+ ++++.||++++||++|++|+.++|+.++ |++++|.||++| |.|+|++++++++ +.++
T Consensus 147 ~~t~tG~~~~-----~i~~~~g~~~~VDa~qs~g~~~idv~~~-----~~~~ss~~K~lG-P~G~g~l~~~~~~--~~~~ 213 (355)
T cd00611 147 NETIHGVEFD-----EVPDTGGVPLVADMSSNILSRPIDVSKF-----GVIYAGAQKNLG-PAGVTVVIVRKDL--LGKA 213 (355)
T ss_pred CcccccEEcc-----eecccCCCeEEEEccccccCCCCCHHHh-----CEEEeecccccC-CCceEEEEECHHH--Hhhc
Confidence 9999999843 4455699999999999999999999875 567777999986 9999999999998 5555
Q ss_pred CCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhCCC
Q 038499 322 PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYI-GHEVIKKQEETYIERALERLLPN 398 (609)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~~~~~~~L~~~ 398 (609)
.|..+. . ..+..........|||++..++ .+++++. +.. |++.+.++++++++++++.|+++
T Consensus 214 ~~~~~~--~-----------~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l--~~~gg~e~i~~~~~~l~~~l~~~l~~~ 278 (355)
T cd00611 214 RKITPS--M-----------LNYKTHADNNSLYNTPPTFAIYMMGLVLKWL--KEQGGVEAMEKRNRQKAQLLYDTIDNS 278 (355)
T ss_pred ccCCCC--c-----------ccHHHHHhcCCCCCCChHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 554221 0 0011001122236899887765 4566665 566 79999999999999999999999
Q ss_pred CceEEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhc-CcEeccCcccCChhhhhhcCCCh
Q 038499 399 QNIKILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLF-GIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 399 p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~-GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
||+.........|.+ +++|.+.. . .|.+.+ +|.+|.|. |+ +.+|.
T Consensus 279 ~gl~~~~~~~~~rs~~vvsf~~~~------------------~-------~l~~~~~~~~~r~G~-~~-~~~~~------ 325 (355)
T cd00611 279 NGFYRGPVDKRARSRMNVPFRLGK------------------E-------ELEKEFLKEAEAAGM-IG-LKGHR------ 325 (355)
T ss_pred ccccccCCCHHHcCceEEEEEcCC------------------h-------hhhHHHHHHHHHCCC-cc-cCCCc------
Confidence 885211111123664 48888655 1 111112 34455554 23 22331
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
..|.+|+|+++|+|++||++++++|+++.
T Consensus 326 -----------------~~g~vR~S~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 326 -----------------SVGGIRASIYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred -----------------ccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence 14789999999999999999999999863
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine. |
| >PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-28 Score=260.39 Aligned_cols=349 Identities=14% Similarity=0.078 Sum_probs=239.3
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccch
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE-DAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
+|.|..+.+.+.+++...++ + ....+.+.++++++.+++++|++++ +.|+++++|+. ++..++..+
T Consensus 10 ~pgP~~~~~~~~~a~~~~~~--~-----~~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~-~l~~~~~~l----- 76 (368)
T PRK13479 10 TPGPLTTSRTVREAMLRDWG--S-----WDDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTF-SVEAAIGSL----- 76 (368)
T ss_pred cCCCCCCCHHHHHHhCCCCC--C-----CChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHH-HHHHHHHhc-----
Confidence 45555555556665543321 1 1123446789999999999999753 36778865555 677776655
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccch--HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEeccc
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSN--LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACS 243 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~s 243 (609)
+.+|| .|++....+++. ...++..|++++.++.++++.+|++++++++++. ++++++.+++++
T Consensus 77 ----------~~~~~--~vlv~~~~~~~~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~ 141 (368)
T PRK13479 77 ----------VPRDG--KVLVPDNGAYGARIAQIAEYLGIAHVVLDTGEDEPPDAAEVEAALAAD---PRITHVALVHCE 141 (368)
T ss_pred ----------cCCCC--eEEEEeCCchHHHHHHHHHHcCCcEEEEECCCCCCCCHHHHHHHHHhC---CCCcEEEEEccc
Confidence 25666 355544444433 2455778999999999877889999999999742 356789999999
Q ss_pred CccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCC
Q 038499 244 NVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPP 323 (609)
Q Consensus 244 n~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p 323 (609)
|+||.+.|+++|+++||++|+++++|++++.+..++++..+ ++|++++|+|||++||.|+|++++++++ ++.+.+
T Consensus 142 ~~tG~~~~~~~i~~l~~~~~~~livDa~~~~g~~~~~~~~~---~~d~~v~s~~K~l~g~~G~G~l~~~~~~--~~~~~~ 216 (368)
T PRK13479 142 TTTGILNPLDEIAAVAKRHGKRLIVDAMSSFGAIPIDIAEL---GIDALISSANKCIEGVPGFGFVIARRSE--LEACKG 216 (368)
T ss_pred CccccccCHHHHHHHHHHcCCEEEEEcccccCCcccccccc---CceEEEecCccccccCCCceEEEECHHH--HHHhhc
Confidence 99999999999999999999999999999988888888765 7899999999999889889999999987 444432
Q ss_pred CccCCCceEeecccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce
Q 038499 324 STCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI 401 (609)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i 401 (609)
..... +.+-.. ...........++ |+++..+ +.++++.+. +..+.+.+.++..++++++++.|.++ |+
T Consensus 217 ~~~~~----~~~~~~-~~~~~~~~~~~~~---t~~~~~~~~l~~al~~l~-~~~~~~~~~~~~~~~~~~l~~~L~~~-g~ 286 (368)
T PRK13479 217 NSRSL----SLDLYD-QWAYMEKTGQWRF---TPPTHVVAAFYQALLELE-EEGGVPARGARYANNQRTLVAGMRAL-GF 286 (368)
T ss_pred CCCCe----eecHHH-HHhhhcccCCCCC---CCcHHHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 21110 000000 0000000011122 4554443 244555442 33467888889999999999999887 78
Q ss_pred EEeCCCCCCCcce-EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHH
Q 038499 402 KILGNTSTKRQAI-LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSY 480 (609)
Q Consensus 402 ~v~~~~~~~r~~~-~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~ 480 (609)
+++.+. ..+.+. ++|.... . ...+...+.+.|.+ .||.+++|..+.
T Consensus 287 ~~~~~~-~~~~~~~~~~~~~~-~--------------~~~~~~~l~~~L~~-~gi~v~~g~~~~---------------- 333 (368)
T PRK13479 287 EPLLDA-EIQSPIIVTFHAPA-D--------------PAYDFKEFYERLKE-QGFVIYPGKLTQ---------------- 333 (368)
T ss_pred cccCCc-hhcCceEEEEECCC-C--------------CCcCHHHHHHHHHH-CCEEEecCCCCC----------------
Confidence 776542 224444 4444332 1 01346788888866 599998653211
Q ss_pred HHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 481 QIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 481 ~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.+++|++...+++++|+++++++|+++++..
T Consensus 334 --------------~~~iRis~~~~~t~edi~~~l~~L~~~l~~~ 364 (368)
T PRK13479 334 --------------VDTFRIGCIGDVDAADIRRLVAAIAEALYWM 364 (368)
T ss_pred --------------CCEEEEecCCCCCHHHHHHHHHHHHHHHHHc
Confidence 3689999877899999999999999988754
|
|
| >cd06450 DOPA_deC_like DOPA decarboxylase family | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=265.13 Aligned_cols=309 Identities=17% Similarity=0.137 Sum_probs=224.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCc
Q 038499 113 SYVGQHTTNMVHEASNYIKKCLGGG-QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEH 191 (609)
Q Consensus 113 ~~~~~~~~~~~~e~r~~ia~~~g~~-~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h 191 (609)
+..+....++.+++++++++++|.+ .+.+++||+ |+|.++..++.++...... +.......++++++|++++.+|
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~-ggt~a~~~al~~~~~~~~~---~~~~~~~~~~~~~~v~~~~~~h 105 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTS-GGSESNLLALLAARDRARK---RLKAGGGRGIDKLVIVCSDQAH 105 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeC-ChhHHHHHHHHHHHHHhhh---hhhcccccccCCeEEEEcCcch
Confidence 4455667888999999999999986 334789994 5555666655554210000 0000001144555899999999
Q ss_pred cchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc-CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 192 HSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD-AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~-~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
+++...++..|++++.++.++++.+|+++|++++++... ..+++++++++++|+||.+.|+++|+++|++||+++|+|+
T Consensus 106 ~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD~ 185 (345)
T cd06450 106 VSVEKAAAYLDVKVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVDA 185 (345)
T ss_pred hHHHHHHHHHhcCeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEec
Confidence 999989988899999999988889999999999974211 1268899999999999999999999999999999999999
Q ss_pred cccCCcccccCCC---CCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 271 AASGPYVEIDVRS---GQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 271 A~~~~~~~id~~~---~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
|++.+..+.+... ....++|++++|+|||+++|.|+|+++++ .
T Consensus 186 a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~--~-------------------------------- 231 (345)
T cd06450 186 AYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR--A-------------------------------- 231 (345)
T ss_pred hhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH--H--------------------------------
Confidence 9988765543221 11136899999999999999988987655 1
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCc
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
....+++.++ ...|++.+.++..++++++.+.|+++++++++.+ +..++++|...+ ..
T Consensus 232 -------------~~~~~~l~~l--~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~---~~~~iv~f~~~~-~~--- 289 (345)
T cd06450 232 -------------LKLWATLRRF--GRDGYGEHIDRIVDLAKYLAELIRADPGFELLGE---PNLSLVCFRLKP-SV--- 289 (345)
T ss_pred -------------HHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC---CceeEEEEEECC-cc---
Confidence 0112333333 3457888899999999999999999999988765 356788888764 10
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC-C
Q 038499 428 LGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY-M 506 (609)
Q Consensus 428 ~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~-~ 506 (609)
....+..++.+.|.++ |+.+.++..+. .++++|++++.+ +
T Consensus 290 ---------~~~~~~~~i~~~L~~~-g~~~~~~~~~~-----------------------------~~~~lRis~~~~~~ 330 (345)
T cd06450 290 ---------KLDELNYDLSDRLNER-GGWHVPATTLG-----------------------------GPNVLRFVVTNPLT 330 (345)
T ss_pred ---------hhhHHHHHHHHHHHhc-CCEEEEeeEEC-----------------------------CeEEEEEEecCCCC
Confidence 0013456788888664 55444322110 147899999876 5
Q ss_pred CHHHHHHHHHHHHH
Q 038499 507 SNEEFEFTLEALEF 520 (609)
Q Consensus 507 t~eeid~ll~al~~ 520 (609)
|++|+++++++|++
T Consensus 331 t~~di~~l~~~l~~ 344 (345)
T cd06450 331 TRDDADALLEDIER 344 (345)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999975
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine. |
| >PLN03032 serine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-28 Score=256.87 Aligned_cols=324 Identities=16% Similarity=0.152 Sum_probs=232.3
Q ss_pred HHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccchhhHHHH
Q 038499 93 IENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQED-AMIFCGSGTTAAIKRLQEVMGIAVPSILREK 171 (609)
Q Consensus 93 v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~ 171 (609)
+.+.+...+...++||.+. +..|..+.++.+++++++++++|+++++ ..+||++||.+++..+..+..
T Consensus 39 ~~~~~~~~~~~~~gnP~s~-~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~---------- 107 (374)
T PLN03032 39 ELSQLMKYSINNLGDPFIE-SNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGRE---------- 107 (374)
T ss_pred HHHHHHHhcccCCCCCccc-CCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHH----------
Confidence 5666777777778999885 5678889999999999999999998763 249996666666544433221
Q ss_pred HHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC
Q 038499 172 LIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD 251 (609)
Q Consensus 172 ~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d 251 (609)
..++. +|+++..+|+|+..+++..|.+++.||++++|.+|+++|+++|++.. .+|.++++++++|+||.+.|
T Consensus 108 ----~~~~~--~vi~s~~~H~Sv~kaa~~lg~~~~~V~~d~~g~id~~~L~~~i~~~~--~~~~lvv~tagtt~tG~idp 179 (374)
T PLN03032 108 ----VFPDG--ILYASRESHYSVFKAARMYRMEAVKVPTLPSGEIDYDDLERALAKNR--DKPAILNVNIGTTVKGAVDD 179 (374)
T ss_pred ----hCCCc--EEEeCCCceeHHHHHHHHcCCCCeEeeeCCCCcCcHHHHHHHHHHcC--CCCEEEEEEecCcCCccCCC
Confidence 12333 79999999999999999999999999999999999999999998421 26889999999999999999
Q ss_pred HHHHHHHHHHhC-----CeEEEeccccCCcccccCCC--CC-CCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCC
Q 038499 252 TRSIARLLHQYG-----GFACFDFAASGPYVEIDVRS--GQ-TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPP 323 (609)
Q Consensus 252 l~~I~~la~~~g-----~~vivD~A~~~~~~~id~~~--~~-~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p 323 (609)
+++|+++|++|| +|+|+|+|++++..++.... .. ..++|.+++|+|||+|.|.|+|+|+++++. +..+..
T Consensus 180 i~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~--~~~~~~ 257 (374)
T PLN03032 180 LDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKH--VKALSQ 257 (374)
T ss_pred HHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchh--hHhhcc
Confidence 999999999997 58999999998877652210 00 126899999999999889999999999877 333211
Q ss_pred CccCCCceEeecccccccccccccccccccCCChhHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce
Q 038499 324 STCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI--QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI 401 (609)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~--~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i 401 (609)
...|+....... .|+.+-. ..+.+.+... ...|+..+.++..++++++.++|++. ++
T Consensus 258 -----------------~~~Yl~~~d~ti-~gSR~g~~~l~~w~~l~~~--G~~g~~~~~~~~~~~a~~l~~~l~~~-~~ 316 (374)
T PLN03032 258 -----------------NVEYLNSRDATI-MGSRNGHAPLYLWYTLRRK--GYRGIKRDVQHCMRNAHYLKDRLTEA-GL 316 (374)
T ss_pred -----------------CCcccCCCCCcc-cCCCchHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 011111111111 2343211 1222333322 34567788899999999999999886 67
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHH
Q 038499 402 KILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQ 481 (609)
Q Consensus 402 ~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~ 481 (609)
+++.+ +.+.+++|.... .. .+.+ |..+..
T Consensus 317 ~~~~~---p~~~~V~f~~~~--------------------~~----~~~~--~w~l~~---------------------- 345 (374)
T PLN03032 317 TCRLN---ELSSTVVFERPM--------------------DE----AFIK--KWQLAC---------------------- 345 (374)
T ss_pred cEEEC---CCceEEEEcCCC--------------------cH----hHhh--eeeecc----------------------
Confidence 76654 244555554432 11 1212 443330
Q ss_pred HHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 482 IRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 482 ~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.++++|+.+.+..+.+.+|.|++.|+++
T Consensus 346 ------------~~~~~hi~vm~~~~~~~id~fi~dl~~~ 373 (374)
T PLN03032 346 ------------EGDIAHVVVMPNVTVEKLDEFVEELVEV 373 (374)
T ss_pred ------------cCCEEEEEECCCCCHHHHHHHHHHHhcc
Confidence 1358999998888999999999988753
|
|
| >PRK13520 L-tyrosine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.6e-28 Score=257.29 Aligned_cols=334 Identities=16% Similarity=0.098 Sum_probs=236.8
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEV 159 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (609)
+++.+.+. ..+.+.+++.+++...++++.. .. ....+.+++++++++++|.++. .++++++ +++++..++.+
T Consensus 24 ~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~la~~~g~~~~-~~~~~~g-gt~a~~~a~~~ 95 (371)
T PRK13520 24 ILSSMCTE-PHPIARKAHEMFLETNLGDPGL---FP--GTAKLEEEAVEMLGELLHLPDA-YGYITSG-GTEANIQAVRA 95 (371)
T ss_pred eeeeeecC-chHHHHHHHHHHHhcCCCCccc---Cc--cHHHHHHHHHHHHHHHhCCCCC-CeEEecC-cHHHHHHHHHH
Confidence 57776644 4555668887777654444432 12 3566778999999999998765 6788844 45555555444
Q ss_pred hcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEE
Q 038499 160 MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSF 239 (609)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~ 239 (609)
+.- . ..++++ .|+++..+|++....++..|++++.++.++++.+|+++|+++|+ ++++++++
T Consensus 96 ~~~-~----------~~~~~~--~vl~~~~~h~s~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~~~vi~ 157 (371)
T PRK13520 96 ARN-L----------AKAEKP--NIVVPESAHFSFDKAADMLGVELRRAPLDDDYRVDVKAVEDLID-----DNTIGIVG 157 (371)
T ss_pred HHh-h----------ccCCCc--eEEecCcchHHHHHHHHHcCceEEEecCCCCCcCCHHHHHHHHh-----hCCEEEEE
Confidence 310 0 012455 79999999999888888889999999998888999999999998 56877778
Q ss_pred ecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc-------ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE-------IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 240 s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~-------id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
++++|+||.+.|+++|.++||+||+++++|++|+.+..+ +++. ..++|++++|+|||.++|.++|+++++
T Consensus 158 ~~~~~~tG~~~~l~~I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~---~~~vd~~~~s~~K~~~a~~~~G~~~~~ 234 (371)
T PRK13520 158 IAGTTELGQVDPIPELSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFS---LPGVDSITIDPHKMGLAPIPAGGILFR 234 (371)
T ss_pred EcCCcCCcccCCHHHHHHHHHHcCCCEEEEecchhHHHHhhcCCCCcccc---CCCCceEEECCccccCccCCceEEEEc
Confidence 888999999999999999999999999999999865433 2222 237899999999998878778888876
Q ss_pred ch-hhccCCCC---CCccCCCceEeecccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHH
Q 038499 313 KA-LYQLGSFP---PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEET 386 (609)
Q Consensus 313 ~~-~~~l~~~~---p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~ 386 (609)
++ + ++.+. |...++. .....||++.... +.+++.+. ...|.+.+.++..+
T Consensus 235 ~~~~--~~~l~~~~~~~~~~~--------------------~~~~~gt~~~~~~~~~~~al~~l--~~~g~~~~~~~~~~ 290 (371)
T PRK13520 235 DESY--LDALAVDTPYLTSKK--------------------QATLTGTRSGAGVAATYAVMKYL--GREGYRKVVERCME 290 (371)
T ss_pred CHHH--HHhhcccCccccCCC--------------------CcceEeeccChHHHHHHHHHhhh--cHhHHHHHHHHHHH
Confidence 54 4 23321 1111110 1112345443332 23344433 34577888899999
Q ss_pred HHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh
Q 038499 387 YIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 387 l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
+++++.+.|+++ ++++..+ +..+++++.+. +..++.+.|.+ .||.++++ .
T Consensus 291 ~~~~l~~~L~~~-g~~~~~~---~~~~~v~~~~~--------------------~~~~v~~~L~~-~gi~v~~~---~-- 340 (371)
T PRK13520 291 NTRWLAEELKER-GFEPVIE---PVLNIVAFDDP--------------------NPDEVREKLRE-RGWRVSVT---R-- 340 (371)
T ss_pred HHHHHHHHHHhC-CCEEecC---CCceEEEEecC--------------------CHHHHHHHHHH-CCceeccC---C--
Confidence 999999999987 8874333 23455555432 25688888866 49998742 1
Q ss_pred hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 467 ~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++++|+|+++++|++|+++++++|+.+++
T Consensus 341 ---------------------------~~~~iRis~~~~~t~edi~~~~~~l~~~~~ 370 (371)
T PRK13520 341 ---------------------------CPEALRIVCMPHVTREHIENFLEDLKEVKK 370 (371)
T ss_pred ---------------------------CCCEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 146899999999999999999999998764
|
|
| >TIGR01364 serC_1 phosphoserine aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-28 Score=259.05 Aligned_cols=335 Identities=14% Similarity=0.131 Sum_probs=236.5
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhH---HHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQ---HTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~---~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
..|..|++++.+++..+. |.+.+.+..+. .+.++++++++.++++++.+.+.+|+|+.+++|.++++++..+
T Consensus 2 ~~p~~v~~~~~~~~~~~~-~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl---- 76 (349)
T TIGR01364 2 ALPEEVLEQAQKELLNFN-GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNL---- 76 (349)
T ss_pred CCCHHHHHHHHHHHhCcc-CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc----
Confidence 468899999999887665 77776553333 4458999999999999998544478887554777899888765
Q ss_pred hhhHHHHHHhhhcCCCce-EEEECCCCccchHHHHHHcCceEEEEecCC----CCCCCHHHHHHHHhhhccCCCceEEEE
Q 038499 165 PSILREKLIKCLRDEERW-VVFVGPHEHHSNLLSWRQSLAEVVEIGLDD----DGLLDIEALRSKLELYKDAKRPILGSF 239 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~-~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~----~g~ld~e~L~~al~~~~~~~~~~lv~~ 239 (609)
+++|++. ++..+.++|.. ...++..|+ ++.+..++ ...+++++++ ++ +++++|++
T Consensus 77 -----------~~~~~~~l~i~~G~fg~r~-~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~--~~-----~~~~~v~~ 136 (349)
T TIGR01364 77 -----------LAEGKVADYIVTGAWSKKA-AKEAKKYGV-VNVVASGKEGNYTKIPDPSTWE--IS-----EDAAYVHY 136 (349)
T ss_pred -----------CCCCCeEEEEECCHHHHHH-HHHHHHhCC-cEEEeccccCCCCCCCCHHhcC--CC-----CCCCEEEE
Confidence 3566652 23334444443 345566788 77776542 2245666554 23 57899999
Q ss_pred ecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccC
Q 038499 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLG 319 (609)
Q Consensus 240 s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~ 319 (609)
+|+.|.||+..| ++++.++++++||+++++|+.++|+..+ |++++|.||++| |.|+|++++++++ ++
T Consensus 137 th~ETstGv~~~-----~l~~~~~~l~iVDavss~g~~~id~~~~-----d~~~~ssqK~lg-P~Glg~l~~s~~~--~~ 203 (349)
T TIGR01364 137 CANETIHGVEFR-----ELPDVKNAPLVADMSSNILSRPIDVSKF-----GLIYAGAQKNIG-PAGLTVVIVRKDL--LG 203 (349)
T ss_pred cCCCCcccEecc-----eecccCCCeEEEEccccccCccCCHHHc-----cEEEEecccccC-CCceEEEEECHHH--Hh
Confidence 999999999987 6677789999999999999999999864 699999999997 9999999999999 55
Q ss_pred CCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhC
Q 038499 320 SFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYI-GHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 320 ~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~~~~~~~L~ 396 (609)
++.|... .. ..|..........|||++..+. .+++++. ..+ |++.+.++++++++++++.|+
T Consensus 204 ~~~~~~~--~~-----------~~~~~~~~~~~~~~Tp~~~~i~al~~al~~l--~~~gG~e~i~~r~~~l~~~l~~~l~ 268 (349)
T TIGR01364 204 RASRITP--SM-----------LNYKIHAENDSMYNTPPTFAIYVSGLVFKWL--KEQGGVKAIEKRNQAKAQLLYDTID 268 (349)
T ss_pred hcccCCC--Cc-----------chHHHHHhcCCCCCCCcHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 5555311 00 0011001112335899987766 4555555 566 799999999999999999999
Q ss_pred CCCceEEeCCCCCCCc-ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCC
Q 038499 397 PNQNIKILGNTSTKRQ-AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD 475 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~ 475 (609)
+++|+.........+. ++++|.+.. .. + ...+.+.+.+ .||.+..| +.
T Consensus 269 ~~~gl~~~~~~~~~rs~~v~sf~~~~-~~---------------~-~~~~~~~~~~-~Gi~~~~~--------~~----- 317 (349)
T TIGR01364 269 NSNGFYRNPVDPRNRSRMNVVFTLGN-EE---------------L-EKRFLKEAEE-RGLVSLKG--------HR----- 317 (349)
T ss_pred hCCCeeccCCCHHHcCCeEEEEecCC-hh---------------H-hHHHHHHHHH-CCCcccCC--------cc-----
Confidence 9988655532112355 457777654 10 1 1334344432 46644432 11
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..+.+|+|+.+|+|.+||++++++|+++.++
T Consensus 318 ------------------~~g~vRvS~~~~nt~edid~l~~al~~~~~~ 348 (349)
T TIGR01364 318 ------------------SVGGMRASIYNAMPLEGVQALVDFMKEFQKK 348 (349)
T ss_pred ------------------ccCeeEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 1478999999999999999999999997753
|
This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266). |
| >TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-28 Score=255.58 Aligned_cols=320 Identities=16% Similarity=0.121 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc-hHH
Q 038499 119 TTNMVHEASNYIKKCLGGGQED-AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS-NLL 196 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~ 196 (609)
..+.++++++.+++++|++++. .|+++++|+. ++..++..+ +.++|+ +|++.+.+|++ ...
T Consensus 29 ~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~-~l~~~~~~~---------------~~~~~~-vi~~~~~~~~~~~~~ 91 (355)
T TIGR03301 29 FNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTF-AVEATIGSL---------------VPRDGK-LLVLINGAYGERLAK 91 (355)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHH-HHHHHHHhc---------------cCCCCe-EEEECCCchhhHHHH
Confidence 3578999999999999998753 5778866655 677777665 256664 56666666655 334
Q ss_pred HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 197 SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.++..|++++.++.++++.+|+++++++++++ ++++++++++++|+||.+.|+++|+++|++||+++++|++++.+.
T Consensus 92 ~a~~~g~~~~~i~~~~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~~~~G~~~~~~~i~~l~~~~~~~livD~~~s~g~ 168 (355)
T TIGR03301 92 ICEYLGIPHTDLNFSEYEPPDLNRIEEALAAD---PDITHVATVHHETTTGILNPLEAIAKVARSHGAVLIVDAMSSFGA 168 (355)
T ss_pred HHHHcCCceEEEecCCCCCCCHHHHHHHHHhC---CCceEEEEEecCCcccchhHHHHHHHHHHHcCCEEEEEeccccCC
Confidence 56678999999998877889999999999742 456788899999999999999999999999999999999999888
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
.++++... ++|++++|+|||++||.|+|++++++++ ++.+....... +.+ +. ....+.. ..+....|
T Consensus 169 ~~~~~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~~~--~~~~~~~~~~~----~~~-~~-~~~~~~~--~~~~~~~t 235 (355)
T TIGR03301 169 IPIDIEEL---DVDALIASANKCLEGVPGFGFVIARRDL--LEASAGNARSL----YLD-LY-DQWAYME--KTGKWRFT 235 (355)
T ss_pred cccchhhc---CccEEEecCCcccccCCceeEEEECHHH--HHHhhCCCCCc----eee-HH-HHHHHhh--hcCCCCCC
Confidence 78877765 7899999999999888889999999988 33332110000 000 00 0000000 01112345
Q ss_pred hhHHHHH--HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceE-EEEeccCCCCCcCCCCC
Q 038499 357 PQVIQMI--RAALAFWVKEYIG-HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAIL-SFNIHSSTINSSLGENT 432 (609)
Q Consensus 357 p~i~~~~--~aal~~~~~~~~g-~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~-~f~~~~~~~~~~~~~~~ 432 (609)
++..... .+++... ...| .+.+.++.+++++++.+.|+++ ++++..+.. .+.+++ ++.+.. ..
T Consensus 236 ~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~~~~~~L~~~-g~~~~~~~~-~~~~~~~~~~~~~-~~-------- 302 (355)
T TIGR03301 236 PPTHTVYAFAQALEEL--EAEGGVPARIARYRRNRELLVDGLRAL-GFQPLLPER-WQSPIIVSFLYPD-DP-------- 302 (355)
T ss_pred CcHHHHHHHHHHHHHH--HHcccHHHHHHHHHHHHHHHHHHHHHc-CCeeecCCC-CCCCcEEEEECCC-CC--------
Confidence 5544433 3444443 2334 7888888999999999999887 787765532 344444 444332 10
Q ss_pred CCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHH
Q 038499 433 KTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512 (609)
Q Consensus 433 ~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid 512 (609)
..+..++.+.|.+ .||.+++|..+. .+++||+++.+++++|++
T Consensus 303 ------~~~~~~~~~~l~~-~gi~i~~~~~~~------------------------------~~~iRis~~~~~~~~~i~ 345 (355)
T TIGR03301 303 ------DFDFDDFYQELKE-RGFVIYPGKLTL------------------------------ADTFRIGTIGEIDAADIE 345 (355)
T ss_pred ------cchHHHHHHHHHH-CCEEEECCcccc------------------------------ccEEEEecCCCCCHHHHH
Confidence 1245688888866 599998664211 268999999899999999
Q ss_pred HHHHHHHHH
Q 038499 513 FTLEALEFI 521 (609)
Q Consensus 513 ~ll~al~~v 521 (609)
+++++|+++
T Consensus 346 ~~~~~l~~~ 354 (355)
T TIGR03301 346 RLLEAIKDA 354 (355)
T ss_pred HHHHHHHhh
Confidence 999999875
|
This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different. |
| >PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=254.77 Aligned_cols=348 Identities=18% Similarity=0.175 Sum_probs=241.7
Q ss_pred CCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 85 ASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 85 a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
-.||+++.+.+++.++. ..++|+....+..+........++++.+++++|++ +++|+ +|+++++..++..+
T Consensus 28 ~~~p~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~lA~~~g~~---~~~~~-~g~t~a~~~al~~l---- 98 (387)
T PRK09331 28 RGGILTPEARKALIEYG-DGYSVCDYCPGRLDQIKKPPIADFHEDLAEFLGMD---EARVT-HGAREGKFAVMHSL---- 98 (387)
T ss_pred cCCCCCHHHHHHHHHHH-hccCCCcccccccccccChHHHHHHHHHHHHhCCC---cEEEe-CCHHHHHHHHHHHh----
Confidence 34899999999999887 45566543123344445567999999999999985 46777 67777788777765
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec--CCCCCCCHHHHHHHHhhhc--cCCCceEEEEe
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL--DDDGLLDIEALRSKLELYK--DAKRPILGSFS 240 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~--~~~g~ld~e~L~~al~~~~--~~~~~~lv~~s 240 (609)
+++|| .|+++..+|++....++..|++++.++. ++++.+|++++++++++.. ..+++++++++
T Consensus 99 -----------~~~gd--~Vlv~~~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~ 165 (387)
T PRK09331 99 -----------CKKGD--YVVLDGLAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLT 165 (387)
T ss_pred -----------cCCCC--EEEECCCchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEE
Confidence 37888 6999999999999888889999999998 6678899999999997421 11368999999
Q ss_pred cccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCC
Q 038499 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGS 320 (609)
Q Consensus 241 ~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~ 320 (609)
+++|+||.+.|+++|+++||+||+++++|++|+.|..+++...+ ++|++++|+||++++|.|.|++++++++ ++.
T Consensus 166 ~~~~~tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~~~~---g~D~~~~s~~K~l~~~~~~G~l~~~~~~--i~~ 240 (387)
T PRK09331 166 HVDGNYGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDGKKL---GADFIVGSGHKSMAASAPSGVLATTEEY--ADK 240 (387)
T ss_pred CCCCCCcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCHHHc---CCCEEEeeCcccccCCCCEEEEEECHHH--Hhh
Confidence 99999999999999999999999999999999999888887765 7899999999999999899999999987 333
Q ss_pred CCCCccCCCceEeecccccccccccccccccccCCChh--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Q 038499 321 FPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ--VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN 398 (609)
Q Consensus 321 ~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~--i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~ 398 (609)
+......... . + ...+ .++.. ....+.+++..+... . ...++..+.++++++.|+++
T Consensus 241 ~~~~~~~~~~---------~---~----~~~~-~~~~~~~~~~~~~aal~~~~~~---~-~~~~~~~~~~~~l~~~L~~l 299 (387)
T PRK09331 241 VFRTSRKFGV---------K---E----VELL-GCTLRGAPLVTLMASFPHVVER---V-KRWDEEVKKARWFVDELEKI 299 (387)
T ss_pred cccccCCCcc---------c---c----eeee-ceecCchHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHhcC
Confidence 3221100000 0 0 0001 11111 111112333332211 1 23445567788999999999
Q ss_pred CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhH
Q 038499 399 QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQ 478 (609)
Q Consensus 399 p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~ 478 (609)
+|++++... ....+++.+.... -. . ...+.......+.+.|.+ +||..-.. +
T Consensus 300 ~g~~~~~~~-~~~~~i~~~~~~~-~~-~-------~~~~~~~~~~~~~~~L~~-~gI~~~~~-------~---------- 351 (387)
T PRK09331 300 EGFKQLGEK-PRNHDLMKFETPS-FD-E-------IAKKHKRRGFFLYEELKK-RGIHGIKP-------G---------- 351 (387)
T ss_pred CCEEEeccC-cCcCCeEEEeCCc-hh-H-------HhhhccccchhHHHHHHH-cCceEEcc-------C----------
Confidence 999998632 1233444443221 00 0 000111245678888865 59973210 0
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 479 SYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 479 ~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
....+|+.. ...|++|+++++++|+++.++
T Consensus 352 ---------------~~~i~ri~~-~g~t~~di~~l~~aL~~i~~~ 381 (387)
T PRK09331 352 ---------------ATKEFKLST-YGLTWEQVEYVADAFKEIAEK 381 (387)
T ss_pred ---------------CceEEEEEe-ccCCHHHHHHHHHHHHHHHHh
Confidence 023455554 447999999999999999775
|
|
| >COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-27 Score=246.64 Aligned_cols=329 Identities=18% Similarity=0.172 Sum_probs=254.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
....+..++.++.+.++..++.+..+.++++|+||. ++...+..+ ++|||+ |++....-++.
T Consensus 32 ~s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~-amEAav~sl---------------~~pgdk--VLv~~nG~FG~ 93 (383)
T COG0075 32 RSPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTL-AMEAAVASL---------------VEPGDK--VLVVVNGKFGE 93 (383)
T ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHH-HHHHHHHhc---------------cCCCCe--EEEEeCChHHH
Confidence 456788999999999999999986557788877777 566655544 589996 55544444443
Q ss_pred H--HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccc
Q 038499 195 L--LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA 272 (609)
Q Consensus 195 ~--~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~ 272 (609)
. ..++.+|++++.+..++.-.+|+++++++|+++ +..+++++.|+.++||++.|+++|+++|++||+++|||+..
T Consensus 94 R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~---~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g~l~iVDaVs 170 (383)
T COG0075 94 RFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKD---PDIKAVAVVHNETSTGVLNPLKEIAKAAKEHGALLIVDAVS 170 (383)
T ss_pred HHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcC---CCccEEEEEeccCcccccCcHHHHHHHHHHcCCEEEEEecc
Confidence 3 345678999999999888889999999999953 57789999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccc-c
Q 038499 273 SGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE-R 351 (609)
Q Consensus 273 ~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~-r 351 (609)
+.|..++++.++ ++|+++++++|++++|.|.|++.++++.. +.+......+ |..+...|++..+. +
T Consensus 171 S~Gg~~~~vd~w---giDv~itgSQK~l~~PPGla~v~~S~~a~--e~~~~~~~~~--------~ylDL~~~~~~~~~~~ 237 (383)
T COG0075 171 SLGGEPLKVDEW---GIDVAITGSQKALGAPPGLAFVAVSERAL--EAIEERKHPS--------FYLDLKKWLKYMEKKG 237 (383)
T ss_pred cCCCcccchhhc---CccEEEecCchhccCCCccceeEECHHHH--HHHhcCCCCc--------eeecHHHHHHHHhhcC
Confidence 999999999997 99999999999999999999999999883 3332111111 12233333333333 5
Q ss_pred ccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 352 ESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 352 ~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
....||++..+. +.++... ...|.+.+.+|++.+++++++.+.++ |++++. .+..+++.++-...+.+
T Consensus 238 ~~p~Tppv~~i~aL~~al~~i--~~EGle~r~~RH~~~~~a~r~~~~al-Gl~~~~-~~~~~s~tvta~~~P~g------ 307 (383)
T COG0075 238 STPYTPPVNLIYALREALDLI--LEEGLEARIARHRRLAEALRAGLEAL-GLELFA-DPERRSPTVTAIKVPEG------ 307 (383)
T ss_pred CCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHHHc-CCcccc-CcccCCCceEEEECCCC------
Confidence 667788776655 4555544 56789999999999999999999998 999998 34466766666655512
Q ss_pred CCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHH
Q 038499 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNE 509 (609)
Q Consensus 430 ~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~e 509 (609)
++..++...+.+++||.+.+|.. + ++...+||+.--+.+.+
T Consensus 308 ----------~~~~~~~~~~~~~~g~~i~gg~~------~-----------------------l~gkifRIGhMG~~~~~ 348 (383)
T COG0075 308 ----------VDDKKVRRALLKEYGVEIAGGQG------P-----------------------LKGKIFRIGHMGNVRPE 348 (383)
T ss_pred ----------CCcHHHHHHHHHhCCEEeccccc------c-----------------------cCccEEEEecCccCCHH
Confidence 34555666777889999987642 1 13578999975589999
Q ss_pred HHHHHHHHHHHHHHhcc
Q 038499 510 EFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 510 eid~ll~al~~v~~~~~ 526 (609)
++...+.+|+.++....
T Consensus 349 dv~~~l~ale~~L~~~g 365 (383)
T COG0075 349 DVLAALAALEAALRELG 365 (383)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 99999999999998754
|
|
| >PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.6e-28 Score=256.69 Aligned_cols=339 Identities=13% Similarity=0.122 Sum_probs=236.9
Q ss_pred CCCCCChHHHHHHHHHhhcCCccCCCCCCc---hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHh
Q 038499 84 TASGRSLRYIENYIINNVLPFYGNTHTCDS---YVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVM 160 (609)
Q Consensus 84 ~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~---~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l 160 (609)
.+....|+.|.+++.+.+..+. +.+.+.+ +....+.++++++++.+++++|++.+.+|+|+.+++++++..++..+
T Consensus 9 pGP~~~p~~V~~a~~~~~~~~~-~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl 87 (360)
T PRK05355 9 AGPAMLPEEVLEQAQQELLDWN-GSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNL 87 (360)
T ss_pred CCCCCCCHHHHHHHHHHhhccc-cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhc
Confidence 4446678899999988775543 4444332 33445569999999999999998543467777566677788776554
Q ss_pred cccchhhHHHHHHhhhcCCCce-EEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHH-HHhhhccCCCceEE
Q 038499 161 GIAVPSILREKLIKCLRDEERW-VVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRS-KLELYKDAKRPILG 237 (609)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~-~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~-al~~~~~~~~~~lv 237 (609)
+.+|++. +|..+.++|.. ...++..|.. +.+..++ .+..+..++++ +|+ .++++|
T Consensus 88 ---------------~~~g~~~l~i~~G~fg~r~-~~~a~~~g~~-~~~~~~~~~g~~~~~~~~~~~l~-----~~~~~V 145 (360)
T PRK05355 88 ---------------LGGGKKADYVDTGSWSKKA-IKEAKKYGEV-NVAASSEDDGFTYIPPLDEWQLS-----DDAAYV 145 (360)
T ss_pred ---------------CCCCCeEEEEECCHHHHHH-HHHHHHhCCc-eEEecccccCCCCCCChhhccCC-----CCCCEE
Confidence 4666652 34445555554 3455667865 6666554 56666666666 666 478999
Q ss_pred EEecccCcccccc-CHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhh
Q 038499 238 SFSACSNVTGIYS-DTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALY 316 (609)
Q Consensus 238 ~~s~~sn~TG~~~-dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~ 316 (609)
+++|+.|.||++. |+++| ||++++||+++++|+.++|+.++ |++++|.||++| |.|+|++++++++
T Consensus 146 ~~th~eTstGv~~~~i~~i------~g~l~vVDavss~g~~~idv~~~-----d~~~~ssqK~lg-P~Glg~l~~s~~~- 212 (360)
T PRK05355 146 HYTSNETIDGTEFHELPDT------GDVPLVADMSSDILSRPIDVSKF-----GLIYAGAQKNIG-PAGLTIVIVREDL- 212 (360)
T ss_pred EEccCCCcceEecCccccc------CCCcEEEEcCccccCccCCHHHc-----cEEEEecccccc-CCceEEEEECHHH-
Confidence 9999999999998 77766 89999999999999999999864 699999999997 9999999999999
Q ss_pred ccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhc-CHHHHHHHHHHHHHHHHH
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYI-GHEVIKKQEETYIERALE 393 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~~~~~~ 393 (609)
++++.|. .+ ++.++. .+ .......+||++..+. .+++++. ..+ |.+.+.+|++++++++++
T Consensus 213 -l~~~~~~-~~-~~~~~~--------~~---~~~~~~~~Tp~~~~i~aL~~aL~~i--~~~gG~e~i~~r~~~l~~~l~~ 276 (360)
T PRK05355 213 -LGRALPS-IP-SMLDYK--------TH---ADNDSMYNTPPTFAIYLAGLVFKWL--KEQGGVAAMEKRNQEKAALLYD 276 (360)
T ss_pred -HhhcccC-CC-hHHHHH--------HH---HhcCCccCCCcHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHH
Confidence 5566553 12 121111 01 1222345899988776 4555555 567 899999999999999999
Q ss_pred HhCCCCceEEeCCCCCCCc-ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhc
Q 038499 394 RLLPNQNIKILGNTSTKRQ-AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLL 472 (609)
Q Consensus 394 ~L~~~p~i~v~~~~~~~r~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll 472 (609)
.|++++.+..+.+. ..|+ .+++|.+.. . ....++.+.+.+ .||.+..| +.
T Consensus 277 ~l~~~~~~~~~~~~-~~rs~~v~sf~~~~-~----------------~~~~~~~~~~~~-~Gi~~~~~--------~~-- 327 (360)
T PRK05355 277 AIDSSDFYRNPVAP-EDRSRMNVPFTLAD-E----------------ELDKKFLAEAKA-AGLVGLKG--------HR-- 327 (360)
T ss_pred HHHhCCCcccCCCh-hhcCCcEEEEEcCC-h----------------HHHHHHHHHHHH-CCCcccCC--------CC--
Confidence 99998633333221 2355 457887654 1 112333334432 46654322 11
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 473 DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 473 ~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..|.+|+|+++|+|.+||++++++|+++++.
T Consensus 328 ---------------------~~g~vRiS~~~~nt~eei~~l~~~l~~~~~~ 358 (360)
T PRK05355 328 ---------------------SVGGMRASIYNAMPLEGVQALVDFMKEFERR 358 (360)
T ss_pred ---------------------ccCcEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1478999999999999999999999998764
|
|
| >TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA | Back alignment and domain information |
|---|
Probab=99.96 E-value=7e-27 Score=249.13 Aligned_cols=353 Identities=18% Similarity=0.104 Sum_probs=235.8
Q ss_pred HHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHH
Q 038499 52 EKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIK 131 (609)
Q Consensus 52 ~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia 131 (609)
++.++.+++.+-| ..|++.++ ++++....|.+ .+.+++...+....++++. +. ....+.+++++.++
T Consensus 3 ~~~~~~~~~~~~~-----~~~~~~~~--~~~~~~~~~~~-~~~~a~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~la 69 (373)
T TIGR03812 3 EEVLEELKEYRSE-----DLKYSDGR--ILGSMCTNPHP-IAVKAYDMFIETNLGDPGL---FP--GTKKIEEEVVGSLG 69 (373)
T ss_pred HHHHHHHHHHHhc-----CCCCCCCc--EEEEEeCCchH-HHHHHHHHHhhcCCCCccc---Cc--cHHHHHHHHHHHHH
Confidence 3455666664322 12333322 34444444433 3456666655544455432 12 24577889999999
Q ss_pred HHhCCCCCCcEEEeCChHHHHHHHHHHHhc-ccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec
Q 038499 132 KCLGGGQEDAMIFCGSGTTAAIKRLQEVMG-IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL 210 (609)
Q Consensus 132 ~~~g~~~~~~vift~sGttaal~~l~~~l~-~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~ 210 (609)
+++|+++. +++++ +|++.++..++.++. +..+ -++|| .|+++..+|+++...++..|++++.++.
T Consensus 70 ~~~g~~~~-~~~~~-~g~~~~~~~~~~~~~~~~~~----------~~~g~--~vl~~~~~h~~~~~~~~~~G~~~~~v~~ 135 (373)
T TIGR03812 70 NLLHLPDA-YGYIV-SGGTEANIQAVRAAKNLARE----------EKRTP--NIIVPESAHFSFEKAAEMLGLELRYAPL 135 (373)
T ss_pred HHhCCCCC-CeEEe-ccHHHHHHHHHHHHHHHHhc----------cCCCc--EEEECCcchHHHHHHHHHcCCeEEEEee
Confidence 99999866 66666 455555555544331 0000 03456 6999999999988888889999999999
Q ss_pred CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc----------ccc
Q 038499 211 DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV----------EID 280 (609)
Q Consensus 211 ~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~----------~id 280 (609)
++++.+|+++|+++++ +++..+++.+++|+||.+.|+++|.++||++|+++++|+||+.+.. .++
T Consensus 136 ~~~~~~d~~~l~~~l~-----~~~~~vv~~~~~~~tG~~~~~~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d 210 (373)
T TIGR03812 136 DEDYTVDVKDVEDLID-----DNTIGIVGIAGTTELGQIDDIEELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFD 210 (373)
T ss_pred CCCCCcCHHHHHHHHh-----hCcEEEEEECCCCCCCccCCHHHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCcc
Confidence 8888999999999997 4565444444789999999999999999999999999999875432 233
Q ss_pred CCCCCCCCccEEEEcCCCCCCCCCCcEEEEE-echhhccCCCC---CCccCCCceEeecccccccccccccccccccCCC
Q 038499 281 VRSGQTDGYDAIFLSTHKFLGGPGSPGILLM-TKALYQLGSFP---PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~-~~~~~~l~~~~---p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
+.. .++|++++|+|||..+|.++|++++ ++++ ++.+. |...++ ......||
T Consensus 211 ~~~---~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~--~~~l~~~~~~~~~~--------------------~~~~~~gt 265 (373)
T TIGR03812 211 FSL---PGVQSITIDPHKMGLSPIPAGGILFRSKSY--LKYLSVDAPYLTVK--------------------KQATITGT 265 (373)
T ss_pred ccC---CCCCEEEECccccCCCcCCceEEEEeCHHH--HhhhcccCcccCCC--------------------CCcceEee
Confidence 322 3789999999998777777776664 5555 33331 110000 01112366
Q ss_pred hhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCC
Q 038499 357 PQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKT 434 (609)
Q Consensus 357 p~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~ 434 (609)
++..... .+++..+ ...|.+.+.++..++++++++.|++++...++.+ ..++++|....
T Consensus 266 ~~~~~~~~~~~~l~~l--~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~----~~~~v~~~~~~------------- 326 (373)
T TIGR03812 266 RSGASAAATYAVIKYL--GREGYRKIVAECMENTRYLVEELKKIGFEPVIEP----VLNIVAFEVDD------------- 326 (373)
T ss_pred chhHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcCC----CceEEEEEeCC-------------
Confidence 6655443 3333332 3557788899999999999999998843334432 34566554432
Q ss_pred CCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHH
Q 038499 435 ETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFT 514 (609)
Q Consensus 435 ~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~l 514 (609)
...+.+.|.+ .||.++.+. .++++|+++++++|++|++++
T Consensus 327 -------~~~v~~~L~~-~gi~v~~~~--------------------------------~~~~iRis~~~~~t~edid~l 366 (373)
T TIGR03812 327 -------PEEVRKKLRD-RGWYVSVTR--------------------------------CPKALRIVVMPHVTREHIEEF 366 (373)
T ss_pred -------HHHHHHHHHH-CCceeccCC--------------------------------CCCEEEEEEECCCCHHHHHHH
Confidence 3578888866 499987421 147899999999999999999
Q ss_pred HHHHHH
Q 038499 515 LEALEF 520 (609)
Q Consensus 515 l~al~~ 520 (609)
+++|++
T Consensus 367 ~~~L~~ 372 (373)
T TIGR03812 367 LEDLKE 372 (373)
T ss_pred HHHHhh
Confidence 999976
|
Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions. |
| >TIGR01366 serC_3 phosphoserine aminotransferase, putative | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.7e-28 Score=255.03 Aligned_cols=338 Identities=12% Similarity=0.121 Sum_probs=233.4
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
.++.|.+++.+....... .++.+....+.++++|+.+++++|++++.+|+|+.+++|.+++.++..+
T Consensus 14 ~~~~v~~a~~~~~~~~~~-----~~hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l-------- 80 (361)
T TIGR01366 14 VRLEQLQALTTTAASLFG-----TSHRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGL-------- 80 (361)
T ss_pred CCHHHHHHHHhcCccccc-----cCcCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhc--------
Confidence 455666665533211111 1234566789999999999999999654478886455666898887655
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHHHHHc---CceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS---LAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~---G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~ 245 (609)
+. ++ .+++..-+|.+....+... +.++..++.++...++. .+. +++++|+++|++|.
T Consensus 81 -------~~-~~--~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----~~~-----~~~~lV~~~h~et~ 140 (361)
T TIGR01366 81 -------IE-KK--SLHLSFGEFSSKFAKAVKLAPWLGEPIIVTADPGSAPEP-----QAD-----PGVDVIAWAHNETS 140 (361)
T ss_pred -------cc-cc--ccEEecCHHHHHHHHHHHhhhccCCceEEecCCCCCCCC-----ccC-----CCCCEEEEcccCCc
Confidence 12 22 3444445554443332221 23677777665443433 233 68999999999999
Q ss_pred cccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCc
Q 038499 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPST 325 (609)
Q Consensus 246 TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~ 325 (609)
||.+.|+++| +|++|++++||+++++|+.++|+.. +|++++|+||++|+|+|.+++++++++ ++++.+..
T Consensus 141 tG~~~pi~~I---~~~~g~~~iVDavqs~g~~~idv~~-----~D~~~~s~~K~lg~~~Gl~~~~~s~~~--~~~~~~~~ 210 (361)
T TIGR01366 141 TGVAVPVRRP---EGSDDALVVIDATSGAGGLPVDIAE-----TDVYYFAPQKNFASDGGLWLAIMSPAA--LERIEAIA 210 (361)
T ss_pred cceecccccc---cccCCCeEEEEcCccccCCCCCHHH-----CCEEEEEchhhcCCCCceEEEEECHHH--Hhhhhccc
Confidence 9999999988 5889999999999999999999973 699999999999999889999999998 55666665
Q ss_pred cCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhCCCCceE
Q 038499 326 CGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYI-GHEVIKKQEETYIERALERLLPNQNIK 402 (609)
Q Consensus 326 ~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~~~~~~~L~~~p~i~ 402 (609)
.++..+.+. .+...+.....+....+||++..+. .++++++ +.. |.+.+.++++++++++++.+.++++++
T Consensus 211 ~~~~~~p~~----~d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l--~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~ 284 (361)
T TIGR01366 211 ASGRWVPEF----LSLPTAVDNSLKNQTYNTPAIATLALLAEQIDWM--NGNGGLDWAVARTADSSSRLYSWAQERPYAT 284 (361)
T ss_pred CCCCCCchh----hhHHHHHhccccCCCCCCchHHHHHHHHHHHHHH--HHccCHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 554432110 0111122111223445677776543 5566665 445 699999999999999999999997777
Q ss_pred EeCCCC---CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHH
Q 038499 403 ILGNTS---TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQS 479 (609)
Q Consensus 403 v~~~~~---~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~ 479 (609)
++.... .+..+.++| . . + ++..++.+.|.+ +||.+.+| +.. +
T Consensus 285 ~~~~~~~~~s~~v~~v~~-~-~-g----------------~~~~~v~~~L~~-~gI~i~~~------~~~-l-------- 329 (361)
T TIGR01366 285 PFVTDPGKRSQVVGTIDF-V-D-D----------------IDAATVAKILRA-NGIVDTEP------YRK-L-------- 329 (361)
T ss_pred cCCCChhhcccceEEEEC-C-C-c----------------cCHHHHHHHHHH-CCCeeccC------ccc-c--------
Confidence 765322 223344555 2 3 2 578899999955 59998643 111 1
Q ss_pred HHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 480 YQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 480 ~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++.+|+|++.|+|.+|+++++++|++++++
T Consensus 330 --------------~~~~vRis~~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 330 --------------GRNQLRVAMFPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred --------------CCCcEEEEcCCCCCHHHHHHHHHHHHHHHhh
Confidence 2468999999999999999999999998764
|
This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria. |
| >PRK04366 glycine dehydrogenase subunit 2; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-26 Score=250.77 Aligned_cols=359 Identities=17% Similarity=0.153 Sum_probs=239.9
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCc-hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH--HHhcccc
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDS-YVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ--EVMGIAV 164 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~-~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~--~~l~~~~ 164 (609)
..++.|.+++.+.- .+.+.+.... ....+..+++.++++++++++|.+. ..++.++|+++.+..+. +.+.
T Consensus 81 ~~~p~i~~~~~~~~--~~~~~tpYq~e~~sqG~lel~~~~~~~la~l~G~~~--~~l~~~~GA~a~~~~l~~~r~~~--- 153 (481)
T PRK04366 81 KYNPKINEKVARLP--GFAELHPLQPEETVQGALELMYELQEWLKEITGMDA--VTLQPAAGAHGELTGLLMIRAYH--- 153 (481)
T ss_pred CCCHHHHHHHHhCc--chhcCCCCCChhhhhHHHHHHHHHHHHHHHHhCCCc--eEEEeCcHHHHHHHHHHHHHHHh---
Confidence 45667888877642 1233333111 2455677899999999999999973 45565677776555332 2111
Q ss_pred hhhHHHHHHhhhcCCC--ceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecc
Q 038499 165 PSILREKLIKCLRDEE--RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSAC 242 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd--~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~ 242 (609)
+++|| +..|+++..+|+++...++..|++++.++.+.++.+|+++|+++++ +++++++++++
T Consensus 154 -----------~~~Gd~~~~~Vlv~~~~hp~~~~~~~~~G~~vv~v~~~~~~~~D~e~L~~~i~-----~~t~~V~v~~P 217 (481)
T PRK04366 154 -----------EARGDTKRTEVIVPDSAHGTNPASAAMAGFKVVEIPSNEDGLVDLEALKAAVG-----EDTAALMLTNP 217 (481)
T ss_pred -----------hccCcCCCCEEEEcCCccHhHHHHHHHcCCEEEEeecCCCCCcCHHHHHhhcc-----cCCeEEEEeCC
Confidence 24443 3379999999999999999999999999998889999999999997 68999999987
Q ss_pred cCccccc-cCHHHHHHHHHHhCCeEEEeccccCCccc-ccCCCCCCCCccEEEEcCCCCCCCCCC-----cEEEEEechh
Q 038499 243 SNVTGIY-SDTRSIARLLHQYGGFACFDFAASGPYVE-IDVRSGQTDGYDAIFLSTHKFLGGPGS-----PGILLMTKAL 315 (609)
Q Consensus 243 sn~TG~~-~dl~~I~~la~~~g~~vivD~A~~~~~~~-id~~~~~~~~~D~v~~S~hK~lggp~g-----~G~L~~~~~~ 315 (609)
+ +||.+ .|+++|+++||++|+++++|+|+..+... ++...+ |+|++++++|||||+|.| .|++++++++
T Consensus 218 n-~tG~~~~dl~eI~~~a~~~gal~iVD~a~~~~~~g~~~~~~~---GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~ 293 (481)
T PRK04366 218 N-TLGLFERNILEIAEIVHEAGGLLYYDGANLNAILGKARPGDM---GFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEEL 293 (481)
T ss_pred C-CccccchHHHHHHHHHHHcCCEEEEEecChhhhcccCCcccc---CCCEEEEechhhcCCCCCCCCCCeeeeeehhhh
Confidence 6 99987 58999999999999999999998765332 333333 899999999999987743 5799999988
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL 395 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L 395 (609)
++.+++...|...-.|...+. .....+|++.++.+++.++++...+......|++.+.++...+++++.++|
T Consensus 294 --~~~lp~~~v~~~g~~~~l~~~------r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L 365 (481)
T PRK04366 294 --APFLPVPVVEKDGDRYRLDYD------RPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARL 365 (481)
T ss_pred --HhhCCCCeeeccCCceeeccc------ccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455554433211001111000 111124666777665554443332222233456677778888899999999
Q ss_pred CCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCC
Q 038499 396 LPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD 475 (609)
Q Consensus 396 ~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~ 475 (609)
+++. ++..+ .+....+.|.... . .-...+..++.+.|.+ +||.++.- ..|..
T Consensus 366 ~~~~--~~~~~--~~~~~~~~~~~~~--~-----------~~~g~~~~~v~~~L~~-~Gi~~~~~---~~p~~------- 417 (481)
T PRK04366 366 KDIY--DLPYD--RPCMHEFVLSGKK--L-----------KETGVRTLDIAKRLLD-YGFHPPTI---YFPLI------- 417 (481)
T ss_pred HhhC--cccCC--CCeeEEEEEECcc--c-----------cccCCCHHHHHHHHHH-CCccCCcc---ccccc-------
Confidence 8863 33222 1222222222110 0 0001367889999976 59976511 00100
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
.++.+|++++.++|++|+|+++++|+.+.++...
T Consensus 418 ------------------~~~~l~is~~e~~t~edid~l~~~l~~i~~~~~~ 451 (481)
T PRK04366 418 ------------------VPEALMIEPTETESKETLDAFIAAMKQIAEEAKE 451 (481)
T ss_pred ------------------cCCeEEEcccCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1478999999999999999999999999876553
|
|
| >COG3844 Kynureninase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.2e-27 Score=228.88 Aligned_cols=379 Identities=19% Similarity=0.234 Sum_probs=281.0
Q ss_pred HHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchh-hHHHHHHHHHHHHHH
Q 038499 52 EKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYV-GQHTTNMVHEASNYI 130 (609)
Q Consensus 52 ~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~-~~~~~~~~~e~r~~i 130 (609)
.+.+..+|+.|.-.+ +.||||-++.|..|+.+....++...+.|+.-...+... ...+..+-+.+-.++
T Consensus 16 ~dpl~~lr~~f~lp~----------~viyLdgnSLGa~p~~~~a~~~q~a~deW~~~lirsw~~a~~~W~~lp~~lgdkl 85 (407)
T COG3844 16 ADPLAKLRDRFALPG----------GVIYLDGNSLGARPRAVTARLQQVATDEWGEGLIRSWNKAKADWFDLPERLGDKL 85 (407)
T ss_pred cCchhhhHhhccCCC----------CeEEeeccccccCchHHHHHHHHHHHHHHHhhhhhhhcccCCchhhchhHHHHHh
Confidence 445677777775433 799999999999997766666666655554433221111 223456677888999
Q ss_pred HHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec
Q 038499 131 KKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL 210 (609)
Q Consensus 131 a~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~ 210 (609)
+.++|+.++ +++.+ ++++.+++.++.+.- . .++|++ +|+.....+++-..++.- -+++..+..
T Consensus 86 ApLiGA~~~-Evvv~-dtts~nl~k~L~aal-r------------~~~~r~-vIv~E~~~fpTdly~a~g-~~~~~~~~~ 148 (407)
T COG3844 86 APLIGARAG-EVVVT-DTTSINLFKVLAAAL-R------------PQEGRR-VIVSEGDNFPTDLYIAEG-LADLLGIGY 148 (407)
T ss_pred hhhhcCCCC-ceEEe-CCcchHHHHHHHHHh-c------------cCCCce-EEeecCCCCCcchhhhcc-hhhhhcccc
Confidence 999999998 89898 667777777665431 0 245554 555555666665544421 123333333
Q ss_pred CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCcc
Q 038499 211 DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYD 290 (609)
Q Consensus 211 ~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D 290 (609)
+-.+.+.+++++++++ +++.++.+++++.-||.+.|+.+|..++|+||++++||-||++|.+++++... ++|
T Consensus 149 ~~~~~~~P~~~~~~~~-----dd~AvV~L~~V~y~TGql~dm~aiT~~AH~~galv~wDLAHsaGavp~~Lh~~---gaD 220 (407)
T COG3844 149 DLEGVIAPRALEEAIT-----DDVAVVLLSHVNYKTGQLLDMRAITALAHQHGALVGWDLAHSAGAVPVDLHAA---GAD 220 (407)
T ss_pred cceeeeChHHHHHhhc-----cceEEEEeccccccccceeeHHHHHHHHHhcCceEEeehhcccCCcceeeccc---CCC
Confidence 4445678889999998 68999999999999999999999999999999999999999999999999886 999
Q ss_pred EEEEcCCCCC-CCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHH
Q 038499 291 AIFLSTHKFL-GGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAAL 367 (609)
Q Consensus 291 ~v~~S~hK~l-ggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal 367 (609)
+-+.+.||++ |||+++++|++.++. .+...|...||.. ...+|........-....|+..||+++..+. ..++
T Consensus 221 faigcsyKYLNgGPGapa~l~v~~~h--~e~~~~~lsgW~g--ha~pf~m~~~y~p~~ga~rf~~gt~~V~s~aal~~aL 296 (407)
T COG3844 221 FAIGCSYKYLNGGPGAPAGLFVAPRH--RERSWPPLSGWWG--HARPFAMEEVYAPGPGARRFLCGTQPVLSLAALEGAL 296 (407)
T ss_pred eeeeeeceeccCCCCCceeEEecccc--ccccccccccccC--CCCcchhhhccCcCccccceeeCCcchhhhHHHhhhh
Confidence 9999999999 668889999999998 4555555556533 2223333322233345678899999987754 5667
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-C--ceEEeCCCC-CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChH
Q 038499 368 AFWVKEYIGHEVIKKQEETYIERALERLLPN-Q--NIKILGNTS-TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGP 443 (609)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~-p--~i~v~~~~~-~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (609)
+.+ ..+++.+++++...+.+++.+.+... + ++++..|.+ +.|.+.++|.... ..
T Consensus 297 Dif--a~~~i~~lR~kSlaLTd~fieLvEa~~~~~~l~l~tPr~~~~rGsqvS~~hp~--------------------~~ 354 (407)
T COG3844 297 DIF--ADVDITELRKKSLALTDYFIELVEARCEYYGLTLVTPRAHEERGSQVSLYHPH--------------------GY 354 (407)
T ss_pred hhh--hhcCHHHHHHhhhHHHHHHHHHHHhccccCCcEEeccchhhhccceeeEecCc--------------------HH
Confidence 766 56789999999999999999988653 3 688888864 5688899988754 78
Q ss_pred HHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 038499 444 FVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 444 ~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~eeid~ll~al~~v~ 522 (609)
.|++.|.+ .||..- + ..|+.+|+.+ ++|++..|+-..+++|++++
T Consensus 355 ~V~qaLi~-rGVigD--------~-------------------------R~P~vlRfgftPlY~~~~DVw~AV~~L~evL 400 (407)
T COG3844 355 QVMQALID-RGVIGD--------F-------------------------REPDVLRFGFTPLYVSFVDVWDAVDALEEVL 400 (407)
T ss_pred HHHHHHHH-cCcccc--------c-------------------------cCCCeeeecCccceechhHHHHHHHHHHHHH
Confidence 99999976 488532 0 1489999999 79999999999999999998
Q ss_pred Hhc
Q 038499 523 IYG 525 (609)
Q Consensus 523 ~~~ 525 (609)
+.+
T Consensus 401 ~t~ 403 (407)
T COG3844 401 DTL 403 (407)
T ss_pred Hhh
Confidence 754
|
|
| >cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-26 Score=244.75 Aligned_cols=344 Identities=18% Similarity=0.163 Sum_probs=233.3
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
+|..+.+.+++.++. ..++|++...+..+........++++.+++++|. + +++++ +|+++++..++..+
T Consensus 11 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~--~-~i~~~-~g~t~al~~~l~~~------ 79 (361)
T cd06452 11 GRLTPEARKALIEWG-DGYSVCDFCRGRLDEIEKPPIKDFHHDLAEFLGM--D-EARVT-PGAREGKFAVMHSL------ 79 (361)
T ss_pred CCCCHHHHHHHHHHh-cccCCccccccccccccCchHHHHHHHHHHHcCC--c-eEEEe-CCHHHHHHHHHHHh------
Confidence 677888888887766 3346654422223333345688999999999999 3 78888 77777888887765
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCC--CCCHHHHHHHHhhhcc--CCCceEEEEecc
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDG--LLDIEALRSKLELYKD--AKRPILGSFSAC 242 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g--~ld~e~L~~al~~~~~--~~~~~lv~~s~~ 242 (609)
+++|| .|+++..+|++....++..|++++.++.+.++ .+|+++|++++++... .+++++++++++
T Consensus 80 ---------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p 148 (361)
T cd06452 80 ---------CEKGD--WVVVDGLAHYTSYVAAERAGLNVREVPNTGHPEYHITPEGYAEVIEEVKDEFGKPPALALLTHV 148 (361)
T ss_pred ---------cCCCC--EEEEcCCcchHHHHHHHhcCCEEEEEecCCCCCcccCHHHHHHHHHHHhhccCCCceEEEEECC
Confidence 37888 69999999999988888899999999988654 8999999999863211 136899999999
Q ss_pred cCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCC
Q 038499 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP 322 (609)
Q Consensus 243 sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~ 322 (609)
+|+||.+.|+++|.++||++|+++++|+|++.+..+++...+ +.|++++|+||++++|.++|++++++++ ++.+.
T Consensus 149 ~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~~~~~~~---~~d~~~~s~~K~l~~~~~~G~l~~~~~~--~~~l~ 223 (361)
T cd06452 149 DGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMPVSGKEL---GADFIVGSGHKSMAASAPIGVLATTEEW--ADIVF 223 (361)
T ss_pred CCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcCCCHHHc---CCCEEEecCCccccCCCCeEEEEECHHH--HHHHh
Confidence 999999999999999999999999999999988777766554 6899999999999988889999999887 33332
Q ss_pred CCccCCCceEeecccccccccccccccccccCCChhHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc
Q 038499 323 PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ--MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN 400 (609)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~--~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~ 400 (609)
......+. . ......+++.... .+.+++.... +. .+. ..+..+.++++.+.|+++|+
T Consensus 224 ~~~~~~~~---------~--------~~~~~~~~~~~~~~~~~~~al~~~~-~~--~~~-~~~~~~~~~~l~~~L~~l~g 282 (361)
T cd06452 224 RTSQMFKI---------K--------EVELLGCTLRGAPLVTLMASFPHVK-ER--VKR-WDEEVEKARWFVAELEKIEG 282 (361)
T ss_pred cccccccc---------c--------eeeeeccccCchHHHHHHHHHHHHH-HH--HHH-HHHHHHHHHHHHHHHhcCCC
Confidence 21100000 0 0001123332211 1223333321 11 222 23334456889999999999
Q ss_pred eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHH
Q 038499 401 IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSY 480 (609)
Q Consensus 401 i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~ 480 (609)
+++++... ...+++.+.... -.. ...........+.+.|.+ .||.+. +. +
T Consensus 283 ~~v~~~~~-~~~n~~~~~~~~-~~~--------~~~~~~~~~~~~~~~L~~-~gI~~~----~~--------~------- 332 (361)
T cd06452 283 IKQLGEKP-KNHDLMFFETPS-FDE--------IAKKHKRRGYFLYSELKK-RGIHGI----KP--------G------- 332 (361)
T ss_pred eEEECCCC-CCCceEEEEcCC-cch--------hhhhccccchhHHHHHHH-cCceEE----cC--------C-------
Confidence 99986421 233444444321 000 000000123468888866 499742 00 1
Q ss_pred HHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 481 QIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 481 ~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
...++|++.. ..+++|++.++++|+.+.
T Consensus 333 -------------~~~~~ri~~~-g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 333 -------------LTRYFKLSTY-GLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred -------------CceEEEEEec-CCCHHHHHHHHHHHHHHh
Confidence 1358999982 259999999999999764
|
This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface. |
| >cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-26 Score=245.51 Aligned_cols=354 Identities=18% Similarity=0.115 Sum_probs=233.1
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchh--hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYV--GQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~--~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
++.+.....+..++.++.++.... .. .++...+.. ..+..++++++++++++++|++.+ +++++.+|++++...
T Consensus 22 ~~~l~~g~~~~~~p~~~~~~~~~~-~~--~~~~~~~~~~~~~g~~~~~~~~~~~la~~~g~~~~-~v~~~~~g~~~~~~~ 97 (398)
T cd00613 22 MSFLGSGTYKHNPPAVIKRNILEN-EF--YTAYTPYQPEISQGRLQALFELQTMLCELTGMDVA-NASLQDEATAAAEAA 97 (398)
T ss_pred cccccccccCCcCcHHHHHHhccc-cC--cccCCCCChhhhhhHHHHHHHHHHHHHHHHCCCcc-ceeccCchHHHHHHH
Confidence 456655555655555555443333 11 111111111 345668889999999999999765 677775677655444
Q ss_pred HHHHhcccchhhHHHHHHhhhcC--CCceEEEECCCCccchHHHHHHcC----ceEEEEecCCCCCCCHHHHHHHHhhhc
Q 038499 156 LQEVMGIAVPSILREKLIKCLRD--EERWVVFVGPHEHHSNLLSWRQSL----AEVVEIGLDDDGLLDIEALRSKLELYK 229 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~--gd~~~Vlv~~~~h~s~~~~~~~~G----~~vv~v~~~~~g~ld~e~L~~al~~~~ 229 (609)
+..++ +.+ || +|+++..+|+++...|...| ++++.++.++++.+|+++|++++.
T Consensus 98 ~~~~~---------------~~~~~gd--~Vl~~~~~h~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~--- 157 (398)
T cd00613 98 GLAAI---------------RAYHKRN--KVLVPDSAHPTNPAVARTRGEPLGIEVVEVPSDEGGTVDLEALKEEVS--- 157 (398)
T ss_pred HHHHH---------------hcccCCC--EEEEcCccCcchHHHHHHhcccCCcEEEEeccCCCCCcCHHHHHHhcC---
Confidence 43332 244 77 79999999999999998877 999999988778899999999997
Q ss_pred cCCCceEEEEecccCccccccCH-HHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCC-----
Q 038499 230 DAKRPILGSFSACSNVTGIYSDT-RSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGP----- 303 (609)
Q Consensus 230 ~~~~~~lv~~s~~sn~TG~~~dl-~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp----- 303 (609)
++++++++++++ +||.+.|+ ++|+++|++||+++|+|++++.+....+.... ++|++++|+|||+ +|
T Consensus 158 --~~t~~viv~~~~-~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~~~~~~---~~d~~~~s~~K~~-~p~g~Gg 230 (398)
T cd00613 158 --EEVAALMVQYPN-TLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLKPPGEY---GADIVVGNLQKTG-VPHGGGG 230 (398)
T ss_pred --CCeEEEEEECCC-CCceecchHHHHHHHHHhcCCEEEEEeccccccCCCChHHc---CCCEEEeeccccC-CCCCCCC
Confidence 689999999975 89999985 99999999999999999998766554444333 7899999999998 33
Q ss_pred CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccc----cccccccCCChhH-----HHHHHHHHHHHHHHh
Q 038499 304 GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLE----DIEERESGGTPQV-----IQMIRAALAFWVKEY 374 (609)
Q Consensus 304 ~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~----~~~~r~~~gtp~i-----~~~~~aal~~~~~~~ 374 (609)
.+.|++++++++ ++.+.+...|+..... .....++. ....|++.+++++ .....+...+.....
T Consensus 231 p~~g~l~~~~~~--~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~ 303 (398)
T cd00613 231 PGAGFFAVKKEL--VRFLPGRLVGVTKDAE-----GNRAFRLALQTREQHIRREKATSNICTGQALLALMAAMYIVYLGP 303 (398)
T ss_pred CceeEEEEhhhh--HhhCCCCeeccccccC-----CCcceEEecccchhhcccccccccceecHHHHHHHHHHHHHHhCH
Confidence 347899999888 4455444444322100 00000100 0012234455432 222222222222234
Q ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcC
Q 038499 375 IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFG 454 (609)
Q Consensus 375 ~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~G 454 (609)
.|.+++.++.+++++++.++|+++++..+.. ..+.+.+++.+.. .. ..+..++++.|.+ .|
T Consensus 304 ~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~---~~~~~~v~~~~~~-~~--------------~~~~~~~~~~L~~-~g 364 (398)
T cd00613 304 EGLKEIAERAHLNANYLAKRLKEVGGVLPFN---GPFFHEFVLRLPP-LY--------------GIRAEDLAKALID-GG 364 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccCC---CCeeEEEEEEcCC-cc--------------hHHHHHHHHhhhh-cC
Confidence 5778889999999999999999876544221 1344445555432 10 0246788888866 58
Q ss_pred cEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 455 IQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 455 I~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
|.+..- . + . .++.+|+|+++++|++|+|+++++|
T Consensus 365 i~~~~~--------~-~-~--------------------~~~~lRis~~~~~t~edid~~~~~L 398 (398)
T cd00613 365 FHAPTM--------Y-L-P--------------------VDGTLMIEPTETETKEELDALLEAL 398 (398)
T ss_pred cccccc--------c-c-C--------------------CCCeEEEEcCCCCCHHHHHHHHHhC
Confidence 865310 0 0 0 2478999999999999999999874
|
This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life. |
| >TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-25 Score=245.04 Aligned_cols=289 Identities=16% Similarity=0.189 Sum_probs=204.3
Q ss_pred chhhHHHHHHHHHHHHHHHHHhCCCC------------CCcEEEeCChHHHHHHHHHHHhcccchh------hHHHHHHh
Q 038499 113 SYVGQHTTNMVHEASNYIKKCLGGGQ------------EDAMIFCGSGTTAAIKRLQEVMGIAVPS------ILREKLIK 174 (609)
Q Consensus 113 ~~~~~~~~~~~~e~r~~ia~~~g~~~------------~~~vift~sGttaal~~l~~~l~~~~~~------~~~~~~~~ 174 (609)
...+...+.+..++.++++++++..+ ....+||++||.+++..+..+.....+. ...+++.+
T Consensus 121 ~~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~ 200 (522)
T TIGR03799 121 IETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFA 200 (522)
T ss_pred eecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchh
Confidence 34566788999999999999986321 1246888788888888877665422110 00011100
Q ss_pred hhc--CCCceEEEECCCCccchHHHHHHcCc---eEEEEecCCCCCCCHHHHHHHHhhhccCCCceE--EEEecccCccc
Q 038499 175 CLR--DEERWVVFVGPHEHHSNLLSWRQSLA---EVVEIGLDDDGLLDIEALRSKLELYKDAKRPIL--GSFSACSNVTG 247 (609)
Q Consensus 175 ~l~--~gd~~~Vlv~~~~h~s~~~~~~~~G~---~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~l--v~~s~~sn~TG 247 (609)
.+. ..++.+|+++..+|+|+..+++..|. +++.||++++|.+|+++|+++|++.... +++. |+-++.++.||
T Consensus 201 ~~~~~~~~~~~v~~S~~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~-g~~~~~vvataGtt~tG 279 (522)
T TIGR03799 201 ALKHYGYDGLAILVSERGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQ-NIKPLAIVGVAGTTETG 279 (522)
T ss_pred hhhhccCCceEEEECCCchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHC-CCCcEEEEEEecCcCCC
Confidence 000 01245899999999999999988888 8999999999999999999999753322 3444 44446688999
Q ss_pred cccCHHHHHHHHHHhCCeEEEeccccCCccccc-----CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCC
Q 038499 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVEID-----VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP 322 (609)
Q Consensus 248 ~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id-----~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~ 322 (609)
.+.|+++|+++|++||+|+|||+|++++....+ +..+ .++|++++|+|||+++|.|+|++++++... ++.+.
T Consensus 280 aiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gl--e~aDSit~d~HK~l~~P~g~G~llvr~~~~-~~~~~ 356 (522)
T TIGR03799 280 NIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGI--ERADSVTIDAHKQLYVPMGAGMVLFKDPAL-MSAIE 356 (522)
T ss_pred CcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCc--hhCCEEEEChhhcCCcCcccEEEEEeCHHH-HHHhc
Confidence 999999999999999999999999998765444 2221 368999999999999999999999986542 23332
Q ss_pred CCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE
Q 038499 323 PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK 402 (609)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~ 402 (609)
+.. .|... .....+ ...+.+.+.+...-.+.+++.+. ...|++.+.++..++++++.+.|++.|+++
T Consensus 357 ~~~------~Yl~~--~~~~d~---~~~~legsR~~~al~lw~aL~~l--G~~G~~~ii~~~~~la~~l~~~L~~~~~~e 423 (522)
T TIGR03799 357 HHA------EYILR--KGSKDL---GSHTLEGSRPGMAMLVYAGLHII--GRKGYELLIDQSIEKAKYFADLIQQQPDFE 423 (522)
T ss_pred cCc------chhcC--CCCCcc---ccceeecCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhhCCCeE
Confidence 210 00000 000000 12344555555433345555555 567999999999999999999999999999
Q ss_pred EeCCCCCCCcceEEEEecc
Q 038499 403 ILGNTSTKRQAILSFNIHS 421 (609)
Q Consensus 403 v~~~~~~~r~~~~~f~~~~ 421 (609)
++.+ +.+++++|...+
T Consensus 424 l~~~---p~l~iv~Fr~~p 439 (522)
T TIGR03799 424 LVTE---PELCLLTYRYVP 439 (522)
T ss_pred EecC---CCccEEEEEEeC
Confidence 9986 478899999876
|
This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent). |
| >PLN02880 tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.4e-26 Score=246.74 Aligned_cols=403 Identities=11% Similarity=0.084 Sum_probs=256.3
Q ss_pred CcchHHHHHHHHHhhcc-CCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHH
Q 038499 47 SISSSEKKLTWLQSQII-GKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHE 125 (609)
Q Consensus 47 ~~~~~~~~~~~~r~~~~-g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e 125 (609)
...+.++.++.+.+.+. +.. ... ..-|+.|-.+++.+..+...+..... |.....+..+...+.+..+
T Consensus 58 ~~~~~~~~l~~~~~~i~~~~~-~~~------hP~f~~~~~~~~~~~~~lad~l~~~~----n~~~~~~~~sp~~~~lE~~ 126 (490)
T PLN02880 58 QPETLDQVLDDVQAKILPGVT-HWQ------SPNYFAYYPSNSSVAGFLGEMLSAGL----NIVGFSWITSPAATELEMI 126 (490)
T ss_pred CCCCHHHHHHHHHHHHhcCCC-CCC------CCCeeEeccCCCcHHHHHHHHHHHhh----ccCCcccccCcccHHHHHH
Confidence 33447788888877653 321 111 12377777667766665554443332 3222223345567889999
Q ss_pred HHHHHHHHhCCCCC------CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhh--hcCCCceEEEECCCCccchHHH
Q 038499 126 ASNYIKKCLGGGQE------DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKC--LRDEERWVVFVGPHEHHSNLLS 197 (609)
Q Consensus 126 ~r~~ia~~~g~~~~------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~--l~~gd~~~Vlv~~~~h~s~~~~ 197 (609)
+.+++++++|.+++ ...++|++||.+++..+..+.. +..+. +....+.+|+++...|+|...+
T Consensus 127 vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~---------~~~~~~g~~~~~~~vv~~S~~aH~Sv~Ka 197 (490)
T PLN02880 127 VLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARD---------RVLRKVGKNALEKLVVYASDQTHSALQKA 197 (490)
T ss_pred HHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHH---------HHHHHhcccccCCeEEEEcCCchHHHHHH
Confidence 99999999998753 1367887888888877765543 11110 1111345788999999999999
Q ss_pred HHHcCc---eEEEEecCC--CCCCCHHHHHHHHhhhccC-CCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecc
Q 038499 198 WRQSLA---EVVEIGLDD--DGLLDIEALRSKLELYKDA-KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 198 ~~~~G~---~vv~v~~~~--~g~ld~e~L~~al~~~~~~-~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A 271 (609)
++..|+ .++.||.+. ++.+|+++|+++|.+.... ..|.+|+.+.+++.||.+.|+++|+++|++||+|+|||+|
T Consensus 198 a~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlHVDaA 277 (490)
T PLN02880 198 CQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFHVDAA 277 (490)
T ss_pred HHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEEEehh
Confidence 999988 488899875 5789999999999865432 3567899999999999999999999999999999999999
Q ss_pred ccCCcccc-----cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccc
Q 038499 272 ASGPYVEI-----DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLE 346 (609)
Q Consensus 272 ~~~~~~~i-----d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (609)
++++.... .+.. ..++|++++++|||++.|.++|++++++...... +......+.... ........+
T Consensus 278 ~gg~~~~~~~~~~~l~g--ie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~---~~~~~~~Yl~~~---~~~~~~~~~ 349 (490)
T PLN02880 278 YAGSACICPEYRHYIDG--VEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQ---SLSTNPEFLKNK---ASQANSVVD 349 (490)
T ss_pred hHHHHHhCHHHHHHhcC--chhcCEEEECchhhcCCCccEEEEEEeCHHHHHH---HHccCHHHhcCc---cccccCCCC
Confidence 88764432 1221 2468999999999999999999999996431011 111111100000 000000000
Q ss_pred cccccccCCChhHHHHHHHHHHHHH-HHhcCHHHHHHHHH---HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccC
Q 038499 347 DIEERESGGTPQVIQMIRAALAFWV-KEYIGHEVIKKQEE---TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSS 422 (609)
Q Consensus 347 ~~~~r~~~gtp~i~~~~~aal~~~~-~~~~g~~~i~~~~~---~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~ 422 (609)
......+.|... + ++.+|. .+..|.+.++++.+ ++++++.+.|++.|+++++.+ +.+++++|.+.+
T Consensus 350 ~~~~~i~~~rr~-----~-alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~---~~~~iv~Fr~~~- 419 (490)
T PLN02880 350 YKDWQIPLGRRF-----R-SLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTP---RIFSLVCFRLVP- 419 (490)
T ss_pred hhccCcCCCCcc-----c-HHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC---CceEEEEEEEeC-
Confidence 000001111111 1 233332 23456666666666 999999999999999999987 468899999876
Q ss_pred CCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec
Q 038499 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF 502 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~ 502 (609)
..... ....--...+.+.|++...+.+..- .+. ...++|+++
T Consensus 420 ~~~~~--------~~~~~~n~~l~~~l~~~g~~~v~~t---------~~~---------------------g~~~lR~~~ 461 (490)
T PLN02880 420 PKNNE--------DNGNKLNHDLLDAVNSSGKIFISHT---------VLS---------------------GKYVLRFAV 461 (490)
T ss_pred CCCCh--------hhHHHHHHHHHHHHHhCCCEEEEEE---------EEC---------------------CEEEEEEEe
Confidence 21000 0000001234455554444444311 111 146899999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHhc
Q 038499 503 PYYMS-NEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 503 ~~~~t-~eeid~ll~al~~v~~~~ 525 (609)
+.++| ++|++.+++.|.+++++.
T Consensus 462 ~n~~tt~~di~~~~~~i~~~~~~~ 485 (490)
T PLN02880 462 GAPLTEERHVTAAWKVLQDEASKL 485 (490)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHH
Confidence 65555 699999999999988764
|
|
| >TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.9e-26 Score=239.93 Aligned_cols=346 Identities=16% Similarity=0.176 Sum_probs=226.9
Q ss_pred CCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 85 ASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 85 a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
.+|+.+..+.+++.++-. -++..+...+..........+++++.+++++|.++ ++++ +|+++++..++..+
T Consensus 16 ~~g~~~~~~~~a~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~---~~i~-~g~~~a~~~~~~~l---- 86 (370)
T TIGR02539 16 RGGVLTEAARKALVEFGD-GYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDE---ARVT-HGAREGKFAVMHAL---- 86 (370)
T ss_pred hCCCCcHHHHHHHHHHhh-ccccccccccccccccchHHHHHHHHHHHHhCCCc---eEEE-CChHHHHHHHHHHh----
Confidence 368888888888877543 11211111111112234467788899999999963 4556 67777888887776
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhcc--CCCceEEEEe
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKD--AKRPILGSFS 240 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~--~~~~~lv~~s 240 (609)
+++|| .|+++..+|++....++..|++++.++.+. ++.+|+++|++++++... ..++++|+++
T Consensus 87 -----------~~~gd--~Vl~~~~~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~ 153 (370)
T TIGR02539 87 -----------CKEGD--WVVLDGLAHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLT 153 (370)
T ss_pred -----------hCCCC--EEEECCcccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEE
Confidence 37888 699999999999888888999999999863 578999999999964211 1267899999
Q ss_pred cccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCC
Q 038499 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGS 320 (609)
Q Consensus 241 ~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~ 320 (609)
+++|+||.+.|+++|+++|++||+++++|+||+.+..+++.... +.|+++.|+||++++++++|++++++++ ++.
T Consensus 154 ~p~~~~G~~~~l~~i~~la~~~~~~livDea~~~g~~~~~~~~~---~~di~v~s~sK~~~~~g~~G~l~~~~~~--i~~ 228 (370)
T TIGR02539 154 HVDGEYGNLPDAGKVAKVCREKGVPLLLNCAYTVGRMPVSAKEI---GADFIVGSGHKSMAASGPCGVLGMSEEW--EDI 228 (370)
T ss_pred CCCCCCccccCHHHHHHHHHHcCCeEEEECccccCCcCCCHHHc---CCCEEEeeCcccccCCCCEEEEEECHHH--Hhh
Confidence 99999999999999999999999999999999988666655443 6899999999999976779999999988 444
Q ss_pred CCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Q 038499 321 FPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPN 398 (609)
Q Consensus 321 ~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~ 398 (609)
+......+.. .... ...++....... .+++... ....+... +..+.++++.+.|+++
T Consensus 229 l~~~~~~~~~---------~~~~--------~~~~~~~~~~~~~~~~al~~~---~~~l~~~~-~~~~~~~~l~~~L~~~ 287 (370)
T TIGR02539 229 VLRKSRYSPV---------KEVE--------LLGCTSRGAPIVTMMASFPHV---VERVKRWD-EEVKKTRWFVAELEDI 287 (370)
T ss_pred hcccccCCcc---------ceee--------eecccccccHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHHHHhC
Confidence 4322111100 0000 011222111111 1222211 11122222 2333456899999887
Q ss_pred CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcE-eccCcccCChhhhhhcCCChh
Q 038499 399 QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQ-ARGGCACAGPYGHHLLDLDEA 477 (609)
Q Consensus 399 p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~-v~~G~~ca~p~~~~ll~i~~~ 477 (609)
++++++.. ....+++.+.+.. ... . ..+.......+.+.|.+ .||. ++.|
T Consensus 288 -g~~~~~~~-~s~t~~v~~~~~~-~~~-~-------~~~~~~~~~~~~~~L~e-~GI~~ir~~----------------- 338 (370)
T TIGR02539 288 -GFIQLGQK-PKEHDLVKFETPG-FHE-I-------AQKHKRRGYFLYEELKK-RGIHGIRSG----------------- 338 (370)
T ss_pred -CcEEEccC-CCcCceEEEECCc-hhH-H-------hhhhccccHHHHHHHHh-CCCccccCC-----------------
Confidence 78876432 1244555544321 000 0 00000123568888866 5996 5521
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 478 QSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++|+++. ..+++|+++++++|+++.++
T Consensus 339 ----------------~~~~iRis~~-~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 339 ----------------QTKYFKLSVY-GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred ----------------cceEEEEEec-CCCHHHHHHHHHHHHHHHHh
Confidence 1368999983 46999999999999988764
|
Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA. |
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.2e-26 Score=261.29 Aligned_cols=356 Identities=19% Similarity=0.127 Sum_probs=246.4
Q ss_pred ccCCCCCCc-hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH---HHHHHHHHHhcccchhhHHHHHHhhhcC-C
Q 038499 105 YGNTHTCDS-YVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTT---AAIKRLQEVMGIAVPSILREKLIKCLRD-E 179 (609)
Q Consensus 105 ~~n~~~~~~-~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtt---aal~~l~~~l~~~~~~~~~~~~~~~l~~-g 179 (609)
+++.|.-.- ....+..+++.++++++++++|+ ++|+|+.+++. .+++.+++.+. ++ |
T Consensus 551 ~~~~hp~~p~~~~~g~~~~~~~~r~~la~i~g~---~~v~f~pnaga~ge~a~~~vi~~~~---------------~~~G 612 (993)
T PLN02414 551 FANIHPFAPVDQAQGYQEMFEDLGDLLCEITGF---DSFSLQPNAGAAGEYAGLMVIRAYH---------------LSRG 612 (993)
T ss_pred hhhcCCCCCHHHHHHHHHHHHHHHHHHHHHhCC---CeEEEcCCCcHHHHHHHHHHHHHHH---------------hccC
Confidence 355554321 12345678899999999999999 38999954441 46777777652 33 4
Q ss_pred C--ceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHH
Q 038499 180 E--RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIAR 257 (609)
Q Consensus 180 d--~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~ 257 (609)
| |.+|+++..+|++|..+|...|++++.|+.+++|.+|+++|+++++.+. +++++|+++++||.+|...|+++|++
T Consensus 613 d~~r~~vli~~~aH~sn~a~a~~~G~~vv~v~~d~~G~vDle~L~~~i~~~~--~~ta~V~vt~pSn~gg~e~~I~eI~~ 690 (993)
T PLN02414 613 DHHRNVCIIPVSAHGTNPASAAMCGMKIVVVGTDAKGNINIEELRKAAEAHK--DNLAALMVTYPSTHGVYEEGIDEICD 690 (993)
T ss_pred CCCCCEEEeCCCcCccCHHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhccC--CCeEEEEEECCCccccccchHHHHHH
Confidence 4 5689999999999999999999999999999999999999999998321 36899999999999999999999999
Q ss_pred HHHHhCCeEEEeccccCCcc-cccCCCCCCCCccEEEEcCCCCCCCCCC-----cEEEEEechhhccCCCCCCccCCCce
Q 038499 258 LLHQYGGFACFDFAASGPYV-EIDVRSGQTDGYDAIFLSTHKFLGGPGS-----PGILLMTKALYQLGSFPPSTCGGGTV 331 (609)
Q Consensus 258 la~~~g~~vivD~A~~~~~~-~id~~~~~~~~~D~v~~S~hK~lggp~g-----~G~L~~~~~~~~l~~~~p~~~ggg~v 331 (609)
+||++|+++++|+|+..++. ..+...+ |+|++++|.||+|++|.| +|++++++.+ ...+ +|....
T Consensus 691 iah~~Galv~vDgAq~~a~~~l~~p~~~---GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L--~p~l----Pg~~v~ 761 (993)
T PLN02414 691 IIHDNGGQVYMDGANMNAQVGLTSPGFI---GADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHL--APFL----PSHPVV 761 (993)
T ss_pred HHHHcCCEEEEEecCHHhccCcCCcccc---CCCEEEecCCccCCcCcccCCCCeeeEEEchhh--cccC----CCCccc
Confidence 99999999999999988773 3444444 899999999999886654 8999999987 2233 332110
Q ss_pred EeecccccccccccccccccccCCChh---H--HHHHHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHhCCCCceEE
Q 038499 332 NYVNGFNEKDTLYLEDIEERESGGTPQ---V--IQMIRAALAFWVKEYIGHE---VIKKQEETYIERALERLLPNQNIKI 403 (609)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~r~~~gtp~---i--~~~~~aal~~~~~~~~g~~---~i~~~~~~l~~~~~~~L~~~p~i~v 403 (609)
. ..+ +... ......||.+ + ...+..++.|+ ...|.+ ...++...+++|+.++|.+..++..
T Consensus 762 ~-~~~-------~~~r-~~~s~iGt~~~a~~g~al~l~~A~~yi--~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~~~~~ 830 (993)
T PLN02414 762 P-TGG-------IPRP-EKTQPLGTISAAPWGSALILPISYTYI--AMMGSEGLTDASKIAILNANYMAKRLEGHYPVLF 830 (993)
T ss_pred c-CCC-------cccc-cCCCCcCCccchhhhhHHHHHHHHHHH--HHHCHhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence 0 000 0000 0111135522 1 12223344443 344555 4488888899999999987545544
Q ss_pred eCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHH
Q 038499 404 LGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIR 483 (609)
Q Consensus 404 ~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~ 483 (609)
.++.+ +...-+.+.+.. -. ...+.+..++.+.|.+ +||....-. + |
T Consensus 831 ~~~~~-~~~hEfv~~~~~-l~-----------~~~g~~~~di~krL~d-~Gihapt~~-~--p----------------- 876 (993)
T PLN02414 831 RGKNG-TCAHEFIIDLRP-FK-----------NTAGIEPEDVAKRLMD-YGFHAPTMS-W--P----------------- 876 (993)
T ss_pred cCCCC-CeeeeEEEeccc-cc-----------cccCCCHHHHHHHHHH-cCcEEeeec-c--c-----------------
Confidence 44321 111112222221 00 1112566899999985 799754211 1 1
Q ss_pred HHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc--------------cccCCCcccccCCceeec
Q 038499 484 SAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ--------------RFLPLYNFNIKTGTWCFM 544 (609)
Q Consensus 484 ~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~--------------~~~p~y~~~~~~~~w~~~ 544 (609)
.++.+||+++.++|++|+|+++++|..+..+.. +..|.-..+...++|.|.
T Consensus 877 ----------v~~~lmiepTE~~skeelDrf~~al~~i~~e~~~~~~g~~~~~~~~l~~ap~~~~~~~~~~w~~~ 941 (993)
T PLN02414 877 ----------VPGTLMIEPTESESKAELDRFCDALISIREEIADIENGKADRENNVLKGAPHPPSLLMADKWDKP 941 (993)
T ss_pred ----------cCCEEEEEeeeeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCchhhcCCCChHHhhcCCCCCC
Confidence 158899999999999999999999998886654 355777777766789887
|
|
| >PLN02590 probable tyrosine decarboxylase | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-25 Score=240.99 Aligned_cols=414 Identities=12% Similarity=0.060 Sum_probs=264.9
Q ss_pred CCCCCcchHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHH
Q 038499 43 SVPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNM 122 (609)
Q Consensus 43 ~~~r~~~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~ 122 (609)
++|...++.++.++.+++.+.-...... ..-|+.|-.+++.+..++..+..... |+.......+...+++
T Consensus 102 ~~P~~g~~~~~il~~~~~~i~p~~~~~~------hP~f~a~~~~~~~~~~~lgd~l~sa~----n~~~~~~~~sPa~t~l 171 (539)
T PLN02590 102 SAPERPESLKELLDDVSKKIMPGITHWQ------SPSYFAYYASSTSVAGFLGEMLNAGL----SVVGFTWLTSPAATEL 171 (539)
T ss_pred CCCCCCCCHHHHHHHHHHHHhccCCcCC------CCCeeEeccCCCcHHHHHHHHHHHhc----ccccCCcccCchhHHH
Confidence 4445556678888888776642111112 22377777777777766554444332 3333233456678899
Q ss_pred HHHHHHHHHHHhCCCCC------CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhh--cCCCceEEEECCCCccch
Q 038499 123 VHEASNYIKKCLGGGQE------DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCL--RDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l--~~gd~~~Vlv~~~~h~s~ 194 (609)
..++.+++++++|.++. ...+|+++||.+++..+..+.. +..+.. ..-.+.+|+++...|+|.
T Consensus 172 E~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~---------~~~~~~g~~~~~~~vvy~S~~aH~Sv 242 (539)
T PLN02590 172 EIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARD---------RILKKVGKTLLPQLVVYGSDQTHSSF 242 (539)
T ss_pred HHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHH---------HHHhhhcccCCCCEEEEecCCchHHH
Confidence 99999999999998752 2467887788877776655432 211111 111234788999999999
Q ss_pred HHHHHHcCc---eEEEEecCC--CCCCCHHHHHHHHhhhccCC-CceEEEEecccCccccccCHHHHHHHHHHhCCeEEE
Q 038499 195 LLSWRQSLA---EVVEIGLDD--DGLLDIEALRSKLELYKDAK-RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACF 268 (609)
Q Consensus 195 ~~~~~~~G~---~vv~v~~~~--~g~ld~e~L~~al~~~~~~~-~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~viv 268 (609)
..+++..|+ .++.||++. ++.+|+++|+++|.++...+ .|.+|+.+..++.||.+.|+++|+++|++||+|+||
T Consensus 243 ~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~WlHV 322 (539)
T PLN02590 243 RKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIWLHV 322 (539)
T ss_pred HHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCeEEE
Confidence 999999887 589999884 57999999999998654322 567999999999999999999999999999999999
Q ss_pred eccccCCccccc-CCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC--CCCccCCCceEeeccccccccc
Q 038499 269 DFAASGPYVEID-VRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF--PPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 269 D~A~~~~~~~id-~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~--~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
|+|+++.....+ .+.. ....+|.+++++|||++.|.++|++++++.....+.+ .+.+..... . ....
T Consensus 323 DaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~-------~-~~~~ 394 (539)
T PLN02590 323 DAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKV-------S-KKDT 394 (539)
T ss_pred ecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcc-------c-cccc
Confidence 999877543221 1111 1246799999999999999999999999753101111 111110000 0 0000
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCC
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSST 423 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~ 423 (609)
..+......+.+.+.-...+.+.+... ...|+..+.++..++++++.+.|++.|+++++.+ +.+++++|...+ .
T Consensus 395 ~~d~~d~~i~lsRr~raLklW~~lr~~--G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~---~~l~iVcFr~~~-~ 468 (539)
T PLN02590 395 VVNYKDWQISLSRRFRSLKLWMVLRLY--GSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT---RYFSLVCFRLAP-V 468 (539)
T ss_pred CCCccccCCCCCCchHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC---CceEEEEEEecC-C
Confidence 000001111122221111222232222 3457778888899999999999999999999986 578999999876 2
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF- 502 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~- 502 (609)
.... ...--....+.+.|++. |...- + + ..+. ..-++|+++
T Consensus 469 ~~~~--------~~~~~ln~~l~~~l~~~-G~~~v-----s-~--t~~~---------------------g~~~lR~~i~ 510 (539)
T PLN02590 469 DGDE--------DQCNERNRELLAAVNST-GKIFI-----S-H--TALS---------------------GKFVLRFAVG 510 (539)
T ss_pred CCCH--------HHHHHHHHHHHHHHHhC-CCEEE-----E-e--eEEC---------------------CEEEEEEEec
Confidence 2000 00000022344444432 33222 1 1 1111 135899998
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 503 PYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 503 ~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
++.+++++++.+++.|.+.+.+.-+
T Consensus 511 n~~T~~~dv~~~~~~i~~~a~~~~~ 535 (539)
T PLN02590 511 APLTEEKHVTEAWQIIQKHASKFTR 535 (539)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 7888899999999999998776543
|
|
| >PRK00451 glycine dehydrogenase subunit 1; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-26 Score=247.43 Aligned_cols=322 Identities=18% Similarity=0.158 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH
Q 038499 117 QHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196 (609)
Q Consensus 117 ~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (609)
.+..+...+.++++++++|++.+ +++++ +|+++++..++.++. +.+|+ .|+++..+|+++..
T Consensus 108 ~g~~~~~~e~~~~la~l~g~~~~-~v~~~-~g~t~~~~~~~~a~~--------------~~~g~--~Vlv~~~~~~~~~~ 169 (447)
T PRK00451 108 QGTLQAIFEYQTMICELTGMDVA-NASMY-DGATALAEAALMAVR--------------ITKRK--KVLVSGAVHPEYRE 169 (447)
T ss_pred hHHHHHHHHHHHHHHHHhCCCcc-eEEec-CcHHHHHHHHHHHHH--------------hcCCC--EEEEeCccCHHHHH
Confidence 34566777888899999999876 78888 677778877766552 25677 69999999999998
Q ss_pred HHHH----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEE--ec
Q 038499 197 SWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACF--DF 270 (609)
Q Consensus 197 ~~~~----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~viv--D~ 270 (609)
.++. .|++++.++.+++ .+|+++|+++++ +++++++++++ |+||.+.|+++|+++||++|+++++ |.
T Consensus 170 ~~~~~~~~~G~~~~~v~~~~~-~~d~~~l~~~i~-----~~t~~v~l~~p-n~tG~v~~l~~I~~~a~~~~~~~iv~~d~ 242 (447)
T PRK00451 170 VLKTYLKGQGIEVVEVPYEDG-VTDLEALEAAVD-----DDTAAVVVQYP-NFFGVIEDLEEIAEIAHAGGALFIVGVDP 242 (447)
T ss_pred HHHHHHHhCCcEEEEecCCCC-CCCHHHHHHhcC-----CCeEEEEEECC-CCCCeeCCHHHHHHHHHHCCCEEEEEcCh
Confidence 8765 5999999999877 899999999997 68999999998 8999999999999999999999998 64
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCC-----CCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKF-----LGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~-----lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
. +.+..... .. .++|++++|.||| +||| |+|++++++++ ++.+++...|+.. ..............
T Consensus 243 ~-~~g~~~~~-~~---~~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~--~~~~~~~~~g~~~-~~~~~~~~~~~~~~ 313 (447)
T PRK00451 243 V-SLGLLKPP-GE---YGADIVVGEGQPLGIPLSFGGP-YLGFFATRKKL--VRQMPGRLVGETV-DADGKRGFVLTLQA 313 (447)
T ss_pred H-HhccCCCc-cc---CCCCEEEECCCcCCCCCCCCCC-CchHHHhhHHH--HhhCCCCEeeeec-ccCCCeeeEeeccc
Confidence 4 33333221 22 2889999999997 7778 58999999988 5566655555421 10000000000001
Q ss_pred ccccccccCCChhH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEec
Q 038499 346 EDIEERESGGTPQV-----IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIH 420 (609)
Q Consensus 346 ~~~~~r~~~gtp~i-----~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~ 420 (609)
.....+.+.+++++ ++.+.++..+......|.+.+.++..++++++.++|+++++++++.. +.+.+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~------~~~~~~~v 387 (447)
T PRK00451 314 REQHIRREKATSNICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELFDG------PFFNEFVV 387 (447)
T ss_pred cccccccccccccccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEecCC------CeEEEEEE
Confidence 11112333444433 22223332222124467899999999999999999999989988732 22222111
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc-CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG-GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~-G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
.-+ .+..++++.|.+ .||.+.. +..+. | + .++++|
T Consensus 388 ~~~----------------~~~~~~~~~L~~-~gi~~~~~~~~~~-~------~--------------------~~~~~r 423 (447)
T PRK00451 388 RLP----------------KPAEEVNEALLE-KGILGGYDLGRYY-P------E--------------------LGNHLL 423 (447)
T ss_pred ecC----------------CCHHHHHHHHHh-cCCCCCccccccc-C------C--------------------cCCEEE
Confidence 100 246789999966 4776421 11110 0 1 136899
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~ 522 (609)
+++++++|++|+++++++|++++
T Consensus 424 vs~~~~~t~e~i~~l~~~L~~~~ 446 (447)
T PRK00451 424 VCVTEKRTKEDIDALVAALGEVL 446 (447)
T ss_pred EecCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999998764
|
|
| >PRK05937 8-amino-7-oxononanoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=237.90 Aligned_cols=330 Identities=18% Similarity=0.159 Sum_probs=221.7
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCcc-CCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYG-NTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~-n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
|||++++.+..+.+.+++.+....+-. .+|...+..-.+..+.++++++.+++++|++. .++|+ +|+++++. ++.
T Consensus 14 YL~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~gs~~~~g~~~~~~~~e~~la~~~~~~~--~l~~~-sG~~a~~~-~~~ 89 (370)
T PRK05937 14 FLGFSRSDTLVHEVEKRYRLYCRQFPHAQLGYGGSRAILGPSSLLDDLEHKIAHFHGAPE--AFIVP-SGYMANLG-LCA 89 (370)
T ss_pred ccCCCCCHHHHHHHHHHHHHhccccCCCCCCCCCcCcccCChHHHHHHHHHHHHHhCCCe--EEEEC-ChHHHHHH-HHH
Confidence 999999988888888888776543300 12222222222377899999999999999952 57776 88876553 333
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC-CCceEE
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA-KRPILG 237 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~-~~~~lv 237 (609)
.+. +++| .|+++..+|.++..+++......+.++ ..|+++|+++|+..... +.++++
T Consensus 90 ~~~---------------~~~d--~ii~d~~~H~sv~~~~~~~~~~~~~~~-----~~d~~~l~~~l~~~~~~~~~~~~v 147 (370)
T PRK05937 90 HLS---------------SVTD--YVLWDEQVHISVVYSLSVISGWHQSFR-----HNDLDHLESLLESCRQRSFGRIFI 147 (370)
T ss_pred HhC---------------CCCC--EEEEEhhhhHHHHHHHHHcCCceEEec-----CCCHHHHHHHHHhhhccCCCcEEE
Confidence 221 4566 788889999999999987544433343 46899999999743211 245688
Q ss_pred EEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCC----CCCCCCccEEEEcCCCCCCCCCCcEEEEEec
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVR----SGQTDGYDAIFLSTHKFLGGPGSPGILLMTK 313 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~----~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~ 313 (609)
++++++|++|.+.|+++|.++|+++|+++++|+||+.|..+.+.. .+...+.++++.|++|++| |.|.|+++.++
T Consensus 148 ~v~~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~g-~~G~~vl~~~~ 226 (370)
T PRK05937 148 FVCSVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKALG-SMGAALLSSSE 226 (370)
T ss_pred EEecCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhhh-cCceEEEcCHH
Confidence 899999999999999999999999999999999999988777653 1211233467788999997 66677766543
Q ss_pred hhhccC-CCCCCccCCCceEeecccccccccccccccccccCCChh-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 314 ALYQLG-SFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ-VIQMIRAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 314 ~~~~l~-~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~-i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
....+. ...| .++..+.++ ....+.++++++ +..+ +.++++.+++++++
T Consensus 227 ~~~~~~~~~~~--------------------------~~~s~~~~~~~~~a~~aal~~l--~~~~-~~~~~~l~~l~~~l 277 (370)
T PRK05937 227 VKQDLMLNSPP--------------------------LRYSTGLPPHLLISIQVAYDFL--SQEG-ELARKQLFRLKEYF 277 (370)
T ss_pred HHHHHHHhCCC--------------------------CeecCCCCHHHHHHHHHHHHHH--HhCc-HHHHHHHHHHHHHH
Confidence 221011 1111 122233322 222334555554 3345 55678888899999
Q ss_pred HHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh
Q 038499 392 LERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL 471 (609)
Q Consensus 392 ~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l 471 (609)
.+.|.... + .++..+.+.. .+...+.+.|.+ .||.++. .|. |
T Consensus 278 ~~~l~~~~------~-----~~~~~i~~~~------------------~~~~~~~~~L~~-~gi~v~~--~~~-~----- 319 (370)
T PRK05937 278 AQKFSSAA------P-----GCVQPIFLPG------------------ISEQELYSKLVE-TGIRVGV--VCF-P----- 319 (370)
T ss_pred HHhcCCCC------C-----CCEEEEEeCC------------------hhHHHHHHHHHH-CCeeEEe--eCC-C-----
Confidence 88876421 1 0122233333 245678888854 6998863 333 1
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
..+++|+|+++++|++|+++++++|++++++.
T Consensus 320 ----------------------~~~~iRis~~~~~t~edid~l~~~L~~~~~~~ 351 (370)
T PRK05937 320 ----------------------TGPFLRVNLHAFNTEDEVDILVSVLATYLEKY 351 (370)
T ss_pred ----------------------CCCEEEEEcCCCCCHHHHHHHHHHHHHHHHHh
Confidence 13689999999999999999999999988654
|
|
| >COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-25 Score=235.84 Aligned_cols=344 Identities=15% Similarity=0.091 Sum_probs=242.8
Q ss_pred ceEEecCCCC-CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTAS-GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~-g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal 153 (609)
.++.|.-... -+.|..+.+++.+.+..- +. .|....+..++++.+.+++.+..| .+++++|++| +|+++++
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~--~~---~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt-~Ga~~al 102 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEG--GT---HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVT-AGAKEAL 102 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhcc--cC---CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEe-CCHHHHH
Confidence 3455544433 467888999988877642 11 122334456666777777777766 3455459998 8999999
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC---CCCCCCHHHHHHHHhhhcc
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD---DDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~---~~g~ld~e~L~~al~~~~~ 230 (609)
..++.++ +.||| +|+++.+.|+++....+..|++++.++++ .++.+|+++|+++++
T Consensus 103 ~~~~~a~---------------~~pGD--eVlip~P~Y~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~---- 161 (393)
T COG0436 103 FLAFLAL---------------LNPGD--EVLIPDPGYPSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAIT---- 161 (393)
T ss_pred HHHHHHh---------------cCCCC--EEEEeCCCCcCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcC----
Confidence 9888877 58999 69999999999999999999999999975 368999999999999
Q ss_pred CCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCC-c---ccccCCCCCC-CCccEEEEcCCCCCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-Y---VEIDVRSGQT-DGYDAIFLSTHKFLGG 302 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~-~---~~id~~~~~~-~~~D~v~~S~hK~lgg 302 (609)
++||++++++|+||||.+.+ +++|+++|++||++++.|+++..- + .+..+.+... ...-+.+.|++|.++-
T Consensus 162 -~ktk~i~ln~P~NPTGav~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~m 240 (393)
T COG0436 162 -PKTKAIILNSPNNPTGAVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGM 240 (393)
T ss_pred -ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccccc
Confidence 68999999999999999987 677999999999999999996531 1 1121211111 1234666799999984
Q ss_pred CC-CcEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh---cCH
Q 038499 303 PG-SPGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY---IGH 377 (609)
Q Consensus 303 p~-g~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~---~g~ 377 (609)
++ .+||++++ +++. +.+... ......+.+.+.|.+. .+.+ ... ...
T Consensus 241 tGwRvG~~v~~~~~l~--~~~~~~------------------------~~~~~~~~~~~~Q~aa--~~aL-~~~~~~~~~ 291 (393)
T COG0436 241 TGWRIGWVVGPPEELI--AALRKL------------------------KSYLTSCAPTPAQYAA--IAAL-NGPQSDEVV 291 (393)
T ss_pred cccceeEeecChHHHH--HHHHHH------------------------HHhcccCCCHHHHHHH--HHHh-cCccchHHH
Confidence 32 49999999 6552 222100 1222235555555322 2222 111 234
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEe
Q 038499 378 EVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA 457 (609)
Q Consensus 378 ~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v 457 (609)
+.+++..++.++.+.+.|.+++|+.+..+ +....+.|.-.+ .. .+..+++..|+++.||.+
T Consensus 292 ~~~~~~~~~rrd~l~~~l~~~~g~~~~~~---p~Ga~Y~~~~i~-~~---------------~d~~~f~~~Ll~~~gV~v 352 (393)
T COG0436 292 EEMREEYRERRDLLVEALNEIGGLSVVKP---PEGAFYLFPKIP-EL---------------LDSEEFAKKLLEEAGVAV 352 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeeeccC---CCeeEEEEeecC-CC---------------CCHHHHHHHHHHhCCEEE
Confidence 55667788899999999999988998873 234555555444 11 467889999999999999
Q ss_pred ccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 458 RGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 458 ~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+|..|..+. ..+++|||+. .+.++++..++.|+.....
T Consensus 353 ~PG~~Fg~~~--------------------------g~~~vRis~~--~~~~~l~~a~~rl~~~~~~ 391 (393)
T COG0436 353 VPGSGFGEPP--------------------------GEGYVRLSLA--TSEETLEEALRRLARFLAE 391 (393)
T ss_pred ecccccCCCC--------------------------CCCeEEEEEe--cCHHHHHHHHHHHHHHHHh
Confidence 9998776321 1489999997 4568888888888887654
|
|
| >PRK05957 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.3e-25 Score=234.47 Aligned_cols=344 Identities=13% Similarity=0.023 Sum_probs=232.7
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaal 153 (609)
+.++|+.+... +.++.+.+++.+.+.. +....|....+...+++.+++.+++.+|.+ +.++|++| +|++.++
T Consensus 28 ~~~~l~~g~~~~~~~~~~~~a~~~~~~~----~~~~~Y~~~~G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t-~G~~~~l 102 (389)
T PRK05957 28 GTISLGQGVVSYPPPPEAIEALNNFLAN----PENHKYQAVQGIPPLLEAITQKLQQDNGIELNNEQAIVVT-AGSNMAF 102 (389)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhC----CCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEe-CChHHHH
Confidence 45677766554 4677888888776542 211112233345677888999999998974 23478888 7888888
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~ 233 (609)
..++..+ +++|| .|+++.+.|..+...++..|++++.++.+.++.+|+++|+++++ ++
T Consensus 103 ~~~~~~~---------------~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~ 160 (389)
T PRK05957 103 MNAILAI---------------TDPGD--EIILNTPYYFNHEMAITMAGCQPILVPTDDNYQLQPEAIEQAIT-----PK 160 (389)
T ss_pred HHHHHHh---------------cCCCC--EEEEeCCCCcCHHHHHHhcCCEEEEeecCCCCCcCHHHHHHhcC-----cC
Confidence 8777665 37888 69998888888877788899999999998778899999999997 68
Q ss_pred ceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc-cc---ccCCCC-CCCCccEEEEcCCCCCCCCC-
Q 038499 234 PILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY-VE---IDVRSG-QTDGYDAIFLSTHKFLGGPG- 304 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~-~~---id~~~~-~~~~~D~v~~S~hK~lggp~- 304 (609)
++++++++++||||.+.| +++|+++|++||+++++|+++.... .. ..+... ......+++.|++|.+|.|+
T Consensus 161 ~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl 240 (389)
T PRK05957 161 TRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASW 240 (389)
T ss_pred ceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecchhhccCccc
Confidence 999999999999999998 7889999999999999999965211 10 111111 11123577889999997453
Q ss_pred CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHHHHHHH
Q 038499 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHEVIKKQ 383 (609)
Q Consensus 305 g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~~i~~~ 383 (609)
.+|++++++++ ++.+... ......+++...+.+. ..++ ++ ....+...++
T Consensus 241 RiG~~~~~~~~--~~~~~~~------------------------~~~~~~~~~~~~q~~~--~~~l-~~~~~~~~~~~~~ 291 (389)
T PRK05957 241 RIGYMVIPIHL--LEAIKKI------------------------QDTILICPPVVSQYAA--LGAL-QVGKSYCQQHLPE 291 (389)
T ss_pred eeEEEecCHHH--HHHHHHH------------------------HhhcccCCCcHHHHHH--HHHH-hCChHHHHHHHHH
Confidence 49999998887 3333211 0001122333333321 1222 11 1123445556
Q ss_pred HHHHHHHHHHHhCCCCce-EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcc
Q 038499 384 EETYIERALERLLPNQNI-KILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCA 462 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i-~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ 462 (609)
.++.++.+.+.|+.++++ .+..+ ..+.+.+.-.+ .. ++..++++.|.+++||.+++|..
T Consensus 292 ~~~~r~~l~~~L~~~~~~~~~~~~----~gg~~~~~~~~-~~---------------~~~~~~~~~l~~~~gv~v~pg~~ 351 (389)
T PRK05957 292 IAQVRQILLKSLGQLQDRCTLHPA----NGAFYCFLKVN-TD---------------LNDFELVKQLIREYRVAVIPGTT 351 (389)
T ss_pred HHHHHHHHHHHHHhcCCCccccCC----CeeEEEEEeCC-CC---------------CChHHHHHHHHHHCCEEEccchh
Confidence 677788888889877664 43332 33444444333 11 46778889887768999999876
Q ss_pred cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 463 CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 463 ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
|..+ .++|+|||++. .++++++..++.|.+.++.
T Consensus 352 f~~~---------------------------~~~~iRis~~~-~~~~~l~~~~~~l~~~~~~ 385 (389)
T PRK05957 352 FGMK---------------------------NGCYLRIAYGA-LQKATAKEGIERLVQGLKT 385 (389)
T ss_pred hCCC---------------------------CCCEEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 6411 14799999975 3677777777777766543
|
|
| >PRK06207 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=232.39 Aligned_cols=364 Identities=14% Similarity=0.062 Sum_probs=240.9
Q ss_pred HHHHhhccCCCccccC-CCCCCceEEecCCCCC--CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 038499 56 TWLQSQIIGKNAEFDS-PFGKRRLTYADHTASG--RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKK 132 (609)
Q Consensus 56 ~~~r~~~~g~~~~~~~-p~g~~~~vyld~~a~g--~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~ 132 (609)
.++|+.-.|..+.+.+ |.. .+.++|+.+... +.++.+.+++.+.+... +...|....+...+++.+.+++++
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~----~~~~Y~~~~G~~~LR~aia~~l~~ 93 (405)
T PRK06207 19 QEVRQSAAGLEALLRGEPLP-GRPVDFSHGDVDAHEPTPGAFELFSAGVERG----GVQAYTEYRGDADIRELLAARLAA 93 (405)
T ss_pred HHHHhhhhhhhhhhcCCcCC-CCceecCCcCCCCCCCCHHHHHHHHHHHhcC----CCccCCCCCCCHHHHHHHHHHHHH
Confidence 4556655555555543 333 356788876544 34567777777765421 111121122345666777777777
Q ss_pred HhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec
Q 038499 133 CLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL 210 (609)
Q Consensus 133 ~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~ 210 (609)
.+|. +++++|++| +|+++++..++..+ +++|| .|++..+.|+.+...++..|++++.|++
T Consensus 94 ~~g~~~~~~~~I~it-~Ga~~al~~~~~~l---------------~~~Gd--~Vlv~~P~y~~~~~~~~~~g~~v~~v~~ 155 (405)
T PRK06207 94 FTGAPVDAADELIIT-PGTQGALFLAVAAT---------------VARGD--KVAIVQPDYFANRKLVEFFEGEMVPVQL 155 (405)
T ss_pred HhCCCCCCCCCEEEe-CCcHHHHHHHHHHh---------------cCCCC--EEEEeCCCchhHHHHHHHcCCEEEEEec
Confidence 7785 442489998 88999999888876 47899 6999999999988888899999999987
Q ss_pred C-----CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----cc
Q 038499 211 D-----DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VE 278 (609)
Q Consensus 211 ~-----~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~ 278 (609)
+ .++.+|+++|+++++ ++++++++++|+||||.+.+ +++|+++|++||+++|+|++++.-. ..
T Consensus 156 ~~~~~~~~~~~d~~~l~~~~~-----~~~k~v~l~~P~NPTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~ 230 (405)
T PRK06207 156 DYLSADKRAGLDLDQLEEAFK-----AGVRVFLFSNPNNPAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSY 230 (405)
T ss_pred cccCcccCCCcCHHHHHHhhh-----hcCeEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCC
Confidence 6 246799999999997 57899999999999999998 6678889999999999999976421 11
Q ss_pred ccCCCCCC-CCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 279 IDVRSGQT-DGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 279 id~~~~~~-~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
..+..+.. ...-+++.|++|.++-| ..+|+++.++++ ++.+... ......+.
T Consensus 231 ~~~~~~~~~~~~vi~i~SfSK~~~lpGlRiG~ii~~~~l--~~~~~~~------------------------~~~~~~~~ 284 (405)
T PRK06207 231 THLRALPIDPENVITIMGPSKTESLSGYRLGVAFGSPAI--IDRMEKL------------------------QAIVSLRA 284 (405)
T ss_pred CchhcCCCCcCcEEEEecchhhccCcccceEEEEcCHHH--HHHHHHH------------------------HhHhccCC
Confidence 11211110 12237788999999844 349999998877 3332111 00011122
Q ss_pred hhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 357 PQVIQMIRAALAFWVKEY-IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~-~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
+.+.+. ++..++.+. ...+...++.++.++.+.+.|+.++++.+..+ ..+++.|...+ ..
T Consensus 285 ~~~~q~---a~~~~l~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~gg~fl~~~l~-~~----------- 345 (405)
T PRK06207 285 AGYSQA---VLRTWFSEPDGWMKDRIARHQAIRDDLLRVLRGVEGVFVRAP----QAGSYLFPRLP-RL----------- 345 (405)
T ss_pred CHHHHH---HHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC----CeeEEEEEeCc-cc-----------
Confidence 222222 222222221 11344455666678888888988777776644 33555555544 21
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTL 515 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll 515 (609)
..+..++++.|.+++||.+++|..|..+ .++++||+++. +.++++..+
T Consensus 346 ---~~~~~~~~~~l~~~~gV~v~pG~~F~~~---------------------------~~~~~Ris~~~--~~~~l~~al 393 (405)
T PRK06207 346 ---AVSLHDFVKILRLQAGVIVTPGTEFSPH---------------------------TADSIRLNFSQ--DHAAAVAAA 393 (405)
T ss_pred ---CCCHHHHHHHHHHhcCEEEeCchHhCCC---------------------------CCCeEEEEecC--CHHHHHHHH
Confidence 0356778888876679999998765411 25899999984 688888888
Q ss_pred HHHHHHHHh
Q 038499 516 EALEFIAIY 524 (609)
Q Consensus 516 ~al~~v~~~ 524 (609)
+.|..+++.
T Consensus 394 ~rl~~~l~~ 402 (405)
T PRK06207 394 ERIAQLIER 402 (405)
T ss_pred HHHHHHHHH
Confidence 888877654
|
|
| >PLN02263 serine decarboxylase | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-24 Score=227.00 Aligned_cols=383 Identities=13% Similarity=0.104 Sum_probs=257.0
Q ss_pred ccccccccccccCCCCCCCCccccCCCCCCCCCcchHHHHHHHHHhhcc-CCCccccCCCCCCceEEecCCCCCCC-hHH
Q 038499 15 SCKKTCSSEFENEQPHHHSESFGAQDMGSVPKSISSSEKKLTWLQSQII-GKNAEFDSPFGKRRLTYADHTASGRS-LRY 92 (609)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~r~~~~-g~~~~~~~p~g~~~~vyld~~a~g~~-~~~ 92 (609)
-+.+++.++|....|..+.|. +-+|... +++.++.+++.+. +... ++.|..+.-. +..
T Consensus 47 ~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~-~~~~l~~~~~~~~~~~~~------------~~gYp~n~~~d~s~ 106 (470)
T PLN02263 47 LGRNVHTTCLAVTEPEADDEF-------TGDKEAY-MASVLARYRKTLVERTKH------------HLGYPYNLDFDYGA 106 (470)
T ss_pred eecccccccccccCCCCchhh-------hhcchhh-HHHHHHHHHHHHHhcccc------------eeCCCCcccCChhh
Confidence 356778888887777765553 3444444 6777777777764 3322 3333222212 223
Q ss_pred HHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccchhhHHHH
Q 038499 93 IENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE-DAMIFCGSGTTAAIKRLQEVMGIAVPSILREK 171 (609)
Q Consensus 93 v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~~~~~~~ 171 (609)
+.+.+ .....-.++|... +..+..+.++..++.+++++++|.+++ ...++|++||.+++..+..+..
T Consensus 107 l~~~l-~~~~nN~Gdp~~~-s~~~~~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe---------- 174 (470)
T PLN02263 107 LGQLQ-HFSINNLGDPFIE-SNYGVHSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGRE---------- 174 (470)
T ss_pred HHHHH-HhhccCCCCcccc-CCcchhHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHh----------
Confidence 33333 3333333555443 223446889999999999999999763 2467887788888877765532
Q ss_pred HHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC
Q 038499 172 LIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD 251 (609)
Q Consensus 172 ~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d 251 (609)
..+.. +|+++...|+|...+++..|++++.||.+++|.+|+++|+++|.++. .+|.+|+.+.+++++|.+.|
T Consensus 175 ----~~~~~--vvy~S~~aH~Sv~KAa~llgi~~~~Vp~d~~g~mD~~aL~~aI~~d~--~~P~iVvataGTT~~GAiDp 246 (470)
T PLN02263 175 ----VFPDG--ILYASRESHYSVFKAARMYRMECVKVDTLVSGEIDCADFKAKLLANK--DKPAIINVNIGTTVKGAVDD 246 (470)
T ss_pred ----hcCCc--EEEEcCCccHHHHHHHHhcCCcceEeccCCCCcCcHHHHHHHHHhCC--CCcEEEEEEecCCCCcCCCC
Confidence 12222 79999999999999999999999999999999999999999997532 34778899999999999999
Q ss_pred HHHHHHHHHHhCC-----eEEEeccccCCccccc-CC-CCC-CCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCC
Q 038499 252 TRSIARLLHQYGG-----FACFDFAASGPYVEID-VR-SGQ-TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPP 323 (609)
Q Consensus 252 l~~I~~la~~~g~-----~vivD~A~~~~~~~id-~~-~~~-~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p 323 (609)
+++|+++|++||+ |+|||+|.++...+.- .. .+. ...+|.++.++|||++.|.++|++++++.. ++.+..
T Consensus 247 i~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~--~~~~~~ 324 (470)
T PLN02263 247 LDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAPKVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEH--INVLSS 324 (470)
T ss_pred HHHHHHHHHHcCCccCCeeEEEeccchhhHhhhcccccccCCCcCccEEEECCccccCCCcCEEEEEEehhh--Hhhhcc
Confidence 9999999999997 9999999876554321 10 111 124899999999999999999999999876 222210
Q ss_pred CccCCCceEeecccccccccccccccccccCCChhH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce
Q 038499 324 STCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV--IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI 401 (609)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i--~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i 401 (609)
...|+...... -.|+.+. ...+.+.+... ...|+..+.++..++++++.++|+++ ++
T Consensus 325 -----------------~~~Yl~~~d~t-i~gSR~g~~al~lW~~L~~~--G~~G~~~~i~~~~~~A~~l~~~l~~~-g~ 383 (470)
T PLN02263 325 -----------------NVEYLASRDAT-IMGSRNGHAPIFLWYTLNRK--GYRGFQKEVQKCLRNAHYLKDRLREA-GI 383 (470)
T ss_pred -----------------ChHhhCCCCCC-cCCCCCcHHHHHHHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHHhC-CC
Confidence 11122111111 1233221 11122222222 33467777888888999999999988 67
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHH
Q 038499 402 KILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQ 481 (609)
Q Consensus 402 ~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~ 481 (609)
.++.+ +.+.+++|.... ... . . .|.++..
T Consensus 384 ~~~~~---p~s~~V~f~~p~---------------------~~~---~-~-~gW~L~~---------------------- 412 (470)
T PLN02263 384 SAMLN---ELSSTVVFERPK---------------------DEE---F-V-RRWQLAC---------------------- 412 (470)
T ss_pred eEEeC---CCceEEEEecCc---------------------hHH---h-h-cceEEcc----------------------
Confidence 66654 345666665332 111 1 1 2555441
Q ss_pred HHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 482 IRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 482 ~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.+..++|.+.+..+.+.+|.|++.|++...
T Consensus 413 ------------~~~~~Hivvmphv~~~~id~fi~DL~~~~~ 442 (470)
T PLN02263 413 ------------QGNIAHVVVMPSVTIEKLDYFLKELVEKRS 442 (470)
T ss_pred ------------CCCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence 135689999887899999999999988765
|
|
| >TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase | Back alignment and domain information |
|---|
Probab=99.94 E-value=8.7e-25 Score=234.73 Aligned_cols=327 Identities=17% Similarity=0.145 Sum_probs=223.1
Q ss_pred hHHHHHHHHHhhcCC-ccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 90 LRYIENYIINNVLPF-YGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~-~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
++.+.+++.+.+..+ ++++.+. +..| ......++++.+++++|.+ +.++++ +|+ .+++.++.++
T Consensus 54 ~~~v~~~~~~~~~~~~~~~~~s~-~~~G--~~~~~~~le~~ia~~~g~~--~~ii~~-~~~-~a~~~~~~~l-------- 118 (393)
T TIGR01822 54 HPDLIQAAKDALDEHGFGMSSVR-FICG--TQDIHKELEAKIAAFLGTE--DTILYA-SCF-DANGGLFETL-------- 118 (393)
T ss_pred CHHHHHHHHHHHHHhCCCCCCcC-cccC--ChHHHHHHHHHHHHHhCCC--cEEEEC-chH-HHHHHHHHHh--------
Confidence 567888888877653 4444432 2223 3667789999999999984 245553 555 5677666655
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc-CCCceEEEEecccCccc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD-AKRPILGSFSACSNVTG 247 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~-~~~~~lv~~s~~sn~TG 247 (609)
+++|| +|++++.+|+++...++..+++.+.++ .+|+++|++++++... ..+++++++++++|+||
T Consensus 119 -------~~~gd--~vi~~~~~~~s~~~~~~~~~~~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG 184 (393)
T TIGR01822 119 -------LGAED--AIISDALNHASIIDGVRLCKAKRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDG 184 (393)
T ss_pred -------CCCCC--EEEEeccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCC
Confidence 47898 799999999999988888887775553 3699999999974211 12788999999999999
Q ss_pred cccCHHHHHHHHHHhCCeEEEeccccCCcccccCCC----CC-CCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCC
Q 038499 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRS----GQ-TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP 322 (609)
Q Consensus 248 ~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~----~~-~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~ 322 (609)
.+.|+++|+++|++||+++++|++|+.+........ .. ..++|++++|+||+++|+. .|++++++++ ++.+.
T Consensus 185 ~~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r-~G~~~~~~~~--~~~l~ 261 (393)
T TIGR01822 185 VIAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGAS-GGFTTARKEV--VELLR 261 (393)
T ss_pred CcCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCC-cEEEEeCHHH--HHHHH
Confidence 999999999999999999999999977654322110 00 1257999999999999775 5999998877 33221
Q ss_pred CCccCCCceEeecccccccccccccccccccCCChhHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc
Q 038499 323 PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI--QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN 400 (609)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~--~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~ 400 (609)
+... .... .++.+.. ....+++.+. + ..+.+.++.+++++++.+.|.+. +
T Consensus 262 ~~~~----------------------~~~~-~~~~~~~~~~a~~~al~~~--~--~~~~~~~~~~~~~~~l~~~L~~~-g 313 (393)
T TIGR01822 262 QRSR----------------------PYLF-SNSLPPAVVGASIKVLEML--E--ASNELRDRLWANTRYFRERMEAA-G 313 (393)
T ss_pred HhCc----------------------ccee-cCCCCHHHHHHHHHHHHHH--h--cCHHHHHHHHHHHHHHHHHHHHc-C
Confidence 1100 0001 1222222 2223333332 1 34667788899999999999775 7
Q ss_pred eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHH
Q 038499 401 IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSY 480 (609)
Q Consensus 401 i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~ 480 (609)
+.+..+ ..+++.+...+ . .....+++.|.++ ||.+. +..+ |... -
T Consensus 314 ~~~~~~----~~~~~~i~~~~-~----------------~~~~~l~~~L~~~-gI~v~-~~~~--~~~~----~------ 358 (393)
T TIGR01822 314 FDIKPA----DHPIIPVMLYD-A----------------VLAQRFARRLLEE-GIYVT-GFFY--PVVP----K------ 358 (393)
T ss_pred CCCCCC----CCCEEEEEeCC-H----------------HHHHHHHHHHHHC-CeeEe-eeCC--CCCC----C------
Confidence 766533 23455544432 1 2356788888765 99987 3222 1000 0
Q ss_pred HHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 481 QIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 481 ~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
....+|+++++++|++|+++++++|+++.+.
T Consensus 359 -------------~~~~iRis~~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 359 -------------GQARIRVQISAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred -------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 1257999999999999999999999998754
|
This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function. |
| >PRK06108 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-24 Score=230.85 Aligned_cols=337 Identities=17% Similarity=0.083 Sum_probs=228.9
Q ss_pred eEEecCCCC-CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHH
Q 038499 78 LTYADHTAS-GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 78 ~vyld~~a~-g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~ 154 (609)
.+.|+.+.. -+.++.+.+++.+.+... .. .|....+..++++.+.+++.+.+| .+++ +|+++ +|+++++.
T Consensus 26 ~i~l~~g~~~~~~~~~~~~~~~~~~~~~----~~-~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~-~i~~t-~g~~~al~ 98 (382)
T PRK06108 26 VLPLWFGESDLPTPDFIRDAAAAALADG----ET-FYTHNLGIPELREALARYVSRLHGVATPPE-RIAVT-SSGVQALM 98 (382)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHhCCCcCcc-eEEEe-CChHHHHH
Confidence 444443332 244677888887766431 11 122222344556666666666667 5565 88888 78888888
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC---CCCCCHHHHHHHHhhhccC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD---DGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~---~g~ld~e~L~~al~~~~~~ 231 (609)
.++..+ +++|| .|++..+.|+.+...++..|++++.++.+. ++.+|+++|+++++
T Consensus 99 ~~~~~l---------------~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~----- 156 (382)
T PRK06108 99 LAAQAL---------------VGPGD--EVVAVTPLWPNLVAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAIT----- 156 (382)
T ss_pred HHHHHh---------------cCCCC--EEEEeCCCccchHHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcC-----
Confidence 887766 37888 688899999988888899999999999874 34689999999887
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCccc--------ccCCCCCCCCccEEEEcCCCCC
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE--------IDVRSGQTDGYDAIFLSTHKFL 300 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~--------id~~~~~~~~~D~v~~S~hK~l 300 (609)
++++++++++++||||.+.+ +++|+++|+++|+++|+|++++..... .++.. .....+++.|++|.+
T Consensus 157 ~~~~~i~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~--~~~~~i~~~S~SK~~ 234 (382)
T PRK06108 157 PRTRALFINSPNNPTGWTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAE--PDDRIIFVNSFSKNW 234 (382)
T ss_pred ccceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCC--CcCCEEEEeechhhc
Confidence 57899999999999999986 577899999999999999996643211 11111 113457888999998
Q ss_pred CCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHH
Q 038499 301 GGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHE 378 (609)
Q Consensus 301 ggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~ 378 (609)
|.| .++|++++++++ ++.+.... .....+.+.+.+. ++...+ .+ ....+
T Consensus 235 g~~G~RiG~~~~~~~~--~~~~~~~~------------------------~~~~~~~~~~~q~--a~~~~l-~~~~~~~~ 285 (382)
T PRK06108 235 AMTGWRLGWLVAPPAL--GQVLEKLI------------------------EYNTSCVAQFVQR--AAVAAL-DEGEDFVA 285 (382)
T ss_pred cCcccceeeeeCCHHH--HHHHHHHH------------------------HhcccCCChHHHH--HHHHHH-hCChHHHH
Confidence 744 358999999887 33332110 0001223333332 222222 11 12245
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEec
Q 038499 379 VIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQAR 458 (609)
Q Consensus 379 ~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~ 458 (609)
.+.++.++.++++.+.|++++++++..+ ..+++.|...+ .. .+..++++.|.+++||.++
T Consensus 286 ~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~~g~~~~~~l~-~~---------------~~~~~~~~~ll~~~gV~v~ 345 (382)
T PRK06108 286 ELVARLRRSRDHLVDALRALPGVEVAKP----DGAMYAFFRIP-GV---------------TDSLALAKRLVDEAGLGLA 345 (382)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCcccCC----CeeEEEEEeCC-CC---------------CCHHHHHHHHHHhCCEEEe
Confidence 6778888889999999988888887654 33555554443 11 3567788887676899999
Q ss_pred cCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 459 GGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 459 ~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
+|..|. +. .++++|||++. ++++++..++.|+++++
T Consensus 346 pg~~f~-~~--------------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~l~ 381 (382)
T PRK06108 346 PGTAFG-PG--------------------------GEGFLRWCFAR--DPARLDEAVERLRRFLA 381 (382)
T ss_pred CchhhC-CC--------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence 887553 11 24899999996 89999999999987654
|
|
| >TIGR01141 hisC histidinol-phosphate aminotransferase | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-25 Score=231.41 Aligned_cols=324 Identities=18% Similarity=0.174 Sum_probs=224.8
Q ss_pred CCCCceEEecCCC-CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 73 FGKRRLTYADHTA-SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 73 ~g~~~~vyld~~a-~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
.|..+++.|..+. .-+.|+.+.+++.++.......++ .. ..++|+.+++++|++++ +|+++ +|+++
T Consensus 16 ~~~~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-----~~------~~~lr~~ia~~~~~~~~-~i~~~-~G~~~ 82 (346)
T TIGR01141 16 LGGKEVIKLNSNENPFGPPPKAKEALRAEADKLHRYPD-----PD------PAELKQALADYYGVDPE-QILLG-NGSDE 82 (346)
T ss_pred CCCCceEEccCCCCCCCCCHHHHHHHHHhHHHhhcCCC-----CC------HHHHHHHHHHHhCcChH-HEEEc-CCHHH
Confidence 3334566665333 234567788888876532110010 01 25799999999998776 89998 78888
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~ 231 (609)
++..++..+ +++|| .|+++.++|+.+...++..|++++.++++.++.+|++++++++.
T Consensus 83 ~l~~~~~~l---------------~~~gd--~v~~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~----- 140 (346)
T TIGR01141 83 IIELLIRAF---------------LEPGD--AVLVPPPTYSMYEISAKIHGAEVVKVPLDEDGQLDLEDILVAID----- 140 (346)
T ss_pred HHHHHHHHh---------------cCCCC--EEEEcCCCHHHHHHHHHHcCCeEEEeccCCCCCCCHHHHHHhcC-----
Confidence 888887765 36788 68888888887777778899999999998888899999999876
Q ss_pred CCceEEEEecccCccccccCHHHHHHHHHHh--CCeEEEeccccCCcc---cccCCCCCCCCccEEEEcCCCCCCCCC-C
Q 038499 232 KRPILGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYV---EIDVRSGQTDGYDAIFLSTHKFLGGPG-S 305 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~vivD~A~~~~~~---~id~~~~~~~~~D~v~~S~hK~lggp~-g 305 (609)
++++++++++++||||.+.|++++.++++.+ |+++++|++++.-.. ..++.. ....++++.|++|++|.|+ +
T Consensus 141 ~~~~~v~l~~p~NptG~~~~~~~~~~l~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~--~~~~~i~~~S~sK~~g~~G~r 218 (346)
T TIGR01141 141 DKPKLVFLCSPNNPTGNLLSRSDIEAVLERTPEDALVVVDEAYGEFSGEPSTLPLLA--EYPNLIVLRTLSKAFGLAGLR 218 (346)
T ss_pred CCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhhcCCccHHHHHh--hCCCEEEEehhhHhhhchhhh
Confidence 6799999999999999999999999999887 999999999762111 111111 1123577789999997553 4
Q ss_pred cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 038499 306 PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (609)
+|++++++++ ++.+.+... ..+.+...+ .++++++ .+....+.+.++.+
T Consensus 219 ~G~~~~~~~~--~~~~~~~~~--------------------------~~~~~~~~~--~~~~~~l-~~~~~~~~~~~~~~ 267 (346)
T TIGR01141 219 IGYAIANAEI--IDALNKVRA--------------------------PFNLSRLAQ--AAAIAAL-RDDDFIEKTVEEIN 267 (346)
T ss_pred ceeeecCHHH--HHHHHhccC--------------------------CCCCCHHHH--HHHHHHh-CCHHHHHHHHHHHH
Confidence 8999998887 333322110 011112222 2222222 12123667778888
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
++++++.+.|.+++++++..+ ...++++.+.. +..++.+.|.+ .||.+++|..+.+
T Consensus 268 ~~~~~l~~~L~~~~g~~~~~~----~g~~~~~~~~~-------------------~~~~~~~~L~~-~gI~v~~g~~f~~ 323 (346)
T TIGR01141 268 AERERLYDGLKKLPGLEVYPS----DANFVLIRFPR-------------------DADALFEALLE-KGIIVRDLNSYPG 323 (346)
T ss_pred HHHHHHHHHHHhcCCCEECCC----cCCEEEEecCC-------------------CHHHHHHHHHH-CCeEEEeCCCcCC
Confidence 889999999988888886533 23455444321 35778888866 6999998865431
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
.++++|+|++ +++|+++++++|+
T Consensus 324 ----------------------------~~~~iRls~~---~~~~i~~~~~~l~ 346 (346)
T TIGR01141 324 ----------------------------LPNCLRITVG---TREENDRFLAALR 346 (346)
T ss_pred ----------------------------CCCeEEEecC---CHHHHHHHHHHhC
Confidence 1489999987 8999999998873
|
Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme. |
| >PRK07179 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.8e-24 Score=231.77 Aligned_cols=323 Identities=16% Similarity=0.110 Sum_probs=220.7
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHH
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILR 169 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (609)
.+.|.+++.+.+..+..+++....+.+ ......++++.+++++|.+ .++++++|+. |+..++..+.
T Consensus 70 ~p~v~~a~~~~~~~~~~~~~~s~~~~~--~~~~~~~le~~la~~~g~~---~~~~~~sG~~-An~~~l~~l~-------- 135 (407)
T PRK07179 70 HPDIIKAQIAALQEEGDSLVMSAVFLH--DDSPKPQFEKKLAAFTGFE---SCLLCQSGWA-ANVGLLQTIA-------- 135 (407)
T ss_pred CHHHHHHHHHHHHHhCCCCCccccccC--CchHHHHHHHHHHHHhCCC---cEEEECCHHH-HHHHHHHHhC--------
Confidence 467888888888766555543211111 1235677889999999985 3567767766 5566666553
Q ss_pred HHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccc
Q 038499 170 EKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY 249 (609)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~ 249 (609)
.+|+ .|+++.++|.+....++..|++++.++. .|+++|++++++ .++++|++++++|+||.+
T Consensus 136 -------~~g~--~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~----~~~~lV~v~~v~n~tG~i 197 (407)
T PRK07179 136 -------DPNT--PVYIDFFAHMSLWEGVRAAGAQAHPFRH-----NDVDHLRRQIER----HGPGIIVVDSVYSTTGTI 197 (407)
T ss_pred -------CCCC--EEEEECCcCHHHHHHHHHCCCeEEEecC-----CCHHHHHHHHHh----cCCeEEEECCCCCCCCcc
Confidence 5777 6889999999998888888988876653 489999999973 257899999999999999
Q ss_pred cCHHHHHHHHHHhCCeEEEeccccCCccccc----CCCCC-CCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCC
Q 038499 250 SDTRSIARLLHQYGGFACFDFAASGPYVEID----VRSGQ-TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPS 324 (609)
Q Consensus 250 ~dl~~I~~la~~~g~~vivD~A~~~~~~~id----~~~~~-~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~ 324 (609)
.|+++|.++|++||+++|+|++|+.+....+ +.... ..++|+++.|+||++|++ +|++++++++. +.+...
T Consensus 198 ~pl~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~g~~--~G~l~~~~~~~--~~~~~~ 273 (407)
T PRK07179 198 APLADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAFAGR--AGIITCPRELA--EYVPFV 273 (407)
T ss_pred ccHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhhhcc--CeEEEeCHHHH--HHHHHh
Confidence 9999999999999999999999987643221 11111 125699999999999853 69999988772 222100
Q ss_pred ccCCCceEeecccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE
Q 038499 325 TCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK 402 (609)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~ 402 (609)
. ......+|++...+ +.+++... + ..+...++.+++++++.+.|.++ +++
T Consensus 274 ~-----------------------~~~~~~~t~~~~~~aa~~aal~~~--~--~~~~~~~~l~~~~~~l~~~L~~~-g~~ 325 (407)
T PRK07179 274 S-----------------------YPAIFSSTLLPHEIAGLEATLEVI--E--SADDRRARLHANARFLREGLSEL-GYN 325 (407)
T ss_pred C-----------------------cCeeeCCCCCHHHHHHHHHHHHHH--h--cCHHHHHHHHHHHHHHHHHHHHc-CCC
Confidence 0 00011234332222 22333332 1 12456788889999999999887 776
Q ss_pred EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHH
Q 038499 403 ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQI 482 (609)
Q Consensus 403 v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~ 482 (609)
+.+. .+++.+.+.. . .....+.+.|.+ .||.++ .+|. |....
T Consensus 326 v~~~-----~~i~~l~~~~-~----------------~~~~~~~~~L~~-~GI~~~--~~~~-p~~~~------------ 367 (407)
T PRK07179 326 IRSE-----SQIIALETGS-E----------------RNTEVLRDALEE-RNVFGA--VFCA-PATPK------------ 367 (407)
T ss_pred CCCC-----CCEEEEEeCC-H----------------HHHHHHHHHHHH-CCceEe--eecC-CCCCC------------
Confidence 6532 3566555432 1 134567777755 599744 2333 21110
Q ss_pred HHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 483 RSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 483 ~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++.+||+++.++|++|+++++++|++++++.
T Consensus 368 -----------~~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 399 (407)
T PRK07179 368 -----------NRNLIRLSLNADLTASDLDRVLEVCREARDEV 399 (407)
T ss_pred -----------CCceEEEEECCCCCHHHHHHHHHHHHHHHHhh
Confidence 14799999999999999999999999988763
|
|
| >cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I) | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-24 Score=227.40 Aligned_cols=325 Identities=18% Similarity=0.113 Sum_probs=220.6
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHH
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILR 169 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (609)
++.|.+++.+.+.. |++...+ +.........+.++++.+++++|++ +.+++ ++|+.+ +..++..+
T Consensus 17 ~~~v~~a~~~~~~~-~~~~~~~-~~~~~~~~~~~~~l~~~la~~~~~~--~~iv~-~sg~~a-~~~~~~~~--------- 81 (349)
T cd06454 17 HPEVIEAAKEALDK-YGVGAGG-SRLISGTSDLHEELEEELAEFHGKE--AALVF-SSGYAA-NDGVLSTL--------- 81 (349)
T ss_pred CHHHHHHHHHHHHH-hCCCCCC-cCeecCCchHHHHHHHHHHHHhCCC--CEEEe-ccHHHH-HHHHHHHh---------
Confidence 68899999998865 3443221 1112234667889999999999985 24554 477664 44444444
Q ss_pred HHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccc
Q 038499 170 EKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY 249 (609)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~ 249 (609)
+++|| .|+++.++|+++...++..|++++.++. +|++++++.+++.....+++++++++++|+||.+
T Consensus 82 ------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~ 148 (349)
T cd06454 82 ------AGKGD--LIISDSLNHASIIDGIRLSGAKKRIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDI 148 (349)
T ss_pred ------cCCCC--EEEEehhhhHHHHHHHHHcCCceEEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCCc
Confidence 36888 6999999999998889999999988863 4788899888742212467899999999999999
Q ss_pred cCHHHHHHHHHHhCCeEEEeccccCCcccccC-----CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCC
Q 038499 250 SDTRSIARLLHQYGGFACFDFAASGPYVEIDV-----RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPS 324 (609)
Q Consensus 250 ~dl~~I~~la~~~g~~vivD~A~~~~~~~id~-----~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~ 324 (609)
.|+++|+++|++||+++|+|++++.+...... ......+.|+++.|+||++++ .| |+++.++++ ++.+.+.
T Consensus 149 ~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~-~g-G~i~~~~~~--~~~~~~~ 224 (349)
T cd06454 149 APLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA-VG-GYIAGSKEL--IDYLRSY 224 (349)
T ss_pred cCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc-cC-CEEECCHHH--HHHHHHh
Confidence 99999999999999999999998765443210 001123679999999999985 43 888888776 2222111
Q ss_pred ccCCCceEeecccccccccccccccccccCCC--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE
Q 038499 325 TCGGGTVNYVNGFNEKDTLYLEDIEERESGGT--PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK 402 (609)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt--p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~ 402 (609)
.. .. ...++ +.....+.+++.+. .. .+.+.++.+++++++.+.|.++ ++.
T Consensus 225 ~~----------------------~~-~~~~~~~~~~~~a~~~~l~~~--~~--~~~~~~~~~~~~~~l~~~l~~~-g~~ 276 (349)
T cd06454 225 AR----------------------GF-IFSTSLPPAVAAAALAALEVL--QG--GPERRERLQENVRYLRRGLKEL-GFP 276 (349)
T ss_pred ch----------------------hh-hccCCCCHHHHHHHHHHHHHH--hc--CHHHHHHHHHHHHHHHHHHHhc-CCc
Confidence 00 00 00122 22233334454443 22 3566788889999999999876 676
Q ss_pred EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHH
Q 038499 403 ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQI 482 (609)
Q Consensus 403 v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~ 482 (609)
++++. ...++++.... + .+..++.+.|.++ ||.++++.....++
T Consensus 277 ~~~~~---~~~~~~~~~~~-~----------------~~~~~~~~~L~~~-gI~~~~~~~~~~~~--------------- 320 (349)
T cd06454 277 VGGSP---SHIIPPLIGDD-P----------------AKAVAFSDALLER-GIYVQAIRYPTVPR--------------- 320 (349)
T ss_pred ccCCC---CCcEEEEeCCC-h----------------HHHHHHHHHHHhC-CceEEEecCCccCC---------------
Confidence 66542 22233333321 1 2467888888765 99998642111000
Q ss_pred HHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 483 RSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 483 ~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
..+++|++++++++++|+++++++|+++
T Consensus 321 -----------~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 348 (349)
T cd06454 321 -----------GTARLRISLSAAHTKEDIDRLLEALKEV 348 (349)
T ss_pred -----------CCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence 1378999999999999999999999865
|
The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life. |
| >cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-24 Score=229.44 Aligned_cols=346 Identities=18% Similarity=0.160 Sum_probs=223.9
Q ss_pred CCCCCChHHHHHHHHHhhcCCc--cCCCCCCchhhHHHHHHHHH-HHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHh
Q 038499 84 TASGRSLRYIENYIINNVLPFY--GNTHTCDSYVGQHTTNMVHE-ASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVM 160 (609)
Q Consensus 84 ~a~g~~~~~v~~ai~~~~~~~~--~n~~~~~~~~~~~~~~~~~e-~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l 160 (609)
++.++.++.|.+++.+.+...| ++++.. ++.+......+++ +++.+++++|++.. .|+++ +|+ .++..++..+
T Consensus 26 ~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~~~~~~~~l~~~~~~~~~~~~g~~~~-~v~~~-sgt-~a~~~~l~~l 101 (402)
T cd00378 26 ASENFTSPAVMEAMGSDLTNKYAEGYPGKR-YYGGCEYVDEIEDLAIERAKKLFGAEYA-NVQPH-SGS-QANLAVYFAL 101 (402)
T ss_pred ccCCcCCHHHHHHhcccccccccCCCCCCc-ccCCchHHHHHHHHHHHHHHHHhCCCce-eeecC-CcH-HHHHHHHHHh
Confidence 3446678889999887665444 555543 2334444444444 77888999999754 56555 676 5777777766
Q ss_pred cccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-----HHHcCceEEEEecCC---CCCCCHHHHHHHHhhhccCC
Q 038499 161 GIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-----WRQSLAEVVEIGLDD---DGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-----~~~~G~~vv~v~~~~---~g~ld~e~L~~al~~~~~~~ 232 (609)
+++|| .|++++++|+++... ++..|++++.++++. ++.+|++++++++.+ +
T Consensus 102 ---------------~~~Gd--~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~----~ 160 (402)
T cd00378 102 ---------------LEPGD--TIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALE----F 160 (402)
T ss_pred ---------------cCCCC--EEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHh----C
Confidence 47899 699999998876544 455688777776643 588999999999964 5
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
+++++++++++| |...|+++|+++||+||+++++|++|+.+............++|+++.|+||+++||.| |+++.+
T Consensus 161 ~~~~v~~~~~~~--~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~g-g~i~~~ 237 (402)
T cd00378 161 KPKLIVAGASAY--PRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRG-GLILTR 237 (402)
T ss_pred CCCEEEecCccc--CCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCc-eEEEec
Confidence 788888887765 56779999999999999999999998665432111111011569999999999988876 777777
Q ss_pred c-hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 313 K-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 313 ~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
+ ++ ++.+..... ....+++.......++.++......+.+...++..++++++
T Consensus 238 ~~~~--~~~l~~~~~------------------------~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l 291 (402)
T cd00378 238 KGEL--AKKINSAVF------------------------PGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKAL 291 (402)
T ss_pred cHHH--HHHHHHHhC------------------------ccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 6 55 222211000 00122332222222222221111124566778888999999
Q ss_pred HHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh
Q 038499 392 LERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL 471 (609)
Q Consensus 392 ~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l 471 (609)
.+.|.++ |+.++... ....++++.+.+ .. .+...+.+.| ++.||.++++.....+.+.
T Consensus 292 ~~~L~~~-g~~~~~~~--~~~~~v~v~~~~-~~---------------~~~~~~~~~l-~~~gI~v~~~~~p~~~~~~-- 349 (402)
T cd00378 292 AEALKER-GFKVVSGG--TDNHLVLVDLRP-KG---------------ITGKAAEDAL-EEAGITVNKNTLPWDPSSP-- 349 (402)
T ss_pred HHHHHhC-CCeEeecC--CCCeEEEEeCCc-cC---------------CCHHHHHHHH-HHcCcEEcCCcCCCCCCCC--
Confidence 9999887 78776321 223444444432 11 2456666766 5579999864322111000
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCC----CHHHHHHHHHHHHHHHHhcc
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYM----SNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~----t~eeid~ll~al~~v~~~~~ 526 (609)
..+.++|++++..+ +++|++++++.|++++...+
T Consensus 350 ---------------------~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~~~~ 387 (402)
T cd00378 350 ---------------------FVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALKDAE 387 (402)
T ss_pred ---------------------CCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHhccc
Confidence 02478999997644 79999999999999887765
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites. |
| >PRK03158 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.5e-24 Score=228.39 Aligned_cols=321 Identities=15% Similarity=0.104 Sum_probs=220.0
Q ss_pred ceEEecCCCCCC-ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASGR-SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g~-~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
..+.|+.+.... .++.+.+++.+.+......+ .....++|+.++++++++++ +|++| +|+++++..
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~~p-----------~~g~~~lr~~ia~~~~~~~~-~i~~t-~G~~~~l~~ 96 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLDELALYP-----------DGYAPELRTKVAKHLGVDEE-QLLFG-AGLDEVIQM 96 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHHhhcCC-----------CCcHHHHHHHHHHHhCCCHH-HEEEC-CCHHHHHHH
Confidence 345554332221 35568888776654211001 11256789999999999876 89998 899999988
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++..+ +++|| .|+++.+.|+.+...+...|++++.++.+ ++.+|+++++++++ ++++
T Consensus 97 ~~~~~---------------~~~gd--~v~~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~d~~~l~~~~~-----~~~~ 153 (359)
T PRK03158 97 ISRAL---------------LNPGT--NTVMAEPTFSQYRHNAIIEGAEVREVPLK-DGGHDLEAMLKAID-----EQTK 153 (359)
T ss_pred HHHHH---------------hCCCC--EEEEcCCCHHHHHHHHHHcCCeEEEEecC-CCCcCHHHHHHhcC-----CCCC
Confidence 87766 37888 69999999998888888899999999987 66789999999887 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHH--hCCeEEEeccccCCcc----cccCCCCCCCCccEEEEcCCCCCCCCC-CcEE
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYV----EIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGI 308 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~--~g~~vivD~A~~~~~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~ 308 (609)
++++++|+||||.+.+.++|.++++. +|+++|+|+++..... +..+......+..+++.|++|.+|.|+ .+|+
T Consensus 154 ~v~i~~p~NPtG~~~~~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~ 233 (359)
T PRK03158 154 IVWICNPNNPTGTYVNHEELLSFLESVPSHVLVVLDEAYYEYVTAEDYPDTLPLLEKYENLIVLRTFSKAYGLAALRVGY 233 (359)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchHhhcCCcccccHHHHHHhcCCEEEEEechHhhcCcchhheh
Confidence 99999999999999999999999887 5999999999753211 111110001134678889999998543 4799
Q ss_pred EEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 038499 309 LLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYI 388 (609)
Q Consensus 309 L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (609)
+++++++ ++.+.... ...+++.+.+.+ +.++ +.+....+.+.+..++.+
T Consensus 234 ~v~~~~~--~~~~~~~~--------------------------~~~~~~~~~q~~--~~~~-l~~~~~~~~~~~~~~~~~ 282 (359)
T PRK03158 234 GIASEEL--IEKLNIAR--------------------------PPFNTTRIAQYA--AIAA-LEDQAFLKECVEKNAEGL 282 (359)
T ss_pred hcCCHHH--HHHHHHhc--------------------------CCCCCCHHHHHH--HHHH-hcCHHHHHHHHHHHHHHH
Confidence 9999887 33332110 001222333322 1122 222223445556666777
Q ss_pred HHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh
Q 038499 389 ERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG 468 (609)
Q Consensus 389 ~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~ 468 (609)
+++.+.|++. ++.++.+ . +.+.+...+ .+..++++.|.+ .||.+++|..|.
T Consensus 283 ~~~~~~l~~~-~~~~~~~----~-g~~i~~~~~------------------~~~~~~~~~l~~-~gv~v~~g~~f~---- 333 (359)
T PRK03158 283 EQYYAFCKEY-GLFYYPS----Q-TNFIFVDTG------------------RDANELFEALLK-KGYIVRSGAALG---- 333 (359)
T ss_pred HHHHHHHHHC-CCeeCCC----c-CcEEEEECC------------------CCHHHHHHHHHH-CCeEEeeCCCCC----
Confidence 7888888776 6766533 2 334343333 246788888866 699999886553
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.++++||+++ +.+|+++++++|+++
T Consensus 334 -------------------------~~~~iRi~~~---~~~~~~~l~~al~~~ 358 (359)
T PRK03158 334 -------------------------FPTGVRITIG---LKEQNDKIIELLKEL 358 (359)
T ss_pred -------------------------CCCeEEEecC---CHHHHHHHHHHHHHh
Confidence 1489999987 899999999999875
|
|
| >PRK08056 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-24 Score=224.40 Aligned_cols=322 Identities=14% Similarity=0.019 Sum_probs=215.0
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
+++.|+.+... ++|+.+.+++.+.+... + .| .. ....++|+.++++++.+++ +|++| +|+++++..
T Consensus 21 ~~i~l~~~~~~~~~p~~~~~a~~~~~~~~--~----~y-~~----~~~~~lr~~ia~~~~~~~~-~i~it-~Ga~~~l~~ 87 (356)
T PRK08056 21 QLLDFSANINPLGMPVSLKRAIIDNLDCA--E----RY-PD----VEYRHLHQALARHHQVPAS-WILAG-NGETESIFA 87 (356)
T ss_pred hEEEeccccCCCCCCHHHHHHHHHHHHhc--c----cC-cC----ccHHHHHHHHHHHhCcChh-hEEEC-CCHHHHHHH
Confidence 46677665443 46677888887765432 1 01 11 1157899999999999887 89888 899999988
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhhccCCC
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~~~~~~ 233 (609)
++..+ .+|+ +|+ ..+.|..+...++..|++++.++.+++ ..+| +++++++. ++
T Consensus 88 ~~~~l----------------~~g~--viv-~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~-----~~ 142 (356)
T PRK08056 88 VVSGL----------------KPRR--AMI-VTPGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT-----PD 142 (356)
T ss_pred HHHHh----------------CCCC--EEE-eCCCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc-----CC
Confidence 87754 4565 444 455677777778889999999998753 3444 45556665 58
Q ss_pred ceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----cccc-CCCCCCCCccEEEEcCCCCCCCC-C
Q 038499 234 PILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEID-VRSGQTDGYDAIFLSTHKFLGGP-G 304 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id-~~~~~~~~~D~v~~S~hK~lggp-~ 304 (609)
++++++++++||||.+.+ +++|+++|++||+++|+|+++..-. ..++ +.. ...++++.|+||++|.| .
T Consensus 143 ~k~v~l~~p~NPTG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~---~~~~i~~~S~SK~~~~~G~ 219 (356)
T PRK08056 143 LDCLFLCTPNNPTGLLPERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLAD---NPHLWVLRSLTKFYAIPGL 219 (356)
T ss_pred CCEEEEeCCcCCCCCCCCHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhcc---CCCEEEEEechhhccCcch
Confidence 999999999999999999 7788999999999999999954211 0111 111 13568889999999955 4
Q ss_pred CcEEEEEec-hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHH
Q 038499 305 SPGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQ 383 (609)
Q Consensus 305 g~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~ 383 (609)
.+|++++++ ++ ++.+... ....+.+..+ ..+....+.+......++++
T Consensus 220 RiG~~v~~~~~~--~~~l~~~---------------------------~~~~~~~~~~--~~~a~~~l~~~~~~~~~~~~ 268 (356)
T PRK08056 220 RLGYLVNSDDAA--VARMRRQ---------------------------QMPWSINAFA--ALAGEVILQDRAYQQATWQW 268 (356)
T ss_pred hheeeecCCHHH--HHHHHHh---------------------------CCCCchhHHH--HHHHHHHhCCHHHHHHHHHH
Confidence 599999853 44 2222100 0011222222 22222222222223455677
Q ss_pred HHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCccc
Q 038499 384 EETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
.++.++++.+.|+.++++.+..+ ...++ |...+ .+...+++.|.+ .||.+++|..+
T Consensus 269 ~~~~r~~l~~~L~~~~~~~~~~~----~~~~~-~~~~~------------------~~~~~~~~~l~~-~gI~v~~~~~f 324 (356)
T PRK08056 269 LAEEGARFYQALCALPLLTVWPG----RANYL-FLRCE------------------RPDIDLQRALLT-QRILIRSCANY 324 (356)
T ss_pred HHHHHHHHHHHHhcCCCcEEcCC----CCcEE-EEEcC------------------CChHHHHHHHHH-CCeEEEECCCC
Confidence 77888899999988888876533 23333 33322 134678888875 69999988755
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+. .++++||+++ +.++.++++++|+.+.+.
T Consensus 325 ~~~---------------------------~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 355 (356)
T PRK08056 325 PGL---------------------------DSRYYRVAIR---SAAENERLLAALRNVLTG 355 (356)
T ss_pred CCC---------------------------CCCEEEEEEc---CHHHHHHHHHHHHHHHcc
Confidence 311 2579999997 889999999999987653
|
|
| >PRK00950 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-24 Score=226.02 Aligned_cols=323 Identities=16% Similarity=0.101 Sum_probs=218.4
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
.++.++.+.+. +.++.+.+++.+.+......+.. ...++|+.+++++|++++ +|+++++|+++++..
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~-----------~~~~lr~~ia~~~~~~~~-~i~~~~~Ga~~~i~~ 102 (361)
T PRK00950 35 SIIKLGSNENPLGPSPKAVEAIEKELSKIHRYPEP-----------DAPELREALSKYTGVPVE-NIIVGGDGMDEVIDT 102 (361)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHhhcCCCCC-----------CHHHHHHHHHHHhCCCHH-HEEEeCCCHHHHHHH
Confidence 56777544322 23455677776665432211111 137789999999999876 888856899999988
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++..+ +++|| .|+++.+.|+.+...++..|++++.++.+.++.+|+++|+++++ ++++
T Consensus 103 ~~~~~---------------~~~gd--~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~ 160 (361)
T PRK00950 103 LMRTF---------------IDPGD--EVIIPTPTFSYYEISAKAHGAKPVYAKREEDFSLDVDSVLNAIT-----EKTK 160 (361)
T ss_pred HHHHh---------------cCCCC--EEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHhc-----cCCC
Confidence 87765 37888 68888888887777788899999999977777899999999987 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCC-CCCccEEEEcCCCCCCCCC-CcEEEEEec
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQ-TDGYDAIFLSTHKFLGGPG-SPGILLMTK 313 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~-~~~~D~v~~S~hK~lggp~-g~G~L~~~~ 313 (609)
++++++++||||.+.|.++|.++|+++|+++++|+++.... ..++.... .....+++.|++|.+|.|+ .+|++++++
T Consensus 161 ~v~~~~p~nptG~~~~~~~l~~l~~~~~~~li~De~y~~~~-~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~~~~~~ 239 (361)
T PRK00950 161 VIFLCTPNNPTGNLIPEEDIRKILESTDALVFVDEAYVEFA-EYDYTPLALEYDNLIIGRTFSKVFGLAGLRIGYGFVPE 239 (361)
T ss_pred EEEEeCCCCCCCCCcCHHHHHHHHHHCCcEEEEECchhhhC-ccchHHHHHhcCCEEEEEeehHhhcCchhhcchhcCCH
Confidence 99999999999999999999999999999999999986422 11111110 0122366779999998554 589999988
Q ss_pred hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 038499 314 ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALE 393 (609)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~ 393 (609)
++. ..+.... .. .+.+.+.+ .+++.++ .+....+...++.++.++++.+
T Consensus 240 ~~~--~~~~~~~------------------------~~--~~~~~~~~--~~a~~~l-~~~~~~~~~~~~~~~~r~~l~~ 288 (361)
T PRK00950 240 WLI--DYYMRAK------------------------TP--FSLTRLSQ--AAAIAAL-SDKEYIEKSIEHGIKSREYLYN 288 (361)
T ss_pred HHH--HHHHHhc------------------------CC--CCCCHHHH--HHHHHHh-cCHHHHHHHHHHHHHHHHHHHh
Confidence 772 2221110 00 01111221 1122222 1212245555666667777777
Q ss_pred HhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcC
Q 038499 394 RLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 394 ~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~ 473 (609)
.|. +.+..+ ..+++++.+ + . .+..++++.|.+ .||.+++|..+.+
T Consensus 289 ~l~----~~~~~~----~~~~i~~~~-~-~----------------~~~~~~~~~l~~-~gv~v~~~~~f~~-------- 333 (361)
T PRK00950 289 ELP----FKVYPS----EANFVLVDV-T-P----------------MTAKEFCEELLK-RGVIVRDCTSFRG-------- 333 (361)
T ss_pred hcC----eeECCC----cceEEEEEC-C-C----------------CCHHHHHHHHHH-CCEEEeeCCccCC--------
Confidence 665 444322 234455444 3 2 367889998876 5999997654321
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
..++++|||++ +.+|+++++++|+.++
T Consensus 334 -------------------~~~~~lRis~~---~~~~~~~l~~~L~~il 360 (361)
T PRK00950 334 -------------------LGDYYIRVSIG---TFEENERFLEILKEIV 360 (361)
T ss_pred -------------------CCCCeEEEECC---CHHHHHHHHHHHHHHh
Confidence 02579999997 8899999999999875
|
|
| >TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=224.19 Aligned_cols=316 Identities=16% Similarity=0.147 Sum_probs=217.8
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
++.|+.|.+++.+....+ + ...+.++++++.+++++|++ +++++ +|+|++++.++.++.
T Consensus 23 s~~~~~v~~a~~~~~~~~----~--------~~~~~~~~~~~~~a~~~g~~---~~~~~-~g~t~al~~al~al~----- 81 (363)
T TIGR01437 23 STVSDEVADAQKRGAQNY----F--------EIKELVNKTGEYIANLLGVE---DAVIV-SSASAGIAQSVAAVI----- 81 (363)
T ss_pred CCCCHHHHHHHHHHHhcC----C--------CHHHHHHHHHHHHHHhhCCC---eEEEE-cCHHHHHHHHHHHHh-----
Confidence 457888999998875422 1 13577899999999999985 57888 677778888877763
Q ss_pred hHHHHHHhhhcCCC-------------ceEEEECCCCccch----HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhc
Q 038499 167 ILREKLIKCLRDEE-------------RWVVFVGPHEHHSN----LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYK 229 (609)
Q Consensus 167 ~~~~~~~~~l~~gd-------------~~~Vlv~~~~h~s~----~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~ 229 (609)
++|| ..+|+++.+.+..+ ....+..|+++++++.+ +.+|+++++++|+
T Consensus 82 ----------~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~~~v~v~~~--~~~d~~~le~ai~--- 146 (363)
T TIGR01437 82 ----------TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGGKVVEAGYA--NECSAEQLEAAIT--- 146 (363)
T ss_pred ----------cCCCcchhhcccccccccceEEEECccchhcCCchHHHHHhcCCeEEEEcCC--CCCCHHHHHHhcC---
Confidence 4554 11577765322222 23456689999999863 5699999999998
Q ss_pred cCCCceEEE-EecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEE
Q 038499 230 DAKRPILGS-FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGI 308 (609)
Q Consensus 230 ~~~~~~lv~-~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (609)
++|++++ +++++|++|.+.|+++|+++||+||+++++|+||+.. +......++|++++|+||+++||. .|+
T Consensus 147 --~~t~ai~~v~~~~~~~g~~~~~~~i~~~a~~~gi~vivD~a~~~~-----~~~~~~~g~D~~~~S~~K~l~gp~-~G~ 218 (363)
T TIGR01437 147 --EKTAAILYIKSHHCVQKSMLSVEDAAQVAQEHNLPLIVDAAAEED-----LQKYYRLGADLVIYSGAKAIEGPT-SGL 218 (363)
T ss_pred --hhceEEEEEecCCCCcCCcCCHHHHHHHHHHcCCeEEEECCCCCc-----hHHHHHcCCCEEEEeCCcccCCCc-eEE
Confidence 6888555 6777899999999999999999999999999999732 221001267999999999999998 699
Q ss_pred EEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 038499 309 LLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYI 388 (609)
Q Consensus 309 L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (609)
++.++++ ++.+.+...|. ....+.|+.++.++ .++++++. ..+.+.+.++.+ .+
T Consensus 219 l~~~~~~--i~~~~~~~~~~--------------------~~~~~~~~~~~~gl-~aAl~~~~--~~~~~~~~~~~~-~~ 272 (363)
T TIGR01437 219 VLGKKKY--IEWVKLQSKGI--------------------GRAMKVGKENILGL-TAALEQYL--STGKESGAEMVA-KL 272 (363)
T ss_pred EEEcHHH--HHHHHhccCCC--------------------cceeccCHHHHHHH-HHHHHHHH--ccCcccHHHHHH-HH
Confidence 9988777 34443332221 12234566565444 34555553 356666665555 46
Q ss_pred HHHHHHhCCCCceEEeCCCCCCCc----ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcC--cEeccCcc
Q 038499 389 ERALERLLPNQNIKILGNTSTKRQ----AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFG--IQARGGCA 462 (609)
Q Consensus 389 ~~~~~~L~~~p~i~v~~~~~~~r~----~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~G--I~v~~G~~ 462 (609)
+++.++|.++|+++++.+.+.... ..++|... +..++..++.+.|.+ .+ |.+|.
T Consensus 273 ~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~----------------~~g~~~~~l~~~L~~-~~~~I~~r~--- 332 (363)
T TIGR01437 273 TPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDES----------------ELGMTAADVVQALRQ-GEPAIYTRG--- 332 (363)
T ss_pred HHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEecc----------------CCCCCHHHHHHHHhc-CCCCEEEee---
Confidence 689999999999998854221111 12233321 112688999999964 35 77763
Q ss_pred cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 463 CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 463 ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+.. ..+.+|+++.. ++++|++.++++|+++
T Consensus 333 ----~~~------------------------~~~~~~l~~~~-~~~~e~~~~~~~l~~~ 362 (363)
T TIGR01437 333 ----YKA------------------------NEGIIEIDPRS-VTGGQLDIIVERIREI 362 (363)
T ss_pred ----eee------------------------cCCeEEEEeec-CCHHHHHHHHHHHHHh
Confidence 100 25889999975 5699999999999876
|
This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation. |
| >cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=224.78 Aligned_cols=321 Identities=16% Similarity=0.054 Sum_probs=216.4
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
...++++.+++++|.+ +++++++|+. ++..++..+. +++|| .|+++.++|+++..++...
T Consensus 19 ~~~~~~~~la~~~~~~---~~~~~~sgt~-al~~~l~~l~--------------~~~gd--~vl~~~~~~~~~~~~~~~~ 78 (352)
T cd00616 19 KVREFEKAFAEYLGVK---YAVAVSSGTA-ALHLALRALG--------------IGPGD--EVIVPSFTFVATANAILLL 78 (352)
T ss_pred HHHHHHHHHHHHhCCC---eEEEECCHHH-HHHHHHHHcC--------------CCCCC--EEEeCCcchHHHHHHHHHc
Confidence 4678999999999973 5777766655 6777777663 36788 7999999999999999999
Q ss_pred CceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc
Q 038499 202 LAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID 280 (609)
Q Consensus 202 G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id 280 (609)
|++++.+++++ ++.+|+++|+++++ ++++++++++ ++|.+.|+++|.++|+++|+++|+|++|+.|....+
T Consensus 79 g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~---~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~ 150 (352)
T cd00616 79 GATPVFVDIDPDTYNIDPELIEAAIT-----PRTKAIIPVH---LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKG 150 (352)
T ss_pred CCeEEEEecCCCcCCcCHHHHHHhcC-----cCCeEEEEEC---CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECC
Confidence 99999999987 78899999999986 6889888764 799999999999999999999999999998865432
Q ss_pred CCCCCCCCccEEEEcCC--CCCCCCCCcEEEEEec-hhhccCCCCCCccCCCceEeecccccccccccccccccccCCCh
Q 038499 281 VRSGQTDGYDAIFLSTH--KFLGGPGSPGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP 357 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~h--K~lggp~g~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp 357 (609)
. ... ...|+.++|+| |+++++.| |+++.++ ++ ++.+++...++....+ ..+ .........+++
T Consensus 151 ~-~~~-~~~d~~~~S~~~~K~~~~~~g-g~~~~~~~~~--~~~~~~~~~~~~~~~~--------~~~-~~~~~~~~~~~~ 216 (352)
T cd00616 151 R-KVG-TFGDAGAFSFHPTKNLTTGEG-GAVVTNDEEL--AERARLLRNHGRDRDR--------FKY-EHEILGYNYRLS 216 (352)
T ss_pred E-Ecc-cCcceeEEcCCCCCCCcccCc-eEEEECCHHH--HHHHHHHHHcCCCCCC--------Ccc-ccceeeeccCcC
Confidence 1 111 12477777755 99976554 7777764 44 2333332222221000 000 000111122333
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC--CCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 358 QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTS--TKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 358 ~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~--~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
++... +.+. ...+.+.+.++.+++.+++.+.|.++++++++.+.. ....++++|.+.. .
T Consensus 217 ~~~aa----~~~~--~l~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~-~------------ 277 (352)
T cd00616 217 EIQAA----IGLA--QLEKLDEIIARRREIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDP-E------------ 277 (352)
T ss_pred HHHHH----HHHH--HHHhhHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECC-c------------
Confidence 33322 2221 223467788888999999999999999999887532 1234566666642 1
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh-------cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL-------LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSN 508 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l-------l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ 508 (609)
...+..++.+.|.+ .||.++ ..|.+...... ..-+.+.++.+ ..+.+|+++++++|+
T Consensus 278 --~~~~~~~v~~~L~~-~gI~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~-----------~~~~l~l~~~~~~t~ 341 (352)
T cd00616 278 --AGESRDELIEALKE-AGIETR--VHYPPLHHQPPYKKLLGYPPGDLPNAEDL-----------AERVLSLPLHPSLTE 341 (352)
T ss_pred --CCCCHHHHHHHHHH-CCCCee--eecCccccCHhhhhccCCCcCCChHHHHH-----------HhCeEEccCCCCCCH
Confidence 01467899999965 599665 34442211100 00111222222 247999999999999
Q ss_pred HHHHHHHHHHH
Q 038499 509 EEFEFTLEALE 519 (609)
Q Consensus 509 eeid~ll~al~ 519 (609)
+|+++++++|+
T Consensus 342 ~di~~i~~~l~ 352 (352)
T cd00616 342 EEIDRVIEALR 352 (352)
T ss_pred HHHHHHHHHhC
Confidence 99999999874
|
AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein |
| >PRK06225 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-24 Score=227.82 Aligned_cols=339 Identities=13% Similarity=0.059 Sum_probs=226.6
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
.+|.++.+.+. +.++.+.+++.+.+.....+. + .......++|+.+++++|.+++ +|+++ +|+++++..
T Consensus 29 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~~~----y----~~~~g~~~lr~~ia~~l~~~~~-~v~~~-~g~t~al~~ 98 (380)
T PRK06225 29 EMIWMGQNTNHLGPHEEVREAMIRCIEEGEYCK----Y----PPPEGFPELRELILKDLGLDDD-EALIT-AGATESLYL 98 (380)
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcCCCCC----C----CCCcchHHHHHHHHHhcCCCCC-cEEEe-CCHHHHHHH
Confidence 57788765443 456778888877765321111 1 1122367799999999999887 89998 788889998
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC---CCCCCHHHHHHHHhhhccCC
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD---DGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~---~g~ld~e~L~~al~~~~~~~ 232 (609)
++..+ +.+|| .|+++.+.|+.....+...|++++.++++. ++.+|+++++++++ +
T Consensus 99 ~~~~~---------------~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~-----~ 156 (380)
T PRK06225 99 VMRAF---------------LSPGD--NAVTPDPGYLIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMD-----E 156 (380)
T ss_pred HHHHh---------------cCCCC--EEEEcCCCCcchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcC-----C
Confidence 88776 36787 688888888877777788999999998742 35799999999987 5
Q ss_pred CceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccC---CcccccCCCCCCCCccEEEEcCCCCCCCCC-C
Q 038499 233 RPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG---PYVEIDVRSGQTDGYDAIFLSTHKFLGGPG-S 305 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~---~~~~id~~~~~~~~~D~v~~S~hK~lggp~-g 305 (609)
+++++++++++||||.+.+ +++|+++|++||+++|+|+++.. +.... .... ....+++.|++|++|.|+ .
T Consensus 157 ~~~~v~l~~p~NptG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~--~~~~-~~~~i~~~s~SK~~g~~G~R 233 (380)
T PRK06225 157 NTRLIYLIDPLNPLGSSYTEEEIKEFAEIARDNDAFLLHDCTYRDFAREHTLA--AEYA-PEHTVTSYSFSKIFGMAGLR 233 (380)
T ss_pred CceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCcEEEEehhHHHHhccCCch--hhcC-CCCEEEEeechhhcCCccce
Confidence 7899999999999999876 78899999999999999998641 11111 1111 134577789999997342 3
Q ss_pred cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 038499 306 PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (609)
+|++++++++ ++.+.+.. ....++..+.+.+. ...+.......+.+.+..+
T Consensus 234 iG~i~~~~~l--~~~~~~~~-------------------------~~~~~~~~~~~~~a--~~~l~~~~~~~~~~~~~~~ 284 (380)
T PRK06225 234 IGAVVATPDL--IEVVKSIV-------------------------INDLGTNVIAQEAA--IAGLKVKDEWIDRIRRTTF 284 (380)
T ss_pred eEEEecCHHH--HHHHHHHH-------------------------hcccCCCHHHHHHH--HHHHhcchHHHHHHHHHHH
Confidence 7999999887 33332110 00122333333221 1111111112345555556
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
++.+.+.+.|++++++.+.... ....++++.+.+ . .++...+.+.|. +.||.+++|..|..
T Consensus 285 ~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~-~---------------~~~~~~l~~~l~-~~gi~v~~g~~~~~ 345 (380)
T PRK06225 285 KNQKLIKEAVDEIEGVFLPVYP--SHGNMMVIDISE-A---------------GIDPEDLVEYLL-ERKIFVRQGTYTSK 345 (380)
T ss_pred HHHHHHHHHHHhCcCCccccCC--CCCeEEEEEccc-c---------------cCCHHHHHHHHH-HCCEEEcCCcccCc
Confidence 6677777888877675432111 123344333322 1 146778888886 46999999876542
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
+. .++++|++++ .+++|+++++++|+.+++..+
T Consensus 346 ~~--------------------------~~~~iR~s~~--~~~e~l~~~~~~l~~~~~~~~ 378 (380)
T PRK06225 346 RF--------------------------GDRYIRVSFS--IPREQVEVFCEEFPDVVETLR 378 (380)
T ss_pred CC--------------------------CCceEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 11 1479999997 378999999999999987654
|
|
| >PRK07681 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=225.91 Aligned_cols=333 Identities=11% Similarity=0.068 Sum_probs=218.3
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----C--CCCCCcEEEeCChHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----G--GGQEDAMIFCGSGTT 150 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g--~~~~~~vift~sGtt 150 (609)
++.++.+... +.++.+.+++.+.+... ....+. ..+ ..++|+.|++++ | .+++++|++| +|++
T Consensus 34 ~i~l~~g~p~~~~~~~~~~~~~~~~~~~----~~~~y~-~~G----~~~lr~aia~~~~~~~g~~~~~~~~I~it-~G~~ 103 (399)
T PRK07681 34 MIDLSIGNPDMPPADFVREEMVHTANQK----ESYGYT-LSG----IQEFHEAVTEYYNNTHNVILNADKEVLLL-MGSQ 103 (399)
T ss_pred eEEeCCCCCCCCCCHHHHHHHHHHHhcc----ccCCCC-CCC----cHHHHHHHHHHHHHHhCCCCCCCCeEEEC-CCcH
Confidence 4444433322 34566777777655421 110010 112 334555555554 4 3552378888 8999
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhh
Q 038499 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELY 228 (609)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~ 228 (609)
+++..++.++ +++|| .|+++.+.|+.+...++..|++++.++++++ +.+|++++++++.
T Consensus 104 ~al~~~~~~~---------------~~~Gd--~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~~~-- 164 (399)
T PRK07681 104 DGLVHLPMVY---------------ANPGD--IILVPDPGYTAYETGIQMAGATSYYMPLKKENDFLPDLELIPEEIA-- 164 (399)
T ss_pred HHHHHHHHHh---------------CCCCC--EEEECCCCccchHHHHHhcCCEEEEEecCCCCCCcCCHHHHHHhcc--
Confidence 9999988876 37898 6999999999999889999999999999754 4679999999886
Q ss_pred ccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCC-CCCccEEEEcCCCCC
Q 038499 229 KDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQ-TDGYDAIFLSTHKFL 300 (609)
Q Consensus 229 ~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~-~~~~D~v~~S~hK~l 300 (609)
++++++++++|+||||.+.+ +++|+++|++||+++|+|++++... ....+.... .....+++.|++|.+
T Consensus 165 ---~~~k~v~l~~P~NPTG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 241 (399)
T PRK07681 165 ---DKAKMMILNFPGNPVPAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSY 241 (399)
T ss_pred ---ccceEEEEeCCCCCcCcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeeccccc
Confidence 57999999999999999998 6678889999999999999976321 112222111 012357778999999
Q ss_pred CCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHH
Q 038499 301 GGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHE 378 (609)
Q Consensus 301 ggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~ 378 (609)
|.| ..+|++++++++ ++.+... ......+++.+.+. ++..++ .+ ....+
T Consensus 242 ~~~GlRiG~~i~~~~l--~~~~~~~------------------------~~~~~~~~s~~~q~--~~~~~l-~~~~~~~~ 292 (399)
T PRK07681 242 SLAGSRIGYMIGNEEI--VRALTQF------------------------KSNTDYGVFLPIQK--AACAAL-RNGAAFCE 292 (399)
T ss_pred CCccceeEEEecCHHH--HHHHHHH------------------------HhhcccCCCHHHHH--HHHHHH-hCcHHHHH
Confidence 844 349999998887 3332111 00001122233332 122222 12 11234
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEec
Q 038499 379 VIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQAR 458 (609)
Q Consensus 379 ~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~ 458 (609)
..+++.++.++.+.+.|++. ++++..+ ..+++.|...+ .. .+..++++.|.++.||.++
T Consensus 293 ~~~~~~~~~~~~l~~~L~~~-g~~~~~p----~~g~f~~~~l~-~~---------------~~~~~~~~~l~~~~gv~v~ 351 (399)
T PRK07681 293 KNRGIYQERRDTLVDGFRTF-GWNVDKP----AGSMFVWAEIP-KG---------------WTSLSFAYALMDRANVVVT 351 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHC-CCcccCC----CeeeEEEEECC-CC---------------CCHHHHHHHHHHhCCEEEe
Confidence 55566677778888888876 6766544 33555555444 21 3567788888776799999
Q ss_pred cCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 459 GGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 459 ~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+|..|..+ .++++||+++ .++++++.+++.|+.+
T Consensus 352 pg~~f~~~---------------------------~~~~iRis~~--~~~~~~~~~l~~l~~~ 385 (399)
T PRK07681 352 PGHAFGPH---------------------------GEGFVRIALV--QDEEVLQQAVENIRNS 385 (399)
T ss_pred CChhhCcC---------------------------CCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence 88765411 1489999998 4789999999998773
|
|
| >PRK04870 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=225.56 Aligned_cols=325 Identities=15% Similarity=0.080 Sum_probs=226.1
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
++++++|.+... +.|+.+.+++.+.+... ... .|.. . ...++|+.+++++|.+++++|+++ +|+++++.
T Consensus 26 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~Y~~-~----~~~~lr~~ia~~~~~~~~~~I~~t-~G~~~~i~ 95 (356)
T PRK04870 26 TGMVKLDAMENPYRLPAELRAELGERLAEV---ALN-RYPD-P----RAAALKAALRAAMGVPAGADVLLG-NGSDELIQ 95 (356)
T ss_pred CCceeCcCCCCCCCCCHHHHHHHHHHhhcc---ccc-cCCC-C----CHHHHHHHHHHHhCcCCCCcEEEc-CCHHHHHH
Confidence 368889877665 46778888888766421 001 0111 0 146789999999998754478887 89999999
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
.+..++ +++|| .|+++.+.|..+...++..|++++.+++++++.+|+++|++++.. .++
T Consensus 96 ~~~~~~---------------~~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~----~~~ 154 (356)
T PRK04870 96 LLALAC---------------AKPGA--TVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAE----HRP 154 (356)
T ss_pred HHHHHh---------------cCCCC--EEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhc----CCC
Confidence 888776 37888 699999999988888889999999999988888999999999974 478
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc-c-c-cCCCCCCCCccEEEEcCCCCCCCCC-CcEEEE
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV-E-I-DVRSGQTDGYDAIFLSTHKFLGGPG-SPGILL 310 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~-~-i-d~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~ 310 (609)
+++++++++||||.+.+.+++.++++..++++|+|+++..-.. . . .+.. ....+++.|++| +|.|+ .+|+++
T Consensus 155 ~~v~l~~p~NPtG~~~~~~~~~~i~~~~~~~ii~De~y~~~~~~~~~~~~~~---~~~vi~~~S~SK-~~~~GlRiG~~i 230 (356)
T PRK04870 155 ALVFLAYPNNPTGNLFDDADVERIIEAAPGLVVVDEAYQPFAGDSWLPRLAR---FPNLLVMRTVSK-LGLAGLRLGYLA 230 (356)
T ss_pred CEEEEcCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCchhhcCcchHHHHhh---CCCEEEEecchh-hhhHHHhhhhhh
Confidence 9999999999999999999988888877899999999642111 1 0 1111 123577889999 55443 499999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (609)
+++++ ++.+..... ..+.+.+.+.+ + ...+++....+...++.++.+++
T Consensus 231 ~~~~~--i~~~~~~~~--------------------------~~~~~~~~q~~--a-~~~l~~~~~~~~~~~~~~~~~~~ 279 (356)
T PRK04870 231 GHPAW--IAELDKVRP--------------------------PYNVNVLTQAT--A-LFALEHVDVLDAQAAQLRAERTR 279 (356)
T ss_pred CCHHH--HHHHHHccC--------------------------CCcCCHHHHHH--H-HHHHhCHHHHHHHHHHHHHHHHH
Confidence 98877 333321100 01111222221 1 11222212255666777888889
Q ss_pred HHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhh
Q 038499 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470 (609)
Q Consensus 391 ~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ 470 (609)
+.+.|+.++++.+..+ ...++++. .+ +...+.+.|. +.||.+++|..+.+.
T Consensus 280 l~~~L~~~~~~~~~~~----~~~~~~~~-~~-------------------~~~~~~~~l~-~~gI~v~~~~~f~~~---- 330 (356)
T PRK04870 280 LAAALAALPGVTVFPS----AANFILVR-VP-------------------DAAAVFDGLK-TRGVLVKNLSGMHPL---- 330 (356)
T ss_pred HHHHHHhCCCcEECCC----CCeEEEEE-CC-------------------CHHHHHHHHH-HCCEEEEECCCCCCC----
Confidence 9999988888876432 23344443 32 2467777775 569999976544210
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.++++||+++ +.+++++++++|+++
T Consensus 331 -----------------------~~~~iRis~~---~~~~~~~l~~al~~~ 355 (356)
T PRK04870 331 -----------------------LANCLRVTVG---TPEENAQFLAALKAA 355 (356)
T ss_pred -----------------------CCCeEEEeCC---CHHHHHHHHHHHHHh
Confidence 2589999998 899999999999875
|
|
| >KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.8e-23 Score=203.35 Aligned_cols=334 Identities=18% Similarity=0.148 Sum_probs=253.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+.....+++.++++-++..|........++.|+|+. ++..++.-+ +.|||+ |++....-.+.
T Consensus 44 ~sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~-g~E~al~N~---------------lePgd~--vLv~~~G~wg~ 105 (385)
T KOG2862|consen 44 MSPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHS-GWEAALVNL---------------LEPGDN--VLVVSTGTWGQ 105 (385)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcc-hHHHHHHhh---------------cCCCCe--EEEEEechHHH
Confidence 455677889999999999998876656778778777 455544332 589995 44443333332
Q ss_pred --HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC-HHHHHHHHHHhCCeEEEecc
Q 038499 195 --LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD-TRSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 195 --~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d-l~~I~~la~~~g~~vivD~A 271 (609)
....++.|++|..|+.+....+.++.+++++.+ .++++++++|..+.||++.| ++.+.++||+|+++++||..
T Consensus 106 ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsq----h~p~~vfv~hgdsSTgV~q~~~~~~g~lc~k~~~lllVD~V 181 (385)
T KOG2862|consen 106 RAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQ----HKPKAVFVTHGDSSTGVLQDLLAISGELCHKHEALLLVDTV 181 (385)
T ss_pred HHHHHHHhhCceeeEEecCcccCccHHHHHHHHHh----cCCceEEEEecCccccccchHHHHHHHHhhcCCeEEEEech
Confidence 345678999999999888888999999999997 68999999999999999999 67788999999999999999
Q ss_pred ccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccc
Q 038499 272 ASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEER 351 (609)
Q Consensus 272 ~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r 351 (609)
++.+..++.|.++ ++|+..+..+|.+|+|.|++++..++.. +.++.....+ .+.+...+..-...|..+.+.+
T Consensus 182 aSlggt~F~mDew---gVDvaytgSQKaL~aP~GLsiisfS~ka--~~~~~~rK~~--~~~~yFd~~~~~~~wgc~~e~~ 254 (385)
T KOG2862|consen 182 ASLGGTEFEMDEW---GVDVAYTGSQKALGAPAGLSIISFSDKA--LEAIRDRKTK--PVSFYFDILRLGNFWGCDGEPR 254 (385)
T ss_pred hhcCCccceehhh---cccEEEecchhhcCCCCCcceeecCHHH--HHHHhhccCC--ceEEEEeHHhhcchhccCCccc
Confidence 9999999999997 9999999999999999999999998776 2222211111 1111111111122233334556
Q ss_pred ccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 352 ESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 352 ~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
....||++..+ ++++++... +.|.+++.++.+++.++++..|+++ |+++.......|+|.+.-...+ ..
T Consensus 255 ~yhhT~pv~lly~Lr~AL~~I~--eeGL~~~~~rH~e~s~~l~~~l~~~-GLq~fv~~e~~rlptvttv~vp-~g----- 325 (385)
T KOG2862|consen 255 AYHHTPPVQLLYSLRAALALIA--EEGLENSWRRHREMSKWLKLSLEAL-GLQLFVVDEELRLPTVTTVKVP-YG----- 325 (385)
T ss_pred ccccCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHh-CccceecChhhccCcceeeecC-CC-----
Confidence 66778876554 578888774 4599999999999999999999987 8887766556788877766555 22
Q ss_pred CCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCH
Q 038499 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSN 508 (609)
Q Consensus 430 ~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~ 508 (609)
.+..+|+..+.+.+++.+.+|..-. .+..+||.+ +...+.
T Consensus 326 ----------vDw~dVv~~~~~~~~vei~gglg~~-----------------------------~gKv~RIGl~gcna~~ 366 (385)
T KOG2862|consen 326 ----------VDWKDVVAYAMSHYVVEIGGGLGPT-----------------------------VGKVFRIGLLGCNANV 366 (385)
T ss_pred ----------CCHHHHHHHHHHhcCEEeccccCCC-----------------------------cccEEEEEEeeccCCc
Confidence 6889999999999999988764322 247899996 666688
Q ss_pred HHHHHHHHHHHHHHHhc
Q 038499 509 EEFEFTLEALEFIAIYG 525 (609)
Q Consensus 509 eeid~ll~al~~v~~~~ 525 (609)
+-++..++.|+..+.+.
T Consensus 367 e~i~~v~~ll~~alq~~ 383 (385)
T KOG2862|consen 367 EYIDNVVELLKLALQRK 383 (385)
T ss_pred HHHHHHHHHHHHHHhhc
Confidence 88999999998877653
|
|
| >PRK08960 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=225.80 Aligned_cols=335 Identities=13% Similarity=0.030 Sum_probs=220.6
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----C--CCCCCcEEEeCChH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----G--GGQEDAMIFCGSGT 149 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g--~~~~~~vift~sGt 149 (609)
+.++++.+..+ +.|+.+.+++.+.+... . . .|.... ...++|+.+++++ | ++++ +|++| +|+
T Consensus 33 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~---~-~-~Y~~~~----g~~~lr~~ia~~~~~~~g~~~~~~-~i~it-~G~ 101 (387)
T PRK08960 33 DVIHLEIGEPDFTTAEPIVAAGQAALAAG---H-T-RYTAAR----GLPALREAIAGFYAQRYGVDVDPE-RILVT-PGG 101 (387)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhcC---C-C-ccCCCC----CCHHHHHHHHHHHHHHhCCCCChh-hEEEc-cCc
Confidence 57899988877 56888999988876521 1 1 121111 2345666666665 3 5565 89998 889
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhh
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLEL 227 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~ 227 (609)
+++|..++.++ +++|| .|+++.++|+.+...++..|++++.++++.+ +.+|+++|+++++
T Consensus 102 ~~al~~~~~~~---------------~~~gd--~vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~- 163 (387)
T PRK08960 102 SGALLLASSLL---------------VDPGK--HWLLADPGYPCNRHFLRLVEGAAQLVPVGPDSRYQLTPALVERHWN- 163 (387)
T ss_pred HHHHHHHHHHh---------------cCCCC--EEEEcCCCCcchHHHHHhcCCeEEEEecCcccCCCCCHHHHHHHhC-
Confidence 99999988876 37888 6999999999999999999999999998754 4789999999887
Q ss_pred hccCCCceEEEEecccCccccccCHH---HHHHHHHHhCCeEEEeccccCCcc---cccCCCCCCCCccEEEEcCCCCCC
Q 038499 228 YKDAKRPILGSFSACSNVTGIYSDTR---SIARLLHQYGGFACFDFAASGPYV---EIDVRSGQTDGYDAIFLSTHKFLG 301 (609)
Q Consensus 228 ~~~~~~~~lv~~s~~sn~TG~~~dl~---~I~~la~~~g~~vivD~A~~~~~~---~id~~~~~~~~~D~v~~S~hK~lg 301 (609)
++++++++++++||||.+.+.+ +|+++|++||+++++|+++..-.. ...+... ....+++.|++|.+|
T Consensus 164 ----~~~~~i~i~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~~~~~--~~~vi~~~S~SK~~g 237 (387)
T PRK08960 164 ----ADTVGALVASPANPTGTLLSRDELAALSQALRARGGHLVVDEIYHGLTYGVDAASVLEV--DDDAFVLNSFSKYFG 237 (387)
T ss_pred ----ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhc--cCCEEEEeecccccC
Confidence 5788999999999999999854 577789999999999999653211 1111111 123467789999998
Q ss_pred CCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh--cCHH
Q 038499 302 GPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY--IGHE 378 (609)
Q Consensus 302 gp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~--~g~~ 378 (609)
.|+ .+|++++++++ ++.+... ......+++.+.+.+ +..++ .+. ...+
T Consensus 238 ~~GlRiG~~~~~~~~--~~~~~~~------------------------~~~~~~~~s~~~q~a--~~~~l-~~~~~~~l~ 288 (387)
T PRK08960 238 MTGWRLGWLVAPPAA--VPELEKL------------------------AQNLYISASTPAQHA--ALACF-EPETLAILE 288 (387)
T ss_pred CcccEEEEEEcCHHH--HHHHHHH------------------------HhhhccCCCHHHHHH--HHHHh-hcCcHHHHH
Confidence 453 49999999887 3332111 011112233333322 12222 111 1234
Q ss_pred HHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEec
Q 038499 379 VIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQAR 458 (609)
Q Consensus 379 ~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~ 458 (609)
.+++..++.++.+.+.|+.+ ++.+... +..+++.|.-.+ .. ..+...+++.|.+++||.++
T Consensus 289 ~~~~~~~~~~~~l~~~L~~~-~~~~~~~---p~g~~f~~~~~~-~~--------------~~~~~~~~~~ll~~~gi~v~ 349 (387)
T PRK08960 289 ARRAEFARRRDFLLPALREL-GFGIAVE---PQGAFYLYADIS-AF--------------GGDAFAFCRHFLETEHVAFT 349 (387)
T ss_pred HHHHHHHHHHHHHHHHHHhc-CCcCCcC---CCeeEEEEEecc-cc--------------CCCHHHHHHHHHHhCCEEEc
Confidence 45556666677888888776 5543211 233555555443 10 13456788777666799999
Q ss_pred cCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 459 GGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 459 ~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
+|..|..+. .++++||+++. +.+++...++.|..++
T Consensus 350 pg~~f~~~~--------------------------~~~~iRi~~~~--~~~~l~~al~~l~~~~ 385 (387)
T PRK08960 350 PGLDFGRHQ--------------------------AGQHVRFAYTQ--SLPRLQEAVERIARGL 385 (387)
T ss_pred CchHhCCCC--------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHH
Confidence 987664210 14799999984 5566666666665543
|
|
| >PRK14807 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.6e-23 Score=218.77 Aligned_cols=324 Identities=14% Similarity=0.078 Sum_probs=221.1
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
.+-+|.+... +.|+.+.+++.+.+... ..+ .| .. ....++|+.++++++++++ +|++| +|+++++..+
T Consensus 24 ~~~l~~~~~~~~~p~~~~~a~~~~~~~~--~~~--~y-~~----~~~~~lr~~ia~~~~~~~~-~i~it-~G~~~~l~~~ 92 (351)
T PRK14807 24 KYKMDANETPFELPEEVIKNIQEIVKSS--QVN--IY-PD----PTAEKLREELARYCSVVPT-NIFVG-NGSDEIIHLI 92 (351)
T ss_pred eeEccCCCCCCCCCHHHHHHHHHHhhcC--ccc--CC-CC----ccHHHHHHHHHHHhCCCcc-cEEEe-cCHHHHHHHH
Confidence 3456655544 45678888887755321 111 11 11 1146789999999999887 89888 8999999988
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceE
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPIL 236 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~l 236 (609)
+..+ +++|| .|+++.+.|+.+...++..|++++.+++++++.+|+++++++++. .++++
T Consensus 93 ~~~l---------------~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~----~~~k~ 151 (351)
T PRK14807 93 MLAF---------------INKGD--VVIYPHPSFAMYSVYSKIAGAVEIPVKLKEDYTYDVGSFIKVIEK----YQPKL 151 (351)
T ss_pred HHHh---------------cCCCC--EEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCCCHHHHHHHhhc----cCCCE
Confidence 8776 47898 688888888877777788999999999987788999999999973 47899
Q ss_pred EEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCC-CCCCCccEEEEcCCCCCCCC-CCcEEEEEech
Q 038499 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRS-GQTDGYDAIFLSTHKFLGGP-GSPGILLMTKA 314 (609)
Q Consensus 237 v~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~-~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~ 314 (609)
+++++++||||.+.+.+++.+++++++.++|+|+++...... ...+ .......+++.|++|.+|-| ..+|+++.+++
T Consensus 152 v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~ivDe~y~~~~~~-~~~~~~~~~~~vi~~~S~SK~~~~~GlRiG~~v~~~~ 230 (351)
T PRK14807 152 VFLCNPNNPTGSVIEREDIIKIIEKSRGIVVVDEAYFEFYGN-TIVDVINEFENLIVLRTLSKAFGLAGLRVGYAVANEN 230 (351)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEeCcchhhccc-chHHHhhhCCCEEEEecchHhcccchhceeeeecCHH
Confidence 999999999999999999999999988899999997532111 1100 11113357888999999744 45999999887
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
+ ++.+... .. ....+.+.+. ++..++ .+ ...+...++.++.++++.+.
T Consensus 231 ~--~~~~~~~------------------------~~--~~~~~~~~q~--~~~~~l-~~-~~~~~~~~~~~~~r~~l~~~ 278 (351)
T PRK14807 231 I--LKYLNLV------------------------KS--PYNINSLSQV--IALKVL-RT-GVLKERVNYILNERERLIKE 278 (351)
T ss_pred H--HHHHHHc------------------------cC--CCCcCHHHHH--HHHHHH-hH-HHHHHHHHHHHHHHHHHHHH
Confidence 7 2322110 00 0112222222 222222 22 22444555666777888888
Q ss_pred hCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC
Q 038499 395 LLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL 474 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i 474 (609)
|++++++.+..+ ..++ .+...+ +...+++.|.+ .||.++.+.. ..+
T Consensus 279 l~~~~g~~~~~~----~~~~-~~i~~~-------------------~~~~~~~~l~~-~gV~v~~~~~---~~~------ 324 (351)
T PRK14807 279 LSKIPGIKVYPS----KTNF-ILVKFK-------------------DADYVYQGLLE-RGILVRDFSK---VEG------ 324 (351)
T ss_pred HHhCCCcEECcC----CccE-EEEEcC-------------------CHHHHHHHHHH-CCEEEEECCC---CCC------
Confidence 888888876532 2333 333333 35678888865 5999985321 000
Q ss_pred ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 475 DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.++++||+++ +.++.++++++|++++
T Consensus 325 -------------------~~~~iRis~~---~~~~~~~l~~~l~~~~ 350 (351)
T PRK14807 325 -------------------LEGALRITVS---SCEANDYLINGLKELL 350 (351)
T ss_pred -------------------CCCeEEEEcC---CHHHHHHHHHHHHHhh
Confidence 1479999997 7899999999998753
|
|
| >PRK09105 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=223.89 Aligned_cols=321 Identities=14% Similarity=0.093 Sum_probs=222.1
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
+..+++|.+... ++|+.+.+++.+.+... + .|.. .. ..++|+.|++++|.+++ +|++| +|++.++.
T Consensus 43 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~--~----~Y~~----~~-~~~Lr~aia~~~~v~~e-~I~it-~Gs~~ai~ 109 (370)
T PRK09105 43 EGAVFLNANECPLGPSPAARDAAARSAALS--G----RYDL----EL-EDDLRTLFAAQEGLPAD-HVMAY-AGSSEPLN 109 (370)
T ss_pred CCcEEecCCCCCCCCCHHHHHHHHHHHHHh--c----CCCC----ch-HHHHHHHHHHHhCcChh-hEEEc-CChHHHHH
Confidence 478999988775 45678888887765321 1 1111 11 56788999999999887 89998 89999999
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
.++..+ +++|| .|+++.++|+.+...++..|++++.++.++++.+|++++++. . +++
T Consensus 110 ~~~~~l---------------~~~gd--~Vli~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-~-----~~~ 166 (370)
T PRK09105 110 YAVLAF---------------TSPTA--GLVTADPTYEAGWRAADAQGAPVAKVPLRADGAHDVKAMLAA-D-----PNA 166 (370)
T ss_pred HHHHHH---------------cCCCC--EEEEeCCChHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHhc-C-----CCC
Confidence 998876 37888 699999999999888999999999999988888999999876 3 468
Q ss_pred eEEEEecccCccccccCHHHHHHHHHH--hCCeEEEeccccCCcccccCCCCCCCCcc-EEEEcCCCCCCCCC-CcEEEE
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVEIDVRSGQTDGYD-AIFLSTHKFLGGPG-SPGILL 310 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~--~g~~vivD~A~~~~~~~id~~~~~~~~~D-~v~~S~hK~lggp~-g~G~L~ 310 (609)
+++++++|+||||.+.+.++|.++++. +++++|+|+++.................+ +++.|++|.+|.|+ ++|+++
T Consensus 167 ~~v~l~nP~NPTG~~~~~~~l~~l~~~~~~~~~lIvDEaY~~f~~~~s~~~~~~~~~~vi~~~SfSK~~g~~GlRiG~~v 246 (370)
T PRK09105 167 GLIYICNPNNPTGTVTPRADIEWLLANKPAGSVLLVDEAYIHFSDAPSVVDLVAQRKDLIVLRTFSKLYGMAGMRLGLAA 246 (370)
T ss_pred CEEEEeCCCCCCCcCcCHHHHHHHHHhCCCCcEEEEECchHHhccCcchHHHHhhCCCEEEEecccHhhcCCccceeeee
Confidence 899999999999999999988888764 48999999997421101111111001223 56669999998553 499999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (609)
+++++ ++.+.+. + ...++.... .++.+.+ .+....+...++.++.+++
T Consensus 247 ~~~~~--i~~l~~~--~--------------------------~~~~~~~~~-~aa~~~L-~~~~~~~~~~~~~~~~r~~ 294 (370)
T PRK09105 247 ARPDL--LAKLARF--G--------------------------HNPLPVPAA-AAGLASL-RDPKLVPQRRAENAAVRED 294 (370)
T ss_pred cCHHH--HHHHHhc--C--------------------------CCCcCHHHH-HHHHHHH-hCHHHHHHHHHHHHHHHHH
Confidence 98887 3333211 0 011222221 2222222 1222345666777788888
Q ss_pred HHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhh
Q 038499 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470 (609)
Q Consensus 391 ~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ 470 (609)
+.+.|+++ ++++..+ ..+++.+.+ + .+..++.+.|.++ ||.++.+ |. .
T Consensus 295 l~~~L~~~-g~~~~~~----~~~f~~~~~-~------------------~~~~~l~~~L~~~-gI~v~~~--~~-~---- 342 (370)
T PRK09105 295 TIAWLKKK-GYKCTPS----QANCFMVDV-K------------------RPAKAVADAMAKQ-GVFIGRS--WP-I---- 342 (370)
T ss_pred HHHHHHHC-CCCcCCC----CCcEEEEeC-C------------------CCHHHHHHHHHHC-CcEEecC--CC-C----
Confidence 99999876 6766543 234443222 2 2467888888765 9998422 21 0
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.++++||+++ +++++++++++|+.+.
T Consensus 343 -----------------------~~~~~Ris~~---~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 343 -----------------------WPNWVRVTVG---SEEEMAAFRSAFAKVM 368 (370)
T ss_pred -----------------------CCCeEEEEcC---CHHHHHHHHHHHHHHh
Confidence 1589999997 7899999999999875
|
|
| >PRK00011 glyA serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=226.08 Aligned_cols=349 Identities=17% Similarity=0.155 Sum_probs=223.0
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCcc--CCCCCCchhhHHHHHHHHH-HHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYG--NTHTCDSYVGQHTTNMVHE-ASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~--n~~~~~~~~~~~~~~~~~e-~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
.+.|+.+. .+.++.|.+++...+...|+ ++.+. +..+....+..++ +++.+++++|++.. .|+++ +|+. ++.
T Consensus 27 ~~~l~~~~-n~~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~e~~~~~~la~~~g~~~~-~i~~~-sgt~-al~ 101 (416)
T PRK00011 27 HIELIASE-NFVSPAVMEAQGSVLTNKYAEGYPGKR-YYGGCEYVDVVEQLAIDRAKELFGAEYA-NVQPH-SGSQ-ANA 101 (416)
T ss_pred Ceeeeccc-CcCCHHHHHHHhchhhcccccCCCCcc-ccccchHHHHHHHHHHHHHHHHhCCCce-eeecC-CchH-HHH
Confidence 44554444 44788899998776654443 33332 2334444555555 78899999999865 56665 7866 677
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-----HHcCceEEEEecCC-CCCCCHHHHHHHHhhh
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW-----RQSLAEVVEIGLDD-DGLLDIEALRSKLELY 228 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-----~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~ 228 (609)
.++..+ +++|| .|+++.++|.++...+ ...|++++.++++. ++.+|+++|+++++.
T Consensus 102 ~~l~~l---------------~~~gd--~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~~- 163 (416)
T PRK00011 102 AVYFAL---------------LKPGD--TILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLALE- 163 (416)
T ss_pred HHHHHh---------------cCCCC--EEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHHh-
Confidence 776665 47898 6999999998654322 23467888888874 588999999999974
Q ss_pred ccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEE
Q 038499 229 KDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGI 308 (609)
Q Consensus 229 ~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (609)
++++++++++. .+|...|+++|.++|++||+++++|+||+.+.......+....++|++++|+||+++||.| |+
T Consensus 164 ---~~~k~v~~~~~--~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~g-g~ 237 (416)
T PRK00011 164 ---HKPKLIIAGAS--AYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRG-GL 237 (416)
T ss_pred ---cCCCEEEECCC--cCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCc-eE
Confidence 47888888643 4577789999999999999999999998766542211111112579999999999988885 78
Q ss_pred EEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 038499 309 LLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETY 387 (609)
Q Consensus 309 L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (609)
++.+ +++ .+.+..... ....+++..........+.......+.+.+.++.+++
T Consensus 238 i~~~~~~~--~~~l~~~~~------------------------~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~ 291 (416)
T PRK00011 238 ILTNDEEL--AKKINSAVF------------------------PGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKN 291 (416)
T ss_pred EEeCCHHH--HHHHHHHhC------------------------ccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8886 455 222211100 0001222222221111111111123567788899999
Q ss_pred HHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh
Q 038499 388 IERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY 467 (609)
Q Consensus 388 ~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~ 467 (609)
++++.+.|+++ |++++.. ....+++++.+.+ .. .+...+.+.|.+ .||.++.+...-.+
T Consensus 292 ~~~l~~~L~~~-g~~~~~~--~~~~~~~~i~~~~-~~---------------~~~~~~~~~L~~-~GI~v~~~~~p~~~- 350 (416)
T PRK00011 292 AKALAEALAER-GFRVVSG--GTDNHLVLVDLRS-KG---------------LTGKEAEAALEE-ANITVNKNAVPFDP- 350 (416)
T ss_pred HHHHHHHHHhC-CCeeeec--CCCCeEEEEeCcc-cC---------------CCHHHHHHHHHH-cCcEEccCcCCCCC-
Confidence 99999999886 7877631 1223444554433 11 345678888854 69999854321100
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCC----CCCHHHHHHHHHHHHHHHHh
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPY----YMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~----~~t~eeid~ll~al~~v~~~ 524 (609)
+.. ..+..+|++... .+|++|+++++++|++++.+
T Consensus 351 -~~~---------------------~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~~~ 389 (416)
T PRK00011 351 -RSP---------------------FVTSGIRIGTPAITTRGFKEAEMKEIAELIADVLDN 389 (416)
T ss_pred -CCC---------------------CCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHHhc
Confidence 000 014568996532 46799999999999998764
|
|
| >PLN02483 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=229.55 Aligned_cols=312 Identities=15% Similarity=0.112 Sum_probs=216.2
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
..++......++++.+|+++|.+ +.|+|+ +|..+++. ++.++ +++|| .|++++..|+++
T Consensus 140 ~~~g~~~~~~ele~~lA~~~g~~--~ai~~~-~G~~an~~-~i~al---------------~~~Gd--~Vi~d~~~h~s~ 198 (489)
T PLN02483 140 VDGGTTKLHRELEELVARFVGKP--AAIVFG-MGYATNST-IIPAL---------------IGKGG--LIISDSLNHNSI 198 (489)
T ss_pred cccCCcHHHHHHHHHHHHHhCCC--cEEEEC-CHHHHHHH-HHHHh---------------CCCCC--EEEEcchhhHHH
Confidence 34456778999999999999964 368886 78776553 33333 47899 799999999999
Q ss_pred HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc--CCCc-----e-EEEEecccCccccccCHHHHHHHHHHhCCeE
Q 038499 195 LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD--AKRP-----I-LGSFSACSNVTGIYSDTRSIARLLHQYGGFA 266 (609)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~--~~~~-----~-lv~~s~~sn~TG~~~dl~~I~~la~~~g~~v 266 (609)
...++..|++++.++.+ |+++|++.+++... .+++ + ++++..+.|++|.+.++++|+++|++||+++
T Consensus 199 ~~~~~~~Ga~v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~l~~I~~la~~~~~~l 273 (489)
T PLN02483 199 VNGARGSGATIRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCKLPEIVAVCKKYKAYV 273 (489)
T ss_pred HHHHHHcCCeEEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccCHHHHHHHHHHcCCEE
Confidence 99999999999999865 67777776653110 0222 4 6777788899999999999999999999999
Q ss_pred EEeccccCCcccc------cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccc
Q 038499 267 CFDFAASGPYVEI------DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEK 340 (609)
Q Consensus 267 ivD~A~~~~~~~i------d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (609)
++|++|+.+.... +.......+.|+++.|++|.+|+ .| |++++++++ ++.+.....+.
T Consensus 274 ivDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~g~-~G-G~i~~~~~l--i~~l~~~~~~~------------ 337 (489)
T PLN02483 274 YLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSFGS-CG-GYIAGSKEL--IQYLKRTCPAH------------ 337 (489)
T ss_pred EEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhccc-Cc-eEEEcCHHH--HHHHHHhCccc------------
Confidence 9999998654321 11111123679999999999985 44 999998887 33332211000
Q ss_pred cccccccccccccCCChhHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEE
Q 038499 341 DTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY--IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFN 418 (609)
Q Consensus 341 ~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~--~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~ 418 (609)
.......|...+.+.++++.+..+. .......++.+++++++.+.|+++ |+.++++. ..+++.+.
T Consensus 338 ---------~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~-G~~v~~~~---~sp~~~l~ 404 (489)
T PLN02483 338 ---------LYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKM-GFEVLGDN---DSPVMPIM 404 (489)
T ss_pred ---------cccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHC-CCcccCCC---CCCEEEEE
Confidence 0001123444444555566543221 112344677888899999999887 78777653 34566655
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEE
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWT 498 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~i 498 (609)
+.. . .....+++.|.+ .||.+.+...++.|. ..+.+
T Consensus 405 l~~-~----------------~~~~~~~~~Ll~-~GI~v~~~~fp~~p~--------------------------~~~~v 440 (489)
T PLN02483 405 LYN-P----------------AKIPAFSRECLK-QNVAVVVVGFPATPL--------------------------LLARA 440 (489)
T ss_pred ECC-H----------------HHHHHHHHHHHH-CCcEEeeeCCCCCCC--------------------------CCceE
Confidence 544 1 134567788876 499998643333221 13789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 499 RISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 499 Rls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
|++++..+|++|+++++++|+++++..
T Consensus 441 Ri~isa~~t~edId~~l~~L~~~~~~~ 467 (489)
T PLN02483 441 RICISASHSREDLIKALEVISEVGDLV 467 (489)
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999988643
|
|
| >TIGR03540 DapC_direct LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.5e-23 Score=221.57 Aligned_cols=337 Identities=16% Similarity=0.142 Sum_probs=217.8
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal 153 (609)
+++.++.+... +.++.+.+++.+.+... ..+. |....+..++++.+.+++++.+|. +++++|++| +|++.++
T Consensus 30 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t-~G~~~~l 104 (383)
T TIGR03540 30 DVISLGIGDPDLPTPKHIVEALCKAAENP--ENHR--YPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSL-IGSKEGI 104 (383)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhCC--CCCC--CCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEEC-CCcHHHH
Confidence 34455444333 23566778777655321 1111 111112234444455555544455 333357777 8999999
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhhccC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELYKDA 231 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~~~~ 231 (609)
..++..+ +++|| .|+++.+.|+.+...++..|++++.++++.+ ..+|++++++++.
T Consensus 105 ~~~~~~~---------------~~~gd--~vlv~~P~y~~~~~~~~~~G~~v~~v~~~~~~g~~~d~~~l~~~~~----- 162 (383)
T TIGR03540 105 AHIPLAF---------------VNPGD--IVLVPDPGYPVYRIGTLFAGGEPYEMPLKEENGFLPDFDAIPEDIA----- 162 (383)
T ss_pred HHHHHHh---------------CCCCC--EEEEeCCCCcchHHHHHhcCCEEEEEecCcccCCccCHHHHHhhcc-----
Confidence 9998876 37888 7999999999998889999999999998753 4579999999887
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccC----CcccccCCCCCC-CCccEEEEcCCCCCCCC
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG----PYVEIDVRSGQT-DGYDAIFLSTHKFLGGP 303 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~----~~~~id~~~~~~-~~~D~v~~S~hK~lggp 303 (609)
++++++++++|+||||.+.+ +++|+++|++||+++|+|+++.. +...+.+..+.. ....+++.|++|.+|.|
T Consensus 163 ~~~~~v~i~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~ 242 (383)
T TIGR03540 163 KKAKLMFINYPNNPTGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMT 242 (383)
T ss_pred ccceEEEEeCCCCCcCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEecccccCCc
Confidence 57999999999999999998 57889999999999999999762 222233322211 13357778999999744
Q ss_pred C-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHHHHH
Q 038499 304 G-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHEVIK 381 (609)
Q Consensus 304 ~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~~i~ 381 (609)
+ .+|+++.++++ ++.+... ......+++...+. ++..++ .+ ....+.++
T Consensus 243 GlRiG~~i~~~~l--~~~~~~~------------------------~~~~~~~~~~~~q~--~~~~~l-~~~~~~~~~~~ 293 (383)
T TIGR03540 243 GWRIGMAVGNADL--IAGLGKV------------------------KTNVDSGVFQAIQY--AAIAAL-NGPQDVVKEIR 293 (383)
T ss_pred cceeeEEeCCHHH--HHHHHHH------------------------HHhcccCCChHHHH--HHHHHH-hCCHHHHHHHH
Confidence 3 48999998887 3332111 00111223333332 222222 12 12234556
Q ss_pred HHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCc
Q 038499 382 KQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGC 461 (609)
Q Consensus 382 ~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~ 461 (609)
++.++.++.+.+.|++. ++.+..+. .+.+.+...+ +. ++..++++.|.+++||.+++|.
T Consensus 294 ~~~~~~~~~~~~~L~~~-~~~~~~~~----~~~~~~~~l~-~~---------------~~~~~~~~~ll~~~gi~v~~g~ 352 (383)
T TIGR03540 294 KIYQRRRDLLLEALKKI-GIDVEKPK----ATFYVWVPVP-EG---------------YTSAEFAARLLEETGVVVTPGV 352 (383)
T ss_pred HHHHHHHHHHHHHHHhC-CCEecCCC----cceEEEEECC-CC---------------CCHHHHHHHHHHHCCEEEecch
Confidence 67777888899999887 78776542 3444444433 11 4567888887666799999887
Q ss_pred ccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 462 ACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 462 ~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
.|... .++++||+++ .++++++..++.|.
T Consensus 353 ~f~~~---------------------------~~~~~Ris~~--~~~~~l~~~l~~l~ 381 (383)
T TIGR03540 353 GFGEY---------------------------GEGYIRISLT--VPDERLEEAVARIK 381 (383)
T ss_pred hhCcc---------------------------CCCeEEEEec--CCHHHHHHHHHHHh
Confidence 66411 1479999997 35666666666554
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation. |
| >PRK08361 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-23 Score=222.44 Aligned_cols=325 Identities=16% Similarity=0.135 Sum_probs=218.4
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----C--CCCCCcEEEeCChHHHHHHHHHHHhcc
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----G--GGQEDAMIFCGSGTTAAIKRLQEVMGI 162 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g--~~~~~~vift~sGttaal~~l~~~l~~ 162 (609)
.++.+.+++.+.+...+ . .|....+ ..++|+.+++++ | .+++ +|++| +|+++++..++..+
T Consensus 47 ~~~~~~~~~~~~~~~~~----~-~Y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G~~~al~~~~~~l-- 113 (391)
T PRK08361 47 TPKNIKEAAKRALDEGW----T-HYTPNAG----IPELREAIAEYYKKFYGVDVDVD-NVIVT-AGAYEATYLAFESL-- 113 (391)
T ss_pred CCHHHHHHHHHHHhcCC----C-CCCCCCC----cHHHHHHHHHHHHHHhCCCCCcc-cEEEe-CChHHHHHHHHHHh--
Confidence 35667777766553211 0 0111112 234555555554 4 4555 89998 78888888887766
Q ss_pred cchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhhccCCCceEEEEe
Q 038499 163 AVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELYKDAKRPILGSFS 240 (609)
Q Consensus 163 ~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~~~~~~~~lv~~s 240 (609)
+++|| .|+++.++|......++..|++++.++++.+ +.+|+++|+++++ +++++++++
T Consensus 114 -------------~~~g~--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~i~-----~~~~~v~i~ 173 (391)
T PRK08361 114 -------------LEEGD--EVIIPDPAFVCYVEDAKIAEAKPIRIPLREENEFQPDPDELLELIT-----KRTRMIVIN 173 (391)
T ss_pred -------------cCCCC--EEEEcCCCCcccHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc-----cccEEEEEe
Confidence 37888 6999999999988888889999999998763 4799999999998 578999999
Q ss_pred cccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEe
Q 038499 241 ACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMT 312 (609)
Q Consensus 241 ~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~ 312 (609)
+++||||.+.| +++|+++|+++++++|+|++++... ....+.... ...++++.|++|.+|.|+ .+|+++++
T Consensus 174 ~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~~~~GlRiG~~~~~ 252 (391)
T PRK08361 174 YPNNPTGATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYA-PDNTILANSFSKTFAMTGWRLGFVIAP 252 (391)
T ss_pred CCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcC-CCCEEEEecCchhcCCcHhhhhhhccC
Confidence 99999999999 7889999999999999999975321 111221111 134788899999998553 38999998
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYI---GHEVIKKQEETYIE 389 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~---g~~~i~~~~~~l~~ 389 (609)
+++ ++.+... ......+.+.+.+.+ +.. ++.+.. ..+.++++.++.++
T Consensus 253 ~~~--~~~~~~~------------------------~~~~~~~~~~~~q~~--~~~-~l~~~~~~~~~~~~~~~~~~~~~ 303 (391)
T PRK08361 253 EQV--IKDMIKL------------------------HAYIIGNVASFVQIA--GIE-ALRSKESWKAVEEMRKEYNERRK 303 (391)
T ss_pred HHH--HHHHHHH------------------------HhhhccCCChHHHHH--HHH-HhcCCcccHHHHHHHHHHHHHHH
Confidence 877 3322110 000001222333322 112 222211 24667777788888
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
.+.+.|+.++++.+..+ ..+.+.|...+ .. .++..++++.|.+++||.+++|..|...
T Consensus 304 ~~~~~L~~~~~~~~~~p----~g~~~~~~~l~-~~--------------~~~~~~l~~~l~~~~gv~v~pg~~f~~~--- 361 (391)
T PRK08361 304 LVLKRLKEMPHIKVFEP----KGAFYVFANID-ET--------------GMSSEDFAEWLLEKARVVVIPGTAFGKA--- 361 (391)
T ss_pred HHHHHHHhCCCCeecCC----CEEEEEEEECC-CC--------------CCCHHHHHHHHHHhCCEEEcCchhhCCC---
Confidence 89999988888877655 33444444333 10 1356788888876689999988765311
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++||+++ .++++++..++.|+.+++.
T Consensus 362 ------------------------~~~~iRi~~~--~~~~~l~~al~~l~~~l~~ 390 (391)
T PRK08361 362 ------------------------GEGYIRISYA--TSKEKLIEAMERMEKALEE 390 (391)
T ss_pred ------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 2489999998 3677888888888877653
|
|
| >PRK13392 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.3e-23 Score=224.98 Aligned_cols=344 Identities=17% Similarity=0.134 Sum_probs=221.5
Q ss_pred CceEEecCCCCCC-ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 76 RRLTYADHTASGR-SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 76 ~~~vyld~~a~g~-~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
..+.|..+...+. .++.|.+++.+.+..+-.+.+ . +..-+.......++++.+++++|.+ + .|+|+ +|++++..
T Consensus 47 ~~~~~~sn~yl~l~~~p~v~~a~~~~~~~~~~~~~-~-s~~~~~~~~~~~~Le~~la~~~g~~-~-~i~~~-sG~~a~~~ 121 (410)
T PRK13392 47 RVTIWCSNDYLGMGQHPDVIGAMVDALDRYGAGAG-G-TRNISGTSHPHVLLERELADLHGKE-S-ALLFT-SGYVSNDA 121 (410)
T ss_pred eEEEEECCCccCCCCCHHHHHHHHHHHHHcCCCCc-h-hhhcccChHHHHHHHHHHHHHhCCC-C-EEEEC-cHHHHHHH
Confidence 3466776666655 356788888887765422221 1 1111123334678999999999963 3 66665 89875333
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
++..+. .+.+|+ +|+++..+|.++...++..|++++.++.+ |.+++++.+.+. ..+++
T Consensus 122 -~i~~l~-------------~~~~g~--~vi~~~~~h~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~-~~~~t 179 (410)
T PRK13392 122 -ALSTLG-------------KLLPGC--VILSDALNHASMIEGIRRSGAEKQVFRHN-----DLADLEEQLASV-DPDRP 179 (410)
T ss_pred -HHHHHh-------------cCCCCC--EEEEehhhhHHHHHHHHHcCCeEEEEeCC-----CHHHHHHHHHhc-cCCCC
Confidence 333331 024676 78888889999988888889998877643 566677666532 11478
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc---CC--CCCCCCccEEEEcCCCCCCCCCCcEEE
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID---VR--SGQTDGYDAIFLSTHKFLGGPGSPGIL 309 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id---~~--~~~~~~~D~v~~S~hK~lggp~g~G~L 309 (609)
++|++++++||||.+.|+++|.++|++||+++++|++|+.+..... +. ....+.+|+++.|++|++|+++ |++
T Consensus 180 ~~v~i~~~~n~tG~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~g~~G--G~~ 257 (410)
T PRK13392 180 KLIAFESVYSMDGDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAFGCLG--GYI 257 (410)
T ss_pred EEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhhhccc--chh
Confidence 9999999999999999999999999999999999999985532111 00 0011356888899999999765 788
Q ss_pred EEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV-IQMIRAALAFWVKEYIGHEVIKKQEETYI 388 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i-~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (609)
+.++++ ++.+.....+ ..+..+.+++ ...+.+++... +.. ....++.++.+
T Consensus 258 ~~~~~~--~~~l~~~~~~----------------------~~~s~~~~~~~~~a~~aaL~~~--~~~--~~~~~~~~~~~ 309 (410)
T PRK13392 258 AASADL--IDFVRSFAPG----------------------FIFTTALPPAVAAGATAAIRHL--KTS--QTERDAHQDRV 309 (410)
T ss_pred hcCHHH--HHHHHHhCcc----------------------hhccCcCCHHHHHHHHHHHHHH--hcC--HHHHHHHHHHH
Confidence 888777 2322111000 0011112222 22233444432 222 23446677788
Q ss_pred HHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh
Q 038499 389 ERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG 468 (609)
Q Consensus 389 ~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~ 468 (609)
+++.+.|+++ |+++..+ ..+++.+.+.. + ....++++.|.++.||.++++.....|.
T Consensus 310 ~~l~~~L~~~-g~~~~~~----~~~~~~i~~~~-~----------------~~~~~~~~~L~~~~GI~v~~~~~p~~~~- 366 (410)
T PRK13392 310 AALKAKLNAN-GIPVMPS----PSHIVPVMVGD-P----------------TLCKAISDRLMSEHGIYIQPINYPTVPR- 366 (410)
T ss_pred HHHHHHHHHc-CCCCCCC----CCCEEEEEeCC-H----------------HHHHHHHHHHHHhCCEEEeeeCCCCCCC-
Confidence 8999999876 6766533 33454333322 1 1345788888666799999643211110
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..+++|++++.++|++|+++++++|+++.++
T Consensus 367 -------------------------~~~~lRis~~~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 367 -------------------------GTERLRITPTPLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred -------------------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999999999999999999999998765
|
|
| >PRK02731 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-23 Score=223.06 Aligned_cols=312 Identities=16% Similarity=0.084 Sum_probs=215.8
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHH
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILR 169 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (609)
++.+.+++.+.+......+. . . ..++|+.+++++|++++ +|++| +|+++++..++..+
T Consensus 47 ~~~~~~a~~~~~~~~~~y~~------~-~----~~~lr~~ia~~~~~~~~-~i~~t-~G~~~~l~~~~~~l--------- 104 (367)
T PRK02731 47 SPKAIEAIRAAADELHRYPD------G-S----GFELKAALAEKFGVDPE-RIILG-NGSDEILELLARAY--------- 104 (367)
T ss_pred CHHHHHHHHHHHHhhcCCCC------C-c----HHHHHHHHHHHhCcCHH-HEEEc-CCHHHHHHHHHHHh---------
Confidence 45577877776543211111 1 0 25789999999999876 89888 89999998887766
Q ss_pred HHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccc
Q 038499 170 EKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY 249 (609)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~ 249 (609)
+++|| .|+++.+.|..+...++..|++++.++.+ ++.+|+++++++++ ++++++++++++||||.+
T Consensus 105 ------~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~~~~~-~~~~~~~~l~~~~~-----~~~~~v~l~~p~nptG~~ 170 (367)
T PRK02731 105 ------LGPGD--EVIYSEHGFAVYPIAAQAVGAKPVEVPAK-DYGHDLDAMLAAVT-----PRTRLVFIANPNNPTGTY 170 (367)
T ss_pred ------cCCCC--EEEEecCCHHHHHHHHHHcCCeEEEeccc-CCCCCHHHHHHHhC-----CCCcEEEEeCCCCCCCcC
Confidence 36888 68998888877776677889999999884 46789999999997 578999999999999999
Q ss_pred cCHHHHHHHHHHh--CCeEEEeccccCCcc----cccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCC
Q 038499 250 SDTRSIARLLHQY--GGFACFDFAASGPYV----EIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFP 322 (609)
Q Consensus 250 ~dl~~I~~la~~~--g~~vivD~A~~~~~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~ 322 (609)
.|.++|.++++.+ |+++++|+++..... ...+.........+++.|++|.+|.|+ ++|++++++++ ++.+.
T Consensus 171 ~~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~l~~~~~~--~~~l~ 248 (367)
T PRK02731 171 LPAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGLRVGYGIAPPEI--IDALN 248 (367)
T ss_pred CCHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCcccceeeeeCCHHH--HHHHH
Confidence 9999999999875 899999999653211 111110101123466779999987443 58999999887 33332
Q ss_pred CCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE
Q 038499 323 PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK 402 (609)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~ 402 (609)
... ..+ +.+.+.+ .++.+++ ++....+.++++.+++++++.+.|++. ++.
T Consensus 249 ~~~------------------------~~~--~~~~~~~--~~a~~~l-~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~ 298 (367)
T PRK02731 249 RVR------------------------QPF--NVNSLAL--AAAVAAL-DDDAFVEKSRALNAEGMAWLTEFLAEL-GLE 298 (367)
T ss_pred Hcc------------------------CCC--CCCHHHH--HHHHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHC-CCc
Confidence 110 000 1112222 2222222 222235677777888888899999877 666
Q ss_pred EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHH
Q 038499 403 ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQI 482 (609)
Q Consensus 403 v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~ 482 (609)
+..+ ..+++++.+.. . .+..++++.|.+ .||.++++..+.
T Consensus 299 ~~~~----~g~~~~i~~~~-~----------------~~~~~~~~~L~~-~gI~v~~~~~~~------------------ 338 (367)
T PRK02731 299 YIPS----VGNFILVDFDD-G----------------KDAAEAYQALLK-RGVIVRPVAGYG------------------ 338 (367)
T ss_pred cCCC----CceEEEEECCC-C----------------CCHHHHHHHHHH-CCEEEEeCCCCC------------------
Confidence 6522 34555555532 1 357788898865 699999764321
Q ss_pred HHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 483 RSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 483 ~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++++||+++ +.+|+++++++|+++++
T Consensus 339 -----------~~~~iRis~~---~~~e~~~l~~aL~~~~~ 365 (367)
T PRK02731 339 -----------LPNALRITIG---TEEENRRFLAALKEFLA 365 (367)
T ss_pred -----------CCCeEEEecC---CHHHHHHHHHHHHHHHh
Confidence 1479999997 88999999999998764
|
|
| >PRK09276 LL-diaminopimelate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-23 Score=219.82 Aligned_cols=337 Identities=17% Similarity=0.143 Sum_probs=214.9
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~ 154 (609)
.+.++.+... +.++.+.+++.+.+... .... |....+..++++.+.+++.+.+|. +++++|++| +|+++++.
T Consensus 33 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t-~G~~~~i~ 107 (385)
T PRK09276 33 VISLGIGDPDLPTPDHIIEAMCKAVEDP--ENHQ--YPSYEGMLEFRKAVADWYKRRFGVELDPETEVISL-IGSKEGIA 107 (385)
T ss_pred EEEecCCCCCCCCCHHHHHHHHHHHhCC--CCCC--CCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEc-cCcHHHHH
Confidence 4444444332 34567788887766421 1111 111111233344444444444354 344357776 89999999
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhhccCC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~~~~~ 232 (609)
.++..+ +++|| .|+++.+.|+.+...++..|++++.++++.+ ..+|++++++++. +
T Consensus 108 ~~~~~~---------------~~~gd--~Vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~-----~ 165 (385)
T PRK09276 108 HIPLAF---------------VNPGD--VVLVPDPGYPVYKIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVA-----K 165 (385)
T ss_pred HHHHHh---------------CCCCC--EEEEcCCCCcChHHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhcc-----c
Confidence 988876 47888 6999999999988888899999999998643 4579999998887 5
Q ss_pred CceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCC----cccccCCCCCC-CCccEEEEcCCCCCCCCC
Q 038499 233 RPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGP----YVEIDVRSGQT-DGYDAIFLSTHKFLGGPG 304 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~----~~~id~~~~~~-~~~D~v~~S~hK~lggp~ 304 (609)
+++++++++|+||||.+.+. ++|+++|++||+++|+|+++... .....+..... .+..+++.|++|.+|.|+
T Consensus 166 ~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G 245 (385)
T PRK09276 166 KAKLMFINYPNNPTGAVADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTG 245 (385)
T ss_pred cceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhcCCcc
Confidence 79999999999999999985 67888999999999999997632 11122222211 134577889999998553
Q ss_pred -CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHH
Q 038499 305 -SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQ 383 (609)
Q Consensus 305 -g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~ 383 (609)
.+|++++++++ ++.+... ......+.+...+. ++..++.......+.++++
T Consensus 246 lRiG~~i~~~~l--~~~~~~~------------------------~~~~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~~ 297 (385)
T PRK09276 246 WRIGFAVGNADL--IAGLGKV------------------------KSNVDSGVFQAIQE--AGIAALNGPQEVVEELRKI 297 (385)
T ss_pred hhheeeeCCHHH--HHHHHHH------------------------HhhccCCCCHHHHH--HHHHHHcCcHHHHHHHHHH
Confidence 49999998887 3332111 00001122222221 1112221111234566677
Q ss_pred HHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCccc
Q 038499 384 EETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
.++.++++.+.|+++ ++++..+ ..+++.+...+ +. ++..++++.|.++.||.+++|..|
T Consensus 298 ~~~~~~~l~~~L~~~-~~~~~~~----~~~~~~~v~~~-~~---------------~~~~~l~~~ll~~~gi~v~~g~~f 356 (385)
T PRK09276 298 YQERRDILVEGLRKL-GLEVEPP----KATFYVWAPVP-KG---------------YTSAEFATLLLDKAGVVVTPGNGF 356 (385)
T ss_pred HHHHHHHHHHHHHhC-CCcccCC----CcceEEEEECC-CC---------------CCHHHHHHHHHHhCCEEECCchhh
Confidence 777888899999887 7776654 23444444433 11 456788888766679999988766
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
..+ .++++||+++ .+++++...++.|.
T Consensus 357 ~~~---------------------------~~~~~Ris~~--~~~~~l~~~l~~l~ 383 (385)
T PRK09276 357 GEY---------------------------GEGYFRIALT--VPDERIEEAVERIK 383 (385)
T ss_pred CCC---------------------------CCCeEEEEeC--CCHHHHHHHHHHHh
Confidence 421 1479999997 36676666666654
|
|
| >PRK07324 transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.7e-23 Score=221.44 Aligned_cols=298 Identities=14% Similarity=0.026 Sum_probs=205.3
Q ss_pred HHHHHHHHHHHhC-CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 123 VHEASNYIKKCLG-GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 123 ~~e~r~~ia~~~g-~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
..++|+.|+++++ .+++ +|++| +|+++++..++..+ +++|| .|+++.+.|+++...++..
T Consensus 64 ~~~lr~~ia~~~~~~~~~-~vi~t-~G~~~al~~~~~~l---------------~~~gd--~Vl~~~P~y~~~~~~~~~~ 124 (373)
T PRK07324 64 SPEFKEAVASLYQNVKPE-NILQT-NGATGANFLVLYAL---------------VEPGD--HVISVYPTYQQLYDIPESL 124 (373)
T ss_pred CHHHHHHHHHHhcCCChh-hEEEc-CChHHHHHHHHHHh---------------CCCCC--EEEEcCCCchhHHHHHHHc
Confidence 4578899999885 5565 89988 78888898888776 47888 6888888998888888899
Q ss_pred CceEEEEecCCC--CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc
Q 038499 202 LAEVVEIGLDDD--GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 202 G~~vv~v~~~~~--g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
|++++.++++.+ +.+|+++|+++++ ++++++++++++||||.+.+ +++|+++|++||+++++|+++..-.
T Consensus 125 g~~v~~v~~~~~~~~~~d~~~l~~~~~-----~~~kli~i~~p~NPtG~~~~~~~l~~i~~~a~~~~~~ii~De~y~~l~ 199 (373)
T PRK07324 125 GAEVDYWQLKEENGWLPDLDELRRLVR-----PNTKLICINNANNPTGALMDRAYLEEIVEIARSVDAYVLSDEVYRPLD 199 (373)
T ss_pred CCEEEEEecccccCCCCCHHHHHHhCC-----CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccc
Confidence 999999998753 4689999998887 68999999999999999998 8889999999999999999965321
Q ss_pred ccccCCCC-CCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSG-QTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
........ ......+++.|++|.+|.|+ .+|++++++++ ++.+.... .....
T Consensus 200 ~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~RiG~i~~~~~l--i~~~~~~~------------------------~~~~~ 253 (373)
T PRK07324 200 EDGSTPSIADLYEKGISTNSMSKTYSLPGIRVGWIAANEEV--IDILRKYR------------------------DYTMI 253 (373)
T ss_pred cCCCCCChhhccCCEEEEecchhhcCCccceeEEEecCHHH--HHHHHHHh------------------------CcEEe
Confidence 11111111 01123467789999998543 48999998777 33332110 00001
Q ss_pred CChhHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCC
Q 038499 355 GTPQVIQMIRAALAFWVKE-YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTK 433 (609)
Q Consensus 355 gtp~i~~~~~aal~~~~~~-~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~ 433 (609)
+.+.+.+.+. . .. +.. ..-.+..++..++.++.+.+.|.+.+++....+ ..+.+.|...+ ..
T Consensus 254 ~~~~~~q~~a-~-~~-l~~~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~p----~gg~~~~i~~~-~~--------- 316 (373)
T PRK07324 254 CAGVFDDMLA-S-LA-LEHRDAILERNRKIVRTNLAILDEWVAKEPRVSYVKP----KAVSTSFVKLD-VD--------- 316 (373)
T ss_pred cCChHHHHHH-H-HH-HcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEECC----CceEEEEEEeC-CC---------
Confidence 2222333221 1 11 111 112344455556667778888887777776655 23444444443 11
Q ss_pred CCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHH
Q 038499 434 TETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513 (609)
Q Consensus 434 ~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ 513 (609)
.+..++++.|.++.||.+++|..|. .++++|||++ .+++.++.
T Consensus 317 ------~~~~~~~~~ll~~~gv~v~pg~~F~-----------------------------~~~~iRis~~--~~~~~l~~ 359 (373)
T PRK07324 317 ------MPSEDFCLKLLKETGVLLVPGNRFD-----------------------------LEGHVRIGYC--CDTETLKK 359 (373)
T ss_pred ------CCHHHHHHHHHHhcCEEEECccccC-----------------------------CCCeEEEEec--CCHHHHHH
Confidence 3567788887666899999887553 1479999997 36788888
Q ss_pred HHHHHHHHHHh
Q 038499 514 TLEALEFIAIY 524 (609)
Q Consensus 514 ll~al~~v~~~ 524 (609)
.++.|+.+++.
T Consensus 360 ~l~rl~~~l~~ 370 (373)
T PRK07324 360 GLKKLSEFLRE 370 (373)
T ss_pred HHHHHHHHHHh
Confidence 88888887653
|
|
| >PRK07908 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-23 Score=217.58 Aligned_cols=321 Identities=15% Similarity=0.095 Sum_probs=216.5
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
++.+.|+.+.+. +.|+.+.+++.+.+......+.. ....++|+.+++++|.+++ +|++| +|+++++.
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~----------~g~~~lr~aia~~~~~~~~-~I~it-~Ga~~al~ 89 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARLGDLAAYPST----------EDERRARAAVAARHGRTPD-EVLLL-AGAAEGFA 89 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhHhhcCCCc----------cchHHHHHHHHHHhCcChh-hEEEC-CCHHHHHH
Confidence 357777776654 35677888888766432222211 1256789999999999886 89998 89999998
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
.+++ + ++++ +++..+.+......++..|++++.++++.++.+|++++ . +++
T Consensus 90 ~~~~-l----------------~~~~---viv~~P~y~~~~~~~~~~G~~i~~v~~~~~~~~d~~~l----~-----~~~ 140 (349)
T PRK07908 90 LLAR-L----------------RPRR---AAVVHPSFTEPEAALRAAGIPVHRVVLDPPFRLDPAAV----P-----DDA 140 (349)
T ss_pred HHHh-c----------------CCCe---EEEeCCCChHHHHHHHHcCCEEEeeccCcccCcChhHh----c-----cCC
Confidence 8776 4 3544 45556677776777788999999999987677888754 3 468
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccC--CcccccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEE
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG--PYVEIDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLM 311 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~--~~~~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~ 311 (609)
+++++++++||||.+.+.++|.++|++ +.++|+|++++. .....++..... ...+++.|+||.+|-| ..+|++++
T Consensus 141 ~~i~l~np~NPTG~~~~~~~l~~l~~~-~~~iIvDe~y~~~~~~~~~~l~~~~~-~~~i~i~S~SK~~~l~GlRiG~~~~ 218 (349)
T PRK07908 141 DLVVIGNPTNPTSVLHPAEQLLALRRP-GRILVVDEAFADAVPGEPESLAGDDL-PGVLVLRSLTKTWSLAGLRVGYALG 218 (349)
T ss_pred CEEEEcCCCCCCCCCcCHHHHHHHHhc-CCEEEEECcchhhccCCccccccccC-CCEEEEeecccccCCccceeeeeec
Confidence 899999999999999999999999974 788999999752 112223322211 2235566999998733 34899999
Q ss_pred echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY--IGHEVIKKQEETYIE 389 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~--~g~~~i~~~~~~l~~ 389 (609)
++++ ++.+.+... ....+++.. +++..++... ...+.++++.++.++
T Consensus 219 ~~~~--~~~~~~~~~------------------------~~~~~~~~~-----~a~~~~~~~~~~~~~~~~~~~~~~~r~ 267 (349)
T PRK07908 219 APDV--LARLTRGRA------------------------HWPVGTLQL-----EAIAACCAPRAVAEAAADAARLAADRA 267 (349)
T ss_pred CHHH--HHHHHhcCC------------------------CCCccHHHH-----HHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 8887 333322110 011122111 1122222110 124566777888889
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
++.+.|+++ ++++..+. . +.+.+...+ +..++.+.|. +.||.+++|..|.+.
T Consensus 268 ~l~~~L~~~-~~~~~~p~---~-g~~~~~~~~-------------------~~~~~~~~l~-~~gI~v~~g~~f~~~--- 319 (349)
T PRK07908 268 EMVAGLRAV-GARVVDPA---A-APFVLVRVP-------------------DAELLRKRLR-ERGIAVRRGDTFPGL--- 319 (349)
T ss_pred HHHHHHHhC-CcEeccCC---C-ceEEEEECC-------------------cHHHHHHHHH-hCCEEEEECCCCCCC---
Confidence 999999887 78877652 2 344444333 2457777774 469999988655310
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++|||++ +++|+++++++|+.+...+
T Consensus 320 ------------------------~~~~vRis~~---~~~~~~~l~~al~~~~~~~ 348 (349)
T PRK07908 320 ------------------------DPDYLRLAVR---PRAEVPVLVQALAEILKAG 348 (349)
T ss_pred ------------------------CCCeEEEEeC---CCccHHHHHHHHHHHHhcc
Confidence 2589999996 8899999999999987654
|
|
| >PLN02414 glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.9e-23 Score=236.89 Aligned_cols=347 Identities=13% Similarity=0.084 Sum_probs=244.3
Q ss_pred CceEEecCCCCCC----ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 76 RRLTYADHTASGR----SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 76 ~~~vyld~~a~g~----~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
++.+|.++.+.|. .|..|.+.+.+... +|..-+...-..+.+..+...+.++.|++++|.+.+ ++.++ .++|+
T Consensus 100 kN~~~~~fiG~G~y~~~~P~~v~~~i~~~~~-~~TaytPYqaEisQG~lqal~~~Qt~ia~LtG~~~a-naSL~-d~aTA 176 (993)
T PLN02414 100 KNKVFKSYIGMGYYNTHVPPVILRNILENPG-WYTQYTPYQAEIAQGRLESLLNYQTMITDLTGLPMS-NASLL-DEGTA 176 (993)
T ss_pred cCCccccccCCCCCCccCCHHHHHHHHhChH-HHhhcCCCchHHHHHHHHHHHHHHHHHHHHhCCChh-hEeec-CChHH
Confidence 3567999999998 77888788776543 222212111123455678889999999999999987 88898 67777
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH----cCceEEEEecCCCCCCCHHHHHHHHhh
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLEL 227 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~~g~ld~e~L~~al~~ 227 (609)
+.+.++.++. +.+|++..|++++.+|+++...|+. .|++|+.++.+.. + ...
T Consensus 177 aaea~~~a~~--------------~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v~~~~~---~------~~~- 232 (993)
T PLN02414 177 AAEAMAMCNN--------------ILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVADEKDF---D------YSS- 232 (993)
T ss_pred HHHHHHHHHh--------------cccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEecchhh---c------ccc-
Confidence 8887766554 4555444799999999999988854 5999999986431 1 111
Q ss_pred hccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccc-cCCCCCCCCccEEEEcCCCCC-----C
Q 038499 228 YKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEI-DVRSGQTDGYDAIFLSTHKFL-----G 301 (609)
Q Consensus 228 ~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~i-d~~~~~~~~~D~v~~S~hK~l-----g 301 (609)
+. ...++.+..|.+|.+.|+++|+++||++|+++++ +++..+...+ +..++ |+|+++.+.|||+ |
T Consensus 233 ----~~-v~~vlvq~P~~~G~v~dv~~I~~~ah~~GaL~iV-aad~lal~~l~~pge~---GADi~vgsgqKwg~P~G~G 303 (993)
T PLN02414 233 ----GD-VCGVLVQYPATDGEVLDYAEFVKNAHANGVKVVM-ATDLLALTMLKPPGEW---GADIVVGSAQRFGVPMGYG 303 (993)
T ss_pred ----Cc-eEEEEEecCCCCeEEcCHHHHHHHHHHcCCEEEE-EECHHHhcCCCCHhhc---cCcEEEECCCccccCCCCC
Confidence 12 2344566777899999999999999999999999 7776666555 34444 8999999999998 6
Q ss_pred CCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH--HHHHHHHH---HHHhcC
Q 038499 302 GPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFW---VKEYIG 376 (609)
Q Consensus 302 gp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~---~~~~~g 376 (609)
||. .|++++++++ .+.+++...|++. +..................|++.+|.|+... +.++++.. .....|
T Consensus 304 GP~-aGflavr~~~--~r~~PgriVG~s~-d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~G 379 (993)
T PLN02414 304 GPH-AAFLATSQEY--KRLMPGRIIGVSV-DSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEG 379 (993)
T ss_pred CCC-eeEEEECHHH--HhhCCCcccCccc-CCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhcccc
Confidence 666 8999999998 4555545666532 1100000001112333456778899988442 23333322 224479
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcE
Q 038499 377 HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQ 456 (609)
Q Consensus 377 ~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~ 456 (609)
.+.+.++++.++.++.++|... |+++..+ +...+++|.+.. ..++.+.|.+ .||.
T Consensus 380 l~~Ia~ri~~la~~l~~~L~~~-G~~~~~~---~~f~~vt~~~~~--------------------~~~v~~~L~~-~gI~ 434 (993)
T PLN02414 380 LKTIAQRVHGLAGVFAAGLKKL-GFQVQSL---PFFDTVKVKCSD--------------------ADAIADAAAK-VGIN 434 (993)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc-CCccCCC---CCcCeEEEecCC--------------------HHHHHHHHHH-CCCe
Confidence 9999999999999999999874 7888654 344566666532 4678888866 5997
Q ss_pred eccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 457 ARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 457 v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
++.- ..+.+|+|+++++|++||+.++++|..
T Consensus 435 l~~~---------------------------------~~~~lrvs~~e~~T~edId~L~~~l~~ 465 (993)
T PLN02414 435 LRVV---------------------------------DANTVTVSFDETTTLEDVDKLFKVFAG 465 (993)
T ss_pred eEEe---------------------------------cCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence 7621 136799999999999999999999974
|
|
| >PRK05387 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=219.37 Aligned_cols=323 Identities=16% Similarity=0.074 Sum_probs=219.1
Q ss_pred ceEEecCCCCCC-ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASGR-SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g~-~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
+.++|+.+.... .++.+.+++.+.+... .. .| ... ...++|+.++++++.+++ +|++| +|++++|..
T Consensus 25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~---~~--~y-~~~----~~~~lr~aia~~~~~~~~-~I~it-~G~~~al~~ 92 (353)
T PRK05387 25 KLIKLNTNENPYPPSPKVLEAIRAALGDD---LR--LY-PDP----NADALRQAIAAYYGLDPE-QVFVG-NGSDEVLAH 92 (353)
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHhhhh---hh--cC-CCC----cHHHHHHHHHHHhCCCHH-HEEEc-CCHHHHHHH
Confidence 578888776654 3567888887655421 11 01 110 135799999999999886 89998 899999999
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++..+ +++|| .|+++.+.|+.+...++..|++++.++.++++.+|+++|++ .++
T Consensus 93 ~~~~l---------------~~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~---------~~~ 146 (353)
T PRK05387 93 AFLAF---------------FNHDR--PLLFPDITYSFYPVYAGLYGIPYEEIPLDDDFSIDVEDYLR---------PNG 146 (353)
T ss_pred HHHHh---------------cCCCC--EEEEeCCCHHHHHHHHHHcCCEEEEeecCCCCCCCHHHHHh---------cCC
Confidence 98876 47898 69999999877766677889999999998888899998862 246
Q ss_pred EEEEecccCccccccCHHHHHHHHHHh-CCeEEEeccccCCc--ccccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEE
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQY-GGFACFDFAASGPY--VEIDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLM 311 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~-g~~vivD~A~~~~~--~~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~ 311 (609)
++++++|+||||.+.|.+++.++++.+ ++++|+|+++..-. ....+. ......+++.|++|.+|.| ..+|+++.
T Consensus 147 ~v~~~~P~NPtG~~~~~~~~~~l~~~~~~~~livDe~y~~~~~~~~~~~~--~~~~~~i~~~S~SK~~~~~GlR~G~~~~ 224 (353)
T PRK05387 147 GIIFPNPNAPTGIALPLAEIERILAANPDSVVVIDEAYVDFGGESAIPLI--DRYPNLLVVQTFSKSRSLAGLRVGFAIG 224 (353)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCcEEEEeCcccccCCcchHHHH--hhCCCEEEEEehhHhhcchhhhceeeec
Confidence 789999999999999999999999886 99999999974211 111111 1113368888999998744 35899999
Q ss_pred echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
++++ ++.+.... ......+.+..... ++... +.+....+..+++.++.++++
T Consensus 225 ~~~~--~~~l~~~~------------------------~~~~~~~~~~~~q~-~~~~~-l~~~~~~~~~~~~~~~~~~~l 276 (353)
T PRK05387 225 HPEL--IEALNRVK------------------------NSFNSYPLDRLAQA-GAIAA-IEDEAYFEETRAKVIATRERL 276 (353)
T ss_pred CHHH--HHHHHHhh------------------------ccCCCCCcCHHHHH-HHHHH-hcCHHHHHHHHHHHHHHHHHH
Confidence 8877 33321110 00001122222111 11111 222223456677778888889
Q ss_pred HHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh
Q 038499 392 LERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL 471 (609)
Q Consensus 392 ~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l 471 (609)
.+.|+++ ++++..+ ..+++ |...+ + .+..++++.|.+ .||.++. |..+ .
T Consensus 277 ~~~L~~~-g~~~~~~----~~~~~-~~~~~-~----------------~~~~~~~~~l~~-~gi~v~~---~~~~-~--- 325 (353)
T PRK05387 277 VEELEAL-GFEVLPS----KANFV-FARHP-S----------------HDAAELAAKLRE-RGIIVRH---FNKP-R--- 325 (353)
T ss_pred HHHHHHC-CCeECCC----cCcEE-EEECC-C----------------CCHHHHHHHHHH-CCEEEEE---CCCC-C---
Confidence 9999887 7766432 22333 33333 1 356788888865 5999972 2211 0
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++++||+++ +.+++++++++|+++.+
T Consensus 326 ----------------------~~~~iRis~~---~~~~~~~~~~~L~~~~~ 352 (353)
T PRK05387 326 ----------------------IDQFLRITIG---TDEEMEALVDALKEILA 352 (353)
T ss_pred ----------------------CCCeEEEEeC---CHHHHHHHHHHHHHHhh
Confidence 1489999997 78999999999998754
|
|
| >PRK05764 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=217.97 Aligned_cols=333 Identities=16% Similarity=0.074 Sum_probs=217.9
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
.++.+.+++.+.+... .. .|....+...+++.+.+++.+..| .+++ +|++| +|+++++..++..+
T Consensus 45 ~~~~~~~~~~~~~~~~----~~-~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~~-~g~~~a~~~~~~~~------ 111 (393)
T PRK05764 45 TPEHIKEAAIEALDDG----KT-KYTPAAGIPELREAIAAKLKRDNGLDYDPS-QVIVT-TGAKQALYNAFMAL------ 111 (393)
T ss_pred CCHHHHHHHHHHHhcC----CC-CcCCCCChHHHHHHHHHHHHHHhCCCCCHH-HEEEe-CCcHHHHHHHHHHh------
Confidence 3567777777666421 11 111111223333333334333334 4454 89998 78888888887765
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
+++|| .|+++.+.|..+...++..|++++.++.++ ++.+|+++++++++ ++++++++++++|
T Consensus 112 ---------~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~-----~~~~~v~~~~p~N 175 (393)
T PRK05764 112 ---------LDPGD--EVIIPAPYWVSYPEMVKLAGGVPVFVPTGEENGFKLTVEQLEAAIT-----PKTKALILNSPSN 175 (393)
T ss_pred ---------cCCCC--EEEecCCCCcchHHHHHHcCCEEEEEecCcccCCcCCHHHHHHhhC-----ccceEEEEECCCC
Confidence 37888 699999999998888888999999999874 35789999999997 5789999999999
Q ss_pred ccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCC--CCCCccEEEEcCCCCCCCCC-CcEEEEEech
Q 038499 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSG--QTDGYDAIFLSTHKFLGGPG-SPGILLMTKA 314 (609)
Q Consensus 245 ~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~--~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~ 314 (609)
|||.+.+ +++|+++|++||+++++|++++.... ...+... ...+.++++.|++|++|.|+ .+|+++.+++
T Consensus 176 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~RiG~i~~~~~ 255 (393)
T PRK05764 176 PTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGWRLGYAAGPKE 255 (393)
T ss_pred CCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccceeEEEecCHH
Confidence 9999976 67899999999999999999764211 0111111 11245788899999998553 4899998887
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
+ ++.+.... .....+++.+.+. ++..++.......+.++++.++.++.+.+.
T Consensus 256 ~--~~~~~~~~------------------------~~~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 307 (393)
T PRK05764 256 L--IKAMSKLQ------------------------SHSTSNPTSIAQY--AAVAALNGPQDEVEEMRQAFEERRDLMVDG 307 (393)
T ss_pred H--HHHHHHHH------------------------hhcccCCChHHHH--HHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 7 33321110 0001122233332 112222101122345666677778888999
Q ss_pred hCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC
Q 038499 395 LLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL 474 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i 474 (609)
|++++++.+..+ ..+++.+...+... .....+..++.+.|.+.+||.+++|..|..
T Consensus 308 L~~~~g~~~~~~----~g~~~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~--------- 363 (393)
T PRK05764 308 LNEIPGLECPKP----EGAFYVFPNVSKLL-----------GKSITDSLEFAEALLEEAGVAVVPGIAFGA--------- 363 (393)
T ss_pred HhhCCCCcccCC----CcceEEEEeccccc-----------ccccCCHHHHHHHHHHhCCEEEccccccCC---------
Confidence 988888887654 23444444333011 001123577887776668999998876541
Q ss_pred ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 475 DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
++++||+++ .++++++..+++|.+++++
T Consensus 364 --------------------~~~vRis~~--~~~~~~~~~i~~l~~~~~~ 391 (393)
T PRK05764 364 --------------------PGYVRLSYA--TSLEDLEEGLERIERFLES 391 (393)
T ss_pred --------------------CCEEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 389999997 4799999999999988764
|
|
| >PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-23 Score=218.98 Aligned_cols=329 Identities=16% Similarity=0.129 Sum_probs=221.0
Q ss_pred ChHHHHHHHHHhhcCC-ccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 89 SLRYIENYIINNVLPF-YGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~-~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
.++.+.+++.+.+... ++.+. +....+...+++++++++++++|.+ ++|+++ +|++ ++..++.++
T Consensus 57 ~~~~i~~a~~~~~~~~~~~~~~---~~~~~G~~~l~~~l~~~la~~~g~~--~~i~~t-sG~~-a~~~~~~~l------- 122 (397)
T PRK06939 57 NHPELIAAAKAALDSHGFGMAS---VRFICGTQDLHKELEEKLAKFLGTE--DAILYS-SCFD-ANGGLFETL------- 122 (397)
T ss_pred CCHHHHHHHHHHHHHcCCCCcc---cccccCCcHHHHHHHHHHHHHhCCC--cEEEEc-ChHH-HHHHHHHHh-------
Confidence 5677888887777542 11111 1111234567889999999999975 367777 7865 455555544
Q ss_pred HHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc-CCCceEEEEecccCcc
Q 038499 168 LREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD-AKRPILGSFSACSNVT 246 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~-~~~~~lv~~s~~sn~T 246 (609)
+++|| +|++++++|+++...++..|++++.++. .|++++++++++... ..++++++.+++.|+|
T Consensus 123 --------~~~gd--~vi~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~ 187 (397)
T PRK06939 123 --------LGKED--AIISDALNHASIIDGVRLCKAKRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMD 187 (397)
T ss_pred --------CCCCC--EEEEEhhhhHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCC
Confidence 47898 7999999999999889889999888764 488999988864211 1268888998899999
Q ss_pred ccccCHHHHHHHHHHhCCeEEEeccccCCccccc----CCCCC-CCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC
Q 038499 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVEID----VRSGQ-TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF 321 (609)
Q Consensus 247 G~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id----~~~~~-~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~ 321 (609)
|.+.++++|.++|++||+++|+|++++.+....+ ..... ..++|+++.|+||+++|+. .|++++++++ ++.+
T Consensus 188 G~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r-~G~v~~~~~~--~~~l 264 (397)
T PRK06939 188 GDIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGAS-GGYTAGRKEV--IDWL 264 (397)
T ss_pred CCcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccC-ceEEEeCHHH--HHHH
Confidence 9999999999999999999999999865432211 00000 1256899999999997675 5999999887 3333
Q ss_pred CCCccCCCceEeecccccccccccccccccccCCC--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Q 038499 322 PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT--PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ 399 (609)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt--p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p 399 (609)
..... .. ...++ +.....+.+++.+. +. .+.++++.+++++++.+.|.++
T Consensus 265 ~~~~~----------------------~~-~~~~~~~~~~~~a~~~al~~~--~~--~~~~~~~~~~~~~~l~~~L~~~- 316 (397)
T PRK06939 265 RQRSR----------------------PY-LFSNSLAPAIVAASIKVLELL--EE--SDELRDRLWENARYFREGMTAA- 316 (397)
T ss_pred HHhCc----------------------cc-cccCCCCHHHHHHHHHHHHHH--hc--CHHHHHHHHHHHHHHHHHHHHc-
Confidence 21100 00 00122 22222233334432 21 2466778888899999999876
Q ss_pred ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHH
Q 038499 400 NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQS 479 (609)
Q Consensus 400 ~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~ 479 (609)
++++..+ ..+++.+.+.. . .+..++++.|.++ ||.+.++.++..+.
T Consensus 317 ~~~~~~~----~~~~~~~~~~~-~----------------~~~~~~~~~L~~~-gI~v~~~~~~~~~~------------ 362 (397)
T PRK06939 317 GFTLGPG----EHPIIPVMLGD-A----------------KLAQEFADRLLEE-GVYVIGFSFPVVPK------------ 362 (397)
T ss_pred CCCcCCC----CCCEEEEEECC-H----------------HHHHHHHHHHHHC-CceEeeeCCCCCCC------------
Confidence 5555432 23444443322 1 2356788888776 99998543211110
Q ss_pred HHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 480 YQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 480 ~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
..+++|++++++++++|+++++++|+.+++..
T Consensus 363 --------------~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~~~ 394 (397)
T PRK06939 363 --------------GQARIRTQMSAAHTKEQLDRAIDAFEKVGKEL 394 (397)
T ss_pred --------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHHh
Confidence 13689999999999999999999999987653
|
|
| >PRK01533 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-23 Score=219.87 Aligned_cols=320 Identities=14% Similarity=0.080 Sum_probs=218.0
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
..+.|+.+.+. ++++.+.+++.+.+......|.. ...++|+.+++++|++++ +|++| +|+++++..
T Consensus 30 ~~i~l~~nen~~~~~~~v~~a~~~~~~~~~~Yp~~-----------g~~~Lr~aia~~~~~~~~-~I~vt-~Gs~e~i~~ 96 (366)
T PRK01533 30 SFVKLASNENPFGCSPRVLDELQKSWLDHALYPDG-----------GATTLRQTIANKLHVKME-QVLCG-SGLDEVIQI 96 (366)
T ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHHHhcCcCCCC-----------CHHHHHHHHHHHhCCCcc-eEEEC-CCHHHHHHH
Confidence 56778776655 35667888887654322111111 145689999999999887 89998 899999999
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++.++ +++|| .|++..+.|+.+...++..|++++.|+++ ++.+|+++|+++++ ++++
T Consensus 97 ~~~~l---------------~~~gd--~vlv~~P~y~~~~~~~~~~g~~v~~v~~~-~~~~d~~~l~~~~~-----~~~~ 153 (366)
T PRK01533 97 ISRAV---------------LKAGD--NIVTAGATFPQYRHHAIIEGCEVKEVALN-NGVYDLDEISSVVD-----NDTK 153 (366)
T ss_pred HHHHh---------------cCCCC--EEEEcCCcHHHHHHHHHHcCCEEEEeecC-CCCcCHHHHHHHhC-----cCCc
Confidence 98876 37888 69999999999998999999999999986 45699999999987 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHH---HhCCeEEEeccccCCccc---ccC-CCCCCCCccEEEEcCCCCCCCC-CCcE
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLH---QYGGFACFDFAASGPYVE---IDV-RSGQTDGYDAIFLSTHKFLGGP-GSPG 307 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~---~~g~~vivD~A~~~~~~~---id~-~~~~~~~~D~v~~S~hK~lggp-~g~G 307 (609)
++++++|+||||.+.+.+++.++++ +++ ++++|+++...... ... .........+++.|++|.+|.| ..+|
T Consensus 154 ~v~i~~P~NPTG~~~~~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG 232 (366)
T PRK01533 154 IVWICNPNNPTGTYVNDRKLTQFIEGISENT-LIVIDEAYYEYVTAKDFPETLPLLEKHKNILVLRTFSKAYGLASFRVG 232 (366)
T ss_pred EEEEeCCCCCCCCCcCHHHHHHHHHhCCCCC-EEEEEccHHHhhccccCcchhHHhccCCCEEEEeCchHHhcChHHHHh
Confidence 9999999999999999777666654 444 67889986421100 000 0011112357888999999855 3599
Q ss_pred EEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 038499 308 ILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETY 387 (609)
Q Consensus 308 ~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (609)
++++++++ ++.+... +...+.+.+.+. ++.+ .+.+....+.+.+..++.
T Consensus 233 ~~i~~~~~--~~~l~~~--------------------------~~~~~~~~~~q~--aa~~-~l~~~~~~~~~~~~~~~~ 281 (366)
T PRK01533 233 YAVGHEEL--IEKLNVV--------------------------RLPFNVSSLAQK--AATI-AFGDDEFIEEIVRVNTEG 281 (366)
T ss_pred HHhCCHHH--HHHHHHh--------------------------cCCCCcCHHHHH--HHHH-HhCCHHHHHHHHHHHHHH
Confidence 99998877 3332111 000112222222 1112 222222344555666667
Q ss_pred HHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh
Q 038499 388 IERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY 467 (609)
Q Consensus 388 ~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~ 467 (609)
++++.+.++.+ ++++..+ ..+++++.+ + +...+.+.|.+ .||.+++ |
T Consensus 282 r~~~~~~l~~~-g~~~~~~----~~nf~~~~~-~-------------------~~~~~~~~l~~-~GI~Vr~---~---- 328 (366)
T PRK01533 282 LRQYESFCKEN-EIPFYQS----QTNFIFLPV-E-------------------NGGEIYEACAH-AGFIIRP---F---- 328 (366)
T ss_pred HHHHHHHHHhC-CCccCCC----cCcEEEEeC-C-------------------CHHHHHHHHHH-CCcEEcc---C----
Confidence 77777777766 6766544 233444333 3 24678888865 6999994 1
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
++++||+++ +.+|+++++++|+.+.+...+
T Consensus 329 ---------------------------~~~iRis~~---~~~~~~~l~~al~~~~~~~~~ 358 (366)
T PRK01533 329 ---------------------------PNGVRITVG---TREQNEGVISVLQQHFENKKR 358 (366)
T ss_pred ---------------------------CCceEEeCC---CHHHHHHHHHHHHHHHHhccc
Confidence 268999998 999999999999998766554
|
|
| >PRK05942 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.6e-23 Score=219.71 Aligned_cols=300 Identities=14% Similarity=0.109 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH
Q 038499 121 NMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW 198 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (609)
.+++.+.+++.+.+|. +++++|++| +|+++++..++..+ +++|| .|+++.++|+.+...+
T Consensus 77 ~lr~aia~~~~~~~~~~~~~~~~i~vt-~G~~~al~~~~~~~---------------~~~gd--~Vlv~~P~y~~~~~~~ 138 (394)
T PRK05942 77 SFRQAITDWYHRRYGVELDPDSEALPL-LGSKEGLTHLALAY---------------VNPGD--VVLVPSPAYPAHFRGP 138 (394)
T ss_pred HHHHHHHHHHHHHHCCCcCCCCeEEEc-cChHHHHHHHHHHh---------------CCCCC--EEEEcCCCCcchHHHH
Confidence 3444444444444453 444247777 89999999988776 47899 6999999999988888
Q ss_pred HHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEecccc
Q 038499 199 RQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 199 ~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~ 273 (609)
...|++++.++++. ++.+|+++|++++. ++++++++++|+||||.+.+ +++|+++|++||+++|+|++++
T Consensus 139 ~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-----~~~k~i~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~ 213 (394)
T PRK05942 139 LIAGAQIYPIILKPENDWLIDLSSIPEEVA-----QQAKILYFNYPSNPTTATAPREFFEEIVAFARKYEIMLVHDLCYA 213 (394)
T ss_pred HHcCCEEEEeecCCccCCccCHHHHHHhcc-----ccceEEEEcCCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEeccch
Confidence 88999999999875 34699999999987 58999999999999999998 6778899999999999999965
Q ss_pred CCc----ccccCCCCC-CCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 274 GPY----VEIDVRSGQ-TDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 274 ~~~----~~id~~~~~-~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
... ....+.... ..+..+++.|++|.+|.| .++|++++++++ ++.+....
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~GlRiG~i~~~~~l--~~~l~~~~---------------------- 269 (394)
T PRK05942 214 ELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGWRVGFVVGNRHI--IQGLRTLK---------------------- 269 (394)
T ss_pred hhccCCCCCCChhhCCCccccEEEEecchhccCChhhheeeeecCHHH--HHHHHHHH----------------------
Confidence 221 111221111 113457778999999744 358999999887 33332110
Q ss_pred ccccccCCChhHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCC
Q 038499 348 IEERESGGTPQVIQMI-RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINS 426 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~ 426 (609)
.....+.+.+.+.+ .+++.. .....+.++++.++.++++.+.|... ++.+..+ ..+++.|...+ ..
T Consensus 270 --~~~~~~~~~~~q~~~~~~l~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~----~~~~f~~~~~~-~~-- 336 (394)
T PRK05942 270 --TNLDYGIFSALQKAAETALQL---PDSYLQQVQERYRTRRDFLIQGLGEL-GWNIPPT----KATMYLWVPCP-VG-- 336 (394)
T ss_pred --hhcccCCCHHHHHHHHHHHhC---cHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCC----CeeeEEEEECC-CC--
Confidence 00011233333322 222211 11235567777788888888989876 6766544 34555544443 11
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCC
Q 038499 427 SLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYM 506 (609)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~ 506 (609)
++..+++..+.++.||.+++|..|... .++++||+++
T Consensus 337 -------------~~~~~~~~~~l~~~gV~v~~g~~f~~~---------------------------~~~~iRis~~--- 373 (394)
T PRK05942 337 -------------MGSTDFALNVLQKTGVVVTPGNAFGEG---------------------------GEGYVRISLI--- 373 (394)
T ss_pred -------------CCHHHHHHHHHHHCCEEEeCChhhCcC---------------------------CCCeEEEEec---
Confidence 345666665556679999987654310 2489999996
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 038499 507 SNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 507 t~eeid~ll~al~~v~~~~ 525 (609)
.+.+.+.++|+.+.+.+
T Consensus 374 --~~~~~l~~~l~~l~~~~ 390 (394)
T PRK05942 374 --ADCDRLGEALDRLKQAG 390 (394)
T ss_pred --CCHHHHHHHHHHHHHhh
Confidence 23466677776665543
|
|
| >PLN03026 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-23 Score=217.64 Aligned_cols=324 Identities=14% Similarity=0.065 Sum_probs=218.8
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
.+++|+.+.+. ++++.+.+++.+.. +.+. | ... ...++|+.+++++|.+++ +|++| +|+++++..
T Consensus 53 ~~i~l~~n~~p~~~~~~v~~a~~~~~-----~~~~--Y-p~~----~~~~lr~~ia~~~~~~~~-~I~~t-~Ga~~~i~~ 118 (380)
T PLN03026 53 DIVKLDANENPYGPPPEVLEALGNMK-----FPYV--Y-PDP----ESRRLRAALAEDSGLESE-NILVG-CGADELIDL 118 (380)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHhhH-----hhcc--C-CCC----CHHHHHHHHHHHhCcChh-hEEEc-CCHHHHHHH
Confidence 67888877544 34455777765421 1110 1 110 145799999999999876 89887 899999998
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++..+ +++|| .|+++.+.|+.+...++..|++++.++.++++.+|+++|++++.. ++++
T Consensus 119 ~~~~~---------------~~~gd--~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~----~~~~ 177 (380)
T PLN03026 119 LMRCV---------------LDPGD--KIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVET----HKPK 177 (380)
T ss_pred HHHHh---------------cCCCC--EEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhc----cCCc
Confidence 88776 37888 689888888877777788999999999877788999999999842 5899
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc-CCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEec
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID-VRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTK 313 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id-~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~ 313 (609)
++++++|+||||.+.|.+++.++++.. +++|+|+++..-...-. +.........+++.|++|.+|-| .++|+++.++
T Consensus 178 ~v~l~~P~NPTG~~~~~~~l~~l~~~~-~~vi~DeaY~~~~~~~~~~~~~~~~~~viv~~SfSK~~glaGlRiGy~~~~~ 256 (380)
T PLN03026 178 LLFLTSPNNPDGSIISDDDLLKILELP-ILVVLDEAYIEFSTQESRMKWVKKYDNLIVLRTFSKRAGLAGLRVGYGAFPL 256 (380)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHhcC-CEEEEECcchhhcCCcchHHHHHhCCCEEEEecchHhhcCccccceeeecCH
Confidence 999999999999999999999999865 89999999752110000 00010113357888999999833 3589999988
Q ss_pred hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 038499 314 ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALE 393 (609)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~ 393 (609)
++ ++.+.... . ..+.+.+.+. ++.+. +.+....+.++++.++.++++.+
T Consensus 257 ~~--i~~l~~~~------------------------~--~~~~~~~~q~--aa~~a-L~~~~~~~~~~~~~~~~r~~l~~ 305 (380)
T PLN03026 257 SI--IEYLWRAK------------------------Q--PYNVSVAAEV--AACAA-LSNPKYLEDVKNALVEERERLFG 305 (380)
T ss_pred HH--HHHHHHhc------------------------C--CCCCCHHHHH--HHHHH-hhCHHHHHHHHHHHHHHHHHHHH
Confidence 87 33321110 0 0111122221 11222 12222345666777778888999
Q ss_pred HhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcC
Q 038499 394 RLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 394 ~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~ 473 (609)
.|+.++++.+..+ ...++++.+.+ . .+..++.+.|.+ .||.++.+.. + +
T Consensus 306 ~L~~~~~~~~~p~----~~~f~~~~~~~-~----------------~~~~~~~~~l~~-~gI~v~~~~~---~------~ 354 (380)
T PLN03026 306 LLKEVPFLEPYPS----DANFILCRVTS-G----------------RDAKKLKEDLAK-MGVMVRHYNS---K------E 354 (380)
T ss_pred HHHHCCCCeECCC----CCeEEEEECCC-C----------------CCHHHHHHHHHH-CCeEEEECCC---C------C
Confidence 9988766655322 23344443332 1 356788888875 6999996432 1 0
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.++++|||++ +.+++++++++|+.+
T Consensus 355 --------------------~~~~lRis~~---~~~~~~~l~~al~~~ 379 (380)
T PLN03026 355 --------------------LKGYIRVSVG---KPEHTDALMEALKQL 379 (380)
T ss_pred --------------------CCCEEEEecC---CHHHHHHHHHHHHHh
Confidence 1479999998 789999999999764
|
|
| >TIGR00858 bioF 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-23 Score=217.01 Aligned_cols=323 Identities=18% Similarity=0.136 Sum_probs=217.6
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
.++.+.+++.+.+.. |+..... +....+......++++.+++++|.+ + .|+++ +|+++++. ++..+
T Consensus 31 ~~~~v~~a~~~~~~~-~~~~~~~-~~~~~g~~~~~~~l~~~la~~~~~~-~-~i~~~-~G~~~~~~-~l~~~-------- 96 (360)
T TIGR00858 31 SHPEVIQAAQQGAEQ-YGAGSTA-SRLVSGNSPLHEELEEELAEWKGTE-A-ALLFS-SGYLANVG-VISAL-------- 96 (360)
T ss_pred CCHHHHHHHHHHHHh-cCCCCCC-cCcccCCcHHHHHHHHHHHHHhCCC-C-EEEEC-chHHHHHH-HHHHh--------
Confidence 557899999887754 2322211 1111223456788999999999853 3 66666 78877664 33443
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcccc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGI 248 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~ 248 (609)
+++|| +|++.+++|+++...++..|++++.++. +|+++|++++++.. .++++++++++++|+||.
T Consensus 97 -------~~~gd--~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~~~~~~-~~~~~~v~~~~~~~~~G~ 161 (360)
T TIGR00858 97 -------VGKGD--LILSDALNHASLIDGCRLSGARVRRYRH-----NDVEHLERLLEKNR-GERRKLIVTDGVFSMDGD 161 (360)
T ss_pred -------CCCCC--EEEEEccccHHHHHHHHhcCCceEEecC-----CCHHHHHHHHHHcc-cCCCeEEEEeCCccCCCC
Confidence 36888 7999999999999889999999988874 58999999987421 025789999999999999
Q ss_pred ccCHHHHHHHHHHhCCeEEEeccccCCccccc------CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCC
Q 038499 249 YSDTRSIARLLHQYGGFACFDFAASGPYVEID------VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP 322 (609)
Q Consensus 249 ~~dl~~I~~la~~~g~~vivD~A~~~~~~~id------~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~ 322 (609)
+.|+++|.++|+++|+++|+|++++.+....+ .......+.|+++.|+||++|+ .| |++++++++ ++.+.
T Consensus 162 ~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~~~-~g-G~~~~~~~~--~~~~~ 237 (360)
T TIGR00858 162 IAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKALGS-YG-AYVAGSQAL--IDYLI 237 (360)
T ss_pred CcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhhhc-cC-cEEEcCHHH--HHHHH
Confidence 99999999999999999999999876543222 1111113668999999999985 44 899888877 22221
Q ss_pred CCccCCCceEeecccccccccccccccccccCCChhHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce
Q 038499 323 PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI-QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI 401 (609)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~-~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i 401 (609)
.... ......++++.. ....+++.+. + ..+.+.++.+++++++.+.|+++ ++
T Consensus 238 ~~~~----------------------~~~~~~~~~~~~~~a~~~al~~~--~--~~~~~~~~~~~~~~~l~~~L~~~-~~ 290 (360)
T TIGR00858 238 NRAR----------------------TLIFSTALPPAVAAAALAALELI--Q--EEPWRREKLLALIARLRAGLEAL-GF 290 (360)
T ss_pred HhCc----------------------cceecCCCCHHHHHHHHHHHHHH--h--hCHHHHHHHHHHHHHHHHHHHHc-CC
Confidence 1100 000111222221 1223334332 2 12567788899999999999886 56
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHH
Q 038499 402 KILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQ 481 (609)
Q Consensus 402 ~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~ 481 (609)
++..+ ..+++++.... . .+...+.+.|.+ .||.++++..+..+.
T Consensus 291 ~~~~~----~~~~~~~~~~~-~----------------~~~~~~~~~l~~-~gI~v~~~~~~~~~~-------------- 334 (360)
T TIGR00858 291 TLMPS----CTPIVPVIIGD-N----------------ASALALAEELQQ-QGIFVGAIRPPTVPA-------------- 334 (360)
T ss_pred ccCCC----CCCEEEEEeCC-H----------------HHHHHHHHHHHH-CCeeEeeeCCCCCCC--------------
Confidence 65532 34566655533 1 235678888865 599998653322110
Q ss_pred HHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 482 IRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 482 ~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
.++++||+++.+++++|+++++++|+
T Consensus 335 ------------~~~~iRis~~~~~~~~~i~~~l~~l~ 360 (360)
T TIGR00858 335 ------------GTSRLRLTLSAAHTPGDIDRLAEALK 360 (360)
T ss_pred ------------CCceEEEEEcCCCCHHHHHHHHHhhC
Confidence 13689999999999999999999874
|
This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model. |
| >PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-22 Score=214.83 Aligned_cols=346 Identities=21% Similarity=0.211 Sum_probs=219.0
Q ss_pred CcchHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHH
Q 038499 47 SISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEA 126 (609)
Q Consensus 47 ~~~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~ 126 (609)
..++.++.++.+++.+.-.-.....| -|+.+-.+++.+..+...+...... .|... ...+...+.+..++
T Consensus 15 ~~~~~~~vl~~~~~~l~~~~~~~~~P------~~~~~~~~~~~~~~i~~~~l~~~~n--~n~~~--~~~~P~~~~~E~~v 84 (373)
T PF00282_consen 15 EGESLEEVLKDLREILAPGVTHWHHP------RFFGFVPGGPSPASILADLLASALN--QNGFT--WEASPAATEIEREV 84 (373)
T ss_dssp SHH-HHHHHHHHHHHTHGCS-TTTST------TBESSSHT--CHHHHHHHHHHHHHT---BTTS--TTTSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhccCCCCCCh------hHhhhccCCccHHHHHHHHHHhhhc--ccccc--cccccccccchHHH
Confidence 34447888888887764211111112 2677777777777765555444432 23332 34566788999999
Q ss_pred HHHHHHHhCCCCC------CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 127 SNYIKKCLGGGQE------DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 127 r~~ia~~~g~~~~------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
.+++++++|.+.+ ...+||++||.+++..+..+.....+... .......++++|+++...|+|...+++.
T Consensus 85 i~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~----~~~~~~~~~~~i~~s~~aH~S~~Kaa~~ 160 (373)
T PF00282_consen 85 IRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSK----AKGVEEIPKPVIYVSEQAHYSIEKAARI 160 (373)
T ss_dssp HHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHH----HHTTTHCSSEEEEEETTS-THHHHHHHH
T ss_pred HHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhh----hcccccccccccccccccccHHHHhcce
Confidence 9999999999821 25788877787777776554321111100 0011113567999999999999999999
Q ss_pred cCceEEEEecCCCCCCCHHHHHHHHhhhccCCC-ceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc-
Q 038499 201 SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKR-PILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE- 278 (609)
Q Consensus 201 ~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~-~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~- 278 (609)
.|..++.||+++++.+|+++|+++|.+....++ |.+|+.+.+++.||.+.|+++|+++|+++++|+|||+|.++...-
T Consensus 161 lGlg~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~wlHVDaA~gg~~~~~ 240 (373)
T PF00282_consen 161 LGLGVRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIWLHVDAAYGGSALLS 240 (373)
T ss_dssp TTSEEEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-EEEEEETTGGGGGGH
T ss_pred eeeEEEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhccccceeeeeccccccccccc
Confidence 999999999999999999999999986544443 448889999999999999999999999999999999998763321
Q ss_pred ccCCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC--CCCccCCCceEeecccccccccccccccccccC
Q 038499 279 IDVRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF--PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 279 id~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~--~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
..++.. ....+|.++.++|||++.|.++|+++++++....... .+.+.+... ...+.. .+...... .
T Consensus 241 ~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~-------~~~~~~-~~~~~~tl-~ 311 (373)
T PF00282_consen 241 PEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDD-------RESDES-YDYGDYTL-Q 311 (373)
T ss_dssp CTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S--------SSS-GG-GCEEEGSS-S
T ss_pred ccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccc-------cccccc-cccccccc-c
Confidence 112211 2246899999999999999999999999865211111 111111000 000000 00001111 1
Q ss_pred CChhH-HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEec
Q 038499 355 GTPQV-IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIH 420 (609)
Q Consensus 355 gtp~i-~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~ 420 (609)
++... ...+.+.+.. ....|+.++.++..++++++.++|++.++++++.+ +.+++++|..+
T Consensus 312 ~SR~~~alk~w~~l~~--~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~~---~~~~~vcFr~k 373 (373)
T PF00282_consen 312 GSRRFRALKLWATLKS--LGREGYRERIRRCIELARYLADRLRKDPRFELVNE---PDLNIVCFRYK 373 (373)
T ss_dssp SSGHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESST---TSSSEEEEEES
T ss_pred ccccchHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEcC---CCceEEEEEeC
Confidence 22211 1111222222 24457778888889999999999999999999975 58899999863
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A .... |
| >PLN00175 aminotransferase family protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-22 Score=217.50 Aligned_cols=333 Identities=14% Similarity=0.040 Sum_probs=222.9
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
.++.+.+++.+.+... .. .|....+..++++.+.+++.+..|. +++++|++| +|+++++..++..+
T Consensus 68 ~~~~~~~~~~~~~~~~----~~-~Y~~~~G~~~Lr~aia~~~~~~~g~~~~~~~~I~vt-~G~~~al~~~~~~l------ 135 (413)
T PLN00175 68 GPDFVKEAAIQAIRDG----KN-QYARGFGVPELNSAIAERFKKDTGLVVDPEKEVTVT-SGCTEAIAATILGL------ 135 (413)
T ss_pred CCHHHHHHHHHHHhcC----CC-CcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEe-CCHHHHHHHHHHHh------
Confidence 4667788877766531 11 1222233445555555556555564 444368888 88888998887765
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCc
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~ 245 (609)
+++|| .|++..+.|+.+...++..|++++.+++++ ++.+|+++|++++. ++++++++++++||
T Consensus 136 ---------~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~-----~~~k~i~i~~p~NP 199 (413)
T PLN00175 136 ---------INPGD--EVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFT-----SKTRAILINTPHNP 199 (413)
T ss_pred ---------CCCCC--EEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcC-----cCceEEEecCCCCC
Confidence 47898 699999999998888999999999999874 57899999999997 57999999999999
Q ss_pred cccccC---HHHHHHHHHHhCCeEEEeccccCCcc---cccCCCCC-CCCccEEEEcCCCCCCCCC-CcEEEEEechhhc
Q 038499 246 TGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---EIDVRSGQ-TDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQ 317 (609)
Q Consensus 246 TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~id~~~~~-~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~ 317 (609)
||.+.+ +++|+++|++||+++|+|+++..... ...+.... ..+..+++.|++|.++.|+ .+|++++++++
T Consensus 200 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~RiG~~v~~~~l-- 277 (413)
T PLN00175 200 TGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEGDHISMASLPGMYERTVTMNSLGKTFSLTGWKIGWAIAPPHL-- 277 (413)
T ss_pred CCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCCcccChhhCCCCcCcEEEEecchhhccCcchheeeeEeCHHH--
Confidence 999986 56789999999999999999754321 11222221 1234578889999998553 59999999887
Q ss_pred cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHhC
Q 038499 318 LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
+..+... ......+++.+.+.+. ..++ .+ ....+.++++.++.++.+.+.|.
T Consensus 278 ~~~l~~~------------------------~~~~~~~~s~~~Q~a~--~~~l-~~~~~~~~~~~~~~~~~~~~l~~~L~ 330 (413)
T PLN00175 278 TWGVRQA------------------------HSFLTFATATPMQWAA--VAAL-RAPESYYEELKRDYSAKKDILVEGLK 330 (413)
T ss_pred HHHHHHH------------------------HhhccCCCCHHHHHHH--HHHH-hCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322110 0001123333333222 2222 11 12345667777888888999998
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
+. ++.+..+ ..+++.|.... +. + ..+..++++.|.++.||.+.+|..|......
T Consensus 331 ~~-g~~~~~p----~g~~f~~~~~~-~~------------~-~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~------- 384 (413)
T PLN00175 331 EV-GFKVYPS----SGTYFVMVDHT-PF------------G-FENDIAFCEYLIEEVGVAAIPPSVFYLNPED------- 384 (413)
T ss_pred HC-CCeecCC----CeeEEEEEecc-cc------------C-CCCHHHHHHHHHHhCCEEEeCchHhCCCCCC-------
Confidence 86 6776654 33555454332 10 0 0135678888776679999988765311000
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++++||+++ .++++++..++.|+++++
T Consensus 385 -----------------~~~~iRls~~--~~~e~l~~~~~rL~~~~~ 412 (413)
T PLN00175 385 -----------------GKNLVRFAFC--KDEETLRAAVERMKTKLK 412 (413)
T ss_pred -----------------CCCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence 1479999998 378999999999987764
|
|
| >PRK08363 alanine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=217.39 Aligned_cols=343 Identities=12% Similarity=-0.025 Sum_probs=217.9
Q ss_pred ceEEecCCCCC----CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----C--CCCCCcEEEeC
Q 038499 77 RLTYADHTASG----RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----G--GGQEDAMIFCG 146 (609)
Q Consensus 77 ~~vyld~~a~g----~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g--~~~~~~vift~ 146 (609)
+++.|..+..+ +.++.+.+++.+.+... .. .|....+ ..++|+.+++++ | .+++ +|++|
T Consensus 31 ~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~----~~-~Y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~-~i~it- 99 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEG----HN-YYGPSEG----LPELREAIVKREKRKNGVDITPD-DVRVT- 99 (398)
T ss_pred CeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcC----CC-CCCCCCC----cHHHHHHHHHHHHHhcCCCCChh-hEEEe-
Confidence 45555544432 35677888887766421 11 1111112 345566666655 4 4555 89998
Q ss_pred ChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEE-ecCC-CCCCCHHHHHHH
Q 038499 147 SGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEI-GLDD-DGLLDIEALRSK 224 (609)
Q Consensus 147 sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v-~~~~-~g~ld~e~L~~a 224 (609)
+|+++++..++..+ +++|| .|+++.++|+.+...++..|++++.+ +.++ ++.+|+++|+++
T Consensus 100 ~G~~~al~~~~~~~---------------~~~gd--~Vl~~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~ 162 (398)
T PRK08363 100 AAVTEALQLIFGAL---------------LDPGD--EILIPGPSYPPYTGLVKFYGGVPVEYRTIEEEGWQPDIDDIRKK 162 (398)
T ss_pred CCHHHHHHHHHHHh---------------CCCCC--EEEEcCCCCcchHHHHHHcCCEEEEeccccccCCcCCHHHHHhh
Confidence 78888999888776 37898 69999999999988888899998888 5554 346899999999
Q ss_pred HhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCccc---ccCCCCCCCCccEEEEcCCC
Q 038499 225 LELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE---IDVRSGQTDGYDAIFLSTHK 298 (609)
Q Consensus 225 l~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~---id~~~~~~~~~D~v~~S~hK 298 (609)
++ ++++++++++++||||.+.+ +++|+++|+++|+++|+|++++..... ..+..+.....-+++.|++|
T Consensus 163 ~~-----~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~vi~~~SfSK 237 (398)
T PRK08363 163 IT-----EKTKAIAVINPNNPTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYEGKHVSPGSLTKDVPVIVMNGLSK 237 (398)
T ss_pred CC-----cceEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccCCcccCHHHcCcCCcEEEEecchh
Confidence 87 57899999999999999988 778999999999999999997532111 11111111112456779999
Q ss_pred CCCCC-CCcEEEEE--echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhc
Q 038499 299 FLGGP-GSPGILLM--TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYI 375 (609)
Q Consensus 299 ~lggp-~g~G~L~~--~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~ 375 (609)
+++.| .++|++++ ++++ ++.+..... . ......+.+.+.+.+. ..++.....
T Consensus 238 ~~~~~GlRiG~~~~~~~~~~--~~~l~~~~~--------------------~-~~~~~~~~s~~~q~~~--~~~l~~~~~ 292 (398)
T PRK08363 238 VYFATGWRLGYIYFVDPEGK--LAEVREAID--------------------K-LARIRLCPNTPAQFAA--IAGLTGPMD 292 (398)
T ss_pred ccCCccceEEEEEEeCcHHH--HHHHHHHHH--------------------H-HhcccccCChHHHHHH--HHHHhCChH
Confidence 97655 36999998 5444 111110000 0 0000012222222211 111111112
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCc
Q 038499 376 GHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGI 455 (609)
Q Consensus 376 g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI 455 (609)
..+.++++.++.++++.+.|.+++++.+..+ ..+++.|...+ +. ...+..+++..+.++.||
T Consensus 293 ~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~g~~~~~~~l~-~~-------------~~~~~~~~~~~~l~~~gV 354 (398)
T PRK08363 293 YLEEYMKKLKERRDYIYKRLNEIPGISTTKP----QGAFYIFPRIE-EG-------------PWKDDKEFVLDVLHEAHV 354 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCEecCC----CeEEEEEEEec-cC-------------CCCCHHHHHHHHHHhCCE
Confidence 3455667777888889999988888876544 34666664443 10 001234454444456799
Q ss_pred EeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 456 QARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 456 ~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+++|..|..+ .++|+||+++ .++++++..++.|+.++..
T Consensus 355 ~v~~g~~f~~~---------------------------~~~~iRis~~--~~~~~l~~~l~~l~~~~~~ 394 (398)
T PRK08363 355 LFVHGSGFGEY---------------------------GAGHFRLVFL--PPVEILEEAMDRFEEFMRE 394 (398)
T ss_pred EEeCchhhCCC---------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 99988765311 2489999996 4789999999999887654
|
|
| >PRK07682 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-22 Score=216.62 Aligned_cols=329 Identities=12% Similarity=0.049 Sum_probs=218.5
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
+..+.+++.+.+...+ . .|....+..++++.+.+++.+.+|. +++++|++| +|+++++..++..+
T Consensus 35 ~~~~~~~~~~~~~~~~----~-~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t-~G~~~al~~~~~~l------- 101 (378)
T PRK07682 35 PWNVREASIRSLEQGY----T-SYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVT-VGASQALDVAMRAI------- 101 (378)
T ss_pred CHHHHHHHHHHHhcCC----C-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CChHHHHHHHHHHh-------
Confidence 4456677766553211 0 0111122334444444444444454 343379998 78888999888776
Q ss_pred HHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccCc
Q 038499 168 LREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~ 245 (609)
+++|| .|++..+.|+.+...++..|++++.++.+. ++.+|+++|++++. ++++++++++++||
T Consensus 102 --------~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~~~~p~NP 166 (378)
T PRK07682 102 --------INPGD--EVLIVEPSFVSYAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAIT-----AKTKAILLCSPNNP 166 (378)
T ss_pred --------CCCCC--EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcC-----cccEEEEEECCCCC
Confidence 47888 699999999988888888999999998763 56899999999987 57899999999999
Q ss_pred cccccC---HHHHHHHHHHhCCeEEEeccccCCccc---ccCCCCC-CCCccEEEEcCCCCCCCCC-CcEEEEEechhhc
Q 038499 246 TGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE---IDVRSGQ-TDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQ 317 (609)
Q Consensus 246 TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~---id~~~~~-~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~ 317 (609)
||.+.+ +++|+++|++|++++|+|++++..... ..+.... .....+++.|++|.+|.|+ .+|++++++++
T Consensus 167 tG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~~~~~~~~-- 244 (378)
T PRK07682 167 TGAVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGWRLGFIAAPVYF-- 244 (378)
T ss_pred cCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCCCCCChhhcccccCCEEEEecCcccccChhhhhhhhhcCHHH--
Confidence 999986 678999999999999999997643211 1111111 1134688889999998443 49999999887
Q ss_pred cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHHhC
Q 038499 318 LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
++.+.... .....+++.+.+. ++..++ .+ ....+.++++.++.++++.+.|+
T Consensus 245 i~~l~~~~------------------------~~~~~~~~~~~q~--a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~ 297 (378)
T PRK07682 245 SEAMLKIH------------------------QYSMMCAPTMAQF--AALEAL-RAGNDDVIRMRDSYRKRRNFFVTSFN 297 (378)
T ss_pred HHHHHHHH------------------------HhhccCCCHHHHH--HHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 33331110 0001123333332 222222 22 12245667777888889999998
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
++ ++++..+ ..+.+.|.... +. ..+..++++.|.++.||.+++|..|..+
T Consensus 298 ~~-~~~~~~p----~g~~~~~~~~~-~~--------------~~~~~~~~~~ll~~~gv~v~pg~~f~~~---------- 347 (378)
T PRK07682 298 EI-GLTCHVP----GGAFYAFPSIS-ST--------------GLSSEEFAEQLLLEEKVAVVPGSVFGES---------- 347 (378)
T ss_pred HC-CCccCCC----CeeEEEEEecc-CC--------------CCCHHHHHHHHHHhCCEEEcCchhhCcC----------
Confidence 87 6766544 33555554332 10 1356778887765679999998766411
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++|||++. ++++++..++.|+++++.
T Consensus 348 -----------------~~~~iRis~~~--~~~~l~~~l~~l~~~l~~ 376 (378)
T PRK07682 348 -----------------GEGFIRCSYAT--SLEQLQEAMKRMKRFVEN 376 (378)
T ss_pred -----------------CCCeEEEEeCC--CHHHHHHHHHHHHHHHhh
Confidence 15899999983 789999999999988754
|
|
| >COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.8e-23 Score=213.80 Aligned_cols=330 Identities=18% Similarity=0.134 Sum_probs=231.4
Q ss_pred CCCCCceEEecCCCCCCCh-HHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC-CCCCCcEEEeCChH
Q 038499 72 PFGKRRLTYADHTASGRSL-RYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG-GGQEDAMIFCGSGT 149 (609)
Q Consensus 72 p~g~~~~vyld~~a~g~~~-~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g-~~~~~~vift~sGt 149 (609)
++|....+.++.+.+.-.| +.+.+++.+.+....-.|.. ...++++.+++++| .+++ +|+. |+|+
T Consensus 18 ~~g~~~~i~LssNenP~gp~~~~~~~~~~~~~~~~rYPd~-----------~~~~l~~a~a~~~~~~~~~-~V~~-gnGs 84 (356)
T COG0079 18 QYGLPGIIKLSSNENPYGPPPKVIEAIRAALDKLNRYPDP-----------DYRELRAALAEYYGVVDPE-NVLV-GNGS 84 (356)
T ss_pred ccCCccceeecCCCCCCCCCHHHHHHHHHHHHhhccCCCC-----------cHHHHHHHHHHHhCCCCcc-eEEE-cCCh
Confidence 3444467888888776554 66777777766433222322 25678999999999 5554 6665 5999
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhc
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYK 229 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~ 229 (609)
++.|..+.+++. .+|| .|++..+.|..+...++..|++++.++..+ +.+|++++.+++.
T Consensus 85 de~i~~l~~~~~---------------~~gd--~vl~~~Ptf~~Y~~~a~~~g~~~~~v~~~~-~~~d~~~~~~~~~--- 143 (356)
T COG0079 85 DELIELLVRAFV---------------EPGD--TVLIPEPTFSMYEIAAQLAGAEVVKVPLKE-FRLDLDAILAAIR--- 143 (356)
T ss_pred HHHHHHHHHHhh---------------cCCC--EEEEcCCChHHHHHHHHhcCCeEEEecccc-cccCHHHHHHhhh---
Confidence 999999999884 7888 699999999999999999999999999988 8899999999998
Q ss_pred cCCCceEEEEecccCccccccCHHHHHHHHHHh--CCeEEEeccccCCcccccCCCCCCCCc-cEEEEcCCCCCCCCC-C
Q 038499 230 DAKRPILGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVEIDVRSGQTDGY-DAIFLSTHKFLGGPG-S 305 (609)
Q Consensus 230 ~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~vivD~A~~~~~~~id~~~~~~~~~-D~v~~S~hK~lggp~-g 305 (609)
++++++++|+|+||||...+.++|.+++... +.++++|+|+.-... .+...+....- -++.-|++|++|-++ .
T Consensus 144 --~~~~lv~i~nPNNPTG~~~~~~~l~~l~~~~~~~~~vVvDEAY~eF~~-~~~~~l~~~~~nlivlRTfSKa~gLAGlR 220 (356)
T COG0079 144 --DKTKLVFLCNPNNPTGTLLPREELRALLEALPEGGLVVIDEAYIEFSP-ESSLELLKYPPNLIVLRTFSKAFGLAGLR 220 (356)
T ss_pred --cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhcCC-chhhhhccCCCCEEEEEecHHhhhcchhc
Confidence 5799999999999999999999988888765 789999999542111 11111101111 366669999998654 4
Q ss_pred cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 038499 306 PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (609)
+|+++.++++ ++.+.... ..+++.....++....+.+....+...++..
T Consensus 221 lGy~ia~~~~--i~~l~~vr-----------------------------~p~~v~~~a~~aa~aal~~~~~~~~~~~~~~ 269 (356)
T COG0079 221 VGYAIANPEL--IAALNKVR-----------------------------PPFNVSSPALAAAIAALRDADYLEESVERIR 269 (356)
T ss_pred eeeccCCHHH--HHHHHHhc-----------------------------CCCCCCHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 9999999988 33332111 0111111111111111112334567778888
Q ss_pred HHHHHHHHHhCCCCceE-EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 386 TYIERALERLLPNQNIK-ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
+.++++.+.|+.++ +. ++.+ ..+|.+...+ .. - ...+.+.|.+ .||.+|. |.
T Consensus 270 ~~r~rl~~~l~~~~-~~~v~pS-----~aNFvlv~~~-~~---------------~-~~~l~~~L~~-~giivR~---~~ 322 (356)
T COG0079 270 EERERLYAALKALG-LFGVFPS-----QANFVLVRVP-DA---------------E-AAALAEALLK-KGILVRD---CS 322 (356)
T ss_pred HHHHHHHHHHHhCC-CCeecCC-----CCcEEEEECC-Cc---------------c-HHHHHHHHHH-CCEEEEe---CC
Confidence 88999999999986 55 5433 2555555544 11 1 4578888876 4999993 33
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
. ++ ..++++||+++ |++|.++++++|+++...
T Consensus 323 ~-~~------------------------~~~~~lRitvg---t~een~~ll~AL~~~~~~ 354 (356)
T COG0079 323 S-VG------------------------LLPGYLRITVG---TPEENDRLLAALREVLKG 354 (356)
T ss_pred C-CC------------------------CCCCeEEEEeC---CHHHHHHHHHHHHHHHhc
Confidence 1 11 12589999999 999999999999998764
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.7e-22 Score=227.38 Aligned_cols=383 Identities=16% Similarity=0.122 Sum_probs=239.2
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCc-hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH-HH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDS-YVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAI-KR 155 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~-~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal-~~ 155 (609)
++.+.+ ......+.+++.+.. .+.+.+.|...- ....+..+++.++.+++++++|.+ ++.+..+|++.+. ..
T Consensus 501 ~i~lGs-ct~~~~p~~~~~~~~--~~~f~~~hP~qp~e~~qG~l~~i~e~q~~l~eltG~d---~~sl~~~~ga~ge~ag 574 (954)
T PRK05367 501 MIPLGS-CTMKLNAAAEMIPIT--WPEFANLHPFAPAEQAAGYRELIDQLEAWLAEITGYD---AVSLQPNAGAQGEYAG 574 (954)
T ss_pred eeeCCc-CCCcCCHHHHHHHHh--CccccccCCCChHHHHHHHHHHHHHHHHHHHHHHCCC---CEEECccHHHHHHHHH
Confidence 344555 333444444444432 222333333221 234567789999999999999986 3556555554433 22
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCC--ceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCC
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEE--RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd--~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~ 233 (609)
++.+... .+++|+ +.+|+++...|+++..++...|++++.++.+.+|.+|+++|+++++.+ ..+
T Consensus 575 L~a~r~~------------~~~~G~~~r~~vlis~~aH~snp~sa~~~G~~vv~v~~d~~G~iD~~~L~~~i~~~--~~~ 640 (954)
T PRK05367 575 LLAIRAY------------HESRGEGHRDVCLIPSSAHGTNPASAVMAGMKVVVVACDENGNIDLDDLRAKAEEH--ADN 640 (954)
T ss_pred HHHHHHH------------hhccCCCCCCEEEEEchhhhhhHHHHHHCCCEEEEECCCCCCCcCHHHHHHHHhcc--CCC
Confidence 2211110 023444 457999999999999999999999999999988999999999999741 125
Q ss_pred ceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC-----cEE
Q 038499 234 PILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS-----PGI 308 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g-----~G~ 308 (609)
+.++.++++++..+...|+++|+++||++|+++++|+|+..+...+.- +. ..|+|++++|+||||++|.| +|+
T Consensus 641 la~V~it~pst~G~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~~-pg-~~GADi~~~s~HK~f~~P~G~GGPg~G~ 718 (954)
T PRK05367 641 LAAIMITYPSTHGVFEETIREICEIVHEHGGQVYLDGANMNAQVGLAR-PG-DIGADVSHLNLHKTFCIPHGGGGPGVGP 718 (954)
T ss_pred eEEEEEEcCCCCeeecCCHHHHHHHHHHcCCEEEEECcChhhccCCCC-hh-hcCCCEEEecCcccCCCCcCCCCCceEE
Confidence 677888888877444589999999999999999999999766554431 11 23899999999999976644 679
Q ss_pred EEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHH---HHHH
Q 038499 309 LLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIK---KQEE 385 (609)
Q Consensus 309 L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~---~~~~ 385 (609)
+++++.+ .|..+|..... . .+. . .... ..+.++.+...+..++......|.+.++ ++..
T Consensus 719 l~vr~~l------~p~lpg~~v~~--~----~~~----~-~~g~-v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~ 780 (954)
T PRK05367 719 IGVKAHL------APFLPGHPVQI--A----GGE----T-GIGA-VSAAPFGSASILPISWMYIRMMGAEGLRQATEVAI 780 (954)
T ss_pred Eeecccc------cccCCCCccCc--C----CCC----C-CcCc-chhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
Confidence 9998765 23334432100 0 000 0 0000 0122232222221122222445665554 4444
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
.+++|+.++|++...+...++.. +...-+.|...+ .. .....+..++.+.|.+ +||.+..-. +
T Consensus 781 ~~A~Yl~~~L~~~~~~~~~~~~~-~~~~e~i~~~~~-~~-----------~~~g~~~~di~krL~d-~G~~~~t~~-~-- 843 (954)
T PRK05367 781 LNANYIAKRLKDHYPVLYTGANG-RVAHECILDLRP-LK-----------ESTGITVDDIAKRLID-YGFHAPTMS-F-- 843 (954)
T ss_pred HHHHHHHHHHHhhcCccccCCCC-CcccceEEEeec-cc-----------ccCCCCHHHHHHHHHH-CCCeEeecC-C--
Confidence 89999999998753443333211 111122222221 00 1112467899999965 799876311 1
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhccc--------------ccCC
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQR--------------FLPL 531 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~--------------~~p~ 531 (609)
| .++.+||+++.++|++|+|+++++|+.+..+..+ ..|.
T Consensus 844 p---------------------------v~~~l~i~ptE~~s~~elDr~~~al~~i~~e~~~~~~~~~~~~~~~~~~ap~ 896 (954)
T PRK05367 844 P---------------------------VAGTLMVEPTESESKAELDRFCDAMIAIRAEIDEVEAGEWPAEDNPLKNAPH 896 (954)
T ss_pred c---------------------------cCCEEEEEeeecCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchhhhCCC
Confidence 1 1488999999999999999999999998876543 5566
Q ss_pred CcccccCCceeec
Q 038499 532 YNFNIKTGTWCFM 544 (609)
Q Consensus 532 y~~~~~~~~w~~~ 544 (609)
-.-+...++|.|.
T Consensus 897 ~~~~~~~~~w~~~ 909 (954)
T PRK05367 897 TAADLVADEWDHP 909 (954)
T ss_pred CHHHhccCCCCCC
Confidence 6667777788877
|
|
| >TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-22 Score=217.49 Aligned_cols=343 Identities=17% Similarity=0.126 Sum_probs=222.3
Q ss_pred eEEecCCCCCCC-hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 78 LTYADHTASGRS-LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 78 ~vyld~~a~g~~-~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.+..+...|.. ++.|.+++.+++..+..+... +..-........++++.+++++|.+ +.+++ ++|+.++. .+
T Consensus 48 ~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~--s~~~~g~~~~~~~Le~~la~~~g~~--~~l~~-~sG~~an~-~a 121 (402)
T TIGR01821 48 TVWCSNDYLGMGQHPEVLQAMHETLDKYGAGAGG--TRNISGTNIPHVELEAELADLHGKE--SALVF-TSGYVAND-AT 121 (402)
T ss_pred EEeEccCcCCCCCCHHHHHHHHHHHHHcCCCCcc--hhhhhCCcHHHHHHHHHHHHHhCCC--eEEEE-CchHHHHH-HH
Confidence 445555555554 356889998888764222221 2222234566789999999999963 24555 58877533 34
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceE
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPIL 236 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~l 236 (609)
+..+. ...+++ +|+++..+|.+....++..|+++..++. .|++++++.++.. ..+++++
T Consensus 122 i~~l~-------------~~~~~~--~v~~~~~~h~s~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~-~~~~~~~ 180 (402)
T TIGR01821 122 LATLA-------------KIIPGC--VIFSDELNHASMIEGIRHSGAEKFIFRH-----NDVAHLEKLLQSV-DPNRPKI 180 (402)
T ss_pred HHHhh-------------CCCCCC--EEEEcchHhHHHHHHHHHcCCeEEEECC-----CCHHHHHHHHHhc-cCCCCeE
Confidence 34331 012555 6777778899998899888988876653 3788888888632 1136889
Q ss_pred EEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccc---cC-CCCC-CCCccEEEEcCCCCCCCCCCcEEEEE
Q 038499 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEI---DV-RSGQ-TDGYDAIFLSTHKFLGGPGSPGILLM 311 (609)
Q Consensus 237 v~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~i---d~-~~~~-~~~~D~v~~S~hK~lggp~g~G~L~~ 311 (609)
|++++++|+||.+.|+++|.++|++||+++++|+||+.|.... .. .... ...+|+++.+++|.+|+++ |+++.
T Consensus 181 v~~e~~~~~~G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~G--G~i~~ 258 (402)
T TIGR01821 181 IAFESVYSMDGDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAFGVVG--GYIAA 258 (402)
T ss_pred EEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhhccCC--ceeec
Confidence 9999999999999999999999999999999999998553211 00 0000 1246888889999998655 78888
Q ss_pred echhhccCCCCCCccCCCceEeecccccccccccccccccccCCC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (609)
++++ ++.+.....+ ..+..+. |.....+.++++.. +.. +.+.++.++++++
T Consensus 259 ~~~~--~~~l~~~~~~----------------------~~~t~~~~~~~~aaa~aaL~~~--~~~--~~~~~~~~~~~~~ 310 (402)
T TIGR01821 259 SRKL--IDAIRSYAPG----------------------FIFTTSLPPAIAAGATASIRHL--KES--QDLRRAHQENVKR 310 (402)
T ss_pred CHHH--HHHHHHhCcC----------------------ceecCcCCHHHHHHHHHHHHHh--hcC--HHHHHHHHHHHHH
Confidence 8776 2222111000 0011122 22333334455443 222 4556666788899
Q ss_pred HHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhh
Q 038499 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470 (609)
Q Consensus 391 ~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ 470 (609)
+.+.|+++ +++++.+ ..+++.+.+.. . .....+.+.|.+++||.+++......|.
T Consensus 311 l~~~L~~~-g~~~~~~----~~~i~~i~~~~-~----------------~~a~~~~~~L~~~~Gi~v~~~~~p~~~~--- 365 (402)
T TIGR01821 311 LKNLLEAL-GIPVIPN----PSHIVPVIIGD-A----------------ALCKKVSDLLLNKHGIYVQPINYPTVPR--- 365 (402)
T ss_pred HHHHHHHc-CCCcCCC----CCCEEEEEeCC-H----------------HHHHHHHHHHHhcCCEEEEeECCCCCCC---
Confidence 99999876 6666543 34555554322 1 1245788887666799998643222111
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
...++||+++.++|++|+++++++|+++.++.
T Consensus 366 -----------------------g~~~lRis~~~~~t~edi~~~~~~l~~~~~~~ 397 (402)
T TIGR01821 366 -----------------------GTERLRITPTPAHTDKMIDDLVEALLLVWDRL 397 (402)
T ss_pred -----------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHc
Confidence 13689999999999999999999999998753
|
This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives. |
| >PLN00145 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-22 Score=216.74 Aligned_cols=349 Identities=13% Similarity=0.009 Sum_probs=225.4
Q ss_pred ceEEecCCCC-----CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEEe
Q 038499 77 RLTYADHTAS-----GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG------GQEDAMIFC 145 (609)
Q Consensus 77 ~~vyld~~a~-----g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~------~~~~~vift 145 (609)
+++.|..... -+.++.+.+++.+.+.....+. |.. .....++|+.++++++. +++ +|++|
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~~~----Y~~----~~G~~~lr~aia~~~~~~~~~~~~~~-~v~it 123 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKYNS----YST----CVGLLPARRAIAEYLSRDLPYELSTD-DIYLT 123 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcCCC----CCC----CccCHHHHHHHHHHHhhccCCCCChh-hEEEe
Confidence 5777766532 3456788888887775321111 111 11245677777777642 444 89998
Q ss_pred CChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHH
Q 038499 146 GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRS 223 (609)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~ 223 (609)
+|++++|..++..+ +++|| .|+++.+.|+.+.......|++++.+++.+ ++.+|+++|++
T Consensus 124 -~G~~~al~l~~~~l---------------~~~Gd--~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 185 (430)
T PLN00145 124 -AGCAQAIEIIMSVL---------------AQPGA--NILLPRPGYPLYEARAVFSGLEVRHFDLLPERGWEVDLEGVEA 185 (430)
T ss_pred -CCHHHHHHHHHHHh---------------cCCCC--EEEEcCCCCccHHHHHHHcCCEEEEeeCCcccCCcCCHHHHHH
Confidence 89999999998877 37888 699999999988877888899999998743 56899999999
Q ss_pred HHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEEcC
Q 038499 224 KLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFLST 296 (609)
Q Consensus 224 al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~S~ 296 (609)
+++ ++++++++++|+||||.+.+ +++|+++|++||+++|+|+++.... ..+.+........-+++.|+
T Consensus 186 ~~~-----~~~~~i~i~~P~NPtG~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 260 (430)
T PLN00145 186 LAD-----ENTVAMVIINPNNPCGSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSI 260 (430)
T ss_pred HhC-----cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEecc
Confidence 887 68999999999999999998 6778899999999999999965321 11222111111234777799
Q ss_pred CCCCCCCC-CcEEEEEe--chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH
Q 038499 297 HKFLGGPG-SPGILLMT--KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE 373 (609)
Q Consensus 297 hK~lggp~-g~G~L~~~--~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~ 373 (609)
+|.++.|+ .+|++++. +.+ +....-. ..+.. ......+++.+.+. ++..++.+
T Consensus 261 SK~~~~pG~RlG~iv~~~~~~~--~~~~~~~------------------~~~~~-~~~~~~~~~~~~Q~---a~~~~l~~ 316 (430)
T PLN00145 261 SKRWVVPGWRLGWIATCDPNGI--LKETKVV------------------DSIRN-YLNISTDPATFVQG---AIPQIIAN 316 (430)
T ss_pred ccccCCCCeeEEEEEEecchhh--hhhhHHH------------------HHHHH-HhcccCCCCHHHHH---HHHHHHhc
Confidence 99987664 59999984 232 1110000 00000 00001122233332 22222221
Q ss_pred --hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 038499 374 --YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLND 451 (609)
Q Consensus 374 --~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 451 (609)
....+.+.++.++.++.+.+.|+.++++..... +..+++.|.-.+ ... -....+..+++..|.+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~---P~ga~y~~v~l~-~~~----------~~~~~~~~~~~~~ll~ 382 (430)
T PLN00145 317 TKEEFFTKTLGLLKETADICYEKIKEIKCITCPHK---PEGSMFVMVKLD-LSC----------LSGIKDDMDFCCKLAK 382 (430)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcC---CCeeeEEEeccC-hhh----------cCCCCCHHHHHHHHHH
Confidence 223566677788888899999998888765321 234555554333 100 0000134566766667
Q ss_pred hcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 452 LFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 452 ~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
+.||.+.+|..|. .++|+||++. .+.++++..++.|+.++.+-.
T Consensus 383 ~~gV~v~pG~~fg-----------------------------~~~~lRis~~--~~~~~l~~al~rl~~~~~~~~ 426 (430)
T PLN00145 383 EESVVVLPGSALG-----------------------------MKNWLRITFA--IDPPSLEDGLERLKSFCLRHA 426 (430)
T ss_pred hCCEEEeCccccC-----------------------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhc
Confidence 7899999887653 1489999998 478888888888888776543
|
|
| >PLN02721 threonine aldolase | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.4e-23 Score=216.35 Aligned_cols=295 Identities=17% Similarity=0.175 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhc-CCCceEEEECCCCccchHH---HH
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLR-DEERWVVFVGPHEHHSNLL---SW 198 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~-~gd~~~Vlv~~~~h~s~~~---~~ 198 (609)
..++++.+++++|.+. ++++++|+.+++ .++.++ .. +|| .|+++..+|.+... ..
T Consensus 42 ~~~l~~~la~~~~~~~---~~~~~~Gs~a~~-~~l~~~---------------~~~~gd--~Vl~~~~~~~~~~~~~~~~ 100 (353)
T PLN02721 42 ALRLEEEMAKIFGKEA---ALFVPSGTMGNL-ISVLVH---------------CDVRGS--EVILGDNSHIHLYENGGIS 100 (353)
T ss_pred HHHHHHHHHHHhCCce---eEEecCccHHHH-HHHHHH---------------ccCCCC--eEEEcCccceehhcccchh
Confidence 5789999999999853 456668887755 333332 24 788 69999999876665 35
Q ss_pred HHcCceEEEEecCCCCCCCHHHHHHHHhhhcc--CCCceEEEEecc-cCccccccC---HHHHHHHHHHhCCeEEEeccc
Q 038499 199 RQSLAEVVEIGLDDDGLLDIEALRSKLELYKD--AKRPILGSFSAC-SNVTGIYSD---TRSIARLLHQYGGFACFDFAA 272 (609)
Q Consensus 199 ~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~--~~~~~lv~~s~~-sn~TG~~~d---l~~I~~la~~~g~~vivD~A~ 272 (609)
...|++++.++.++++.+|+++|++++++... .+++++++++++ +|+||.+.| +++|.++|++||+++++|+|+
T Consensus 101 ~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 101 TLGGVHPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred hhcCceeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEchh
Confidence 56799999999888888999999999973210 136889999775 678999877 679999999999999999997
Q ss_pred cCCcc---cccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccc
Q 038499 273 SGPYV---EIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 273 ~~~~~---~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (609)
..+.. ..++... ..++|.++.|+||++++|.| |+++.++++ ++.+.....
T Consensus 181 ~~~~~~~~~~~~~~~-~~~~d~~~~s~sK~l~~~~G-~~~~~~~~~--~~~~~~~~~----------------------- 233 (353)
T PLN02721 181 IFNASVALGVPVHRL-VKAADSVSVCLSKGLGAPVG-SVIVGSKSF--IRKAKRLRK----------------------- 233 (353)
T ss_pred hhcchhhhCCCHHHH-hhhCCEEEEecccccCCcee-eEEecCHHH--HHhHHHHHH-----------------------
Confidence 64321 1111111 12679999999999998764 456677776 333211100
Q ss_pred ccccCCChh-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEE-eCCCCCCCcceEEEEeccCCCCCc
Q 038499 350 ERESGGTPQ-VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKI-LGNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 350 ~r~~~gtp~-i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v-~~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
.. .+++. +.....+++..+ .+ ..+.+ ++..++++++.+.|++++++++ +.+ +..+++++.+.. .
T Consensus 234 -~~-~~~~~~~~~~~~~~~~~l-~~--~~~~~-~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~~~~~~~~~~-~---- 299 (353)
T PLN02721 234 -TL-GGGMRQVGVLAAAALVAL-QE--NVPKL-EDDHKKAKLLAEGLNQIKGLRVNVAA---VETNIVYFDITD-G---- 299 (353)
T ss_pred -hc-CCCeehhHHHHHHHHHHH-HH--HHHHH-HHHHHHHHHHHHHHHhCCCcEEecCC---ccceEEEEEccC-C----
Confidence 00 11111 111111111111 11 12222 3335567889999988888865 433 234555555432 1
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC
Q 038499 428 LGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS 507 (609)
Q Consensus 428 ~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t 507 (609)
...+...+++.|. ..||.++++. ++++|++++++++
T Consensus 300 ----------~~~~~~~~~~~L~-~~gi~v~~~~---------------------------------~~~lR~~~~~~~~ 335 (353)
T PLN02721 300 ----------SRITAEKLCKSLE-EHGVLLMPGN---------------------------------SSRIRVVTHHQIS 335 (353)
T ss_pred ----------ccccHHHHHHHHH-hCCcEEecCC---------------------------------CceEEEEecCcCC
Confidence 0124678999996 4699998541 4789999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 038499 508 NEEFEFTLEALEFIAI 523 (609)
Q Consensus 508 ~eeid~ll~al~~v~~ 523 (609)
++|+++++++|++++.
T Consensus 336 ~~~i~~~~~~l~~~~~ 351 (353)
T PLN02721 336 DSDVQYTLSCFQQAAL 351 (353)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999998764
|
|
| >PRK05958 8-amino-7-oxononanoate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-22 Score=216.64 Aligned_cols=333 Identities=15% Similarity=0.117 Sum_probs=218.9
Q ss_pred EecCCCC---CC-ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 80 YADHTAS---GR-SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 80 yld~~a~---g~-~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
|+|..++ |. .++.|.+++.+.+..+ +.... .+...........++++.+++++|.+ +.++++ +|+.+++.
T Consensus 41 ~id~~~~~~~g~~~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~~-~g~~~~~~- 114 (385)
T PRK05958 41 MLNFASNDYLGLARHPRLIAAAQQAARRY-GAGSG-GSRLVTGNSPAHEALEEELAEWFGAE--RALLFS-SGYAANLA- 114 (385)
T ss_pred EEEeeCCCcccCCCCHHHHHHHHHHHHhc-CCCCC-CcCcccCCcHHHHHHHHHHHHHhCCC--cEEEEC-cHHHHHHH-
Confidence 5565544 43 5678999998888643 22111 11112223556788999999999952 245554 78876554
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++..+ +++|| .|++++++|+++...+...|++++.++. .|+++++++++.. .++++
T Consensus 115 ~l~~~---------------~~~gd--~V~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~i~~~--~~~~~ 170 (385)
T PRK05958 115 VLTAL---------------AGKGD--LIVSDKLNHASLIDGARLSRARVRRYPH-----NDVDALEALLAKW--RAGRA 170 (385)
T ss_pred HHHHh---------------CCCCC--EEEEeCccCHHHHHHHHhcCCceEEeCC-----CCHHHHHHHHHhc--cCCCe
Confidence 43443 37888 7999999999999888888999998875 3889999998741 01467
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc---C---CCCCCCCccEEEEcCCCCCCCCCCcEEE
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID---V---RSGQTDGYDAIFLSTHKFLGGPGSPGIL 309 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id---~---~~~~~~~~D~v~~S~hK~lggp~g~G~L 309 (609)
++++++++|+||.+.|+++|.++|++||+++|+|++++.+..... . ........++++.|+||++|+ .| |++
T Consensus 171 lvi~~~~~~~~G~~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~-~G-g~~ 248 (385)
T PRK05958 171 LIVTESVFSMDGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGS-SG-AAV 248 (385)
T ss_pred EEEEEecccCCCCcCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhccc-CC-cEE
Confidence 888888999999999999999999999999999999976533211 0 011111335788999999974 44 888
Q ss_pred EEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI-QMIRAALAFWVKEYIGHEVIKKQEETYI 388 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~-~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (609)
+.++++. +.+..... ......+.+++. ..+.+++.+. +. . +.+.++..+++
T Consensus 249 ~~~~~~~--~~~~~~~~----------------------~~~~~~~~~~~~~aa~~aal~~~--~~-~-~~~~~~~~~~~ 300 (385)
T PRK05958 249 LGSETLI--DYLINRAR----------------------PFIFTTALPPAQAAAARAALRIL--RR-E-PERRERLAALI 300 (385)
T ss_pred EcCHHHH--HHHHHhCc----------------------cceecCCCCHHHHHHHHHHHHHH--hc-C-HHHHHHHHHHH
Confidence 8887762 22110000 000111122221 2223344332 21 2 56778888899
Q ss_pred HHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh
Q 038499 389 ERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG 468 (609)
Q Consensus 389 ~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~ 468 (609)
+++.+.|+++ ++++..+ ..+++++.+.. . .+..++.+.|.+ .||.++++.....+.
T Consensus 301 ~~l~~~L~~~-~~~~~~~----~~~~~~~~~~~-~----------------~~~~~~~~~l~~-~gI~v~~~~~~~~~~- 356 (385)
T PRK05958 301 ARLRAGLRAL-GFQLMDS----QSAIQPLIVGD-N----------------ERALALAAALQE-QGFWVGAIRPPTVPA- 356 (385)
T ss_pred HHHHHHHHHc-CCCcCCC----CCCEEEEEeCC-H----------------HHHHHHHHHHHH-CCceEecccCCCCCC-
Confidence 9999999876 5665433 34566665532 1 245678888866 599998632211110
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.++++||+++.+++++|+++++++|+++
T Consensus 357 -------------------------~~~~lRis~~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 357 -------------------------GTSRLRITLTAAHTEADIDRLLEALAEA 384 (385)
T ss_pred -------------------------CCceEEEEecCCCCHHHHHHHHHHHHhc
Confidence 1368999999999999999999999875
|
|
| >TIGR03537 DapC succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.5e-22 Score=211.14 Aligned_cols=323 Identities=17% Similarity=0.112 Sum_probs=213.4
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
++.+.+++.+........++ ..+...+++.+.+++.+..|. +++++|++| +|++.++..++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit-~Gs~~ai~~~~~~~~------ 81 (350)
T TIGR03537 15 PPFIRKALIDAVPEVSQYPS------ALGTKALREAISGWFERRFGVKLDPDAQVLPS-AGSKEAIFHFPLVFI------ 81 (350)
T ss_pred CHHHHHHHHHHHhccCCCCC------CCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEc-CChHHHHHHHHHHHc------
Confidence 55677777665432211111 112234444555555544574 443378888 899999999887763
Q ss_pred HHHHHHhhhcCCC-ceEEEECCCCccchHHHHHHcCceEEEEecCC-C-CCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 168 LREKLIKCLRDEE-RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-D-GLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 168 ~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~-g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
++|| ...|+++.+.|+.+...++..|++++.++++. + ..+|++++++++. ++++++++++++|
T Consensus 82 ---------~~g~~~d~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-----~~~~~i~i~~p~N 147 (350)
T TIGR03537 82 ---------DPEEDRRRVIFGTPGYPVYERGALFAGGEPTAVKLKKEDGFLLRLEKVEKSIL-----EETKIVWINYPHN 147 (350)
T ss_pred ---------CCCCCCceEEEcCCCCcchHHHHHhcCCEEEEcccCcccCCccCHHHHHHhhh-----hccEEEEEeCCCC
Confidence 5652 12799999999999999999999999999874 3 4589999999987 5799999999999
Q ss_pred ccccccC---HHHHHHHHHHhCCeEEEeccccCCc---ccccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhc
Q 038499 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPY---VEIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQ 317 (609)
Q Consensus 245 ~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~---~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~ 317 (609)
|||.+.| +++|+++|++||+++|+|++++... ....+.... ....+++.|++|.+|.|+ .+|+++.++++
T Consensus 148 PtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~-~~~~i~~~s~SK~~g~~GlRiG~~~~~~~~-- 224 (350)
T TIGR03537 148 PTGATAPRSYLKETIAMCREHGIILCSDECYTEIYFGEPPHSALEVG-IENVLAFHSLSKRSGMTGYRSGFVAGDEKL-- 224 (350)
T ss_pred CcCcccCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCchhhcC-cCCEEEEeecccccCCccccceeeecCHHH--
Confidence 9999998 7889999999999999999976321 111222211 123477779999997654 48999988776
Q ss_pred cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 318 LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
++.+... ......+++...+.+. ...+. +....+.++++.++.++.+.+.|+.
T Consensus 225 ~~~~~~~------------------------~~~~~~~~~~~~q~~~--~~~l~-~~~~~~~~r~~l~~~~~~~~~~l~~ 277 (350)
T TIGR03537 225 ISFLRKL------------------------RANFGVASPDFVQAAA--KAAWS-DDNHVLERRKIFKRKRDLFIEFFNK 277 (350)
T ss_pred HHHHHHH------------------------HHhhccCCCHHHHHHH--HHHhC-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 0111123333333221 12221 2223455667777778888888887
Q ss_pred CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChh
Q 038499 398 NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEA 477 (609)
Q Consensus 398 ~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~ 477 (609)
. ++++..+ ..+.+.+...+ .. .+...+++.|.+ .||.+++|..|...
T Consensus 278 ~-g~~~~~~----~g~~~~~~~~~-~~---------------~~~~~l~~~L~~-~gv~v~~g~~f~~~----------- 324 (350)
T TIGR03537 278 V-GLEYLYP----DATFYLWVKVP-SG---------------IDAKDYALRLLE-NGIVVAPGENFGSG----------- 324 (350)
T ss_pred C-CCcccCC----CeEEEEEEECC-CC---------------CCHHHHHHHHHH-CCEEEcCchhhCCC-----------
Confidence 6 6666543 23554444444 11 356788898876 59999988765311
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 478 QSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
.++++||++. .++++++..++.++.
T Consensus 325 ----------------~~~~~Ri~~~--~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 325 ----------------EEGYVRVALV--PTLEECEEALRLWER 349 (350)
T ss_pred ----------------CCCEEEEEec--CCHHHHHHHHHHHhc
Confidence 1489999985 578999998888764
|
Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade. |
| >PRK08153 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-22 Score=213.66 Aligned_cols=328 Identities=15% Similarity=0.073 Sum_probs=219.3
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
..+.|+.+..+ +.++.+.+++.+.+...+..+.. ...++|+.|+++++.+++ +|+++ +|++++|..
T Consensus 33 ~~~~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~~-----------~~~~Lr~~ia~~~~~~~~-~I~it-~G~~~~l~~ 99 (369)
T PRK08153 33 FRARIGANESGFGPSPSVIAAMREAAAEIWKYGDP-----------ENHDLRHALAAHHGVAPE-NIMVG-EGIDGLLGL 99 (369)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHHHhhcCCCC-----------ccHHHHHHHHHHhCCCHH-HEEEc-CCHHHHHHH
Confidence 34567666544 45667888887665322111111 145799999999999876 89998 899999999
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++..+ +++|| .|++..+.|+.+...+...|++++.++.+.++ +|++++++++.. ++++
T Consensus 100 ~~~~~---------------~~~gd--~vlv~~p~y~~~~~~~~~~g~~~~~vp~~~~~-~~~~~l~~~~~~----~~~~ 157 (369)
T PRK08153 100 IVRLY---------------VEPGD--PVVTSLGAYPTFNYHVAGFGGRLVTVPYRDDR-EDLDALLDAARR----ENAP 157 (369)
T ss_pred HHHHh---------------cCCCC--EEEECCCcchHHHHHHHHcCCeEEEeeCCCCC-CCHHHHHHHhcc----cCCc
Confidence 88876 37888 79999999999888888899999999987664 799999887753 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHHh--CCeEEEeccccCCcc---cccCCCCCCCCccEEEEcCCCCCCCCC-CcEEE
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYV---EIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGIL 309 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~vivD~A~~~~~~---~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L 309 (609)
++++++|+||||.+.+.+++.++++.+ ++++|+|+++..-.. ...+... ....+++.|++|.+|.|+ .+|++
T Consensus 158 ~i~l~~P~NPtG~~~~~~~l~~l~~~~~~~~~lI~DE~y~~~~~~~~~~~~~~~--~~~~i~~~SfSK~~g~~GlRiG~~ 235 (369)
T PRK08153 158 LVYLANPDNPMGSWHPAADIVAFIEALPETTLLVLDEAYCETAPAGAAPPIDTD--DPNVIRMRTFSKAYGLAGARVGYA 235 (369)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEeCchhhhcCcccchhhhhc--CCCEEEEecchHhccCcchheeee
Confidence 999999999999999998887777654 899999999653211 1111111 122477889999998443 58999
Q ss_pred EEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIE 389 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (609)
++++++ ++.+... .. ..+.+.+.+. ++.+ .+.+....+.+.+..++.++
T Consensus 236 v~~~~~--~~~l~~~------------------------~~--~~~~s~~~q~--~~~~-~l~~~~~~~~~~~~~~~~r~ 284 (369)
T PRK08153 236 IGAPGT--IKAFDKV------------------------RN--HFGMNRIAQA--AALA-ALKDQAYLAEVVGKIAAARD 284 (369)
T ss_pred ecCHHH--HHHHHHh------------------------hc--CCCCCHHHHH--HHHH-HhcCHHHHHHHHHHHHHHHH
Confidence 998877 2222110 00 0122222221 1112 22222234566677777888
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEec-cCcccCChhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQAR-GGCACAGPYG 468 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~-~G~~ca~p~~ 468 (609)
++.+.|++. ++.+. + ..+++.+...+ .. ......+.+.|.+ .||.++ +|.. .
T Consensus 285 ~~~~~L~~~-g~~~~-p----~~~~f~~~~~~-~~--------------~~~a~~l~~~l~~-~Gi~v~~p~~~-~---- 337 (369)
T PRK08153 285 RIAAIARAN-GLTPL-P----SATNFVAIDCG-RD--------------GAFARAVLDGLIA-RDIFVRMPGVA-P---- 337 (369)
T ss_pred HHHHHHHHC-CCccC-C----CcCcEEEEECC-CC--------------cccHHHHHHHHHH-CCeEEeeCCCC-C----
Confidence 888888765 56543 2 12333333322 10 0245677887765 599996 3210 0
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
.++++||+++ +++|+++++++|+++....++
T Consensus 338 -------------------------~~~~iRis~~---~~~~~~~~~~al~~~~~~~~~ 368 (369)
T PRK08153 338 -------------------------LDRCIRVSCG---PDEELDLFAEALPEALEAARK 368 (369)
T ss_pred -------------------------CCCeEEEecC---CHHHHHHHHHHHHHHHHHhhc
Confidence 1479999997 899999999999999876654
|
|
| >PRK08912 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=216.55 Aligned_cols=334 Identities=13% Similarity=-0.004 Sum_probs=217.1
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
.|+.+.+++.+.+.+. .. .|....+..++++.+.+++.+..|. +++++|++| +|++.++..++..+
T Consensus 40 ~p~~~~~~~~~~~~~~----~~-~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~i~~t-~G~~~al~~~~~~~------ 107 (387)
T PRK08912 40 GPEDVRRAAADALLDG----SN-QYPPMMGLPELRQAVAAHYARFQGLDLDPETEVMVT-SGATEALAAALLAL------ 107 (387)
T ss_pred CCHHHHHHHHHHHhcC----CC-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCcccEEEe-CCcHHHHHHHHHHh------
Confidence 3556777766655321 11 1212222344555555555555564 343378998 78888898877765
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCc
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~ 245 (609)
+++|| .|+++.+.|+.+...++..|++++.++++. ++.+|+++|++++. ++++++++++++||
T Consensus 108 ---------~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~v~l~~p~NP 171 (387)
T PRK08912 108 ---------VEPGD--EVVLFQPLYDAYLPLIRRAGGVPRLVRLEPPHWRLPRAALAAAFS-----PRTKAVLLNNPLNP 171 (387)
T ss_pred ---------cCCCC--EEEEeCCCchhhHHHHHHcCCEEEEEecCcccCcCCHHHHHHHhC-----ccceEEEEeCCCCC
Confidence 37888 699999999999888899999999999875 57899999999987 57899999999999
Q ss_pred cccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCC-CCCccEEEEcCCCCCCCC-CCcEEEEEechhh
Q 038499 246 TGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQ-TDGYDAIFLSTHKFLGGP-GSPGILLMTKALY 316 (609)
Q Consensus 246 TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~-~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~ 316 (609)
||.+.+ +++|.++|++|++++|+|++++... ....+.... ..+.++++.|++|.+|-| ..+|++++++++
T Consensus 172 tG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~- 250 (387)
T PRK08912 172 AGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGWKVGFVCAAPPL- 250 (387)
T ss_pred cCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhhccCcCceeEEEecCHHH-
Confidence 999988 5668999999999999999975211 111111110 124578999999999833 349999999887
Q ss_pred ccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
++.+... ......+++...+. ++...+.......+.++++.++.++++.+.|+
T Consensus 251 -~~~l~~~------------------------~~~~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 303 (387)
T PRK08912 251 -LRVLAKA------------------------HQFLTFTTPPNLQA--AVAYGLGKPDDYFEGMRADLARSRDRLAAGLR 303 (387)
T ss_pred -HHHHHHH------------------------HhhccccCChHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322111 00001122222221 11111111112245667778888889999998
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
.+ ++.+..+ ..+.+.+...+ .. +...+...+++.|.++.||.+.+|..|.+...
T Consensus 304 ~~-g~~~~~~----~g~~~l~~~l~-~~------------~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~-------- 357 (387)
T PRK08912 304 RI-GFPVLPS----QGTYFLTVDLA-PL------------GLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDP-------- 357 (387)
T ss_pred hC-CCcccCC----CcceEEEeccc-cc------------CCCCCHHHHHHHHHhcCCEEEecchhhCCCCC--------
Confidence 87 6776654 23444444333 10 01135667888876667999998876542100
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++|+||+++. .+++++..++.|+..+.
T Consensus 358 -----------------~~~~iRl~~~~--~~~~l~~~l~rl~~~l~ 385 (387)
T PRK08912 358 -----------------VTSVVRFCFAK--RDATLDEAVERLAAARR 385 (387)
T ss_pred -----------------CCCEEEEEEeC--CHHHHHHHHHHHHHHHh
Confidence 14899999984 57888888888877654
|
|
| >PLN02187 rooty/superroot1 | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-22 Score=216.82 Aligned_cols=348 Identities=12% Similarity=0.054 Sum_probs=222.6
Q ss_pred CCceEEecCCCCC-----CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC------CCCCCcEE
Q 038499 75 KRRLTYADHTASG-----RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG------GGQEDAMI 143 (609)
Q Consensus 75 ~~~~vyld~~a~g-----~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g------~~~~~~vi 143 (609)
.+++++|..+-.. +.++.+++++.+.+..- ... .|....+ ..++|+.++++++ .+++ +|+
T Consensus 65 ~~~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~---~~~-~Y~~~~G----~~~lR~aiA~~~~~~~~~~~~~~-~I~ 135 (462)
T PLN02187 65 NKTILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSG---KGN-SYGPGAG----ILPARRAVADYMNRDLPHKLTPE-DIF 135 (462)
T ss_pred CCCeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCC---CCC-CCCCCCC----hHHHHHHHHHHHHHhcCCCCCcc-cEE
Confidence 4678888877332 34567888887766521 111 1111112 4456666666663 4665 899
Q ss_pred EeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC--CCCCCCHHHH
Q 038499 144 FCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD--DDGLLDIEAL 221 (609)
Q Consensus 144 ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~g~ld~e~L 221 (609)
+| +|++++|..++.++ +++|| .|+++.+.|+.+...++..|++++.+++. .++.+|+++|
T Consensus 136 it-~G~~~al~~~~~~l---------------~~pGd--~Vlv~~P~y~~y~~~~~~~g~~~~~~~l~~~~~~~~d~~~l 197 (462)
T PLN02187 136 LT-AGCNQGIEIVFESL---------------ARPNA--NILLPRPGFPHYDARAAYSGLEVRKFDLLPEKEWEIDLEGI 197 (462)
T ss_pred Ee-CCHHHHHHHHHHHh---------------cCCCC--EEEEeCCCCccHHHHHHHcCCEEEEEeCccccCCccCHHHH
Confidence 98 89999999998887 37899 69999999999888888899999999874 3578999999
Q ss_pred HHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEE
Q 038499 222 RSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFL 294 (609)
Q Consensus 222 ~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~ 294 (609)
+++++ ++++++++++|+||||.+.+ +++|+++|++||+++|+|+++..-. ....+........-+++.
T Consensus 198 ~~~~~-----~~~~~v~i~nP~NPTG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~ 272 (462)
T PLN02187 198 EAIAD-----ENTVAMVVINPNNPCGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLA 272 (462)
T ss_pred HHhcC-----CCcEEEEEeCCCCCCCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEe
Confidence 99887 57899999999999999988 6778899999999999999976311 111222221111246777
Q ss_pred cCCCCCCCCC-CcEEEEEec-h-hhc-cCCCCCCccCCCceEeecccccccccccccccccccC--CChhHHHHHHHHHH
Q 038499 295 STHKFLGGPG-SPGILLMTK-A-LYQ-LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG--GTPQVIQMIRAALA 368 (609)
Q Consensus 295 S~hK~lggp~-g~G~L~~~~-~-~~~-l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~--gtp~i~~~~~aal~ 368 (609)
|++|.++.|+ .+|++++.+ + ... ++.+... ...... +.+.+.+.+ +.+
T Consensus 273 SfSK~f~~pGlRiG~~v~~~p~~~~~~~~~~~~~------------------------~~~~~~~~~~s~~~Q~a--~~~ 326 (462)
T PLN02187 273 GISKGWVVPGWKIGWIALNDPEGVFETTKVLQSI------------------------KQNLDVTPDPATIIQAA--LPA 326 (462)
T ss_pred cchhhcCCccceeEEEEecCchhHHHHHHHHHHH------------------------HHhccccCCCCHHHHHH--HHH
Confidence 9999988664 599999842 2 100 0111000 000111 122333321 122
Q ss_pred HHHHH--hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHH
Q 038499 369 FWVKE--YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVA 446 (609)
Q Consensus 369 ~~~~~--~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 446 (609)
+ +.+ ....+.+++..++.++++.+.|++++++..... +..+++.|.-.+... .....+..+++
T Consensus 327 ~-L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~---P~gg~fl~~~l~~~~-----------~~~~~~~~~~~ 391 (462)
T PLN02187 327 I-LEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKK---PESCTYLLTKLELSL-----------MDNIKDDIDFC 391 (462)
T ss_pred H-HhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCC---CCEeEEEEeecChhh-----------CCCCCCHHHHH
Confidence 2 221 123456667777788889999988765432211 233455554322000 00001344555
Q ss_pred HHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 447 TLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 447 ~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
..|..+.||.+++|..|. .++|+||+++ ..++.++..++.|..+++...
T Consensus 392 ~~ll~~~gV~v~pG~~fg-----------------------------~~~~iRis~~--~~~e~l~~al~rL~~~l~~~~ 440 (462)
T PLN02187 392 VKLAREENLVFLPGDALG-----------------------------LKNWMRITIG--VEAHMLEDALERLKGFCTRHA 440 (462)
T ss_pred HHHHhhCCEEEECccccC-----------------------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHHHhh
Confidence 555456799999887653 1489999998 468889999999998886543
|
|
| >PRK06290 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-22 Score=212.19 Aligned_cols=346 Identities=12% Similarity=0.048 Sum_probs=220.7
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHHHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG---GGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g---~~~~~~vift~sGttaal 153 (609)
++.|..+... ..++.+.+++.+.+... ....|. ..+...+++.+.+++.+..| .+++++|++| +|++++|
T Consensus 46 ~i~L~~g~p~~~~~~~~~~~l~~~~~~~----~~~~Y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it-~Gs~~al 119 (410)
T PRK06290 46 LIDMGVGEPDEMADESVVEVLCEEAKKP----ENRGYA-DNGIQEFKEAAARYMEKVFGVKDIDPVTEVIHS-IGSKPAL 119 (410)
T ss_pred eEEcCCCCCCCCCCHHHHHHHHHHHhCC----CCCCCC-CCCcHHHHHHHHHHHHHHcCCCcCCCcceEEEc-cCHHHHH
Confidence 4444433322 23455677776544311 110111 11233444444444444445 3343368888 8999999
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhhccC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELYKDA 231 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~~~~ 231 (609)
..++.++ +++|| .|+++.+.|+.+...++..|++++.++++++ +.+|++++++++.
T Consensus 120 ~~~~~~~---------------~~~gd--~Vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~----- 177 (410)
T PRK06290 120 AMLPSCF---------------INPGD--VTLMTVPGYPVTGTHTKYYGGEVYNLPLLEENNFLPDLDSIPKDIK----- 177 (410)
T ss_pred HHHHHHh---------------CCCCC--EEEEeCCCCccHHHHHHHcCCEEEEEecCCCcCCcCCHHHHHHhhc-----
Confidence 9988876 37888 7999999999988888899999999999753 5679999999887
Q ss_pred CCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCc---ccccCCCCC-CCCccEEEEcCCCCCCCCC
Q 038499 232 KRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY---VEIDVRSGQ-TDGYDAIFLSTHKFLGGPG 304 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~---~~id~~~~~-~~~~D~v~~S~hK~lggp~ 304 (609)
++++++++++|+||||.+.+. ++|.++|++||+++++|+++.... .+..+.... ..+.++++.|++|.+|.|+
T Consensus 178 ~~~k~i~l~nP~NPTG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~G 257 (410)
T PRK06290 178 EKAKLLYLNYPNNPTGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTG 257 (410)
T ss_pred ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCCCCcChhcCCCccccEEEEeechhhcCCch
Confidence 579999999999999999995 678888999999999999976421 111221111 1235688899999997554
Q ss_pred -CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHH
Q 038499 305 -SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQ 383 (609)
Q Consensus 305 -g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~ 383 (609)
.+|++++++++ ++.+... ......+++.+.+. ++.. ++.+....+.++++
T Consensus 258 lRiG~ii~~~~l--~~~l~~~------------------------~~~~~~~~~~~~q~--aa~~-~l~~~~~~~~~~~~ 308 (410)
T PRK06290 258 WRLAFVVGNELI--VKAFATV------------------------KDNNDSGQFIAIQK--AGIY-ALDHPEITEKIREK 308 (410)
T ss_pred hheEeEEeCHHH--HHHHHHH------------------------HhccccCCcHHHHH--HHHH-HhhCcHHHHHHHHH
Confidence 48999998877 3222110 00011222223332 2222 22222224566777
Q ss_pred HHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCccc
Q 038499 384 EETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
.++.++++.+.|.+. ++.+..+ ..+++.|...+.... ..-...+...+++.|.+..+|.+.+|..|
T Consensus 309 ~~~~~~~l~~~L~~~-g~~~~~p----~g~f~l~v~lp~~~~---------~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~ 374 (410)
T PRK06290 309 YSRRLDKLVKILNEV-GFKAEMP----GGTFYLYVKAPKGTK---------SGIKFENAEEFSQYLIKEKLISTVPWDDA 374 (410)
T ss_pred HHHHHHHHHHHHHhC-CCeecCC----CeeeEEEEECCCccc---------cCCCCCCHHHHHHHHHHhCCEEEECCccc
Confidence 777888888999887 7776644 335555544430110 00001256788898887756666554321
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHhc
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP-YYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~-~~~t~eeid~ll~al~~v~~~~ 525 (609)
++++||+++ .-.++++.++++++|++.+.+.
T Consensus 375 -------------------------------~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~~~ 406 (410)
T PRK06290 375 -------------------------------GHFLRFSVTFEAKDEEEEDRILEEIKRRLSDV 406 (410)
T ss_pred -------------------------------cCeEEEEEEcccccccchhHHHHHHHHHHhhc
Confidence 379999995 4458899999999999988664
|
|
| >PRK13393 5-aminolevulinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.8e-22 Score=215.09 Aligned_cols=345 Identities=16% Similarity=0.087 Sum_probs=225.8
Q ss_pred CceEEecCCCCCC-ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 76 RRLTYADHTASGR-SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 76 ~~~vyld~~a~g~-~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
+-+.|++|...|. ..+.|.+++.+++..+..+.+. +...........++++.+++++|.+ ..++|+ +|+++ ..
T Consensus 46 ~~~~~~sn~ylgl~~~p~v~~a~~~~~~~~~~~~~~--s~~~~~~~~~~~~le~~la~~~g~~--~~~~~~-SG~~A-n~ 119 (406)
T PRK13393 46 EVTVWCSNDYLGMGQHPAVLAAMHEALDTCGAGAGG--TRNISGTNHYHVLLEAELADLHGKE--AALLFT-SGYVS-NW 119 (406)
T ss_pred cEEEeecccccCCCCCHHHHHHHHHHHHHcCCCCcc--cccccCChHHHHHHHHHHHHHhCCC--cEEEeC-CcHHH-HH
Confidence 3466777777787 4677999999988764222221 2222223456788999999999973 245555 88875 44
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
.++..+.. ..+|+ +|++...+|.++..+++..|++++.++.+ |++++++.++... .+++
T Consensus 120 ~ai~~l~~-------------~~~g~--~I~~~~~~H~s~~~~~~~~g~~~~~~~~~-----d~~~l~~~l~~~~-~~~~ 178 (406)
T PRK13393 120 AALSTLGS-------------RLPGC--VILSDELNHASMIEGIRHSRAEKRIFRHN-----DPADLERKLSDLD-PHRP 178 (406)
T ss_pred HHHHHhhc-------------CCCCC--EEEEccchhHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHhcc-CCCC
Confidence 44443320 12566 78888899999999999899988877643 7888888776321 1367
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc-cc--cCCC-C-CCCCccEEEEcCCCCCCCCCCcEEE
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV-EI--DVRS-G-QTDGYDAIFLSTHKFLGGPGSPGIL 309 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~-~i--d~~~-~-~~~~~D~v~~S~hK~lggp~g~G~L 309 (609)
++|++++++|++|.+.|+++|.++|++||+++++|++|+.|.. +. .+.. . ....+|+++.++.|.+|+++ |++
T Consensus 179 ~~v~~~~v~~~~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~g~~G--G~~ 256 (406)
T PRK13393 179 KLVAFESVYSMDGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAFGVMG--GYI 256 (406)
T ss_pred EEEEEcCCCCCCCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhhcccC--cee
Confidence 8999999999999999999999999999999999999985542 11 0100 0 01236888889999999654 788
Q ss_pred EEechhhccCCCCCCccCCCceEeecccccccccccccccccccC-CChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG-GTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYI 388 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~-gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (609)
+.++++ ++.+..... ...+.. +.|.....+.+++++. +..+ ..+++.+++.
T Consensus 257 ~~~~~~--~~~l~~~~~----------------------~~~~t~~~~p~~~aa~~aaL~~~--~~~~--~~~~~~~~~~ 308 (406)
T PRK13393 257 TGSAAL--CDFIRSFAS----------------------GFIFTTSLPPAVAAGALASVRHL--KASS--AERERHQDRV 308 (406)
T ss_pred eCCHHH--HHHHHHhCc----------------------CceecCccCHHHHHHHHHHHHHH--hhCH--HHHHHHHHHH
Confidence 877776 222211100 000111 2222233344555543 2222 2234556778
Q ss_pred HHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh
Q 038499 389 ERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG 468 (609)
Q Consensus 389 ~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~ 468 (609)
+++.+.|+++ ++.++.+ ..+++.+.+.. . .....+.+.|.+++||.++++.....|.
T Consensus 309 ~~l~~~L~~~-g~~~~~~----~~~i~~v~~~~-~----------------~~~~~l~~~L~~~~Gi~v~~~~~p~~p~- 365 (406)
T PRK13393 309 ARLRARLDKA-GIPHLPN----PSHIVPVMVGD-P----------------VLCKQISDELLDRYGIYVQPINYPTVPR- 365 (406)
T ss_pred HHHHHHHHHc-CCCcCCC----CCCeEEEEeCC-H----------------HHHHHHHHHHHHhCCEEEEeECCCCCCC-
Confidence 8888888775 5555432 34555554322 1 1346788888776799998643212110
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
..+.+||+++.++|++|+++++++|++++...
T Consensus 366 -------------------------g~~~iRis~~~~~t~edid~l~~~l~~~~~~~ 397 (406)
T PRK13393 366 -------------------------GTERLRITPSPLHTDADIEHLVQALSEIWARL 397 (406)
T ss_pred -------------------------CCceEEEEECCCCCHHHHHHHHHHHHHHHHhc
Confidence 13689999999999999999999999987653
|
|
| >PRK15481 transcriptional regulatory protein PtsJ; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.9e-23 Score=221.39 Aligned_cols=295 Identities=17% Similarity=0.089 Sum_probs=204.9
Q ss_pred HHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 123 VHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 123 ~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
..++|+.++++++. .++++|++| +|++++|..++.++ +++|| .|++..+.|+.+...++.
T Consensus 123 ~~~lr~~ia~~~~~~~~~~~~Iiit-~G~~~al~~~~~~l---------------~~pgd--~Vlv~~P~y~~~~~~~~~ 184 (431)
T PRK15481 123 SPELHAWAARWLRDDCPVAFEIDLT-SGAIDAIERLLCAH---------------LLPGD--SVAVEDPCFLSSINMLRY 184 (431)
T ss_pred CHHHHHHHHHHHhhccCCcCeEEEe-cCcHHHHHHHHHHh---------------CCCCC--EEEEeCCCcHHHHHHHHH
Confidence 34577777777763 333478888 89999999998887 37899 699999999999999999
Q ss_pred cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEe-cccCccccccCHH---HHHHHHHHh-CCeEEEeccccCC
Q 038499 201 SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFS-ACSNVTGIYSDTR---SIARLLHQY-GGFACFDFAASGP 275 (609)
Q Consensus 201 ~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s-~~sn~TG~~~dl~---~I~~la~~~-g~~vivD~A~~~~ 275 (609)
.|++++.|+++++| +|+++|+++++ .++++++++ +++||||.+.+.+ +|.++|++| ++++|+|++++.-
T Consensus 185 ~g~~~~~v~~~~~g-~~~~~l~~~~~-----~~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~ 258 (431)
T PRK15481 185 AGFSASPVSVDAEG-MQPEKLERALA-----QGARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALL 258 (431)
T ss_pred cCCeEEeeccCCCC-CCHHHHHHHHh-----cCCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhh
Confidence 99999999997665 89999999997 468877776 9999999999976 899999999 9999999986532
Q ss_pred cc-c-ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 276 YV-E-IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 276 ~~-~-id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
.. + ...-+. .....+++.|++|.+| | ..+|+++.++++ ++.+.... ...
T Consensus 259 ~~~~~~~~~~~-~~~~vi~~~SfSK~~~-~GlRiG~~i~~~~~--~~~~~~~~------------------------~~~ 310 (431)
T PRK15481 259 SSSPYHSVIPQ-TTQRWALIRSVSKALG-PDLRLAFVASDSAT--SARLRLRL------------------------NSG 310 (431)
T ss_pred ccCCCCCCCcC-CCCCEEEEeeeccccC-CCceeEEEeCCHHH--HHHHHHHH------------------------hcc
Confidence 10 0 111111 1123578889999999 6 459999998877 22321100 000
Q ss_pred cCCChhHHHHHHHHHHHHHHHhc---CHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 353 SGGTPQVIQMIRAALAFWVKEYI---GHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 353 ~~gtp~i~~~~~aal~~~~~~~~---g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
..+.+.+.+. ++.. ++.+.. ..+.+++..++.++++.+.|++. ++.+..+ ..+++.|.-.+ .
T Consensus 311 ~~~~s~~~q~--a~~~-~l~~~~~~~~l~~~~~~~~~~r~~~~~~L~~~-~~~~~~p----~gg~f~~~~l~-~------ 375 (431)
T PRK15481 311 TQWVSHLLQD--LVYA-CLTDPEYQARLAQARLFYAQRRQKLARALQQY-GIAIPSP----GDGLNLWLPLD-T------ 375 (431)
T ss_pred ccCCCHHHHH--HHHH-HHhCccHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccC----CCeEEEEEECC-C------
Confidence 0112223322 1222 222211 13456677777788888888876 6654333 34566665554 1
Q ss_pred CCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHH
Q 038499 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNE 509 (609)
Q Consensus 430 ~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~e 509 (609)
+...+++.|.+ .||.+++|..|..+ . ..+++||+++. .+++
T Consensus 376 -----------~~~~~~~~l~~-~gV~v~pg~~f~~~-~-------------------------~~~~iRis~~~-~~~~ 416 (431)
T PRK15481 376 -----------DSQATALTLAK-SGWLVREGEAFGVS-A-------------------------PSHGLRITLST-LNDA 416 (431)
T ss_pred -----------CHHHHHHHHHH-CCcEEecCCccccC-C-------------------------CCCeEEEEcCC-CChH
Confidence 35678888865 69999998876421 0 13689999975 4689
Q ss_pred HHHHHHHHHHHHHH
Q 038499 510 EFEFTLEALEFIAI 523 (609)
Q Consensus 510 eid~ll~al~~v~~ 523 (609)
+++.+++.|.+++.
T Consensus 417 ~i~~~~~~l~~~~~ 430 (431)
T PRK15481 417 EINRLAADLHQALN 430 (431)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999988764
|
|
| >PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-22 Score=211.20 Aligned_cols=336 Identities=14% Similarity=0.063 Sum_probs=219.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
...++++.+++++|++ .+++++ |+++++..++.+++ +++|| +|++++++|.++...+...
T Consensus 34 ~~~~le~~la~~~g~~---~~v~~~-sgt~al~lal~al~--------------~~~Gd--~Viv~~~~~~~~~~~~~~~ 93 (379)
T PRK11658 34 KNQALEQAFCQLTGNQ---HAIAVS-SATAGMHITLMALG--------------IGPGD--EVITPSLTWVSTLNMIVLL 93 (379)
T ss_pred hHHHHHHHHHHHhCCC---eEEEEC-CHHHHHHHHHHHcC--------------CCCCC--EEEECCCcHHHHHHHHHHc
Confidence 3688999999999985 456664 45568888888775 47898 7999999999999888899
Q ss_pred CceEEEEecCCC-CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc
Q 038499 202 LAEVVEIGLDDD-GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID 280 (609)
Q Consensus 202 G~~vv~v~~~~~-g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id 280 (609)
|++++.++++.+ +.+|+++++++++ +++++++ +.|++|...|+++|.++|++||+++++|+|++.+....+
T Consensus 94 G~~~v~vd~~~~~~~~d~~~l~~~i~-----~~tkav~---~~~~~G~~~d~~~i~~~a~~~gi~vi~D~a~a~g~~~~~ 165 (379)
T PRK11658 94 GATPVMVDVDRDTLMVTPEAIEAAIT-----PRTKAII---PVHYAGAPADLDAIRAIGERYGIPVIEDAAHAVGTYYKG 165 (379)
T ss_pred CCEEEEEecCCCcCCcCHHHHHHhcc-----cCCeEEE---EeCCCCCcCCHHHHHHHHHHcCCeEEEECCCccCCeECC
Confidence 999999999864 5689999999998 6788876 455799999999999999999999999999998765432
Q ss_pred CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhH
Q 038499 281 VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV 359 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i 359 (609)
.. ....+.++++++.+|.+.++.| |+++.+ +++ ..++++....|........+....... ....+.|+..-
T Consensus 166 ~~-~g~~g~~~~Sf~~~K~l~~g~G-G~v~~~~~~~--~~~~~~~~~~G~~~~~~~~~~~~~~~~----~~~~~~G~n~~ 237 (379)
T PRK11658 166 RH-IGARGTAIFSFHAIKNITCAEG-GLVVTDDDEL--ADRLRSLKFHGLGVDAFDRQTQGRAPQ----AEVLTPGYKYN 237 (379)
T ss_pred ee-cCCCCCEEEeCCCCCcCcccCc-eEEEECCHHH--HHHHHHHHHcCCCcchhhhhcccCCCc----ceeeccccccC
Confidence 11 1123567888889999977654 777765 454 233433332332211100000000000 01223444221
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcc--eEEEEeccCCCCCcCCCCCCCCCC
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA--ILSFNIHSSTINSSLGENTKTETD 437 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~--~~~f~~~~~~~~~~~~~~~~~~~~ 437 (609)
+.-+.|++.+. +..+.+.+.++.+++++++.+.|++++...+..+....+.. .+.+.+.. . .
T Consensus 238 ~~~l~AAl~~~--ql~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~ 301 (379)
T PRK11658 238 LADINAAIALV--QLAKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDE-E-------------R 301 (379)
T ss_pred cCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECC-c-------------c
Confidence 22334554444 33468888999999999999999988654343332111112 22333322 1 0
Q ss_pred CCCChHHHHHHHhhhcCcEeccCcccCChhhhhh-----cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHH
Q 038499 438 KPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL-----LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512 (609)
Q Consensus 438 ~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l-----l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid 512 (609)
..++.+++.+.|.+ .||.++..+ .+.+.+.. ...+.+.++++ ....+.+.++..+|++|++
T Consensus 302 ~~~~r~~~~~~L~~-~gI~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~-----------~~~~l~lP~~~~l~~~~~~ 367 (379)
T PRK11658 302 CGISRDALMEALKE-RGIGTGLHF--RAAHTQKYYRERFPTLSLPNTEWN-----------SERICSLPLFPDMTDADVD 367 (379)
T ss_pred ccCCHHHHHHHHHH-CCCCCcccC--cCcccChhhhccCCCCCChHHHHH-----------HhCeEEccCCCCCCHHHHH
Confidence 12467889999965 699876443 21111110 01122233333 2478999999999999999
Q ss_pred HHHHHHHHHHH
Q 038499 513 FTLEALEFIAI 523 (609)
Q Consensus 513 ~ll~al~~v~~ 523 (609)
+++++|+++..
T Consensus 368 ~i~~~i~~~~~ 378 (379)
T PRK11658 368 RVITALQQIAG 378 (379)
T ss_pred HHHHHHHHHHh
Confidence 99999998753
|
|
| >PRK09064 5-aminolevulinate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-22 Score=214.43 Aligned_cols=335 Identities=16% Similarity=0.126 Sum_probs=217.8
Q ss_pred CCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 84 TASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 84 ~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
-+.++ ++.|.+++.+.+..+..+.+ .+...+.......++++.+++++|.+ . .++|+ +|++++...+..+..
T Consensus 57 lgl~~-~p~v~~a~~~~~~~~~~~~~--~s~~~~g~~~~~~~l~~~la~~~g~~-~-~~~~~-sG~~an~~ai~~l~~-- 128 (407)
T PRK09064 57 LGMGQ-HPKVIEAMIEALDRCGAGAG--GTRNISGTNHYHVELERELADLHGKE-A-ALVFT-SGYVSNDATLSTLAK-- 128 (407)
T ss_pred cCCCC-CHHHHHHHHHHHHHcCCCCC--CcCcCccCHHHHHHHHHHHHHHhCCC-c-EEEEC-cHHHHHHHHHHHHhC--
Confidence 33344 45688999887765422111 12222234667889999999999953 2 56665 888764443322221
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEeccc
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACS 243 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~s 243 (609)
..+++ +|+...+.|.+....++..++++..++. .|+++|++.++.. ..+++++|++++++
T Consensus 129 ------------~~~~~--~i~~~~~~h~s~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~-~~~~~~~v~~~~v~ 188 (407)
T PRK09064 129 ------------LIPDC--VIFSDELNHASMIEGIRRSRCEKHIFRH-----NDVAHLEELLAAA-DPDRPKLIAFESVY 188 (407)
T ss_pred ------------CCCCC--EEEEeCcchHHHHHHHHHcCCcEEEECC-----CCHHHHHHHHHhc-cCCCCeEEEEeCCC
Confidence 23555 6777888888888888888888876664 3788898888632 11468899999999
Q ss_pred CccccccCHHHHHHHHHHhCCeEEEeccccCCcc-cc--cCCC-CC-CCCccEEEEcCCCCCCCCCCcEEEEEechhhcc
Q 038499 244 NVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV-EI--DVRS-GQ-TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQL 318 (609)
Q Consensus 244 n~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~-~i--d~~~-~~-~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l 318 (609)
|++|.+.|+++|.++|++||+++++|+||+.|.. +. .+.. .. ...+|+++.+++|.+|.+ | |+++.++++ +
T Consensus 189 s~~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~g~~-G-G~~~~~~~~--~ 264 (407)
T PRK09064 189 SMDGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAFGVM-G-GYIAGSAAL--V 264 (407)
T ss_pred CCCccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhhhcc-C-ceEecCHHH--H
Confidence 9999999999999999999999999999985421 10 1100 00 124689999999999854 3 888888876 2
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChh-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ-VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~-i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
+.+..... ...+..+.++ ....+.+++++. +.. +..+++.+++++++.+.|++
T Consensus 265 ~~l~~~~~----------------------~~~~t~~~~~~~~~aa~~al~~~--~~~--~~~~~~~~~~~~~l~~~L~~ 318 (407)
T PRK09064 265 DAVRSYAP----------------------GFIFTTSLPPAIAAAALASIRHL--KES--NEERERHQERAAKLKAALDA 318 (407)
T ss_pred HHHHHhCc----------------------cccccCcCCHHHHHHHHHHHHHH--hcC--HHHHHHHHHHHHHHHHHHHH
Confidence 22211100 0001122232 222233444443 222 34457788889999999987
Q ss_pred CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChh
Q 038499 398 NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEA 477 (609)
Q Consensus 398 ~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~ 477 (609)
+ +++++.+ ..+++.+.+.. . .....+.+.|.++.||.+++......|.
T Consensus 319 ~-g~~~~~~----~~~iv~i~~~~-~----------------~~~~~l~~~L~~~~gi~v~~~~~p~~~~---------- 366 (407)
T PRK09064 319 A-GIPVMPN----ESHIVPVMVGD-P----------------EKCKKASDMLLEEHGIYVQPINYPTVPR---------- 366 (407)
T ss_pred c-CCCCCCC----CCCEEEEEeCC-H----------------HHHHHHHHHHHHhCCEEEeeECCCCCCC----------
Confidence 6 6766543 24555554432 1 1356788888666799998532111110
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 478 QSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..+++||+++.++|++|+++++++|++++.+
T Consensus 367 ----------------~~~~lRis~~~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 367 ----------------GTERLRITPTPFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred ----------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999999999999999999999998765
|
|
| >COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.9e-22 Score=200.87 Aligned_cols=333 Identities=16% Similarity=0.120 Sum_probs=242.8
Q ss_pred CChHHHHHHHHHhhcCC-ccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccch
Q 038499 88 RSLRYIENYIINNVLPF-YGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE-DAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~-~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
+.|+.|.+++.+.+..- ||.| ....++...+.++.++.++.... +.|+|+ .|..-+|..+++.+.
T Consensus 38 ~~pp~i~~Al~~rvdhGvfGY~--------~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~-p~VVpgi~~~I~~~T---- 104 (388)
T COG1168 38 PTPPEIIEALRERVDHGVFGYP--------YGSDELYAAIAHWFKQRHQWEIKPEWIVFV-PGVVPGISLAIRALT---- 104 (388)
T ss_pred CCCHHHHHHHHHHHhcCCCCCC--------CCCHHHHHHHHHHHHHhcCCCCCcceEEEc-CcchHhHHHHHHHhC----
Confidence 67889999999887642 3333 33456788899999999886532 267887 677778999999885
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CC--CCCHHHHHHHHhhhccCCCceEEEEecc
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DG--LLDIEALRSKLELYKDAKRPILGSFSAC 242 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g--~ld~e~L~~al~~~~~~~~~~lv~~s~~ 242 (609)
++||. |++..+.|+.........|.+++..|+-. ++ .+|.++|++++.. ++++++++|+|
T Consensus 105 -----------~~gd~--Vvi~tPvY~PF~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~----~~vkl~iLCnP 167 (388)
T COG1168 105 -----------KPGDG--VVIQTPVYPPFYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVD----ERVKLFILCNP 167 (388)
T ss_pred -----------cCCCe--eEecCCCchHHHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhc----CCccEEEEeCC
Confidence 89994 77777788888888888999999999863 44 6799999999985 67899999999
Q ss_pred cCccccccC---HHHHHHHHHHhCCeEEEeccccC----CcccccCCCCCCC--CccEEEEcCCCCCCCCC-CcEEEEEe
Q 038499 243 SNVTGIYSD---TRSIARLLHQYGGFACFDFAASG----PYVEIDVRSGQTD--GYDAIFLSTHKFLGGPG-SPGILLMT 312 (609)
Q Consensus 243 sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~----~~~~id~~~~~~~--~~D~v~~S~hK~lggp~-g~G~L~~~ 312 (609)
+||||.+.. +.+|+++|.+||+.+|.|+.|+- |+..+.+..+... ..-+.+.|++|.|.-++ .++.+++.
T Consensus 168 HNP~Grvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL~~a~~Ii~ 247 (388)
T COG1168 168 HNPTGRVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGLKCAYIIIS 247 (388)
T ss_pred CCCCCccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhhhheeEEec
Confidence 999999955 67789999999999999999873 3333443333222 33567778999997553 37777777
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERAL 392 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~ 392 (609)
++..+ .+ |+... .+...+.++.+++++.-.++. +.....+.+.++.+.+++++.
T Consensus 248 n~~lr-~~-----------------------~~~~l-~~~~~~~~n~lg~~A~~aAY~-~G~~WLd~L~~yl~~N~~~~~ 301 (388)
T COG1168 248 NRELR-AK-----------------------FLKRL-KRNGLHGPSALGIIATEAAYN-QGEPWLDELLEYLKDNRDYVA 301 (388)
T ss_pred CHHHH-HH-----------------------HHHHH-HHhcCCCCchHHHHHHHHHHH-hchHHHHHHHHHHHHHHHHHH
Confidence 66521 11 11111 122345677777765544443 233456888999999999999
Q ss_pred HHhCC-CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh
Q 038499 393 ERLLP-NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL 471 (609)
Q Consensus 393 ~~L~~-~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l 471 (609)
+.+.+ +|++++..++ ...+.++-|.-.+ ++.+.+.+.|+++.+|.+..|..|+..
T Consensus 302 ~~l~~~~P~v~v~~p~-gTYL~WLD~r~l~------------------l~d~~l~~~ll~~akVal~~G~~FG~~----- 357 (388)
T COG1168 302 DFLNKHLPGVKVTEPQ-GTYLAWLDCRELG------------------LDDSELAEFLLEEAKVALSPGSTFGEE----- 357 (388)
T ss_pred HHHHhhCCCcEEecCC-CceeeeeeccccC------------------CChHHHHHHHHHhhcEeccCCCccCcC-----
Confidence 99975 7999999874 2333333333333 677899999999999999999876621
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..|++|++++ ++.+-++..++.|+..+..
T Consensus 358 ----------------------g~gf~RlN~a--cpr~~L~eal~ri~~al~~ 386 (388)
T COG1168 358 ----------------------GSGFVRLNFA--CPRAILEEALERLKRALKK 386 (388)
T ss_pred ----------------------CCceEEEecC--CCHHHHHHHHHHHHHHHhc
Confidence 2599999998 6888888888888866543
|
|
| >PTZ00377 alanine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-22 Score=218.35 Aligned_cols=352 Identities=14% Similarity=0.022 Sum_probs=216.6
Q ss_pred cCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC------CCCCCcEEEeCChHHHHHHH
Q 038499 82 DHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG------GGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 82 d~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g------~~~~~~vift~sGttaal~~ 155 (609)
|.++....|..+.+++.+.+..... ....|.. .....++|+.|+++++ .+++ +|++| +|+++++..
T Consensus 82 ~~~~~~~~P~~~~~~~~~~~~~~~~--~~~~Y~~----~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it-~Ga~~al~~ 153 (481)
T PTZ00377 82 DPSVSSLFPADVVARAKEYLNAIGG--GTGAYTD----SAGYPFVRKAVAAFIERRDGVPKDPS-DIFLT-DGASSGIKL 153 (481)
T ss_pred CccccccCCHHHHHHHHHHHHhCCC--cccCcCc----ccCCHHHHHHHHHHHHHhcCCCCChh-hEEEc-CCHHHHHHH
Confidence 4445555677788877655443211 1111222 2224456666666653 4454 89998 899999999
Q ss_pred HHHHhcccchhhHHHHHHhhh-cCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhcc-C
Q 038499 156 LQEVMGIAVPSILREKLIKCL-RDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKD-A 231 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l-~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~-~ 231 (609)
++.++ + ++|| .|+++.+.|+.+...++..|++++.+++++ ++.+|+++|+++++.... .
T Consensus 154 ~~~~l---------------~~~~gD--~Vlv~~P~y~~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~ 216 (481)
T PTZ00377 154 LLQLL---------------IGDPSD--GVMIPIPQYPLYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNG 216 (481)
T ss_pred HHHHh---------------ccCCCC--EEEECCCCchhHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcC
Confidence 98876 3 5888 799999999999999999999999999875 347999999999873111 1
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCC-c----ccccCC----CCCCC---C-ccEEEEc
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-Y----VEIDVR----SGQTD---G-YDAIFLS 295 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~-~----~~id~~----~~~~~---~-~D~v~~S 295 (609)
.+++++++++|+||||.+++ +++|+++|++||+++|+|+++..- + ....+. .+... + .-+++.|
T Consensus 217 ~~~k~l~l~~P~NPTG~~~s~e~~~~i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S 296 (481)
T PTZ00377 217 ITPRALVVINPGNPTGQVLTRDVMEEIIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHS 296 (481)
T ss_pred CCeeEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEec
Confidence 27898889999999999998 678999999999999999996531 1 001110 11000 0 1256679
Q ss_pred CCCCC-CCC-CCcEEEEE---echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHH
Q 038499 296 THKFL-GGP-GSPGILLM---TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFW 370 (609)
Q Consensus 296 ~hK~l-ggp-~g~G~L~~---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~ 370 (609)
++|.+ +-| ..+|++++ ++++ ++.+... . ....+++.+.+.+.+ . .
T Consensus 297 ~SK~~~~~~GlRiG~~~~~~~p~~l--i~~l~~~------------------------~-~~~~~~~~~~Q~a~~--~-~ 346 (481)
T PTZ00377 297 TSKGIIGECGRRGGYFELTNIPPEV--REQIYKL------------------------A-SINLCSNVVGQLMTG--L-M 346 (481)
T ss_pred CCcccccCCcCceEEEEEeCCCHHH--HHHHHHH------------------------h-heecCCChHHHHHHH--H-H
Confidence 99975 422 34899987 6666 2222111 0 001122233332211 1 1
Q ss_pred HHH---hc--------CHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCC
Q 038499 371 VKE---YI--------GHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP 439 (609)
Q Consensus 371 ~~~---~~--------g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
+.. .. ..+.+.++.++.++.+.+.|.+++++.+..+ ..+++.|.-..-+.... ....+..
T Consensus 347 l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~~p----~gg~fl~~~~~l~~~~~-----~~~~~~~ 417 (481)
T PTZ00377 347 CNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQPV----EGAMYAFPRIELPEKAI-----QEAKERG 417 (481)
T ss_pred hCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEeecC----CeeEEEEeeccCchhhH-----HHHHhcC
Confidence 110 00 1122233446677888899988888888755 34555553221000000 0000000
Q ss_pred C-ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 440 L-HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 440 l-~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
+ ...+++..+.++.||.+.+|..|.... .++++|||+. .++++++..++.|
T Consensus 418 ~~~~~~~~~~ll~~~gV~v~pG~~F~~~~--------------------------~~~~~Rls~~--~~~e~l~~~l~rl 469 (481)
T PTZ00377 418 LAPDVLYCLELLESTGIVVVPGSGFGQKP--------------------------GTYHFRITIL--PPEEQIEEMVKKI 469 (481)
T ss_pred CCcHHHHHHHHHHHcCEEEeCCcccCCCC--------------------------CCCEEEEEEC--CCHHHHHHHHHHH
Confidence 1 123444455566799999998775210 1479999998 6788999999999
Q ss_pred HHHHHhc
Q 038499 519 EFIAIYG 525 (609)
Q Consensus 519 ~~v~~~~ 525 (609)
+.+++..
T Consensus 470 ~~~~~~~ 476 (481)
T PTZ00377 470 KEFHESF 476 (481)
T ss_pred HHHHHHH
Confidence 9887653
|
|
| >PTZ00433 tyrosine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-22 Score=213.70 Aligned_cols=330 Identities=15% Similarity=0.047 Sum_probs=215.3
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC------------CCCCCcEEEeCChHHHHHHHH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG------------GGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g------------~~~~~~vift~sGttaal~~l 156 (609)
+++.+.+++.+.+.. .....|....+ ..++|+.|+++++ .+++ +|++| +|+++++..+
T Consensus 51 p~~~~~~a~~~~~~~----~~~~~Y~~~~G----~~~Lr~aia~~~~~~~~~~~~~~~~~~~~-~i~it-~G~~~al~~~ 120 (412)
T PTZ00433 51 TPAIQTKALVEAVDS----QECNGYPPTVG----SPEAREAVATYWRNSFVHKESLKSTIKKD-NVVLC-SGVSHAILMA 120 (412)
T ss_pred CCHHHHHHHHHHhhc----CCCCCCCCCCC----cHHHHHHHHHHHHhhccccccccCCCChh-hEEEe-CChHHHHHHH
Confidence 567788888776542 11111111111 3456666666664 4454 89998 8999999999
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCc
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~ 234 (609)
+..+ +++|| .|+++.+.|+.+...++..|++++.+++++ ++.+|+++|+++++ +++
T Consensus 121 ~~~~---------------~~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~-----~~~ 178 (412)
T PTZ00433 121 LTAL---------------CDEGD--NILVPAPGFPHYETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVD-----DRT 178 (412)
T ss_pred HHHh---------------cCCCC--EEEEccCCcccHHHHHHHcCCEEEEEecCccccCcCCHHHHHHHhc-----cCc
Confidence 8877 37888 699999999999888999999999999864 46799999999887 578
Q ss_pred eEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc---c-ccCCCCCCCCccEEEEcCCCCCCCCC-Cc
Q 038499 235 ILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---E-IDVRSGQTDGYDAIFLSTHKFLGGPG-SP 306 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~-id~~~~~~~~~D~v~~S~hK~lggp~-g~ 306 (609)
+++++++++||||.+.+ +++|+++|++||+++|+|+++..... . ..+..+.....-+++.|++|.+|.|+ .+
T Consensus 179 ~~i~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGlRl 258 (412)
T PTZ00433 179 KALIMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNLVVPGWRL 258 (412)
T ss_pred eEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhcCCCCeeE
Confidence 99999999999999877 56678999999999999999763211 1 11112111112366779999997664 59
Q ss_pred EEEEEe------chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHH-HhcCHHH
Q 038499 307 GILLMT------KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK-EYIGHEV 379 (609)
Q Consensus 307 G~L~~~------~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~-~~~g~~~ 379 (609)
|++++. +++ ++.+... .....+++.+.+.+ +..++.. .....+.
T Consensus 259 G~~i~~~p~~~~~~~--~~~~~~~-------------------------~~~~~~~~~~~q~a--~~~~l~~~~~~~~~~ 309 (412)
T PTZ00433 259 GWLLLVDPHGNGGDF--LDGMKRL-------------------------GMLVCGPCSVVQAA--LGEALLNTPQEHLEQ 309 (412)
T ss_pred EEEEEeCCcccHHHH--HHHHHHH-------------------------hhccCCCChHHHHH--HHHHHhcCcHHHHHH
Confidence 999972 223 1111000 00011233333322 2222211 0123456
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc
Q 038499 380 IKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG 459 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~ 459 (609)
++++.++.++.+.+.|+...++.+..+ ..+++.|...+ ... -....+..++++.|.+++||.+++
T Consensus 310 ~~~~~~~~r~~l~~~L~~~~~~~~~~p----~gg~f~~~~l~-~~~----------~~~~~~~~~~~~~ll~~~gV~v~p 374 (412)
T PTZ00433 310 IVAKLEEGAMVLYNHIGECIGLSPTMP----RGSMFLMSRLD-LEK----------FRDIKSDVEFYEKLLEEENVQVLP 374 (412)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCC----CeeEEEEEEec-hhh----------cCCCCCHHHHHHHHHHhcCEEEeC
Confidence 667777788888899987666665443 34555554333 100 000013567788877667999998
Q ss_pred CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 460 GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 460 G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
|..|. .++++||+++. .+++++..++.|..+++.-
T Consensus 375 g~~f~-----------------------------~~~~iRis~~~--~~e~l~~al~~l~~~~~~~ 409 (412)
T PTZ00433 375 GEIFH-----------------------------MPGFTRLTISR--PVEVLREAVERIKAFCERH 409 (412)
T ss_pred ccccC-----------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHHh
Confidence 87653 14799999984 5888999999998887643
|
|
| >PRK08068 transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=212.71 Aligned_cols=338 Identities=11% Similarity=0.059 Sum_probs=213.7
Q ss_pred ceEEecCCC-CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTA-SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a-~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal 153 (609)
+++.|+.+. ..+.++.+.+++.+.+... ....|....+..++++.+.+++.+..| .+++++|++| +|+++++
T Consensus 33 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it-~G~~~~l 107 (389)
T PRK08068 33 DVINLGQGNPDQPTPEHIVEALQEAAENP----ANHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAIL-FGGKAGL 107 (389)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhCC----CCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEc-CCcHHHH
Confidence 345555443 2334566777777765431 110111111223344444444433346 3443368887 7777788
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~ 231 (609)
..++..+ +++|| .|+++.+.|+.+...++..|++++.+++++ +..+|++++++++.
T Consensus 108 ~~~~~~~---------------~~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~----- 165 (389)
T PRK08068 108 VELPQCL---------------MNPGD--TILVPDPGYPDYLSGVALARAQFETMPLIAENNFLPDYTKIPEEVA----- 165 (389)
T ss_pred HHHHHHh---------------CCCCC--EEEEcCCCCcchHHHHHhcCCEEEEeecccccCCCCCHHHHHHhcc-----
Confidence 8877766 37888 699999999999888899999999999975 34689999999887
Q ss_pred CCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCC-c---ccccCCCC-CCCCccEEEEcCCCCCCCC
Q 038499 232 KRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGP-Y---VEIDVRSG-QTDGYDAIFLSTHKFLGGP 303 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~-~---~~id~~~~-~~~~~D~v~~S~hK~lggp 303 (609)
++++++++++|+||||.+.+. ++|+++|++|++++|+|+++..- + .+..+... ......+++.|++|.+|.|
T Consensus 166 ~~~~~v~l~~P~NPTG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~ 245 (389)
T PRK08068 166 EKAKLMYLNYPNNPTGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTFNMA 245 (389)
T ss_pred ccceEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhccCCc
Confidence 578999999999999999986 46788899999999999997421 1 11121111 0112357888999999755
Q ss_pred C-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHH
Q 038499 304 G-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKK 382 (609)
Q Consensus 304 ~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~ 382 (609)
+ .+|+++.++++ ++.+... ......+++...+. ++..++.......+.+++
T Consensus 246 GlRiG~~~~~~~l--~~~l~~~------------------------~~~~~~~~~~~~q~--~~~~~l~~~~~~~~~~~~ 297 (389)
T PRK08068 246 GWRVAFAVGNESV--IEAINLL------------------------QDHLFVSLFGAIQD--AAIEALLSDQSCVAELVA 297 (389)
T ss_pred cceeEeEecCHHH--HHHHHHH------------------------HhhccCCCChHHHH--HHHHHHhCcHHHHHHHHH
Confidence 3 59999998887 3332111 01111233333332 222222212223456677
Q ss_pred HHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcc
Q 038499 383 QEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCA 462 (609)
Q Consensus 383 ~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ 462 (609)
+.++.++++.+.|+.+ ++.+..+ ..+++.+...+ +. ++...+++.|.++.||.+++|..
T Consensus 298 ~~~~~r~~~~~~L~~~-g~~~~~~----~g~~~~~v~~~-~~---------------~~~~~~~~~l~~~~gi~v~pg~~ 356 (389)
T PRK08068 298 RYESRRNAFISACREI-GWEVDAP----KGSFFAWMPVP-KG---------------YTSEQFADLLLEKAHVAVAPGNG 356 (389)
T ss_pred HHHHHHHHHHHHHHHC-CCcccCC----CeeEEEEEECC-CC---------------CCHHHHHHHHHHhCCEEEecchH
Confidence 7777888888888876 6665533 34555444443 11 35778989987767999998865
Q ss_pred cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 463 CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 463 ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
+..+ .++++||+++ ..++.+...++.|+
T Consensus 357 f~~~---------------------------~~~~iRi~~~--~~~~~l~~al~~l~ 384 (389)
T PRK08068 357 FGEH---------------------------GEGYVRVGLL--TDEERLREAVERIG 384 (389)
T ss_pred hCcc---------------------------CCCeEEEEEc--CCHHHHHHHHHHHH
Confidence 5311 1479999997 35555555555544
|
|
| >PRK07366 succinyldiaminopimelate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.3e-22 Score=213.49 Aligned_cols=336 Identities=11% Similarity=0.011 Sum_probs=215.1
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----C--CCCCCcEEEeCChHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----G--GGQEDAMIFCGSGTT 150 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g--~~~~~~vift~sGtt 150 (609)
++.++.+... +.++.+.+++.+.+.. .....|....+ ..++|+.+++++ | ++++++|++| +|++
T Consensus 32 ~i~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G----~~~lr~aia~~~~~~~g~~~~~~~~I~it-~Gs~ 102 (388)
T PRK07366 32 LIDLSLGSSDLPAPAHALEAIAQSLHD----PSTHGYLLFHG----TLDFREAAAQWYEQRFGLAVDPETEVLPL-IGSQ 102 (388)
T ss_pred eEEeCCCCCCCCCCHHHHHHHHHHHhC----cccCCCCCCCC----CHHHHHHHHHHHHHhhCCcCCCcCeEEEC-CCcH
Confidence 4555544333 3366778887766532 11111111112 234555555554 5 4454257777 8999
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhh
Q 038499 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELY 228 (609)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~ 228 (609)
+++..++..+ +++|| .|++..+.|+.+...++..|++++.++++.+ ..+|++++++++.
T Consensus 103 ~al~~~~~~l---------------~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-- 163 (388)
T PRK07366 103 EGTAHLPLAV---------------LNPGD--FALLLDPGYPSHAGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVL-- 163 (388)
T ss_pred HHHHHHHHHh---------------CCCCC--EEEEcCCCCcchHHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhc--
Confidence 9999998876 37898 6999999999998889999999999999753 4678889988776
Q ss_pred ccCCCceEEEEecccCccccccCHH---HHHHHHHHhCCeEEEeccccCCc----c-cccCCCCCCC-CccEEEEcCCCC
Q 038499 229 KDAKRPILGSFSACSNVTGIYSDTR---SIARLLHQYGGFACFDFAASGPY----V-EIDVRSGQTD-GYDAIFLSTHKF 299 (609)
Q Consensus 229 ~~~~~~~lv~~s~~sn~TG~~~dl~---~I~~la~~~g~~vivD~A~~~~~----~-~id~~~~~~~-~~D~v~~S~hK~ 299 (609)
.+++++++++++||||.+.+.+ +|+++|++||+++|+|+++.--. . ...+...... ...+++.|++|.
T Consensus 164 ---~~~k~i~l~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~ 240 (388)
T PRK07366 164 ---AQARLMVLSYPHNPTTAIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKS 240 (388)
T ss_pred ---ccceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeecccc
Confidence 5789999999999999998854 57778999999999999965321 1 1112221111 123667899999
Q ss_pred CCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCCh-hHHHHHHHHHHHHHHHhcCH
Q 038499 300 LGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP-QVIQMIRAALAFWVKEYIGH 377 (609)
Q Consensus 300 lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp-~i~~~~~aal~~~~~~~~g~ 377 (609)
+|.| ..+|+++.++++ ++.+... ......+++ .+.+. +++.+.......
T Consensus 241 ~g~~GlRiG~~v~~~~l--i~~l~~~------------------------~~~~~~~~~~~~~~~---a~~~l~~~~~~l 291 (388)
T PRK07366 241 YNMGGFRIGFAIGNAQL--IQALRQV------------------------KAVVDFNQYRGILNG---AIAALTGPQATV 291 (388)
T ss_pred cCCcchhheehcCCHHH--HHHHHHH------------------------HhhcccCCCHHHHHH---HHHHHhCcHHHH
Confidence 9755 359999998887 3333111 000111221 22222 222222112235
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEe
Q 038499 378 EVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA 457 (609)
Q Consensus 378 ~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v 457 (609)
+.+++..++.++++.+.|+++ ++.+..+ ..+++.|.-.+ +. ...+..++++.|.++.||.+
T Consensus 292 ~~~~~~~~~~r~~l~~~L~~~-~~~~~~p----~~g~f~~~~~~-~~-------------~~~~~~~~~~~l~~~~gv~v 352 (388)
T PRK07366 292 QQTVQIFRQRRDAFINALHQI-GWPVPLP----EATMYVWAKLP-EP-------------WQGNSVEFCTQLVAQTGVAA 352 (388)
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCcccCC----CeeEEEEEECC-cc-------------cCCCHHHHHHHHHHhCCEEE
Confidence 566777777888888888876 5654333 34555555444 11 00135667776656679999
Q ss_pred ccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 458 RGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 458 ~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
++|..|... .++|+||+++ .++++++..++.|...
T Consensus 353 ~pg~~f~~~---------------------------~~~~iRi~~~--~~~~~l~~~l~rl~~~ 387 (388)
T PRK07366 353 SPGSGFGKS---------------------------GEGYVRFALV--HDPDILEEAVERIAAF 387 (388)
T ss_pred eCchHhCcC---------------------------CCCeEEEEec--CCHHHHHHHHHHHHHh
Confidence 988765311 1489999997 3688898888888754
|
|
| >PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-22 Score=220.67 Aligned_cols=339 Identities=14% Similarity=0.042 Sum_probs=216.9
Q ss_pred ceEEecCCCC----CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh------CCCCCCcEEEeC
Q 038499 77 RLTYADHTAS----GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL------GGGQEDAMIFCG 146 (609)
Q Consensus 77 ~~vyld~~a~----g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~------g~~~~~~vift~ 146 (609)
+++.|+.+.. -+.|+.+.+++.+.+..... |... ....++|+.|++++ +.+++ +|++|
T Consensus 147 ~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~~~~------Y~~~----~G~~~lReaia~~~~~~~~~~~~~~-~I~it- 214 (517)
T PRK13355 147 HILKLNIGNPAPFGFRTPDEVVYDMAQQLTDTEG------YSDS----KGLFSARKAIMQYAQLKGLPNVDVD-DIYTG- 214 (517)
T ss_pred CeEEecCcCCCcCCCCCCHHHHHHHHHHhhcCCC------CCCC----cChHHHHHHHHHHHHhcCCCCCChh-HEEEe-
Confidence 4667765332 24577788888776643211 1111 12456777777776 56665 89887
Q ss_pred ChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHH
Q 038499 147 SGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSK 224 (609)
Q Consensus 147 sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~a 224 (609)
+|++++|..++.++ +++|| .|+++.+.|+.+...++..|++++.+++++ ++.+|+++|+++
T Consensus 215 ~G~~eal~~~~~~l---------------~~~Gd--~Vli~~P~y~~y~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~ 277 (517)
T PRK13355 215 NGVSELINLSMSAL---------------LDDGD--EVLIPSPDYPLWTACVNLAGGTAVHYRCDEQSEWYPDIDDIRSK 277 (517)
T ss_pred CcHHHHHHHHHHHh---------------CCCCC--EEEEcCCCCcCHHHHHHHCCCEEEEeecCcccCCCCCHHHHHHh
Confidence 89999999988876 47899 699999999999988899999999998875 467999999999
Q ss_pred HhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEEcCC
Q 038499 225 LELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFLSTH 297 (609)
Q Consensus 225 l~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~S~h 297 (609)
++ ++++++++++|+||||.+.+ +++|+++|++||+++|+|+++.--. ....+..+..+..-+++.|++
T Consensus 278 ~~-----~~~k~i~i~nP~NPTG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~S 352 (517)
T PRK13355 278 IT-----SRTKAIVIINPNNPTGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLS 352 (517)
T ss_pred cC-----cCceEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecch
Confidence 97 68999999999999999998 7788999999999999999965211 111111111111223347899
Q ss_pred CCCCCCC-CcEEEEEe--chhhc--cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHH
Q 038499 298 KFLGGPG-SPGILLMT--KALYQ--LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWV 371 (609)
Q Consensus 298 K~lggp~-g~G~L~~~--~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~ 371 (609)
|.++.|+ .+|+++++ +++.. +..+.. ......+.+...+.+ .+++
T Consensus 353 K~~~~~G~RiG~~i~~~~~~~~~~~~~~l~~-------------------------~~~~~~~~~~~~q~a~~~aL---- 403 (517)
T PRK13355 353 KSHMIAGYRIGWMILSGNKRIAKDYIEGLNM-------------------------LANMRLCSNVPAQSIVQTAL---- 403 (517)
T ss_pred hhccCcccceEEEEeeCchhhHHHHHHHHHH-------------------------HhcCcCCcChHHHHHHHHHh----
Confidence 9986543 49999965 33200 000000 000001122222211 1221
Q ss_pred HHhcCH-HHH--HHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC-CCChHHHHH
Q 038499 372 KEYIGH-EVI--KKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK-PLHGPFVAT 447 (609)
Q Consensus 372 ~~~~g~-~~i--~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~-~l~~~~v~~ 447 (609)
...... +.+ ..+..+.++++.+.|.++|++++..+ ..+++.|.-.+ .. .. ..+..+++.
T Consensus 404 ~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~g~~~~~p----~g~fy~~~~l~-~~------------~~~~~~~~~~~~ 466 (517)
T PRK13355 404 GGHQSVKDYLVPGGRVYEQRELVYNALNAIPGISAVKP----KAAFYIFPKID-VK------------KFNIHDDEQFAL 466 (517)
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCCC----CeeeEEEeecC-cc------------cCCCCCHHHHHH
Confidence 111111 111 12334457888899988888887665 34555554333 10 00 012344554
Q ss_pred HHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 448 LLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 448 ~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.|+++.||.+++|..|..+ .++++||++. .++++++..++.|...++.
T Consensus 467 ~ll~~~gV~v~pg~~F~~~---------------------------~~~~~Ris~~--~~~~~l~~a~~rl~~~~~~ 514 (517)
T PRK13355 467 DLLHDKKVLIVQGTGFNWD---------------------------KPDHFRVVYL--PRLEDLEDAMDRLADFFSY 514 (517)
T ss_pred HHHHhCCEEEeCcchhCCC---------------------------CcCEEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 4445679999998766421 2589999995 6889999999999888764
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.4e-22 Score=225.58 Aligned_cols=350 Identities=17% Similarity=0.144 Sum_probs=227.8
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 116 GQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 116 ~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
..++.+.+.++++++++++|.+.. -+..++|+.+.+..++.+.... .+ -....|.+|+++..+|++|.
T Consensus 538 sQG~lq~i~elq~~l~eLtGmd~~--Sl~p~sGA~gE~A~Lmair~yh---------~~-~Ge~~r~~vLIp~saHgtNp 605 (954)
T PRK12566 538 AEGYRAMIDELEAWLCAITGFDAI--CMQPNSGAQGEYAGLLAIRRYH---------RS-RGQSQRDICLIPSSAHGTNP 605 (954)
T ss_pred hcCHHHHHHHHHHHHHHHHCCCeE--eecCCchHHHHHHHHHHHHHHH---------Hh-cCCCCCCEEEecccccccCH
Confidence 556788999999999999999743 3444466655333332211000 00 01122458999999999999
Q ss_pred HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 196 LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 196 ~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
.++...|++|+.|+.+++|.+|+++|+++++++ .+++.++.++++++..+...|+++|++++|++|+++++|+|+..+
T Consensus 606 asa~~~GieVv~Vp~D~~G~iDle~L~a~I~~~--~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a 683 (954)
T PRK12566 606 ASAQMAGMRVVIVECDPDGNVDLDDLKAKAAAA--GDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNA 683 (954)
T ss_pred HHHHHCCCEEEEeccCCCCCcCHHHHHHHhhcc--CCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhh
Confidence 889899999999999999999999999999732 256778888888888777788999999999999999999999876
Q ss_pred cccccC-CCCCCCCccEEEEcCCCCCCCCCCcEEEEEec-hhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEIDV-RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~id~-~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
...++. ..+ |+|++++++||||++|.|.|..++.. .. .+.+.|..+++..+... .. ..+ .
T Consensus 684 ~~~l~~Pg~~---GADi~~~s~HKtf~~P~G~GGP~vG~iav--~~~L~pfLp~~P~~d~~------G~------~~r-~ 745 (954)
T PRK12566 684 QVGLARPADI---GADVSHMNLHKTFCIPHGGGGPGMGPIGV--RAHLAPFVANHPVVPVE------GP------DPN-N 745 (954)
T ss_pred ccCCCChhhc---CCCEEEecCCcccCcCccCCCCccchhhh--hhhhhhhccCCCCcCCC------CC------CCC-C
Confidence 666652 444 89999999999999897767666655 33 22333444433211100 00 001 1
Q ss_pred CCCh----hHHHHHHHHHHHHHHHhcCHHHHHHHH--HHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCc
Q 038499 354 GGTP----QVIQMIRAALAFWVKEYIGHEVIKKQE--ETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 354 ~gtp----~i~~~~~aal~~~~~~~~g~~~i~~~~--~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
..+. +-..++.+++.|+ ...|.+..+... ..+++|+.++|.+..++.. .+.+.....-+.+...+ .
T Consensus 746 ga~S~~~~gsa~~l~~A~~Yi--~~lG~eLk~aa~~ailnAnYla~rL~~~~~v~~-~~~~~~~~hEfii~~~~--l--- 817 (954)
T PRK12566 746 GAVSAAPWGSASILPISWMYI--AMMGPQLADASEVAILSANYLANQLGGAFPVLY-RGRNERVAHECILDLRP--L--- 817 (954)
T ss_pred CceeecccchHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHhHhhCCCCc-CCCCCCeeeEEEEEccc--c---
Confidence 1121 1222234455554 556777334344 6688999999977433333 22111111112222221 0
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC
Q 038499 428 LGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS 507 (609)
Q Consensus 428 ~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t 507 (609)
......+..++.+.|.+ +||.+.. ..+ | .++.+||+.+.++|
T Consensus 818 -------~~~~g~~~~dvakRL~d-~Gihapt-~~f--P---------------------------v~~~LmIepTE~es 859 (954)
T PRK12566 818 -------KAQTGISEEDVAKRLMD-YGFHAPT-MSF--P---------------------------VPGTLMVEPTESES 859 (954)
T ss_pred -------ccccCCCHHHHHHHHHH-CCcEEeE-Eee--c---------------------------cCCEEEEEeeeeCC
Confidence 01122566889999985 7997642 111 1 15889999999999
Q ss_pred HHHHHHHHHHHHHHHHhcc--------------cccCCCcccccCCceeec
Q 038499 508 NEEFEFTLEALEFIAIYGQ--------------RFLPLYNFNIKTGTWCFM 544 (609)
Q Consensus 508 ~eeid~ll~al~~v~~~~~--------------~~~p~y~~~~~~~~w~~~ 544 (609)
++|+|+++++|+.+.++.+ +..|.-.-+... +|.|.
T Consensus 860 keEIDrf~eAL~~I~~e~~~v~~g~~~~~~n~l~~apht~~~~~~-~w~~~ 909 (954)
T PRK12566 860 KAELDRFVEAMLSIRAEIGKVQEGNWPAEDNPLKRAPHTLADVTG-VWQRP 909 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCcccCcccCCCCchHHhhc-cCCCC
Confidence 9999999999999987643 344555555444 78776
|
|
| >TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.7e-23 Score=218.13 Aligned_cols=302 Identities=15% Similarity=0.172 Sum_probs=203.3
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH--
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR-- 199 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-- 199 (609)
..+++++.+++++|++ +.+++ ++|++ ++..++.. +++|| +|++++..|.++...|.
T Consensus 48 ~~~~le~~la~l~g~~--~~l~~-~sG~~-al~~~l~l----------------l~~Gd--~Vl~~~~~y~~~~~~~~~~ 105 (378)
T TIGR01329 48 TRTALESLLAKLDKAD--RAFAF-SSGMA-ALDVITRL----------------LNNGD--EIIAGDDLYGGTDRLLTQV 105 (378)
T ss_pred HHHHHHHHHHHHhCCC--cEEEE-CCHHH-HHHHHHHH----------------hCCCC--EEEEcCCCchHHHHHHHHH
Confidence 3678999999999983 24555 47775 67766553 47898 69999999988776554
Q ss_pred --HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc
Q 038499 200 --QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277 (609)
Q Consensus 200 --~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~ 277 (609)
..|++++.++.+ |+++++++++ ++++++++++++||||.+.|+++|+++||+||+++++|++++.++.
T Consensus 106 ~~~~G~~v~~vd~~-----d~~~le~~i~-----~~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~ 175 (378)
T TIGR01329 106 VPRSGVVVVHVDTT-----DLDKVKAALG-----PKTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL 175 (378)
T ss_pred HHHcCcEEEEeCCC-----CHHHHHHhcC-----cCceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc
Confidence 469999999864 8999999997 6899999999999999999999999999999999999999887765
Q ss_pred cccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCC
Q 038499 278 EIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG 355 (609)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~g 355 (609)
...+. . ++|++++|+||+++||.+ .|+++++++.. .+++.+.... .|
T Consensus 176 ~~~l~-~---g~Di~v~S~tK~l~G~~~~~~G~v~~~~~~~-~~~~~~~~~~--------------------------~G 224 (378)
T TIGR01329 176 CNPLE-L---GADIVYHSATKFLAGHSDVMAGVLAVKGEEI-AKKVYFLQNS--------------------------TG 224 (378)
T ss_pred CChhh-c---CCcEEEEecceeccCCccceeEEEEeCcHHH-HHHHHHHHHh--------------------------cC
Confidence 44442 2 789999999999999876 79998866541 1222222110 11
Q ss_pred C-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce-EEeCCC-------------CCCCcceEEEEec
Q 038499 356 T-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI-KILGNT-------------STKRQAILSFNIH 420 (609)
Q Consensus 356 t-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i-~v~~~~-------------~~~r~~~~~f~~~ 420 (609)
. .+.. .+. +.+..........++..+++..+.+.|+++|.+ +++-|. ...+.++++|.+
T Consensus 225 ~~~~~~---~a~--l~~~~l~tl~~R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~- 298 (378)
T TIGR01329 225 SGLAPF---DCW--LLLRGIKTLAIRIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFET- 298 (378)
T ss_pred CcCCHH---HHH--HHHccCCCHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEE-
Confidence 1 1100 111 111112234455566666677777777776655 232221 123568999998
Q ss_pred cCCCCCcCCCCCCCCCCCCCC-hHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 421 SSTINSSLGENTKTETDKPLH-GPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~-~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
. + .. ...++..| +.++|.++.|..-+ .|.......+.++... ..|+.++
T Consensus 299 ~-~----------------~~~~~~~~~~L-~~~~i~~s~G~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~ 351 (378)
T TIGR01329 299 G-S----------------VALSKRLVEAT-KLFSITVSFGSVNSLISMPCFMSHASIPAEVRE---------ERGLPED 351 (378)
T ss_pred C-C----------------HHHHHHHHHhC-cCcccccCCCCCCceeeCCCccccccCCHHHHH---------hcCCCCC
Confidence 4 2 23 56888888 67899999886432 2322211222222111 2466789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 497 WTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.||||++. |+++.+++-|+..++
T Consensus 352 liR~svGl----E~~~dl~~dl~~al~ 374 (378)
T TIGR01329 352 LVRLSVGI----EDVDDLISDLDIAFV 374 (378)
T ss_pred eEEEEecc----CCHHHHHHHHHHHHH
Confidence 99999996 455556666555554
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK08064 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-23 Score=218.04 Aligned_cols=306 Identities=16% Similarity=0.170 Sum_probs=199.6
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH
Q 038499 118 HTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS 197 (609)
Q Consensus 118 ~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (609)
.......++++.++++.|++. .+++ ++|+. ++..++.. +++|| .|+++..+|+++...
T Consensus 51 ~~~p~~~~le~~lA~l~g~~~--~v~~-~sG~~-ai~~~l~~----------------l~~Gd--~Vlv~~~~y~~~~~~ 108 (390)
T PRK08064 51 SGNPTREALEDIIAELEGGTK--GFAF-ASGMA-AISTAFLL----------------LSKGD--HVLISEDVYGGTYRM 108 (390)
T ss_pred CCChhHHHHHHHHHHHhCCCC--eEEE-CCHHH-HHHHHHHH----------------hCCCC--EEEEccCccchHHHH
Confidence 334557789999999999873 5666 58876 56655542 47888 699999999877655
Q ss_pred H----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecccc
Q 038499 198 W----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 198 ~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~ 273 (609)
| +..|++++.++.+ |+++++++++ +++++|++++++||||.+.|+++|.++||++|+++++|++++
T Consensus 109 ~~~~~~~~G~~v~~v~~~-----d~~~l~~~l~-----~~tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~ 178 (390)
T PRK08064 109 ITEVLSRFGIEHTFVDMT-----NLEEVAQNIK-----PNTKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFL 178 (390)
T ss_pred HHHHHHHcCCEEEEECCC-----CHHHHHHhcC-----CCceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCC
Confidence 4 3479999999864 7899999997 689999999999999999999999999999999999999988
Q ss_pred CCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEec-hhhccCCCCCCccCCCceEeecccccccccccccccc
Q 038499 274 GPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE 350 (609)
Q Consensus 274 ~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (609)
.+.....+ .+ ++|+++.|+||+++|+.+ .|++++++ ++ .+.+.+...++
T Consensus 179 ~~~~~~~~-~~---g~Divv~S~tK~~~G~~~~laG~~v~~~~~~--~~~l~~~~~~~---------------------- 230 (390)
T PRK08064 179 TPLLQKPL-DL---GADVVLHSATKFLAGHSDVLAGLAVVKDEEL--AQKLYFLQNSF---------------------- 230 (390)
T ss_pred cccccCch-hh---CCcEEEeecceeccCCccceeEEEEeCCHHH--HHHHHHHHHhc----------------------
Confidence 76543333 22 789999999999999876 58888865 44 22332222111
Q ss_pred cccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce-EEeCCC-------------CCCCcceEE
Q 038499 351 RESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI-KILGNT-------------STKRQAILS 416 (609)
Q Consensus 351 r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i-~v~~~~-------------~~~r~~~~~ 416 (609)
|...... .+.+. +..........++..+.+..+.+.|+++|.+ +++-+. .....++++
T Consensus 231 ----g~~~~~~--~a~l~--~~gl~tl~~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s 302 (390)
T PRK08064 231 ----GAVLGVQ--DCWLV--LRGLKTLHVRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLS 302 (390)
T ss_pred ----CCCCCHH--HHHHH--HcccCcHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEE
Confidence 1110000 01111 0111123344455566677777777777655 233321 123566888
Q ss_pred EEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCc---EeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCC
Q 038499 417 FNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGI---QARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGY 490 (609)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI---~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~ 490 (609)
|.+.. .+.+.+.+ +..++ .++.|..++ .|.......+..+... .
T Consensus 303 f~~~~--------------------~~~~~~f~-~~l~l~~~~~s~G~~~sl~~~~~~~~h~~~~~~~~~---------~ 352 (390)
T PRK08064 303 FTLQS--------------------EEAVRQFV-SHVKLPVFAVSLGAVESILSYPAKMSHAAMPKEERD---------E 352 (390)
T ss_pred EEECC--------------------HHHHHHHH-HhCCcceEcccCCCCcceeECCcccccccCCHHHHH---------h
Confidence 88743 12344444 33455 777773222 0110000011111100 1
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 491 VGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 491 ~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.|+.++.||+|++.+++++.++.+.++|+.+
T Consensus 353 ~gi~~~liR~SvGle~~~dli~dl~~Al~~~ 383 (390)
T PRK08064 353 RGITDGLLRLSVGLENVDDLIADFEQALSYV 383 (390)
T ss_pred cCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence 2345799999999999999999999999874
|
|
| >PRK12414 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.1e-22 Score=211.96 Aligned_cols=340 Identities=10% Similarity=-0.026 Sum_probs=219.8
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaal~ 154 (609)
.+.|+.+... +.++.+.+++.+.+.. ... .|....+...+++.+++++++++|.+ ++++|++| +|+++++.
T Consensus 31 ~i~l~~g~p~~~~~~~~~~~~~~~~~~----~~~-~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~i~it-~g~~~al~ 104 (384)
T PRK12414 31 ALNLSQGAPNFAPDPALVEGVARAMRD----GHN-QYAPMAGIAALREALAEKTERLYGARYDPASEVTVI-ASASEGLY 104 (384)
T ss_pred eEEcCCCCCCCCCCHHHHHHHHHHHHh----CCC-CcCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEE-CChHHHHH
Confidence 4555544332 3466677777665532 111 12222234677788888888888875 33379998 78888898
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~ 233 (609)
.++..+ +.+|| .|+++.+.|..+...++..|++++.+++++ ++.+|+++|+++++ ++
T Consensus 105 ~~~~~l---------------~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-----~~ 162 (384)
T PRK12414 105 AAISAL---------------VHPGD--EVIYFEPSFDSYAPIVRLQGATPVAIKLSPEDFRVNWDEVAAAIT-----PR 162 (384)
T ss_pred HHHHHh---------------cCCCC--EEEEeCCCccchHHHHHHcCCEEEEEecCccccccCHHHHHhhcC-----cc
Confidence 888776 37898 689999999888888888999999999875 56799999999997 57
Q ss_pred ceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCC-CCCccEEEEcCCCCCCCC-C
Q 038499 234 PILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQ-TDGYDAIFLSTHKFLGGP-G 304 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~-~~~~D~v~~S~hK~lggp-~ 304 (609)
++++++++++||||.+.+ +++|+++|++||+++++|+++.... ....+.... ..+..+++.|++|.+|.| .
T Consensus 163 ~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGl 242 (384)
T PRK12414 163 TRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGW 242 (384)
T ss_pred cEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccccccCccc
Confidence 999999999999999865 6778899999999999999975311 111122111 112357888999999745 3
Q ss_pred CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 038499 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQE 384 (609)
Q Consensus 305 g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~ 384 (609)
.+|++++++++ ++.+.... .....+++.+.+.+ +.. ++.+......+++..
T Consensus 243 RiG~~v~~~~l--~~~l~~~~------------------------~~~~~~~s~~~q~a--~~~-~l~~~~~~~~~~~~~ 293 (384)
T PRK12414 243 RVGYCLAPAEL--MDEIRKVH------------------------QFMVFSADTPMQHA--FAE-ALAEPASYLGLGAFY 293 (384)
T ss_pred eEEEEecCHHH--HHHHHHHH------------------------hheecCCCcHHHHH--HHH-HhcCChHHHHHHHHH
Confidence 58999999887 33321110 00011222233321 112 222212233456667
Q ss_pred HHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 385 ETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 385 ~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
++.++.+.+.|+++ ++.+..+ ..+++.|...+ .. ......+++..+.++.||.+.+|..|.
T Consensus 294 ~~~r~~l~~~L~~~-g~~~~~~----~gg~~~~~~~~-~~-------------~~~~~~~~~~~~l~~~gV~v~pg~~f~ 354 (384)
T PRK12414 294 QRKRDLLARELAGS-RFELLPS----EGSFFMLARFR-HF-------------SDESDSDFVLRLIRDARVATIPLSAFY 354 (384)
T ss_pred HHHHHHHHHHHHhC-CCeecCC----CcceEEEEccc-cc-------------CCCCHHHHHHHHHHhCCEEEecchhhc
Confidence 77788888888876 6776544 34555553332 10 001244555444456799999987664
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
.+ + ...+++||+++. ++++++..++.|.+
T Consensus 355 ~~-~------------------------~~~~~iRis~~~--~~~~~~~~~~rl~~ 383 (384)
T PRK12414 355 TD-G------------------------TDTGLIRLSFSK--DDATLVEGARRLCS 383 (384)
T ss_pred CC-C------------------------CCCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 21 0 014799999984 67888887777753
|
|
| >PRK06348 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-22 Score=210.67 Aligned_cols=300 Identities=13% Similarity=0.080 Sum_probs=202.5
Q ss_pred HHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH
Q 038499 122 MVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR 199 (609)
Q Consensus 122 ~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (609)
+++.+.+++.+..| .+++ +|++| +|++.++..++.++ +++|| .|+++.+.|+.+...++
T Consensus 71 lr~~ia~~~~~~~~~~~~~~-~i~it-~G~~~al~~~~~~~---------------~~~gd--~vlv~~p~y~~~~~~~~ 131 (384)
T PRK06348 71 LIEEIIKYYSKNYDLSFKRN-EIMAT-VGACHGMYLALQSI---------------LDPGD--EVIIHEPYFTPYKDQIE 131 (384)
T ss_pred HHHHHHHHHHHHhCCCCChh-hEEEc-CChHHHHHHHHHHh---------------cCCCC--EEEEeCCCCcchHHHHH
Confidence 33444444433333 4565 89998 89999999998876 37888 69999999999998999
Q ss_pred HcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccC
Q 038499 200 QSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 200 ~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~ 274 (609)
..|++++.++..+ ++.+|+++|+++++ ++++++++++++||||.+.+ +++|.++|++||+++++|+++..
T Consensus 132 ~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~ 206 (384)
T PRK06348 132 MVGGKPIILETYEEDGFQINVKKLEALIT-----SKTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDG 206 (384)
T ss_pred HcCCEEEEecCCcCcCCcCCHHHHHHhhC-----cCccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEeccccc
Confidence 9999999998743 45699999999887 57899999999999999987 56788889999999999999764
Q ss_pred Ccc---cccCCCCC-CCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccc
Q 038499 275 PYV---EIDVRSGQ-TDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 275 ~~~---~id~~~~~-~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (609)
... ...+.... ..+..+++.|++|.+|.| ..+|++++++++ ++.+... .
T Consensus 207 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiG~~v~~~~~--~~~~~~~------------------------~ 260 (384)
T PRK06348 207 FSFYEDFVPMATLAGMPERTITFGSFSKDFAMTGWRIGYVIAPDYI--IETAKII------------------------N 260 (384)
T ss_pred ceeCCCccchhhcCCCcCcEEEEecchhccCCccccceeeecCHHH--HHHHHHH------------------------H
Confidence 321 11222221 023457778999999844 459999998877 2222111 0
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 350 ERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 350 ~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
.....+.+.+.+.+. ..++.......+.+++..++.++++.+.|+.++++++..+ ..+++.|.-.+ ..
T Consensus 261 ~~~~~~~~~~~q~~~--~~~l~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~~p----~gg~~~~~~~~-~~----- 328 (384)
T PRK06348 261 EGICFSAPTISQRAA--IYALKHRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLHPP----KGSIYAFINIK-KT----- 328 (384)
T ss_pred HhccCCCCHHHHHHH--HHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCCceeccC----CeeEEEEEecc-cC-----
Confidence 001112233333221 1222111112345566667777888889988877776644 34555554433 10
Q ss_pred CCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHH
Q 038499 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNE 509 (609)
Q Consensus 430 ~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~e 509 (609)
.++..++++.|.+++||.+.+|..|... .++++||+++ .+++
T Consensus 329 ---------~~~~~~l~~~l~~~~gv~v~pg~~f~~~---------------------------~~~~iRi~~~--~~~~ 370 (384)
T PRK06348 329 ---------GLSSVEFCEKLLKEAHVLVIPGKAFGES---------------------------GEGYIRLACT--VGIE 370 (384)
T ss_pred ---------CCCHHHHHHHHHHhCCEEEcCchhhccC---------------------------CCCeEEEEec--CCHH
Confidence 1356788888766689999988766411 1489999996 4788
Q ss_pred HHHHHHHHHHHH
Q 038499 510 EFEFTLEALEFI 521 (609)
Q Consensus 510 eid~ll~al~~v 521 (609)
+++..++.|+.+
T Consensus 371 ~l~~al~~l~~~ 382 (384)
T PRK06348 371 VLEEAFNRIEKM 382 (384)
T ss_pred HHHHHHHHHHhh
Confidence 888888877653
|
|
| >PRK07683 aminotransferase A; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.3e-21 Score=209.75 Aligned_cols=338 Identities=17% Similarity=0.092 Sum_probs=221.4
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----CC--CCCCcEEEeCChH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----GG--GQEDAMIFCGSGT 149 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g~--~~~~~vift~sGt 149 (609)
+.+.++.+... +.+..+.+++.+.+...+ . .|....+ ..++|+.+++++ |. +++.+|++| +|+
T Consensus 29 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~----~-~Y~~~~g----~~~lr~~ia~~l~~~~g~~~~~~~~I~~t-~G~ 98 (387)
T PRK07683 29 NLISLTIGQPDFPTPSHVKEAAKRAITENY----T-SYTHNAG----LLELRKAACNFVKDKYDLHYSPESEIIVT-IGA 98 (387)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCC----CHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CCh
Confidence 34555544322 345677788877665321 1 1111122 334555555554 43 343278888 788
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhh
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELY 228 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~ 228 (609)
+.++..++..+ +++|| .|+++.+.|+.+...++..|++++.++.+. +..+|.+++++.+.
T Consensus 99 ~~al~~~~~~l---------------~~~gd--~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~-- 159 (387)
T PRK07683 99 SEAIDIAFRTI---------------LEPGT--EVILPAPIYPGYEPIIRLCGAKPVFIDTRSTGFRLTAEALENAIT-- 159 (387)
T ss_pred HHHHHHHHHHh---------------CCCCC--EEEEcCCCccchHHHHHHcCCEEEEeecCcccCCCCHHHHHHhcC--
Confidence 88999888776 37888 699999999988888888999999999875 45678899999887
Q ss_pred ccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc---cccCCCC-CCCCccEEEEcCCCCCC
Q 038499 229 KDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---EIDVRSG-QTDGYDAIFLSTHKFLG 301 (609)
Q Consensus 229 ~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~id~~~~-~~~~~D~v~~S~hK~lg 301 (609)
++++++++++++||||.+.+ +++|+++|+++|+++|+|++++.... ...+... ...+..+++.|++|.+|
T Consensus 160 ---~~~~~i~i~~p~NPtG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~ 236 (387)
T PRK07683 160 ---EKTRCVVLPYPSNPTGVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQPHTSIAHFPEMREKTIVINGLSKSHS 236 (387)
T ss_pred ---cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCCCcCChhhccCCcCCeEEEeecccccc
Confidence 57899999999999999977 67789999999999999999764311 1122221 01133578889999998
Q ss_pred CCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc-CCChhHHHHHHHHHHHHHHHhcCHHH
Q 038499 302 GPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES-GGTPQVIQMIRAALAFWVKEYIGHEV 379 (609)
Q Consensus 302 gp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~-~gtp~i~~~~~aal~~~~~~~~g~~~ 379 (609)
.|+ .+|++++++++ ++.+... .... .+++.+.+ .++..++-......+.
T Consensus 237 ~pGlRiG~i~~~~~l--~~~~~~~-------------------------~~~~~~~~~~~~q--~~~~~~l~~~~~~~~~ 287 (387)
T PRK07683 237 MTGWRIGFLFAPSYL--AKHILKV-------------------------HQYNVTCASSISQ--YAALEALTAGKDDAKM 287 (387)
T ss_pred CccceeEEEEcCHHH--HHHHHHH-------------------------HHhccCCCChHHH--HHHHHHHhCChHHHHH
Confidence 553 59999999887 2332110 0011 12222322 2222232111122445
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc
Q 038499 380 IKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG 459 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~ 459 (609)
++++.++.++.+.+.|.+. ++.+..+ ..+++.+...+ .. .++..+++..|.+.+||.+++
T Consensus 288 ~~~~~~~~~~~~~~~l~~~-~~~~~~~----~~~~~~~~~~~-~~--------------~~~~~~~~~~ll~~~gI~v~p 347 (387)
T PRK07683 288 MRHQYKKRRDYVYNRLISM-GLDVEKP----TGAFYLFPSIG-HF--------------TMSSFDFALDLVEEAGLAVVP 347 (387)
T ss_pred HHHHHHHHHHHHHHHHHHc-CCcccCC----CeeEEEEEecc-cC--------------CCCHHHHHHHHHHhCCEEEcC
Confidence 5666777788888888776 6665543 34666665544 11 134566776655668999998
Q ss_pred CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 460 GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 460 G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
|..|... .++++||+++. +++++...++.|.++++.
T Consensus 348 g~~f~~~---------------------------~~~~~Ri~~~~--~~~~~~~al~~l~~~l~~ 383 (387)
T PRK07683 348 GSAFSEY---------------------------GEGYVRLSYAY--SIETLKEGLDRLEAFLQQ 383 (387)
T ss_pred chhhCCC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 8765411 25899999984 688899999998887654
|
|
| >TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-22 Score=212.28 Aligned_cols=322 Identities=16% Similarity=0.093 Sum_probs=218.2
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
.++.+.+++.+.+... +.... .+....+...+++++++++++++|.+ . .++++ +|+++++ .++..+
T Consensus 48 ~~~~~~~a~~~~~~~~-~~~~~-~~~~~~g~~~l~~~l~~~l~~~~g~~-~-~i~~~-sG~~a~~-~a~~~~-------- 113 (385)
T TIGR01825 48 DHPRLKEAAAQAIQQY-GVGAG-AVRTIAGTLRLHEELEEKLAKFKKTE-A-ALVFQ-SGFNTNQ-GVLSAL-------- 113 (385)
T ss_pred CCHHHHHHHHHHHHHc-CCCCC-ccCcccCCcHHHHHHHHHHHHHhCCC-c-EEEEC-cHHHHHH-HHHHHh--------
Confidence 5677778887776532 11111 11122234678899999999999964 2 57776 8887655 444443
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcccc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGI 248 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~ 248 (609)
+++|| +|++....|+++...+...|++++.++ .+|++++++.+.+.. .++++++++++++|+||.
T Consensus 114 -------~~~gd--~vi~~~~~~~~~~~~~~~~g~~~~~~~-----~~d~~~l~~~l~~~~-~~~~~~v~~~~v~~~tG~ 178 (385)
T TIGR01825 114 -------LRKGD--IVLSDELNHASIIDGLRLTKATKKIYK-----HADMDDLDRVLRENP-SYGKKLIVTDGVFSMDGD 178 (385)
T ss_pred -------CCCCC--EEEEEccccHHHHHHHHhcCCceEEeC-----CCCHHHHHHHHHhhc-cCCCeEEEEecCCcCCCC
Confidence 47888 788999999999888888888887664 478999998887421 136889999999999999
Q ss_pred ccCHHHHHHHHHHhCCeEEEeccccCCccc---------ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccC
Q 038499 249 YSDTRSIARLLHQYGGFACFDFAASGPYVE---------IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLG 319 (609)
Q Consensus 249 ~~dl~~I~~la~~~g~~vivD~A~~~~~~~---------id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~ 319 (609)
+.|+++|.++|++||+++|+|++++.+... +++. .+.|+++.|+||++|+++ |+++.++++ ++
T Consensus 179 ~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~----~~~~i~~~s~sK~~~~~g--G~~~~~~~~--~~ 250 (385)
T TIGR01825 179 VAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLE----DKVDIQVGTLSKAIGVVG--GYAAGHKEL--IE 250 (385)
T ss_pred ccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCC----cCCcEEEEeccHHhhcCC--CEEecCHHH--HH
Confidence 999999999999999999999998765332 1221 267899999999998544 888888776 33
Q ss_pred CCCCCccCCCceEeeccccccccccccccccccc---CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 320 SFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES---GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 320 ~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~---~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
.+.... ..+. .+.+.....+.+++.... . ...+.++..++++++.+.|+
T Consensus 251 ~~~~~~------------------------~~~~~~~~~~~~~~~a~~~al~~~~--~--~~~~~~~~~~~~~~l~~~L~ 302 (385)
T TIGR01825 251 YLKNRA------------------------RPFLFSTAQPPAVVAALAAAVDELQ--R--SPELMERLWDNTRFFKAGLG 302 (385)
T ss_pred HHHHhC------------------------ccccccCCCCHHHHHHHHHHHHHHh--c--CHHHHHHHHHHHHHHHHHHH
Confidence 321110 0000 112222223344444321 1 12456677778889999998
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
++ ++++..+ ..+++.+.... . .+..++++.|.++ ||.++++..+..+.
T Consensus 303 ~~-g~~~~~~----~~~~~~~~~~~-~----------------~~~~~~~~~L~~~-gi~v~~~~~~~~~~--------- 350 (385)
T TIGR01825 303 KL-GYDTGGS----ETPITPVVIGD-E----------------KAAQEFSRRLFDE-GIFAQSIVFPTVPR--------- 350 (385)
T ss_pred Hc-CCCCCCC----CCCEEEEEECC-H----------------HHHHHHHHHHHHC-CcEEcccCCCCCCC---------
Confidence 76 7776644 23455544432 1 1356788888776 99987543322111
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..+++|++++++++++|+++++++|+++++.
T Consensus 351 -----------------~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~~ 381 (385)
T TIGR01825 351 -----------------GTARIRNIPTAEHTKDDLDQALDAYEKVGKE 381 (385)
T ss_pred -----------------CCceEEEEEcCCCCHHHHHHHHHHHHHHHHH
Confidence 1368999999999999999999999998764
|
This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions. |
| >PRK01688 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.7e-23 Score=217.21 Aligned_cols=285 Identities=13% Similarity=0.052 Sum_probs=195.4
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccchHHHHHHcC
Q 038499 124 HEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHSNLLSWRQSL 202 (609)
Q Consensus 124 ~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G 202 (609)
.++++++++.+|.+++ +|+++ +|++++|..++..+ +++| + .|+++.++|+.+...++..|
T Consensus 60 ~~l~~~~a~~~g~~~~-~I~~~-~Gs~e~i~~~~~~~---------------~~~g~~--~vli~~P~y~~y~~~~~~~G 120 (351)
T PRK01688 60 KAVIENYAAYAGVKPE-QVLVS-RGADEGIELLIRAF---------------CEPGKD--AILYCPPTYGMYSVSAETIG 120 (351)
T ss_pred HHHHHHHHHHhCCCHH-HEEEc-CCHHHHHHHHHHHh---------------cCCCCC--EEEEcCCCHHHHHHHHHHcC
Confidence 5788999999999887 89997 89999999998876 3676 6 68999999998888888999
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHh--CCeEEEeccccCCccccc
Q 038499 203 AEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVEID 280 (609)
Q Consensus 203 ~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~vivD~A~~~~~~~id 280 (609)
++++.+++++++.+|++++++++. +++++++++|+||||.+.+.++|.++++.. ++++|+|+++.-......
T Consensus 121 ~~~~~v~~~~~~~~d~~~l~~~~~------~~~lv~l~nPnNPTG~~~~~~~l~~l~~~~~~~~~vivDEay~~f~~~~s 194 (351)
T PRK01688 121 VEIRTVPTLDNWQLDLPAIADNLD------GVKVVYVCSPNNPTGNLINPQDLRTLLELTRGKAIVVADEAYIEFCPQAS 194 (351)
T ss_pred CEEEEeecCCCCCCCHHHHHHhcc------CCcEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECchhhcCCCCC
Confidence 999999998888899999998774 689999999999999999988877776542 689999999643221111
Q ss_pred CCCC-CCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 281 VRSG-QTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 281 ~~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
+... ....--+++.|++|++|-| .++|++++++++ ++.+...... + ..+.
T Consensus 195 ~~~~~~~~~n~iv~rSfSK~~glaGlRiGy~i~~~~~--i~~l~~~~~~------------------------~--~v~~ 246 (351)
T PRK01688 195 LAGWLAEYPHLVILRTLSKAFALAGLRCGFTLANEEV--INLLLKVIAP------------------------Y--PLST 246 (351)
T ss_pred hHHHHhhCCCEEEEecchHhhcCHHHHHhHHhCCHHH--HHHHHhccCC------------------------C--CCCH
Confidence 1111 0112246778999999833 347999999887 3333211000 0 1111
Q ss_pred HHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEY--IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTET 436 (609)
Q Consensus 359 i~~~~~aal~~~~~~~--~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~ 436 (609)
+.+ .++.+++ .+. ...+...++..+.++++.+.|+.++++....+. . +++.+...+
T Consensus 247 ~~~--~~a~~~L-~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~ps---~-~nfi~~~~~--------------- 304 (351)
T PRK01688 247 PVA--DIAAQAL-SPQGIAAMRERVAEINANRQWLIAALKEIPCVEQVFDS---E-TNYILARFT--------------- 304 (351)
T ss_pred HHH--HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC---C-CcEEEEEcC---------------
Confidence 112 1222222 111 113334455566678899999888777533332 2 334333222
Q ss_pred CCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 038499 437 DKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLE 516 (609)
Q Consensus 437 ~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~ 516 (609)
+...+.+.|.+ .||.++.+..+. + .++++|||++ +.+|++++++
T Consensus 305 ----~~~~l~~~L~~-~gi~vr~~~~~~--------~--------------------~~~~iRis~~---~~~e~~~l~~ 348 (351)
T PRK01688 305 ----ASSAVFKSLWD-QGIILRDQNKQP--------G--------------------LSNCLRITIG---TREECQRVID 348 (351)
T ss_pred ----CHHHHHHHHHH-CCeEEEECCCcC--------C--------------------CCCeEEEeCC---CHHHHHHHHH
Confidence 35678888865 599999643221 1 1489999998 8899999999
Q ss_pred HHH
Q 038499 517 ALE 519 (609)
Q Consensus 517 al~ 519 (609)
+|+
T Consensus 349 al~ 351 (351)
T PRK01688 349 ALR 351 (351)
T ss_pred hhC
Confidence 874
|
|
| >PLN03226 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=210.90 Aligned_cols=356 Identities=17% Similarity=0.162 Sum_probs=225.1
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCC-CchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEE---eCChHHHHHHHHHHHhc
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTC-DSYVGQHTT-NMVHEASNYIKKCLGGGQEDAMIF---CGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~-~~~~~~~~~-~~~~e~r~~ia~~~g~~~~~~vif---t~sGttaal~~l~~~l~ 161 (609)
....+.|.+++...+...|+....+ .++.|.... ++...+++..++++++..+ .+++ ..||+.+++..+...
T Consensus 44 n~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~f~~~~~-~~~~nv~~~SG~~AN~av~~aL-- 120 (475)
T PLN03226 44 NFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEAFRLDPE-KWGVNVQPLSGSPANFAVYTAL-- 120 (475)
T ss_pred ccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHHhCCCcc-eeEEecCcCchHHHHHHHHHHh--
Confidence 3566778888888885555443222 233444333 3444466678888998876 5555 237888766555433
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCC------CccchHHHHHHcCceEE----EEecC-CCCCCCHHHHHHHHhhhcc
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPH------EHHSNLLSWRQSLAEVV----EIGLD-DDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~------~h~s~~~~~~~~G~~vv----~v~~~-~~g~ld~e~L~~al~~~~~ 230 (609)
++||| .|++.+. .|.+.....+..+..+. .+..+ ++|.+|+++|++++.+
T Consensus 121 --------------~~pgD--~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~d~Le~~l~~--- 181 (475)
T PLN03226 121 --------------LQPHD--RIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDYDKLEKKAML--- 181 (475)
T ss_pred --------------CCCCC--EEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCHHHHHHHHhh---
Confidence 47999 5887553 23222222222222222 33444 4689999999999975
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~ 310 (609)
.+++++++. . +.+|...|+++|.++|+++|+++++|+||++|....+..+...+++|++++++||||+||.| |+++
T Consensus 182 -~~pklIv~~-~-S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~G-g~I~ 257 (475)
T PLN03226 182 -FRPKLIIAG-A-SAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPRG-GMIF 257 (475)
T ss_pred -cCCeEEEEe-c-CcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCCc-eEEE
Confidence 467766552 3 35889999999999999999999999999999888776543345799999999999988998 8888
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (609)
++++. +....+. .+ +...+.... +... ...+ .|+|+...+...+.++......+.+.+.++..+++++
T Consensus 258 ~~~~~--~~~~~~g-~~-~~~d~~~~i---~~a~----~~~~-~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~ 325 (475)
T PLN03226 258 FRKGP--KPPKGQG-EG-AVYDYEDKI---NFAV----FPGL-QGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAA 325 (475)
T ss_pred Echhh--cccccCC-Cc-cHHHHHHHh---cccc----CCcc-CCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH
Confidence 88876 3222211 00 000010000 0000 0112 3455555544333333333456788899999999999
Q ss_pred HHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhh
Q 038499 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470 (609)
Q Consensus 391 ~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ 470 (609)
+.+.|.+. |++++++.... .++.+.+.+ . .++..++.+.| ++.||.+..+.-.. .
T Consensus 326 L~~~L~~~-G~~l~~~~t~~--hi~lv~~~~-~---------------gi~~~~~~~~L-~~~~I~~nk~~~p~----~- 380 (475)
T PLN03226 326 LANRLMSK-GYKLVTGGTDN--HLVLWDLRP-L---------------GLTGSRVEKVL-DLAHITLNKNAVPG----D- 380 (475)
T ss_pred HHHHHHhC-CCEEEcCCCCC--CEEEEEccC-C---------------CCCHHHHHHHH-HHCCCEECCCCCCC----C-
Confidence 99999884 99998753222 333333322 1 15677888888 45799988654211 0
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEe----cCCCCCHHHHHHHHHHHHHHHHh
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRIS----FPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls----~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.. ..++..||+. ...-++++|++++.+.|.+++..
T Consensus 381 ~~-------------------~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~~ 419 (475)
T PLN03226 381 SS-------------------ALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVTI 419 (475)
T ss_pred cc-------------------cCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence 00 0135667873 45667999999999999998875
|
|
| >PRK09265 aminotransferase AlaT; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-21 Score=211.33 Aligned_cols=341 Identities=16% Similarity=0.068 Sum_probs=214.8
Q ss_pred ceEEecCCCC----CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh------CCCCCCcEEEeC
Q 038499 77 RLTYADHTAS----GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL------GGGQEDAMIFCG 146 (609)
Q Consensus 77 ~~vyld~~a~----g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~------g~~~~~~vift~ 146 (609)
+++.|+.+.. -+.++.+.+++.+.+......+.. .| ..++|+.+++++ +++++ +|+++
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~~~~Y~~~----~G------~~~lr~~ia~~~~~~~~~~~~~~-~i~~t- 101 (404)
T PRK09265 34 KILKLNIGNPAPFGFEAPDEILRDVIRNLPTAQGYSDS----KG------LFSARKAIMQYYQQKGIPDVDVD-DIYIG- 101 (404)
T ss_pred CeEEecCCCCCcCCCCCCHHHHHHHHHHhhcCCCCCCC----CC------cHHHHHHHHHHHhccCCCCCCcc-cEEEe-
Confidence 4566655322 135667777777655322111111 11 346777788877 67776 89998
Q ss_pred ChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHH
Q 038499 147 SGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSK 224 (609)
Q Consensus 147 sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~a 224 (609)
+|+++++..++..+ +++|| .|+++.++|+.+...++..|++++.++.+. ++.+|+++++++
T Consensus 102 ~G~~~~l~~~~~~~---------------~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~ 164 (404)
T PRK09265 102 NGVSELIVMAMQAL---------------LNNGD--EVLVPAPDYPLWTAAVSLSGGKPVHYLCDEEAGWFPDLDDIRSK 164 (404)
T ss_pred CChHHHHHHHHHHh---------------CCCCC--EEEEeCCCCcChHHHHHHcCCEEEEEecccccCCCCCHHHHHHh
Confidence 89999998888776 37888 699999999998888888899999888764 457899999999
Q ss_pred HhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEEcCC
Q 038499 225 LELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFLSTH 297 (609)
Q Consensus 225 l~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~S~h 297 (609)
+. ++++++++++++||||.+.+ +++|+++|++||+++|+|+++..-. ....+..+.....-+++.|++
T Consensus 165 ~~-----~~~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~S 239 (404)
T PRK09265 165 IT-----PRTKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVTFNGLS 239 (404)
T ss_pred cc-----ccceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEEEecch
Confidence 87 57999999999999999999 7889999999999999999965311 111111111111234567899
Q ss_pred CCCCCCC-CcEEEEEe--chhhc--cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHH
Q 038499 298 KFLGGPG-SPGILLMT--KALYQ--LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK 372 (609)
Q Consensus 298 K~lggp~-g~G~L~~~--~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~ 372 (609)
|.+|.|+ .+|++++. +.+.. ++.+.. ......+++.+.+.+. .+++ .
T Consensus 240 K~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~q~~~--~~~l-~ 291 (404)
T PRK09265 240 KAYRVAGFRVGWMVLSGPKKHAKGYIEGLDM-------------------------LASMRLCANVPAQHAI--QTAL-G 291 (404)
T ss_pred hhccCcccceEEEEEeCchHHHHHHHHHHHH-------------------------HhccccCCCcHHHHHH--HHHh-c
Confidence 9997664 48999974 22100 111100 0000112222333221 1111 1
Q ss_pred HhcCHHHH---HHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHH
Q 038499 373 EYIGHEVI---KKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLL 449 (609)
Q Consensus 373 ~~~g~~~i---~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 449 (609)
+....+.+ .++..+.++++.+.|++++++++..+ ..+++.|...+ ... .+..-+...+.+.|
T Consensus 292 ~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p----~~g~~l~~~~~-~~~----------~~~~~~~~~~~~~l 356 (404)
T PRK09265 292 GYQSINELILPGGRLYEQRDRAWELLNAIPGVSCVKP----KGALYAFPKLD-PKV----------YPIHDDEQFVLDLL 356 (404)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCC----CcceEEEEEec-ccc----------cCCCCHHHHHHHHH
Confidence 11111222 13455567788888888878776544 34555554443 110 00001233455655
Q ss_pred hhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 450 NDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 450 ~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+.||.+++|..|..+ .++++|+++. .++++++..++.|+.+++.
T Consensus 357 -~~~gv~v~pg~~F~~~---------------------------~~~~~Ri~~~--~~~e~l~~~l~rl~~~l~~ 401 (404)
T PRK09265 357 -LQEKVLLVQGTGFNWP---------------------------EPDHFRIVTL--PRVDDLEEAIGRIGRFLSG 401 (404)
T ss_pred -HhCCEEEECchhhCCC---------------------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 5579999988765311 2589999995 6889999999999887753
|
|
| >TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-21 Score=211.59 Aligned_cols=342 Identities=14% Similarity=0.029 Sum_probs=220.9
Q ss_pred ceEEecCCCC-----CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEEe
Q 038499 77 RLTYADHTAS-----GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG------GQEDAMIFC 145 (609)
Q Consensus 77 ~~vyld~~a~-----g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~------~~~~~vift 145 (609)
+.+.+..+-. -++++.+.+++.+.+.....+ .|. ......++|+.+++++|. +++ +|++|
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~~----~Y~----~~~g~~~lr~~ia~~l~~~~~~~~~~~-~ii~t 102 (403)
T TIGR01265 32 PIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKFN----GYA----PSVGALAAREAVAEYLSSDLPGKLTAD-DVVLT 102 (403)
T ss_pred CeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCCC----CCC----CCCCCHHHHHHHHHHHHhhcCCCCCHH-HEEEe
Confidence 4555555433 255677888887766432111 010 112255678888888874 344 89998
Q ss_pred CChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHH
Q 038499 146 GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRS 223 (609)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~ 223 (609)
+|+++++..++.++. .+|| .|+++.++|..+...++..|++++.++++. ++.+|++++++
T Consensus 103 -~G~t~al~~~~~~l~---------------~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 164 (403)
T TIGR01265 103 -SGCSQAIEICIEALA---------------NPGA--NILVPRPGFPLYDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEA 164 (403)
T ss_pred -cChHHHHHHHHHHhC---------------CCCC--EEEEeCCCchhHHHHHHHcCCEEEEecCCcccCCccCHHHHHH
Confidence 788889999988773 6888 699999999887777888999999998754 46799999999
Q ss_pred HHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCCCCCCccEEEEcC
Q 038499 224 KLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQTDGYDAIFLST 296 (609)
Q Consensus 224 al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~~~~D~v~~S~ 296 (609)
++. ++++++++++++||||.+.+ +++|.++|+++|+++|+|++++.-.. ...+..+.....-+++.|+
T Consensus 165 ~~~-----~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~ 239 (403)
T TIGR01265 165 LAD-----EKTVAIVVINPSNPCGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGI 239 (403)
T ss_pred HhC-----cCccEEEEecCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeec
Confidence 887 57899999999999999987 78899999999999999999763221 1122222111123667799
Q ss_pred CCCCCCCC-CcEEEEEec--hhhc---cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHH
Q 038499 297 HKFLGGPG-SPGILLMTK--ALYQ---LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFW 370 (609)
Q Consensus 297 hK~lggp~-g~G~L~~~~--~~~~---l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~ 370 (609)
+|.++.|+ .+|++++.+ .+.. ++.+... .....+.+.+.+. ++...
T Consensus 240 SK~~~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~q~---~~~~~ 291 (403)
T TIGR01265 240 SKRWVVPGWRLGWIIIHDPHGIFRDTVLQGLKNL-------------------------LQRILGPATIVQG---ALPDI 291 (403)
T ss_pred ccccCCCcceEEEEEEeCchhhhHHHHHHHHHHH-------------------------hhhhcCCChHHHH---HHHHH
Confidence 99987674 599999853 2200 1111000 0001122233332 22222
Q ss_pred HHH--hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHH
Q 038499 371 VKE--YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATL 448 (609)
Q Consensus 371 ~~~--~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 448 (609)
+.+ ....+..+++.++.++++.+.|+.++++.+..+ ..+++.+...+... .....+..++++.
T Consensus 292 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~~g~f~~~~~~~~~-----------~~~~~~~~~~~~~ 356 (403)
T TIGR01265 292 LENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCPKP----EGAMYLMVKLELEL-----------FPEIKDDVDFCEK 356 (403)
T ss_pred HHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCC----CceeEEEEeccccc-----------cCCCCCHHHHHHH
Confidence 211 123455566677778888899988878775544 23444444333010 0001245678777
Q ss_pred HhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 449 LNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 449 L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
|.++.||.+++|..|. .++++||+++. .+++++..++.|.+++++
T Consensus 357 l~~~~gv~v~pg~~f~-----------------------------~~~~iRis~~~--~~~~l~~~l~~l~~~~~~ 401 (403)
T TIGR01265 357 LVREESVICLPGSAFG-----------------------------LPNWVRITITV--PESMLEEACSRIKEFCER 401 (403)
T ss_pred HHHhCCEEEeCccccC-----------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 6666899999887653 14899999983 577888888888777643
|
This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley. |
| >TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-22 Score=212.84 Aligned_cols=342 Identities=11% Similarity=-0.052 Sum_probs=219.4
Q ss_pred ceEEecCCCC-----CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC-----CCCCCcEEEeC
Q 038499 77 RLTYADHTAS-----GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG-----GGQEDAMIFCG 146 (609)
Q Consensus 77 ~~vyld~~a~-----g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g-----~~~~~~vift~ 146 (609)
+.+.|..+.. -+.++.+.+++.+.+... +...|. ......++|+.++++++ .+++ +|++|
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~----~~~g~~~lr~aia~~~~~~~~~~~~~-~i~~t- 101 (401)
T TIGR01264 32 PMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSG----KYNGYA----PTVGALSAREAIASYYHNPDGPIEAD-DVVLC- 101 (401)
T ss_pred CeeecCCCCCCCcCCCCCCHHHHHHHHHHHhcc----CCCCCC----CCCCCHHHHHHHHHHHhhcCCCCCHH-HEEEC-
Confidence 4455554433 245667788877765431 100010 11123567778888876 4555 78887
Q ss_pred ChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHH
Q 038499 147 SGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSK 224 (609)
Q Consensus 147 sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~a 224 (609)
+|+++++..++.++ +++|| .|+++.+.|+.+...++..|++++.++++. ++.+|+++|+++
T Consensus 102 ~G~~~al~~~~~~l---------------~~~gd--~v~i~~P~y~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~ 164 (401)
T TIGR01264 102 SGCSHAIEMCIAAL---------------ANAGQ--NILVPRPGFPLYETLAESMGIEVKLYNLLPDKSWEIDLKQLESL 164 (401)
T ss_pred cChHHHHHHHHHHh---------------CCCCC--EEEEeCCCChhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHH
Confidence 88888999988877 37888 688888889888888889999999998754 468999999998
Q ss_pred HhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEEcCC
Q 038499 225 LELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFLSTH 297 (609)
Q Consensus 225 l~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~S~h 297 (609)
++ .+++++++++++||||.+.+ +++|+++|+++|+++++|+++..-. ....+..+.....-+++.|++
T Consensus 165 ~~-----~~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfS 239 (401)
T TIGR01264 165 ID-----EKTAALIVNNPSNPCGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLA 239 (401)
T ss_pred hc-----cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCc
Confidence 87 46899999999999999986 6778899999999999999965321 111222221111236778999
Q ss_pred CCCCCCC-CcEEEEEech--hh-c-cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHH
Q 038499 298 KFLGGPG-SPGILLMTKA--LY-Q-LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK 372 (609)
Q Consensus 298 K~lggp~-g~G~L~~~~~--~~-~-l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~ 372 (609)
|.++.|+ .+|++++++. .. . ++.+... .....+.+.+.+.+ +..++ .
T Consensus 240 K~~~~~GlRiG~iv~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~q~a--~~~~l-~ 291 (401)
T TIGR01264 240 KRWLVPGWRLGWIIIHDRRGILRDIRDGLVKL-------------------------SQRILGPCTIVQGA--LPSIL-L 291 (401)
T ss_pred ccCCCccceEEEEEecCcchhHHHHHHHHHHH-------------------------hhccCCCCcHHHHH--HHHHH-H
Confidence 9877664 4999998742 10 0 1111000 00011222233322 22222 2
Q ss_pred H--hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHh
Q 038499 373 E--YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLN 450 (609)
Q Consensus 373 ~--~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 450 (609)
+ ....+..+++.++.++++.+.|+.++++.+..+ ..+++.|.-.+ ... .....+...+++.|.
T Consensus 292 ~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p----~~g~f~~~~~~-~~~----------~~~~~~~~~~~~~l~ 356 (401)
T TIGR01264 292 RTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMP----SGAMYMMVGIE-MEH----------FPEFKNDVEFTERLV 356 (401)
T ss_pred hCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCC----CeeeEEEEEec-ccc----------cCCCCCHHHHHHHHH
Confidence 2 123455666777778888899988877665433 34555555432 100 000124567777776
Q ss_pred hhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 451 DLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 451 ~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++||.+++|..|. .++++||+++. .+++++..++.|..++++
T Consensus 357 ~~~gI~v~pg~~f~-----------------------------~~~~iRis~~~--~~~~l~~~l~rl~~~~~~ 399 (401)
T TIGR01264 357 AEQSVFCLPGSCFE-----------------------------YPGFFRVVLTV--PVVMMEEACSRIQEFCER 399 (401)
T ss_pred HhCCEEEeCchhcC-----------------------------CCCeEEEEEcC--CHHHHHHHHHHHHHHHhc
Confidence 66799999886543 14899999983 578899999888887653
|
This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs. |
| >cd00609 AAT_like Aspartate aminotransferase family | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-22 Score=212.20 Aligned_cols=294 Identities=20% Similarity=0.162 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHhCCC------CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH
Q 038499 123 VHEASNYIKKCLGGG------QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~------~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (609)
..++++.++++++.. ++ +++++ +|+++++..++..+. ++|+ +|+++...|+++..
T Consensus 38 ~~~l~~~l~~~l~~~~~~~~~~~-~~~~~-~~~t~a~~~~~~~~~---------------~~g~--~vl~~~~~~~~~~~ 98 (350)
T cd00609 38 LPELREAIAEWLGRRGGVDVPPE-EIVVT-NGAQEALSLLLRALL---------------NPGD--EVLVPDPTYPGYEA 98 (350)
T ss_pred cHHHHHHHHHHHHHHhCCCCCcc-eEEEe-cCcHHHHHHHHHHhC---------------CCCC--EEEEcCCCchhHHH
Confidence 344555555555433 33 78888 677778888888763 5677 79999999999999
Q ss_pred HHHHcCceEEEEecCCCCCCCH--HHHHHHHhhhccCCCceEEEEecccCccccccCHHHH---HHHHHHhCCeEEEecc
Q 038499 197 SWRQSLAEVVEIGLDDDGLLDI--EALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSI---ARLLHQYGGFACFDFA 271 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~~~g~ld~--e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I---~~la~~~g~~vivD~A 271 (609)
.++..|++++.++.++++..+. +.++..+. ++++++++++++|+||.+.|++++ .++|+++|+++++|++
T Consensus 99 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-----~~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a 173 (350)
T cd00609 99 AARLAGAEVVPVPLDEEGGFLLDLELLEAAKT-----PKTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEA 173 (350)
T ss_pred HHHHCCCEEEEEecccccCCccCHHHHHhhcC-----ccceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecc
Confidence 9999999999999988776665 56665554 689999999999999999986655 5899999999999999
Q ss_pred ccCCccc-ccC---CCCCCCCccEEEEcCCCCCC-CCCCcEEEEEec-hhhccCCCCCCccCCCceEeeccccccccccc
Q 038499 272 ASGPYVE-IDV---RSGQTDGYDAIFLSTHKFLG-GPGSPGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 272 ~~~~~~~-id~---~~~~~~~~D~v~~S~hK~lg-gp~g~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
++.+... ... ......+.|+++.|+||+++ ++.+.|++++++ ++ ++.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~--~~~~~~~--------------------- 230 (350)
T cd00609 174 YAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEEL--LERLKKL--------------------- 230 (350)
T ss_pred hhhceeCCcccccccCcCccCcEEEEeecccccCCcccceEEEecCHHHH--HHHHHHH---------------------
Confidence 8764321 111 11122367899999999998 445689999998 56 2232111
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCC
Q 038499 346 EDIEERESGGTPQVIQMIRAALAFWVKEY-IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424 (609)
Q Consensus 346 ~~~~~r~~~gtp~i~~~~~aal~~~~~~~-~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~ 424 (609)
.+....+++......+. ..++.. .+.+.+.++.+++++++.+.|.+++...+.. +..+++.+...+ ..
T Consensus 231 ----~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~----~~~g~~~~~~~~-~~ 299 (350)
T cd00609 231 ----LPYTTSGPSTLSQAAAA--AALDDGEEHLEELRERYRRRRDALLEALKELGPLVVVK----PSGGFFLWLDLP-EG 299 (350)
T ss_pred ----HHhcccCCChHHHHHHH--HHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCccccC----CCccEEEEEecC-CC
Confidence 11112334433332222 222222 4577888889999999999999876554321 233455444433 11
Q ss_pred CCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCC
Q 038499 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPY 504 (609)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~ 504 (609)
.+...+.++|. ++||.++.+..+.. . .+.++|++++.
T Consensus 300 ---------------~~~~~~~~~l~-~~gi~i~~~~~~~~-------~--------------------~~~~iRi~~~~ 336 (350)
T cd00609 300 ---------------DDEEFLERLLL-EAGVVVRPGSAFGE-------G--------------------GEGFVRLSFAT 336 (350)
T ss_pred ---------------ChHHHHHHHHH-hCCEEEeccccccc-------C--------------------CCCeEEEEeeC
Confidence 24556667774 57999997655431 0 25799999987
Q ss_pred CCCHHHHHHHHHHHH
Q 038499 505 YMSNEEFEFTLEALE 519 (609)
Q Consensus 505 ~~t~eeid~ll~al~ 519 (609)
. ++|+++++++|+
T Consensus 337 ~--~~~i~~~~~al~ 349 (350)
T cd00609 337 P--EEELEEALERLA 349 (350)
T ss_pred C--HHHHHHHHHHhh
Confidence 7 999999999986
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi |
| >PRK07337 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.6e-22 Score=210.81 Aligned_cols=342 Identities=15% Similarity=0.081 Sum_probs=216.6
Q ss_pred ceEEecCCCCCC-ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASGR-SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g~-~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal 153 (609)
.+++++.+.... .++.+.+++.+.+... .. .|....+..++++.+.+++.+.+|. +++ +|++| +|+++++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~----~~-~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~t-~G~~~al 103 (388)
T PRK07337 31 DIIHMGIGEPDFTAPEPVVEAAARALRRG----VT-QYTSALGLAPLREAIAAWYARRFGLDVAPE-RIVVT-AGASAAL 103 (388)
T ss_pred CEEEeCCcCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHhCCCCChH-hEEEe-cCcHHHH
Confidence 578888876553 4667788887765421 11 1111112233333333344333453 555 89998 7888899
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~ 231 (609)
..++..+ +++|| .|+++.++|+.+...++..|++++.++++. ++.+|+++|++++.
T Consensus 104 ~~~~~~l---------------~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~----- 161 (388)
T PRK07337 104 LLACLAL---------------VERGD--EVLMPDPSYPCNRHFVAAAEGRPVLVPSGPAERFQLTAADVEAAWG----- 161 (388)
T ss_pred HHHHHHh---------------cCCCC--EEEEeCCCchhhHHHHHHcCCEEEEeecCCccCCcCCHHHHHhhcC-----
Confidence 9888876 37888 699999999999888888999999999874 45899999999987
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCC-cc--cccCCCCCCCCcc-EEEEcCCCCCCCCC
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-YV--EIDVRSGQTDGYD-AIFLSTHKFLGGPG 304 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~-~~--~id~~~~~~~~~D-~v~~S~hK~lggp~ 304 (609)
++++++++++++||||.+.+ +++|+++|++||+++++|+++..- +. +...... +.+ +++.|++|.+|.|+
T Consensus 162 ~~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~---~~~vi~~~S~SK~~~~~G 238 (388)
T PRK07337 162 ERTRGVLLASPSNPTGTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSALSL---GDDVITINSFSKYFNMTG 238 (388)
T ss_pred ccceEEEEECCCCCCCcCcCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcChhhc---cCCEEEEEechhhcCCch
Confidence 68899999999999999987 577889999999999999986531 11 1111111 223 45669999997553
Q ss_pred -CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh-cCHHHHHH
Q 038499 305 -SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY-IGHEVIKK 382 (609)
Q Consensus 305 -g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~-~g~~~i~~ 382 (609)
.+|++++++++ ++.+.... .....+++.+.+.+ ++.++..+. ...+..++
T Consensus 239 ~RiG~~~~~~~l--~~~l~~~~------------------------~~~~~~~s~~~q~~--~~~~l~~~~~~~~~~~~~ 290 (388)
T PRK07337 239 WRLGWLVVPEAL--VGTFEKLA------------------------QNLFICASALAQHA--ALACFEPDTLAIYERRRA 290 (388)
T ss_pred hheeeeecCHHH--HHHHHHHH------------------------HHhccCCChHHHHH--HHHHhccCchHHHHHHHH
Confidence 48999999877 33321110 00111222333322 112221010 11344556
Q ss_pred HHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcc
Q 038499 383 QEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCA 462 (609)
Q Consensus 383 ~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ 462 (609)
+.++.++++.+.|+++ ++.+... +..+++.|.-.+ ... .....+..+++..|.++.||.+.+|..
T Consensus 291 ~~~~~r~~~~~~L~~~-~~~~~~~---p~~g~f~~~~~~-~~~----------~~~~~~~~~~~~~ll~~~gv~v~pg~~ 355 (388)
T PRK07337 291 EFKRRRDFIVPALESL-GFKVPVM---PDGAFYVYADCR-GVA----------HPAAGDSAALTQAMLHDAGVVLVPGRD 355 (388)
T ss_pred HHHHHHHHHHHHHHhc-CCccccC---CCeeEEEEEecc-ccc----------CCCCCCHHHHHHHHHHhCCEEEeCchh
Confidence 6677778888888876 5543211 234555554433 100 001135667777766668999998876
Q ss_pred cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 463 CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 463 ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
|..+. .++++||+++. ++++++..++.|.++
T Consensus 356 f~~~~--------------------------~~~~~Ri~~~~--~~~~l~~~l~rl~~~ 386 (388)
T PRK07337 356 FGPHA--------------------------PRDYIRLSYAT--SMSRLEEAVARLGKL 386 (388)
T ss_pred hCCCC--------------------------CCCEEEEEecC--CHHHHHHHHHHHHHH
Confidence 64210 14899999984 577777777777654
|
|
| >PRK04635 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-22 Score=214.51 Aligned_cols=283 Identities=17% Similarity=0.082 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccchHHHHHHc
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
..++|+.+++++|++++ +|++| +|++++|..++.++. ++| | .|++..+.|+.+...++..
T Consensus 62 ~~~Lr~aia~~~~~~~~-~I~it-~Gs~~~i~~~~~~~~---------------~~g~d--~vlv~~P~y~~y~~~~~~~ 122 (354)
T PRK04635 62 PPELINAYSAYAGVAPE-QILTS-RGADEAIELLIRAFC---------------EPGQD--SIACFGPTYGMYAISAETF 122 (354)
T ss_pred HHHHHHHHHHHhCcCHH-HEEEe-CCHHHHHHHHHHHhc---------------CCCCC--eEEEcCCChHHHHHHHHHc
Confidence 35688999999999887 89998 899999999998873 677 6 6888999998887788889
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHh-CCeEEEeccccCCccccc
Q 038499 202 LAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY-GGFACFDFAASGPYVEID 280 (609)
Q Consensus 202 G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~-g~~vivD~A~~~~~~~id 280 (609)
|++++.++++.++.+|++.++ ++ ++++++++++|+||||.+.|.+++.++++.. ++++|+|+++........
T Consensus 123 g~~v~~v~~~~~~~~~~~~l~-~~------~~~~li~i~nP~NPTG~~~~~~~l~~l~~~~~~~~vivDeay~~~~~~~s 195 (354)
T PRK04635 123 NVGVKALPLTADYQLPLDYIE-QL------DGAKLVFICNPNNPTGTVIDRADIEQLIEMTPDAIVVVDEAYIEFCPEYS 195 (354)
T ss_pred CCEEEEEecCCCCCCCHHHHH-hc------cCCCEEEEeCCCCCCCccCCHHHHHHHHHhCCCcEEEEeCchHhhccCcc
Confidence 999999999877889999886 33 3789999999999999999999999999874 799999999653221111
Q ss_pred CCCC-CCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 281 VRSG-QTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 281 ~~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
+... ....--+++.|++|++|.| .++|++++++++ ++.+...... .+.+.
T Consensus 196 ~~~~~~~~~~~iv~~S~SK~~~l~GlRlG~~i~~~~~--~~~l~~~~~~--------------------------~~~~~ 247 (354)
T PRK04635 196 VADLLASYPNLVVLRTLSKAFALAGARCGFTLANEEL--IEILMRVIAP--------------------------YPVPL 247 (354)
T ss_pred hHHHHhhCCCEEEEechHHHhhhhHHHHhhhhCCHHH--HHHHHhhcCC--------------------------CCCCH
Confidence 1110 0011135677999999733 348999999888 3333211000 11222
Q ss_pred HHHHHHHHHHHHHHHhcCHHHH---HHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVI---KKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i---~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
..+ .++++++ +..+.+.+ .++.++.++++.+.|+++++++++.+. .+++ +.-.+
T Consensus 248 ~~~--~~a~~~l--~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~----g~f~-~~~~~-------------- 304 (354)
T PRK04635 248 PVS--EIATQAL--SEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLEGN----GNYV-LAKFD-------------- 304 (354)
T ss_pred HHH--HHHHHHH--hcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECCCC----CcEE-EEECC--------------
Confidence 222 2233333 22333333 344555668888999888777776542 2333 22222
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTL 515 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll 515 (609)
+..++.+.|.+ .||.++.+ ..+ + .++++|||++ +.+|+++++
T Consensus 305 -----~~~~~~~~l~~-~gv~v~~~---~~~------~--------------------~~~~lRis~~---~~e~~~~l~ 346 (354)
T PRK04635 305 -----DVDAVFKALWD-AGIVARAY---KDP------R--------------------LANCIRFSFS---NRAETDKLI 346 (354)
T ss_pred -----CHHHHHHHHHH-CCEEEEEC---CCC------C--------------------CCCeEEEEeC---CHHHHHHHH
Confidence 35677777754 69999843 211 0 1589999986 899999999
Q ss_pred HHHHH
Q 038499 516 EALEF 520 (609)
Q Consensus 516 ~al~~ 520 (609)
++|++
T Consensus 347 ~al~~ 351 (354)
T PRK04635 347 GLIRN 351 (354)
T ss_pred HHHHH
Confidence 99975
|
|
| >PRK13580 serine hydroxymethyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=209.18 Aligned_cols=351 Identities=17% Similarity=0.157 Sum_probs=227.9
Q ss_pred CCChHHHHHHHHHhhcCCccC--CCCCCchhhHHH-HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcc-
Q 038499 87 GRSLRYIENYIINNVLPFYGN--THTCDSYVGQHT-TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGI- 162 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n--~~~~~~~~~~~~-~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~- 162 (609)
....+.|.+++...+...|+. |+.. ++.|... .++...+.+..+++||++.. +|=.- ||+.+++..+...+.-
T Consensus 59 N~~s~~v~~a~~s~l~nkyaeg~pg~r-yy~g~~~~d~ie~l~~~ra~~lf~a~~a-nvqp~-Sg~~An~~v~~all~~~ 135 (493)
T PRK13580 59 NYSSLAVQLAMGNLLTDKYAEGTPGHR-FYAGCQNVDTVEWEAAEHAKELFGAEHA-YVQPH-SGADANLVAFWAILAHK 135 (493)
T ss_pred ccCCHHHHHHhcccccccCcCCCCCcc-ccCCCchHHHHHHHHHHHHHHHhCCCcc-cccCC-CcHHHHHHHHHHHhccc
Confidence 355677888887777766643 3332 3444443 45666688899999999876 55444 8999876666554420
Q ss_pred -cch-----h----------hHHHHHHhhhcCCCceEEEECCCCccchHH-----HHHHcCceEEEEecCC-CCCCCHHH
Q 038499 163 -AVP-----S----------ILREKLIKCLRDEERWVVFVGPHEHHSNLL-----SWRQSLAEVVEIGLDD-DGLLDIEA 220 (609)
Q Consensus 163 -~~~-----~----------~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-----~~~~~G~~vv~v~~~~-~g~ld~e~ 220 (609)
..| + .|. .+-+ .-.|| .|+.-+..|..... .+.....+++..++++ +|.+|+++
T Consensus 136 ~~~p~~~~~g~~~~~~~~~~~~~-~~~~-~~~gd--~i~~l~l~~GGHlthg~~~n~~~~~~~~~~y~vd~~~g~iD~d~ 211 (493)
T PRK13580 136 VESPALEKLGAKTVNDLTEEDWE-ALRA-ELGNQ--RLLGMSLDSGGHLTHGFRPNISGKMFHQRSYGVDPDTGLLDYDE 211 (493)
T ss_pred ccCcchhccccccccccchhhhh-hhhc-cCCCC--EEEeecCCCCCeeecCcccchhhheeeeEecccCcccCccCHHH
Confidence 000 0 000 0000 00156 46665555533221 1222235667777775 68999999
Q ss_pred HHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCC---CCCCCccEEEEcCC
Q 038499 221 LRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRS---GQTDGYDAIFLSTH 297 (609)
Q Consensus 221 L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~---~~~~~~D~v~~S~h 297 (609)
+++.++ ++++++++++.+|..+ ..|+++|.++|++||+++++|+||++|.+..+... ....++|++++|+|
T Consensus 212 l~~~~~-----~~~plvii~g~S~~~~-~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~~~~~~~~~~~D~vtgT~h 285 (493)
T PRK13580 212 IAALAR-----EFKPLILVAGYSAYPR-RVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVFTGDEDPVPHADIVTTTTH 285 (493)
T ss_pred HHHHHh-----hcCCEEEEeCccccCC-CcCHHHHHHHHHHcCCEEEEECchhhceeccccchhhcCCCCCCcEEEeCCh
Confidence 999998 5677888889999955 77999999999999999999999999988766532 11247899999999
Q ss_pred CCCCCCCCcEEEEEechhhccCCC---CCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh
Q 038499 298 KFLGGPGSPGILLMTKALYQLGSF---PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY 374 (609)
Q Consensus 298 K~lggp~g~G~L~~~~~~~~l~~~---~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~ 374 (609)
|+|+||.| |++++++++ ++.+ .|.. .|++....++++++++.....
T Consensus 286 KaL~GP~G-G~I~~~~~l--~~~L~~a~P~i----------------------------~gg~l~p~iAA~avAl~e~~~ 334 (493)
T PRK13580 286 KTLRGPRG-GLVLAKKEY--ADAVDKGCPLV----------------------------LGGPLPHVMAAKAVALAEART 334 (493)
T ss_pred hhccCCCe-EEEEecHHH--HHHHhhCCCcc----------------------------cCCCccHHHHHHHHHHHHHhC
Confidence 99988997 999999887 2222 2222 233322233333333332222
Q ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcC
Q 038499 375 IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFG 454 (609)
Q Consensus 375 ~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~G 454 (609)
......+++..++++++.+.|.+. |+.++... ...+++.+.+.+ .. .....+.+.|.+ .|
T Consensus 335 ~ef~~y~~~l~~Na~~La~~L~~~-G~~vv~gg--TdshIV~V~lg~-~~---------------~~g~~a~~~L~e-~G 394 (493)
T PRK13580 335 PEFQKYAQQVVDNARALAEGFLKR-GARLVTGG--TDNHLVLIDVTS-FG---------------LTGRQAESALLD-AG 394 (493)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhc-CCCccCCC--CCCCEEEEEeCC-HH---------------HHHHHHHHHHHH-CC
Confidence 344667889999999999999887 88876421 234777777654 11 123456667754 69
Q ss_pred cEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCC----CCCHHHHHHHHHHHHHHHHh
Q 038499 455 IQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPY----YMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 455 I~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~----~~t~eeid~ll~al~~v~~~ 524 (609)
|.+..-.....|.+. ..+..|||+++. .++++|+++++++|..+++.
T Consensus 395 I~vn~i~~Ptvp~g~-----------------------~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~~ 445 (493)
T PRK13580 395 IVTNRNSIPSDPNGA-----------------------WYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLSN 445 (493)
T ss_pred eEEccccCCCCCCCC-----------------------CCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHHh
Confidence 998743322222111 014779999987 44699999999999998874
|
|
| >cd06502 TA_like Low-specificity threonine aldolase (TA) | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.5e-22 Score=212.64 Aligned_cols=315 Identities=15% Similarity=0.065 Sum_probs=198.7
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
+++.+.+++.+..... . . + ......+++++.+++++| ++ +++++++|+ +++..++.++
T Consensus 10 ~~~~v~~a~~~~~~~~---~--~-~----~~~~~~~~l~~~~a~~~g--~~-~~~~~~~gt-~a~~~~~~~l-------- 67 (338)
T cd06502 10 PTPEMLEAMAAANVGD---D--V-Y----GEDPTTAKLEARAAELFG--KE-AALFVPSGT-AANQLALAAH-------- 67 (338)
T ss_pred CCHHHHHHHHhcccCC---c--c-c----CCCHHHHHHHHHHHHHhC--CC-eEEEecCch-HHHHHHHHHh--------
Confidence 4556778877654311 1 1 1 113457889999999999 33 677876776 5677777665
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHH---HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhc--cCCCceEEEEeccc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLL---SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYK--DAKRPILGSFSACS 243 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~---~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~--~~~~~~lv~~s~~s 243 (609)
+++|| .|++++..|.++.. ..+..|++++.++.+. +.+|+++|++++++.. ..++++++++++++
T Consensus 68 -------~~~gd--~v~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~ 137 (338)
T cd06502 68 -------TQPGG--SVICHETAHIYTDEAGAPEFLSGVKLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTT 137 (338)
T ss_pred -------cCCCC--eEEEecCcceeeecCCcHHHHcCceEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeec
Confidence 37888 68899999987653 2345799999999765 6799999999997311 01368999999999
Q ss_pred Ccccc--ccCHHHHHHHHHHhCCeEEEeccccCCc---ccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhcc
Q 038499 244 NVTGI--YSDTRSIARLLHQYGGFACFDFAASGPY---VEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQL 318 (609)
Q Consensus 244 n~TG~--~~dl~~I~~la~~~g~~vivD~A~~~~~---~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l 318 (609)
|++|. ..++++|+++|++||+++++|+|+..+. ....+... ..++|+++.|+||++|+|+| ++++.++++ +
T Consensus 138 n~g~~~~~~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~-~~~~d~~~~s~sK~~~~~~g-~~~~~~~~~--~ 213 (338)
T cd06502 138 EGGTVYPLDELKAISALAKENGLPLHLDGARLANAAAALGVALKTY-KSGVDSVSFCLSKGGGAPVG-AVVVGNRDF--I 213 (338)
T ss_pred CCccccCHHHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHH-HhcCCEEEEeccccCCCccc-eEEECCHHH--H
Confidence 97443 3456789999999999999999863221 00111111 12679999999999998764 566677776 3
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
+.+.+... ...++....+.. .+++.. + +..+.....++..++++++.+.|++
T Consensus 214 ~~~~~~~~-------------------------~~~~~~~~~~~~~~a~~~~-L-~~~~~~~~~~~~~~~~~~l~~~L~~ 266 (338)
T cd06502 214 ARARRRRK-------------------------QAGGGMRQSGFLAAAGLAA-L-ENDLWLRRLRHDHEMARRLAEALEE 266 (338)
T ss_pred HHHHHHHH-------------------------HhCCChhhHHHHHHHHHHH-h-cCchHHHHHHHHHHHHHHHHHHHHh
Confidence 33322110 001222222222 222222 2 2234555667888888999999988
Q ss_pred CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhh--hcCcEeccCcccCChhhhhhcCCC
Q 038499 398 NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLND--LFGIQARGGCACAGPYGHHLLDLD 475 (609)
Q Consensus 398 ~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~--~~GI~v~~G~~ca~p~~~~ll~i~ 475 (609)
+ ++.+.. ...+++.+.... .. .....+.+.+.+ ..||.++..
T Consensus 267 ~-~~~~~~----~~~~~~~v~~~~-~~---------------~~~~~l~~~l~~~~~~gi~~~~~--------------- 310 (338)
T cd06502 267 L-GGLESE----VQTNIVLLDPVE-AN---------------AVFVELSKEAIERRGEGVLFYAW--------------- 310 (338)
T ss_pred c-CCCccc----ccCCeEEEecCC-cc---------------HHHHHHHHHHHHhhhCCEEEEec---------------
Confidence 7 444332 234555554432 10 011122222210 347776521
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
..+++|+++++++|++|+++++++++.
T Consensus 311 ------------------~~~~lRi~~~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 311 ------------------GEGGVRFVTHWDTTEEDVDELLSALKA 337 (338)
T ss_pred ------------------CCCeEEEEeecCCCHHHHHHHHHHHhc
Confidence 126899999999999999999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway. |
| >PRK07568 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=208.78 Aligned_cols=337 Identities=12% Similarity=0.023 Sum_probs=219.4
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh-----CCCCCCcEEEeCChHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL-----GGGQEDAMIFCGSGTT 150 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~-----g~~~~~~vift~sGtt 150 (609)
++++++.+... +.++.+.+++.+........+. .....++|+.+++++ +.+++ +|++| +|++
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~Y~~----------~~g~~~lr~~ia~~~~~~~~~~~~~-~i~~t-~G~~ 98 (397)
T PRK07568 31 KVYHLNIGQPDIKTPEVFFEAIKNYDEEVLAYSH----------SQGIPELREAFAKYYKKWGIDVEPD-EILIT-NGGS 98 (397)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHhcCCcCcCC----------CCCCHHHHHHHHHHHHHhCCCCCcc-eEEEc-CChH
Confidence 47888887764 4677788887654322211111 112455677777776 45565 89998 7888
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CC-C-CCHHHHHHHHhh
Q 038499 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DG-L-LDIEALRSKLEL 227 (609)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g-~-ld~e~L~~al~~ 227 (609)
+++..++..+ +++|| .|+++.+.|+.+...++..|++++.++.+. +| . .++++|+++++
T Consensus 99 ~al~~~~~~l---------------~~~gd--~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~- 160 (397)
T PRK07568 99 EAILFAMMAI---------------CDPGD--EILVPEPFYANYNGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLIT- 160 (397)
T ss_pred HHHHHHHHHh---------------cCCCC--EEEEecCCCccHHHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcC-
Confidence 8999887765 37888 688888777766666778899999999863 33 2 36799999887
Q ss_pred hccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCC-CCccEEEEcCCCC
Q 038499 228 YKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQT-DGYDAIFLSTHKF 299 (609)
Q Consensus 228 ~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~-~~~D~v~~S~hK~ 299 (609)
++++++++++++||||.+.+ +++|+++|+++|+++++|+++..-. ....+..... ....+++.|++|.
T Consensus 161 ----~~~~~v~i~~p~NPtG~~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~ 236 (397)
T PRK07568 161 ----PKTKAILISNPGNPTGVVYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKR 236 (397)
T ss_pred ----ccceEEEEECCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhh
Confidence 57899999999999999986 6789999999999999999965321 1111111110 1224777899999
Q ss_pred CCCC-CCcEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcC
Q 038499 300 LGGP-GSPGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIG 376 (609)
Q Consensus 300 lggp-~g~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g 376 (609)
+|.| ..+|+++++ +++ ++.+... .. ...+++.+.+.+.+ . ++.. ...
T Consensus 237 ~~~~G~R~G~~~~~~~~~--~~~~~~~------------------------~~-~~~~~s~~~q~~~~--~-~l~~~~~~ 286 (397)
T PRK07568 237 YSACGARIGCLISKNKEL--IAAAMKL------------------------CQ-ARLSPPTLEQIGAA--A-LLDTPESY 286 (397)
T ss_pred ccCCCcceEEEecCCHHH--HHHHHHH------------------------hh-ccCCCCcHHHHHHH--H-HhhCCHHH
Confidence 9854 359999985 455 2221000 00 01123333332211 1 1211 123
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhh----
Q 038499 377 HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDL---- 452 (609)
Q Consensus 377 ~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~---- 452 (609)
.+.+++..++.++.+.+.|++++++.+..+ ..+++.|.-.+ . .+...+++.|.++
T Consensus 287 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p----~g~~~~~~~l~-~----------------~~~~~~~~~l~~~~~~~ 345 (397)
T PRK07568 287 FDEVREEYKKRRDILYEELNKIPGVVCEKP----KGAFYIIAKLP-V----------------DDAEDFAKWLLTDFNYN 345 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceecCC----CcceEEEEecC-C----------------CCHHHHHHHHHhhcccc
Confidence 455666777788889999988877766544 33454444333 1 1356777777653
Q ss_pred -cCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 453 -FGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 453 -~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.||.+.+|..|....+ ..++++||+++ .++++++..++.|..++++
T Consensus 346 ~~gv~v~pg~~f~~~~~------------------------~~~~~iRls~~--~~~~~~~~~~~~l~~~l~~ 392 (397)
T PRK07568 346 GETVMVAPASGFYATPG------------------------LGKNEIRIAYV--LNEEDLKRAMEILKEALEK 392 (397)
T ss_pred cceEEEeCchHhcCCCC------------------------CCCCeEEEEEe--CCHHHHHHHHHHHHHHHHH
Confidence 5999998875531100 02479999997 4679999999999887764
|
|
| >PRK05166 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=208.48 Aligned_cols=287 Identities=19% Similarity=0.080 Sum_probs=198.0
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCce
Q 038499 125 EASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAE 204 (609)
Q Consensus 125 e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~ 204 (609)
++|+.+++++|++++ +|++| +|+++++..++..+ +++|| .|++..+.|+.+...++..|++
T Consensus 75 ~lr~~ia~~~~~~~~-~i~~t-~G~~~~l~~~~~~~---------------~~~gd--~vli~~P~y~~~~~~~~~~g~~ 135 (371)
T PRK05166 75 ALREAIAARTGVPAD-RIILG-NGSEDLIAVICRAV---------------LRPGD--RVVTLYPSFPLHEDYPTMMGAR 135 (371)
T ss_pred HHHHHHHHHhCcCHH-HEEEc-CCHHHHHHHHHHHh---------------cCCCC--EEEEcCCChHHHHHHHHHcCCe
Confidence 688899999999876 89998 89999999888776 37888 6899999998887788889999
Q ss_pred EEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHH--hCCeEEEeccccCCccc---c
Q 038499 205 VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVE---I 279 (609)
Q Consensus 205 vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~--~g~~vivD~A~~~~~~~---i 279 (609)
++.++.+.++.+|+++++++++ ++++++++++++||||.+.|.+++.++++. .++++++|+++..-... .
T Consensus 136 ~~~v~~~~~~~~~~~~l~~~~~-----~~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~ii~De~y~~~~~~~~~~ 210 (371)
T PRK05166 136 VERVTVTPDLGFDLDALCAAVA-----RAPRMLMFSNPSNPVGSWLTADQLARVLDATPPETLIVVDEAYAEYAAGDDYP 210 (371)
T ss_pred EEEeecCCCCCCCHHHHHHhhh-----cCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCcEEEEECcHHHhcCCcCcc
Confidence 9999998888899999999987 578999999999999999998877777664 47899999996532110 1
Q ss_pred cCCC-CC-CCCccEEEEcCCCCCCCC-CCcEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccCC
Q 038499 280 DVRS-GQ-TDGYDAIFLSTHKFLGGP-GSPGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG 355 (609)
Q Consensus 280 d~~~-~~-~~~~D~v~~S~hK~lggp-~g~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~g 355 (609)
.+-. .. .....+++.|++|.+|-| ..+|++++. +++ ++.+... +...+
T Consensus 211 ~~~~~~~~~~~~vi~i~SfSK~~~l~GlRiG~~i~~~~~l--~~~~~~~--------------------------~~~~~ 262 (371)
T PRK05166 211 SALTLLKARGLPWIVLRTFSKAYGLAGLRVGYGLVSDPEL--VGLLDRV--------------------------RTPFN 262 (371)
T ss_pred cHHHHHhhcCCCEEEEeechHhhhcchhheeeeecCCHHH--HHHHHHh--------------------------ccCCC
Confidence 1000 00 011247788999999844 458998874 455 2222100 00012
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 356 TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 356 tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
.+.+.+ .+++..+. +....+...+..++.++++.+.|+.. ++.+..+ ...++ +.-.+
T Consensus 263 ~~~~~q--~~~~~~l~-~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~p~----~g~fl-~~~~~-------------- 319 (371)
T PRK05166 263 VNGAAQ--AAALAALD-DEEHLAKGVALALAERERLKKELAEM-GYRIAPS----RANFL-FFDAR-------------- 319 (371)
T ss_pred CCHHHH--HHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHC-cCeeCCC----cCCEE-EEeCC--------------
Confidence 222222 12222221 22234555566677778888888877 6665432 23333 33222
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTL 515 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll 515 (609)
.+..++.+.|.+ .||.+++|.... .++++||+++ +.++.++++
T Consensus 320 ----~~~~~l~~~l~~-~gi~v~p~~~~~-----------------------------~~~~iRi~~~---~~~~~~~l~ 362 (371)
T PRK05166 320 ----RPASAVAEALLR-QGVIVKPWKQPG-----------------------------FETFIRVSIG---SPEENDHFV 362 (371)
T ss_pred ----CCHHHHHHHHHH-CCeEEecCCCCC-----------------------------CCCeEEEEcC---CHHHHHHHH
Confidence 145678888876 599999764211 1489999998 788899999
Q ss_pred HHHHHHHH
Q 038499 516 EALEFIAI 523 (609)
Q Consensus 516 ~al~~v~~ 523 (609)
++|+.+..
T Consensus 363 ~~l~~i~~ 370 (371)
T PRK05166 363 AALDKVLE 370 (371)
T ss_pred HHHHHHhh
Confidence 99988753
|
|
| >PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=212.92 Aligned_cols=334 Identities=17% Similarity=0.151 Sum_probs=205.4
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH
Q 038499 117 QHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196 (609)
Q Consensus 117 ~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (609)
+......+++++.++++.|+.. .++++||+. |++.++..+ +++|| +|++++.+|++...
T Consensus 60 R~~~p~~~~le~~lA~l~g~~~---av~~sSGt~-Al~~al~~l---------------l~~Gd--~Vi~~~~~y~~t~~ 118 (433)
T PRK08134 60 RISNPTVAVLEERVAALEGGVG---AIATASGQA-ALHLAIATL---------------MGAGS--HIVASSALYGGSHN 118 (433)
T ss_pred cCcChHHHHHHHHHHHHhCCCc---EEEeCCHHH-HHHHHHHHH---------------hCCCC--EEEEeCCccHHHHH
Confidence 3334568889999999999863 467756655 687776654 47898 79999999987655
Q ss_pred HH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccc
Q 038499 197 SW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA 272 (609)
Q Consensus 197 ~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~ 272 (609)
.+ ...|+++++++.+ |+++|+++|+ ++|++|++++++||+|.+.|+++|+++||+||+++++|+++
T Consensus 119 ~~~~~l~~~Gi~v~~vd~~-----d~~~l~~~i~-----~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~ 188 (433)
T PRK08134 119 LLHYTLRRFGIETTFVKPG-----DIDGWRAAIR-----PNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTF 188 (433)
T ss_pred HHHHHHhhCCeEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCC
Confidence 43 4479999999875 8999999998 68999999999999999999999999999999999999999
Q ss_pred cCCcccccCCCCCCCCccEEEEcCCCCCCCCCC-cEEEEEe-chhh--c---cCCCCCCccCCCceEeecccccccc--c
Q 038499 273 SGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS-PGILLMT-KALY--Q---LGSFPPSTCGGGTVNYVNGFNEKDT--L 343 (609)
Q Consensus 273 ~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~L~~~-~~~~--~---l~~~~p~~~ggg~v~~~~~~~~~~~--~ 343 (609)
+.|+...++ .+ ++|++++|.|||+||++. +|.+++. .... . +..+.+...+++.+.. ..+.. .
T Consensus 189 a~~~~~~pl-~~---GaD~vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~----~~~~~~~~ 260 (433)
T PRK08134 189 TTPYLLRPF-EH---GADLVYHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVF----AEESTVAA 260 (433)
T ss_pred cccccCCch-hc---CCCEEEeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccch----hhccchhH
Confidence 988876554 33 899999999999997764 5555553 2210 0 1112222222211100 00000 0
Q ss_pred cccccc--ccccCC-ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-----------
Q 038499 344 YLEDIE--ERESGG-TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS----------- 408 (609)
Q Consensus 344 ~~~~~~--~r~~~g-tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~----------- 408 (609)
++.... .....| ..+. ..+.+. +......+...++..+.+.++.+.|+++|.+. |.-|.-
T Consensus 261 ~~~~~~~~~~~~~G~~ls~---~~A~l~--~~gL~tl~~R~~~~~~nA~~la~~L~~~p~V~~V~yP~l~~~p~~~~~~~ 335 (433)
T PRK08134 261 FLLRARREGLRDFGACLSP---MNAWQL--LQGIETLPLRMERHVANTRKVVAFLASHPAVARVAHPELESHPDHALAKR 335 (433)
T ss_pred HHHHHHHHHHHhcCCCCCH---HHHHHH--hcCCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHH
Confidence 000000 000111 1111 112211 11223456667777888899999999998874 433321
Q ss_pred ---CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHH
Q 038499 409 ---TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQI 482 (609)
Q Consensus 409 ---~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~ 482 (609)
....++++|.+.. +. -....+.+.| +.+.+.+.-|...+ .|.......+..+...
T Consensus 336 ~~~~g~gg~~s~~l~~-~~---------------~~~~~f~~~l-~l~~~~~slG~~~sL~~~p~~~~h~~~~~~~~~-- 396 (433)
T PRK08134 336 LLPRGAGSVFSFDLKG-GR---------------AAGRKFIESL-KLFSHLANVGDARSLVIHPASTTHFRMDAAALA-- 396 (433)
T ss_pred hCCCCCceEEEEEecC-CH---------------HHHHHHHHhC-CcceeccccCCCCceeeCCCccCcccCCHHHHH--
Confidence 1135677887754 11 1234555555 45555555554332 1221111122222111
Q ss_pred HHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 483 RSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 483 ~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
..|+.++.||||++.-..++=++.+.++|+.
T Consensus 397 -------~~Gi~~~liRlsvGlE~~~dli~dl~~Al~~ 427 (433)
T PRK08134 397 -------AAGIGEGTIRLSIGLEDADDLIDDLKRALKA 427 (433)
T ss_pred -------hcCCCCCeEEEEeccCCHHHHHHHHHHHHHh
Confidence 2566789999999975544445555555554
|
|
| >COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.8e-21 Score=206.18 Aligned_cols=335 Identities=17% Similarity=0.168 Sum_probs=226.7
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHH
Q 038499 49 SSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128 (609)
Q Consensus 49 ~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~ 128 (609)
.+.+..+..+..+.+-.....+ | .+..++-.......+....+.+...+..-..+++ ....+..+.+++..
T Consensus 38 ~p~~~v~~~l~~~~~~d~~~~~---~-~p~~~~~~~~~~~~~~~a~~~~~~~~~~nl~d~~-----~~p~a~~~E~~~v~ 108 (460)
T COG0076 38 EPLEEVLDELAELLIKDELYLD---G-HPRANLAGFCPTRVPPVAAELLVSALNKNLGDPD-----ESPAAAELEERVVN 108 (460)
T ss_pred CchhhHHHHHHHHhhccccccc---C-CcceEEEccCCCCCHHHHHHHHHHHHhhcCCCcc-----cChhHHHHHHHHHH
Confidence 3467777777777543221112 1 1223333344445555556666555543223232 23367889999999
Q ss_pred HHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHh-hhcCCCceEEEECCCCccchHHHHHHcCceEEE
Q 038499 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIK-CLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVE 207 (609)
Q Consensus 129 ~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~-~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~ 207 (609)
++++++|++.+....||.+||.+++..+..+... ++.+... ...+++.|+|+++...|+|...+++..|.+++.
T Consensus 109 ~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~-----~~~~~~~~~~~~~~~P~ii~s~~aH~s~~Kaa~~lG~~~~~ 183 (460)
T COG0076 109 MLSDLLGAPEEASGTFTSGGTEANLLALLAARER-----WRKRALAESGKPGGKPNIVCSETAHFSFEKAARYLGLGLRR 183 (460)
T ss_pred HHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHH-----HHHHhhhcccccCCCCeEEecCcchhHHHHHHHHhCCCcee
Confidence 9999999975546789967777766666544321 1111111 234455678999999999999999999999999
Q ss_pred EecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCC--
Q 038499 208 IGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSG-- 284 (609)
Q Consensus 208 v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~-- 284 (609)
++.++ +..+|+++|+++|+++...+ +|+.++++++||.+.|+++|+++|+++++++|||+|.++...++.-...
T Consensus 184 v~~~~~~~~id~~~l~~~i~~~t~~g---~vV~~aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~ 260 (460)
T COG0076 184 VPTVPTDYRIDVDALEEAIDENTIGG---VVVGTAGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRW 260 (460)
T ss_pred EEeccCccccCHHHHHHHHHhhccCc---eEEEEecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchh
Confidence 99988 79999999999999632211 4888899999999999999999999999999999998876665422211
Q ss_pred --CCCCccEEEEcCCCCCCCCCCcEEEEEech-hhc-cCCCC-CCccCCCceEeecccccccccccccccccccCCChhH
Q 038499 285 --QTDGYDAIFLSTHKFLGGPGSPGILLMTKA-LYQ-LGSFP-PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV 359 (609)
Q Consensus 285 --~~~~~D~v~~S~hK~lggp~g~G~L~~~~~-~~~-l~~~~-p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i 359 (609)
...++|.+++++|||+..|.|+|+++++++ .+. ..... ++..|+....+. ..++..-
T Consensus 261 ~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~t------------------i~~sr~~ 322 (460)
T COG0076 261 DFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEALRRILIFADYYLPGGGIPNFT------------------ILGSRPG 322 (460)
T ss_pred hcCCCCceEEEECcccccCCCCCceEEEEECHHHhhhhhhcccccCCCCCcCcee------------------Eeeccch
Confidence 235789999999999999999999999988 321 11122 222221211110 1122211
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEecc
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHS 421 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~ 421 (609)
...+.+-..+......|+..+.++..++++++.+.|.+++.++++.+ +.+++++|...+
T Consensus 323 ~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~---p~l~~V~fr~~~ 381 (460)
T COG0076 323 RQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNE---PELPIVAFRLKD 381 (460)
T ss_pred HHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecC---CccceEEEEcCC
Confidence 12222222222223467888999999999999999999988999986 489999999954
|
|
| >PRK07777 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.7e-22 Score=211.08 Aligned_cols=334 Identities=13% Similarity=0.020 Sum_probs=216.0
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
+..+.+++.+.+.. ... .|....+..++++.+.+++.+.+|.+ ++++|++| +|+++++..++..+
T Consensus 39 ~~~~~~~~~~~~~~----~~~-~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t-~G~~~al~~~~~~~------- 105 (387)
T PRK07777 39 PPEMLEAAQEAIAG----GVN-QYPPGPGIPELRAAIAAQRRRRYGLEYDPDTEVLVT-VGATEAIAAAVLGL------- 105 (387)
T ss_pred CHHHHHHHHHHHhc----CCC-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CCcHHHHHHHHHHh-------
Confidence 44566666555432 111 12222233455555555666666764 33369998 78888888777665
Q ss_pred HHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC---CCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 168 LREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD---GLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~---g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
+++|| .|++..+.|+.+...++..|++++.++.+++ +.+|+++|++++. ++++++++++++|
T Consensus 106 --------~~~gd--~vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~l~~p~N 170 (387)
T PRK07777 106 --------VEPGD--EVLLIEPYYDSYAAVIAMAGAHRVPVPLVPDGRGFALDLDALRAAVT-----PRTRALIVNSPHN 170 (387)
T ss_pred --------cCCCC--EEEEeCCCchhhHHHHHHCCCEEEEeecCCccCCCcCCHHHHHHhcC-----cccEEEEEcCCCC
Confidence 36888 6888888898888888889999999998754 4689999999987 5789999999999
Q ss_pred ccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCC-CCCccEEEEcCCCCCCCCC-CcEEEEEechh
Q 038499 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQ-TDGYDAIFLSTHKFLGGPG-SPGILLMTKAL 315 (609)
Q Consensus 245 ~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~-~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~ 315 (609)
|||.+.+ +++|.++|++|++++|+|++++... ....+.... ..+.++++.|++|.+|.|+ ++|++++++++
T Consensus 171 PtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~l 250 (387)
T PRK07777 171 PTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAKTFNVTGWKIGWACGPAPL 250 (387)
T ss_pred CCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechhhccCcCceeEEEecCHHH
Confidence 9999976 6788999999999999999975311 111122111 1245788999999998553 48999998877
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL 395 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L 395 (609)
++.+.... .......+...+.+. ..++.......+.+++..++.++++.+.|
T Consensus 251 --~~~~~~~~------------------------~~~~~~~~~~~q~~~--~~~l~~~~~~~~~~~~~~~~~~~~l~~~L 302 (387)
T PRK07777 251 --IAAVRAAK------------------------QYLTYVGGAPFQPAV--AHALDHEDAWVAALRDSLQAKRDRLAAGL 302 (387)
T ss_pred --HHHHHHHH------------------------hhcccCCCCHHHHHH--HHHHhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 32221100 000011112222211 11111111234556677788888899999
Q ss_pred CCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCC
Q 038499 396 LPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD 475 (609)
Q Consensus 396 ~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~ 475 (609)
.++ ++++..+ ..+++.+...+ +. ...+..++++.|.+++||.+.+|..|..+...
T Consensus 303 ~~~-~~~~~~~----~g~~~~~~~~~-~~-------------~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~------ 357 (387)
T PRK07777 303 AEA-GFEVHDS----AGTYFLCADPR-PL-------------GYDDGTEFCRALPERVGVAAIPMSVFYDPADA------ 357 (387)
T ss_pred HhC-CCCccCC----CcceEEEeccc-cc-------------CCCCHHHHHHHHHHhCCEEEeCchHhCCCCcC------
Confidence 876 6666544 23445443322 10 00256788888876689999998766421000
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++||+++. ++++++..++.|+.++.+
T Consensus 358 ------------------~~~~~Ri~~~~--~~~~l~~~l~~l~~~~~~ 386 (387)
T PRK07777 358 ------------------WNHLVRFAFCK--RDDTLDEAIRRLRALRGR 386 (387)
T ss_pred ------------------CCCeEEEEecC--CHHHHHHHHHHHHHHhcC
Confidence 24799999973 788999999988876643
|
|
| >PRK07309 aromatic amino acid aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.2e-21 Score=206.89 Aligned_cols=344 Identities=13% Similarity=0.069 Sum_probs=218.3
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~ 154 (609)
++.+..+... ..++.+.+++.+.+...+ . .|....+..++.+.+.+.+...+|. .++++|++| +|+++++.
T Consensus 32 ~i~l~~~~~~~~~~~~~~~~~~~~~~~~~----~-~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~it-~G~~~al~ 105 (391)
T PRK07309 32 ILKLTLGEPDFTTPDHVKEAAKRAIDANQ----S-HYTGMAGLLELRQAAADFVKEKYNLDYAPENEILVT-IGATEALS 105 (391)
T ss_pred eEEcCCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CChHHHHH
Confidence 4444433322 235567777776654211 0 0111112234444444444444454 233479998 78888999
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC-CCCCHHHHHHHHhhhccCCC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD-GLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-g~ld~e~L~~al~~~~~~~~ 233 (609)
.++..+ +++|| .|++..+.|+.+...++..|++++.++.+.+ +.+|+++|++++++. .++
T Consensus 106 ~~~~~~---------------~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~~~--~~~ 166 (391)
T PRK07309 106 ASLTAI---------------LEPGD--KVLLPAPAYPGYEPIVNLVGAEIVEIDTTENDFVLTPEMLEKAILEQ--GDK 166 (391)
T ss_pred HHHHHh---------------cCCCC--EEEEeCCCCcchHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhhcc--CCC
Confidence 888776 37888 6899999999988888889999999998764 478999999998732 136
Q ss_pred ceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEEcCCCCCCCCC-C
Q 038499 234 PILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFLSTHKFLGGPG-S 305 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~S~hK~lggp~-g 305 (609)
++++++++|+||||.+.+ +++|+++|++||+++|+|++++... ...++.... ....+++.|++|.+|.|+ .
T Consensus 167 ~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~-~~~~i~~~S~SK~~g~~GlR 245 (391)
T PRK07309 167 LKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYL-PDQTILINGLSKSHAMTGWR 245 (391)
T ss_pred eEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhc-cCCEEEEecChhhccCccce
Confidence 899999999999999977 7788999999999999999976422 111222111 123477889999998553 4
Q ss_pred cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh-cCHHHHHHHH
Q 038499 306 PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY-IGHEVIKKQE 384 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~-~g~~~i~~~~ 384 (609)
+|+++.++++ ++.+... ......+++.+.+.+ +..+ +.+. ......+++.
T Consensus 246 vG~~v~~~~~--~~~~~~~------------------------~~~~~~~~~~~~q~~--~~~~-l~~~~~~~~~~~~~~ 296 (391)
T PRK07309 246 IGLIFAPAEF--TAQLIKS------------------------HQYLVTAATTMAQFA--AVEA-LTNGKDDALPMKKEY 296 (391)
T ss_pred eEEEEeCHHH--HHHHHHH------------------------HhhcccCCChHHHHH--HHHH-HhCChhHHHHHHHHH
Confidence 9999999888 3332110 000001222333321 2222 2221 1123445566
Q ss_pred HHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 385 ETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 385 ~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
++.++++.+.|+++ ++.+..+ ..+++.|...+ .. ...+..++++.|.++.||.+.+|..+.
T Consensus 297 ~~~~~~~~~~l~~~-~~~~~~p----~gg~~~~~~l~-~~-------------~~~~~~~~~~~l~~~~gv~v~pg~~f~ 357 (391)
T PRK07309 297 IKRRDYIIEKMTDL-GFKIIKP----DGAFYIFAKIP-AG-------------YNQDSFKFLQDFARKKAVAFIPGAAFG 357 (391)
T ss_pred HHHHHHHHHHHHHC-CCeecCC----CeeEEEEEECC-CC-------------CCCCHHHHHHHHHHhCCEEEeCchhhC
Confidence 66778888888876 6776654 23454444333 11 012356777766566799999887553
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.. .++++||+++. +.++++..+++|+.++++
T Consensus 358 ~~---------------------------~~~~iRi~~~~--~~~~l~~~i~~l~~~~~~ 388 (391)
T PRK07309 358 PY---------------------------GEGYVRLSYAA--SMETIKEAMKRLKEYMEE 388 (391)
T ss_pred CC---------------------------CCCEEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 11 24899999984 678999999999888754
|
|
| >PLN00143 tyrosine/nicotianamine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.1e-21 Score=205.80 Aligned_cols=364 Identities=13% Similarity=0.035 Sum_probs=224.6
Q ss_pred HHHHHHHHHhhccCCCccccCCCCCCceEEecCCCC-----CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHH
Q 038499 51 SEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTAS-----GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHE 125 (609)
Q Consensus 51 ~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~-----g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e 125 (609)
....++.+++.+.... .++++-|.-+.. -+.|+.+.+++.+.+... ....|....+ ..+
T Consensus 15 ~~~~~~~~~~~~~~~~--------~~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~----~~~~Y~~~~G----~~~ 78 (409)
T PLN00143 15 IDDAVKFLKENFNEDD--------HRLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSA----KFNSYAPTGG----ILP 78 (409)
T ss_pred HHHHHHHHHHhcccCC--------CCceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCc----CCCCCCCCCC----CHH
Confidence 4555777777552111 124555554443 367888888888766531 0000111111 334
Q ss_pred HHHHHHHHh----C--CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH
Q 038499 126 ASNYIKKCL----G--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR 199 (609)
Q Consensus 126 ~r~~ia~~~----g--~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (609)
+|+.+++++ | .+++ +|++| +|+++++..++.++ +++|| .|++..+.|+.+...++
T Consensus 79 lr~aia~~~~~~~g~~~~~~-~I~it-~G~~~al~~~~~~l---------------~~~gd--~v~v~~P~y~~~~~~~~ 139 (409)
T PLN00143 79 ARRAIADYLSNDLPYQLSPD-DVYLT-LGCKHAAEIIIKVL---------------ARPEA--NILLPRPGFPDVETYAI 139 (409)
T ss_pred HHHHHHHHHHhhcCCCCCHh-hEEEe-cChHHHHHHHHHHH---------------cCCCC--EEEEcCCCCcCHHHHHH
Confidence 566666665 3 4555 89998 89999999998877 37888 69999999999888888
Q ss_pred HcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccC
Q 038499 200 QSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 200 ~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~ 274 (609)
..|++++.+++++ +..+|+++|+++++ .+++++++++|+||||.+.+ +++|+++|++|++++|+|+++..
T Consensus 140 ~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~~~~~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~ 214 (409)
T PLN00143 140 FHHLEIRHFDLLPEKGWEVDLDAVEAIAD-----ENTIAMVIINPGNPCGSVYSYEHLNKIAETARKLGILVIADEVYGH 214 (409)
T ss_pred HcCCEEEEEeccCCCCCcCCHHHHHHhcc-----cCCEEEEEECCCCCCCCccCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence 9999999999853 45789999999887 57899999999999999988 56688889999999999999763
Q ss_pred Ccc---c-ccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEe-c-hhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 275 PYV---E-IDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMT-K-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 275 ~~~---~-id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~-~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
-.. + ..+........-+++.|++|.++.|+ .+|+++++ + .+ ++...-. ..+..
T Consensus 215 l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGlRvG~~v~~~p~~~--~~~~~~~------------------~~~~~ 274 (409)
T PLN00143 215 IVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGWGLGWLVTCDPSGL--LQICEIA------------------DSIKK 274 (409)
T ss_pred cccCCCCCcchhhhcccCcEEEEccchhhcCCCccceEEEEeeCchhh--hhhHHHH------------------HHHHH
Confidence 211 1 11111111122467789999987664 59999984 3 22 1110000 00000
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCC
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKE--YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTIN 425 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~--~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~ 425 (609)
........+.+.+. ++..+ +.+ ...++...++.++.++++.+.|.++++...... +..+++.|.-.+ ...
T Consensus 275 -~~~~~~~~~~~~q~--a~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~---p~gg~f~w~~l~-~~~ 346 (409)
T PLN00143 275 -ALNPAPFPPTFIQA--AIPEI-LEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQK---AEGAFFALVKLN-LLL 346 (409)
T ss_pred -HHhccCCCCchHHH--HHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCC---CCeeEEEEEecc-hhh
Confidence 00000111222222 22222 221 123455666677777788888887754332221 234555555443 100
Q ss_pred CcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC
Q 038499 426 SSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY 505 (609)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~ 505 (609)
.....+..+++..|..+.||.+++|..|. .++++||+++
T Consensus 347 ----------~~~~~~~~~~~~~ll~~~gV~v~pg~~f~-----------------------------~~~~iRi~~~-- 385 (409)
T PLN00143 347 ----------LEDIEDDMEFCLKLAKEESLIILPGVTVG-----------------------------LKNWLRITFA-- 385 (409)
T ss_pred ----------cCCCCCHHHHHHHHHHhCCEEEeCccccC-----------------------------CCCeEEEEEc--
Confidence 00001344555555456799999987652 1489999998
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 038499 506 MSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 506 ~t~eeid~ll~al~~v~~ 523 (609)
.++++++..++.|+.+++
T Consensus 386 ~~~~~l~~al~rl~~~l~ 403 (409)
T PLN00143 386 VEQSSLEDGLGRLKSFCG 403 (409)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 468889999999888775
|
|
| >PRK07392 threonine-phosphate decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.1e-21 Score=206.09 Aligned_cols=326 Identities=14% Similarity=-0.004 Sum_probs=215.1
Q ss_pred ceEEecCCCC-CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTAS-GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~-g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
+++.|+.+.. -+.|+.+.+++.+.+......+. .. ..++|+.|+++++.+++ +|++| +|++++|..
T Consensus 23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~~~~Y~~----------~~-~~~Lr~aia~~~~v~~~-~I~it-~G~~~~i~~ 89 (360)
T PRK07392 23 AILDFSASINPLGPPESVIAAIQSALSALRHYPD----------PD-YRELRLALAQHHQLPPE-WILPG-NGAAELLTW 89 (360)
T ss_pred cEEEeCCcCCCCCCCHHHHHHHHHHHHHhhcCCC----------cC-HHHHHHHHHHHhCcChh-hEEEC-CCHHHHHHH
Confidence 4567775544 34556777877765542111111 11 34788999999999887 89988 899999998
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCC-----CCHHHHHHHHhhhcc
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGL-----LDIEALRSKLELYKD 230 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~-----ld~e~L~~al~~~~~ 230 (609)
++..+ .+|| .|++..+.|+.+...++..|++++.++++.++. .+++++++..
T Consensus 90 ~~~~l----------------~~g~--~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~----- 146 (360)
T PRK07392 90 AGREL----------------AQLR--AVYLITPAFGDYRRALRAFGATVKELPLPLDQPSPGLTLRLQTLPPQL----- 146 (360)
T ss_pred HHHHh----------------CCCC--eEEEECCCcHHHHHHHHHcCCeEEEEecccccCCcccccCHHHHHHhc-----
Confidence 87765 3566 688899999999999999999999999976443 3566655432
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc---ccC-CCCCCCCccEEEEcCCCCCCCC-CC
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE---IDV-RSGQTDGYDAIFLSTHKFLGGP-GS 305 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~---id~-~~~~~~~~D~v~~S~hK~lggp-~g 305 (609)
.+++++++++++||||.+.+.++|.++++++++ +|+|+++..-... ..+ ........-+++.|++|.+|-| ..
T Consensus 147 -~~~~~~~l~nP~NPTG~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~GlR 224 (360)
T PRK07392 147 -TPNDGLLLNNPHNPTGKLWSREAILPLLEQFAL-VVVDEAFMDFLPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGLR 224 (360)
T ss_pred -cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCE-EEEECchhhhccCccccchHHHhhcCCCEEEEEechhhhcCCchh
Confidence 367899999999999999999999999999985 6669996532110 110 0011112247778999999844 46
Q ss_pred cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 038499 306 PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (609)
+|++++++++ ++.+... +...+.+.+.+.+ +..++++....+.+.++.+
T Consensus 225 iG~~v~~~~~--~~~~~~~--------------------------~~~~~~s~~~q~~---~~~~l~~~~~~~~~~~~~~ 273 (360)
T PRK07392 225 LGYAIAHPDR--LQRWQQW--------------------------RDPWPVNGLAAAA---AIAALADRDFQQQTWAWLP 273 (360)
T ss_pred eeeeeCCHHH--HHHHHhh--------------------------CCCCCCCHHHHHH---HHHHhccHHHHHHHHHHHH
Confidence 9999998877 3332111 0001222233221 1112222222344455667
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
+.++++.+.|+.++++.+..+ . +++.+.-.+ .+..++++.|.++.||.+++|..+.+
T Consensus 274 ~~r~~l~~~L~~~~~~~~~~~----~-~~fl~~~~~------------------~~~~~l~~~ll~~~gv~v~pg~~f~~ 330 (360)
T PRK07392 274 PAREALFQGLASLPGLTPLPS----A-ANFLLVQSQ------------------GSALQLQEKLLQQHRILIRDCLSFPE 330 (360)
T ss_pred HHHHHHHHHHHhCCCcEECCC----C-CCEEEEEcC------------------CCHHHHHHHHHhhCCEEEEeCCCCCC
Confidence 778888899988888877532 2 344443332 13567777765667999998876531
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
. .++++||+++ +.++.+++.++|+.+.++
T Consensus 331 ~---------------------------~~~~iRi~~~---~~~~~~~l~~al~~~~~~ 359 (360)
T PRK07392 331 L---------------------------GDRYFRVAVR---TEAENQRLLEALAAILAN 359 (360)
T ss_pred C---------------------------CCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 1 2589999997 677788999999887653
|
|
| >TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=206.82 Aligned_cols=340 Identities=17% Similarity=0.077 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL 202 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (609)
..++++.+++++|.+. .++++ +| ++++..++.+++ +++|| .|++++++|++...++...|
T Consensus 31 ~~~le~~la~~~g~~~--~v~~~-sg-t~al~~~l~al~--------------~~~Gd--~Viv~~~~~~~~~~~~~~~G 90 (380)
T TIGR03588 31 VPAFEEALAEYVGAKY--AVAFN-SA-TSALHIACLALG--------------VGPGD--RVWTTPITFVATANCALYCG 90 (380)
T ss_pred HHHHHHHHHHHHCCCe--EEEEc-CH-HHHHHHHHHHcC--------------CCCCC--EEEeCCcchHHHHHHHHHcC
Confidence 5778999999999852 45544 55 557888888775 47898 69999999999988888999
Q ss_pred ceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccC
Q 038499 203 AEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDV 281 (609)
Q Consensus 203 ~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~ 281 (609)
++++.+++++ ++.+|+++|++++++. ..+++++++++ |++|...|+++|.++|++||+++|+|++|+.|.. ++.
T Consensus 91 ~~~~~~~~~~~~~~~d~~~l~~~i~~~-~~~~t~~v~~~---~~~G~~~~~~~i~~l~~~~~~~lI~D~a~a~g~~-~~~ 165 (380)
T TIGR03588 91 AKVDFVDIDPDTGNIDEDALEKKLAAA-KGKLPKAIVPV---DFAGKSVDMQAIAALAKKHGLKIIEDASHALGAE-YGG 165 (380)
T ss_pred CEEEEEecCCCcCCcCHHHHHHHhhcc-cCCCceEEEEe---CCCCccCCHHHHHHHHHHcCCEEEEECCCcccCc-cCC
Confidence 9999999975 6789999999999732 11267877754 4689999999999999999999999999998865 444
Q ss_pred CCCCC-CCccEEEEcCC--CCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccc-ccccccccccccccCCCh
Q 038499 282 RSGQT-DGYDAIFLSTH--KFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNE-KDTLYLEDIEERESGGTP 357 (609)
Q Consensus 282 ~~~~~-~~~D~v~~S~h--K~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~-~~~~~~~~~~~r~~~gtp 357 (609)
.+... ...|+.++|+| |+++++.| |+++.+++.. .+.+++...+|........... ....++. ....|..
T Consensus 166 ~~~g~~~~~d~~~~S~~~~K~~~~~~G-G~v~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~g~n 239 (380)
T TIGR03588 166 KPVGNCRYADATVFSFHPVKIITTAEG-GAVTTNDEEL-AERMRLLRSHGITKDPLLFEKQDEGPWYYE----QQELGFN 239 (380)
T ss_pred EeCCCccccceEEEecCCCCcccccCc-eEEEECCHHH-HHHHHHHHHCCCCCCcccccccccCcceee----eeccccc
Confidence 44311 12399999988 99986664 7777654431 2223222222211000000000 0000110 0011111
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEe-ccCCCCCcCCCCCCCCC
Q 038499 358 QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNI-HSSTINSSLGENTKTET 436 (609)
Q Consensus 358 ~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~-~~~~~~~~~~~~~~~~~ 436 (609)
.-+.-+.+++.+. +....+.+.++.+++++++.+.|+.+|++.++.+..........+.+ .. .
T Consensus 240 ~~m~~l~aa~g~~--qL~~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~-~------------- 303 (380)
T TIGR03588 240 YRMTDIQAALGLS--QLKKLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLD-Q------------- 303 (380)
T ss_pred cCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEEC-C-------------
Confidence 0011112222211 11236788889999999999999999888765442111122222222 22 1
Q ss_pred CCCCChHHHHHHHhhhcCcEeccCcccCC--hhhhhh-cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHH
Q 038499 437 DKPLHGPFVATLLNDLFGIQARGGCACAG--PYGHHL-LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513 (609)
Q Consensus 437 ~~~l~~~~v~~~L~~~~GI~v~~G~~ca~--p~~~~l-l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ 513 (609)
+...+.+.+.+.|.+ .||.++..+.+-. |+.... ...+.+.++.+ ....++++++..+|++|+++
T Consensus 304 ~~~~~r~~l~~~L~~-~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~-----------~~~~l~lP~~~~l~~~dv~~ 371 (380)
T TIGR03588 304 EFGCTRKEVFEALRA-AGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENF-----------YLAEISLPLHPALTLEQQQR 371 (380)
T ss_pred cCCCCHHHHHHHHHH-CCCCcccCCcccccChhhhccCCcCCCcHHHHH-----------HhceEEcCCCCCCCHHHHHH
Confidence 011467899999965 6999987654321 211110 01111223322 24789999999999999999
Q ss_pred HHHHHHHH
Q 038499 514 TLEALEFI 521 (609)
Q Consensus 514 ll~al~~v 521 (609)
++++|+++
T Consensus 372 i~~~l~~~ 379 (380)
T TIGR03588 372 VVETLRKV 379 (380)
T ss_pred HHHHHHHh
Confidence 99999876
|
This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species. |
| >TIGR03538 DapC_gpp succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-21 Score=209.11 Aligned_cols=342 Identities=14% Similarity=0.058 Sum_probs=213.9
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC----CCCCCcEEEeCChHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG----GGQEDAMIFCGSGTTA 151 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g----~~~~~~vift~sGtta 151 (609)
+.+.|+.+... ..++.+.+++.+.+......+. ..+..++++.+.+++.+.+| .+++++|++| +|+++
T Consensus 29 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~Y~~------~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it-~Ga~~ 101 (393)
T TIGR03538 29 PPIALSIGEPKHPTPAFVLEALRENLHGLSTYPT------TKGLPELRQAIARWLERRFDLPTGVDPERHVLPV-NGTRE 101 (393)
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHhhccCCCCC------CCCCHHHHHHHHHHHHHhhCCcccCCCCceEEEC-CCcHH
Confidence 45566554433 3466788888776532211111 11123333334444434334 4443368887 89999
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhhc
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELYK 229 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~~ 229 (609)
++..++..+ +++||...|+++.+.|+.+...++..|++++.++++++ ..+|++++++++.
T Consensus 102 al~~~~~~l---------------~~~gd~~~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~--- 163 (393)
T TIGR03538 102 ALFAFAQAV---------------INPGQAPLVVMPNPFYQIYEGAALLAGAEPYFLNCTAENGFLPDFDAVPESVW--- 163 (393)
T ss_pred HHHHHHHHH---------------cCCCCcceEEecCCCCcchHHHHHhcCCeEEEeeccccCCCCCCHHHHHHHHh---
Confidence 999998876 37888545899999998888888889999999998643 4689999999887
Q ss_pred cCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc-----cccC----CCCC--CCCccEEEEc
Q 038499 230 DAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-----EIDV----RSGQ--TDGYDAIFLS 295 (609)
Q Consensus 230 ~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~-----~id~----~~~~--~~~~D~v~~S 295 (609)
.+++++++++++||||.+.+ +++|+++|++||+++|+|+++..... +..+ .... ....-+++.|
T Consensus 164 --~~~k~i~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S 241 (393)
T TIGR03538 164 --RRCQLLFVCSPGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHS 241 (393)
T ss_pred --hcceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEec
Confidence 47899999999999999988 57788899999999999999753211 1110 0010 0012377889
Q ss_pred CCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh
Q 038499 296 THKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY 374 (609)
Q Consensus 296 ~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~ 374 (609)
++|.++.|+ .+|+++.++++ ++.+... ......+.+.+.+.+. +..+ ...
T Consensus 242 ~SK~~~~~GlRvG~~i~~~~l--~~~~~~~------------------------~~~~~~~~~~~~q~~~--~~~l-~~~ 292 (393)
T TIGR03538 242 LSKRSNLPGLRSGFVAGDAEI--LKAFLRY------------------------RTYHGCAMPIPTQLAS--IAAW-NDE 292 (393)
T ss_pred chhhcCCcccceEEEecCHHH--HHHHHHH------------------------HHhhccCcCHHHHHHH--HHHh-cCh
Confidence 999766553 59999998877 3322110 0000112222333221 1222 122
Q ss_pred cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcC
Q 038499 375 IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFG 454 (609)
Q Consensus 375 ~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~G 454 (609)
...+..+++.++.++.+.+.|... +.+.. +..+++.|.-.+ .+...+++.|.++.|
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~----p~gg~f~~~~~~------------------~~~~~~~~~l~~~~g 348 (393)
T TIGR03538 293 QHVRENRALYREKFAAVLEILGQV--LDLEL----PDAGFYLWPKVP------------------GDDEAFARALYEEEN 348 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CcccC----CCeeEEEEEECC------------------CCHHHHHHHHHHHCC
Confidence 234555666677777777777653 22222 244555555443 135677877766679
Q ss_pred cEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 455 IQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 455 I~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
|.+.+|..|....... . -.++++||++.. ++++++..+++|+..
T Consensus 349 V~v~pg~~f~~~~~~~--~-------------------~~~~~~Ris~~~--~~~~l~~~l~~l~~~ 392 (393)
T TIGR03538 349 VTVLPGRFLAREAEGV--N-------------------PGEGRVRIALVA--PLEECVEAAERIRSF 392 (393)
T ss_pred EEEeCCccccccccCC--C-------------------CCCCEEEEEecC--CHHHHHHHHHHHHHh
Confidence 9999998764210000 0 024799999974 688888888888753
|
This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK06107 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.3e-21 Score=208.75 Aligned_cols=337 Identities=15% Similarity=0.011 Sum_probs=217.3
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
++.+.+++.+.+... . . .|....+..++++.+.+++++.+|. .++ +|++| +|++.++..++..+
T Consensus 48 ~~~~~~~~~~~~~~~---~-~-~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~-~i~~t-~G~~~al~~~~~~~------- 113 (402)
T PRK06107 48 PDHIKQAAVAAIERG---E-T-KYTLVNGTPALRKAIIAKLERRNGLHYADN-EITVG-GGAKQAIFLALMAT------- 113 (402)
T ss_pred CHHHHHHHHHHHHcC---C-C-CCCCCCCCHHHHHHHHHHHHHhcCCCCChh-hEEEe-CCHHHHHHHHHHHh-------
Confidence 566777777665421 1 1 1222223456677777788877776 344 89998 88888999887655
Q ss_pred HHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccCc
Q 038499 168 LREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~ 245 (609)
+++|| .|+++++.|+.+.......+++++.++.+. ++.+|+++|++++. ++++++++++++||
T Consensus 114 --------~~~gd--~vl~~~p~y~~y~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~-----~~~~~v~l~~p~NP 178 (402)
T PRK06107 114 --------LEAGD--EVIIPAPYWVSYPDMVLANDGTPVIVACPEEQGFKLTPEALEAAIT-----PRTRWLILNAPSNP 178 (402)
T ss_pred --------cCCCC--EEEEecCCCcCHHHHHHHcCCEEEEecCCcccCCCCCHHHHHhhcC-----cCceEEEEECCCCC
Confidence 47888 799999888887777777888888888753 35689999999887 57899999999999
Q ss_pred cccccCH---HHHHHHHHHh-CCeEEEeccccCCc----ccccCCCCCC--CCccEEEEcCCCCCCCCC-CcEEEEEech
Q 038499 246 TGIYSDT---RSIARLLHQY-GGFACFDFAASGPY----VEIDVRSGQT--DGYDAIFLSTHKFLGGPG-SPGILLMTKA 314 (609)
Q Consensus 246 TG~~~dl---~~I~~la~~~-g~~vivD~A~~~~~----~~id~~~~~~--~~~D~v~~S~hK~lggp~-g~G~L~~~~~ 314 (609)
||.+.+. ++|+++|++| |+++|+|++++.-. ....+..... .+..+++.|++|.+|.|+ .+|+++++++
T Consensus 179 tG~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGlRiG~~~~~~~ 258 (402)
T PRK06107 179 TGAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGWRIGYAAGPAD 258 (402)
T ss_pred CCcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCcccceeeeecCHH
Confidence 9999875 5678889998 99999999875211 0111111101 123567779999997554 4899999988
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHEVIKKQEETYIERALE 393 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~~i~~~~~~l~~~~~~ 393 (609)
+ ++.+... ......+...+.+.+ +..++.+ ....+...+..++.++.+.+
T Consensus 259 ~--~~~~~~~------------------------~~~~~~~~s~~~q~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 309 (402)
T PRK06107 259 L--IAAINKL------------------------QSQSSSCPSSISQAA---AAAALNGDQSFVTESVAVYKQRRDYALA 309 (402)
T ss_pred H--HHHHHHH------------------------HHhcccCCChHHHHH---HHHHhcCChHHHHHHHHHHHHHHHHHHH
Confidence 7 3333211 000111223333322 1222211 11234556666777888888
Q ss_pred HhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC-CCChHHHHHHHhhhcCcEeccCcccCChhhhhhc
Q 038499 394 RLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK-PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLL 472 (609)
Q Consensus 394 ~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~-~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll 472 (609)
.|++++++.+..+ ..+.+.|...+ ...+. ....+. ..+..+++..|.++.||.+++|..|.
T Consensus 310 ~L~~~~g~~~~~p----~gg~~~~~~~~-~~~~~-----~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg-------- 371 (402)
T PRK06107 310 LLNAIPGLSCLVP----DGAFYLYVNCA-GLIGK-----TTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYG-------- 371 (402)
T ss_pred HHhcCCCCcccCC----CcceEEeeecc-ccccc-----ccccccCCCCHHHHHHHHHHhCCEEEeCccccC--------
Confidence 8988778777654 33555554332 10000 000000 11345666666666799999887653
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 473 DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 473 ~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++||+++ .++++++..++.|.++++++
T Consensus 372 ---------------------~~~~iRis~~--~~~e~l~~~l~~l~~~l~~~ 401 (402)
T PRK06107 372 ---------------------LSPYFRLSIA--TSLETLEEACARIERAVAAL 401 (402)
T ss_pred ---------------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHHhc
Confidence 1479999998 47899999999998887654
|
|
| >PLN02822 serine palmitoyltransferase | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-21 Score=211.44 Aligned_cols=339 Identities=16% Similarity=0.105 Sum_probs=227.3
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
.++.|.+++.+.+..+ +. +...+...+.+.+...++++.|++++|.+ +.|+|+ +|.++ +..++.++
T Consensus 124 ~~~~i~ea~~~al~~~-G~-g~~g~r~~yg~~~~~~~Lee~La~~~~~~--~~i~~s-~G~~a-~~sai~a~-------- 189 (481)
T PLN02822 124 GNEKIKESCTSALEKY-GV-GSCGPRGFYGTIDVHLDCETKIAKFLGTP--DSILYS-YGLST-IFSVIPAF-------- 189 (481)
T ss_pred CCHHHHHHHHHHHHHh-CC-CCcccCccccCHHHHHHHHHHHHHHhCCC--CEEEEC-CHHHH-HHHHHHHh--------
Confidence 4678999998888753 22 11111122346778999999999999975 378888 66664 45555555
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC----CCc-eEEEEeccc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA----KRP-ILGSFSACS 243 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~----~~~-~lv~~s~~s 243 (609)
.++|| +|++....|.+.....+..+++++.++.+ |.++++..+++.... +++ ++++++.++
T Consensus 190 -------~~~gd--~Ii~d~~~H~s~~~~~~ls~~~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~ 255 (481)
T PLN02822 190 -------CKKGD--IIVADEGVHWGIQNGLYLSRSTIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEAIY 255 (481)
T ss_pred -------CCCCC--EEEEeCCccHHHHHHHHHcCCeEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEecCC
Confidence 37888 79999999999888888889999999876 566666666532111 235 699999999
Q ss_pred CccccccCHHHHHHHHHHhCCeEEEeccccCCccc---------ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 244 NVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE---------IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 244 n~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~---------id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
++||.+.|+++|.++|++||+++++|++|+.+... .++. ...+|+++.|++|.+| +.| |+++++++
T Consensus 256 ~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~---~~~~dii~~s~sKalg-~~G-G~i~g~~~ 330 (481)
T PLN02822 256 QNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVP---IEKIDIITAAMGHALA-TEG-GFCTGSAR 330 (481)
T ss_pred CCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCC---CCCCeEEEecchhhhh-hCC-eEEEcCHH
Confidence 99999999999999999999999999999855422 1111 1257999999999998 444 89999888
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM-IRAALAFWVKEYIGHEVIKKQEETYIERALE 393 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~ 393 (609)
+ ++.+... +.+. .+....|+..+. ..+++... +. .+.+.++.+++++++.+
T Consensus 331 i--i~~~~~~--~~~~--------------------~fsa~lPp~~~~Aa~~aL~~l--~~--~~~~~~~l~~~~~~l~~ 382 (481)
T PLN02822 331 V--VDHQRLS--SSGY--------------------VFSASLPPYLASAAITAIDVL--ED--NPSVLAKLKENIALLHK 382 (481)
T ss_pred H--HHHHHhc--CCce--------------------eeccccCHHHHHHHHHHHHHH--Hh--CHHHHHHHHHHHHHHHH
Confidence 7 3332211 0000 111222333332 22333332 21 25677889999999999
Q ss_pred HhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcC
Q 038499 394 RLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 394 ~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~ 473 (609)
.|++++|+.+..+ ...+++.+.+.. ..... .+.-.....+++.|.++.||.+.++..... +
T Consensus 383 ~L~~~~g~~~~~~---~~spi~~l~l~~-~~~~~--------~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~-------~ 443 (481)
T PLN02822 383 GLSDIPGLSIGSN---TLSPIVFLHLEK-STGSA--------KEDLSLLEHIADRMLKEDSVLVVVSKRSTL-------D 443 (481)
T ss_pred HHHhcCCcccCCC---CCCCEEEEEeCC-Ccccc--------cchHHHHHHHHHHHHhcCCEEEEeeCCCCc-------C
Confidence 9998878877654 356777776643 10000 000001356788877557999986532110 0
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
. +..+.++|++++..+|++||++++++|++++..
T Consensus 444 ~-----------------~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~~ 477 (481)
T PLN02822 444 K-----------------CRLPVGIRLFVSAGHTESDILKASESLKRVAAS 477 (481)
T ss_pred C-----------------CCCCCcEEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 0 001357999999999999999999999988765
|
|
| >PRK03321 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-22 Score=209.78 Aligned_cols=320 Identities=14% Similarity=0.056 Sum_probs=211.1
Q ss_pred ceEEecCCCCCC-ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASGR-SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g~-~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
..+.|+.+.... .++.+.+++.+.+......+. ....++|+.+++++|++++ +|+++ +|+++++..
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~y~~-----------~g~~~lr~~ia~~~~~~~~-~I~~~-~G~~~~l~~ 89 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAGVNRYPD-----------MGAVELRAALAEHLGVPPE-HVAVG-CGSVALCQQ 89 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHhcCcCCC-----------CcHHHHHHHHHHHhCcCHH-HEEEC-CCHHHHHHH
Confidence 456777664433 455788888766542211111 1257899999999998876 89987 899998888
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++..+ +++|| .|+++.+.|..+...++..|++++.++.++++.+|+++++++++ ++++
T Consensus 90 ~~~~~---------------~~~gd--~Vli~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~l~~~~~-----~~~~ 147 (352)
T PRK03321 90 LVQAT---------------AGPGD--EVIFAWRSFEAYPILVQVAGATPVQVPLTPDHTHDLDAMAAAIT-----DRTR 147 (352)
T ss_pred HHHHh---------------cCCCC--EEEeCCCCHHHHHHHHHHcCCEEEEccCCCCCCCCHHHHHHhhc-----cCCC
Confidence 87765 47888 68888887777766778889999999998678899999999987 5789
Q ss_pred EEEEecccCccccccCHHHHHHHHHH--hCCeEEEeccccCCcc----cccCCCCCCCCccEEEEcCCCCCCCCC-CcEE
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYV----EIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGI 308 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~--~g~~vivD~A~~~~~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~ 308 (609)
++++++++||||.+.|.++|.++|+. +|+++++|+++..... +..+.......--+++.|++|.+|.|+ .+|+
T Consensus 148 ~v~l~~p~NPtG~~~~~~~l~~l~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~GlRiG~ 227 (352)
T PRK03321 148 LIFVCNPNNPTGTVVTPAELARFLDAVPADVLVVLDEAYVEYVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGLRVGY 227 (352)
T ss_pred EEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEechHHHhccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHHhhhh
Confidence 99999999999999999999999997 5999999999753211 011111101122356679999998443 5899
Q ss_pred EEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 038499 309 LLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYI 388 (609)
Q Consensus 309 L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (609)
+++++++ ++.+.... ...+.+.+.+.+ +++.+.......+. .++..+.+
T Consensus 228 ~v~~~~~--~~~~~~~~--------------------------~~~~~s~~~q~~--a~~~l~~~~~~~~~-~~~~~~~r 276 (352)
T PRK03321 228 AVGHPEV--IAALRKVA--------------------------VPFSVNSLAQAA--AIASLAAEDELLER-VDAVVAER 276 (352)
T ss_pred hcCCHHH--HHHHHHhc--------------------------CCCCCCHHHHHH--HHHHhcCHHHHHHH-HHHHHHHH
Confidence 9998877 33322110 001122222221 11111111111222 23333445
Q ss_pred HHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh
Q 038499 389 ERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG 468 (609)
Q Consensus 389 ~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~ 468 (609)
+++.+.|... ++.+..+ ...++++.+ + .+...+.+.|.+ .||.+++ |.
T Consensus 277 ~~~~~~L~~~-~~~~~~~----~g~~i~i~l-~------------------~~~~~~~~~l~~-~gI~v~~---~~---- 324 (352)
T PRK03321 277 DRVRAALRAA-GWTVPPS----QANFVWLPL-G------------------ERTADFAAAAAE-AGVVVRP---FA---- 324 (352)
T ss_pred HHHHHHHHHC-CCccCCC----CCCEEEEeC-C------------------CCHHHHHHHHHH-CCEEEEc---cC----
Confidence 6677777765 5554322 233333332 3 135678888854 7999983 21
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
+.++||+++ +.+++++++++|+.+.+
T Consensus 325 --------------------------~~~iRi~~~---~~~~~~~~~~al~~~~~ 350 (352)
T PRK03321 325 --------------------------GEGVRVTIG---APEENDAFLRAARAWRA 350 (352)
T ss_pred --------------------------CCcEEEeeC---CHHHHHHHHHHHHHHhc
Confidence 246999986 99999999999998754
|
|
| >PRK06358 threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4e-21 Score=203.31 Aligned_cols=309 Identities=17% Similarity=0.064 Sum_probs=207.6
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHH
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILR 169 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (609)
|+.+.+++.+.+..... | .. . ...++|+.++++++.+++ +|++| +|+++++..++.++
T Consensus 34 p~~~~~a~~~~~~~~~~------Y-~~---~-~~~~lr~~ia~~~~~~~~-~i~it-~Ga~~~l~~~~~~~--------- 91 (354)
T PRK06358 34 PESLKQAITENLDKLVE------Y-PD---P-DYLELRKRIASFEQLDLE-NVILG-NGATELIFNIVKVT--------- 91 (354)
T ss_pred CHHHHHHHHHHHHhhhc------C-CC---c-cHHHHHHHHHHHhCCChh-hEEEC-CCHHHHHHHHHHHh---------
Confidence 56777887765532211 1 11 1 146899999999999887 89998 89999999887765
Q ss_pred HHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhhccCCCceEEEEecccCccc
Q 038499 170 EKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELYKDAKRPILGSFSACSNVTG 247 (609)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG 247 (609)
.+ + .|++..+.|+.+...++..|++++.++.+.+ ..+| +++.+.+. .+++++++++|+||||
T Consensus 92 -------~~-~--~v~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d-~~~~~~~~-----~~~~~v~~~~P~NPtG 155 (354)
T PRK06358 92 -------KP-K--KVLILAPTFAEYERALKAFDAEIEYAELTEETNFAAN-EIVLEEIK-----EEIDLVFLCNPNNPTG 155 (354)
T ss_pred -------CC-C--cEEEecCChHHHHHHHHHcCCeeEEEeCccccCCCcc-HHHHHhhc-----cCCCEEEEeCCCCCCC
Confidence 23 3 3778888998888888889999999998753 3678 66666665 4689999999999999
Q ss_pred cccC---HHHHHHHHHHhCCeEEEeccccCCccc---cc-CCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEe-chhhcc
Q 038499 248 IYSD---TRSIARLLHQYGGFACFDFAASGPYVE---ID-VRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMT-KALYQL 318 (609)
Q Consensus 248 ~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~---id-~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~-~~~~~l 318 (609)
.+.+ +++|+++|++||+++++|+++.--... .. +........-+++.|++|.+|-| ..+|+++++ +.+ +
T Consensus 156 ~~~~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~RiG~lv~~~~~~--~ 233 (354)
T PRK06358 156 QLISKEEMKKILDKCEKRNIYLIIDEAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGLRLGYGLTSNKNL--A 233 (354)
T ss_pred CccCHHHHHHHHHHHHhcCCEEEEeCcccccCCCccchhHHHhccCCCCEEEEEechhhccCcchhheeeecCCHHH--H
Confidence 9987 667888899999999999996522110 11 11111112347778999999844 459999985 454 1
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN 398 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~ 398 (609)
+.+... +...+...+.+.+ ....+.+....+...+..++.++++.+.|+++
T Consensus 234 ~~~~~~--------------------------~~~~~~~~~~q~~---~~~~l~~~~~~~~~~~~~~~~r~~l~~~L~~~ 284 (354)
T PRK06358 234 EKLLQM--------------------------REPWSINTFADLA---GQTLLDDKEYIKKTIQWIKEEKDFLYNGLSEF 284 (354)
T ss_pred HHHHHh--------------------------CCCCcchHHHHHH---HHHHhccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 222110 0001111222221 11112121123555666677788899999888
Q ss_pred CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhH
Q 038499 399 QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQ 478 (609)
Q Consensus 399 p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~ 478 (609)
+++.+..+ ..+++ |...+ +..++.+.|.+ .||.+++|..+.+.
T Consensus 285 ~~~~~~~~----~g~f~-~~~~~-------------------~~~~~~~~l~~-~gI~v~~~~~f~~~------------ 327 (354)
T PRK06358 285 KGIKVYKP----SVNFI-FFKLE-------------------KPIDLRKELLK-KGILIRSCSNYRGL------------ 327 (354)
T ss_pred CCcEEcCC----cceEE-EEEcC-------------------chHHHHHHHHH-CCeEEEECCCCCCC------------
Confidence 88777654 23433 33333 23678888876 59999988765310
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 479 SYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 479 ~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.++++||+++ +.++.++++++|+.+.
T Consensus 328 ---------------~~~~iRls~~---~~~~~~~l~~~l~~~~ 353 (354)
T PRK06358 328 ---------------DENYYRVAVK---SREDNKKLLKALEVIL 353 (354)
T ss_pred ---------------CCCEEEEEeC---CHHHHHHHHHHHHHHh
Confidence 2479999997 9999999999998865
|
|
| >PRK06767 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.8e-22 Score=210.02 Aligned_cols=303 Identities=17% Similarity=0.148 Sum_probs=201.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH-
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ- 200 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~- 200 (609)
...++++.+++++|.+ +.+++ ++|+. ++..++..+ +++|| .|+++...|......+..
T Consensus 62 t~~~Le~~lA~l~G~~--~al~~-~sG~~-Ai~~~l~al---------------~~~Gd--~Vv~~~~~y~~~~~~~~~~ 120 (386)
T PRK06767 62 TVKLFEERMAVLEGGE--EALAF-GSGMA-AISATLIGF---------------LKAGD--HIICSNGLYGCTYGFLEVL 120 (386)
T ss_pred chHHHHHHHHHHhCCC--cEEEE-CCHHH-HHHHHHHHH---------------hCCCC--EEEEcCCcHHHHHHHHHHH
Confidence 3678999999999975 24555 58876 676666554 37898 699998888877655433
Q ss_pred ---cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc
Q 038499 201 ---SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277 (609)
Q Consensus 201 ---~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~ 277 (609)
.|+++..++. .|+++++++++ +++++|++++++||||.+.|+++|.++||++|+++++|++++.+..
T Consensus 121 ~~~~gi~~~~~~~-----~d~~~l~~~i~-----~~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~ 190 (386)
T PRK06767 121 EEKFMITHSFCDM-----ETEADIENKIR-----PNTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYL 190 (386)
T ss_pred HhhcCeEEEEeCC-----CCHHHHHHhhC-----cCceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 4666666654 38899999997 6899999999999999999999999999999999999999887655
Q ss_pred cccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCC-CCccCCCceEeecccccccccccccccccccC
Q 038499 278 EIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFP-PSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~-p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
..++. .++|+++.|++|+++|++. .|+++.+++. +..+. .... ...
T Consensus 191 ~~pl~----~g~Div~~S~sK~l~g~g~~~gG~v~~~~~~--i~~~~~~~~~-------------------------~~g 239 (386)
T PRK06767 191 QRPLE----LGCDAVVHSATKYIGGHGDVVAGVTICKTRA--LAEKIRPMRK-------------------------DIG 239 (386)
T ss_pred CCchh----cCCcEEEecCcceecCCCCceeEEEEeChHH--HHHHHHHHHH-------------------------HhC
Confidence 44432 2789999999999998875 4899998876 22211 1100 001
Q ss_pred CC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEE-eCCCC-------CCCcceEEEEeccCCCC
Q 038499 355 GT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKI-LGNTS-------TKRQAILSFNIHSSTIN 425 (609)
Q Consensus 355 gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v-~~~~~-------~~r~~~~~f~~~~~~~~ 425 (609)
+. .++. +.+.. ......+...++.++++.++.+.|+++|+++. .-|.. ....++++|.+.. ..
T Consensus 240 ~~~~~~~----a~l~~--~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~-~~- 311 (386)
T PRK06767 240 GIMAPFD----AWLLL--RGLKTLAVRMDRHCDNAEKIVSFLKNHDAVEGVWYPEGELASRQMKRGGGVISFSIKG-GK- 311 (386)
T ss_pred CCCCHHH----HHHHH--cCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCcHHHHHhCCCCCceEEEEEcC-CH-
Confidence 11 1111 11111 11122345557778899999999999999874 32311 1245789998864 21
Q ss_pred CcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec
Q 038499 426 SSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF 502 (609)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~ 502 (609)
.....+.+.| +.+++.++-|...+ .|.......+..+... ..|+.++.||||+
T Consensus 312 --------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~l~R~sv 367 (386)
T PRK06767 312 --------------EETQAFINDL-HFITIAVSLGDTETLIQHPATMTHAAIPAELRQ---------EMGIYDNLIRLSV 367 (386)
T ss_pred --------------HHHHHHHHhC-CccEEecCCCCcCccccCCCccccccCCHHHHH---------hcCCCCCeEEEEe
Confidence 2356788888 56888888875433 1222111122222111 2567789999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 038499 503 PYYMSNEEFEFTLEAL 518 (609)
Q Consensus 503 ~~~~t~eeid~ll~al 518 (609)
+.-..++=++.+.++|
T Consensus 368 GlE~~~dl~~dl~~al 383 (386)
T PRK06767 368 GLESWEDIVSDLEQAL 383 (386)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 9754433344444443
|
|
| >PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-21 Score=210.29 Aligned_cols=341 Identities=14% Similarity=0.093 Sum_probs=213.8
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.||++++...+.+..+.+.... .... +.+++.......++++.+++++|++.. +++ ++|+.+ +..+
T Consensus 30 ~pi~~~~~~~~~~~~~~~~~~~~-------~~~~--~~y~r~~~p~~~~Le~~lA~l~G~~~~--~~~-~sG~~A-i~~~ 96 (398)
T PRK07504 30 EALFLTQGFVYDTAEAAEARFKG-------EDPG--FIYSRYSNPTVDMFEKRMCALEGAEDA--RAT-ASGMAA-VTAA 96 (398)
T ss_pred CCeECCCCccCCCHHHHHHHhcc-------CcCC--ceeecCCCchHHHHHHHHHHHhCCCee--eEe-cCHHHH-HHHH
Confidence 56999999888877665543211 1110 111222233467899999999999754 444 478764 4443
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH----HcCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
+..+ +++|| .|+++...|.++...+. ..|++++.++ .+|+++++++++ +
T Consensus 97 l~~~---------------l~~Gd--~Vl~~~~~y~~~~~~~~~~~~~~G~~v~~vd-----~~d~e~l~~ai~-----~ 149 (398)
T PRK07504 97 ILCQ---------------VKAGD--HVVAARALFGSCRYVVETLLPRYGIESTLVD-----GLDLDNWEKAVR-----P 149 (398)
T ss_pred HHHH---------------hCCCC--EEEEcCCchhHHHHHHHHHHhhcCeEEEEEC-----CCCHHHHHHhcC-----c
Confidence 3332 47899 69999988887765543 4688988885 268999999998 6
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCC-Cc-EEEE
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG-SP-GILL 310 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~-G~L~ 310 (609)
+|++|++++++||||.+.|+++|.++|+++|+++++|++++.+.....+ . .++|++++|+||+++|++ .. |+++
T Consensus 150 ~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~~~~-~---~gaDivv~S~sK~l~g~g~~~GG~vv 225 (398)
T PRK07504 150 NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQKPL-E---LGAHIVVYSATKHIDGQGRCLGGVVL 225 (398)
T ss_pred CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccCCch-h---hCCCEEEeeccccccCCccceEEEEE
Confidence 8999999999999999999999999999999999999998876543222 2 278999999999999875 34 5676
Q ss_pred EechhhccCC-CCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 038499 311 MTKALYQLGS-FPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIE 389 (609)
Q Consensus 311 ~~~~~~~l~~-~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (609)
.+++. +.. +... .+......+-. .+++.+. .........++..+++.
T Consensus 226 ~~~~~--i~~~~~~~-------------------------~~~~g~~~s~~---~A~~~l~--~L~tl~~R~~~~~~na~ 273 (398)
T PRK07504 226 SDKAW--IEEHLQDY-------------------------FRHTGPSLSPF---NAWTLLK--GLETLPVRVRQQTESAA 273 (398)
T ss_pred eCcHH--HHHHHHHH-------------------------HHHhCCCCCHH---HHHHHHh--ccchHHHHHHHHHHHHH
Confidence 66665 211 1000 00001111111 1111111 12234555666678889
Q ss_pred HHHHHhCCCCceE-EeCCCC--C-----------CCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCc
Q 038499 390 RALERLLPNQNIK-ILGNTS--T-----------KRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGI 455 (609)
Q Consensus 390 ~~~~~L~~~p~i~-v~~~~~--~-----------~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI 455 (609)
++.+.|+++|++. |+-|.- . ...++++|.+.. +. .....+++.| +.+.+
T Consensus 274 ~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~-~~---------------~~~~~~~~~l-~~~~~ 336 (398)
T PRK07504 274 AIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG-GK---------------EAAFRFLNAL-KIVRI 336 (398)
T ss_pred HHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC-CH---------------HHHHHHHHhC-Cccee
Confidence 9999999988874 444421 1 125688888864 21 1234566666 56666
Q ss_pred EeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 456 QARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 456 ~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
.+.-|...+ .|.......+.++... ..|+.++.||||++.-..++=++.+.++|+
T Consensus 337 ~~slG~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~liR~svGlE~~~dl~~dl~~al~ 394 (398)
T PRK07504 337 SNNLGDAKSLITHPATTTHKNLSPEARA---------ELGISEGFLRLSAGLEDTDDLIEDLAAALK 394 (398)
T ss_pred cccCCCCCeeeeCCCCCCcccCCHHHHH---------hcCCCCCeEEEEeccCCHHHHHHHHHHHHH
Confidence 666665333 1221111222222111 246678999999997554444555555554
|
|
| >PLN02376 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-21 Score=211.76 Aligned_cols=357 Identities=13% Similarity=0.101 Sum_probs=223.3
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCc-------cCCCCCCchhhHHHHHHHHHHHHHHHHHhC----CCCCCcEEEe
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFY-------GNTHTCDSYVGQHTTNMVHEASNYIKKCLG----GGQEDAMIFC 145 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~-------~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g----~~~~~~vift 145 (609)
.+|-|+.+.+..+-+.+.+.+.+...... ..++...+....+..++++.+.+.+.+..| .+++ +|++|
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe-~Ivit 125 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPE-RVVMS 125 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChh-hEEEc
Confidence 58999999988877777888876543210 011111111111223344444444444434 5665 89998
Q ss_pred CChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH-HcCceEEEEecCC--CCCCCHHHHH
Q 038499 146 GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR-QSLAEVVEIGLDD--DGLLDIEALR 222 (609)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~--~g~ld~e~L~ 222 (609)
+|+++++..++.++. +||| .|+++.+.|+.+...++ ..|++++.|+++. ++.+|+++++
T Consensus 126 -~Ga~~al~~l~~~l~---------------~pGD--~Vlv~~P~Y~~~~~~~~~~~G~~vv~v~~~~~~~~~~~~~~le 187 (496)
T PLN02376 126 -GGATGANETIMFCLA---------------DPGD--VFLIPSPYYAAFDRDLRWRTGVEIIPVPCSSSDNFKLTVDAAD 187 (496)
T ss_pred -cchHHHHHHHHHHhC---------------CCCC--EEEECCCCccchHHHHHhhCCCEEEEEeCCCCccCcCCHHHHH
Confidence 899999999988874 8999 79999999999887777 5799999999863 4678999998
Q ss_pred HHHhhhc-cCCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCc----ccccCCCC----CCC--C
Q 038499 223 SKLELYK-DAKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY----VEIDVRSG----QTD--G 288 (609)
Q Consensus 223 ~al~~~~-~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~----~~~--~ 288 (609)
+++.+.. ...+++++++++|+||||.+.+. ++|+++|++||+++|+|++++.-. ..+.+..+ ... .
T Consensus 188 ~a~~~a~~~~~~~k~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~ 267 (496)
T PLN02376 188 WAYKKAQESNKKVKGLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVN 267 (496)
T ss_pred HHHHHHHhcCCCeeEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccC
Confidence 7764211 11478989999999999999984 567889999999999999976421 11111111 000 1
Q ss_pred cc--EEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHH
Q 038499 289 YD--AIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRA 365 (609)
Q Consensus 289 ~D--~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~a 365 (609)
.+ +++.|++|.+|.| ..+|+++..++.+ ....... ... ...+.+.+.+
T Consensus 268 ~~~v~vv~S~SK~~glpGlRvG~li~~~~~l-~~~~~~~-------------------------~~~-~~vs~~~Q~a-- 318 (496)
T PLN02376 268 VDLIHIVYSLSKDMGLPGFRVGIVYSFNDSV-VSCARKM-------------------------SSF-GLVSSQTQLM-- 318 (496)
T ss_pred CCeEEEEEeccccCCCCcceEEEEEECCHHH-HHHHHHH-------------------------hhc-CCCCHHHHHH--
Confidence 12 4567999999855 4599999964441 1111000 000 1123333322
Q ss_pred HHHHHHHHhcC----HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCC
Q 038499 366 ALAFWVKEYIG----HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLH 441 (609)
Q Consensus 366 al~~~~~~~~g----~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 441 (609)
+..++.+... ....+++.++.++.+.+.|.+. ++.++.+ ..+++.|.-.+....+ ......
T Consensus 319 -~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-gi~~~~~----~aG~flwi~l~~~~~~---------~~~~~~ 383 (496)
T PLN02376 319 -LASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-DIACLTS----NAGLFAWMDLRHLLRD---------RNSFES 383 (496)
T ss_pred -HHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCC----CceEEEEEEchhhhcc---------CCchhH
Confidence 1222222111 2233555666677777888765 6666544 3456666544401100 001112
Q ss_pred hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 442 GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 442 ~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
..++++.|.++.||.+++|..|... .+||+||+++. .++++++..++.|+.+
T Consensus 384 e~~l~~~ll~~~gV~v~pGs~F~~~---------------------------~~g~~Ri~fa~-~~~~~l~~al~rl~~~ 435 (496)
T PLN02376 384 EIELWHIIIDKVKLNVSPGSSFRCT---------------------------EPGWFRICFAN-MDDDTLHVALGRIQDF 435 (496)
T ss_pred HHHHHHHHHHcCCEEEeCccccCCC---------------------------CCCEEEEEeeC-CCHHHHHHHHHHHHHH
Confidence 3567777777779999999876421 25899999974 4678899999999888
Q ss_pred HHh
Q 038499 522 AIY 524 (609)
Q Consensus 522 ~~~ 524 (609)
+..
T Consensus 436 l~~ 438 (496)
T PLN02376 436 VSK 438 (496)
T ss_pred HHH
Confidence 764
|
|
| >PRK09082 methionine aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-21 Score=209.53 Aligned_cols=329 Identities=14% Similarity=0.069 Sum_probs=220.8
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCC--CCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQ--EDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~--~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
.++.+.+++.+.+.... . .|....+...+++.+.+++.+.+|.+. +++|++| +|++.++..++..+
T Consensus 44 ~~~~~~~~~~~~~~~~~----~-~Y~~~~G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t-~G~~~al~~~~~~~------ 111 (386)
T PRK09082 44 GPPYLVEALAYAMAAGH----N-QYPPMTGVAALREAIAAKTARLYGRQYDADSEITVT-AGATEALFAAILAL------ 111 (386)
T ss_pred CCHHHHHHHHHHHHcCC----C-CCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CCHHHHHHHHHHHH------
Confidence 35677788777654211 1 122223456677788888888888753 2368888 78888888887765
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCc
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~ 245 (609)
+.+|| .|+++.+.|.++...++..|++++.++.+. ++.+|+++++++++ ++++++++++++||
T Consensus 112 ---------~~~gd--~Vli~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~l~~p~NP 175 (386)
T PRK09082 112 ---------VRPGD--EVIVFDPSYDSYAPAIELAGGRAVRVALQPPDFRVDWQRFAAAIS-----PRTRLIILNTPHNP 175 (386)
T ss_pred ---------cCCCC--EEEEeCCCchhhHHHHHHcCCEEEEEecCcccccCCHHHHHHhcC-----ccceEEEEeCCCCC
Confidence 37888 799999999999888999999999999974 57899999999997 57899999999999
Q ss_pred ccccc---CHHHHHHHHHHhCCeEEEeccccCCcc----cccCCCCC-CCCccEEEEcCCCCCCCCC-CcEEEEEechhh
Q 038499 246 TGIYS---DTRSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQ-TDGYDAIFLSTHKFLGGPG-SPGILLMTKALY 316 (609)
Q Consensus 246 TG~~~---dl~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~-~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~ 316 (609)
||.+. ++++|.++|++||+++|+|++++.... ...+.... ..+..+++.|++|.+|.|+ .+|+++.++++
T Consensus 176 tG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~RiG~iv~~~~l- 254 (386)
T PRK09082 176 SGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGWKVGYCVAPAAL- 254 (386)
T ss_pred CCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechhhccchhhhhhhhhCCHHH-
Confidence 99985 467889999999999999999753211 11222111 1234678889999998554 58999999887
Q ss_pred ccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
+..+... ......+.+.+.+.+ +..++.......+.+++..++.++++.+.|.
T Consensus 255 -~~~~~~~------------------------~~~~~~~~~~~~q~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 307 (386)
T PRK09082 255 -SAEFRKV------------------------HQYNTFTVNTPAQLA--LADYLRAEPEHYLELPAFYQAKRDRFRAALA 307 (386)
T ss_pred -HHHHHHH------------------------HhhhcCCCChHHHHH--HHHHHhCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 3222111 000111233333332 2222211122244556667778888888888
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC-hhhhhhcCCC
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG-PYGHHLLDLD 475 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~-p~~~~ll~i~ 475 (609)
+. ++++..+ ..+.+.+...+ .. ...+..++++.|.+++||.+.+|..|.+ +.
T Consensus 308 ~~-~~~~~~~----~g~~~~~~~~~-~~-------------~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~-------- 360 (386)
T PRK09082 308 NS-RFKLLPC----EGTYFQLVDYS-AI-------------SDLDDVEFCQWLTREHGVAAIPLSVFYADPF-------- 360 (386)
T ss_pred hC-CCcccCC----CeeEEEEEecc-cc-------------CCCCHHHHHHHHHHhCCEEEeCcHHhCCCCC--------
Confidence 74 6666543 33554443332 10 0135678888876778999998875531 10
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
.++++||+++. ++++++..++.|+.
T Consensus 361 ------------------~~~~~Ri~~~~--~~~~l~~~~~rl~~ 385 (386)
T PRK09082 361 ------------------PHRLVRLCFAK--QEETLDAAAERLCQ 385 (386)
T ss_pred ------------------CCCEEEEEecC--CHHHHHHHHHHHhh
Confidence 24899999984 68888888887764
|
|
| >PRK13034 serine hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.5e-21 Score=206.00 Aligned_cols=343 Identities=17% Similarity=0.118 Sum_probs=213.7
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCC-chhhHHHHHHHHH-HHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCD-SYVGQHTTNMVHE-ASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~-~~~~~~~~~~~~e-~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
...++.|.+++...+...|+....++ ...|....+..++ +++.+++++|.+. .+++++||+.+ +..++.++
T Consensus 38 n~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~~la~l~g~~~--alv~~~SG~~A-~~~~l~al---- 110 (416)
T PRK13034 38 NFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIERAKQLFGCDY--ANVQPHSGSQA-NGAVYLAL---- 110 (416)
T ss_pred cCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHHHHHHHhCCCc--eEEecCCcHHH-HHHHHHHh----
Confidence 44678888988888655554332221 2223223333333 4459999999873 45666678775 55555554
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHH--cCceE--EEEecCC-CCCCCHHHHHHHHhhhccCCCceEEE
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQ--SLAEV--VEIGLDD-DGLLDIEALRSKLELYKDAKRPILGS 238 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~--~G~~v--v~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~ 238 (609)
+++|| .|++++..|.+.. ..++. .+... +.++.+. ++.+|++++++++.. .++++|+
T Consensus 111 -----------~~~GD--~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~----~~~klVi 173 (416)
T PRK13034 111 -----------LKPGD--TILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVEELAKE----HKPKLII 173 (416)
T ss_pred -----------cCCCC--EEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHHHHHhh----cCCeEEE
Confidence 47999 7999999998732 11211 12222 3444443 567899999999864 4678887
Q ss_pred EecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhcc
Q 038499 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQL 318 (609)
Q Consensus 239 ~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l 318 (609)
++. ..+|...|+++|.++|++||+++++|+||+.|....+.......++|++++|+||+++||.| |+++.+++.. .
T Consensus 174 ~~~--~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~G-G~v~~~~~~~-~ 249 (416)
T PRK13034 174 AGF--SAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRG-GMILTNDEEI-A 249 (416)
T ss_pred ECC--CccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCC-eEEEECcHHH-H
Confidence 654 34688899999999999999999999999988765444332224689999999999988887 7777766542 1
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN 398 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~ 398 (609)
..+.+....+ . . +.+.....+++++++......+...++++.+++++++++.|.++
T Consensus 250 ~~~~~~~~~~-~----------------------~-~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~ 305 (416)
T PRK13034 250 KKINSAVFPG-L----------------------Q-GGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKER 305 (416)
T ss_pred HHHHhhcCCc-c----------------------c-CCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHc
Confidence 1121111110 0 0 11111122222222221111234456788999999999999887
Q ss_pred CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhH
Q 038499 399 QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQ 478 (609)
Q Consensus 399 p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~ 478 (609)
|+.+..+. ...+++.+.+.. .. .....+.+.|. +.||.+..-. .|......
T Consensus 306 -G~~~~~~~--~~t~i~~v~~~~-~~---------------~~~~~~~~~L~-~~GI~v~~~~---~p~~~~~p------ 356 (416)
T PRK13034 306 -GYDLVSGG--TDNHLLLVDLRP-KG---------------LSGKDAEQALE-RAGITVNKNT---VPGDTESP------ 356 (416)
T ss_pred -CCEeccCC--CCCcEEEEEcCC-CC---------------CCHHHHHHHHH-hCCcEEeccC---CCCCCcCC------
Confidence 88887531 234555555543 11 34566667774 4699987311 11100000
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEecCC----CCCHHHHHHHHHHHHHHHHh
Q 038499 479 SYQIRSAIQKGYVGVKPGWTRISFPY----YMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 479 ~~~~~~~~~~~~~~~~~g~iRls~~~----~~t~eeid~ll~al~~v~~~ 524 (609)
. .+..+|++++. .++++|+++++++|+.++..
T Consensus 357 -------------~-~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~~ 392 (416)
T PRK13034 357 -------------F-VTSGIRIGTPAGTTRGFGEAEFREIANWILDVLDD 392 (416)
T ss_pred -------------C-CCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 0 13679999887 66699999999999999874
|
|
| >PRK09147 succinyldiaminopimelate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-21 Score=206.18 Aligned_cols=340 Identities=15% Similarity=0.079 Sum_probs=213.2
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC---CCCCcEEEeCChHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG---GQEDAMIFCGSGTTAA 152 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~---~~~~~vift~sGttaa 152 (609)
+.+.++.+... +.++.+.+++.+.+..... |....+..++++.+.+++.+.+|. +++++|++| +|++.+
T Consensus 30 ~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~~------Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it-~G~~~a 102 (396)
T PRK09147 30 PPISLSIGEPKHPTPAFIKDALAANLDGLAS------YPTTAGLPALREAIAAWLERRYGLPALDPATQVLPV-NGSREA 102 (396)
T ss_pred CeEecCCCCCCCCCCHHHHHHHHHHhhhhcC------CCCCCCCHHHHHHHHHHHHHHhCCCcCCccceEEEC-CChHHH
Confidence 45555544332 3456777777665432211 111112234444555555555574 443378887 899999
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcC---CCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhh
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRD---EERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLEL 227 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~---gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~ 227 (609)
+..++..+ +++ || .|+++.+.|+.+...++..|++++.||++++ +.+|+++|++++.
T Consensus 103 l~~~~~~l---------------~~~~~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~vp~~~~~~~~~d~~~l~~~~~- 164 (396)
T PRK09147 103 LFAFAQTV---------------IDRDGPGP--LVVCPNPFYQIYEGAALLAGAEPYFLNCDPANNFAPDFDAVPAEVW- 164 (396)
T ss_pred HHHHHHHH---------------cCCCCCCC--EEEEcCCCccchHHHHHhcCCEEEEeccCccccCccCHHHHHHHHh-
Confidence 99988876 367 66 7999999999888888889999999998753 4799999998886
Q ss_pred hccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc-----cccc-CC---CCCCC--CccEEE
Q 038499 228 YKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY-----VEID-VR---SGQTD--GYDAIF 293 (609)
Q Consensus 228 ~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~-----~~id-~~---~~~~~--~~D~v~ 293 (609)
++++++++++++||||.+.+ +++|+++|++|++++|+|++++... .++. +. ....+ ...+++
T Consensus 165 ----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~ 240 (396)
T PRK09147 165 ----ARTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVF 240 (396)
T ss_pred ----hccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhccccCccccccEEEE
Confidence 57999999999999999987 5668888999999999999976421 1111 00 01001 224788
Q ss_pred EcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHH
Q 038499 294 LSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK 372 (609)
Q Consensus 294 ~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~ 372 (609)
.|++|.+|.|+ .+|+++.++++ ++.+.... .....+.+.+.+. ++++.+.
T Consensus 241 ~S~SK~~~~~GlRiG~~~~~~~l--~~~~~~~~------------------------~~~~~~~~~~~q~--a~~~~~~- 291 (396)
T PRK09147 241 HSLSKRSNVPGLRSGFVAGDAAL--LKKFLLYR------------------------TYHGCAMPPAVQA--ASIAAWN- 291 (396)
T ss_pred eccccccCCccceeeeecCCHHH--HHHHHHHh------------------------hhcccCCCHHHHH--HHHHHhc-
Confidence 89999876663 59999998887 33321100 0000112222222 2122221
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhh
Q 038499 373 EYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDL 452 (609)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~ 452 (609)
........+++.++.++.+.+.|++. +.+.. +..+++.|.-.+ .+...+++.|.++
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~L~~~--~~~~~----p~~g~f~~~~~~------------------~~~~~~~~~ll~~ 347 (396)
T PRK09147 292 DEAHVRENRALYREKFDAVTPILAPV--LDVQL----PDAGFYLWAKVP------------------GDDTEFARRLYAD 347 (396)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHh--cCCCC----CCeeEEEEEECC------------------CCHHHHHHHHHHh
Confidence 22234455566666677777777653 33322 234555555443 2356677777666
Q ss_pred cCcEeccCcccCCh-hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 453 FGIQARGGCACAGP-YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 453 ~GI~v~~G~~ca~p-~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.||.+.+|..|... .+.. -..+++||+++. ++++++..+++|+.++
T Consensus 348 ~gv~v~pg~~f~~~~~~~~----------------------~~~~~iRi~~~~--~~~~l~~~l~rl~~~~ 394 (396)
T PRK09147 348 YNVTVLPGSYLAREAHGVN----------------------PGAGRVRIALVA--PLAECVEAAERIVDFC 394 (396)
T ss_pred CCEEEeCCccccccccCCC----------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 79999999866421 0000 025899999973 6788888888888765
|
|
| >PRK07550 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-21 Score=204.91 Aligned_cols=328 Identities=13% Similarity=0.002 Sum_probs=212.6
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
.+..+.+++.+.+.. .+...|....+..++++.+.+++.+..| .+++ +|++| +|+++++..++.++
T Consensus 43 ~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G~~~al~~~~~~l------ 110 (386)
T PRK07550 43 PPPELLRALAEAAAD----PAAHLYGPVEGLPELREAYAAHYSRLYGAAISPE-QVHIT-SGCNQAFWAAMVTL------ 110 (386)
T ss_pred CCHHHHHHHHHHHhC----cCCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcc-eEEEe-cCcHHHHHHHHHHh------
Confidence 356677777665431 1111121112344555555555555555 3444 89998 78888898888776
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
+++|| .|+++.+.|..+...++..|++++.++.++ ++.+|+++|+++++ .+++++++++++|
T Consensus 111 ---------~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~~~-----~~~~~v~~~~P~N 174 (386)
T PRK07550 111 ---------AGAGD--EVILPLPWYFNHKMWLDMLGIRPVYLPCDEGPGLLPDPAAAEALIT-----PRTRAIALVTPNN 174 (386)
T ss_pred ---------cCCCC--EEEEcCCCCcchHHHHHhcCCEEEEEecCCCcCCCCCHHHHHHHhc-----ccCcEEEEeCCCC
Confidence 37898 699999999888888889999999999974 34679999999998 5788888999999
Q ss_pred ccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCC-CCCCccEEEEcCCCCCCCC-CCcEEEEEechh
Q 038499 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSG-QTDGYDAIFLSTHKFLGGP-GSPGILLMTKAL 315 (609)
Q Consensus 245 ~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~ 315 (609)
|||.+.+ +++|+++|++||+++|+|++++.... +...... ....-.+++.|++|.+|.| .++|++++++++
T Consensus 175 PtG~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~RiG~i~~~~~~ 254 (386)
T PRK07550 175 PTGVVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGHRVGAVVASPAR 254 (386)
T ss_pred CCCcccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhccCcccceEeeecCHHH
Confidence 9999987 67899999999999999999753211 1111100 0012246788999999844 358999998877
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
+..+.... .....+.+.+.+.+ ..++.- + ....+..+++.++.++++.+.
T Consensus 255 --~~~~~~~~------------------------~~~~~~~s~~~q~~~~~~l~~-~--~~~~~~~~~~~~~~~~~l~~~ 305 (386)
T PRK07550 255 --IAEIEKFM------------------------DTVAICAPRIGQIAVAWGLPN-L--ADWRAGNRAEIARRRDAFRAV 305 (386)
T ss_pred --HHHHHHHH------------------------hhcccCCCcHHHHHHHHHhcc-H--HHHHHHHHHHHHHHHHHHHHH
Confidence 22221110 00111222333322 111110 0 112344556667778888888
Q ss_pred hCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC
Q 038499 395 LLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL 474 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i 474 (609)
|..++++.+. + ..+++.|...+ .. ..+..++++.|.+++||.+++|..+...
T Consensus 306 L~~~~~~~~~-~----~g~~~~~~~~~-~~--------------~~~~~~l~~~l~~~~gv~v~pg~~f~~~-------- 357 (386)
T PRK07550 306 FARLPGWELL-A----SGAYFAYVRHP-FP--------------DRPSREVARRLAKEAGILCLPGTMFGPG-------- 357 (386)
T ss_pred HHhCCCceeC-C----CceEEEEecCC-CC--------------CCCHHHHHHHHHHhcCEEEeCchhhCCC--------
Confidence 8876666543 2 23455554443 10 1457788888766689999988765310
Q ss_pred ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 475 DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
..+++||+++. .++++++.+++.|.+.
T Consensus 358 -------------------~~~~iRis~~~-~~~~~~~~~~~~l~~~ 384 (386)
T PRK07550 358 -------------------QEGYLRLAFAN-ADVAGIGELVERLRAF 384 (386)
T ss_pred -------------------CCCEEEEEeec-CCHHHHHHHHHHHHhh
Confidence 14799999974 4689999999988764
|
|
| >PRK08861 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-21 Score=207.20 Aligned_cols=310 Identities=15% Similarity=0.112 Sum_probs=201.4
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH-
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR- 199 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~- 199 (609)
.....+++.++++.|+ ++++++ +|+++++..++..+ +++|| +|+++...|.+....+.
T Consensus 53 pt~~~Le~~lA~leg~---e~ivvt-~gg~~Ai~~~l~al---------------l~~Gd--~Il~~~~~y~~~~~~~~~ 111 (388)
T PRK08861 53 PNRGLLEQTLSELESG---KGAVVT-NCGTSALNLWVSAL---------------LGPDD--LIVAPHDCYGGTYRLFNT 111 (388)
T ss_pred chHHHHHHHHHHHhCC---CeEEEE-CCHHHHHHHHHHHH---------------cCCCC--EEEEcCCchHHHHHHHHH
Confidence 3467789999999996 278887 67777888888766 47899 68998888887665442
Q ss_pred ---HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 200 ---QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 200 ---~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
..|++++.++. .|+++++++++ ++|++|++++|+||||.+.|+++|+++||++|+++++|++++.|.
T Consensus 112 ~~~~~gi~v~~vd~-----~d~e~l~~~i~-----~~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~ 181 (388)
T PRK08861 112 RANKGDFKVQFVDQ-----SDAAALDAALA-----KKPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPV 181 (388)
T ss_pred HHhcCCeEEEEECC-----CCHHHHHHhcC-----cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccc
Confidence 24678888753 48999999997 689999999999999999999999999999999999999998775
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
...++. .++|+++.|.|||++|+.+ .|+++.+++.. .+.+.. .+...
T Consensus 182 ~~~pl~----~GaDivv~S~tK~l~G~~d~~gG~i~~~~~~~-~~~~~~--------------------------~~~~~ 230 (388)
T PRK08861 182 LQKPLE----LGADFVIHSTTKYINGHSDVIGGVLITKTKEH-AEELAW--------------------------WGNCI 230 (388)
T ss_pred cCCCcc----cCCCEEEeecceeccCCCcceeEEEEecHHHH-HHHHHH--------------------------HHhcc
Confidence 443332 2789999999999999875 57777754331 111110 01111
Q ss_pred CC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCcceEEEEe
Q 038499 355 GT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQAILSFNI 419 (609)
Q Consensus 355 gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~~~~~f~~ 419 (609)
|. .+... +.+ .+....-+....++..+.+..+.+.|+.+|.+. |+-|. + ....++++|.+
T Consensus 231 G~~~~p~~---a~l--~~rgl~Tl~lR~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~ 305 (388)
T PRK08861 231 GATGTPFD---SYM--TLRGIRTLGARMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEF 305 (388)
T ss_pred CCCCChHH---HHH--HHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEe
Confidence 21 11111 111 111122344555677778889999999998874 54442 1 12456888887
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
.. +. -....+++.| +.+.+.+.-|...+ .|.......+.++... ..|+.++
T Consensus 306 ~~-~~---------------~~~~~f~~~l-~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~---------~~gi~~~ 359 (388)
T PRK08861 306 AG-SF---------------EQLKVFVKAL-ALFSLAESLGGVESLICHPASMTHRAMGEEALA---------EAGVSQQ 359 (388)
T ss_pred CC-CH---------------HHHHHHHhcC-CcceEccCCCCCcceeeCCCcccccccCHHHHH---------hcCCCCC
Confidence 64 21 1133455555 45566666554222 1221111122221111 2466789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 497 WTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.||||++.-.-++=++.+.++|+.+.+
T Consensus 360 liRlsvGlE~~~dli~Dl~~al~~~~~ 386 (388)
T PRK08861 360 LLRLSVGLEDAQDLIADLDQAFAKAAE 386 (388)
T ss_pred eEEEEeCcCCHHHHHHHHHHHHHHHHh
Confidence 999999976555555566666655443
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-20 Score=214.59 Aligned_cols=354 Identities=16% Similarity=0.122 Sum_probs=230.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
...+..+++.++.+++++++|.+. .-++.++|+.+-+..++.+... .+ .-..+.|.+|+++...|+++
T Consensus 524 ~sqG~lq~i~elq~~l~eltGmd~--~Sl~p~aGA~gE~agL~aiR~y------~~----~rge~~R~~vlip~saHgtn 591 (939)
T TIGR00461 524 QVEGYQELIAQLEKWLCSITGFDA--ISLQPNSGAQGEYAGLRVIRSY------HE----SRGENHRNICLIPVSAHGTN 591 (939)
T ss_pred HhHHHHHHHHHHHHHHHHHHCCCC--cccCCchHHHHHHHHHHHHHHH------HH----hcCCCCCCEEEEEccccCcC
Confidence 345678999999999999999983 3466666666533333222110 00 00123456899999999999
Q ss_pred HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC-HHHHHHHHHHhCCeEEEecccc
Q 038499 195 LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD-TRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d-l~~I~~la~~~g~~vivD~A~~ 273 (609)
...++..|++++.|+.+++|.+|+++|+++++++ .+++++|++++++| +|.+.| +++|+++||++|+++++|+|+.
T Consensus 592 Pasa~~~G~~Vv~V~~d~~G~iDle~L~~~i~~~--~~~taaV~iT~pst-~G~~e~~I~eI~~iah~~G~~v~VDgAq~ 668 (939)
T TIGR00461 592 PASAAMAGMQVVPVNCDQDGNIDLVDLKNKAEQH--GDELAAVMVTYPST-HGVFEPTIQHACDIVHSFGGQVYLDGANM 668 (939)
T ss_pred HHHHHHCCCEEEEeccCCCCCcCHHHHHHHHhhc--CCceEEEEEEeCCc-CceecccHHHHHHHHHHcCCEEEEEecCh
Confidence 9899999999999999999999999999999741 24789999999999 799977 9999999999999999999987
Q ss_pred CCccccc-CCCCCCCCccEEEEcCCCCCCCC-----CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 274 GPYVEID-VRSGQTDGYDAIFLSTHKFLGGP-----GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 274 ~~~~~id-~~~~~~~~~D~v~~S~hK~lggp-----~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
.+...+. ... .++|++++|.||+|++| .|+|++.+++.+ .|..+|+....... ..... .
T Consensus 669 ~al~~l~~Pg~---~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L------~~~lPg~~v~~t~d---~~gre--q- 733 (939)
T TIGR00461 669 NAQVGLTSPGD---LGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHL------IPFLPKHDVVSMIT---GIGGS--K- 733 (939)
T ss_pred hhCCCCCCccc---cCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhc------hhhcCCCccccccc---CCCCc--c-
Confidence 6544433 233 38999999999998844 446999999876 23334432211100 00000 0
Q ss_pred ccccccC--CChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC-CCCcceEEEEeccCCC
Q 038499 348 IEERESG--GTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTS-TKRQAILSFNIHSSTI 424 (609)
Q Consensus 348 ~~~r~~~--gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~-~~r~~~~~f~~~~~~~ 424 (609)
..+... .+.+..-++++.+-+.+....|+.++.+....+++|+.++|++ +++++.+.. .....-|.+...+ ..
T Consensus 734 -~Iga~s~~~~g~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~--~~~~l~~~~~~~~~hEfv~~~~~-~~ 809 (939)
T TIGR00461 734 -SIGSVSAAPYGSASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKD--HYPILFVGTLKHVAHECILDLRP-LK 809 (939)
T ss_pred -ccccccccccCcHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhc--cCcccccCCCCceeEEEEEeccc-hh
Confidence 001111 1112112222222222223456667777888899999999987 445554421 1112224444432 11
Q ss_pred CCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCC
Q 038499 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPY 504 (609)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~ 504 (609)
........++++.|.| +|+..-. ..+ | -++.+=|.+.-
T Consensus 810 -----------~~~g~~~~dIakrL~d-~G~hapt-~~~--p---------------------------v~g~lmiepTE 847 (939)
T TIGR00461 810 -----------AKTGIEAIDVAKRLQD-YGFHAPT-LSF--P---------------------------VPGTLMVEPTE 847 (939)
T ss_pred -----------hhcCCCHHHHHHHHHh-CCeeccc-cCC--c---------------------------cCCeEEEEeec
Confidence 1223578899999987 6997542 111 1 02444444445
Q ss_pred CCCHHHHHHHHHHHHHHHHhccc--------------ccCCCcccccCCceeec
Q 038499 505 YMSNEEFEFTLEALEFIAIYGQR--------------FLPLYNFNIKTGTWCFM 544 (609)
Q Consensus 505 ~~t~eeid~ll~al~~v~~~~~~--------------~~p~y~~~~~~~~w~~~ 544 (609)
-.|++|+|++++++..+.++... ..|...-+...++|.|.
T Consensus 848 ~eskeelD~f~~al~~I~~e~~~~~~g~~~~~~~~l~~ap~~~~~~~~~~w~~~ 901 (939)
T TIGR00461 848 SESLEELDRFCDAMIAIKEEINALVAGQPKGQDNPLKNAPHSLQSLITSEWWHP 901 (939)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcchHhhCCCCHHHhhcCCCCCC
Confidence 68999999999999988766542 44666666666678776
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >PRK09148 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.2e-21 Score=204.58 Aligned_cols=346 Identities=11% Similarity=0.085 Sum_probs=215.0
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~ 154 (609)
.+.|+.+... +.++.+.+++.+.+.. +....|....+..++++.+.+++.+..|. +++++|++| +|++.+|.
T Consensus 32 ~i~l~~~~p~~~~~~~~~~~~~~~~~~----~~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it-~G~~~al~ 106 (405)
T PRK09148 32 IIDLGMGNPDLPTPQHIVDKLCETAQD----PRTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVAT-LGSKEGFA 106 (405)
T ss_pred eEEcCCCCCCCCCCHHHHHHHHHHHcC----cccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEc-CChHHHHH
Confidence 4555544332 2356667777665431 11111211112233444444444443354 343368888 89999999
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
.++..+ +++|| .|+++.+.|+.+...++..|++++.++++.++. +++++++++... .+++
T Consensus 107 ~~~~~l---------------~~~gd--~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~-~~~~l~~~~~~~--~~~~ 166 (405)
T PRK09148 107 NMAQAI---------------TAPGD--VILCPNPSYPIHAFGFIMAGGVIRSVPAEPDEE-FFPALERAVRHS--IPKP 166 (405)
T ss_pred HHHHHh---------------cCCCC--EEEEcCCCCcccHHHHHhcCCEEEEEeCCCCCC-CccCHHHHHhhc--cccc
Confidence 998877 37888 699999999999888899999999999876442 345555555421 1578
Q ss_pred eEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCc----ccccCCCCC-CCCccEEEEcCCCCCCCCC-C
Q 038499 235 ILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQ-TDGYDAIFLSTHKFLGGPG-S 305 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~-~~~~D~v~~S~hK~lggp~-g 305 (609)
+++++++|+||||.+.+. ++|+++|++||+++|+|+++.... ....+.... ..+..+++.|++|.+|.|+ .
T Consensus 167 ~~v~l~~P~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGlR 246 (405)
T PRK09148 167 IALIVNYPSNPTAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGWR 246 (405)
T ss_pred eEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEeccccccCCcchh
Confidence 999999999999999996 568899999999999999975321 111121111 0123456789999998553 5
Q ss_pred cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHHHHHHHH
Q 038499 306 PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHEVIKKQE 384 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~~i~~~~ 384 (609)
+|+++.++++ ++.+... ......+.+.+.+.+. ..+ +.+ ....+.++++.
T Consensus 247 ~G~~v~~~~~--i~~l~~~------------------------~~~~~~~~~~~~q~~~--~~~-L~~~~~~~~~~~~~~ 297 (405)
T PRK09148 247 MGFAVGNERL--IAALTRV------------------------KSYLDYGAFTPIQVAA--TAA-LNGPQDCIAEMRELY 297 (405)
T ss_pred eeeeeCCHHH--HHHHHHH------------------------HHHhccCCChHHHHHH--HHH-HhCcHHHHHHHHHHH
Confidence 9999998887 3333111 0001112223333221 222 221 12345566677
Q ss_pred HHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 385 ETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 385 ~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
++.++++.+.|+++ ++.+..+ ..+++.|.-.+ ... ...+..++++.|.++.||.+++|..|.
T Consensus 298 ~~~r~~l~~~L~~~-~~~~~~p----~~g~f~~~~l~-~~~------------~~~~~~~~~~~ll~~~gV~v~pg~~f~ 359 (405)
T PRK09148 298 KKRRDVLVESFGRA-GWDIPPP----AASMFAWAPIP-EAF------------RHLGSLEFSKLLVEKADVAVAPGVGFG 359 (405)
T ss_pred HHHHHHHHHHHHHc-CCccCCC----CeeEEEEEECC-Ccc------------CCCCHHHHHHHHHHhCCEEEeCchhhC
Confidence 77888888888875 5554433 34556555544 210 002346777777666799999887653
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.. .++|+||++. .+.+++...++.|..++..
T Consensus 360 ~~---------------------------~~~~~Ri~~~--~~~~~l~~al~~l~~~l~~ 390 (405)
T PRK09148 360 EH---------------------------GDGYVRIALV--ENEQRIRQAARNIKRFLSS 390 (405)
T ss_pred CC---------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 11 1489999997 5788888888888777654
|
|
| >PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=206.86 Aligned_cols=298 Identities=24% Similarity=0.192 Sum_probs=209.9
Q ss_pred HHHHHHHHHHHhC------CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH
Q 038499 123 VHEASNYIKKCLG------GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196 (609)
Q Consensus 123 ~~e~r~~ia~~~g------~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (609)
..++|+.++++++ .+++.+|+++ +|+.+++..+...+. .++|+ .|+++.+.|+.+..
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~~~i~~~-~G~~~~~~~~~~~~~--------------~~~~~--~vlv~~P~y~~~~~ 108 (363)
T PF00155_consen 46 YPELREAIADFLGRRYGVPVDPEANILVT-SGAQAALFLLLRLLK--------------INPGD--TVLVPDPCYPSYIE 108 (363)
T ss_dssp HHHHHHHHHHHHHHHHTHHTTGGEGEEEE-SHHHHHHHHHHHHHH--------------SSTTS--EEEEEESSSTHHHH
T ss_pred hHHHHHHHHHHhhhccCcccccceEEEEe-cccccchhhhhhccc--------------ccccc--cceecCCccccccc
Confidence 5677888888888 4443367776 899999988887762 25777 69999999999999
Q ss_pred HHHHcCceEEEEecC--CCCCCCHHHHHHHHhhhccCC-CceEEEEecccCccccccCHHH---HHHHHHHhCCeEEEec
Q 038499 197 SWRQSLAEVVEIGLD--DDGLLDIEALRSKLELYKDAK-RPILGSFSACSNVTGIYSDTRS---IARLLHQYGGFACFDF 270 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~--~~g~ld~e~L~~al~~~~~~~-~~~lv~~s~~sn~TG~~~dl~~---I~~la~~~g~~vivD~ 270 (609)
.++..|++++.++++ .++.+|+++|++.+++..... +++++++++++||||...+.++ |+++|++||+++++|+
T Consensus 109 ~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De 188 (363)
T PF00155_consen 109 AARLLGAEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDE 188 (363)
T ss_dssp HHHHTTSEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEE
T ss_pred cccccCceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeee
Confidence 999999999999965 577899999999998533222 5789999999999999988665 5555999999999999
Q ss_pred cccCCccc-ccC----CCCCCCCc-cEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 271 AASGPYVE-IDV----RSGQTDGY-DAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 271 A~~~~~~~-id~----~~~~~~~~-D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+++..... .+. ... ..+. .+++.|++|.+|.|+ .+|++++++++ ++.+...
T Consensus 189 ~y~~~~~~~~~~~~~~~~~-~~~~~vi~~~S~SK~~g~~GlRvG~i~~~~~~--~~~l~~~------------------- 246 (363)
T PF00155_consen 189 AYSDLIFGDPDFGPIRSLL-DEDDNVIVVGSLSKSFGLPGLRVGYIVAPPEL--IERLRRF------------------- 246 (363)
T ss_dssp TTTTGBSSSSHTHHHHGHH-TTTSTEEEEEESTTTTTSGGGTEEEEEEEHHH--HHHHHHH-------------------
T ss_pred ceeccccCCCccCcccccc-cccccceeeeeccccccccccccccccchhhh--hhhhhhc-------------------
Confidence 97753322 111 101 1122 478889999998664 58999998877 2222110
Q ss_pred ccccccccccCCChhHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccC
Q 038499 344 YLEDIEERESGGTPQVIQMI-RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSS 422 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~ 422 (609)
.... .. +...+.+ ...+.-........+.+.++.++.++++.+.|.+. ++.+..+ ..+++.+...+
T Consensus 247 -----~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-~~~~~~~----~~~~~~~~~~~- 313 (363)
T PF00155_consen 247 -----QRSG-LS-SSPMQAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-GITVLPP----EAGFFLWVRLD- 313 (363)
T ss_dssp -----HHHT-TS-SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TSEEEHH----SBSSEEEEEES-
T ss_pred -----cccc-cc-cchhhHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-hhheeec----cCccEEEEEcc-
Confidence 0111 11 2222221 11111110000145677788888899999999877 8888865 35777777665
Q ss_pred CCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec
Q 038499 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF 502 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~ 502 (609)
. .+..++.+.|.++.||.+.+|..+.. ++++|+++
T Consensus 314 ~----------------~~~~~l~~~L~~~~gi~v~pg~~~~~-----------------------------~~~iRi~~ 348 (363)
T PF00155_consen 314 P----------------NDAEELAQELLEEYGILVRPGSYFGV-----------------------------PGYIRISL 348 (363)
T ss_dssp H----------------HHHHHHHHHHHHHHTEEEEEGGGGTS-----------------------------TTEEEEEG
T ss_pred c----------------chHHHHHHHHHHhCCEEEEecCCCCC-----------------------------CCEEEEEe
Confidence 1 13568888888877999998765541 48999999
Q ss_pred CCCCCHHHHHHHHHHH
Q 038499 503 PYYMSNEEFEFTLEAL 518 (609)
Q Consensus 503 ~~~~t~eeid~ll~al 518 (609)
...+++++++++++|
T Consensus 349 -a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 349 -ASHSEEDLEEALERL 363 (363)
T ss_dssp -GCSCHHHHHHHHHHH
T ss_pred -ccCCHHHHHHHHhhC
Confidence 567999999999886
|
On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A .... |
| >COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.9e-21 Score=210.25 Aligned_cols=308 Identities=17% Similarity=0.131 Sum_probs=217.8
Q ss_pred HHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 118 HTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 118 ~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
+...+++.+.++++...|. +++ +|++| +|++.++.++++++ ++||| .|++..+.|+...
T Consensus 133 G~~~LR~~ia~~l~~~~g~~~~~~-~IiiT-~G~q~al~l~~~~l---------------~~pGd--~v~vE~PtY~~~~ 193 (459)
T COG1167 133 GLPELREAIAAYLLARRGISCEPE-QIVIT-SGAQQALDLLLRLL---------------LDPGD--TVLVEDPTYPGAL 193 (459)
T ss_pred CcHHHHHHHHHHHHHhcCCccCcC-eEEEe-CCHHHHHHHHHHHh---------------CCCCC--EEEEcCCCcHHHH
Confidence 3445555555555544454 455 89999 89999999999987 48999 7999999999999
Q ss_pred HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce-EEEEecccCccccccCHH---HHHHHHHHhCCeEEEecc
Q 038499 196 LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI-LGSFSACSNVTGIYSDTR---SIARLLHQYGGFACFDFA 271 (609)
Q Consensus 196 ~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~-lv~~s~~sn~TG~~~dl~---~I~~la~~~g~~vivD~A 271 (609)
..++..|++++.||+|++| +|+++|++++.+ .++| ++++++.+||||..++.+ +|.++|++||+++|.|..
T Consensus 194 ~~~~~~g~~~~~vp~d~~G-~~~e~le~~~~~----~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~ 268 (459)
T COG1167 194 QALEALGARVIPVPVDEDG-IDPEALEEALAQ----WKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDY 268 (459)
T ss_pred HHHHHcCCcEEecCCCCCC-CCHHHHHHHHhh----cCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCc
Confidence 9999999999999999776 899999999986 4677 666788999999999975 599999999999999998
Q ss_pred ccCC----cccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 272 ASGP----YVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 272 ~~~~----~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
++.- ..+.++..+...+-.+++.|++|.+....++||+++++++ ++.+...
T Consensus 269 y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~PglRlG~vv~p~~~--~~~~~~~----------------------- 323 (459)
T COG1167 269 YGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGLRLGYVVAPPEL--IEKLLRL----------------------- 323 (459)
T ss_pred chhhhcCCCCCCChHhhCCCCCEEEEeeehhhcccccceeeeeCCHHH--HHHHHHH-----------------------
Confidence 6531 1111233333346679999999999844679999999887 2222110
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHhCCC-C-ceEEeCCCCCCCcceEEEEeccC
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEY---IGHEVIKKQEETYIERALERLLPN-Q-NIKILGNTSTKRQAILSFNIHSS 422 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~---~g~~~i~~~~~~l~~~~~~~L~~~-p-~i~v~~~~~~~r~~~~~f~~~~~ 422 (609)
......+++.+.+.+.+ .++ .+. .....++...++.++.+.+.|.+. + .+.+..+ ..+++.+...+
T Consensus 324 -k~~~~~~~s~~~Q~~la--~~l-~~G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p----~gG~flwl~l~- 394 (459)
T COG1167 324 -KQAADLGPSSLSQAALA--AFL-LSGHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRP----EGGLFLWLELP- 394 (459)
T ss_pred -HHHhcCCCChHHHHHHH--HHH-HcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecC----CceEEEEEEcC-
Confidence 12223345555543222 233 221 123466667777788888888765 3 4555544 44666666665
Q ss_pred CCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc-CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEe
Q 038499 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG-GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRIS 501 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~-G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls 501 (609)
.. .+...+...+.+ .|+.+.+ |..|..... ..+++|++
T Consensus 395 ~~---------------~~~~~l~~~a~~-~gv~i~~~g~~f~~~~~-------------------------~~~~~Rl~ 433 (459)
T COG1167 395 EG---------------IDARELLAAALE-KGVVVTPLGSAFSADGD-------------------------PRNGLRLS 433 (459)
T ss_pred CC---------------CCHHHHHHHHHH-CCCEEEcCCccccCCCC-------------------------CCCeEEEE
Confidence 21 466777777765 5999998 776652110 13699999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 502 FPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 502 ~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+++ .++++++..++.|..++...
T Consensus 434 ~s~-~~~e~i~~gi~~l~~~~~~~ 456 (459)
T COG1167 434 FSS-PSEEEIEEGIKRLAALLREA 456 (459)
T ss_pred cCC-CCHHHHHHHHHHHHHHHHHH
Confidence 985 46899999999888887653
|
|
| >PRK06836 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2e-20 Score=200.97 Aligned_cols=325 Identities=14% Similarity=0.088 Sum_probs=210.6
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC------CCCCCcEEEeCChHHHHHHHHHHHhc
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG------GGQEDAMIFCGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g------~~~~~~vift~sGttaal~~l~~~l~ 161 (609)
+.++.+.+++.+.+.....+.+. +.. .....++|+.++++++ ++++ +|++| +|++.+++.++..+
T Consensus 46 ~~~~~v~~a~~~~~~~~~~~~~~--y~~----~~g~~~lr~~ia~~l~~~~~~~~~~~-~i~~t-~G~~~al~~~~~~l- 116 (394)
T PRK06836 46 PPPAAVKEALRELAEEEDPGLHG--YMP----NAGYPEVREAIAESLNRRFGTPLTAD-HIVMT-CGAAGALNVALKAI- 116 (394)
T ss_pred CCCHHHHHHHHHHHhcCCcCccc--CCC----CCCCHHHHHHHHHHHHHHhCCCCCcC-cEEEe-CChHHHHHHHHHHh-
Confidence 45677888877665432111111 111 1224456666666654 3555 89998 78888999888776
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC-CCCCHHHHHHHHhhhccCCCceEEEEe
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD-GLLDIEALRSKLELYKDAKRPILGSFS 240 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-g~ld~e~L~~al~~~~~~~~~~lv~~s 240 (609)
+++|| .|+++.+.|..+...++..|++++.++.+++ +.+|+++|+++++ +++++++++
T Consensus 117 --------------~~~gd--~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~-----~~~~~v~~~ 175 (394)
T PRK06836 117 --------------LNPGD--EVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAIT-----PKTKAVIIN 175 (394)
T ss_pred --------------cCCCC--EEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcC-----cCceEEEEe
Confidence 37888 6889999998888778889999999999875 6899999999997 689999999
Q ss_pred cccCccccccC---HHHHHHHHHH------hCCeEEEeccccCCcccc-cCCC-CCCCCccEEEEcCCCCCCCCC-CcEE
Q 038499 241 ACSNVTGIYSD---TRSIARLLHQ------YGGFACFDFAASGPYVEI-DVRS-GQTDGYDAIFLSTHKFLGGPG-SPGI 308 (609)
Q Consensus 241 ~~sn~TG~~~d---l~~I~~la~~------~g~~vivD~A~~~~~~~i-d~~~-~~~~~~D~v~~S~hK~lggp~-g~G~ 308 (609)
+++||||.+.| +++|+++|++ ||+++++|+++..-...- .... .......+++.|++|.+|.|+ ++|+
T Consensus 176 ~p~NPtG~~~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGlRiG~ 255 (394)
T PRK06836 176 SPNNPTGVVYSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGERIGY 255 (394)
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhccCcceeeEE
Confidence 99999999988 4567778898 899999999965321100 0000 001133688889999998554 6999
Q ss_pred EEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc--CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 038499 309 LLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES--GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEET 386 (609)
Q Consensus 309 L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~--~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (609)
+++++.......+...... ..+.. ..++.+.+. ++...+.+ +. ...+.++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~q~---~~~~~l~~--~~--~~~~~~~ 307 (394)
T PRK06836 256 IAVNPEMEDADDLVAALVF---------------------ANRILGFVNAPALMQR---VVAKCLDA--TV--DVSIYKR 307 (394)
T ss_pred EecCHHHhhhHHHHHHHHH---------------------HhhccccccCCHHHHH---HHHHHhCC--hH--HHHHHHH
Confidence 9998765110000000000 00000 122333332 22222212 11 2334455
Q ss_pred HHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh
Q 038499 387 YIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 387 l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
.++.+.+.|+++ ++++..+ ..+++.|...+ . .+..++++.|. ++||.+++|..|.
T Consensus 308 ~r~~l~~~L~~~-g~~~~~~----~gg~~~~~~~~-~----------------~~~~~~~~~l~-~~gv~v~~g~~f~-- 362 (394)
T PRK06836 308 NRDLLYDGLTEL-GFECVKP----QGAFYLFPKSP-E----------------EDDVAFCEKAK-KHNLLLVPGSGFG-- 362 (394)
T ss_pred HHHHHHHHHHhC-CCEeecC----CceEEEEEeCC-C----------------CCHHHHHHHHH-hCCEEEECchhcC--
Confidence 677778888776 6776544 33555555444 1 24567777775 4699999886553
Q ss_pred hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 467 ~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++||+++ .++++++..++.|+++++.
T Consensus 363 ---------------------------~~~~iRi~~~--~~~~~~~~~i~~l~~~l~~ 391 (394)
T PRK06836 363 ---------------------------CPGYFRLSYC--VDTETIERSLPAFEKLAKE 391 (394)
T ss_pred ---------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 1479999997 4899999999999988753
|
|
| >PRK08636 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=203.73 Aligned_cols=336 Identities=12% Similarity=0.065 Sum_probs=213.7
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
.|..+.+++.+.+... .. . .|....+...+++.+.+++.+..|. +++++|++| +|+++++..++.++.
T Consensus 47 ~~~~~~~~~~~~~~~~--~~-~-~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it-~G~~~al~~~~~~l~----- 116 (403)
T PRK08636 47 TPQHIIDKLCESAQKP--KT-H-GYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVAT-MGSKEGYVHLVQAIT----- 116 (403)
T ss_pred CCHHHHHHHHHHhcCC--cc-C-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEC-CChHHHHHHHHHHhC-----
Confidence 4555666666655321 01 1 1111122334455555555555564 343369998 899999999988873
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC--CCCCCCHHHH----HHHHhhhccCCCceEEEEe
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD--DDGLLDIEAL----RSKLELYKDAKRPILGSFS 240 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~g~ld~e~L----~~al~~~~~~~~~~lv~~s 240 (609)
++|| .|++..+.|+.+...++..|++++.|+++ .++.+|+++| ++++++. ..++++++++
T Consensus 117 ----------~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~--~~~~~~i~~~ 182 (403)
T PRK08636 117 ----------NPGD--VAIVPDPAYPIHSQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRES--SPKPKYVVVN 182 (403)
T ss_pred ----------CCCC--EEEEcCCCCcchHHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhc--cCCceEEEEe
Confidence 7898 79999999999988899999999999885 3457898765 4444421 1478899999
Q ss_pred cccCccccccCH---HHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCC-CCccEEEEcCCCCCCCCC-CcEEEEE
Q 038499 241 ACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQT-DGYDAIFLSTHKFLGGPG-SPGILLM 311 (609)
Q Consensus 241 ~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~-~~~D~v~~S~hK~lggp~-g~G~L~~ 311 (609)
+|+||||.+.+. ++|+++|++|++++|+|++++... ....+..+.. .+..+++.|++|.+|.|+ .+|+++.
T Consensus 183 ~P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~iv~ 262 (403)
T PRK08636 183 FPHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGWRVGFVVG 262 (403)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccceeeeeeC
Confidence 999999999885 568889999999999999965321 1112222211 123355679999997553 5999999
Q ss_pred echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHEVIKKQEETYIER 390 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~~i~~~~~~l~~~ 390 (609)
++++ +..+... ......+++.+.+.+.. ..+.. ....+.+++..++.++.
T Consensus 263 ~~~l--i~~~~~~------------------------~~~~~~~~~~~~q~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 313 (403)
T PRK08636 263 NKKL--VGALKKI------------------------KSWLDYGMFTPIQVAAT---IALDGDQSCVEEIRETYRKRRDV 313 (403)
T ss_pred CHHH--HHHHHHH------------------------HHHhcccCChHHHHHHH---HHHhCcHHHHHHHHHHHHHHHHH
Confidence 8887 3322111 00011233333333221 11111 12244566667777788
Q ss_pred HHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhh
Q 038499 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470 (609)
Q Consensus 391 ~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ 470 (609)
+.+.|+.. ++.+..+ ..+.+.|.-.+ +.. ...+..+++..|.++.||.+.+|..|...
T Consensus 314 l~~~L~~~-~~~~~~p----~~g~~~~~~l~-~~~------------~~~~~~~l~~~ll~~~gV~v~pg~~f~~~---- 371 (403)
T PRK08636 314 LIESFANA-GWELQKP----RASMFVWAKIP-EPA------------RHLGSLEFSKQLLTEAKVAVSPGIGFGEY---- 371 (403)
T ss_pred HHHHHHHC-CCcccCC----CcceEEEEECC-Ccc------------CCCCHHHHHHHHHHhCCEEEecchhhCcC----
Confidence 88888776 5655443 33555555444 210 01235677766656679999988765311
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++||+++ .++++++..++.|+.+++.
T Consensus 372 -----------------------~~~~iRi~~~--~~~~~l~~~~~rl~~~l~~ 400 (403)
T PRK08636 372 -----------------------GDEYVRIALI--ENENRIRQAARNIKKFLKE 400 (403)
T ss_pred -----------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 1479999997 5889999999999888754
|
|
| >COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=197.64 Aligned_cols=335 Identities=19% Similarity=0.183 Sum_probs=235.6
Q ss_pred eEEecCCCCCCC-hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 78 LTYADHTASGRS-LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 78 ~vyld~~a~g~~-~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.+..|...|.. .+.+.+++.+.+..+..... .+..-.++.....++++.||+++|.+. .++|+ ||-.+++..+
T Consensus 42 ~nf~SNdYLGLa~~~~~~~a~~~~~~~~g~g~~--gsR~i~G~~~~h~~LE~~lA~f~g~e~--al~f~-SGy~AN~~~i 116 (388)
T COG0156 42 LNFCSNDYLGLASHPELIEAAKAAIRRYGVGAG--GSRLISGTSDLHVELEEELADFLGAEA--ALLFS-SGFVANLGLL 116 (388)
T ss_pred EeeeccCcccccCCHHHHHHHHHHHHHhCCCCC--CcCcccCCcHHHHHHHHHHHHHhCCCc--EEEEc-ccchhHHHHH
Confidence 334433333432 23477777777766422111 123334567889999999999999973 68886 8999877766
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC-Cce
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK-RPI 235 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~-~~~ 235 (609)
.... +++| .|+.....|.|.....+..+++++....+ |+++|++.|.+....+ +.+
T Consensus 117 ~~l~----------------~~~d--li~~D~lnHASiidG~rls~a~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~ 173 (388)
T COG0156 117 SALL----------------KKGD--LIFSDELNHASIIDGIRLSRAEVRRFKHN-----DLDHLEALLEEARENGARRK 173 (388)
T ss_pred HHhc----------------CCCc--EEEEechhhhhHHHHHHhCCCcEEEecCC-----CHHHHHHHHHhhhccCCCce
Confidence 5443 5677 89999999999999999999999999864 8999999998643222 468
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCC------CCCCccEEEEcCCCCCCCCCCcEEE
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSG------QTDGYDAIFLSTHKFLGGPGSPGIL 309 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~------~~~~~D~v~~S~hK~lggp~g~G~L 309 (609)
+|++..+.++.|.+.|+++|++++++||++++||+||+.|....+-... ....+|+++.++.|.||+-+ |++
T Consensus 174 ~IvtegVfSMdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAlGs~G--g~v 251 (388)
T COG0156 174 LIVTEGVFSMDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSG--GYI 251 (388)
T ss_pred EEEEeccccCCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhhcccC--cee
Confidence 9999999999999999999999999999999999999987654321111 11346899999999999443 788
Q ss_pred EEechhhc--cCCCCCCccCCCceEeecccccccccccccccccccCCCh-hHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 038499 310 LMTKALYQ--LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP-QVIQMIRAALAFWVKEYIGHEVIKKQEET 386 (609)
Q Consensus 310 ~~~~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp-~i~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (609)
..+..+.. ....+|. -+..+.| ...+...+++... + .....+++.++
T Consensus 252 ~g~~~~~d~L~~~ar~~--------------------------ifStalpP~~aaa~~~al~~l--~--~~~~~r~~L~~ 301 (388)
T COG0156 252 AGSAALIDYLRNRARPF--------------------------IFSTALPPAVAAAALAALRIL--E--EGPERRERLQE 301 (388)
T ss_pred eCcHHHHHHHHHhCCce--------------------------eccCCCCHHHHHHHHHHHHHH--H--hCHHHHHHHHH
Confidence 88877622 1111221 1112223 3333444555543 2 23456677778
Q ss_pred HHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh
Q 038499 387 YIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 387 l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
+..++++.++.. ++.+... ..+|+.+.+.+ .. ....+...|.++ ||.+.+-...+.|
T Consensus 302 ~~~~~~~~~~~~-~~~~~~s----~s~I~pv~~gd-~~----------------~a~~~s~~l~~~-Gi~v~~i~~PTVp 358 (388)
T COG0156 302 LAAFFRSLLKAL-GLVLLPS----ESPIIPVILGD-EE----------------RALEASRALLEE-GIYVSAIRPPTVP 358 (388)
T ss_pred HHHHHHHHHHhc-CCccCCC----CCCeeeeEeCC-HH----------------HHHHHHHHHHHC-CeeEeeecCCCCC
Confidence 888888666554 5544332 45788777776 22 366788888776 9999977665555
Q ss_pred hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 467 ~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.+ ...+|++++..+|++||+++++++.++
T Consensus 359 ~g--------------------------tarlRi~lta~ht~~~I~~l~~~l~~~ 387 (388)
T COG0156 359 KG--------------------------TARLRITLTAAHTEEDIDRLAEALSEV 387 (388)
T ss_pred CC--------------------------cceEEEEecCCCCHHHHHHHHHHHHhh
Confidence 32 367999999999999999999999875
|
|
| >COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=195.47 Aligned_cols=331 Identities=15% Similarity=0.082 Sum_probs=221.6
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
...++++.+++++|+.. .+.++|||. |+.+.+.+++ +.||| +||+++.++.+...+....
T Consensus 35 ~v~~FE~~~ae~~G~k~---ava~~sgT~-AL~laL~al~--------------ig~GD--eVI~ps~TfvATan~i~~~ 94 (374)
T COG0399 35 FVRRFEQAFAEYLGVKY---AVAVSSGTA-ALHLALLALA--------------IGPGD--EVIVPSFTFVATANAVLLV 94 (374)
T ss_pred HHHHHHHHHHHHhCCCe---EEEecChHH-HHHHHHHhcC--------------CCCCC--EEEecCCchHHHHHHHHHc
Confidence 46778899999999973 455546666 6888888776 58999 7999999999999999999
Q ss_pred CceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc
Q 038499 202 LAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID 280 (609)
Q Consensus 202 G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id 280 (609)
|+++++|++|+ ++.+|++.|+++|+ ++||.|+..| .-|...|+++|.++|++||+++|.|+||+.|...-+
T Consensus 95 Ga~PVFvDid~~T~nid~~~ie~aIt-----~~tKAIipVh---l~G~~~dm~~i~~la~~~~l~vIEDaAqa~Ga~y~g 166 (374)
T COG0399 95 GAKPVFVDIDPDTLNIDPDLIEAAIT-----PRTKAIIPVH---LAGQPCDMDAIMALAKRHGLPVIEDAAQAHGATYKG 166 (374)
T ss_pred CCeEEEEecCCcccCCCHHHHHHHcc-----cCCeEEEEeh---hccCCCCHHHHHHHHHHcCCeEEEEcchhccCeecC
Confidence 99999999997 58999999999999 6899887766 569999999999999999999999999999876554
Q ss_pred CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHH
Q 038499 281 VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI 360 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~ 360 (609)
-+.+....+-+++|-++|.++...| |+++.+++-. .++++....-|-... ....|.. .+.|...=+
T Consensus 167 k~vGt~Gd~~~fSF~~~K~ittgEG-Gav~tnd~el-a~k~~~lr~hG~~~~-------~~~~y~~-----~~~G~N~rm 232 (374)
T COG0399 167 KKVGSFGDIGAFSFHATKNLTTGEG-GAVVTNDEEL-AEKARSLRNHGLSRD-------AVFKYLH-----EELGYNYRL 232 (374)
T ss_pred cccccccceEEEEecCCCCccccCc-eEEEeCCHHH-HHHHHHHHHhCcCCC-------cccccee-----eecccccCH
Confidence 4433233344455556699986654 8888887652 112211111111100 0011111 112332112
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCC
Q 038499 361 QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPL 440 (609)
Q Consensus 361 ~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l 440 (609)
.-+.|++-+. +....+.+.++.+++++++.+.|++++++.+.......+.++..+.+.- . .+ ..
T Consensus 233 ~~iqAAigl~--QL~~l~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~-~------------~~-~~ 296 (374)
T COG0399 233 TEIQAAIGLA--QLERLDEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILV-D------------EE-GI 296 (374)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEe-c------------CC-CC
Confidence 2223333222 2334677888888999999999999988666544333333333333332 1 11 35
Q ss_pred ChHHHHHHHhhhcCcEeccCcccCC----h-hhhhhcC--CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHH
Q 038499 441 HGPFVATLLNDLFGIQARGGCACAG----P-YGHHLLD--LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513 (609)
Q Consensus 441 ~~~~v~~~L~~~~GI~v~~G~~ca~----p-~~~~ll~--i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ 513 (609)
+.+.+.+.|++. ||.. +..+.+ | |.+.... ...+.++.+ ....+++.++..++++|+++
T Consensus 297 ~R~~l~~~L~~~-gi~~--~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~-----------~~r~l~LP~~p~l~~~~~~~ 362 (374)
T COG0399 297 SRDALMESLKEA-GVGA--VVYFRPLHLQPAYRQLGYFPEGDLPNAEDL-----------SERILSLPLHPNLSEEDVDR 362 (374)
T ss_pred CHHHHHHHHHhC-CCCc--eEEeeccccchhhhcccccccCCCchHHHH-----------hhCeEEccCCCCCCHHHHHH
Confidence 778999999775 8882 222221 1 1111000 122333333 25789999999999999999
Q ss_pred HHHHHHHHHHh
Q 038499 514 TLEALEFIAIY 524 (609)
Q Consensus 514 ll~al~~v~~~ 524 (609)
++++|+++...
T Consensus 363 V~~~l~~~~~~ 373 (374)
T COG0399 363 VIEALKEVLGS 373 (374)
T ss_pred HHHHHHHHhcc
Confidence 99999998753
|
|
| >PRK02610 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=200.83 Aligned_cols=331 Identities=14% Similarity=-0.011 Sum_probs=209.2
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--------CCCCCcEEEeCC
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--------GGQEDAMIFCGS 147 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--------~~~~~~vift~s 147 (609)
.++.++.+... +.|+.+.+++.+.+.... +.. .| .. ....++|+.|+++++ .+++ +|++| +
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~Y-~~----~G~~~Lr~aia~~~~~~~~~~~~v~~~-~I~it-~ 98 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGI-ESN--RY-PD----GGHEALKQAIAEYVNESAAGSSQITPA-NISVG-N 98 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhcc-ccc--CC-CC----CchHHHHHHHHHHhCccccccCCCCHH-HEEEc-C
Confidence 35666655554 456778888877554310 000 11 11 114567788888877 5665 89988 8
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHh
Q 038499 148 GTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLE 226 (609)
Q Consensus 148 Gttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~ 226 (609)
|+++++..++.++. .+||. .|++..+.|+.+...++..|++++.++.++ ++.+|+++|+++++
T Consensus 99 Ga~~al~~~~~~~~---------------~~g~~-~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~ 162 (374)
T PRK02610 99 GSDELIRSLLIATC---------------LGGEG-SILVAEPTFSMYGILAQTLGIPVVRVGRDPETFEIDLAAAQSAIE 162 (374)
T ss_pred ChHHHHHHHHHHHc---------------CCCCC-eEEEcCCChHHHHHHHHHcCCEEEEecCCcccCCCCHHHHHHHHH
Confidence 99999987665542 45643 589999999999989999999999999876 46899999999986
Q ss_pred hhccCCCceEEEEecccCccccccCHHHHHHHHHH-hCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCC-
Q 038499 227 LYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG- 304 (609)
Q Consensus 227 ~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~-~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~- 304 (609)
+.. ..+++++++++++||||.+.+.+++.++++- +++++|+|+++..-.....+.......--+++.|++|.+|.|+
T Consensus 163 ~~~-~~~~k~i~l~~P~NPTG~~~s~~~l~~l~~~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~ivi~SfSK~~g~~Gl 241 (374)
T PRK02610 163 QTQ-NPPVRVVFVVHPNSPTGNPLTAAELEWLRSLPEDILVVIDEAYFEFSQTTLVGELAQHPNWVILRTFSKAFRLAAH 241 (374)
T ss_pred hhc-CCCceEEEEeCCCCCCCCCCCHHHHHHHHhccCCcEEEEeccccccCccchHHHHhcCCCEEEEEecchhccCccc
Confidence 310 1378999999999999999998776665532 4899999999753211111111111112367789999997664
Q ss_pred CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh-cCHHHHHHH
Q 038499 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY-IGHEVIKKQ 383 (609)
Q Consensus 305 g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~-~g~~~i~~~ 383 (609)
.+|+++.++++ ++.+.... ...+.+.+.+.+ +... +.+. ...+.++..
T Consensus 242 RiG~~v~~~~l--~~~l~~~~--------------------------~~~~~~~~~q~a--~~~~-l~~~~~~~~~~~~~ 290 (374)
T PRK02610 242 RVGYAIGHPEL--IAVLEKVR--------------------------LPYNLPSFSQLA--AQLA-LEHRQELLAAIPEI 290 (374)
T ss_pred ceeeeecCHHH--HHHHHHhc--------------------------CCCCCCHHHHHH--HHHH-hcCHHHHHHHHHHH
Confidence 59999998877 33321110 001222333322 1111 1111 112233333
Q ss_pred HHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCccc
Q 038499 384 EETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
.+.++.+.+.|+.++++.+. + ..+++.|...+ .. .+..++++.|. +.||.++.+
T Consensus 291 -~~~r~~l~~~L~~~~~~~~~-p----~~g~f~~~~l~-~~---------------~~~~~~~~~l~-~~gi~v~~~--- 344 (374)
T PRK02610 291 -LQERDRLYQALQELPQLRVW-P----SAANFLYLRLS-QD---------------AALAALHQALK-AQGTLVRHT--- 344 (374)
T ss_pred -HHHHHHHHHHHHhCCCcEeC-C----CcceEEEEeCC-CC---------------CCHHHHHHHHH-HCCEEEEeC---
Confidence 33366677888777777654 3 22344444333 11 35678888885 469998721
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
++++||+++ +.++++.++++|+++++..
T Consensus 345 -------------------------------~~~lRls~~---~~~~~~~~l~~l~~~l~~~ 372 (374)
T PRK02610 345 -------------------------------GGGLRITIG---TPEENQRTLERLQAALTQL 372 (374)
T ss_pred -------------------------------CCeEEEeCC---CHHHHHHHHHHHHHHHhhc
Confidence 378999997 5688999999998887643
|
|
| >PRK05367 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.4e-21 Score=220.10 Aligned_cols=309 Identities=16% Similarity=0.117 Sum_probs=220.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
.+.+.-+.+.+.++.+++++|.+.. ++.++ .++|++...++.++. ++++++..|++++.+|+++
T Consensus 115 isQG~Leal~~~Qt~la~LtG~~~a-naSl~-d~aTAa~ea~~~a~~--------------~~~~~~~~vlv~~~~hP~~ 178 (954)
T PRK05367 115 ISQGRLEALLNFQTMVADLTGLEIA-NASLL-DEATAAAEAMALAKR--------------VSKSKSNRFFVDDDVHPQT 178 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCChh-hcccc-ccHHHHHHHHHHhhh--------------hccCCCCEEEEcCccCHHH
Confidence 4556778889999999999999987 78888 567777777766553 3444122799999999999
Q ss_pred HHHHHH----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~~~~----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
...|+. .|++|+.++.+.+ ++ . +++ .+++.+..|.+|.+.|+++|+++||++|+++++|+
T Consensus 179 ~~v~~t~a~~~G~ev~~~~~~~d--~~--------~-----~~~-~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda 242 (954)
T PRK05367 179 LDVLRTRAEPLGIEVVVGDAAKA--LD--------H-----DDV-FGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAA 242 (954)
T ss_pred HHHHHHHHHhCCCEEEEecCccC--CC--------c-----ccE-EEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEe
Confidence 988753 6999999987542 11 1 344 44556667899999999999999999999999999
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCC-----CCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKF-----LGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~-----lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
.+.+.....+..++ |+|+++.+.||| +|||+ .|++++++++ .+.+++...|+..-..-++ ......+.
T Consensus 243 ~~~Al~~l~~pge~---GaDi~vgs~qkfg~P~g~GGP~-aGflavr~~~--~r~lpgrivG~s~d~~g~~-~~~lalqt 315 (954)
T PRK05367 243 DLLALTLLTPPGEM---GADIAVGSAQRFGVPMGFGGPH-AAYFAVRDAY--KRSMPGRIVGVSVDAAGNP-ALRLALQT 315 (954)
T ss_pred hhhhccCCCChhhc---CCCEEEeeCcccCCCCCCCCCC-EEEEEECHHH--HhhCCCCeeeeecccCCCc-cccccccc
Confidence 66444343444554 899999999999 78884 8999999998 5677766666532000000 00001122
Q ss_pred ccccccccCCChhHHHH--H---HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEec
Q 038499 346 EDIEERESGGTPQVIQM--I---RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIH 420 (609)
Q Consensus 346 ~~~~~r~~~gtp~i~~~--~---~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~ 420 (609)
.....|++.+|+|+... + .+++-.......|.+++.++...++.++.++|+. +|+++..+ .....+.+.+.
T Consensus 316 ReqhiRrekaTsNict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~-~G~~~~~~---~~f~~~~~~~~ 391 (954)
T PRK05367 316 REQHIRREKATSNICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRA-LGLEVVHD---SFFDTLTVEVG 391 (954)
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh-cCcccCCC---CCCCeEEEeCC
Confidence 22345677888877532 1 2222112235679999999999999999999977 58887654 23455555532
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRI 500 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRl 500 (609)
.+..++.+.|.+ .||.++.- .++.+|+
T Consensus 392 -------------------~~~~~i~~~l~~-~gi~~~~~---------------------------------~~~~l~i 418 (954)
T PRK05367 392 -------------------GDAAAVLARALA-AGINLRRV---------------------------------DDDHVGI 418 (954)
T ss_pred -------------------CCHHHHHHHHHH-CCceeccc---------------------------------cCCEEEE
Confidence 246789999976 59987510 1367999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 038499 501 SFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 501 s~~~~~t~eeid~ll~al~ 519 (609)
|++.++|++||+.++++|.
T Consensus 419 s~~e~~t~~did~l~~~l~ 437 (954)
T PRK05367 419 SLDETTTREDLAALLAVFG 437 (954)
T ss_pred EecccCCHHHHHHHHHHHc
Confidence 9999999999999999997
|
|
| >PLN02656 tyrosine transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=204.16 Aligned_cols=340 Identities=13% Similarity=0.027 Sum_probs=214.3
Q ss_pred ceEEecCCCC-----CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC------CCCCCcEEEe
Q 038499 77 RLTYADHTAS-----GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG------GGQEDAMIFC 145 (609)
Q Consensus 77 ~~vyld~~a~-----g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g------~~~~~~vift 145 (609)
+++-|.-+.. -++|+.+.+++.+.+..- ....|....+ ..++|+.++++++ .+++ +|++|
T Consensus 32 ~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~----~~~~Y~~~~G----~~~lr~~ia~~~~~~~g~~~~~~-~i~~t 102 (409)
T PLN02656 32 RVISLGMGDPTAYSCFHTTHVAQEAVVDALQSN----KFNGYAPTVG----LPQARRAIAEYLSRDLPYKLSLD-DVFIT 102 (409)
T ss_pred eeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcC----CCCCCCCCCC----CHHHHHHHHHHHHHhcCCCCCcc-cEEEe
Confidence 4555554443 356778888887766531 1101111112 3445556666553 3454 89998
Q ss_pred CChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHH
Q 038499 146 GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRS 223 (609)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~ 223 (609)
+|+++++..++.++ +++|| .|+++.+.|+.+...++..|++++.++++. ++.+|+++|++
T Consensus 103 -~G~~~al~~~~~~l---------------~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~ 164 (409)
T PLN02656 103 -SGCTQAIDVALSML---------------ARPGA--NILLPRPGFPIYELCAAFRHLEVRYVDLLPEKGWEVDLDAVEA 164 (409)
T ss_pred -CChHHHHHHHHHHH---------------hCCCC--eEEEeCCCCCcHHHHHHHcCCEEEEEeCCCcCCCCCCHHHHHH
Confidence 78888999888776 37888 699999999888777788899999999853 45799999999
Q ss_pred HHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEEcC
Q 038499 224 KLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFLST 296 (609)
Q Consensus 224 al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~S~ 296 (609)
+++ ++++++++++++||||.+.+ +++|+++|++||+++|+|++++.-. ....+........-+++.|+
T Consensus 165 ~~~-----~~~~~v~l~~P~NPtG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~Sf 239 (409)
T PLN02656 165 LAD-----QNTVALVIINPGNPCGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSL 239 (409)
T ss_pred Hhc-----cCceEEEEECCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEccc
Confidence 887 57899999999999999965 7788999999999999999976321 11111111111234677899
Q ss_pred CCCCCCCC-CcEEEEEec--------hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHH
Q 038499 297 HKFLGGPG-SPGILLMTK--------ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAAL 367 (609)
Q Consensus 297 hK~lggp~-g~G~L~~~~--------~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal 367 (609)
+|.++.|+ .+|++++++ ++ ++.+... .. ...+.+.+.+. ++
T Consensus 240 SK~f~~pGlRiG~~i~~~~~~~~~~~~~--~~~~~~~------------------------~~-~~~~~s~~~q~---a~ 289 (409)
T PLN02656 240 SKRWIVPGWRLGWFVTTDPSGSFRDPKI--VERIKKY------------------------FD-ILGGPATFIQA---AV 289 (409)
T ss_pred chhccCcceeEEEEEEeCcccccccHHH--HHHHHHH------------------------Hh-hhcCCCHHHHH---HH
Confidence 99977664 599999852 33 1111100 00 01122223332 22
Q ss_pred HHHHHH--hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHH
Q 038499 368 AFWVKE--YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFV 445 (609)
Q Consensus 368 ~~~~~~--~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v 445 (609)
..++.+ ....+..+++.++.++.+.+.|+.++++..... +..+++.|...+... -....+..++
T Consensus 290 ~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~---p~gg~~~w~~l~~~~-----------~~~~~~~~~~ 355 (409)
T PLN02656 290 PTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHK---PEGSMAVMVKLNLSL-----------LEDISDDIDF 355 (409)
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcC---CCeEEEEEEecchhh-----------cCCCCCHHHH
Confidence 222221 113455666777778888899987755432211 244555555433000 0000123344
Q ss_pred -HHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 446 -ATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 446 -~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++| .+.||.+++|..|. .++++||+++. ++++++..++.|+.++.+
T Consensus 356 ~~~~l-~~~gV~v~pg~~fg-----------------------------~~~~iRi~~~~--~~e~l~eal~rl~~~~~~ 403 (409)
T PLN02656 356 CFKLA-REESVIILPGTAVG-----------------------------LKNWLRITFAA--DPSSLEEALGRIKSFYLR 403 (409)
T ss_pred HHHHH-HhCCEEEecchhcC-----------------------------CCCeEEEEeCC--CHHHHHHHHHHHHHHHHH
Confidence 4555 55799999887653 14899999983 788888888888887754
|
|
| >PLN02452 phosphoserine transaminase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-20 Score=199.16 Aligned_cols=335 Identities=13% Similarity=0.129 Sum_probs=226.5
Q ss_pred CCChHHHHHHHHHhhcCCccC--CCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 87 GRSLRYIENYIINNVLPFYGN--THTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n--~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
...|+.|++++.+.+..+-+. ...+.++.+..+.+++.++++.++++++.+.+.+|+|..+|+|.++.++..-+
T Consensus 16 ~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl---- 91 (365)
T PLN02452 16 ATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNL---- 91 (365)
T ss_pred CCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhc----
Confidence 456789999998877654211 11123456677889999999999999998655567666556666787776654
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCCCC---CCCHHHHHHHHhhhccCCCceEEEE
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDDDG---LLDIEALRSKLELYKDAKRPILGSF 239 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~g---~ld~e~L~~al~~~~~~~~~~lv~~ 239 (609)
+++|++ +++-.....+.. ..++..|...+.....+.+ .++++++ +.+ ++...+.+
T Consensus 92 -----------~~~~~~--~l~~~~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~v~~ 151 (365)
T PLN02452 92 -----------CKPGDK--ADFVVTGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEW----ELT---PDAKFVHI 151 (365)
T ss_pred -----------CCCCCe--EEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHc----CCC---CCCcEEEE
Confidence 467775 333333333322 2345567644444222222 4566664 211 46789999
Q ss_pred ecccCccccc-cCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhcc
Q 038499 240 SACSNVTGIY-SDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQL 318 (609)
Q Consensus 240 s~~sn~TG~~-~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l 318 (609)
+|+.+.||+. .|++++.+ +++++|+++++++.++|+.++ + ++++|.||.+| |.|+|++++++++ +
T Consensus 152 ~hnETstGv~~~~~~~i~~------~~lvVDa~Ss~g~~pidv~~~---~--v~~~saqK~lG-P~Gl~~v~vr~~~--l 217 (365)
T PLN02452 152 CANETIHGVEFKDYPDVGN------VPLVADMSSNFLSKPVDVSKY---G--VIYAGAQKNVG-PSGVTIVIIRKDL--I 217 (365)
T ss_pred CCCCCCCcEecCcccccCC------CeEEEECCccccCcccCHHHc---C--EEEEecccccC-CCCeEEEEEcHHH--H
Confidence 9999999994 88887753 899999999999999999876 4 45579999996 9999999999999 5
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR--AALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
.+..+..+. ...+ ..+. +.....+||++..+.. ++++++. +..|.+.+.++++++++++++.|+
T Consensus 218 ~~~~~~~~~--~~~~--------~~~~---~~~s~~~TP~v~~i~~l~~aL~~l~-~~gGl~~~~~r~~~~a~~l~~~l~ 283 (365)
T PLN02452 218 GNARPITPG--MLDY--------KIHA---ENDSLYNTPPCFGIYMCGLVFEDLL-AQGGLKAMEKRNIRKADLLYDAID 283 (365)
T ss_pred hhcccCCCc--hhhH--------HHHH---hcCCccCChhHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHHHHH
Confidence 554332111 1000 0001 1123347998877654 4555442 334899999999999999999999
Q ss_pred CCCceEEeCC-CC-C-CCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcC
Q 038499 397 PNQNIKILGN-TS-T-KRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 397 ~~p~i~v~~~-~~-~-~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~ 473 (609)
+.+|+ +.+ .+ . .+..+++|.+.. .. ....+.+.+.+ .|+..-.| |+.
T Consensus 284 ~~~G~--y~~~~~~~~rs~~~vsF~~~~-~~----------------~~~~f~~~~~~-~g~~~~~G--------~r~-- 333 (365)
T PLN02452 284 ESNGF--YVCPVEKSVRSLMNVPFTLGG-SE----------------LEAEFVKEAAK-AGMVQLKG--------HRS-- 333 (365)
T ss_pred hCCCc--ccCCCChHHhCCeEEEEEcCC-ch----------------hHHHHHHHHHH-CCCcccCC--------ccc--
Confidence 88777 222 11 1 244588888765 21 34577777754 69877654 322
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
-|.+|+|+-..++.++++.|++.|++..++
T Consensus 334 ---------------------~gg~R~s~yna~~~~~v~~L~~~m~~f~~~ 363 (365)
T PLN02452 334 ---------------------VGGMRASIYNAMPLAGVEKLVAFMKDFQAK 363 (365)
T ss_pred ---------------------cCceEEECcCCCCHHHHHHHHHHHHHHHHh
Confidence 133999998889999999999999987654
|
|
| >PRK03317 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.6e-21 Score=202.88 Aligned_cols=324 Identities=16% Similarity=0.085 Sum_probs=213.4
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----C--CCCCCcEEEeCChHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----G--GGQEDAMIFCGSGTT 150 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g--~~~~~~vift~sGtt 150 (609)
.+.|+.+... +.++.+.+++.+.+.....+.. .| ...+ ..++|+.+++++ | .+++ +|++| +|++
T Consensus 28 ~i~l~~~~~~~~~~~~~~~al~~~l~~~~~~~~--~Y-~~~g----~~~lr~aia~~~~~~~~~~~~~~-~I~it-~G~~ 98 (368)
T PRK03317 28 PVRLNTNENPYPPSPALVADIAEAVAEAAAGLN--RY-PDRD----AVALRADLAAYLTAQTGVGLTVE-NVWAA-NGSN 98 (368)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHhhhhhhhc--cC-CCCc----hHHHHHHHHHHhhhhccCCCChh-hEEEC-CCHH
Confidence 4556655433 4667788888776542111111 11 1111 345666666666 4 5565 88888 8999
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc
Q 038499 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~ 230 (609)
+++..++.++. ++|| .|++..+.|+.+...++..|++++.++.++++.+|++++++++.+
T Consensus 99 ~~l~~~~~~~~---------------~~gd--~v~v~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~~--- 158 (368)
T PRK03317 99 EILQQLLQAFG---------------GPGR--TALGFVPSYSMHPIIARGTHTEWVEGPRAADFTLDVDAAVAAIAE--- 158 (368)
T ss_pred HHHHHHHHHhc---------------CCCC--EEEEeCCChHHHHHHHHhcCCeeEEcccCCCCCCCHHHHHHHHhc---
Confidence 99999988873 7888 688899999988888888899999998776778999999999974
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc-cc-ccCCCC-CCCCccEEEEcCCCCCCCC-CCc
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY-VE-IDVRSG-QTDGYDAIFLSTHKFLGGP-GSP 306 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~-~~-id~~~~-~~~~~D~v~~S~hK~lggp-~g~ 306 (609)
.+++++++++++||||.+.+.+++.++++.+++++|+|++++... .. ...... ......+++.|++|.+|.| ..+
T Consensus 159 -~~~~~i~l~~p~NPtG~~~~~~~l~~l~~~~~~~lI~DE~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~GlRi 237 (368)
T PRK03317 159 -HRPDVVFLTSPNNPTGTALPLDDVEAILDAAPGIVVVDEAYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGGRL 237 (368)
T ss_pred -cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHCCceEEEeCCchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchhhh
Confidence 468888999999999999999999999999999999999977421 11 000000 0012235667999999854 358
Q ss_pred EEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHHHHhcCHHHHHHHHH
Q 038499 307 GILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 307 G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~~~g~~~i~~~~~ 385 (609)
|++++++++ ++.+.... ...+.+.+.+.+ .+++. +........++.+
T Consensus 238 G~~~~~~~~--~~~l~~~~--------------------------~~~~~s~~~~~a~~~~l~----~~~~~~~~~~~~~ 285 (368)
T PRK03317 238 GYLAAAPAV--VDALRLVR--------------------------LPYHLSAVTQAAARAALR----HADELLASVAALR 285 (368)
T ss_pred hhhhCCHHH--HHHHHhcC--------------------------CCCCCCHHHHHHHHHHhh----CHHHHHHHHHHHH
Confidence 999998887 33321110 001122222221 12221 1111222334456
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
+.++++.+.|+.. ++.+..+ ..+++.|.... +...+.+.|.+ .||.+++. .
T Consensus 286 ~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-------------------~~~~~~~~l~~-~Gv~v~~~---~- 336 (368)
T PRK03317 286 AERDRVVAWLREL-GLRVAPS----DANFVLFGRFA-------------------DRHAVWQGLLD-RGVLIRDV---G- 336 (368)
T ss_pred HHHHHHHHHHHHC-CCEeCCC----CCcEEEEeccC-------------------CHHHHHHHHHH-CCEEEEeC---C-
Confidence 6677788888776 6766544 23444432222 35678888865 69999832 1
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++++||+++ +.+++++++++|+++..
T Consensus 337 ----------------------------~~~~iRi~~~---~~~~~~~~~~~l~~~~~ 363 (368)
T PRK03317 337 ----------------------------IPGWLRVTIG---TPEENDAFLAALAEVLA 363 (368)
T ss_pred ----------------------------CCCeEEEecC---CHHHHHHHHHHHHHHHH
Confidence 1489999987 78999999999998864
|
|
| >PRK04781 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.5e-21 Score=202.44 Aligned_cols=292 Identities=16% Similarity=0.055 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccchHHHHHHc
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
..++|+.+++++|++++ +|++| +|++++|..++..+. .+| + .|+++++.|..+...++..
T Consensus 61 ~~~lr~~ia~~~~~~~~-~I~~t-~G~~~~l~~~~~~~~---------------~~g~~--~vlv~~p~y~~~~~~~~~~ 121 (364)
T PRK04781 61 PPGLRSALAALYGCAPE-QLLIG-RGSDEAIDLLVRALC---------------VPGRD--AVLVTPPVFGMYAVCARLQ 121 (364)
T ss_pred HHHHHHHHHHHhCcChH-HEEEe-CCHHHHHHHHHHHhc---------------CCCCC--eEEEcCCChHHHHHHHHHc
Confidence 35789999999999886 89998 899999999988763 677 5 6888888777666666788
Q ss_pred CceEEEEecCC--C-CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHH--hCCeEEEeccccCCc
Q 038499 202 LAEVVEIGLDD--D-GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPY 276 (609)
Q Consensus 202 G~~vv~v~~~~--~-g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~--~g~~vivD~A~~~~~ 276 (609)
|++++.++++. + ..+|++++.+++.. ++++++++++++||||.+.|.+++.++++. +++++|+|+++....
T Consensus 122 g~~~~~v~~~~~~~~~~~d~~~l~~~~~~----~~~~lv~l~~p~NPTG~~~~~~~~~~l~~~~~~~~~iI~Deay~~f~ 197 (364)
T PRK04781 122 NAPLVEVPLVDGADGFHADVPAIVAAALA----SNAKLVFLCSPSNPAGSAIALDQIERALQALQGKALVVVDEAYGEFS 197 (364)
T ss_pred CCEEEEEecCCCccCCCcCHHHHHHHHhc----cCCeEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCcchhhc
Confidence 99999999842 3 35789998766543 579999999999999999999988888875 478999999965321
Q ss_pred ccccCCC-CCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRS-GQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~-~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
....... .....--+++.|++|.+|-| ..+|++++++++ ++.+.... . ..
T Consensus 198 ~~~~~~~~~~~~~~vi~~~SfSK~~gl~GlRvGy~v~~~~l--~~~l~~~~------------------------~--~~ 249 (364)
T PRK04781 198 DVPSAVGLLARYDNLAVLRTLSKAHALAAARIGSLIANAEL--IAVLRRCQ------------------------A--PY 249 (364)
T ss_pred CCcchHHHHhhCCCEEEEecChhhcccccceeeeeeCCHHH--HHHHHhcc------------------------C--CC
Confidence 1111100 00112246778999999844 459999999888 33332110 0 01
Q ss_pred CChhHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCC
Q 038499 355 GTPQVIQMIRAALAFWVKEY--IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENT 432 (609)
Q Consensus 355 gtp~i~~~~~aal~~~~~~~--~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~ 432 (609)
+...+.+. ++..++ .+. .......++.++.++.+.+.|+.++++....+. . +++.|...+
T Consensus 250 ~~~~~~~~--~a~~~l-~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~---~-g~f~~~~~~----------- 311 (364)
T PRK04781 250 PVPTPCAA--LAEQAL-SAPALAVTARRVAEVRAERERLHAALAQLPGVRRVYPS---Q-GNFLLVRFD----------- 311 (364)
T ss_pred CCCHHHHH--HHHHHH-hcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeECCC---C-CcEEEEEcC-----------
Confidence 12222222 222222 111 112233345566778888999888776423331 2 344443333
Q ss_pred CCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHH
Q 038499 433 KTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512 (609)
Q Consensus 433 ~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid 512 (609)
+..++.+.|.+ .||.+++|..+.+ .++++||+++ +.++.+
T Consensus 312 --------~~~~~~~~l~~-~gI~v~~~~~~~~----------------------------~~~~~Ris~~---~~~~~~ 351 (364)
T PRK04781 312 --------DAEAAFQALLA-AGVVVRDQRAAPR----------------------------LSDALRITLG---TPEQND 351 (364)
T ss_pred --------CHHHHHHHHHH-CCeEEeeCCCCCC----------------------------CCCeEEEeCC---CHHHHH
Confidence 24677788854 6999998754321 1479999998 899999
Q ss_pred HHHHHHHHHHH
Q 038499 513 FTLEALEFIAI 523 (609)
Q Consensus 513 ~ll~al~~v~~ 523 (609)
+++++|+.+.+
T Consensus 352 ~l~~al~~~~~ 362 (364)
T PRK04781 352 RVLAALQRTQA 362 (364)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
|
|
| >TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4e-21 Score=201.40 Aligned_cols=276 Identities=20% Similarity=0.161 Sum_probs=192.0
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc
Q 038499 124 HEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA 203 (609)
Q Consensus 124 ~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (609)
.++|+.+++++|.+++ +|++| +|+++++..+..++ .+|+ |++..+.|+.+...++..|+
T Consensus 50 ~~lr~~la~~~~~~~~-~i~~t-~G~~~~i~~~~~~l----------------~~g~---vl~~~p~y~~~~~~~~~~g~ 108 (330)
T TIGR01140 50 DELRAAAAAYYGLPAA-SVLPV-NGAQEAIYLLPRLL----------------APGR---VLVLAPTYSEYARAWRAAGH 108 (330)
T ss_pred HHHHHHHHHHhCCChh-hEEEC-CCHHHHHHHHHHHh----------------CCCe---EEEeCCCcHHHHHHHHHcCC
Confidence 6789999999998776 89998 89999998876654 4553 77778889998888999999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCccccc
Q 038499 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVEID 280 (609)
Q Consensus 204 ~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~id 280 (609)
+++.++ |+++|++++. +++++++++|+||||.+.| +++|+++|++||+++|+|+++.......+
T Consensus 109 ~~~~~~-------d~~~l~~~~~------~~~~v~i~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~ 175 (330)
T TIGR01140 109 EVVELP-------DLDRLPAALE------ELDVLVLCNPNNPTGRLIPPETLLALAARLRARGGWLVVDEAFIDFTPDAS 175 (330)
T ss_pred EEEEeC-------CHHHHHhhcc------cCCEEEEeCCCCCCCCCCCHHHHHHHHHHhHhcCCEEEEECcccccCCccc
Confidence 999987 7899988875 4678899999999999999 55678888999999999999763321112
Q ss_pred CCCC-CCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 281 VRSG-QTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 281 ~~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
+... ...+.++++.|++|++|.| .++|++++++++ ++.+.+... ..+.+
T Consensus 176 ~~~~~~~~~~~i~~~S~SK~~g~~G~R~G~i~~~~~~--~~~l~~~~~---------------------------~~~~s 226 (330)
T TIGR01140 176 LAPQAARFPGLVVLRSLTKFFGLAGLRLGFVVAHPAL--LARLREALG---------------------------PWTVN 226 (330)
T ss_pred hhhHhccCCCEEEEEecchhhcCchhhhhheeCCHHH--HHHHHhcCC---------------------------CCCch
Confidence 2111 1124468899999999855 348999999887 333322210 01111
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK 438 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (609)
..+ ..++..++ ++....+.++++.+++++++.+.|++++.+++..+ .+.+.+.-.+
T Consensus 227 ~~~-q~~~~~~l-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-----~~~f~~~~~~----------------- 282 (330)
T TIGR01140 227 GPA-RAAGRAAL-ADTAWQAATRARLAAERARLAALLARLGGLEVVGG-----TALFLLVRTP----------------- 282 (330)
T ss_pred HHH-HHHHHHHH-hchHHHHHHHHHHHHHHHHHHHHHHhCCCceECCC-----CCeEEEEEcC-----------------
Confidence 111 12222222 22222356778888899999999998866666432 2344333332
Q ss_pred CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 439 PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 439 ~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
+..++.+.|.+ .||.+++|..+.+. .++++||+++ ...++ ++++.+|
T Consensus 283 --~~~~l~~~l~~-~gi~v~pg~~f~~~---------------------------~~~~iRi~~~--~~~~~-~~~~~~l 329 (330)
T TIGR01140 283 --DAAALHEALAR-RGILIRDFDNFPGL---------------------------DPRYLRFALP--TDEEN-DRLEEAL 329 (330)
T ss_pred --CHHHHHHHHHH-CCEEEEECCCCCCC---------------------------CCCEEEEEec--CHHHH-HHHHHhh
Confidence 34678888876 59999998765310 1479999997 23344 8888876
Q ss_pred H
Q 038499 519 E 519 (609)
Q Consensus 519 ~ 519 (609)
+
T Consensus 330 ~ 330 (330)
T TIGR01140 330 A 330 (330)
T ss_pred C
Confidence 3
|
This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella. |
| >PRK03967 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-20 Score=198.54 Aligned_cols=201 Identities=13% Similarity=0.082 Sum_probs=150.8
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
..++|+.+... +.++.+.+++.+.+... +.+ .|. . ....++|+++++++|.+++ +|++| +|+++++..
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~--~~~--~Y~-~----~g~~~lr~~ia~~~~~~~~-~I~~t-~G~~~~l~~ 87 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKRV--PFN--RYP-H----ITSDPLREAIAEFYGLDAE-NIAVG-NGSDELISY 87 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhcC--ccc--cCC-C----CCHHHHHHHHHHHhCcCcc-eEEEc-CCHHHHHHH
Confidence 67899988866 56678888887766421 111 111 0 1246789999999998886 89998 899999987
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++..+ +|| .|+++.+.|+.+...++..|++++.++.+.++.+|++++++++. +++
T Consensus 88 ~~~~~-----------------~gd--~V~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~------~~~ 142 (337)
T PRK03967 88 LVKLF-----------------EGK--HIVITPPTFGMYSFYAKLNGIPVIDVPLKEDFTIDGERIAEKAK------NAS 142 (337)
T ss_pred HHHHh-----------------CCC--eEEEeCCChHHHHHHHHHcCCeEEEeecCCCCCcCHHHHHHhcc------CCC
Confidence 76542 577 69999999987766778899999999998777899999987643 678
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCC-CCCCccEEEEcCCCCCCCC-CCcEEEEEec
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSG-QTDGYDAIFLSTHKFLGGP-GSPGILLMTK 313 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~~~ 313 (609)
++++++|+||||.+.+.++|.++++ +++++|+|+++..-. ...+... ....--+++.|++|.+|.| ..+|++++++
T Consensus 143 ~v~~~~P~NPtG~~~~~~~l~~i~~-~~~~ii~De~y~~~~-~~~~~~~~~~~~~vi~l~S~SK~~~l~GlRiG~iv~~~ 220 (337)
T PRK03967 143 AVFICSPNNPTGNLQPEEEILKVLE-TGKPVVLDEAYAEFS-GKSLIGLIDEYPNLILLRTFSKAFGLAGIRAGYAIANE 220 (337)
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHh-cCCEEEEECchhhhc-ccchHHHHhhCCCEEEEecchHhhcchhhhheeeecCH
Confidence 8889999999999999999999995 799999999975321 1011000 0012246778999999844 4599999988
Q ss_pred hh
Q 038499 314 AL 315 (609)
Q Consensus 314 ~~ 315 (609)
++
T Consensus 221 ~~ 222 (337)
T PRK03967 221 EI 222 (337)
T ss_pred HH
Confidence 77
|
|
| >PRK05968 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-21 Score=206.69 Aligned_cols=307 Identities=17% Similarity=0.147 Sum_probs=208.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW- 198 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (609)
.....++++.+++++|++. .++++ +|+. ++..++..+ +++|| .|+++...|+++...|
T Consensus 62 ~p~~~~le~~lA~l~g~~~--av~~~-sG~~-Ai~~al~al---------------~~~Gd--~Vl~~~~~y~~t~~~~~ 120 (389)
T PRK05968 62 NPTVRAFEEMLAKLEGAED--ARGFA-SGMA-AISSTVLSF---------------VEPGD--RIVAVRHVYPDAFRLFE 120 (389)
T ss_pred ChhHHHHHHHHHHHhCCCc--EEEEC-CHHH-HHHHHHHHH---------------hCCCC--EEEEeCCCchHHHHHHH
Confidence 3447889999999999963 46664 8875 666655544 47899 6888888998766444
Q ss_pred ---HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 199 ---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 199 ---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
...|++++.++.+ |++++++++. ++++|++++++|+++.+.|+++|+++||+||+++++|++++.+
T Consensus 121 ~~~~~~G~~v~~vd~~-----d~~~l~~~i~------~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~ 189 (389)
T PRK05968 121 TILKRMGVEVDYVDGR-----DEEAVAKALP------GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASP 189 (389)
T ss_pred HHHHHcCceEEEeCCC-----CHHHHHHhcc------cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcch
Confidence 4569999998754 8899988874 5899999999999999999999999999999999999998876
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
.....+. .++|++++|+||+++||++ .|+++.++++ ++.+..... ...
T Consensus 190 ~~~~p~~----~g~Divv~S~tK~l~g~~~~~gG~i~~~~~~--~~~l~~~~~------------------------~~~ 239 (389)
T PRK05968 190 VFQRPIT----LGVDLVIHSASKYLGGHSDTVAGVVAGSKEH--IARINAEAY------------------------PYL 239 (389)
T ss_pred hccCchh----cCCcEEEeeccccccCCCCeEEEEEEECHHH--HHHHHHHHH------------------------HhC
Confidence 4322221 2789999999999999865 6888888776 222211100 000
Q ss_pred CCC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeC-CCC--------CCCcceEEEEeccCC
Q 038499 354 GGT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILG-NTS--------TKRQAILSFNIHSST 423 (609)
Q Consensus 354 ~gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~-~~~--------~~r~~~~~f~~~~~~ 423 (609)
.+. ..+.+ ++. +..........++..+.++++.+.|+++|+++.+. |.- ....++++|.+.+ +
T Consensus 240 g~~~~~~~A----~~~--l~~L~tl~~r~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~-~ 312 (389)
T PRK05968 240 GAKLSPFEA----WLL--LRGLRTLPLRMKAHEASALEIARRLKAHPVVERVCHPALANHPPAGLSGTSGLFSFIFRE-G 312 (389)
T ss_pred CCCCChHHH----HHH--HcccCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCChHHhCCCCceEEEEEECC-H
Confidence 111 11111 111 11222445556666777999999999999985443 310 0235688888764 2
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC--ChhhhhhcCCC-hhHHHHHHHHHhhCCCCCCCcEEEE
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA--GPYGHHLLDLD-EAQSYQIRSAIQKGYVGVKPGWTRI 500 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca--~p~~~~ll~i~-~~~~~~~~~~~~~~~~~~~~g~iRl 500 (609)
.+...+++.| +.+++.++.|..|+ .|......... .+.. ...|+.++.||+
T Consensus 313 ----------------~~~~~f~~~L-~~~~~~~s~G~~~slv~p~~~~~~~~~~~~~~---------~~~gi~~~liR~ 366 (389)
T PRK05968 313 ----------------IDVRAFADAL-KLFRLGVSWGGHESLVVPAEVVLQQKAQPNSA---------ARFGVSPRSVRL 366 (389)
T ss_pred ----------------HHHHHHHHhC-CccEEecCCCCCCceeeeCcccccccCCHHHH---------HhcCCCCCeEEE
Confidence 3567888888 56899999998877 12211111111 1110 013456799999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 038499 501 SFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 501 s~~~~~t~eeid~ll~al~~v 521 (609)
|++++++++=++.+.++|+.+
T Consensus 367 SvGlE~~~dl~~dl~~al~~~ 387 (389)
T PRK05968 367 HVGLEGTEALWADLEQALAAA 387 (389)
T ss_pred EeccCCHHHHHHHHHHHHHHh
Confidence 999988777777777777643
|
|
| >PRK08776 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.2e-21 Score=203.86 Aligned_cols=308 Identities=15% Similarity=0.135 Sum_probs=197.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH--
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW-- 198 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (609)
...+++++.++++.|++ +.+++ ++|+ +++..++..+ +++|| .|+++.+.|+.....+
T Consensus 60 p~~~~Le~~lA~l~g~~--~~v~~-~sG~-~Ai~~~l~al---------------l~pGD--~Vvv~~p~Y~~t~~~~~~ 118 (405)
T PRK08776 60 PTRDLLGEALAELEGGA--GGVIT-ATGM-GAINLVLNAL---------------LQPGD--TLVVPHDAYGGSWRLFNA 118 (405)
T ss_pred hHHHHHHHHHHHHhCCC--ceEEE-cCHH-HHHHHHHHHH---------------hCCCC--EEEEccCCchHHHHHHHH
Confidence 34667889999999974 25555 4785 6888887766 47999 6888888888754433
Q ss_pred --HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 199 --RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 199 --~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
...|.+++.++. .|+++|+++++ ++++++++++++||||.+.|+++|+++||++|+++++|++++.+.
T Consensus 119 ~~~~~g~~v~~v~~-----~d~~~l~~~i~-----~~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~ 188 (405)
T PRK08776 119 LAKKGHFALITADL-----TDPRSLADALA-----QSPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPA 188 (405)
T ss_pred HHHhcCcEEEEECC-----CCHHHHHHhcC-----cCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 335788888865 38899999987 589999999999999999999999999999999999999988765
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
....+. .++|++++|+||+++|+++ .|+++.+++.. .+++... .....
T Consensus 189 ~~~pl~----~gaDivv~S~tK~l~g~~~~~~G~vv~~~~~l-~~~l~~~-------------------------~~~~g 238 (405)
T PRK08776 189 LQKPLE----FGADLVLHSTTKYINGHSDVVGGAVVARDAEL-HQQLVWW-------------------------ANALG 238 (405)
T ss_pred cCCccc----ccCCEEEecCceeecCCCCceEEEEEeCCHHH-HHHHHHH-------------------------HHhcC
Confidence 432222 2789999999999998865 57777754331 1121100 00001
Q ss_pred CChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcceEEEEec
Q 038499 355 GTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAILSFNIH 420 (609)
Q Consensus 355 gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~~f~~~ 420 (609)
.+++.... .+.. ......+...++..+++..+.+.|+++|.+. |.-|.- ....++++|.+.
T Consensus 239 ~~~s~~~a---~l~~--~gl~tl~~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 313 (405)
T PRK08776 239 LTGSPFDA---FLTL--RGLRTLDARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELE 313 (405)
T ss_pred CCCCHHHH---HHHH--hhhCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEc
Confidence 11221111 1111 1222456667788888999999999998875 443321 123568888876
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
. +. .....+.+.| +.+.+.+.-|...+ .|.......+.++... ..|+.++.
T Consensus 314 ~-~~---------------~~~~~f~~~l-~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~---------~~gi~~~l 367 (405)
T PRK08776 314 G-GE---------------AAVRAFVDGL-RYFTLAESLGGVESLIAHPASMTHAAMTAEARA---------AAGISDGL 367 (405)
T ss_pred C-CH---------------HHHHHHHHhC-CcceEccCCCCCceEEECCcccccccCCHHHHH---------hcCCCCCe
Confidence 4 21 1123455555 44555565554322 1221111122221111 14667899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 038499 498 TRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al~~ 520 (609)
||||++.-..++=++.+-++|+.
T Consensus 368 iR~svGlE~~~dli~dl~~al~~ 390 (405)
T PRK08776 368 LRLSVGIESAEDLLIDLRAGLAR 390 (405)
T ss_pred EEEEeCcCCHHHHHHHHHHHHHH
Confidence 99999976554445555555544
|
|
| >PRK08133 O-succinylhomoserine sulfhydrylase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-21 Score=204.05 Aligned_cols=306 Identities=19% Similarity=0.152 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW- 198 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (609)
....+++++.+++++|++ .++++++|+. |+..++..+ +++|| .|++++..|.+....+
T Consensus 60 ~p~~~~le~~la~l~g~~---~~v~~ssG~~-Ai~~al~al---------------~~~Gd--~Vi~~~~~y~~t~~~~~ 118 (390)
T PRK08133 60 NPTVTMFQERLAALEGAE---ACVATASGMA-AILAVVMAL---------------LQAGD--HVVSSRSLFGSTVSLFE 118 (390)
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEECCHHH-HHHHHHHHH---------------hCCCC--EEEEccCcchhHHHHHH
Confidence 455788999999999985 3566646654 666665554 47898 6999999998876544
Q ss_pred ---HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 199 ---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 199 ---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
+..|++++.++.+ |+++++++++ ++|++|++++++||||.+.|+++|+++||+||+++++|++++.+
T Consensus 119 ~~~~~~G~~v~~vd~~-----d~~~l~~~i~-----~~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~ 188 (390)
T PRK08133 119 KIFARFGIETTFVDLT-----DLDAWRAAVR-----PNTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTP 188 (390)
T ss_pred HHHHHcCcEEEEECCC-----CHHHHHHhcC-----cCCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4579999999864 7899999997 68999999999999999999999999999999999999998766
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC-c-EEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS-P-GILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~-G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
.....+. .++|+++.|+||+++|++. . |+++.+++. +..+... .+..
T Consensus 189 ~~~~pl~----~g~Divv~S~sK~~~g~g~~~GG~vv~~~~~--~~~~~~~-------------------------~~~~ 237 (390)
T PRK08133 189 ALQQPLK----LGADVVIHSATKYLDGQGRVLGGAVVGSKEL--MEEVFGF-------------------------LRTA 237 (390)
T ss_pred ccCCchh----hCCcEEEeecceeecCCcceEeEEEEcCHHH--HHHHHHH-------------------------HHHh
Confidence 4433221 2679999999999997653 3 777777765 2222110 0000
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCcceEEEEe
Q 038499 354 GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQAILSFNI 419 (609)
Q Consensus 354 ~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~~~~~f~~ 419 (609)
..+.+-.. +.+.+ .....+....++..+.+..+.+.|++.|++. ++-|. + ....++++|.+
T Consensus 238 g~~~~~~~---a~~~l--~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l 312 (390)
T PRK08133 238 GPTLSPFN---AWVFL--KGLETLSLRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEV 312 (390)
T ss_pred CCCCCHHH---HHHHH--cccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEE
Confidence 11111111 11111 1111244445566677888889999888875 33332 1 12356888887
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
.. +. -....+.+.| +.+.+.+.-|..-+ .|+......+..+... ..|+.++
T Consensus 313 ~~-~~---------------~~~~~f~~~l-~l~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~ 366 (390)
T PRK08133 313 KG-GR---------------EAAWRVIDAT-RLISITANLGDTKTTITHPATTTHGRLSPEARA---------AAGITEG 366 (390)
T ss_pred cC-CH---------------HHHHHHHHhC-CcceEeccCCCcceeeecCCCCCcccCCHHHHH---------hcCCCCC
Confidence 64 21 1233455555 45555555553211 1322221222222111 1466789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 497 WTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.||||++.- +.+.+++-|+..+
T Consensus 367 liR~svGlE----~~~dl~~dl~~al 388 (390)
T PRK08133 367 LIRVAVGLE----DVADIKADLARGL 388 (390)
T ss_pred eEEEEeCcC----CHHHHHHHHHHHh
Confidence 999999964 4555555555443
|
|
| >PRK05839 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=200.28 Aligned_cols=330 Identities=14% Similarity=0.072 Sum_probs=204.4
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal 153 (609)
+++.++.+... +.++.+.+++.+....... |....+..++++.+.+++++..| .+++ +|++| +|+++++
T Consensus 25 ~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~~------Y~~~~G~~~lr~aia~~l~~~~g~~~~~~-~I~it-~G~~~al 96 (374)
T PRK05839 25 KGLDLTIGEPQFETPKFIQDALKNNAHLLNK------YPKSAGEESLREAQRGFFKRRFKIELKEN-ELIPT-FGTREVL 96 (374)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHhhccCC------CCCCCCCHHHHHHHHHHHHHHhCCCCCcc-eEEEe-cCcHHHH
Confidence 45566544332 3456677777654322111 11112234555566666666667 4555 89998 8999999
Q ss_pred HHHHHHhcccchhhHHHHHHhhh-cCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhhcc
Q 038499 154 KRLQEVMGIAVPSILREKLIKCL-RDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELYKD 230 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l-~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~~~ 230 (609)
..++.++. . ++|| .|+++.+.|+.+...++..|++++.++.+.+ ..+|+++. .+
T Consensus 97 ~~~~~~~~--------------~~~~gd--~vlv~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~~--~~----- 153 (374)
T PRK05839 97 FNFPQFVL--------------FDKQNP--TIAYPNPFYQIYEGAAIASRAKVLLMPLTKENDFTPSLNEK--EL----- 153 (374)
T ss_pred HHHHHHHh--------------cCCCCC--EEEECCCCchhhHHHHHhcCCEEEEeecccccCCcCCcchh--hh-----
Confidence 88877652 1 3566 7999999999999899999999999999753 34444432 23
Q ss_pred CCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCcc--c-ccCCCC------CCCCccEEEEcCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYV--E-IDVRSG------QTDGYDAIFLSTHK 298 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~--~-id~~~~------~~~~~D~v~~S~hK 298 (609)
.+++++++++++||||.+.+. ++|+++|++||+++++|++++.-+. + ..+... ...+--+++.|++|
T Consensus 154 -~~~k~v~i~nP~NPTG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK 232 (374)
T PRK05839 154 -QEVDLVILNSPNNPTGRTLSLEELIEWVKLALKHDFILINDECYSEIYENTPPPSLLEASILVGNESFKNVLVINSISK 232 (374)
T ss_pred -ccccEEEEeCCCCCcCcccCHHHHHHHHHHHHHcCCEEEeccchhhcccCCCCCCHhhhhcccCccccCcEEEEecccc
Confidence 358999999999999999884 5677889999999999999653211 1 011000 00022477789999
Q ss_pred CCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCH
Q 038499 299 FLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGH 377 (609)
Q Consensus 299 ~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~ 377 (609)
.+|.|+ .+|+++.++++ ++.+... ......+++.+.+.+. ...+ .+....
T Consensus 233 ~~~~~GlRiG~ii~~~~~--~~~~~~~------------------------~~~~~~~~~~~~q~~~--~~~l-~~~~~~ 283 (374)
T PRK05839 233 RSSAPGLRSGFIAGDASI--LKKYKAY------------------------RTYLGCASPLPLQKAA--AVAW-LDDEHA 283 (374)
T ss_pred ccCCccceeEEEecCHHH--HHHHHHH------------------------HhhcCCCCChHHHHHH--HHHh-ccchHH
Confidence 887664 59999998877 2222110 0001122333333221 1122 122334
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEe
Q 038499 378 EVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA 457 (609)
Q Consensus 378 ~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v 457 (609)
+.++++.++.++.+.+.|. +. . +..+++.|.-.+ +..++++.|.++.||.+
T Consensus 284 ~~~~~~~~~~~~~~~~~l~----~~--~----p~gg~fi~~~~~-------------------~~~~~~~~l~~~~gi~v 334 (374)
T PRK05839 284 EFFRNIYAKNLKLAREILG----IT--I----PPATFYVWLPVD-------------------NDEEFTKKLYQNEGIKV 334 (374)
T ss_pred HHHHHHHHHHHHHHHHhcC----CC--C----CCeeEEEEEeCC-------------------ChHHHHHHHHHHCCEEE
Confidence 5556666666666666552 22 1 233555554433 24567777766679999
Q ss_pred ccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 458 RGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 458 ~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
++|..|..+. ..++++||+++. +++++...++.|..+++
T Consensus 335 ~pg~~f~~~~-------------------------~~~~~iRis~~~--~~~~~~~~l~~l~~~l~ 373 (374)
T PRK05839 335 LPGSFLGRNG-------------------------IGKGYVRIALVY--DTPKLEKALEIIKTYLE 373 (374)
T ss_pred eCchhhCCCC-------------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHhh
Confidence 9886543110 125899999973 68999999999988764
|
|
| >TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=203.30 Aligned_cols=342 Identities=13% Similarity=0.003 Sum_probs=208.7
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh---CCCCCCcEEEeCChHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL---GGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~---g~~~~~~vift~sGttaa 152 (609)
+++.++.+... +.++.+.+++.+.+...........|. ......++|+.+++++ +.+++ +|++| +|++++
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Y~----p~~g~~~lr~aia~~~~~~~~~~d-~I~it-~Ga~~a 107 (402)
T TIGR03542 34 DIIRLGIGDTTQPLPASVIEAFHNAVDELASEETFRGYG----PEQGYPFLREAIAENDYRGRIDPE-EIFIS-DGAKCD 107 (402)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhcccccccccCCC----CCCCCHHHHHHHHHHHHhcCCCHH-HEEEC-CCcHHH
Confidence 56777766544 346678888877665431111110111 1122456777888765 56675 89998 899999
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc-----------eEEEEecCCCCCCCHHHH
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA-----------EVVEIGLDDDGLLDIEAL 221 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-----------~vv~v~~~~~g~ld~e~L 221 (609)
+..+... +.+|| .|++..+.|+.+...++..|+ +++.++.++++.++++ +
T Consensus 108 l~~l~~l----------------~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~ 168 (402)
T TIGR03542 108 VFRLQSL----------------FGSDN--TVAVQDPVYPAYVDSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPD-L 168 (402)
T ss_pred HHHHHHh----------------cCCCC--EEEEeCCCCcchHHHHHHcCCccccccccccceEEEeecchhhCCCCC-c
Confidence 9876543 35788 699999999999988999999 9999988653223222 1
Q ss_pred HHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCC-CCccEEE
Q 038499 222 RSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQT-DGYDAIF 293 (609)
Q Consensus 222 ~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~-~~~D~v~ 293 (609)
.+ . .+++++++++++||||.+.+ +++|+++|++||+++|+|+++..-. .+..+..... .+..+++
T Consensus 169 ~~--~-----~~~~~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~ 241 (402)
T TIGR03542 169 PE--E-----PKIDIIYLCSPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEF 241 (402)
T ss_pred cc--c-----CCceEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEE
Confidence 11 1 46899999999999999998 6778999999999999999976321 1122221111 1234667
Q ss_pred EcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHH
Q 038499 294 LSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK 372 (609)
Q Consensus 294 ~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~ 372 (609)
.|++|.+|.|+ .+|++++++++ +........ ..+... ......+.+.+.+.+ +..++ .
T Consensus 242 ~SfSK~~g~pGlRiG~~i~~~~l--~~~~~~~~~---------------~~~~~~-~~~~~~~~s~~~q~~--~~~~l-~ 300 (402)
T TIGR03542 242 RSFSKTAGFTGVRLGWTVVPKEL--TYADGHSVI---------------QDWERR-QCTKFNGASYPVQRA--AEAAY-A 300 (402)
T ss_pred ecCccccCCCCcceEEEEecHHH--hhcchhhHH---------------HHHHHH-hhhcccCCCHHHHHH--HHHHH-c
Confidence 89999998554 59999999887 211000000 000000 000001222233322 22222 1
Q ss_pred Hhc--CHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHh
Q 038499 373 EYI--GHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLN 450 (609)
Q Consensus 373 ~~~--g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 450 (609)
+.. ......+..++.++++.+.|+.. ++++..+ ..+++.|...+ .. ++..++.+.|.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~L~~~-~~~~~~~----~~~~f~~v~l~-~~---------------~~~~~l~~~l~ 359 (402)
T TIGR03542 301 GEGLQPILEAISYYMENARILRKALEAA-GFKVYGG----EHAPYLWVKTP-EG---------------ISSWDFFDFLL 359 (402)
T ss_pred CcchhHHHHHHHHHHHHHHHHHHHHHhc-CceecCC----CceeEEEEECC-CC---------------CCHHHHHHHHH
Confidence 111 12233455566677788888775 6666543 23444444444 11 35667888877
Q ss_pred hhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 451 DLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 451 ~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
++.||.+++|..|... .++++||++. .++++++..++.|+.+
T Consensus 360 ~~~gv~v~pg~~f~~~---------------------------~~~~iRis~~--~~~~~l~~~l~~l~~~ 401 (402)
T TIGR03542 360 YQYHVVGTPGSGFGPS---------------------------GEGFVRFSAF--GKRENIVEACERIKEA 401 (402)
T ss_pred HhCCEEEeCchhhCCC---------------------------CCCEEEEEec--CCHHHHHHHHHHHHhh
Confidence 6679999988655310 2489999974 3788888888888754
|
This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). |
| >PLN02271 serine hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.3e-20 Score=197.32 Aligned_cols=357 Identities=16% Similarity=0.116 Sum_probs=232.0
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCC-CchhhHHHH-HHHHHHHHHHHHHhCCCCC---CcEEEeCChHHHHHHHHHHHhc
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTC-DSYVGQHTT-NMVHEASNYIKKCLGGGQE---DAMIFCGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~-~~~~~~~~~-~~~~e~r~~ia~~~g~~~~---~~vift~sGttaal~~l~~~l~ 161 (609)
....+.|.+++...+...|+....+ .++.|.... ++..-+.+..++++|++.+ .+|-.- ||+.+++..+.. +
T Consensus 158 N~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~lF~~~~~~~gaNVQp~-SGs~AN~aV~~A-L- 234 (586)
T PLN02271 158 NFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAAFGLDSEKWGVNVQPY-SCTSANFAVYTG-L- 234 (586)
T ss_pred ccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHHhCCcccccccceeec-cHHHHHHHHHHH-h-
Confidence 3566778888877777766543322 244454433 4556677888999998762 145554 899876555533 3
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH---------HHcCceEEEEe--cC-CCCCCCHHHHHHHHhhhc
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW---------RQSLAEVVEIG--LD-DDGLLDIEALRSKLELYK 229 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---------~~~G~~vv~v~--~~-~~g~ld~e~L~~al~~~~ 229 (609)
++||| .|+..+.+|.++.... ...|..+..++ ++ ++|.+|.++|++.+..
T Consensus 235 --------------l~PGD--~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~IDyd~lek~a~~-- 296 (586)
T PLN02271 235 --------------LLPGD--RIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYIDYDKLEEKALD-- 296 (586)
T ss_pred --------------cCCCC--EEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccCHHHHHHHhhh--
Confidence 48999 5999888888876543 23455444444 65 4789999999995543
Q ss_pred cCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEE
Q 038499 230 DAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGIL 309 (609)
Q Consensus 230 ~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L 309 (609)
.+||+|++.+..++ ...|+++|.++|+++|+++++|.||.+|.+..+..+....++|+++++.||||.||.| |++
T Consensus 297 --~rPKLII~g~Sayp--r~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGPrG-G~I 371 (586)
T PLN02271 297 --FRPKILICGGSSYP--REWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGPRG-GII 371 (586)
T ss_pred --cCCeEEEECchhcc--CcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCCCc-eEE
Confidence 69999999988888 7799999999999999999999999999988776644445799999999999999999 888
Q ss_pred EEechhhccCCCCCCccCCCceEeeccccccccccccccc----ccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE----ERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~----~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (609)
+++++. .....+...+++. ......+...+. -..++|+.+-. ++..+.++............++..
T Consensus 372 ~~r~~~--~~~~~g~~gs~s~-------~~~~~d~~~kI~~aVfPglqgGphn~~-IAalAvalkea~~~efk~Ya~QVv 441 (586)
T PLN02271 372 FYRKGP--KLRKQGMLLSHGD-------DNSHYDFEEKINFAVFPSLQGGPHNNH-IAALAIALKQVATPEYKAYMQQVK 441 (586)
T ss_pred Eecccc--cccccCCcccccc-------ccccHHHHHHhhcccCCccccChhHHH-HHHHHHHHHHHhChHHHHHHHHHH
Confidence 888776 2222222222221 000111111110 13445554322 322233332112334567778888
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
++++.+.+.|.+. |++|+...... -.+.+.+.+ ..+++..+.+.| +..||.+..-.-
T Consensus 442 ~NAkaLA~~L~~~-G~~vv~ggTdn--HlvLvDl~~----------------~g~~G~~ae~~L-e~~~I~~Nkn~i--- 498 (586)
T PLN02271 442 KNAQALASALLRR-KCRLVTGGTDN--HLLLWDLTT----------------LGLTGKNYEKVC-EMCHITLNKTAI--- 498 (586)
T ss_pred HHHHHHHHHHHHC-CCeEeeCCCCc--ceeeecCcc----------------cCCCHHHHHHHH-HHcCeEeccccC---
Confidence 8899999999876 89988653222 222223322 125667777777 667998863221
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHH
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP----YYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~----~~~t~eeid~ll~al~~v~~ 523 (609)
|... ....++.|||... .-+.++|++.+.+.|..++.
T Consensus 499 P~d~---------------------~~~~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~ 539 (586)
T PLN02271 499 FGDN---------------------GTISPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ 539 (586)
T ss_pred CCCC---------------------CCCCCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 1100 0113678898864 33467999999999988887
|
|
| >PRK08249 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.7e-21 Score=202.93 Aligned_cols=311 Identities=16% Similarity=0.112 Sum_probs=200.4
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+++......+++++.++++.|++. .++|+ +|+. ++..++..+ +++|| .|+++...|++.
T Consensus 58 y~r~~~p~~~~le~~lA~l~g~~~--~i~~s-sG~~-Ai~~~l~al---------------l~~GD--~Vi~~~~~y~~~ 116 (398)
T PRK08249 58 YSRNTNPTVQAFEEKVRILEGAEA--ATAFS-TGMA-AISNTLYTF---------------LKPGD--RVVSIKDTYGGT 116 (398)
T ss_pred ccCCCChHHHHHHHHHHHHhCCCe--EEEeC-ChHH-HHHHHHHHh---------------cCCCC--EEEEcCCchHHH
Confidence 344445667889999999999752 45554 7765 677666554 47899 799999999887
Q ss_pred HHHH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
...| +..|++++.++. .|+++++++|+ ++|++|++++++||||.+.|+++|+++||+||+++++|+
T Consensus 117 ~~~~~~~~~~~Gi~v~~vd~-----~d~e~l~~~i~-----~~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~ 186 (398)
T PRK08249 117 NKIFTEFLPRMGVDVTLCET-----GDHEQIEAEIA-----KGCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDN 186 (398)
T ss_pred HHHHHHHHhhCCeEEEEcCC-----CCHHHHHHhcC-----CCCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEEC
Confidence 5544 356888887764 48999999998 689999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI 348 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (609)
+++.+...... . .++|+++.|++|++||++. .|+++.++++ ++.+...
T Consensus 187 t~a~~~~~~~l-~---~~~Divv~S~sK~l~g~~~~~gG~vv~~~~l--~~~l~~~------------------------ 236 (398)
T PRK08249 187 TFATPINQNPL-A---LGADLVIHSATKFLSGHADALGGVVCGSKEL--MEQVYHY------------------------ 236 (398)
T ss_pred CcCccccCCch-h---hCCCEEeccCceecCCCCCceEEEEECCHHH--HHHHHHH------------------------
Confidence 98866433222 1 2789999999999997753 4777777666 2222111
Q ss_pred cccccCCC-hhHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCc
Q 038499 349 EERESGGT-PQVIQM-IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQ 412 (609)
Q Consensus 349 ~~r~~~gt-p~i~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~ 412 (609)
.+...++ ....+. +..+ ....+...++..+++..+.+.|+++|.++ |+-|.- ....
T Consensus 237 -~~~~g~~~s~~~a~l~l~~-------l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g 308 (398)
T PRK08249 237 -REINGATMDPMSAYLILRG-------MKTLKLRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFG 308 (398)
T ss_pred -HHhcCCCCCHHHHHHHHhC-------cchHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCC
Confidence 0001111 111111 1111 11234445667788888999999888775 444421 1235
Q ss_pred ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhC
Q 038499 413 AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKG 489 (609)
Q Consensus 413 ~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~ 489 (609)
++++|.+.. +. .....+++.| +.+.+.+.-|...+ .|.......+..+...
T Consensus 309 ~~~sf~~~~-~~---------------~~~~~f~~~l-~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~--------- 362 (398)
T PRK08249 309 GILSFVLKG-GM---------------DTVKRLLPKL-RYAHRAANLGAVETIYGPARTTSHVENTLEERA--------- 362 (398)
T ss_pred ceEEEEEcC-CH---------------HHHHHHHHhC-CcceEccCCCCCCceeeCCcccccccCCHHHHH---------
Confidence 688888764 21 1234555555 45555555554322 1211111122221111
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 490 ~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
..|+.++.||||++.-..++=++.+.++|+.
T Consensus 363 ~~gi~~~liR~svGlE~~~dl~~dl~~al~~ 393 (398)
T PRK08249 363 ALGIPEGLVRISVGIEDTEDLIADLEQAFAH 393 (398)
T ss_pred hcCCCCCeEEEEeccCCHHHHHHHHHHHHHH
Confidence 1466789999999975544445555555544
|
|
| >PRK08045 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-20 Score=200.45 Aligned_cols=306 Identities=15% Similarity=0.118 Sum_probs=196.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
...++++++++++.|.. .++++++| ++++..++..+ +++|| .|+++...|+++...+..
T Consensus 52 pt~~~L~~~lA~l~g~~---~~i~~~sg-~~Ai~~~l~~l---------------~~~GD--~Vl~~~~~y~~~~~~~~~ 110 (386)
T PRK08045 52 PTRDVVQRALAELEGGA---GAVLTNTG-MSAIHLVTTVF---------------LKPGD--LLVAPHDCYGGSYRLFDS 110 (386)
T ss_pred ccHHHHHHHHHHHhCCC---eEEEECCH-HHHHHHHHHHH---------------cCCCC--EEEEcCCCcHHHHHHHHH
Confidence 34678999999999963 46777444 56888887765 47899 699999999876655442
Q ss_pred ----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 201 ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 201 ----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.|.++..++ ..|+++++++++ ++++++++++++||||.+.|+++|.++||++|+++++|++++.+.
T Consensus 111 ~~~~~gi~v~~vd-----~~d~e~l~~~l~-----~~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~ 180 (386)
T PRK08045 111 LAKRGCYRVLFVD-----QGDEQALRAALA-----EKPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPA 180 (386)
T ss_pred HHhhCCeEEEEeC-----CCCHHHHHHhcc-----cCCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 345676664 258999999987 689999999999999999999999999999999999999988775
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEe-chhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
....+. .++|+++.|+|||++|+.+ .|+++++ +++ ++.+... .....
T Consensus 181 ~~~pl~----~gaDivv~S~tK~l~G~~d~~~G~vi~~~~~~--~~~l~~~------------------------~~~~g 230 (386)
T PRK08045 181 LQNPLA----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV--VTELAWW------------------------ANNIG 230 (386)
T ss_pred cCCchh----hCCCEEEeecceeccCCCCceeEEEEeCcHHH--HHHHHHH------------------------HHhcC
Confidence 433332 2789999999999998876 6877775 333 1221100 00000
Q ss_pred CCChhHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCcceEEEE
Q 038499 354 GGTPQVIQ-MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQAILSFN 418 (609)
Q Consensus 354 ~gtp~i~~-~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~~~~~f~ 418 (609)
....+..+ ++..++ ...+...++..+.+..+.+.|+..|.++ |+-|. + ....++++|.
T Consensus 231 ~~~~p~~~~l~~rgl-------~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~ 303 (386)
T PRK08045 231 VTGGAFDSYLLLRGL-------RTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFE 303 (386)
T ss_pred CCCCHHHHHHHHhhh-------ccHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEE
Confidence 11111111 111111 1355566777888889999999998874 44332 1 1235688888
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCC
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKP 495 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~ 495 (609)
+.. +. -....+.+.| +.+.+.+.-|...+ .|.......+.++... ..|+.+
T Consensus 304 ~~~-~~---------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~---------~~gi~~ 357 (386)
T PRK08045 304 LDG-DE---------------QTLRRFLGGL-SLFTLAESLGGVESLISHAATMTHAGMAPEARA---------AAGISE 357 (386)
T ss_pred ecC-cH---------------HHHHHHHHhc-cceeEeccCCCCceeEeCCCCcccccCCHHHHH---------hcCCCC
Confidence 754 21 1124555556 45666666554322 1221111122221111 146778
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 496 GWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 496 g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
+.||||++.-..++-++.+.++|+.
T Consensus 358 ~liR~svGlE~~~dl~~dl~~al~~ 382 (386)
T PRK08045 358 TLLRISTGIEDGEDLIADLENGFRA 382 (386)
T ss_pred CeEEEEeCcCCHHHHHHHHHHHHHH
Confidence 9999999975555445555555543
|
|
| >KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.3e-21 Score=196.10 Aligned_cols=314 Identities=17% Similarity=0.044 Sum_probs=214.9
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
-+.|++|.+++.+.+..- ....|..+++..++...+++.+++++|. .++++|++| +|+.++|...+..+
T Consensus 43 ~~~P~fv~ea~~~~~~~~----~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT-~GA~~ai~~~~~~l---- 113 (420)
T KOG0257|consen 43 FPPPKFVTEAAKNAAKEP----STNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVT-AGANEAISSALLGL---- 113 (420)
T ss_pred CCCcHHHHHHHHHHhccc----hhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEe-cCchHHHHHHHHHH----
Confidence 478899999998877532 2223567778889999999999998885 355689888 89998888655554
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC--------CCCCCCHHHHHHHHhhhccCCCceE
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD--------DDGLLDIEALRSKLELYKDAKRPIL 236 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--------~~g~ld~e~L~~al~~~~~~~~~~l 236 (609)
+.+|| +|++..+.|.++....+..|.+++.|+.. .++.+|.+.|+.+++ ++||+
T Consensus 114 -----------~~~GD--eVii~eP~fd~Y~~~~~maG~tpv~v~~~~~~g~~~s~~~~~D~~~le~~~t-----~kTk~ 175 (420)
T KOG0257|consen 114 -----------LNPGD--EVIVFEPFFDCYIPQVVMAGGTPVFVPLKPKEGNVSSSDWTLDPEELESKIT-----EKTKA 175 (420)
T ss_pred -----------cCCCC--EEEEecCcchhhhhHHhhcCCcceeeccccccccccCccccCChHHHHhhcc-----CCccE
Confidence 48999 79999999999999999999999999887 267899999999999 79999
Q ss_pred EEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccC----CcccccCCCC-CCCCccEEEEcCCCCCCCCCC--c
Q 038499 237 GSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG----PYVEIDVRSG-QTDGYDAIFLSTHKFLGGPGS--P 306 (609)
Q Consensus 237 v~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~----~~~~id~~~~-~~~~~D~v~~S~hK~lggp~g--~ 306 (609)
+++++|+||||.+.+ +++|+++|++||+++|.|+++.. +...+.+..+ +.....+-+.|+.|++| ..| +
T Consensus 176 Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~-~TGWrl 254 (420)
T KOG0257|consen 176 IILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFG-VTGWRL 254 (420)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceee-eeeeee
Confidence 999999999999987 67899999999999999999542 2211111111 12234677789999998 444 9
Q ss_pred EEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHH-HHHHHHHHHH--HHhc--CH-HHH
Q 038499 307 GILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ-MIRAALAFWV--KEYI--GH-EVI 380 (609)
Q Consensus 307 G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~-~~~aal~~~~--~~~~--g~-~~i 380 (609)
||++.++.+ +....+. ..+.-...+...+ ...++.+..+ ++-. +. ..+
T Consensus 255 GW~igp~~L--~~~~~~v------------------------h~~~~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~ 308 (420)
T KOG0257|consen 255 GWAIGPKHL--YSALFPV------------------------HQNFVFTCPTPIQEASAAAFALELACLQPGGSYFITEL 308 (420)
T ss_pred eeeechHHh--hhhHHHH------------------------hhccccccCcHHHHHHHHHHhhhhhccCCcchhHHHHH
Confidence 999997666 2232222 1111122222222 2222222211 1112 12 236
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC--CCChHHHHHHHhhhcCcEec
Q 038499 381 KKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK--PLHGPFVATLLNDLFGIQAR 458 (609)
Q Consensus 381 ~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~--~l~~~~v~~~L~~~~GI~v~ 458 (609)
.+..++.++.+.+.|.++ |+++.++.. +.+.+.-.......+ ...+. --+.-.++++|.+..|+.+-
T Consensus 309 ~~~y~~krdil~k~L~~l-g~~v~~p~g----ayyl~adfs~~~~~~------~~~~~~~~~~d~~~~~wl~~~~Gv~~I 377 (420)
T KOG0257|consen 309 VKEYKEKRDILAKALEEL-GLKVTGPEG----AYYLWADFSLAKSWP------FFEEILEKPDDFKFVRWLIKEGGVVVI 377 (420)
T ss_pred HHHHHHHHHHHHHHHHhc-CCccccCCC----ceEEEEeccccccCC------cchhhccCCCceeeehhhhccCcEEEe
Confidence 677788899999999999 999998842 333333222000000 00000 01234577888888999999
Q ss_pred cCcccCC
Q 038499 459 GGCACAG 465 (609)
Q Consensus 459 ~G~~ca~ 465 (609)
+++.+..
T Consensus 378 P~saF~s 384 (420)
T KOG0257|consen 378 PPSAFGS 384 (420)
T ss_pred CchhcCC
Confidence 9888764
|
|
| >PRK08175 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.7e-20 Score=198.99 Aligned_cols=337 Identities=12% Similarity=0.063 Sum_probs=212.9
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccch
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
+.++.+.+.+.+.+... ... .|....+..++++.+.+++.+.+|. +++++|++| +|+++++..++..+
T Consensus 42 ~~~~~~~~~~~~~~~~~--~~~--~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t-~G~~~~l~~~~~~~----- 111 (395)
T PRK08175 42 PTPPHIVEKLCEVAQRP--DTH--GYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVT-IGSKEGLAHLMLAT----- 111 (395)
T ss_pred CCCHHHHHHHHHHHhCC--CcC--CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEc-cCcHHHHHHHHHHh-----
Confidence 34555666666655321 111 1212222334444455555444454 343368887 89999999887766
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCc
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~ 245 (609)
+++|| .|+++.+.|+.....++..|++++.++.++++. ++++|+++++.. .++++++++++++||
T Consensus 112 ----------~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~-~~~~l~~~l~~~--~~~~~~v~i~~p~NP 176 (395)
T PRK08175 112 ----------LDHGD--TVLVPNPSYPIHIYGAVIAGAQVRSVPLVEGVD-FFNELERAIRES--YPKPKMMILGFPSNP 176 (395)
T ss_pred ----------CCCCC--EEEEcCCCCcchHHHHHHcCCeEEEEecccCCC-cHHHHHHHHhhc--cCCceEEEEeCCCCC
Confidence 47898 699999999998888889999999999876543 588898888631 136899999999999
Q ss_pred cccccCH---HHHHHHHHHhCCeEEEeccccCCc----ccccCCCCC-CCCccEEEEcCCCCCCCCC-CcEEEEEechhh
Q 038499 246 TGIYSDT---RSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQ-TDGYDAIFLSTHKFLGGPG-SPGILLMTKALY 316 (609)
Q Consensus 246 TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~-~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~ 316 (609)
||.+.+. ++|+++|++||+++|+|++++... ....+.... ..+..+++.|++|.+|.|+ ++|+++.++++
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGlRiG~~~~~~~l- 255 (395)
T PRK08175 177 TAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGWRIGFMVGNPEL- 255 (395)
T ss_pred CCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcchhheeeeCCHHH-
Confidence 9999997 678999999999999999965321 111111111 0123466789999998664 48999998887
Q ss_pred ccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
++.+... ......+++...+.+. ..++.......+.++++.++.++++.+.|+
T Consensus 256 -~~~~~~~------------------------~~~~~~~~~~~~q~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~ 308 (395)
T PRK08175 256 -VSALARI------------------------KSYHDYGTFTPLQVAA--IAALEGDQQCVRDIAEQYKRRRDVLVKGLH 308 (395)
T ss_pred -HHHHHHH------------------------HhhcccCCCcHHHHHH--HHHHhCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332110 0001122223332211 111110111245566667777888888888
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
.+ ++.+..+ ..+++.+...+... ..++..+++..|.++.||.+.+|..|..+
T Consensus 309 ~~-~~~~~~p----~~g~~i~i~l~~~~-------------~~~~~~~~~~~l~~~~gv~v~p~~~f~~~---------- 360 (395)
T PRK08175 309 EA-GWMVEMP----KASMYVWAKIPEPY-------------AAMGSLEFAKKLLNEAKVCVSPGIGFGDY---------- 360 (395)
T ss_pred Hc-CCcccCC----CEEEEEEEECCccc-------------CCCCHHHHHHHHHHhCCEEEeCchhhCcC----------
Confidence 76 6665433 23444444433111 01245778777666679999988765311
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++||++. .+++++...++.|..++..
T Consensus 361 -----------------~~~~lRis~~--~~~~~~~~al~~l~~~l~~ 389 (395)
T PRK08175 361 -----------------GDTHVRFALI--ENRDRIRQAIRGIKAMFRA 389 (395)
T ss_pred -----------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHHh
Confidence 2479999996 4788888888888877753
|
|
| >PLN02450 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.4e-20 Score=203.99 Aligned_cols=352 Identities=14% Similarity=0.117 Sum_probs=219.9
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcC--CccC-----CCCCCchhhHHHHHHHHHHHHHHHHHh----C----CCCCCc
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLP--FYGN-----THTCDSYVGQHTTNMVHEASNYIKKCL----G----GGQEDA 141 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~--~~~n-----~~~~~~~~~~~~~~~~~e~r~~ia~~~----g----~~~~~~ 141 (609)
..|.|+.+.+..+...+.+.+...... +..+ .....|....+ ..++|+.|++++ | .+++ +
T Consensus 39 g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G----~~~LR~aiA~~l~~~~~~~~~v~~~-~ 113 (468)
T PLN02450 39 GIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHG----LPAFKNALAEFMSEIRGNKVTFDPN-K 113 (468)
T ss_pred eeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCC----hHHHHHHHHHHHHHhhCCCCCcChH-H
Confidence 578888888777775565555443110 0000 00000111112 234555555555 3 4555 8
Q ss_pred EEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH-HcCceEEEEecCC--CCCCCH
Q 038499 142 MIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR-QSLAEVVEIGLDD--DGLLDI 218 (609)
Q Consensus 142 vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~--~g~ld~ 218 (609)
|++| +|+++++..++.++. ++|| .|+++.+.|+.+...+. ..|++++.|+++. +..+|+
T Consensus 114 Iiit-~Ga~~al~~l~~~l~---------------~pGd--~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~~~ 175 (468)
T PLN02450 114 LVLT-AGATSANETLMFCLA---------------EPGD--AFLLPTPYYPGFDRDLKWRTGVEIVPIHCSSSNGFQITE 175 (468)
T ss_pred eEEc-cChHHHHHHHHHHhC---------------CCCC--EEEECCCCCCchHHHHhhcCCcEEEEEecCCccCCcCCH
Confidence 8887 899999999988773 7899 79999999998877777 5899999999863 457788
Q ss_pred HHHHHHHhhhcc-CCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCC-cc---c---ccCC-C---
Q 038499 219 EALRSKLELYKD-AKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGP-YV---E---IDVR-S--- 283 (609)
Q Consensus 219 e~L~~al~~~~~-~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~-~~---~---id~~-~--- 283 (609)
++|++++.+... ..+++++++++|+||||.+.+. ++|.++|++||+++|+|++++.- +. . ..+. .
T Consensus 176 ~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~ 255 (468)
T PLN02450 176 SALEEAYQQAQKLNLKVKGVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKL 255 (468)
T ss_pred HHHHHHHHHHHhcCCCeeEEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhccc
Confidence 999998864211 1378999999999999999885 56788899999999999997631 11 1 1110 0
Q ss_pred --CCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHH
Q 038499 284 --GQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI 360 (609)
Q Consensus 284 --~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~ 360 (609)
......-+++.|++|.+|.| ..+|+++++++.+ +..+... ......+.+.
T Consensus 256 ~~~~~~~~vi~l~S~SK~~~l~GlRiG~li~~~~~l-~~~~~~~--------------------------~~~~~~s~~~ 308 (468)
T PLN02450 256 ENTDVSNRVHIVYSLSKDLGLPGFRVGAIYSNDEMV-VSAATKM--------------------------SSFGLVSSQT 308 (468)
T ss_pred ccCCCCCcEEEEEeccccCCCCCccEEEEEECCHHH-HHHHHHH--------------------------hhcCCCCHHH
Confidence 00112347788999999744 4599999986541 1111000 0001123333
Q ss_pred HHHHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCC
Q 038499 361 QMIRAALAFWVKEYI----GHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTET 436 (609)
Q Consensus 361 ~~~~aal~~~~~~~~----g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~ 436 (609)
+.+ +..++.+.. ..+..+++.++.++.+.+.|.++ ++.+..+ ..+++.|.-.+.... .
T Consensus 309 Q~a---~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-gi~~~~~----~~g~flwi~l~~~~~----------~ 370 (468)
T PLN02450 309 QYL---LSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-GIKCLKS----NAGLFCWVDMRHLLK----------S 370 (468)
T ss_pred HHH---HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCC----CceEEEEEEchHhcC----------c
Confidence 322 122222211 23445667777788888888877 7766543 345555544330110 0
Q ss_pred CCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 038499 437 DKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLE 516 (609)
Q Consensus 437 ~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~ 516 (609)
........+.+.|.++.||.+.+|..|..+ .++|+||+++. .++++++..++
T Consensus 371 ~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~---------------------------~~g~~Rl~f~~-~~~~~l~~~l~ 422 (468)
T PLN02450 371 NTFEAEMELWKKIVYEVKLNISPGSSCHCT---------------------------EPGWFRVCFAN-MSEETLDLAMK 422 (468)
T ss_pred CCchHHHHHHHHHHHhCCEEEeCccccCCC---------------------------CCCEEEEEecC-CCHHHHHHHHH
Confidence 001122346666666679999999876521 25899999985 46899999999
Q ss_pred HHHHHHHh
Q 038499 517 ALEFIAIY 524 (609)
Q Consensus 517 al~~v~~~ 524 (609)
.|+.+++.
T Consensus 423 ri~~~l~~ 430 (468)
T PLN02450 423 RLKSFVES 430 (468)
T ss_pred HHHHHHHh
Confidence 99988754
|
|
| >PRK06425 histidinol-phosphate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-20 Score=197.01 Aligned_cols=283 Identities=13% Similarity=-0.037 Sum_probs=189.9
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL 202 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (609)
..++++.+++++|.+++ +|++| +|++++|..++..+ ++|+ |++..+.|+.+...++..|
T Consensus 42 ~~~lr~~ia~~~~~~~~-~I~it-~Gs~~~l~~~~~~~----------------~~~~---vv~~~P~y~~y~~~~~~~G 100 (332)
T PRK06425 42 YTDIEDQIKIYTQGLKI-KVLIG-PGLTHFIYRLLSYI----------------NVGN---IIIVEPNFNEYKGYAFTHG 100 (332)
T ss_pred HHHHHHHHHHHhCCCcc-eEEEC-CCHHHHHHHHHHHh----------------CCCc---EEEeCCChHHHHHHHHHcC
Confidence 56799999999999987 88887 89999999887643 4655 4444788999888999999
Q ss_pred ceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCccc-
Q 038499 203 AEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVE- 278 (609)
Q Consensus 203 ~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~~- 278 (609)
++++.||++.. .+|.+.++ + .+++++++++|+||||.+.+. ++|+++|++||+++|+|+++.--...
T Consensus 101 ~~v~~vp~~~~-~~~~~~l~----~----~~~k~v~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~ 171 (332)
T PRK06425 101 IRISALPFNLI-NNNPEILN----N----YNFDLIFIVSPDNPLGNLISRDSLLTISEICRKKGALLFIDEAFIDFVPNR 171 (332)
T ss_pred CeEEEEeCCcc-cCcHHHHh----h----cCCCEEEEeCCCCCcCCccCHHHHHHHHHHHHHcCCEEEEecchhcccccc
Confidence 99999998753 34554443 2 368899999999999999885 55777789999999999996532110
Q ss_pred -ccCCCC-CCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCC
Q 038499 279 -IDVRSG-QTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG 355 (609)
Q Consensus 279 -id~~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~g 355 (609)
...... ....--+++.|++|.+|-| ..+|++++++++ ++.+..... ..
T Consensus 172 ~~~~~~~~~~~~~vi~~~SfSK~~~l~GlRiGy~v~~~~l--i~~l~~~~~---------------------------~~ 222 (332)
T PRK06425 172 AEEDVLLNRSYGNVIIGRSLTKILGIPSLRIGYIATDDYN--MKISRKITE---------------------------PW 222 (332)
T ss_pred chhHHHHhccCCCEEEEeecHHhcCCchhhheeeecCHHH--HHHHHHcCC---------------------------CC
Confidence 011111 0112346778999999844 459999999887 333211100 00
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 356 TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 356 tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
+.+ ....+++... ......+...+..++.++++.+.|+++ ++.+..+. ...++++. .+
T Consensus 223 ~~~--~~~~~~l~~~-~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~~~---~g~f~~~~-~~-------------- 280 (332)
T PRK06425 223 SVC--DPAIDFIRSI-DLDYVAKHSLDIMENERSYLINNLEAM-GFRAAGDP---SANFITFM-IP-------------- 280 (332)
T ss_pred ccC--HHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHC-CCEECCCC---CceEEEEE-cC--------------
Confidence 001 1111111100 001112455667777888899999887 67765431 23333333 22
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTL 515 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll 515 (609)
+..++.+.|.+ .||.+++|..|.++ .++++||+++ +.++.++++
T Consensus 281 -----~~~~~~~~l~~-~gi~v~~~~~f~~~---------------------------~~~~iRis~~---~~~~~~~l~ 324 (332)
T PRK06425 281 -----DAHDFYSYLLK-NGILVRLLDDYECL---------------------------GEQYIRIAIR---RRSFNIKLV 324 (332)
T ss_pred -----CHHHHHHHHHH-CCeEEEECCCCCCC---------------------------CCCEEEEEeC---CHHHHHHHH
Confidence 25678888876 59999988765311 1479999998 899999999
Q ss_pred HHHHHHH
Q 038499 516 EALEFIA 522 (609)
Q Consensus 516 ~al~~v~ 522 (609)
++|++++
T Consensus 325 ~al~~~~ 331 (332)
T PRK06425 325 NALRNFL 331 (332)
T ss_pred HHHHHHh
Confidence 9998764
|
|
| >PRK06460 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.3e-21 Score=201.55 Aligned_cols=312 Identities=16% Similarity=0.089 Sum_probs=192.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+++.......++++.++++.|++. .++|+ +|+ +++..++..+ +++|| .|+++...|...
T Consensus 39 y~r~~~p~~~~L~~~lA~l~g~~~--~v~~~-sG~-~ai~~~l~al---------------~~~Gd--~Vl~~~~~~~~t 97 (376)
T PRK06460 39 YSREANPTVLELTKKIVELENAEM--GVAFS-SGM-GAISTTALAL---------------LKPGN--SVLVHRDMFGRS 97 (376)
T ss_pred eeCCCCccHHHHHHHHHHHhCCCc--EEEeC-CHH-HHHHHHHHHH---------------hCCCC--EEEEecCCcCcH
Confidence 444445667889999999999964 57775 776 5777776665 47899 577776555332
Q ss_pred ----HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 ----LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ----~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
...++..|++++.++.+. .+.+++.++ ++++++++++++||||.+.|+++|+++||++|+++++|+
T Consensus 98 y~~~~~~~~~~G~~v~~~~~~~-----~~~l~~~~~-----~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDe 167 (376)
T PRK06460 98 YRFFTDYLKNWGVNVDASNPGS-----DNIIEKAKS-----KRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDA 167 (376)
T ss_pred HHHHHHHHHhhCcEEEEECCCC-----HHHHHHhcC-----CCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEEC
Confidence 234566799999887642 334444444 689999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI 348 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (609)
+++.+.. ..++. .+.|+++.|+||+++|+++ .|+++.++++ ++.+....
T Consensus 168 a~~~~~~---~~~l~-~~~divv~S~sK~l~G~~~~~~G~~~~~~~l--~~~l~~~~----------------------- 218 (376)
T PRK06460 168 TFSTPIN---QKPLE-LGADIVVHSASKFLAGHNDVIAGLAAGYGKL--LNVIDQMR----------------------- 218 (376)
T ss_pred CcCcccc---CChhh-cCCCEEEeecceeccCCCCceEEEEecCHHH--HHHHHHHH-----------------------
Confidence 9876532 22221 2679999999999997753 7898888876 22221110
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCcce
Q 038499 349 EERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQAI 414 (609)
Q Consensus 349 ~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~~~ 414 (609)
.....+.....+. .+ + ......+...++..++++++.+.|+++|.++ |+-|. + ....+.
T Consensus 219 -~~~g~~~~~~~a~--~~--l--~~~~~l~~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~ 291 (376)
T PRK06460 219 -RTLGTSLDPHAAY--LT--L--RGIKTLKIRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGV 291 (376)
T ss_pred -HhcCCCCCHHHHH--HH--H--hchhhHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceE
Confidence 0010111111111 11 0 1112245566778888999999999888774 44331 1 124678
Q ss_pred EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCC
Q 038499 415 LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYV 491 (609)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~ 491 (609)
++|.+.. +. -....+.+.| +.+.+.+.-|..-+ .|+......+..+... ..
T Consensus 292 ~s~~~~~-~~---------------~~~~~~~~~l-~~~~~~~s~Gg~~sl~~~p~~~~~~~~~~~~~~---------~~ 345 (376)
T PRK06460 292 LSFEVNG-GQ---------------ESALKVMKSL-KLIIPAQTLGGVNSVISHPATMSHRTLSLEERK---------IV 345 (376)
T ss_pred EEEEEcC-cH---------------HHHHHHHHhC-CcceeccCCCCCceEEeCccccccccCCHHHHH---------hc
Confidence 8888764 21 1233444544 33444444442111 1222111122221111 14
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 492 GVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 492 ~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
|+.++.||+|++.- |.+.+++.|+..++
T Consensus 346 gi~~~liR~svGlE----~~~dl~~dl~~al~ 373 (376)
T PRK06460 346 GITDSLLRLSVGIE----DVNDLIEDLDRALS 373 (376)
T ss_pred CCCCCeEEEEeccC----CHHHHHHHHHHHHH
Confidence 56789999999964 45555555555443
|
|
| >PLN03227 serine palmitoyltransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-20 Score=196.59 Aligned_cols=343 Identities=14% Similarity=0.108 Sum_probs=213.7
Q ss_pred HHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHH
Q 038499 91 RYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILRE 170 (609)
Q Consensus 91 ~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~ 170 (609)
+.+.+++.+.+.++ + +++..+...+.......++++.+++++|.+ +.++|+ +|+++++..+.. +
T Consensus 15 ~~~~~~~~~a~~~~-g-~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e--~al~~~-sG~~a~~~~i~~-l---------- 78 (392)
T PLN03227 15 PTLRQTALESLSHY-G-CGSCGPRGFYGTIDAHLELEQCMAEFLGTE--SAILYS-DGASTTSSTVAA-F---------- 78 (392)
T ss_pred HHHHHHHHHHHHHh-C-CCCcccccccCChHHHHHHHHHHHHHhCCC--cEEEec-CcHHHHHHHHHH-h----------
Confidence 35666677776653 2 222212222334457889999999999986 367786 898887754443 3
Q ss_pred HHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhc---------cCCCceEEEEec
Q 038499 171 KLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYK---------DAKRPILGSFSA 241 (609)
Q Consensus 171 ~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~---------~~~~~~lv~~s~ 241 (609)
+++|| +|+++...|+++...++..+++++.++.+ |++++++.+.... ..+++++|+++.
T Consensus 79 -----~~~GD--~Vl~~~~~h~s~~~~~~l~~~~~~~~~~~-----d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~ 146 (392)
T PLN03227 79 -----AKRGD--LLVVDRGVNEALLVGVSLSRANVRWFRHN-----DMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEG 146 (392)
T ss_pred -----CCCCC--EEEEeccccHHHHHHHHHcCCeEEEeCCC-----CHHHHHHHHHHhhhhccccccccCCCcEEEEEcC
Confidence 47999 79999999999988888888888888764 4455554332211 113688999999
Q ss_pred ccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc---------ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE---------IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 242 ~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~---------id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
++|++|.+.|+++|.++|++||+++++|++++.+... .++.+ ..++|++++|.+|.+| |.| |+++.+
T Consensus 147 v~~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p--~~~~Div~~slsk~~g-~~g-g~v~~~ 222 (392)
T PLN03227 147 LYKNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKP--MVHAEIVTFSLENAFG-SVG-GMTVGS 222 (392)
T ss_pred CcCCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCC--CCCceEEEeechhhhh-ccC-cEEecC
Confidence 9999999999999999999999999999999855332 11222 1367999999999987 654 788888
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ-MIRAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~-~~~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
+++. +.+... +.+ ..+....+++.. ...+++... ...+.+.++.+++.+++
T Consensus 223 ~~~~--~~~~~~--~~~--------------------~~~~~~~~p~~~~aa~~al~~~----~~~~~~~~~l~~~~~~l 274 (392)
T PLN03227 223 EEVV--DHQRLS--GSG--------------------YCFSASAPPFLAKADATATAGE----LAGPQLLNRLHDSIANL 274 (392)
T ss_pred HHHH--HHHHHh--CcC--------------------ccccCCCCHHHHHHHHHHHHHH----hcCHHHHHHHHHHHHHH
Confidence 8762 222111 000 011111223222 222222221 11345667788888899
Q ss_pred HHHhCCCCceEEeCCC-------CCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 392 LERLLPNQNIKILGNT-------STKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 392 ~~~L~~~p~i~v~~~~-------~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
.+.|++. ++...+.. .....+++.+.+.+ ... . ... ........+++.|.+ .||.++....+.
T Consensus 275 ~~~L~~~-~~~~~~~~rg~~~~~~~~~~~i~~i~~~~-~~~-~-----~~~-~~~~~~~~~~~~~~~-~Gi~~~~~~~~~ 344 (392)
T PLN03227 275 YSTLTNS-SHPYALKLRNRLVITSDPISPIIYLRLSD-QEA-T-----RRT-DETLILDQIAHHSLS-EGVAVVSTGGHV 344 (392)
T ss_pred HHHHHhc-CCccccccccccccCCCCCCCEEEEEeCC-HHH-h-----hhh-hhhhHHHHHHHHHHH-CCCEEEeccccc
Confidence 9988742 22211110 01245666666643 110 0 000 000012467777766 599886321110
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
...+ ..+.+..+|++++..+|+||+++++++|+++++..
T Consensus 345 ---~~~~-------------------~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~~~ 383 (392)
T PLN03227 345 ---KKFL-------------------QLVPPPCLRVVANASHTREDIDKLLTVLGEAVEAI 383 (392)
T ss_pred ---CCcC-------------------CCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 0000 01135789999999999999999999999998764
|
|
| >cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=201.29 Aligned_cols=311 Identities=19% Similarity=0.212 Sum_probs=200.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+++.......++++.++++.|.+ +.+ ++++|+ +|+..++..+ +++|| .|+++...|++.
T Consensus 34 y~r~~~p~~~~le~~la~l~g~~--~a~-~~~sG~-~Ai~~~l~~l---------------~~~gd--~Vl~~~~~y~~~ 92 (369)
T cd00614 34 YSRIGNPTVDALEKKLAALEGGE--AAL-AFSSGM-AAISTVLLAL---------------LKAGD--HVVASDDLYGGT 92 (369)
T ss_pred eECCCChhHHHHHHHHHHHHCCC--CEE-EEcCHH-HHHHHHHHHH---------------cCCCC--EEEECCCCcchH
Confidence 33334566788999999999974 244 445776 5677776665 37888 699999999887
Q ss_pred HHHH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
...+ +..|++++.++.+ |+++++++++ +++++|++++++||+|.+.|+++|+++||+||+++++|+
T Consensus 93 ~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~ 162 (369)
T cd00614 93 YRLFERLLPKLGIEVTFVDPD-----DPEALEAAIK-----PETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDN 162 (369)
T ss_pred HHHHHHHHhhcCeEEEEeCCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEEC
Confidence 6544 3568899988765 6899999997 579999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEec-hhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
+++.+...-.+ . .++|+++.|++|+++|++. .|+++.++ ++ ++.+....
T Consensus 163 t~~~~~~~~~~-~---~g~Divv~S~tK~l~g~~~~~gG~v~~~~~~l--~~~l~~~~---------------------- 214 (369)
T cd00614 163 TFATPYLQRPL-E---LGADIVVHSATKYIGGHSDVIAGVVVGSGEAL--IQRLRFLR---------------------- 214 (369)
T ss_pred CCcchhcCChh-h---hCCcEEEeccceeccCCCCceEEEEEeCcHHH--HHHHHHHH----------------------
Confidence 98877542111 1 2789999999999998753 68898877 55 22221110
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC-------------CCCCcc
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT-------------STKRQA 413 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~-------------~~~r~~ 413 (609)
+...++.+.... .+++. .....+...++..++++++.+.|+++|++. +.-|. .....+
T Consensus 215 ---~~~g~~~~p~~a-~~~l~----~l~tl~~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~ 286 (369)
T cd00614 215 ---LALGTILSPFDA-WLLLR----GLKTLPLRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGG 286 (369)
T ss_pred ---HhhCCCCCHHHH-HHHHc----CCCCHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCce
Confidence 000111111111 11111 112344556777888999999999988764 33331 012467
Q ss_pred eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCC
Q 038499 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGY 490 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~ 490 (609)
+++|.+.+ +. .....+.+.| +.+.+.+.-|...+ .|.......+.++.. ..
T Consensus 287 i~s~~l~~-~~---------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~---------~~ 340 (369)
T cd00614 287 VFSFELKG-GL---------------EAAKKFLNAL-KLFSLAVSLGGVESLVEHPASMTHSQLPPEER---------AA 340 (369)
T ss_pred EEEEEeCC-CH---------------HHHHHHHHcC-CcceEcccCCCCceeeeCCcccccccCCHHHH---------Hh
Confidence 88888864 11 1233444444 34444444443222 111111111211111 02
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 491 VGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 491 ~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.|+.++.||+|++. |+++.+++.|+..+
T Consensus 341 ~g~~~~liR~svGl----E~~~dl~~dl~~al 368 (369)
T cd00614 341 AGITPGLVRLSVGI----EDVEDLIADLEQAL 368 (369)
T ss_pred cCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence 35668999999996 56777777766543
|
This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life. |
| >PRK07811 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-20 Score=201.98 Aligned_cols=303 Identities=18% Similarity=0.171 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
....++++.++++.|.+. .++++ +|+ +++..++..+ +++|| .|+++.+.|.+....+..
T Consensus 61 p~~~~Le~~lA~~~g~~~--~i~~~-sG~-~Ai~~~l~al---------------l~~Gd--~Vl~~~~~y~~t~~~~~~ 119 (388)
T PRK07811 61 PTRTALEEQLAALEGGAY--GRAFS-SGM-AATDCLLRAV---------------LRPGD--HIVIPNDAYGGTFRLIDK 119 (388)
T ss_pred ccHHHHHHHHHHHhCCCc--eEEeC-CHH-HHHHHHHHHH---------------hCCCC--EEEEcCCCchHHHHHHHH
Confidence 346789999999999874 46664 775 6788887766 47899 699999999876655443
Q ss_pred ----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 201 ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 201 ----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.|++++.++. .|+++|+++++ +++++|++++++||||.+.|+++|+++||++|+++|+|++++.++
T Consensus 120 ~~~~~gi~~~~~d~-----~d~e~l~~~i~-----~~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~ 189 (388)
T PRK07811 120 VFTRWGVEYTPVDL-----SDLDAVRAAIT-----PRTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPY 189 (388)
T ss_pred hCcCCCeEEEEeCC-----CCHHHHHHhcC-----cCCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 5788887765 38999999998 689999999999999999999999999999999999999988775
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
....+. .++|++++|++|+++||++ .|+++++++.. ...+....... .
T Consensus 190 ~~~p~~----~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l-~~~~~~~~~~~-------------------------g 239 (388)
T PRK07811 190 LQQPLA----LGADVVVHSTTKYIGGHSDVVGGALVTNDEEL-DEAFAFLQNGA-------------------------G 239 (388)
T ss_pred cCCchh----hCCcEEEecCceeecCCCCcEEEEEEECCHHH-HHHHHHHHHhc-------------------------C
Confidence 433332 2789999999999998865 58888865431 11221110000 0
Q ss_pred CChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcceEEEEec
Q 038499 355 GTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAILSFNIH 420 (609)
Q Consensus 355 gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~~f~~~ 420 (609)
.+.+... +.+... ...-.+...++..+++..+.+.|+++|++. |+-|.- ....++++|.+.
T Consensus 240 ~~~s~~~---a~l~~~--~L~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 314 (388)
T PRK07811 240 AVPGPFD---AYLTLR--GLKTLAVRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLA 314 (388)
T ss_pred CCCCHHH---HHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeC
Confidence 1111111 111111 112244555667778899999999999875 444421 113568888886
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
. +. -....+.+.| +.+.+.+.-|...+ .|.......+..+ ..|+.++.
T Consensus 315 ~-~~---------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~------------~~gi~~~l 365 (388)
T PRK07811 315 G-GE---------------EAARDFCART-KVFTLAESLGGVESLIEHPSAMTHASTAGS------------QLEVPDDL 365 (388)
T ss_pred C-CH---------------HHHHHHHHhC-CcceeeccCCCCcceEeCCcccCcccCCHh------------hcCCCCCE
Confidence 4 21 1233455555 44555555554322 1111111111100 12667899
Q ss_pred EEEecCCCCCHHHHHHHHHHH
Q 038499 498 TRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al 518 (609)
||||++.-..++=++.+.++|
T Consensus 366 iR~svGlE~~~dl~~dl~~al 386 (388)
T PRK07811 366 VRLSVGIEDVADLLADLEQAL 386 (388)
T ss_pred EEEEeCCCCHHHHHHHHHHHh
Confidence 999999754433344444443
|
|
| >PLN02509 cystathionine beta-lyase | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=203.67 Aligned_cols=306 Identities=15% Similarity=0.171 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH--
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW-- 198 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (609)
...++++++++++.|.+ +.++++ +|+ +++..++.. +++|| +|+++...|+++...+
T Consensus 133 pt~~aLE~~lA~leg~e--~ai~~~-SG~-aAi~~il~l----------------l~~GD--~VI~~~~~y~~t~~ll~~ 190 (464)
T PLN02509 133 PTRDALESLLAKLDKAD--RAFCFT-SGM-AALSAVTHL----------------IKNGE--EIVAGDDVYGGSDRLLSQ 190 (464)
T ss_pred HHHHHHHHHHHHHhCCC--EEEEeC-cHH-HHHHHHHHH----------------hCCCC--EEEEcCCchhhHHHHHHH
Confidence 45788999999999864 245554 665 567665543 37899 6999999998876444
Q ss_pred --HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 199 --RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 199 --~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
...|++++.++. .|+++++++++ +++++|++++++||||.+.|+++|+++||+||+++++|+|++.|+
T Consensus 191 ~l~~~G~~v~~vd~-----~d~e~l~~ai~-----~~TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~ 260 (464)
T PLN02509 191 VVPRSGVVVKRVNT-----TNLDEVAAAIG-----PQTKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPV 260 (464)
T ss_pred HHHHCCeEEEEeCC-----CCHHHHHHhCC-----cCCeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccc
Confidence 356999988864 37899999997 689999999999999999999999999999999999999998876
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
....+. .++|++++|++||++|+++ .|+++++++.. ...+... +...
T Consensus 261 ~~~pl~----~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l-~~~~~~~--------------------------~~~~ 309 (464)
T PLN02509 261 LSRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKL-AKEVYFL--------------------------QNSE 309 (464)
T ss_pred cCChhh----cCCcEEEecCcccccCCCccceeEEEeccHHH-HHHHHHH--------------------------HHhc
Confidence 543332 2789999999999999876 68888765541 1111000 0001
Q ss_pred CChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCcceEEEEec
Q 038499 355 GTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQAILSFNIH 420 (609)
Q Consensus 355 gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~~~~~f~~~ 420 (609)
|+. +... .+.+.. ....-.+...++.++.++++.+.|+++|.++ |+-|. + ....+.++|.+
T Consensus 310 g~~-l~p~-~A~l~l--r~L~tL~~R~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~- 384 (464)
T PLN02509 310 GSG-LAPF-DCWLCL--RGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT- 384 (464)
T ss_pred CCC-cCHH-HHHHHH--hhhhhHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEe-
Confidence 110 0000 111111 1112345566778888999999999999884 55442 1 12356888877
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
. +. -....+++.| +.+.+.+.-|...+ .|.......+..+... ..|+.++.
T Consensus 385 ~-~~---------------~~~~~f~~~l-~l~~~a~slG~~~SLi~~p~~~sh~~~~~~~~~---------~~Gi~~~l 438 (464)
T PLN02509 385 G-SV---------------ALSKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEVRE---------ARGLTEDL 438 (464)
T ss_pred C-CH---------------HHHHHHHHcC-CcceEcccCCCCCceeeCCcccccccCCHHHHH---------hcCCCCCe
Confidence 4 21 1234555655 45666666664322 1221111222222111 24667899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 498 TRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
||||+|. |+++.+++-|+..++.
T Consensus 439 iRlSvGl----E~~~DLi~Dl~~Al~~ 461 (464)
T PLN02509 439 VRISAGI----EDVDDLISDLDIAFRT 461 (464)
T ss_pred EEEEecc----CCHHHHHHHHHHHHcc
Confidence 9999996 4566666666665544
|
|
| >PRK14809 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.8e-20 Score=195.44 Aligned_cols=319 Identities=14% Similarity=0.047 Sum_probs=206.3
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
.++.|+.+... ..++.+.+++.+.+......+.. ...++|+.++++++.+++ +|++| +|++++|..
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~-----------~~~~lr~~ia~~~~~~~~-~I~it-~G~~~al~~ 97 (357)
T PRK14809 31 DLVKLSSNENPHGPSPAAVEAIREAAERVHSYPKA-----------SHADLTAALADRWDVSPE-QVWLA-NGGDGALDY 97 (357)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhcCCCC-----------CHHHHHHHHHHHhCCCcc-eEEEC-CCHHHHHHH
Confidence 35556554332 34456777777655322111111 145788999999999887 89988 899999999
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCC
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~ 233 (609)
+++++ +++|| .|+++.+.|+.+....+..|++++.++++. +..++++++++++. +
T Consensus 98 ~~~~~---------------~~~gd--~V~v~~P~y~~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~------~ 154 (357)
T PRK14809 98 LARAM---------------LDPGD--TVLVPDPGFAYYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD------G 154 (357)
T ss_pred HHHHh---------------cCCCC--EEEEeCCChHHHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc------C
Confidence 88876 37898 699998888877767777899999998864 34677777776543 5
Q ss_pred ceEEEEecccCccccccCHHHHHHHHHHh--CCeEEEeccccCCcccccC-CCCCCCCccEEEEcCCCCCCCC-CCcEEE
Q 038499 234 PILGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVEIDV-RSGQTDGYDAIFLSTHKFLGGP-GSPGIL 309 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~vivD~A~~~~~~~id~-~~~~~~~~D~v~~S~hK~lggp-~g~G~L 309 (609)
++++++++++||||.+.+.+++.++++.. ++++|+|+++..-...... ........-+++.|++|.+|.| ..+|++
T Consensus 155 ~k~i~l~~p~NPTG~~~s~~~~~~l~~~~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~GlRiG~~ 234 (357)
T PRK14809 155 ERIVYLTSPHNPTGSEIPLDEVEALAERTDEETLVVVDEAYGEFAERPSAVALVEERDDVAVLRTFSKAYGLAGLRLGYA 234 (357)
T ss_pred CcEEEEeCCCCCCCcCCCHHHHHHHHHhCccCcEEEEechhhhccCCchhHHHHhhCCCEEEEecchhHhcCcchhheee
Confidence 78999999999999999988877777654 7899999997632111010 0010112346778999999844 359999
Q ss_pred EEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIE 389 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (609)
++++++ ++.+.... ...+.+.+.+ .+++..+ .+....+...+..++.++
T Consensus 235 ~~~~~~--~~~~~~~~--------------------------~~~~~~~~~~--~~a~~~l-~~~~~~~~~~~~~~~~r~ 283 (357)
T PRK14809 235 VVPEEW--ADAYARVN--------------------------TPFAASELAC--RAGLAAL-DDDEHVERTVETARWARE 283 (357)
T ss_pred ecCHHH--HHHHHHhC--------------------------CCCCCCHHHH--HHHHHHh-CCHHHHHHHHHHHHHHHH
Confidence 999887 33331110 0011222222 2222222 122223445555666677
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
++.+.|... .+ + +. +.+.+...+ +..++++.|. +.||.+++|..|.
T Consensus 284 ~l~~~L~~~----~~-~---~~-g~f~~~~~~-------------------~~~~~~~~l~-~~gv~v~~g~~f~----- 329 (357)
T PRK14809 284 YIREELDAP----TW-E---SA-GNFVLAEVG-------------------DASAVAEAAQ-ERGVIVRDCTSFG----- 329 (357)
T ss_pred HHHHHhcCc----cC-C---CC-CCEEEEECC-------------------CHHHHHHHHH-HCCEEEEECccCC-----
Confidence 777777542 12 1 12 333333222 2467788875 4699999887553
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++++||+++ +.++++.++++|+.+++
T Consensus 330 ------------------------~~~~iRls~~---~~~~~~~~l~~L~~~l~ 356 (357)
T PRK14809 330 ------------------------LPECIRITCG---TREETERAVEVLNEVLA 356 (357)
T ss_pred ------------------------CCCeEEEecC---CHHHHHHHHHHHHHHhc
Confidence 1479999986 68999999999988754
|
|
| >PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-20 Score=198.13 Aligned_cols=328 Identities=19% Similarity=0.164 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH--
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW-- 198 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (609)
....++++.++++.|++. . +++++|+. |+..++..+ +++|| .|+++...|.+....+
T Consensus 69 p~~~~Le~~lA~l~g~~~--a-v~~sSG~a-Ai~~al~al---------------l~~Gd--~Vv~~~~~y~~t~~~~~~ 127 (436)
T PRK07812 69 PTQDVVEQRIAALEGGVA--A-LLLASGQA-AETFAILNL---------------AGAGD--HIVSSPRLYGGTYNLFHY 127 (436)
T ss_pred chHHHHHHHHHHHhCCCe--E-EEEccHHH-HHHHHHHHH---------------hCCCC--EEEEeCCcchHHHHHHHH
Confidence 446689999999999863 3 44458877 566665554 47898 6888888888766543
Q ss_pred --HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 199 --RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 199 --~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
...|++++.++ +. .|+++++++++ +++++|++++++||+|.+.|+++|+++||+||+++++|++++.|.
T Consensus 128 ~l~~~Gi~v~~vd-d~---~d~e~l~~ai~-----~~tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~ 198 (436)
T PRK07812 128 TLPKLGIEVSFVE-DP---DDLDAWRAAVR-----PNTKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPY 198 (436)
T ss_pred HhhcCeEEEEEEC-CC---CCHHHHHHhCC-----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 33688888885 22 28999999988 689999999999999999999999999999999999999998776
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC-cEEEEEechhhccCCCCCCccCCCceEeecccccccccccc---------
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS-PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLE--------- 346 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~--------- 346 (609)
....+. .++|+++.|+||++||+++ +|.+++....+..... .... + ...+..|..
T Consensus 199 ~~~pl~----~GaDivv~S~tK~lgg~G~~i~G~vv~~~~~~~~~~--~~~~-----~----~~~~~~~~~~~~~~~~~~ 263 (436)
T PRK07812 199 LIRPLE----HGADIVVHSATKYLGGHGTAIAGVIVDGGTFDWTQG--RFPG-----F----TTPDPSYHGVVFAELGPP 263 (436)
T ss_pred cCCchh----cCCCEEEEecccccCCCCCeEEEEEEcCCccccccc--cccc-----c----ccCCcccccchhhhcchh
Confidence 543332 2899999999999998754 6666664332111111 0000 0 000111110
Q ss_pred ----cc--cccccCCC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C--------
Q 038499 347 ----DI--EERESGGT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-------- 408 (609)
Q Consensus 347 ----~~--~~r~~~gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-------- 408 (609)
.. ..+...|. .+-. .+. +.+.....++...++..+.+..+.+.|+++|.++ |+-|. +
T Consensus 264 ~~~~~~~~~~~~~~G~~l~p~---~a~--l~~rgl~tL~~R~~~~~~nA~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~ 338 (436)
T PRK07812 264 AYALKARVQLLRDLGSAISPF---NAF--LIAQGLETLSLRIERHVANAQRVAEFLEARDEVASVNYAGLPSSPWYERAK 338 (436)
T ss_pred HHHHHHHHHHHHhcCCCCCHH---HHH--HHhcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHH
Confidence 00 00001111 1111 111 1111223456667778888999999999999874 44441 1
Q ss_pred ----CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHH
Q 038499 409 ----TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQ 481 (609)
Q Consensus 409 ----~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~ 481 (609)
....++++|.+.. +. .....+.+.| +.+.+.+.-|...+ .|.......+..+...
T Consensus 339 ~~~~~g~gg~~sf~l~~-~~---------------~~~~~f~~~l-~l~~~a~slG~~~sLi~~p~~~~h~~~~~~~~~- 400 (436)
T PRK07812 339 RLAPKGTGAVLSFELAG-GV---------------EAGKAFVNAL-TLHSHVANIGDVRSLVIHPASTTHSQLTPEEQL- 400 (436)
T ss_pred HhCcCCCceEEEEEecC-CH---------------HHHHHHHHhC-CcceEecccCCCcceeeCCCCCCcccCCHHHHH-
Confidence 1135688888864 21 1234555555 45555554443222 1221111122222211
Q ss_pred HHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccc
Q 038499 482 IRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRF 528 (609)
Q Consensus 482 ~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~ 528 (609)
..|+.++.||||++. |+.+.+++-|+..++...+|
T Consensus 401 --------~~gi~~~liRlSvGl----Ed~~dli~dl~~Al~~~~~~ 435 (436)
T PRK07812 401 --------ATGVTPGLVRLAVGI----EGIDDILADLEAGFAAAKAF 435 (436)
T ss_pred --------hcCCCCCeEEEEecc----CCHHHHHHHHHHHHHhhhcc
Confidence 246778999999996 45666666666666554443
|
|
| >TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-20 Score=195.37 Aligned_cols=333 Identities=14% Similarity=0.080 Sum_probs=207.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
...+++++++++++|.+ ++++| +|+++++..++.+++ ++||| +|++++++|+++..++..
T Consensus 31 ~~~~~~e~~la~~~g~~---~~v~~-~sgt~aL~~~l~al~--------------~~pGd--~Viv~~~t~~~~~~~~~~ 90 (376)
T TIGR02379 31 PFSRRCETWLENRTGTK---KALLT-PSCTAALEMAALLLD--------------IQPGD--EVIMPSYTFVSTANAFVL 90 (376)
T ss_pred HHHHHHHHHHHHHhCCC---eEEEe-CCHHHHHHHHHHHcC--------------CCCcC--EEEECCCCcHHHHHHHHH
Confidence 35678889999998874 68888 566778888877765 57899 799999999999999999
Q ss_pred cCceEEEEecCCC-CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccc
Q 038499 201 SLAEVVEIGLDDD-GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 201 ~G~~vv~v~~~~~-g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~i 279 (609)
.|++++.++++++ +.+|+++++++++ +++++|+ ++|++|...|+++|.++|++||+++|+|++|+.+.. .
T Consensus 91 ~G~~~v~vd~d~~~~~~d~~~le~~i~-----~~tk~Ii---p~~~~G~~~d~~~I~~la~~~~i~vIeDaa~~~g~~-~ 161 (376)
T TIGR02379 91 RGAKIVFVDIRPDTMNIDETLIESAIT-----HRTKAIV---PVHYAGVACDMDTIMALANKHQLFVIEDAAQGVMST-Y 161 (376)
T ss_pred cCCEEEEEecCCCcCCCCHHHHHHhcC-----cCceEEE---EeCCCCCccCHHHHHHHHHHCCCEEEEECccccCCc-c
Confidence 9999999999875 5799999999998 6889875 556899999999999999999999999999988754 2
Q ss_pred cCCCCCCCCccEEEEcCCC--CCC-CCCCcEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccCC
Q 038499 280 DVRSGQTDGYDAIFLSTHK--FLG-GPGSPGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG 355 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK--~lg-gp~g~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~g 355 (609)
+-++... -.|+.++|+|+ .+. |+. .|+++++ +++ .+++.+....|....... +. ....| .-...|
T Consensus 162 ~~~~~g~-~~~~~~fSf~~~K~l~~g~~-gG~v~~~~~~~--~~~~~~~~~~g~~~~~~~-~~-~~~~~-----~~~~~g 230 (376)
T TIGR02379 162 KGRALGS-IGHLGTFSFHETKNYTSGGE-GGALLINDQAF--IERAEIIREKGTNRSQFF-RG-EVDKY-----TWRDIG 230 (376)
T ss_pred CCcccCC-CCCEEEEeCCCCCcCcccCC-ceEEEECCHHH--HHHHHHHHHhCCCCcccc-cc-CCCcc-----eeeeec
Confidence 3333211 22777787764 444 334 4777776 444 334444333222100000 00 00000 000112
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC--c-eEEeCCCCCCCcceEEEEeccCCCCCcCCCCC
Q 038499 356 TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ--N-IKILGNTSTKRQAILSFNIHSSTINSSLGENT 432 (609)
Q Consensus 356 tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p--~-i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~ 432 (609)
...-+.-+.|++-.. +....+.+.++.++.++++.+.|+.++ + +.+....+.....+..|.+.-...
T Consensus 231 ~n~~~~~~~Aa~g~~--qL~~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-------- 300 (376)
T TIGR02379 231 SSYLPSELQAAYLWA--QLEQADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDE-------- 300 (376)
T ss_pred ccCCccHHHHHHHHH--HHHHhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCc--------
Confidence 211111122222211 222356677777888888889987764 2 333221111122222232221010
Q ss_pred CCCCCCCCChHHHHHHHhhhcCcEeccCcccCC--hhhhhhc--CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCH
Q 038499 433 KTETDKPLHGPFVATLLNDLFGIQARGGCACAG--PYGHHLL--DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSN 508 (609)
Q Consensus 433 ~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~--p~~~~ll--~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ 508 (609)
.+.+++.+.|.+ .||.++.+..... |+...+. .-+.+.++++ ....+.|.++..+|+
T Consensus 301 -------~~r~~l~~~L~~-~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~-----------~~~~l~LP~~~~l~~ 361 (376)
T TIGR02379 301 -------DDRNELIKYLKE-QEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKE-----------SERLVRLPLYYGLSK 361 (376)
T ss_pred -------CCHHHHHHHHHH-CCCCccccCcCCCcchhHHhhCCCCCCChHHHHH-----------HhceEEccCCCCCCH
Confidence 357889999966 5999885432111 1100010 1112333332 247899999999999
Q ss_pred HHHHHHHHHHHHHH
Q 038499 509 EEFEFTLEALEFIA 522 (609)
Q Consensus 509 eeid~ll~al~~v~ 522 (609)
+|+++++++|+.+.
T Consensus 362 ~~~~~i~~~i~~~~ 375 (376)
T TIGR02379 362 EDQARVIQTICDYL 375 (376)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998864
|
This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041). |
| >TIGR01328 met_gam_lyase methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=202.07 Aligned_cols=306 Identities=16% Similarity=0.139 Sum_probs=197.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH--
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW-- 198 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (609)
....++++.+++++|++. . +++++|+. ++..++..+ +++|| .|+++...|.+....+
T Consensus 59 p~~~~le~~lA~l~g~~~--a-v~~~sG~~-Ai~~~l~al---------------~~~Gd--~Vi~~~~~y~~t~~~~~~ 117 (391)
T TIGR01328 59 PTVSNLEGRIAFLEGTEA--A-VATSSGMG-AIAATLLTI---------------LKAGD--HLISDECLYGCTFALLEH 117 (391)
T ss_pred chHHHHHHHHHHHhCCCc--E-EEECCHHH-HHHHHHHHH---------------hCCCC--EEEEecCcchHHHHHHHH
Confidence 346789999999999863 3 45557875 566665554 47888 6888888887655443
Q ss_pred --HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 199 --RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 199 --~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
...|++++.++.+ |+++++++++ +++++|++++++||+|.+.|+++|+++||++|+++++|++++.+.
T Consensus 118 ~~~~~G~~~~~vd~~-----d~e~l~~~i~-----~~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~ 187 (391)
T TIGR01328 118 ALTKFGIQVDFINMA-----IPEEVKAHIK-----DNTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPM 187 (391)
T ss_pred HHhcCCeEEEEECCC-----CHHHHHHhhc-----cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhc
Confidence 4479999999875 7999999997 689999999999999999999999999999999999999998765
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
....+. .++|++++|++|++||++. .|+++.++++ ++.+... ..+...
T Consensus 188 ~~~~~~----~g~Divv~S~sK~lgg~g~~~gG~v~~~~~l--i~~l~~~------------------------~~~~~~ 237 (391)
T TIGR01328 188 LTNPVA----LGVDVVVHSATKYIGGHGDVVAGLICGKAEL--LQQIRMV------------------------GIKDMT 237 (391)
T ss_pred cCCchh----cCCCEEEccccccccCCCCceEEEEEcCHHH--HHHHHHH------------------------HHHhCC
Confidence 433322 2789999999999998875 5888888776 2222110 000011
Q ss_pred C-C-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcceEEEE
Q 038499 355 G-T-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAILSFN 418 (609)
Q Consensus 355 g-t-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~~f~ 418 (609)
| . .++.+ .+... .........++.+++++++.+.|+++|+++ ++-|.- ....++++|.
T Consensus 238 g~~l~~~~a----~l~l~--~L~tl~~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~ 311 (391)
T TIGR01328 238 GSVISPFDA----WLILR--GLKTLNIRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFE 311 (391)
T ss_pred CCCCCcHHH----HHHHh--CcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEE
Confidence 1 1 11111 11111 112344556677788999999999998875 333321 1135688888
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCC
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKP 495 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~ 495 (609)
+.+ +. -....+.+.| +.+.+.+.-|...+ .|.......+.++... ..|+.+
T Consensus 312 ~~~-~~---------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~---------~~gi~~ 365 (391)
T TIGR01328 312 LKG-GF---------------AGAKKLLNNL-KLIRLAVSLGDAETLIQHPASMTHAVVPKEERE---------AAGITD 365 (391)
T ss_pred eCC-CH---------------HHHHHHHHhC-CcceEecCCCCCcccCcCCCccccccCCHHHHH---------hcCCCC
Confidence 764 21 1133455555 44555555554322 1211111122221111 245668
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 496 GWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 496 g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
+.||||++. |+.+.+++-|+..++
T Consensus 366 ~liR~svGl----E~~~dl~~dl~~al~ 389 (391)
T TIGR01328 366 GMIRLSVGL----EDADDLIADLKQALD 389 (391)
T ss_pred CeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 999999996 445555555555543
|
This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine. |
| >PLN02607 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=99.87 E-value=6e-20 Score=199.41 Aligned_cols=354 Identities=15% Similarity=0.117 Sum_probs=223.5
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcC-Ccc-----CCCCCCchhhHHHHHHHHHHHHHHHHHh----C----CCCCCcE
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLP-FYG-----NTHTCDSYVGQHTTNMVHEASNYIKKCL----G----GGQEDAM 142 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~-~~~-----n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g----~~~~~~v 142 (609)
.+|-|..+.+..+...+++.+.+.... .+. ..+...++.. .....++|+.+++++ | .+++ +|
T Consensus 48 g~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~---~~G~~~LR~aiA~~l~~~~~~~~~v~p~-~I 123 (447)
T PLN02607 48 GVIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQD---YHGLKSFRQAMASFMEQIRGGKARFDPD-RI 123 (447)
T ss_pred ceEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCC---CcchHHHHHHHHHHHHHhcCCCCCcCHH-He
Confidence 478888888888888888888775431 000 1111011110 112344555555554 3 4554 89
Q ss_pred EEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH-HcCceEEEEecCC--CCCCCHH
Q 038499 143 IFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR-QSLAEVVEIGLDD--DGLLDIE 219 (609)
Q Consensus 143 ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~--~g~ld~e 219 (609)
++| +|+++++..++..+. .||| .|+++.+.|+.+...++ ..|++++.|+.+. ++.+|++
T Consensus 124 vit-~G~t~al~~l~~~l~---------------~pGD--~Vlv~~P~Y~~f~~~~~~~~g~~vv~v~~~~~~~f~~~~~ 185 (447)
T PLN02607 124 VLT-AGATAANELLTFILA---------------DPGD--ALLVPTPYYPGFDRDLRWRTGVKIVPIHCDSSNNFQVTPQ 185 (447)
T ss_pred EEc-CChHHHHHHHHHHhC---------------CCCC--EEEEcCCCCcchHHHHHhcCCcEEEEEeCCCCCCCcCCHH
Confidence 988 899999999887763 7899 69999999998877776 4799999999874 3468999
Q ss_pred HHHHHHhhhcc-CCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCC----CC--
Q 038499 220 ALRSKLELYKD-AKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRS----GQ-- 285 (609)
Q Consensus 220 ~L~~al~~~~~-~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~----~~-- 285 (609)
++++++++... ..++|++++++|+||||.+.+ +++|.++|++||+++|+|++++.... ...+.. ..
T Consensus 186 ~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~ 265 (447)
T PLN02607 186 ALEAAYQEAEAANIRVRGVLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYK 265 (447)
T ss_pred HHHHHHHHHHHhCCCeeEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCC
Confidence 99999874211 137889999999999999988 56788899999999999999764211 111110 00
Q ss_pred -CCCccEEEEcCCCCCCCCC-CcEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH
Q 038499 286 -TDGYDAIFLSTHKFLGGPG-SPGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362 (609)
Q Consensus 286 -~~~~D~v~~S~hK~lggp~-g~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~ 362 (609)
....-.++.|++|.+|.|+ .+|+++.. +.+. ..+... ..+ .+.+.+.+.
T Consensus 266 ~~~~~v~vi~s~SK~fg~~GlRvG~ivs~n~~l~--~~~~~~-------------------------~~~-~~~s~~~q~ 317 (447)
T PLN02607 266 GVAERVHIVYSLSKDLGLPGFRVGTIYSYNDKVV--TTARRM-------------------------SSF-TLVSSQTQH 317 (447)
T ss_pred CCcCcEEEEEcchhcCCCCcceEEEEEEcCHHHH--HHHHHH-------------------------hhc-CCCCHHHHH
Confidence 0122366789999998553 59999984 4441 111100 000 112233332
Q ss_pred HHHHHHHHHHHhc----CHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC
Q 038499 363 IRAALAFWVKEYI----GHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK 438 (609)
Q Consensus 363 ~~aal~~~~~~~~----g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (609)
+.+ -.+.+.. ..+..+++..+.++.+.+.|++. ++.+..+ ..+.|.|.-.+ .... ...
T Consensus 318 ~~~---~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-gi~~~~~----~ag~fvw~~L~-~~~~---------~~~ 379 (447)
T PLN02607 318 LLA---SMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRA-GIECLKG----NAGLFCWMNLS-PLLE---------TPT 379 (447)
T ss_pred HHH---HHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCcccC----CeeEEEEEEch-Hhhc---------CCC
Confidence 221 1122211 12344556666677788888876 6665543 34566665544 1100 000
Q ss_pred CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 439 PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 439 ~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
......+.+.|.++.||.+.+|..|... .+||+||+|.. .++++++..++.|
T Consensus 380 ~~~e~~l~~~ll~~~gV~v~pG~~f~~~---------------------------~~g~fRi~fa~-~~~~~l~~gl~Ri 431 (447)
T PLN02607 380 REGELALWDSILREVKLNISPGSSCHCS---------------------------EPGWFRVCFAN-MSEDTLEVALKRI 431 (447)
T ss_pred chhHHHHHHHHHHhCCEEEcCccccCCC---------------------------CCCEEEEEecc-CCHHHHHHHHHHH
Confidence 0112356666666679999999876521 26999999974 4689999999999
Q ss_pred HHHHHhcc
Q 038499 519 EFIAIYGQ 526 (609)
Q Consensus 519 ~~v~~~~~ 526 (609)
..+++.-.
T Consensus 432 ~~~l~~~~ 439 (447)
T PLN02607 432 HRFMDRRK 439 (447)
T ss_pred HHHHHHHH
Confidence 98886543
|
|
| >PRK06234 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=199.40 Aligned_cols=309 Identities=17% Similarity=0.187 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH---
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW--- 198 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--- 198 (609)
...++++.++++.|.+ .++++++|+. ++..++..+ +++|| .|+++++.|++....+
T Consensus 65 ~~~~Le~~iA~~~g~~---~~l~~~sG~~-Ai~~al~~l---------------l~~Gd--~Vl~~~~~y~~~~~~~~~~ 123 (400)
T PRK06234 65 TSTEVENKLALLEGGE---AAVVAASGMG-AISSSLWSA---------------LKAGD--HVVASDTLYGCTFALLNHG 123 (400)
T ss_pred cHHHHHHHHHHHhCCC---cEEEEcCHHH-HHHHHHHHH---------------hCCCC--EEEEecCccchHHHHHHHH
Confidence 3678999999999974 3455557776 566555444 47899 6888888888766543
Q ss_pred -HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHh--CCeEEEeccccCC
Q 038499 199 -RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGP 275 (609)
Q Consensus 199 -~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~vivD~A~~~~ 275 (609)
+..|++++.++.+ |+++++++++ ++++++++++++||||.+.|+++|+++||++ |+++++|++++.+
T Consensus 124 ~~~~G~~v~~vd~~-----d~e~l~~~i~-----~~tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~ 193 (400)
T PRK06234 124 LTRYGVEVTFVDTS-----NLEEVRNALK-----ANTKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTP 193 (400)
T ss_pred HhhCCeEEEEECCC-----CHHHHHHHhc-----cCCeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCch
Confidence 5579999999764 8999999998 6899999999999999999999999999997 9999999998877
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
.....+. .+.|+++.|++|+++|++. .|+++.++++ ++.+... +. .....
T Consensus 194 ~~~~~l~----~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~--~~~l~~~--~~--------------------~~~~g 245 (400)
T PRK06234 194 YIQRPLQ----LGADVVVHSATKYLNGHGDVIAGFVVGKEEF--INQVKLF--GI--------------------KDMTG 245 (400)
T ss_pred hcCCchh----hCCcEEEeeccccccCCCCceeEEEEecHHH--HHHHHHH--HH--------------------HHhcC
Confidence 5432221 2789999999999998763 5999998877 2222110 00 00000
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCcceEEEEe
Q 038499 354 GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQAILSFNI 419 (609)
Q Consensus 354 ~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~~~~~f~~ 419 (609)
...++... .+.. ....-.+...++..+++.++.+.|+++|.+. |+-|. + ....++++|.+
T Consensus 246 ~~l~p~~a----~l~~--~~l~tl~~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l 319 (400)
T PRK06234 246 SVIGPFEA----FLII--RGMKTLQIRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFEL 319 (400)
T ss_pred CCCCHHHH----HHHH--hccCcHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEe
Confidence 11111111 1111 1112344556667788888999999888773 44432 1 12355778887
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
.. +. -....+.+.| +.+++.+.-|...+ .|.......+.++... ..|+.++
T Consensus 320 ~~-~~---------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~ 373 (400)
T PRK06234 320 KG-GV---------------EEGKVVMNNV-KLATLAVSLGDAETLIQHPASMTHSPYTAEERK---------EAGISDG 373 (400)
T ss_pred cC-cH---------------HHHHHHHHhC-CcceEeccCCCCCceecCCccCCCCCCCHHHHH---------hcCCCCC
Confidence 64 21 1245677777 56788777775433 1322111122221111 1466789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 497 WTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.||||++.-..++=++.+.++|+.+
T Consensus 374 l~R~svGlE~~~dl~~dl~~al~~~ 398 (400)
T PRK06234 374 LVRLSVGLEDVDDIIADLKQALDLI 398 (400)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9999999765555555555555543
|
|
| >PRK07503 methionine gamma-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-20 Score=201.72 Aligned_cols=312 Identities=18% Similarity=0.181 Sum_probs=194.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH---
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS--- 197 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--- 197 (609)
....++++.+++++|++. .|++ +||+. ++..++..+ +++|| .|+++...|......
T Consensus 65 p~~~~le~~lA~l~g~~~--~i~~-~sG~~-Al~~~l~~l---------------l~~Gd--~Viv~~~~y~~t~~~~~~ 123 (403)
T PRK07503 65 PTLALLEQRMASLEGGEA--AVAL-ASGMG-AITATLWTL---------------LRPGD--EVIVDQTLYGCTFAFLHH 123 (403)
T ss_pred chHHHHHHHHHHHhCCCc--EEEE-cCHHH-HHHHHHHHH---------------cCCCC--EEEEccCccchHHHHHHH
Confidence 446789999999999863 4555 47776 577766554 47899 688888877654432
Q ss_pred -HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 198 -WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 198 -~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
++..|++++.++.+ |+++|+++++ ++|++|++++++||||.+.|+++|+++||++|+++++|++++.++
T Consensus 124 ~~~~~G~~v~~vd~~-----d~~~l~~~i~-----~~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~ 193 (403)
T PRK07503 124 GLGEFGVTVRHVDLT-----DPAALKAAIS-----DKTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPY 193 (403)
T ss_pred HHhhCCEEEEEeCCC-----CHHHHHHhcC-----ccCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 34579999998864 7999999998 689999999999999999999999999999999999999998765
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
....+. .++|+++.|++|+++|+++ .|+++.++++. ++++.... ......
T Consensus 194 ~~~~l~----~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~--~~l~~~~~----------------------~~~~g~ 245 (403)
T PRK07503 194 LQRPLE----LGADLVVHSATKYLGGHGDITAGLVVGGKALA--DRIRLEGL----------------------KDMTGA 245 (403)
T ss_pred cCCchh----hCCCEEEccccccccCCCceeEEEEEcCHHHH--HHHHhhhH----------------------HhCcCC
Confidence 433332 2789999999999998764 68888777662 22211000 000001
Q ss_pred CChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcceEEEEec
Q 038499 355 GTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAILSFNIH 420 (609)
Q Consensus 355 gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~~f~~~ 420 (609)
...++.+ ++... ...-.+...++..+++..+.+.|+++|.++ +.-|.- ..+.++++|.+.
T Consensus 246 ~~s~~~a----~l~l~--~L~tl~~r~~~~~~na~~~a~~L~~~p~v~~V~~P~l~~~~~~~~~~~~~~~~g~~~s~~~~ 319 (403)
T PRK07503 246 VMSPFDA----FLLMR--GLKTLALRMDRHCASAQAVAEWLARHPAVELVHYPGLPSFAQHALAQRQMALPGGMIAFELK 319 (403)
T ss_pred CCCHHHH----HHHHc--CcchHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEEC
Confidence 1112211 11111 111233444556678888889999888765 333311 114567888875
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
. +. .....+...| +.+.+.+.-|...+ .|.......+.++.. ...|+.++.
T Consensus 320 ~-~~---------------~~~~~~~~~l-~l~~~~~slG~~~sl~~~~~~~~h~~~~~~~~---------~~~gi~~~l 373 (403)
T PRK07503 320 G-GI---------------AAGRRFMNAL-QLFARAVSLGDAESLAQHPASMTHSTYTPEER---------AEHGISEGL 373 (403)
T ss_pred C-CH---------------HHHHHHHHhC-CcceeecccCCCCccCcCCCCCccccCCHHHH---------HhcCCCCCe
Confidence 4 21 0122333333 23333322222111 111111111221111 124677899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 498 TRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
||||+|.-..++=++.+.++|+.+..
T Consensus 374 iR~svGlE~~~dl~~dl~~Al~~~~~ 399 (403)
T PRK07503 374 VRLSVGLEDVADILADLAQALDACAV 399 (403)
T ss_pred EEEEEecCCHHHHHHHHHHHHHHHHH
Confidence 99999987666666666666665543
|
|
| >PRK08574 cystathionine gamma-synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.6e-20 Score=200.16 Aligned_cols=305 Identities=18% Similarity=0.124 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR 199 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (609)
.....++++.+++++|.+ +.+++ ++|+. |+..++..+ +++|| .|+++...|+++...++
T Consensus 52 np~~~~lE~~lA~l~g~~--~~l~~-~sG~~-Ai~~~l~~l---------------l~~GD--~Vlv~~~~y~~~~~~~~ 110 (385)
T PRK08574 52 NPTLRPLEEALAKLEGGV--DALAF-NSGMA-AISTLFFSL---------------LKAGD--RVVLPMEAYGTTLRLLK 110 (385)
T ss_pred CccHHHHHHHHHHHhCCC--cEEEe-CCHHH-HHHHHHHHH---------------hCCCC--EEEEcCCCchhHHHHHH
Confidence 345678999999999975 24444 46665 566665544 47899 79999999998876663
Q ss_pred ---HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 200 ---QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 200 ---~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
..|++++.+. +|++++++++++ .++++|++++++||||.+.|+++|+++||++|+++++|++++.|.
T Consensus 111 ~~~~~g~~v~~~~------~d~~~l~~~i~~----~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~ 180 (385)
T PRK08574 111 SLEKFGVKVVLAY------PSTEDIIEAIKE----GRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPL 180 (385)
T ss_pred HhhccCcEEEEEC------CCHHHHHHhcCc----cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 4588887764 368999999872 289999999999999999999999999999999999999998775
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEe-chhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
..-.+. .++|++++|+||+++||+. .|+++++ +++ .+.+... .+..
T Consensus 181 ~~~~l~----~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~--~~~~~~~-------------------------~~~~ 229 (385)
T PRK08574 181 LYRPLR----HGADFVVHSLTKYIAGHNDVVGGVAVAWSGEF--LEELWEW-------------------------RRRL 229 (385)
T ss_pred cCChhh----hCCcEEEeeCceeecCCCCceeEEEEECcHHH--HHHHHHH-------------------------HHhc
Confidence 432221 2789999999999998864 3756664 444 1221100 0000
Q ss_pred CCC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC--C-------------CCcceEE
Q 038499 354 GGT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS--T-------------KRQAILS 416 (609)
Q Consensus 354 ~gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~--~-------------~r~~~~~ 416 (609)
... .++.+ .+... ...-.+...++..+++.++.+.|+++|.++ |+-|.- . ...+.++
T Consensus 230 g~~~~p~~a----~l~l~--~l~tL~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s 303 (385)
T PRK08574 230 GTIMQPFEA----YLVLR--GLKTLEVRFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVS 303 (385)
T ss_pred CCCCCHHHH----HHHHc--ccCcHHHHHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEE
Confidence 111 11111 11111 112244455666778888899999888774 544421 1 1355778
Q ss_pred EEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 417 FNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
|.+.. +. -....+.+.| +.+.+.+.-|...+ .|+......+.++... ..|+
T Consensus 304 ~~l~~-~~---------------~~~~~~~~~l-~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~---------~~gi 357 (385)
T PRK08574 304 FRVKG-GR---------------DAVLKFLRSL-KLIKPSPSLGGVESLATYPVKSAASPIPEEDRK---------ALGI 357 (385)
T ss_pred EEeCC-CH---------------HHHHHHHHcC-CcceEccCCCCCcceeeCCCcCCcccCCHHHHH---------hcCC
Confidence 87754 11 1234455555 45555555554322 1222111122222111 1466
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 494 KPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 494 ~~g~iRls~~~~~t~eeid~ll~al 518 (609)
.++.||||++.-..++=++.+.++|
T Consensus 358 ~~~liR~svGlE~~~dli~dl~~al 382 (385)
T PRK08574 358 TEDLVRLSVGLEDVEDLIEDLDQAL 382 (385)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHH
Confidence 7899999999754333344444443
|
|
| >PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=200.28 Aligned_cols=165 Identities=18% Similarity=0.114 Sum_probs=128.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 116 GQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 116 ~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
++......+++++.++++.|++ +.|+|+ ||++ ++..++..+ +++|| +|++++.+|.+..
T Consensus 64 ~r~~~pt~~~le~~la~l~g~~--~~v~fs-SG~~-Ai~~al~~l---------------l~~Gd--~VI~~~~~y~~t~ 122 (437)
T PRK05613 64 SRLTNPTVEALENRIASLEGGV--HAVAFA-SGQA-AETAAILNL---------------AGAGD--HIVTSPRLYGGTE 122 (437)
T ss_pred eCccChHHHHHHHHHHHHhCCC--eEEEeC-CHHH-HHHHHHHHh---------------cCCCC--EEEECCCccHHHH
Confidence 3334556788999999999985 367776 8886 455554443 47899 7999999999885
Q ss_pred HH----HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecc
Q 038499 196 LS----WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 196 ~~----~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A 271 (609)
.. +...|+++++++ +. .|+++++++|+ ++|+++++++++|++|.+.|+++|+++||++|+++|+|++
T Consensus 123 ~~~~~~l~~~Gi~v~~vd-~~---~d~e~l~~~l~-----~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t 193 (437)
T PRK05613 123 TLFLVTLNRLGIEVTFVE-NP---DDPESWQAAVQ-----PNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNT 193 (437)
T ss_pred HHHHHHHHhcCeEEEEEC-CC---CCHHHHHHhCC-----ccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECC
Confidence 43 356799999997 32 28999999998 6899999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEE-ech
Q 038499 272 ASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLM-TKA 314 (609)
Q Consensus 272 ~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~-~~~ 314 (609)
++.|.....+ .+ |+|++++|+||+++|++ ++|.+++ ++.
T Consensus 194 ~a~g~~~~p~-~~---GaDivv~S~~K~l~G~gd~~gG~vv~~~~ 234 (437)
T PRK05613 194 IATAALVRPL-EL---GADVVVASLTKFYTGNGSGLGGVLIDGGK 234 (437)
T ss_pred CccccccChH-Hh---CCCEEEeeccceecCCCcceeEEEEecCc
Confidence 9877553222 22 88999999999999764 3455554 443
|
|
| >PRK06855 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.87 E-value=9.2e-20 Score=197.95 Aligned_cols=349 Identities=14% Similarity=0.047 Sum_probs=208.6
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccch
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
+.|..+.+++.+.+.. .....|....+..++++.+.+++.+..| .+++ +|++| +|++++|..++. +
T Consensus 48 ~~p~~~~~a~~~~~~~----~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~-~I~it-~G~~~al~~~~~-l----- 115 (433)
T PRK06855 48 KIPDWMKEIVAELVMD----DKSYGYCPTKGVLETREFLAELNNKRGGAQITPD-DIIFF-NGLGDAIAKIYG-L----- 115 (433)
T ss_pred CCCHHHHHHHHHHhhc----CCCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHh-HEEEc-CcHHHHHHHHHH-h-----
Confidence 5666777777665532 1111121222223333334444433334 4554 89998 899989988765 3
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHH-HHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecc
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSW-RQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSAC 242 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~ 242 (609)
+.+|| .|++..+.|+.+.... ...|++++.+++++ +..+|+++|++++++. ++++++++++|
T Consensus 116 ----------~~~Gd--~Vlv~~P~Y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~---~~~~~i~l~~P 180 (433)
T PRK06855 116 ----------LRREA--RVIGPSPAYSTHSSAEAAHAGYPPVTYRLDPENNWYPDLDDLENKVKYN---PSIAGILLINP 180 (433)
T ss_pred ----------cCCCC--eEEEeCCCCchHHHHHHHhcCCeEEEEecccccCCCCCHHHHHHHHhcC---CCceEEEEECC
Confidence 36888 6999999998765432 34588999999874 3468999999999631 36788999999
Q ss_pred cCccccccCH---HHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEec-
Q 038499 243 SNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTK- 313 (609)
Q Consensus 243 sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~- 313 (609)
+||||.+.+. ++|+++|++||+++|+|++++.-. ....+.....++..+++.|++|.++.| ..+|+++++.
T Consensus 181 ~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGlRiG~ii~p~~ 260 (433)
T PRK06855 181 DNPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGSRCGWIEVYNA 260 (433)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcceEEEEEEeCC
Confidence 9999999885 567888999999999999965321 111111111112347888999999755 4599999842
Q ss_pred ---h-hhc-cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh---cCHHHHHHHHH
Q 038499 314 ---A-LYQ-LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY---IGHEVIKKQEE 385 (609)
Q Consensus 314 ---~-~~~-l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~---~g~~~i~~~~~ 385 (609)
. +.. ++.+.. ......+++.+.+. ++..++ .+. ...+.++...+
T Consensus 261 ~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~Q~--a~~~~l-~~~~~~~~~~~~~~~~~ 312 (433)
T PRK06855 261 DKDEVFKKYINSILN-------------------------AKMIEVCSTTLPQM--AIPRIM-SHPEYKNYLKERNKRYE 312 (433)
T ss_pred chhhHHHHHHHHHHH-------------------------hhccccCCChHHHH--HHHHhh-cCCcHHHHHHHHHHHHH
Confidence 1 100 111100 00011123333332 222222 221 12445566677
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCC-CCC----------CCCCCCChHHHHHHHhhhcC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGEN-TKT----------ETDKPLHGPFVATLLNDLFG 454 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~-~~~----------~~~~~l~~~~v~~~L~~~~G 454 (609)
+.++.+.+.|.+++++.+..+ ..+++.|...+.......+.. .++ ..+...+..+++..|.++.|
T Consensus 313 ~r~~~~~~~L~~~~~~~~~~p----~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g 388 (433)
T PRK06855 313 KRSNIAYEKLKDVPGLKVNRT----NGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTG 388 (433)
T ss_pred HHHHHHHHHHhcCCCeeccCC----CeeEEEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcC
Confidence 778888899988777766544 446666665541100000000 000 00000124456655556689
Q ss_pred cEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 455 IQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 455 I~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
|.+.+|..|. +. ..++|||+.. .++++++..++.|.+++++
T Consensus 389 V~v~PG~~F~-~~---------------------------~~~~Rls~~~-~~~~~i~~~~~~l~~~~~~ 429 (433)
T PRK06855 389 ICVVPLSSFC-TE---------------------------LNGFRVTLLE-RDEEKFEWIYQTLAEKIEE 429 (433)
T ss_pred EEEecCCcCC-CC---------------------------CCceEEEECC-CcHHHHHHHHHHHHHHHHH
Confidence 9999998764 11 2358999975 4789999999999988864
|
|
| >TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.6e-20 Score=197.20 Aligned_cols=305 Identities=16% Similarity=0.133 Sum_probs=195.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH-
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ- 200 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~- 200 (609)
...++++.++++.|.+ +++++ +|++++|..++..+ +++|| +|+++...|.++...+..
T Consensus 52 ~~~~le~~lA~l~g~~---~v~~~-~gg~~Ai~~~l~al---------------l~~GD--~Vl~~~p~y~~~~~~~~~~ 110 (382)
T TIGR02080 52 TRDLLQQALAELEGGA---GAVVT-NTGMSAIHLVTTAL---------------LGPDD--LLVAPHDCYGGTYRLLNAL 110 (382)
T ss_pred hHHHHHHHHHHHhCCC---cEEEE-cCHHHHHHHHHHHH---------------cCCCC--EEEEcCCCcHHHHHHHHHH
Confidence 3667899999999952 57777 67777899888776 47898 799999999876655433
Q ss_pred ---cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc
Q 038499 201 ---SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277 (609)
Q Consensus 201 ---~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~ 277 (609)
.++++..++. .|+++++++++ +++++|++++++||||.+.|+++|+++||++|+++++|++++.+..
T Consensus 111 ~~~~~~~v~~~d~-----~d~~~l~~ai~-----~~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~ 180 (382)
T TIGR02080 111 AKKGCFRVLFVDQ-----GDEQALRAALA-----QKPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPAL 180 (382)
T ss_pred HhhcCeEEEEECC-----CCHHHHHHhcC-----cCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCccccc
Confidence 2466666542 38999999998 6899999999999999999999999999999999999999887654
Q ss_pred cccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCC
Q 038499 278 EIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG 355 (609)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~g 355 (609)
..++. .++|+++.|++|+++|+.+ .|++++++... .+.+... +...|
T Consensus 181 ~~pl~----~gaDivv~S~sK~l~G~~~~~~G~i~~~~~~~-~~~l~~~--------------------------~~~~g 229 (382)
T TIGR02080 181 QNPLA----LGADLVLHSCTKYLNGHSDVIAGAVIAKDPQV-AEELAWW--------------------------ANNLG 229 (382)
T ss_pred CCchh----hCCCEEEeecceeccCCCCceeEEEEeCCHHH-HHHHHHH--------------------------HHccC
Confidence 33332 2679999999999998765 68877754331 1222100 00111
Q ss_pred -ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCcceEEEEec
Q 038499 356 -TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQAILSFNIH 420 (609)
Q Consensus 356 -tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~~~~~f~~~ 420 (609)
+.+... +.+.. ....-+....++..+++..+.+.|+.+|.++ |+-|. + ....++++|.+.
T Consensus 230 ~~~sp~~---a~l~l--r~l~tl~~R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~ 304 (382)
T TIGR02080 230 VTGGAFD---SYLTL--RGLRTLVARMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELK 304 (382)
T ss_pred CCCCHHH---HHHHH--cccchHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEec
Confidence 111111 11111 1111233345566678888889999888875 44442 1 123568888886
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
. +. .....+.+.| +.+.+.+.-|..-+ .|.......+.++.. -..|+.++.
T Consensus 305 ~-~~---------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~---------~~~gi~~~l 358 (382)
T TIGR02080 305 G-GE---------------QTVRRFLGGL-SLFTLAESLGGVESLIAHPATMTHAAMGPEAR---------AEAGISDTL 358 (382)
T ss_pred C-cH---------------HHHHHHHHcC-CcceEeccCCCCcceeECCCccCcccCCHHHH---------HhcCCCcCe
Confidence 4 21 1123555556 45666666664222 122211112222111 124667899
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 498 TRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
||||++. |+.+.+++.|+..++
T Consensus 359 iRlsvGl----E~~~dl~~dl~~al~ 380 (382)
T TIGR02080 359 LRLSVGL----EDADDLIADLEQGLR 380 (382)
T ss_pred EEEEecc----CCHHHHHHHHHHHHh
Confidence 9999996 445555555555443
|
This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine. |
| >TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.1e-20 Score=197.16 Aligned_cols=303 Identities=17% Similarity=0.168 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH--
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-- 197 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-- 197 (609)
.....++++.+++++|++ .++++++|+. ++..++.++ +++|| .|+++...|.+....
T Consensus 53 ~p~~~~le~~la~l~g~~---~~~~~~sG~~-Ai~~al~al---------------~~~Gd--~Vl~~~~~~~~t~~~~~ 111 (380)
T TIGR01325 53 NPTVAAFEERIAALEGAE---RAVATATGMS-AIQAALMTL---------------LQAGD--HVVASRSLFGSTVGFIS 111 (380)
T ss_pred CchHHHHHHHHHHHhCCC---cEEEECCHHH-HHHHHHHHH---------------hCCCC--EEEEecCCcchHHHHHH
Confidence 345788999999999984 3455656665 566665554 37888 588888888765433
Q ss_pred --HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 198 --WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 198 --~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
....|++++.++.+ |+++++++++ +++++|++++++||+|.+.|+++|.++||++|+++++|++++.+
T Consensus 112 ~~~~~~g~~v~~v~~~-----d~~~l~~~i~-----~~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~ 181 (380)
T TIGR01325 112 EILPRFGIEVSFVDPT-----DLNAWEAAVK-----PNTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATP 181 (380)
T ss_pred HHHHHhCCEEEEECCC-----CHHHHHHhcC-----CCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccc
Confidence 34579999998864 7899999887 68999999999999999999999999999999999999998765
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
.....+ + .++|+++.|+||+++|++. .|+++.++++ ++.+.... +..
T Consensus 182 ~~~~pl-~---~g~Divv~S~sK~l~g~g~~~gG~vv~~~~~--~~~l~~~~-------------------------~~~ 230 (380)
T TIGR01325 182 VLQQPL-K---LGADVVVYSATKHIDGQGRVMGGVIAGSEEL--MAEVAVYL-------------------------RHT 230 (380)
T ss_pred ccCCch-h---hCCCEEEeeccceecCCCCeEEEEEEeCHHH--HHHHHHHH-------------------------Hhh
Confidence 332222 1 2789999999999998753 3778877776 22221110 000
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCcceEEEEe
Q 038499 354 GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQAILSFNI 419 (609)
Q Consensus 354 ~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~~~~~f~~ 419 (609)
.++..-.. +.+. +......+...++..+.+.++.+.|+++|+++ |.-|. + ....++++|.+
T Consensus 231 g~~~~p~~---a~~~--l~~l~tl~~r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l 305 (380)
T TIGR01325 231 GPAMSPFN---AWVL--LKGLETLSLRMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDV 305 (380)
T ss_pred CCCCCHHH---HHHH--HhccCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEE
Confidence 11111111 1111 11222344556677778888899999988775 33331 1 11356788877
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
.. . .....+.+.| +.+.+.+.-|...+ .|+......+.++... ..|+.++
T Consensus 306 ~~-~----------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~~~ 358 (380)
T TIGR01325 306 AD-R----------------AAAWKVLDAV-ELVSITNNLGDAKSTITHPATTTHGRMQPEERA---------AAGIGDG 358 (380)
T ss_pred CC-H----------------HHHHHHHHcC-CcceEcccCCCCCeeeeCCCccCcccCCHHHHH---------hcCCCCC
Confidence 53 1 1234555555 44555555554222 1322211122221111 2467789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHH
Q 038499 497 WTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~~ 520 (609)
.||||++.- +.+.+++-|++
T Consensus 359 liR~svGlE----~~~dl~~dl~~ 378 (380)
T TIGR01325 359 LVRLSVGLE----DVDDLIADLKR 378 (380)
T ss_pred eEEEEeccC----CHHHHHHHHHh
Confidence 999999964 44445554443
|
This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis. |
| >PRK07671 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-20 Score=196.24 Aligned_cols=304 Identities=16% Similarity=0.159 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW- 198 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (609)
.....++++.++++.|++. .++ +++|+. ++..++.. +++|| .|+++...|++....+
T Consensus 49 ~p~~~~Le~~lA~l~g~~~--~~~-~~sG~a-ai~~~~~~----------------l~~Gd--~Viv~~~~y~~~~~~~~ 106 (377)
T PRK07671 49 NPTRAALEELIAVLEGGHA--GFA-FGSGMA-AITAVMML----------------FSSGD--HVILTDDVYGGTYRVMT 106 (377)
T ss_pred ChHHHHHHHHHHHHhCCCc--eEE-eCCHHH-HHHHHHHH----------------hCCCC--EEEECCCccchHHHHHH
Confidence 3457789999999999863 455 568875 56655432 47898 6899999888665433
Q ss_pred ---HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 199 ---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 199 ---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
...|++++.++.. |+++++++++ +++++|++++|+||||.+.|+++|.++||++|+++++|++++.+
T Consensus 107 ~~~~~~G~~v~~v~~~-----d~~~l~~ai~-----~~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~ 176 (377)
T PRK07671 107 KVLNRFGIEHTFVDTS-----NLEEVEEAIR-----PNTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTP 176 (377)
T ss_pred HHHhcCCeEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCcc
Confidence 3469999998743 8999999998 68999999999999999999999999999999999999998765
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
+....+. .++|+++.|++|++|||.+ .|+++++++.. .+.+... ....
T Consensus 177 ~~~~p~~----~g~Divv~S~sK~l~G~~~~~~G~~v~~~~~l-~~~~~~~-------------------------~~~~ 226 (377)
T PRK07671 177 YWQSPIS----LGADIVLHSATKYLGGHSDVVAGLVVVNSPEL-AEDLHFV-------------------------QNST 226 (377)
T ss_pred ccCChhh----hCCeEEEecCcccccCCccceeEEEEeCcHHH-HHHHHHH-------------------------HHhh
Confidence 4432221 2779999999999999864 57777754321 1222110 0000
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcceEEEEe
Q 038499 354 GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAILSFNI 419 (609)
Q Consensus 354 ~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~~f~~ 419 (609)
.+..+... +.+.. ....-.....++.++.+..+.+.|++.|++. ++.|.- ....++++|.+
T Consensus 227 g~~~~~~~---a~l~~--~~l~tl~~R~~~~~~na~~la~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~ 301 (377)
T PRK07671 227 GGILGPQD---SWLLL--RGLKTLGIRMEEHETNSRAIAEFLNNHPAVNKVYYPGLPSHPNHELAKEQANGFGGMISFDV 301 (377)
T ss_pred cCCCCHHH---HHHHH--cCcChHHHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEe
Confidence 11111111 11111 0111233455666778888889998888774 444421 11356788877
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
. +. -....+...| +.+.+.+.-|..++ .|......++..+... ..|+.++
T Consensus 302 -~-~~---------------~~~~~f~~~l-~l~~~~~s~G~~~sl~~~~~~~~~~~~~~~~~~---------~~gi~~~ 354 (377)
T PRK07671 302 -G-SE---------------ETANKVLERL-QYFTLAESLGAVESLISIPSQMTHASIPADRRK---------ELGITDG 354 (377)
T ss_pred -C-CH---------------HHHHHHHHhC-CcceEccCCCCCCeEeECCCccccccCCHHHHH---------hcCCCCC
Confidence 4 21 1233444555 45555666665432 1221111222222211 2467789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 497 WTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.||||++.- |.+.+++-|+..
T Consensus 355 liR~svGlE----~~~dl~~dl~~a 375 (377)
T PRK07671 355 LIRISVGIE----DGEDLIEDLAQA 375 (377)
T ss_pred eEEEEeccC----CHHHHHHHHHHH
Confidence 999999964 455555555443
|
|
| >PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.8e-20 Score=197.61 Aligned_cols=158 Identities=18% Similarity=0.173 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH--
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW-- 198 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (609)
.....+++.++++.|++ ..+++++|+. ++..++..+ +++|| .|+++...|+.....+
T Consensus 64 p~~~~Le~~lA~leg~~---~al~~~sG~~-Ai~~al~~l---------------l~~GD--~Vlv~~~~y~~t~~~~~~ 122 (431)
T PRK08248 64 PTTDVFEKRIAALEGGI---GALAVSSGQA-AITYSILNI---------------ASAGD--EIVSSSSLYGGTYNLFAH 122 (431)
T ss_pred chHHHHHHHHHHHhCCC---cEEEECCHHH-HHHHHHHHH---------------hCCCC--EEEEccCchhhHHHHHHH
Confidence 34677899999999964 3355557775 565555443 37899 6999998888765544
Q ss_pred --HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 199 --RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 199 --~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
+..|++++.++.. |+++++++++ +++++|++++++||||.+.|+++|+++||++|+++|+|++++.|.
T Consensus 123 ~~~~~Gv~v~~vd~~-----d~e~l~~ai~-----~~tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~ 192 (431)
T PRK08248 123 TLPKLGITVKFVDPS-----DPENFEAAIT-----DKTKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPY 192 (431)
T ss_pred HHHhCCEEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCccc
Confidence 4579999999863 8999999998 689999999999999999999999999999999999999988665
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC-cEEEEEec
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS-PGILLMTK 313 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~L~~~~ 313 (609)
...++ . .++|+++.|+||++||++. +|.+++..
T Consensus 193 ~~~pl-~---~gaDivv~S~tK~lgg~g~~~Gg~v~~~ 226 (431)
T PRK08248 193 LLRPI-E---HGADIVVHSATKFIGGHGTSIGGVIVDS 226 (431)
T ss_pred cCChh-H---cCCCEEEEcCccccCCCCCceEEEEEeC
Confidence 44433 2 3899999999999998863 77777643
|
|
| >PRK07590 L,L-diaminopimelate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-19 Score=195.82 Aligned_cols=344 Identities=12% Similarity=0.017 Sum_probs=206.7
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh------CCCCCCcEEEeCChH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL------GGGQEDAMIFCGSGT 149 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~------g~~~~~~vift~sGt 149 (609)
.++.++.+... +.++.+.+++.+.+.....+.....|....+ ..++|+.+++++ +.+++ +|++| +|+
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G----~~~LR~aia~~~~~~~g~~~~~~-~I~it-~Ga 108 (409)
T PRK07590 35 KIIRLGIGDVTQPLPPAVIEAMHKAVDEMGTAETFRGYGPEQG----YDFLREKIAENDYQARGCDISAD-EIFIS-DGA 108 (409)
T ss_pred ceEEecCcCCCCCCCHHHHHHHHHHHhcccccCCccCCCCCCC----CHHHHHHHHHHHHHhcCCcCChh-hEEEC-CCH
Confidence 34555444332 3456677888776654311111111111112 345666666654 46665 89998 899
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCce-----------EEEEecCCCCCCCH
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAE-----------VVEIGLDDDGLLDI 218 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~-----------vv~v~~~~~g~ld~ 218 (609)
++++..+... +.+|| .|++..+.|+.+...++..|++ ++.++++.++.+.+
T Consensus 109 ~~al~~l~~~----------------~~~gd--~V~v~~P~Y~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~ 170 (409)
T PRK07590 109 KCDTGNILDI----------------FGPDN--TIAVTDPVYPVYVDTNVMAGRTGEANEDGRYSGIVYLPCTAENNFVP 170 (409)
T ss_pred HHHHHHHHHh----------------cCCCC--EEEEeCCCCcchHHHHHHcCCcccccccccccceeEeecccccCCcc
Confidence 9998876543 36888 6999999999999889999987 88999875432322
Q ss_pred HHHHHHHhhhccCCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCC-CCcc
Q 038499 219 EALRSKLELYKDAKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQT-DGYD 290 (609)
Q Consensus 219 e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~-~~~D 290 (609)
+ +.+ ++++++++++++||||.+++. ++|+++|++||+++|+|++++.-. .+..+..... .+.-
T Consensus 171 d-----~~~----~~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~v 241 (409)
T PRK07590 171 E-----LPE----EKVDIIYLCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECA 241 (409)
T ss_pred c-----Ccc----cCceEEEEeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccce
Confidence 2 111 478999999999999999885 457888999999999999976321 1111211110 1224
Q ss_pred EEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc-CCChhHHHHHHHHHH
Q 038499 291 AIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES-GGTPQVIQMIRAALA 368 (609)
Q Consensus 291 ~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~-~gtp~i~~~~~aal~ 368 (609)
+++.|++|.+|.|+ .+|++++++++ ++.+.. +... .....+.. ..... .+.+.+.+.+. ..
T Consensus 242 i~~~SfSK~~~~pGlRiG~~i~~~~l--i~~~~~---~~~~---------~~~~~~~~-~~~~~~~~~s~~~q~a~--~~ 304 (409)
T PRK07590 242 IEFRSFSKTAGFTGTRCAYTVVPKEL--KGKTSD---GEGV---------SLNSLWNR-RQSTKFNGVSYIVQRAA--EA 304 (409)
T ss_pred EEEecCccccCCcCceeEEEEcCHHH--hhhccc---cchh---------hhHHHHHH-HHhhcccCcCHHHHHHH--HH
Confidence 66789999997553 59999999888 332100 0000 00000000 00000 12333333222 12
Q ss_pred HHHHH--hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHH
Q 038499 369 FWVKE--YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVA 446 (609)
Q Consensus 369 ~~~~~--~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 446 (609)
++ .+ ....+.++++.++.++++.+.|+.+ ++++..+ ..+++.|...+ .. ++..+++
T Consensus 305 ~l-~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~~----~g~~f~wi~~~-~~---------------~~~~~~~ 362 (409)
T PRK07590 305 VY-SPEGKAQIKELIDYYMENAKIIREGLESA-GFEVYGG----VNAPYIWVKTP-DG---------------MSSWDFF 362 (409)
T ss_pred Hh-cCCcHHHHHHHHHHHHHHHHHHHHHHHhc-CCceecC----CcceEEEEECC-CC---------------CCHHHHH
Confidence 11 11 1123455666677788888888876 6766543 23444444444 11 3566777
Q ss_pred HHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 447 TLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 447 ~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+.|.++.||.+++|..|... ..+++||++. .++++++..++.|..+
T Consensus 363 ~~l~~~~gv~v~pg~~f~~~---------------------------~~~~iRi~~~--~~~~~l~~~l~rl~~~ 408 (409)
T PRK07590 363 DKLLQEANVVGTPGSGFGPS---------------------------GEGYFRLSAF--GSRENVLEAMERIKKA 408 (409)
T ss_pred HHHHHHCCEEEeChhHhCCC---------------------------CCCEEEEEcc--CCHHHHHHHHHHHHhh
Confidence 77767679999988765311 1479999963 5889999988888754
|
|
| >cd00615 Orn_deC_like Ornithine decarboxylase family | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-21 Score=197.47 Aligned_cols=223 Identities=17% Similarity=0.152 Sum_probs=163.3
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR 199 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (609)
+..+.++++.+++++|++. .++++ +|+++++..++..+ +++|| .|+++...|.++...+.
T Consensus 58 ~g~i~~~~~~~A~~~ga~~--~~~~~-~Gst~a~~~~l~al---------------~~~gd--~Vlv~~~~h~s~~~~~~ 117 (294)
T cd00615 58 TGPIKEAQELAARAFGAKH--TFFLV-NGTSSSNKAVILAV---------------CGPGD--KILIDRNCHKSVINGLV 117 (294)
T ss_pred ChHHHHHHHHHHHHhCCCC--EEEEc-CcHHHHHHHHHHHc---------------CCCCC--EEEEeCCchHHHHHHHH
Confidence 3458899999999999852 34446 78888888777665 47898 69999999999999999
Q ss_pred HcCceEEEEecCCC------CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecccc
Q 038499 200 QSLAEVVEIGLDDD------GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 200 ~~G~~vv~v~~~~~------g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~ 273 (609)
..|+++++++.+.+ +.+|++++++++++. +++++++++++ |++|.+.|+++|+++||++|+++++|+||+
T Consensus 118 ~~g~~~~~v~~~~~~~~~~~~~i~~~~l~~~l~~~---~~~k~v~l~~p-~~~G~~~dl~~I~~~~~~~g~~livDeA~~ 193 (294)
T cd00615 118 LSGAVPVYLKPERNPYYGIAGGIPPETFKKALIEH---PDAKAAVITNP-TYYGICYNLRKIVEEAHHRGLPVLVDEAHG 193 (294)
T ss_pred HCCCEEEEecCccCcccCcCCCCCHHHHHHHHHhC---CCceEEEEECC-CCCCEecCHHHHHHHHHhcCCeEEEECcch
Confidence 99999999976532 478999999999742 46899999987 789999999999999999999999999987
Q ss_pred CC-----cccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccc
Q 038499 274 GP-----YVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI 348 (609)
Q Consensus 274 ~~-----~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (609)
.. ..+.+... .++|+++.|+||+++|+.+.|++.++++.....++. ..
T Consensus 194 ~~~~~~~~~~~~~~~---~~~div~~S~hK~l~g~~~~~~l~~~~~~~~~~~~~------------------------~~ 246 (294)
T cd00615 194 AHFRFHPILPSSAAM---AGADIVVQSTHKTLPALTQGSMIHVKGDLVNPDRVN------------------------EA 246 (294)
T ss_pred hhhccCcccCcchhh---cCCcEEEEchhcccchHhHHHHHHhCCCcCCHHHHH------------------------HH
Confidence 52 22222222 378999999999999887778888776531100000 00
Q ss_pred cccccCCChhHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 349 EERESGGTPQVIQMIR--AALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 349 ~~r~~~gtp~i~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
......++|++..+.. +++.++ ...|.+ ..++..++.+++++++.
T Consensus 247 ~~~~~ttsps~~~~asl~~a~~~~--~~~g~~-~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 247 LNLHQSTSPSYLILASLDVARAMM--ALEGKE-LVEELIELALYARQEIN 293 (294)
T ss_pred HHHHCCCCcHHHHHHHHHHHHHHH--HHHhHH-HHHHHHHHHHHHHHHHh
Confidence 2234456777655443 333333 334544 45667777888887764
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life. |
| >PRK08114 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-20 Score=194.63 Aligned_cols=236 Identities=11% Similarity=0.075 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH
Q 038499 117 QHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196 (609)
Q Consensus 117 ~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (609)
+..+.....+++.|+++-|+.. .++|. ||+. |++.++..+ +++|| +|+++...|.+...
T Consensus 58 R~~nPt~~~le~~la~LEg~~~--a~~~~-SGma-Ai~~~~~~l---------------l~~GD--~Vv~~~~~Yg~t~~ 116 (395)
T PRK08114 58 RRGTLTHFSLQEAMCELEGGAG--CALYP-CGAA-AVANAILAF---------------VEQGD--HVLMTGTAYEPTQD 116 (395)
T ss_pred CCCChhHHHHHHHHHHHhCCCe--EEEEh-HHHH-HHHHHHHHH---------------cCCCC--EEEEeCCCcHHHHH
Confidence 3334446678899999988752 45554 6655 677766554 47999 68888888877765
Q ss_pred HH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhC--CeEEEec
Q 038499 197 SW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYG--GFACFDF 270 (609)
Q Consensus 197 ~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g--~~vivD~ 270 (609)
.+ +..|+++.+++. .|.++++++|+ ++|++|++++++||+|.+.|+++|+++||++| ++++||.
T Consensus 117 l~~~~l~~~Gi~v~~vd~-----~d~~~l~~~l~-----~~TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDn 186 (395)
T PRK08114 117 FCSKILSKLGVTTTWFDP-----LIGADIAKLIQ-----PNTKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDN 186 (395)
T ss_pred HHHHHHHhcCcEEEEECC-----CCHHHHHHhcC-----CCceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEEC
Confidence 54 457999999874 37899999998 68999999999999999999999999999984 9999999
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCCCCCC--CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG--SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI 348 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~--g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (609)
+++.|+. +++.++ |+|+++.|.|||++|+. +.|+++.+++.. +.+..
T Consensus 187 T~a~p~~-~~pl~~---GaDivv~S~tKyl~Ghsdv~~G~v~~~~~~~--~~l~~------------------------- 235 (395)
T PRK08114 187 TWAAGVL-FKALDF---GIDISIQAGTKYLVGHSDAMIGTAVANARCW--EQLRE------------------------- 235 (395)
T ss_pred CCccccc-cCHHHc---CCcEEEEcCcccccCCCcceeEEEEcCHHHH--HHHHH-------------------------
Confidence 9999877 666665 89999999999999996 578777776552 11110
Q ss_pred cccccCCC-hhHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCc
Q 038499 349 EERESGGT-PQVIQMIRAALAFWV-KEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQ 412 (609)
Q Consensus 349 ~~r~~~gt-p~i~~~~~aal~~~~-~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~ 412 (609)
.+...|. .+... +|++ ....-.....++..+.+..+.+.|+++|.++ |+-|. + ....
T Consensus 236 -~~~~~G~~~~p~~------a~l~~rgl~TL~lR~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~g 308 (395)
T PRK08114 236 -NSYLMGQMVDADT------AYMTSRGLRTLGVRLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSS 308 (395)
T ss_pred -HHHhccCCCCHHH------HHHHHcCCCcHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCc
Confidence 0011121 11111 1111 1112234556777788899999999999875 55442 1 1245
Q ss_pred ceEEEEecc
Q 038499 413 AILSFNIHS 421 (609)
Q Consensus 413 ~~~~f~~~~ 421 (609)
++++|.+..
T Consensus 309 g~~sf~l~~ 317 (395)
T PRK08114 309 GLFSFVLKK 317 (395)
T ss_pred eEEEEEecC
Confidence 688888764
|
|
| >PLN02231 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=197.96 Aligned_cols=316 Identities=14% Similarity=0.047 Sum_probs=199.5
Q ss_pred HHHHHHHHHHHh----C--CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH
Q 038499 123 VHEASNYIKKCL----G--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196 (609)
Q Consensus 123 ~~e~r~~ia~~~----g--~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (609)
..++|+.|++++ | ++++ +|++| +|++++|..++.++. -.+|| .|+++.+.|+.+..
T Consensus 170 ~~~lReaIA~~~~~r~g~~~~pe-~I~iT-~Ga~~ai~~~~~~l~--------------~~~gd--~Vli~~P~Y~~y~~ 231 (534)
T PLN02231 170 IKGLRDAIAAGIEARDGFPADPN-DIFLT-DGASPAVHMMMQLLI--------------RSEKD--GILCPIPQYPLYSA 231 (534)
T ss_pred cHHHHHHHHHHHHhccCCCCCcc-cEEEe-CCHHHHHHHHHHHhc--------------cCCCC--EEEEeCCCChhHHH
Confidence 455556666554 4 3454 89998 899999999988762 03688 69999999999998
Q ss_pred HHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccC-CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEec
Q 038499 197 SWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDA-KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~-~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~ 270 (609)
.++..|++++.+++++ ++.+|+++|+++++..... .+++++++++|+||||.+.+ +++|+++|++||+++|+|+
T Consensus 232 ~~~~~g~~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vls~e~l~~Iv~~a~~~~l~lI~DE 311 (534)
T PLN02231 232 SIALHGGTLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPGNPTGQVLAEENQRDIVEFCKQEGLVLLADE 311 (534)
T ss_pred HHHHcCCEEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 8999999999999975 3589999999999742211 26899999999999999987 4578899999999999999
Q ss_pred cccCC-c----ccccCCCCC----C--CCc-cEEEEcCCCCC-CCC-CCcEEEEE---echhhccCCCCCCccCCCceEe
Q 038499 271 AASGP-Y----VEIDVRSGQ----T--DGY-DAIFLSTHKFL-GGP-GSPGILLM---TKALYQLGSFPPSTCGGGTVNY 333 (609)
Q Consensus 271 A~~~~-~----~~id~~~~~----~--~~~-D~v~~S~hK~l-ggp-~g~G~L~~---~~~~~~l~~~~p~~~ggg~v~~ 333 (609)
++.-- + ....+.... . ... -+++.|++|.+ |-| ..+|++++ ++++ ++.+...
T Consensus 312 vY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRiGy~~~~~~~~~l--~~~l~k~--------- 380 (534)
T PLN02231 312 VYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRGGYMEVTGFTSDV--REQIYKV--------- 380 (534)
T ss_pred cchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccceEEEEEecCCHHH--HHHHHHH---------
Confidence 96531 1 111111110 0 011 24556999965 423 34899987 4555 2222100
Q ss_pred ecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh----c-------CHHHHHHHHHHHHHHHHHHhCCCCceE
Q 038499 334 VNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY----I-------GHEVIKKQEETYIERALERLLPNQNIK 402 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~----~-------g~~~i~~~~~~l~~~~~~~L~~~p~i~ 402 (609)
.. ...+++...+. .+. ..+... . ..+.+.+..++.++.+.+.|++++++.
T Consensus 381 ---------------~~-~~~~s~~~~Q~-~~~--~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~gi~ 441 (534)
T PLN02231 381 ---------------AS-VNLCSNISGQI-LAS--LVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEGVT 441 (534)
T ss_pred ---------------Hh-hhcCCChHHHH-HHH--HHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCce
Confidence 00 11122222222 111 111100 0 123456677788889999999888888
Q ss_pred EeCCCCCCCcceEEEE-e-ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHH
Q 038499 403 ILGNTSTKRQAILSFN-I-HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSY 480 (609)
Q Consensus 403 v~~~~~~~r~~~~~f~-~-~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~ 480 (609)
+..+ ..+.+.|. + .+ ....+ . ..........+++..|+++.||.+.+|..|....
T Consensus 442 ~~~p----~Ggfylw~~l~lp-~~~~~----~-~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~------------- 498 (534)
T PLN02231 442 CNKA----EGAMYLFPRIHLP-QKAIK----A-AEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVP------------- 498 (534)
T ss_pred ecCC----CeeeEEeccccCc-HHHHH----H-HhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCC-------------
Confidence 8655 34566652 2 11 00000 0 0000001234566767777899999998775210
Q ss_pred HHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 481 QIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 481 ~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
...++|+++. .++++++..++.|..+.+.
T Consensus 499 -------------g~~~~Rit~~--~~~e~l~eal~RL~~~~~~ 527 (534)
T PLN02231 499 -------------GTWHFRCTIL--PQEDKIPAIVSRLTEFHKS 527 (534)
T ss_pred -------------CCCeEEEEeC--CCHHHHHHHHHHHHHHHHH
Confidence 1357999985 6889988888888876654
|
|
| >TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=188.41 Aligned_cols=280 Identities=15% Similarity=0.106 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEEC---CCCccchHH
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVG---PHEHHSNLL 196 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~---~~~h~s~~~ 196 (609)
..+..++++.+++++|.+++ +++++ +|+++++..++.++ +++|| .|++. .+.|.++..
T Consensus 53 ~~~~~~Le~~lA~~~g~~~e-~ilv~-~gg~~a~~~~~~al---------------~~~gd--~Vli~~~d~p~~~s~~~ 113 (346)
T TIGR03576 53 AIFEEKVQELGREHLGGPEE-KILVF-NRTSSAILATILAL---------------EPPGR--KVVHYLPEKPAHPSIPR 113 (346)
T ss_pred HHHHHHHHHHHHHHcCCCcc-eEEEE-CCHHHHHHHHHHHh---------------CCCCC--EEEECCCCCCCchhHHH
Confidence 47789999999999999876 77777 66666788777776 37888 56653 468888888
Q ss_pred HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccc---cCHHHHHHHHHHhCCeEEEecccc
Q 038499 197 SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY---SDTRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~---~dl~~I~~la~~~g~~vivD~A~~ 273 (609)
.++..|++++.. .++++++. . +++++++++. ++++|.+ .|+++|+++|++||+++++|+||+
T Consensus 114 ~~~l~ga~~~~~-------~~l~~l~~--~-----~~~~lIiitg-~s~~G~v~~~~~L~~i~~la~~~~~~livDEAy~ 178 (346)
T TIGR03576 114 SCKLAGAEYFES-------DELSELKK--I-----DGTSLVVITG-STMDLKVVSEEDLKRVIKQAKSKEAIVLVDDASG 178 (346)
T ss_pred HHHHcCCEEecc-------CCHHHHhh--C-----cCceEEEEEC-CCCCCcccCHHHHHHHHHHHHHcCCEEEEECCcc
Confidence 888899986432 24555432 1 4678877764 6899998 678999999999999999999998
Q ss_pred CCcccc-cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 274 GPYVEI-DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 274 ~~~~~i-d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
.+.... +.......+.|+++.|++|+++|+. .|++++++++ ++.+.... ..+
T Consensus 179 ~~~~~~~~~~~~~~~~~divv~s~SKalaG~r-~G~v~~~~~l--i~~l~~~~------------------------~~~ 231 (346)
T TIGR03576 179 ARVRRLYGQPPALDLGADLVVTSTDKLMDGPR-GGLLAGRKEL--VDKIKSVG------------------------EQF 231 (346)
T ss_pred ccccccCCCCCHHHcCCcEEEeccchhccccc-eEEEEeCHHH--HHHHHHhh------------------------cCc
Confidence 764321 1111111256899999999987777 5999999888 33332110 001
Q ss_pred cCC-ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCC
Q 038499 353 SGG-TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGEN 431 (609)
Q Consensus 353 ~~g-tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~ 431 (609)
... .+.....+.+++. ....+.+++..++..+++.+.+.. +.+..+ ..+ |.|.-.+ .
T Consensus 232 ~~s~~~~~~~aa~~aL~-----~~~~~~~~~~l~~r~~~~~~~l~~---~~~~~~----~~~-f~~~~~~-~-------- 289 (346)
T TIGR03576 232 GLEAQAPLLAAVVRALE-----EFELSRIRDAFKRKEEVYLRLFDK---LNVERT----PTG-FVIKGVE-E-------- 289 (346)
T ss_pred ccCccHHHHHHHHHHHh-----hccHHHHHHHHHHHHHHHHHHHHh---CCCCcC----CCe-EEEEeCC-C--------
Confidence 111 1222222222222 223455566666666666666653 333221 122 3333222 1
Q ss_pred CCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHH--
Q 038499 432 TKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNE-- 509 (609)
Q Consensus 432 ~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~e-- 509 (609)
.+..+++..+.++.||.+++|..+. + .++|+||+++ +++
T Consensus 290 --------~~~~~~~~~ll~~~gV~v~~~~~f~--------~--------------------~~~~vRis~~---~~~~~ 330 (346)
T TIGR03576 290 --------EKLIEIGLDLLRNYGIITITAVGMP--------G--------------------ASKTLRFDLA---AKDAE 330 (346)
T ss_pred --------CCHHHHHHHHHHhCCEEEeCCcccC--------C--------------------CCCeEEEEEe---cChHH
Confidence 1233444455566899999765431 0 1489999998 344
Q ss_pred --HHHHHHHHHHHH
Q 038499 510 --EFEFTLEALEFI 521 (609)
Q Consensus 510 --eid~ll~al~~v 521 (609)
|++.++++|++-
T Consensus 331 ~~~~~~~~~al~~~ 344 (346)
T TIGR03576 331 RIGDDYLVEAVKDS 344 (346)
T ss_pred hcCHHHHHHHHHhc
Confidence 799999999764
|
Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog. |
| >PLN02955 8-amino-7-oxononanoate synthase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-19 Score=192.08 Aligned_cols=334 Identities=15% Similarity=0.056 Sum_probs=220.1
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHH
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILR 169 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (609)
.+.+.++..+.+.++ +. ++..+..-.+.+...+++++.|++++|.+. .++|. +|..+++..+.......... .
T Consensus 118 ~p~v~~a~~~ai~~y-G~-g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~--all~s-SGy~AN~~~i~aL~~~~~~~--~ 190 (476)
T PLN02955 118 HPTISNAAANAAKEY-GM-GPKGSALICGYTTYHRLLESSLADLKKKED--CLVCP-TGFAANMAAMVAIGSVASLL--A 190 (476)
T ss_pred CHHHHHHHHHHHHHc-CC-CCCCcCccccChHHHHHHHHHHHHHHCCCc--EEEEC-ChHHHHHHHHHHHhhccccc--c
Confidence 345777777777654 42 332344445567788999999999999873 46665 99998776664432100000 0
Q ss_pred HHHHhhhcCCCceEEEECCCCccchHHHHHHc----CceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCc
Q 038499 170 EKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS----LAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245 (609)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~----G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~ 245 (609)
.. .....++...|++....|.|....++.. +++++.++.+ |+++|+++|++.. ++.++|++..+.++
T Consensus 191 ~~--~~~~~~~~d~i~~D~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~--~~~~~Vv~EgV~Sm 261 (476)
T PLN02955 191 AS--GKPLKNEKVAIFSDALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCK--MKRKVVVTDSLFSM 261 (476)
T ss_pred cc--ccccCCCCcEEEEeccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCC--CCceEEEEeCCCCC
Confidence 00 0000233337999999999999998876 5788888765 8999999997532 34578899999999
Q ss_pred cccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCC----C-CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCC
Q 038499 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRS----G-QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGS 320 (609)
Q Consensus 246 TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~----~-~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~ 320 (609)
.|.+.|+++|.++|++||+++++|+||+.+.....-.. . .....|+++.++.|.+|..+ |+++.++++ ++.
T Consensus 262 dGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~G~~G--Gfi~gs~~~--~~~ 337 (476)
T PLN02955 262 DGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAAGCHG--GFIACSKKW--KQL 337 (476)
T ss_pred CCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccchhccC--ceeecHHHH--HHH
Confidence 99999999999999999999999999987644321110 0 01367999999999998554 788888866 222
Q ss_pred CCCCccCCCceEeecccccccccccccccccccCC-ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Q 038499 321 FPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG-TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ 399 (609)
Q Consensus 321 ~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~g-tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p 399 (609)
+... +.. ..+..+ .|...+.+.+++..... + +..+++.+++.+++.+.+
T Consensus 338 l~~~--~~~--------------------~ifStalpp~~aaa~laal~l~~~---~-~~~r~~L~~n~~~fr~~~---- 387 (476)
T PLN02955 338 IQSR--GRS--------------------FIFSTAIPVPMAAAAYAAVVVARK---E-KWRRKAIWERVKEFKALS---- 387 (476)
T ss_pred HHHh--CCC--------------------CeecccccHHHHHHHHHHHHHHhc---C-HHHHHHHHHHHHHHHHhc----
Confidence 2110 000 001111 23344444455544321 2 235567777777777742
Q ss_pred ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHH
Q 038499 400 NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQS 479 (609)
Q Consensus 400 ~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~ 479 (609)
|+.+ ..||+.+.+.. . .....+.+.|.+ .||.+.+-...+.|.+
T Consensus 388 G~~~-------~sPI~pI~ig~-~----------------~~a~~~~~~L~~-~Gi~v~~i~yPtVP~g----------- 431 (476)
T PLN02955 388 GVDI-------SSPIISLVVGN-Q----------------EKALKASRYLLK-SGFHVMAIRPPTVPPN----------- 431 (476)
T ss_pred CCCC-------CCCEEEEEeCC-H----------------HHHHHHHHHHHH-CCCEEEEECCCCCCCC-----------
Confidence 3322 25888777765 2 235577888876 4999886554443321
Q ss_pred HHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 480 YQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 480 ~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
...+||+++..+|++||++++++|..+...
T Consensus 432 ---------------~~rLRi~lsA~Ht~edId~lv~~L~~~~~~ 461 (476)
T PLN02955 432 ---------------SCRLRVTLSAAHTTEDVKKLITALSSCLDF 461 (476)
T ss_pred ---------------CceEEEeeCCCCCHHHHHHHHHHHHHHHhh
Confidence 257999999999999999999999988654
|
|
| >TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type | Back alignment and domain information |
|---|
Probab=99.86 E-value=2e-19 Score=189.38 Aligned_cols=331 Identities=15% Similarity=0.096 Sum_probs=217.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCc-EEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhh-cCCCceEEEECCCCc
Q 038499 114 YVGQHTTNMVHEASNYIKKCLGGGQEDA-MIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCL-RDEERWVVFVGPHEH 191 (609)
Q Consensus 114 ~~~~~~~~~~~e~r~~ia~~~g~~~~~~-vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l-~~gd~~~Vlv~~~~h 191 (609)
+.+..+.+++.++++.++++++.+.+.. ++++|||| +++.+++..+ + ++|++ |++.. .
T Consensus 32 HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT-~a~Eaa~~nl---------------~~~~g~~--vLv~g--~ 91 (374)
T TIGR01365 32 HRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDT-GAVEMALWSM---------------LGCRGVD--VLAWE--S 91 (374)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchH-HHHHHHHHHc---------------CCCCCCe--EEEEC--H
Confidence 3456788999999999999999854434 45565554 4677776654 3 36764 44432 3
Q ss_pred cchH---HHHHHcCc-eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEE
Q 038499 192 HSNL---LSWRQSLA-EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFAC 267 (609)
Q Consensus 192 ~s~~---~~~~~~G~-~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vi 267 (609)
.+.. ..++..|+ ++..+..+....+|+++++. . . -+.++|+.+.||+..|+++|+..+ ++++++
T Consensus 92 FG~r~~~eia~~~g~~~v~~l~~~~g~~~~~~~ve~--~-----~---~v~~vhnETSTGv~npv~~i~~~~--~~~lli 159 (374)
T TIGR01365 92 FGKGWVTDVTKQLKLPDVRVLEAEYGKLPDLKKVDF--K-----N---DVVFTWNGTTSGVRVPNGDFIPAD--REGLTI 159 (374)
T ss_pred HHHHHHHHHHHhcCCCCcEEEcCCCCCCCCHHHcCC--C-----C---CEEEecCCCchheecccccccccc--CCCcEE
Confidence 3332 44566898 58888877777889998872 2 1 157999999999999998766433 589999
Q ss_pred EeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 268 FDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 268 vD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
||++.+++..+++|. ++|+++++.+|+||+|.|+++++++++. +.+.......+....+.+ +... ..|+.+
T Consensus 160 VDavSs~g~~~l~~d-----~iDv~~tgsQK~L~~ppGls~v~vs~~A--l~~~~~~~~y~~~~~~~~-~~~~-~~~~~~ 230 (374)
T TIGR01365 160 CDATSAAFAQDLDYH-----KLDVVTFSWQKVLGGEGAHGMLILSPRA--VARLESYTPAWPLPKIFR-LTKG-GKLNKK 230 (374)
T ss_pred EEccchhcCCCCChh-----HCcEEEEechhccCCCCceEEEEECHHH--HHHHhhcCCCCCChhhhc-cccc-cchhhh
Confidence 999999999999987 4799999999999999999999999998 333221100000000000 0000 011111
Q ss_pred ccccccCCChhHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceE-EEEeccCCCC
Q 038499 348 IEERESGGTPQVIQMIRAALAFW-VKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAIL-SFNIHSSTIN 425 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~-~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~-~f~~~~~~~~ 425 (609)
........||++..+..+...+. ++++.|++.+.+|.+++++.+++.++++..+.++......+++.+ ++.+.. +.-
T Consensus 231 ~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tvt~v~~~~-~~~ 309 (374)
T TIGR01365 231 IFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTSVCLKVVD-PAI 309 (374)
T ss_pred hhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCeEEEEeCC-ccc
Confidence 12234556788766654333332 223348999999999999999999999844777764223455544 444433 210
Q ss_pred CcCCCCCCCCC-CCCCC-hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC
Q 038499 426 SSLGENTKTET-DKPLH-GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP 503 (609)
Q Consensus 426 ~~~~~~~~~~~-~~~l~-~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~ 503 (609)
+. .. ....+ ...+.+.|.+ +||.+.+|.. . + ++..+||...
T Consensus 310 ~~-------~~~~~~~~~~~~~~~~l~~-~gi~i~~G~~------~-~----------------------~~~~fRIg~~ 352 (374)
T TIGR01365 310 DA-------LDEDAQADFAKELISTLEK-EGVAYDIGSY------R-D----------------------APSGLRIWCG 352 (374)
T ss_pred cc-------cccchhhHHHHHHHHHHHH-CCEEEecccc------c-c----------------------CCCceEEecC
Confidence 00 00 00011 4678888865 5999886532 1 1 2467999998
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 038499 504 YYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 504 ~~~t~eeid~ll~al~~v~~ 523 (609)
...+.+|++.++++|..+.+
T Consensus 353 G~i~~~di~~l~~~l~~~~~ 372 (374)
T TIGR01365 353 ATVEKSDLECLCPWLDWAFA 372 (374)
T ss_pred CcCCHHHHHHHHHHHHHHHh
Confidence 88999999999999998754
|
This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri. |
| >PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.7e-20 Score=195.03 Aligned_cols=303 Identities=16% Similarity=0.139 Sum_probs=191.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW- 198 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (609)
.....++++.++++.|++. .+++ +||+. ++..++.. +++|| .|++++..|++....+
T Consensus 49 ~p~~~~Le~~la~l~g~~~--al~~-~SG~~-Al~~~l~~----------------l~pGd--~Vi~~~~~y~~t~~~~~ 106 (380)
T PRK06176 49 NPTRFALEELIADLEGGVK--GFAF-ASGLA-GIHAVFSL----------------FQSGD--HVLLGDDVYGGTFRLFD 106 (380)
T ss_pred ChhHHHHHHHHHHHhCCCC--EEEE-CCHHH-HHHHHHHH----------------cCCCC--EEEEcCCChhHHHHHHH
Confidence 3446789999999999763 4555 58876 67665543 47898 6888888888776544
Q ss_pred ---HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 199 ---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 199 ---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
...|++++.++.. |+++++++++ +++++|++++++||||.+.|+++|+++||+||+++|+|++++.+
T Consensus 107 ~~~~~~gi~v~~vd~~-----d~e~l~~ai~-----~~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~ 176 (380)
T PRK06176 107 KVLVKNGLSCTIIDTS-----DLSQIKKAIK-----PNTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATP 176 (380)
T ss_pred HHHHhcCeEEEEcCCC-----CHHHHHHhcC-----cCceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCcccc
Confidence 3468888888753 8999999997 68999999999999999999999999999999999999998876
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
+....+ . .++|++++|+||+++||.. .|+++.+++.. ...+... +..
T Consensus 177 ~~~~p~-~---~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~-~~~~~~~--------------------------~~~ 225 (380)
T PRK06176 177 YYQNPL-L---LGADIVVHSGTKYLGGHSDVVAGLVTTNNEAL-AQEIAFF--------------------------QNA 225 (380)
T ss_pred ccCCcc-c---cCCCEEEecCceeccCCccceeeEEEecHHHH-HHHHHHH--------------------------HHH
Confidence 543333 2 2789999999999998863 57777754331 1111110 000
Q ss_pred CCC-hhHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcceEEE
Q 038499 354 GGT-PQVIQMIRAALAFWV-KEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAILSF 417 (609)
Q Consensus 354 ~gt-p~i~~~~~aal~~~~-~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~~f 417 (609)
.|. .+... ++++ ..........++..+.+.++.+.|++.|.+. ++.+.- ....++++|
T Consensus 226 ~G~~~~~~~------~~l~~~gl~tl~~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~ 299 (380)
T PRK06176 226 IGGVLGPQD------SWLLQRGIKTLGLRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSF 299 (380)
T ss_pred hcCCCCHHH------HHHHHhccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEE
Confidence 111 11000 0111 0111234444555666777888888888774 433321 113467788
Q ss_pred EeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCC
Q 038499 418 NIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVK 494 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~ 494 (609)
.+.. . -....+++.| +.+.+.+.-|...+ .|.......+.++... ..|+.
T Consensus 300 ~~~~-~----------------~~~~~f~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~---------~~gi~ 352 (380)
T PRK06176 300 TLKN-D----------------SEAVAFVESL-KLFILGESLGGVESLVGIPAFMTHACIPKEQRE---------AAGIR 352 (380)
T ss_pred EECC-H----------------HHHHHHHHcC-CcceEccCCCCCCceeeCCcccccccCCHHHHH---------hcCCC
Confidence 7754 1 1234455555 45566666554322 2322222223322211 24667
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 495 PGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 495 ~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
++.||||++.-+ ++.+++-|+..+
T Consensus 353 ~~liR~svGlE~----~~dli~dl~~Al 376 (380)
T PRK06176 353 DGLVRLSVGIEH----EQDLLEDLEQAF 376 (380)
T ss_pred cCeEEEEeccCC----HHHHHHHHHHHH
Confidence 899999999644 444554444444
|
|
| >TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-18 Score=191.84 Aligned_cols=430 Identities=16% Similarity=0.110 Sum_probs=258.5
Q ss_pred HHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHH
Q 038499 51 SEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYI 130 (609)
Q Consensus 51 ~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~i 130 (609)
.++.++.+.+.+... ..|+..+. -|+-|--+.+.++.+...+...+. |+.......+..++.+..++.+++
T Consensus 62 ~~~~l~~l~~~l~~~----sv~~~~P~-ry~ghm~~~~~~paila~~~a~~~----N~n~~~~e~SP~~t~lE~~vi~~l 132 (608)
T TIGR03811 62 MKDVLDELSSRLRTE----SVPWHSAG-RYWGHMNSETLMPAILAYNYAMLW----NGNNVAYESSPATSQMEEEVGKEF 132 (608)
T ss_pred HHHHHHHHHHHHhcC----CCCCCCcc-ceEEECcCCCCHHHHHHHHHHHHh----CCCCCccccCchHHHHHHHHHHHH
Confidence 556666666655321 12443321 388888888888887776655443 444444456677899999999999
Q ss_pred HHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc-chhhHHHH----------------------------------HHhh
Q 038499 131 KKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA-VPSILREK----------------------------------LIKC 175 (609)
Q Consensus 131 a~~~g~~~~~~vift~sGttaal~~l~~~l~~~-~~~~~~~~----------------------------------~~~~ 175 (609)
++++|.+.. ...||++||.+++..+..+..+. .|.++++. +.+.
T Consensus 133 a~l~G~~~~-~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~~~~~~~~~~ 211 (608)
T TIGR03811 133 ATLMGYKNG-WGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAGDQIDEIKAH 211 (608)
T ss_pred HHHhCCCCC-CeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccccchhhhhhh
Confidence 999999875 56788789999988887766532 11111100 0000
Q ss_pred h-cCC---Cc-eEEEECCCCccchHHHHHHcCc---eEEEEecCCCCCCCHHHHHHHHhhhccCCCc-eEEEEecccCcc
Q 038499 176 L-RDE---ER-WVVFVGPHEHHSNLLSWRQSLA---EVVEIGLDDDGLLDIEALRSKLELYKDAKRP-ILGSFSACSNVT 246 (609)
Q Consensus 176 l-~~g---d~-~~Vlv~~~~h~s~~~~~~~~G~---~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~-~lv~~s~~sn~T 246 (609)
. .+| .+ .+++++...|+|...++...|+ .++.||+|+++++|+++|+++|.+....+.+ .+|+.+.+++.+
T Consensus 212 ~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~~~~~~g~p~~~VVataGTT~~ 291 (608)
T TIGR03811 212 SARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIRKLAAEKTPILGVVGVVGSTEE 291 (608)
T ss_pred ccccccccccceEEEECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHHHHHhcCCCeEEEEEEcCCcCC
Confidence 0 010 01 1588899889999999999988 6999999999999999999999764433434 467888999999
Q ss_pred ccccCHHHHHHHH---HHhCC--eEEEeccccCCccc--cc--------------------C-------CC-----C-CC
Q 038499 247 GIYSDTRSIARLL---HQYGG--FACFDFAASGPYVE--ID--------------------V-------RS-----G-QT 286 (609)
Q Consensus 247 G~~~dl~~I~~la---~~~g~--~vivD~A~~~~~~~--id--------------------~-------~~-----~-~~ 286 (609)
|.+.|+++|+++| +++|+ |+|||+|+++.... .+ + .+ + ..
T Consensus 292 GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~~~f~~~~~~l~~~~~~~l~gl 371 (608)
T TIGR03811 292 GAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEYGVFTEKKEYISREVYNAYKAI 371 (608)
T ss_pred cccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccccccccccccccHhHHHHHhcC
Confidence 9999999999998 67887 69999998763210 00 0 00 0 12
Q ss_pred CCccEEEEcCCCCCCCCCCcEEEEEechhhc--cCCCCCCccCCCceEeecccccccccccccccccccCCChhH-HHHH
Q 038499 287 DGYDAIFLSTHKFLGGPGSPGILLMTKALYQ--LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV-IQMI 363 (609)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i-~~~~ 363 (609)
..+|.+++++|||+..|.++|++++++.... +....++....+. .....+ .....+...+.. ...+
T Consensus 372 e~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~---------~~p~~~--g~~~legSR~ga~Alkl 440 (608)
T TIGR03811 372 SEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISYFATYVFEKGA---------DIPALL--GAYILEGSKAGATAASV 440 (608)
T ss_pred cCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhcCcchhccccc---------cCcccc--cccceecCCccHHHHHH
Confidence 5789999999999999999999999976421 1111111110000 000000 000111111221 1111
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC------CCceEE--eCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 364 RAALAFWVKEYIGHEVIKKQEETYIERALERLLP------NQNIKI--LGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~------~p~i~v--~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
.+++...-....|+..+..+..++++++.+.|.. -+.+++ +.+ +.+++++|...+ ..+.
T Consensus 441 W~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~~---pdlniV~Fr~~~-~g~~--------- 507 (608)
T TIGR03811 441 WAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLTK---PDFNMVDYVFNE-KGND--------- 507 (608)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecCC---CCcceEEEEEec-CCCc---------
Confidence 2222221013347888999999999999999987 355665 433 468999999876 2210
Q ss_pred CCCCCChHHHHHHHhhhcCcEe----------ccCcccCChhhhhhcCCChhHHHHHHHHH-hhCC---CCCCCcEEEEe
Q 038499 436 TDKPLHGPFVATLLNDLFGIQA----------RGGCACAGPYGHHLLDLDEAQSYQIRSAI-QKGY---VGVKPGWTRIS 501 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v----------~~G~~ca~p~~~~ll~i~~~~~~~~~~~~-~~~~---~~~~~g~iRls 501 (609)
..-..+.+.+.+.+++.+.- ..-..+...|+.... .+.+-+ .... .+.+-..+|-+
T Consensus 508 --~l~~~n~ln~~i~~~~~~~~g~~~~~~~~~s~t~~~~~~yg~~~~--------~~~~~~~~~~~~~~~~~~~~~lr~~ 577 (608)
T TIGR03811 508 --DLVKMNKLNHAFYDYASYVKGSIYNNEFITSHTDFAIPDYGDSPF--------AFVNSLGFSDEEWQRAGKVTILRAS 577 (608)
T ss_pred --cHHHHHHHHHHHHHhhccccCCCCCcceEeeecccccchhhhhHH--------HHHHHcCCChhhhccCCceEEEEEE
Confidence 00124566666666544322 111111112332211 010000 0000 11123578988
Q ss_pred c--CCCCCHHHHHHHHHHHHHHHHh
Q 038499 502 F--PYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 502 ~--~~~~t~eeid~ll~al~~v~~~ 524 (609)
+ +|.++.+-++.+++.|+.++.+
T Consensus 578 ~m~p~~~~~~~~~~~~~~~~~~~~~ 602 (608)
T TIGR03811 578 VMTPYMNDKENFDEYAPKIKAAMQE 602 (608)
T ss_pred ecCcccCChhhHHHHHHHHHHHHHH
Confidence 7 4555557788888888877654
|
This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis. |
| >PRK14808 histidinol-phosphate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=189.74 Aligned_cols=310 Identities=15% Similarity=0.060 Sum_probs=203.5
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG---GGQEDAMIFCGSGTTA 151 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g---~~~~~~vift~sGtta 151 (609)
+..+.|+.+... +.|+.+.+++.+.+.. ...+. | ... ...++|+.++++++ .+++ +|++| +|+++
T Consensus 19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~~--~~~~~--Y-~~~----~~~~Lr~aia~~~~~~~~~~~-~i~it-~Ga~~ 87 (335)
T PRK14808 19 RDRTYLALNENPFPFPEDLVDEVFRRLNS--DTLRI--Y-YDS----PDEELIEKILSYLDTDFLSKN-NVSVG-NGADE 87 (335)
T ss_pred CceeEecCCCCCCCCCHHHHHHHHHHhhh--hhhhc--C-CCC----ChHHHHHHHHHHhCCCCCCcc-eEEEc-CCHHH
Confidence 366777766544 4566788888776542 11110 1 111 14578889999998 6666 89888 89999
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~ 231 (609)
+|..++..+ | .|++.++.|+.+...++..|++++.+++++++.++... +.
T Consensus 88 ~i~~~~~~~-------------------d--~v~v~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~----~~----- 137 (335)
T PRK14808 88 IIYVMMLMF-------------------D--RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVN----VG----- 137 (335)
T ss_pred HHHHHHHHh-------------------C--cEEECCCCHHHHHHHHHHcCCeEEEecCCCcCCCChhH----cc-----
Confidence 999887754 2 48888999999999999999999999998777655332 22
Q ss_pred CCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCC-CCCCCccEEEEcCCCCCCCC-CCcEEE
Q 038499 232 KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRS-GQTDGYDAIFLSTHKFLGGP-GSPGIL 309 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~-~~~~~~D~v~~S~hK~lggp-~g~G~L 309 (609)
+++++++++++||||.+.+.+++.+++ ++++++|+|+++..-. .-.+.+ ......-+++.|++|.+|-| ..+|++
T Consensus 138 -~~~~i~i~nP~NPTG~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~-~~~~~~~~~~~~~vi~~~S~SK~~~l~GlRvG~~ 214 (335)
T PRK14808 138 -EGDVVFIPNPNNPTGHVFEREEIERIL-KTGAFVALDEAYYEFH-GESYVDLLKKYENLAVIRTFSKAFSLAAQRIGYV 214 (335)
T ss_pred -CCCEEEEeCCCCCCCCCcCHHHHHHHH-hcCCEEEEECchhhhc-CCchHHHHHhCCCEEEEEechhhccCcccceEEE
Confidence 468999999999999999999999998 5899999999965321 101111 00012247778999999844 459999
Q ss_pred EEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIE 389 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (609)
++++++ ++.+.... ...+.+.+.+.+ + ...+.+....+...++.++.++
T Consensus 215 v~~~~~--~~~l~~~~--------------------------~~~~~~~~~q~a-~--~~~l~~~~~~~~~~~~~~~~r~ 263 (335)
T PRK14808 215 VSSEKF--IDAYNRVR--------------------------LPFNVSYVSQMF-A--KVALDHREIFEERTKFIVEERE 263 (335)
T ss_pred EeCHHH--HHHHHHhc--------------------------CCCCCCHHHHHH-H--HHHHhCHHHHHHHHHHHHHHHH
Confidence 999887 33331110 001222222221 1 1111111122333445555577
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
++.+.|+++ ++.+..+ ..+++++.+.. .+..++.+.|.+ .||.++. |
T Consensus 264 ~l~~~L~~~-g~~~~~~----~g~f~~~~l~~------------------~~~~~~~~~l~~-~Gi~V~~---~------ 310 (335)
T PRK14808 264 RMKSALREM-GYRITDS----RGNFVFIFMEK------------------EEKERLLEHLRA-KNIAVRS---F------ 310 (335)
T ss_pred HHHHHHHHC-CCEECCC----CCeEEEEeCCC------------------ccHHHHHHHHHH-CCeEEEE---C------
Confidence 788888876 6776544 34455444332 245678888865 6999982 1
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+.++||+++ +.++.++++++|+.+
T Consensus 311 -------------------------~~~~Risi~---~~~~~~~~~~~l~~~ 334 (335)
T PRK14808 311 -------------------------REGVRITIG---KREENDMILKELEVF 334 (335)
T ss_pred -------------------------CCCeEEecC---CHHHHHHHHHHHHhh
Confidence 257999998 889999999999753
|
|
| >PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-19 Score=192.12 Aligned_cols=331 Identities=17% Similarity=0.155 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH----
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS---- 197 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~---- 197 (609)
...++++.++++.|.+. .+ ++++|+. |+..++.++ +++|| .|+++...|++....
T Consensus 64 ~~~~le~~lA~l~g~~~--al-~~~SG~~-Ai~~al~al---------------l~pGd--~VIv~~~~y~~t~~~~~~~ 122 (427)
T PRK05994 64 TNAVLEERVAALEGGTA--AL-AVASGHA-AQFLVFHTL---------------LQPGD--EFIAARKLYGGSINQFGHA 122 (427)
T ss_pred cHHHHHHHHHHHhCCCc--EE-EEcCHHH-HHHHHHHHH---------------hCCCC--EEEEecCcchhHHHHHHHH
Confidence 35678999999999863 34 4457776 455555554 47898 699999999876654
Q ss_pred HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc
Q 038499 198 WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277 (609)
Q Consensus 198 ~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~ 277 (609)
+...|++++.++.+ |+++++++++ +++++|++++++||||.+.|+++|.++||+||+++++|++++.|+.
T Consensus 123 ~~~~G~~v~~vd~~-----d~~~l~~ai~-----~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~ 192 (427)
T PRK05994 123 FKSFGWQVRWADAD-----DPASFERAIT-----PRTKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL 192 (427)
T ss_pred HHhcCcEEEEECCC-----CHHHHHHhcC-----cCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc
Confidence 35579999998754 8999999997 6899999999999999999999999999999999999999987754
Q ss_pred cccCCCCCCCCccEEEEcCCCCCCCCCC-cEEEEEechhhccCCCCC---Ccc---C-CCceEeeccccccccccccccc
Q 038499 278 EIDVRSGQTDGYDAIFLSTHKFLGGPGS-PGILLMTKALYQLGSFPP---STC---G-GGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~L~~~~~~~~l~~~~p---~~~---g-gg~v~~~~~~~~~~~~~~~~~~ 349 (609)
...+ . .++|+++.|+||++||+++ +|.+++....+.....+. ... + |+.+...+ +............
T Consensus 193 ~~pl-~---~gaDivv~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 267 (427)
T PRK05994 193 IRPI-E---HGADIVVHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHET-FGNFAFAIAARVL 267 (427)
T ss_pred CCcc-c---cCCcEEEEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHH-hhhhhhHHHHHHH
Confidence 3332 2 3899999999999998875 565565422100000000 000 0 01100000 0000000000000
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC--------------CCCcce
Q 038499 350 ERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS--------------TKRQAI 414 (609)
Q Consensus 350 ~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~--------------~~r~~~ 414 (609)
.....|.. +.-..+.+. +.+..-.+.+.++..+++.++.+.|+++|++. |+-|.- ....++
T Consensus 268 ~~~~~G~~--~~~~~A~l~--~~~l~tL~~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g~g~~ 343 (427)
T PRK05994 268 GLRDLGPA--ISPFNAFLI--LTGIETLPLRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKGAGAV 343 (427)
T ss_pred HHHhcCCC--CCHHHHHHH--HcCcccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCCceEE
Confidence 00111211 111122211 11223456667778888999999999999875 444421 113557
Q ss_pred EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCC
Q 038499 415 LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYV 491 (609)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~ 491 (609)
++|.+.+ +. -....+++.| +.+.+.+.-|...+ .|.......+.++... ..
T Consensus 344 ~sf~l~~-~~---------------~~~~~~~~~l-~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~---------~~ 397 (427)
T PRK05994 344 FTFGLKG-GY---------------EAGVKLVSSL-KLFSHLANIGDTRSLVIHPASTTHRQLTDEQKV---------AA 397 (427)
T ss_pred EEEEecC-CH---------------HHHHHHHHhC-CcceeccccCCCcceeeCCCCCCcccCCHHHHH---------hc
Confidence 8888764 21 1234555666 45666666664332 1221111122222211 24
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 492 GVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 492 ~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
|+.++.||||++.- +.+.+++.|+..+
T Consensus 398 gi~~~liRlsvGlE----~~~dli~dl~~Al 424 (427)
T PRK05994 398 GAGPDVVRLSIGIE----DVDDIIADLEQAL 424 (427)
T ss_pred CCCCCcEEEEeccC----CHHHHHHHHHHHH
Confidence 56678999999964 4445555555444
|
|
| >PRK07505 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-19 Score=190.90 Aligned_cols=350 Identities=15% Similarity=0.084 Sum_probs=205.7
Q ss_pred CCCccccCCCCCCceEEecCCCCCCC----hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTASGRS----LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE 139 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~g~~----~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~ 139 (609)
+.+.++.+..|+ .|+|..+.+.. ++.|.+++.+++.. +++.+...+ .+....+...++++.+++++|. +
T Consensus 35 ~~G~~~~d~~g~---~~ld~~s~~~lgl~~~p~v~~A~~~~l~~-~g~~~~~~~-~~~~~~~~~~~l~~~la~~~~~--~ 107 (402)
T PRK07505 35 REGILITLADGH---TFVNFVSCSYLGLDTHPAIIEGAVDALKR-TGSLHLSSS-RTRVRSQILKDLEEALSELFGA--S 107 (402)
T ss_pred cCCccEEecCCc---eEEEeecCCccCCCCCHHHHHHHHHHHHH-hCCCCCCcc-chhhhhHHHHHHHHHHHHHhCC--C
Confidence 445556666664 38887655433 78899999988864 343222211 1223466789999999999987 3
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCCCCCCC
Q 038499 140 DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDDDGLLD 217 (609)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~g~ld 217 (609)
.++++ +|++++...+ .+.... .+.+++..+|+.....|+++. ..+...+.+++.++.+ |
T Consensus 108 -~~~~~-sG~~a~~~ai-~~~~~~-----------~~~~~~~~vi~~~~~~H~s~~~~~~~~~~~~~v~~~~~~-----d 168 (402)
T PRK07505 108 -VLTFT-SCSAAHLGIL-PLLASG-----------HLTGGVPPHMVFDKNAHASLNILKGICADETEVETIDHN-----D 168 (402)
T ss_pred -EEEEC-ChHHHHHHHH-HHHHhc-----------ccCCCCCCEEEEchhhhHhHHhhhhhhhcCCeEEEeCCC-----C
Confidence 56666 7887643333 221100 012233335666677787753 2344456788888763 8
Q ss_pred HHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC-cc----cccCCCCC--CCCcc
Q 038499 218 IEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP-YV----EIDVRSGQ--TDGYD 290 (609)
Q Consensus 218 ~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~-~~----~id~~~~~--~~~~D 290 (609)
+++|+++++ ++++++++++++|+||.+.|+++|.++|++||+++|+|++++.+ +. ........ .....
T Consensus 169 ~~~l~~~~~-----~~~~~~vl~~p~~~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~ 243 (402)
T PRK07505 169 LDALEDICK-----TNKTVAYVADGVYSMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERT 243 (402)
T ss_pred HHHHHHHHh-----cCCCEEEEEecccccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCe
Confidence 999999887 46788899999999999999999999999999999999998532 11 11101111 11335
Q ss_pred EEEEcCCCCCCCCCCcEEEEE-echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHH
Q 038499 291 AIFLSTHKFLGGPGSPGILLM-TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAAL 367 (609)
Q Consensus 291 ~v~~S~hK~lggp~g~G~L~~-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal 367 (609)
+++.|+.|.+|+++ |++++ ++++ ++.+.....+ . ...++++..+.. .+++
T Consensus 244 i~~~s~sK~~~~~G--g~~~~~~~~~--~~~~~~~~~~----------------------~-t~~~~~~~~a~aa~~a~l 296 (402)
T PRK07505 244 IIAASLGKAFGASG--GVIMLGDAEQ--IELILRYAGP----------------------L-AFSQSLNVAALGAILASA 296 (402)
T ss_pred EEEEechhhhhccC--eEEEeCCHHH--HHHHHHhCCC----------------------c-eeCCCCCHHHHHHHHHHH
Confidence 67779999998653 77765 4455 2222111000 0 012333333322 2333
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHH
Q 038499 368 AFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVAT 447 (609)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 447 (609)
+.. .........++.++....+.+.+.. +......++..+.+.. . .....+.+
T Consensus 297 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~~--------~~~g~~~~i~~~~~~~-~----------------~~~~~~~~ 349 (402)
T PRK07505 297 EIH--LSEELDQLQQKLQNNIALFDSLIPT--------EQSGSFLPIRLIYIGD-E----------------DTAIKAAK 349 (402)
T ss_pred HHH--hccCcHHHHHHHHHHHHHHHHHHHh--------cCCCCCCCEEEEEeCC-H----------------HHHHHHHH
Confidence 322 2223333333333333332222111 1011233333333222 1 13567888
Q ss_pred HHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 448 LLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 448 ~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.|.+ .||.+++......+. .+.++||+++..+|++|+++++++|+.++.++
T Consensus 350 ~l~~-~Gi~v~~~~~p~~~~--------------------------~~~~lRi~~~~~~t~eei~~~~~~l~~~l~~~ 400 (402)
T PRK07505 350 QLLD-RGFYTSPVFFPVVAK--------------------------GRAGLRIMFRASHTNDEIKRLCSLLKEILDEG 400 (402)
T ss_pred HHHH-CCCeEeeecCCCCCC--------------------------CCceEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 8876 599998542111000 13689999999999999999999999998765
|
|
| >PRK09028 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=191.64 Aligned_cols=301 Identities=13% Similarity=0.067 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH----H
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS----W 198 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~----~ 198 (609)
..++++.|+++.|+. .++++ +|+++|+..++..+ +++|| +|+++...|++.... .
T Consensus 63 ~~~Le~~iA~le~~~---~~~~~-~sG~~Ai~~~l~al---------------l~~GD--~Vvv~~~~Y~~t~~l~~~~l 121 (394)
T PRK09028 63 HFAFQAAIVELEGGA---GTALY-PSGAAAISNALLSF---------------LKAGD--HLLMVDSCYEPTRDLCDKIL 121 (394)
T ss_pred HHHHHHHHHHHhCCC---cEEEE-CCHHHHHHHHHHHH---------------hCCCC--EEEEECCCcHHHHHHHHHhh
Confidence 557889999998764 45666 44555777776655 48999 688888888766542 2
Q ss_pred HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc
Q 038499 199 RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE 278 (609)
Q Consensus 199 ~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~ 278 (609)
...|+++..++.+ +.++++++++ ++|++|++++++||||.+.|+++|+++||+||+++++|++++.|...
T Consensus 122 ~~~Gi~v~~v~~~-----~~e~l~~~l~-----~~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~~ 191 (394)
T PRK09028 122 KGFGIETTYYDPM-----IGEGIRELIR-----PNTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPINS 191 (394)
T ss_pred hhcceEEEEECCC-----CHHHHHHhcC-----cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCccccccC
Confidence 3468888877643 5678888887 68999999999999999999999999999999999999999887432
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
..+ . .|+|+++.|.|||++|+.. .|+++.+++. .+.+... ....+.+
T Consensus 192 ~Pl-~---~GaDivv~S~tK~l~Gh~d~~~G~~~~~~~~--~~~l~~~-------------------------~~~~G~~ 240 (394)
T PRK09028 192 RPF-E---MGVDISIQAATKYIVGHSDVMLGTATANEKH--WDQLREH-------------------------SYLMGQC 240 (394)
T ss_pred Ccc-c---cCceEEEEeCCeEecCCCCEEEEEEECCHHH--HHHHHHH-------------------------HHhcCCC
Confidence 111 2 2899999999999999864 4666555554 1222100 0001111
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCcceEEEEeccC
Q 038499 357 PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQAILSFNIHSS 422 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~~~~~f~~~~~ 422 (609)
.+... +-+ .+..........++..+.+..+.+.|+++|.++ |+-|. + ....++++|.+..
T Consensus 241 ~~p~~---a~l--~~rgl~TL~lR~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~- 314 (394)
T PRK09028 241 TSPDD---VYL--AMRGLRTLGVRLAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQ- 314 (394)
T ss_pred CCHHH---HHH--HHcccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECC-
Confidence 11111 111 111112345556777788889999999998874 54442 1 1235688888863
Q ss_pred CCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
+. .-....+.+.| +.+.+.+.-|...+ .|+... .+... + ..++.++.||
T Consensus 315 ~~--------------~~~~~~f~~~l-~l~~~~~slG~~~sLv~~p~~~~--~~~~~----------~-~~~~~~~liR 366 (394)
T PRK09028 315 GD--------------PKAVTALVEGM-QHFKMGFSWGGFESLILGVFGIN--KLRTA----------T-NWDFSKPLIR 366 (394)
T ss_pred CC--------------HHHHHHHHHhC-CcceEecccCCCcceeECCCCcC--ccCch----------h-hhcCCCCeEE
Confidence 11 01233455555 45566665554322 121111 11100 0 0233458999
Q ss_pred EecCCCCCHHHHHHHHHHHH
Q 038499 500 ISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~ 519 (609)
||++.-..++=++.+.++|+
T Consensus 367 ~svGlEd~~dLi~Dl~~Al~ 386 (394)
T PRK09028 367 LHIGLEDVDDLIADLEAGFE 386 (394)
T ss_pred EEeCcCCHHHHHHHHHHHHH
Confidence 99997544443444444443
|
|
| >PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-19 Score=190.52 Aligned_cols=285 Identities=15% Similarity=0.099 Sum_probs=184.5
Q ss_pred HHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH
Q 038499 120 TNMVHEASNYIKKCLG---GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g---~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (609)
..+++.+.+++.+..| .+++ +|++| +|+++++..+..++. +++|| .|+++.+.|+.+..
T Consensus 65 ~~lr~~ia~~l~~~~~~~~~~~~-~I~it-~G~~~~i~~~~~~l~--------------~~~gd--~Vl~~~p~y~~~~~ 126 (364)
T PRK07865 65 PELREAIVGWLARRRGVTGLDPA-AVLPV-IGSKELVAWLPTLLG--------------LGPGD--VVVIPELAYPTYEV 126 (364)
T ss_pred HHHHHHHHHHHHHHcCCCCCCcc-cEEEc-cChHHHHHHHHHHHc--------------CCCCC--EEEECCCCcccHHH
Confidence 3444455555555445 4465 89888 899999988877653 36888 69999999999988
Q ss_pred HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEecccc
Q 038499 197 SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~ 273 (609)
.++..|++++.++ +++++. . .+++++++++++||||.+.+. ++|.++|++||+++++|++++
T Consensus 127 ~~~~~g~~~~~~~-------~~~~l~----~----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~ 191 (364)
T PRK07865 127 GARLAGATVVRAD-------SLTELG----P----QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYL 191 (364)
T ss_pred HHHhcCCEEEecC-------ChhhCC----c----ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh
Confidence 8888999998875 233322 1 468999999999999999874 578888999999999999976
Q ss_pred CCcc-cccCCCCC------CCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc
Q 038499 274 GPYV-EIDVRSGQ------TDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 274 ~~~~-~id~~~~~------~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
.... ...+..+. .....+++.|++|.+|.|+ .+|+++.++++ ++.+...
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlRiG~i~~~~~~--~~~~~~~--------------------- 248 (364)
T PRK07865 192 ELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGYRAGFVAGDPAL--VAELLEV--------------------- 248 (364)
T ss_pred hhccCCCCCccccccccCCccceEEEEeechhccCCCceeeEEEecCHHH--HHHHHHH---------------------
Confidence 3211 10011010 0123488889999997553 48999998887 2222110
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCC
Q 038499 346 EDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTIN 425 (609)
Q Consensus 346 ~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~ 425 (609)
.......++.+.+.+ +.. ++.+....+..++..++.++.+.+.|++. ++.+..+ ..+++.+...+
T Consensus 249 ---~~~~~~~~~~~~q~~--~~~-~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~---- 313 (364)
T PRK07865 249 ---RKHAGMMVPAPVQAA--MVA-ALGDDAHVREQRERYARRRAVLRPALEAA-GFRVDHS----EAGLYLWATRG---- 313 (364)
T ss_pred ---HHhcCCCcCHHHHHH--HHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHc-CCcccCC----CccEEEEEeCC----
Confidence 000111223333321 112 22222234555666677788888888875 6665544 23444444333
Q ss_pred CcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC
Q 038499 426 SSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY 505 (609)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~ 505 (609)
.+...+.+.|.+ .||.+++|..+. +. .++++||+++.
T Consensus 314 --------------~~~~~~~~~l~~-~gv~v~pg~~f~-~~--------------------------~~~~iRi~~~~- 350 (364)
T PRK07865 314 --------------EDCWDTVAWLAE-RGILVAPGDFYG-PA--------------------------GAQHVRVALTA- 350 (364)
T ss_pred --------------CCHHHHHHHHHH-CCEEEeCccccC-cC--------------------------CCCEEEEEecC-
Confidence 235677787855 699999876443 10 15899999974
Q ss_pred CCHHHHHHHHHHHH
Q 038499 506 MSNEEFEFTLEALE 519 (609)
Q Consensus 506 ~t~eeid~ll~al~ 519 (609)
++++++..++.|+
T Consensus 351 -~~~~~~~~~~~l~ 363 (364)
T PRK07865 351 -TDERIAAAVERLA 363 (364)
T ss_pred -CHHHHHHHHHHhh
Confidence 6899999988874
|
|
| >PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.3e-19 Score=188.56 Aligned_cols=331 Identities=14% Similarity=0.132 Sum_probs=207.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
...+++++.+++++|.+ +++++ +|+++++..++.+++ +++|| .|++++++|+++..+++.
T Consensus 31 ~~~~~~e~~la~~~g~~---~~v~~-~sgt~al~~~l~~~~--------------~~~Gd--~Viv~~~t~~~~~~~~~~ 90 (375)
T PRK11706 31 GFTRRCQQWLEQRFGSA---KVLLT-PSCTAALEMAALLLD--------------IQPGD--EVIMPSYTFVSTANAFVL 90 (375)
T ss_pred HHHHHHHHHHHHHhCCC---eEEEE-CCHHHHHHHHHHHhC--------------CCCCC--EEEECCCCcHHHHHHHHH
Confidence 34677888899999884 68888 556667877766554 47888 799999999999999999
Q ss_pred cCceEEEEecCCC-CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccc
Q 038499 201 SLAEVVEIGLDDD-GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 201 ~G~~vv~v~~~~~-g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~i 279 (609)
.|++++.++++++ +.+|+++++++++ +++++++++ |++|...|+++|.++|++||+++|+|+||+.+.. .
T Consensus 91 ~G~~~v~~d~d~~~~~~d~~~le~~i~-----~~tk~i~~~---~~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~-~ 161 (375)
T PRK11706 91 RGAKIVFVDIRPDTMNIDETLIEAAIT-----PKTRAIVPV---HYAGVACEMDTIMALAKKHNLFVVEDAAQGVMST-Y 161 (375)
T ss_pred cCCEEEEEecCCCcCCcCHHHHHHhcC-----CCCeEEEEe---CCCCCccCHHHHHHHHHHcCCEEEEECccccccc-c
Confidence 9999999999875 4789999999998 578988765 4699999999999999999999999999987753 2
Q ss_pred cCCCCCCCCccEEEEcCC--CCCCCCCCcEEEEEec-hhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 280 DVRSGQTDGYDAIFLSTH--KFLGGPGSPGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~h--K~lggp~g~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
+-.+... ..|+-++|+| |.++.+.| |++++++ ++ .+++......|..... +.......+ .....|+
T Consensus 162 ~~~~~g~-~~~~~~~Sf~~~K~l~~g~g-G~~~~~~~~~--~~~~~~~~~~g~~~~~---~~~~~~~~~----~~~~~g~ 230 (375)
T PRK11706 162 KGRALGT-IGHIGCFSFHETKNYTAGEG-GALLINDPAL--IERAEIIREKGTNRSQ---FFRGQVDKY----TWVDIGS 230 (375)
T ss_pred CCeeeec-CcCEEEEeCCCCccccccCC-eEEEECCHHH--HHHHHHHHHcCCCcch---hhccCCCcc----eeeeccc
Confidence 2222211 2478888888 99975444 6566654 44 2222222211110000 000000000 0011233
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc---eEEeC-CCCCCC-cceEEEEeccCCCCCcCCCC
Q 038499 357 PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN---IKILG-NTSTKR-QAILSFNIHSSTINSSLGEN 431 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~---i~v~~-~~~~~r-~~~~~f~~~~~~~~~~~~~~ 431 (609)
...+.-+.+++... +....+.+.++.+++.+++.+.|..+++ +.+.. +.+... ...+.+.+.. .
T Consensus 231 ~~~~~~~~aa~~~~--ql~~l~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------- 299 (375)
T PRK11706 231 SYLPSELQAAYLWA--QLEAADRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRD-L-------- 299 (375)
T ss_pred ccCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECC-c--------
Confidence 22222222332221 2223677778888889999999988762 44321 111111 1122222322 1
Q ss_pred CCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC--hhhhhh--cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC
Q 038499 432 TKTETDKPLHGPFVATLLNDLFGIQARGGCACAG--PYGHHL--LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS 507 (609)
Q Consensus 432 ~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~--p~~~~l--l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t 507 (609)
.+.+.+.+.|.+ .||.++.+...-. |..... ..-+.+.++.+ ....+-+.++..++
T Consensus 300 --------~~r~~l~~~L~~-~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~-----------~~~~l~lP~~~~l~ 359 (375)
T PRK11706 300 --------EDRSALINFLKE-AGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKE-----------SERLLRLPLFYNLT 359 (375)
T ss_pred --------CCHHHHHHHHHH-CCCCccccCCccCcchhhHhcCCCCCCChHHHHH-----------HhCcEeccCCCCCC
Confidence 357889999976 5999875431110 110100 00112333333 24678999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 038499 508 NEEFEFTLEALEFIA 522 (609)
Q Consensus 508 ~eeid~ll~al~~v~ 522 (609)
++|+++++++|+++.
T Consensus 360 ~~~~~~i~~~i~~~~ 374 (375)
T PRK11706 360 DVEQRTVIDTILEFF 374 (375)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999764
|
|
| >PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=194.24 Aligned_cols=326 Identities=17% Similarity=0.115 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
....++++.++++.|... .+ ++++|+ +++..++..+ +++|| .|+++...|++....+..
T Consensus 58 pt~~~Le~~lA~l~g~~~--~l-~~ssG~-~Ai~~al~al---------------~~~Gd--~Vl~~~~~Y~~t~~~~~~ 116 (425)
T PRK06084 58 PTNDVLEQRVAALEGGVG--AL-AVASGM-AAITYAIQTI---------------AEAGD--NIVSVAKLYGGTYNLLAH 116 (425)
T ss_pred chHHHHHHHHHHHhCCCc--ee-EehhHH-HHHHHHHHHH---------------hCCCC--EEEEeCCCcchHHHHHHH
Confidence 345689999999999652 45 444777 5788777765 37888 588888888866655543
Q ss_pred ----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 201 ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 201 ----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.|+++..++. .|+++++++++ +++++|++++++||||.+.|+++|.++||+||+++|+|++++.|.
T Consensus 117 ~l~~~gi~v~~~d~-----~d~e~le~ai~-----~~tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~ 186 (425)
T PRK06084 117 TLPRIGIETRFAAH-----DDIAALEALID-----ERTKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPV 186 (425)
T ss_pred hcccceeEEEEECC-----CCHHHHHHHhc-----cCCcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 4777777754 38999999998 579999999999999999999999999999999999999998775
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC-cEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccc-----cc-
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS-PGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLE-----DI- 348 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~-----~~- 348 (609)
....+ . .++|+++.|+||+++|++. +|.+++. ...- ........ . . +...+..|.. ..
T Consensus 187 ~~~p~-~---~gaDivv~S~tK~l~G~g~~~gG~v~~~~~~~-~~~~~~~~-~--~------~~~~~~~~~~~~~~~~~g 252 (425)
T PRK06084 187 LCRPF-E---HGADIVVHSLTKYIGGHGTSIGGIVVDSGKFP-WAEHKERF-A--L------LNTPDPSYHGVTYTEAFG 252 (425)
T ss_pred cCChh-h---cCCCEEEECchhcccccccceeEEEEeCCccc-hhhccccc-c--c------cccCCcccccchhhhhcc
Confidence 43222 2 2789999999999998854 4444543 3210 00000000 0 0 0000000100 00
Q ss_pred ------ccc--ccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-----------
Q 038499 349 ------EER--ESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS----------- 408 (609)
Q Consensus 349 ------~~r--~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~----------- 408 (609)
..+ ...+.-..+.-..+.+ .+......+...++..+.+..+.+.|+++|.+. |+-|.-
T Consensus 253 ~~~~~~~~~~~~~~~~g~~l~~~~a~l--~lrgl~tl~~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~ 330 (425)
T PRK06084 253 PAAFIGRCRVVPLRNMGAALSPFNAFL--ILQGLETLALRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARR 330 (425)
T ss_pred hHHHHHHHHHHHHHhcCCCCCHHHHHH--HHcCcCcHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHH
Confidence 000 0001101111112221 111233456667778888999999999999875 444421
Q ss_pred --CC-CcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHH
Q 038499 409 --TK-RQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQI 482 (609)
Q Consensus 409 --~~-r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~ 482 (609)
.. ..++++|.+.. +. .....+.+.| +.+.+.+.-|...+ .|.......+.++...
T Consensus 331 ~~~g~~gg~~s~~~~~-~~---------------~~~~~f~~~l-~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~-- 391 (425)
T PRK06084 331 YMGGKPASILSFGIKG-GQ---------------AAGARFIDAL-KLVVRLVNIGDAKSLACHPASTTHRQLNDEELE-- 391 (425)
T ss_pred hCCCCcceEEEEEecC-CH---------------HHHHHHHHhC-CcceeccccCCCceeeeCCCcCCcccCCHHHHH--
Confidence 11 35688888865 21 1134555666 45666566554332 1211111122221111
Q ss_pred HHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 483 RSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 483 ~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
..|+.++.||||++.- |.+.+++.|+..+.
T Consensus 392 -------~~gi~~~liR~svGlE----d~~dLi~dl~~Al~ 421 (425)
T PRK06084 392 -------KAGVSRDMVRLSIGIE----HIDDIIADLAQALD 421 (425)
T ss_pred -------hcCCCCCeEEEEeccC----CHHHHHHHHHHHHH
Confidence 2567789999999964 45555555555443
|
|
| >PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.3e-19 Score=189.26 Aligned_cols=327 Identities=15% Similarity=0.089 Sum_probs=207.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
...+++++.+++++|.+ .++.++|||. ||..++.+++ +++|| +|+++++.+++...++..
T Consensus 25 ~~~~~fE~~~a~~~g~~---~~~~~~sgt~-Al~~al~~l~--------------~~~gd--eVi~p~~t~~~~~~ai~~ 84 (363)
T PF01041_consen 25 PYVEEFEKEFAEYFGVK---YAVAVSSGTS-ALHLALRALG--------------LGPGD--EVIVPAYTFPATASAILW 84 (363)
T ss_dssp HHHHHHHHHHHHHHTSS---EEEEESSHHH-HHHHHHHHTT--------------GGTTS--EEEEESSS-THHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---eEEEeCChhH-HHHHHHHhcC--------------CCcCc--eEecCCCcchHHHHHHHH
Confidence 35778899999999975 5677767766 7888888887 68999 799999999999999999
Q ss_pred cCceEEEEecC-CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccc
Q 038499 201 SLAEVVEIGLD-DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 201 ~G~~vv~v~~~-~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~i 279 (609)
.|++++.++++ .++.+|+++++++|+ +++++|++.| .-|...|+++|.++|++||+++|.|+||+.|...-
T Consensus 85 ~G~~pv~~Di~~~~~~id~~~~~~~i~-----~~t~ai~~~h---~~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~ 156 (363)
T PF01041_consen 85 AGAEPVFVDIDPETLNIDPEALEKAIT-----PKTKAILVVH---LFGNPADMDAIRAIARKHGIPLIEDAAQAFGARYK 156 (363)
T ss_dssp TT-EEEEE-BETTTSSB-HHHHHHHHH-----TTEEEEEEE----GGGB---HHHHHHHHHHTT-EEEEE-TTTTT-EET
T ss_pred hccEEEEEeccCCcCCcCHHHHHHHhc-----cCccEEEEec---CCCCcccHHHHHHHHHHcCCcEEEccccccCceeC
Confidence 99999999999 488999999999999 6899888876 55889999999999999999999999999875432
Q ss_pred cCCCCCCCCccEEEEcCC--CCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCCh
Q 038499 280 DVRSGQTDGYDAIFLSTH--KFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP 357 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~h--K~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp 357 (609)
+ +..+. .-|+.++|+| |.+....| |+++++++... ++++..... |... .....|..........-..
T Consensus 157 g-~~~G~-~gd~~~fSf~~~K~i~~geG-G~v~~~~~~~~-~~~~~~~~~-g~~~------~~~~~~~~~~~~g~n~rm~ 225 (363)
T PF01041_consen 157 G-RPVGS-FGDIAIFSFHPTKIITTGEG-GAVVTNDPELA-ERARALRNH-GRSR------DAFRRYRHELPPGYNFRMS 225 (363)
T ss_dssp T-EETTS-SSSEEEEESSTTSSS-SSS--EEEEESTHHHH-HHHHHHTBT-TEET------SECSTTEESSSS--B-B-B
T ss_pred C-EeccC-CCCceEecCCCCCCCcCCCC-eeEEecHHHHH-HHhhhhhcc-CcCc------cccccccccccCCcccccH
Confidence 2 11111 2288888875 99975555 99999875421 111111111 1100 0000010000000011112
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCC-cce--EEEEeccCCCCCcCCCCCCC
Q 038499 358 QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKR-QAI--LSFNIHSSTINSSLGENTKT 434 (609)
Q Consensus 358 ~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r-~~~--~~f~~~~~~~~~~~~~~~~~ 434 (609)
++ .|++... +....+.+.++.+++.+++.+.|+.++++..+....... ... +.+.+.+ .
T Consensus 226 ~~----~AAigl~--QL~~L~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~-~----------- 287 (363)
T PF01041_consen 226 EL----QAAIGLA--QLKRLDEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPD-E----------- 287 (363)
T ss_dssp HH----HHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETC-C-----------
T ss_pred HH----HHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHhcCCCcccccccccccccccccccccccc-c-----------
Confidence 22 2332222 223577788888899999999999999987765433221 233 3333332 1
Q ss_pred CCCCCCChHHHHHHHhhhcCcEeccCcc-cCC--hhhhhhc---CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCH
Q 038499 435 ETDKPLHGPFVATLLNDLFGIQARGGCA-CAG--PYGHHLL---DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSN 508 (609)
Q Consensus 435 ~~~~~l~~~~v~~~L~~~~GI~v~~G~~-ca~--p~~~~ll---~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ 508 (609)
...+.+.+.+.|.+. ||.++.... +-. |.-.... .-+-+.++.+. ...+.|.++..+++
T Consensus 288 ---~~~~rd~l~~~L~~~-GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~-----------~r~l~LP~~~~lt~ 352 (363)
T PF01041_consen 288 ---ALADRDELVEALRAR-GIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLS-----------QRLLSLPIHPRLTE 352 (363)
T ss_dssp ---GCSTHHHHHHHHHHT-TBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHH-----------HHEEEEEHSTTSCH
T ss_pred ---ccchHHHHHHHHHHC-CCcccccccCchhhhHHHHhcCccccCCCHHHHHHH-----------hCeEECcCCCCCCH
Confidence 013578899999765 999997651 111 1100110 11224444442 47899999999999
Q ss_pred HHHHHHHHHHH
Q 038499 509 EEFEFTLEALE 519 (609)
Q Consensus 509 eeid~ll~al~ 519 (609)
+|+++++++|+
T Consensus 353 edv~~I~~~ir 363 (363)
T PF01041_consen 353 EDVDYIAEAIR 363 (363)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHhhccC
Confidence 99999999985
|
The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A .... |
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-19 Score=203.03 Aligned_cols=351 Identities=18% Similarity=0.154 Sum_probs=226.7
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC--CcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE--DAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~--~~vift~sGttaal 153 (609)
+++.|+.+.+. ++|+.+.+++.+.+... +. . .+ ..+.+..+++++++.+|.+.+ ++|+++ +|+++++
T Consensus 698 ~vI~LsinE~d~ppPp~V~eAi~eal~~~--~~-s----~g--~pdlr~aLa~~la~~~Gv~~d~~e~IIvt-~Gs~elL 767 (1082)
T PLN02672 698 SLIHMDVDESFLPVPSAVKASIFESFVRQ--NI-S----ES--ETDPRPSILQFIKSNYGFPTDSCTEFVYG-DTSLALF 767 (1082)
T ss_pred CEEEEeCCCCCCCCCHHHHHHHHHHHhhc--CC-C----CC--ChHHHHHHHHHHHHHhCcCCCCCCEEEEe-CCHHHHH
Confidence 67888877554 46778888888766421 11 1 11 234578899999999898654 367776 8999999
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~ 231 (609)
..++.++ +++|| .|+++.+.|+.+...++..|++++.|++++ +..+|+++|+++++.
T Consensus 768 ~lll~aL---------------l~pGD--~VLVp~PtY~~Y~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~---- 826 (1082)
T PLN02672 768 NKLVLCC---------------VQEGG--TLCFPAGSNGTYVSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLET---- 826 (1082)
T ss_pred HHHHHHH---------------cCCCC--EEEEeCCChHHHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhcc----
Confidence 8888876 37898 799999999999999999999999999974 468899999999872
Q ss_pred CCceEEEEeccc-CccccccC---HHHHHHHHHHhCCeEEEeccccCC-cc--c---ccCCC----CCC---CCccEEEE
Q 038499 232 KRPILGSFSACS-NVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-YV--E---IDVRS----GQT---DGYDAIFL 294 (609)
Q Consensus 232 ~~~~lv~~s~~s-n~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~-~~--~---id~~~----~~~---~~~D~v~~ 294 (609)
.+.+++++++|+ ||||.+.+ +++|+++|++||+++|+|++++.- +. + .++.+ ... ...-+++.
T Consensus 827 ~~~~~I~L~nPnhNPTG~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~ 906 (1082)
T PLN02672 827 VKKPWVYISGPTINPTGLLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLG 906 (1082)
T ss_pred CCCCEEEEECcCCCCcCccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEe
Confidence 134578888997 99999987 456788899999999999998621 11 1 11111 000 01235666
Q ss_pred cCCCCCCCCC-CcEEEEEech-hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHH
Q 038499 295 STHKFLGGPG-SPGILLMTKA-LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWV 371 (609)
Q Consensus 295 S~hK~lggp~-g~G~L~~~~~-~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~ 371 (609)
|++|.++.|+ .+|+++++++ + ++.+... .. . .+...+.+.. .+++++..
T Consensus 907 SfSKkf~lpGLRIGylIap~~eL--i~~l~~~------------------------~~-~-s~~~~~~q~Aaaaalall~ 958 (1082)
T PLN02672 907 GLSTELLSGGHEFGFLALNDSVL--IDAFHSA------------------------PG-L-SRPHSTLKYTIKKLLGLKN 958 (1082)
T ss_pred CcHHhhccHHHHheeEEeCCHHH--HHHHHHh------------------------hh-h-cCCCcHHHHHHHHHHHHHh
Confidence 9998887553 4999999755 5 2222110 00 0 0111112221 22222110
Q ss_pred -HHh---cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcC-CCCCC-CCCCCCCChHHH
Q 038499 372 -KEY---IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSL-GENTK-TETDKPLHGPFV 445 (609)
Q Consensus 372 -~~~---~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~-~~~~~-~~~~~~l~~~~v 445 (609)
+.. ......++..++.++++.+.|+++ ++.+..+ ..+++.|.... ...... .-+.. ...+..++..++
T Consensus 959 ~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-Gi~v~~P----eGGFfLwl~l~-~~l~~~~~~~~~~~~~~~~lds~ef 1032 (1082)
T PLN02672 959 QKSSDLLDGVAEQKKILKSRAERLKETLEAC-GWDVLEP----QGGISMVAKPS-AYLGKTVKLKSIDGDTGIKLDSSNI 1032 (1082)
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-CCeEecC----CcEEEEEEEcc-ccccccccccccccccccCCCHHHH
Confidence 000 123445556777888899999887 7777654 34555554322 100000 00000 000112467889
Q ss_pred HHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 446 ATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 446 ~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
++.|.++.||.+++|..|. .++|+||+++ .++++++..++.|+...+
T Consensus 1033 ae~LLee~GVaV~PGs~FG-----------------------------~~g~~RIsfa--~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672 1033 REAILKSTGLCINSSSWTG-----------------------------IPGYCRFSFA--LEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred HHHHHHcCCEEEecCcccC-----------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence 9989887899999986443 1489999998 478899999999987543
|
|
| >PLN02242 methionine gamma-lyase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-19 Score=192.25 Aligned_cols=315 Identities=16% Similarity=0.100 Sum_probs=197.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+++......+++++.+++++|++. ++++++|+ +++..++..+ +++|| .|+++...|+.+
T Consensus 70 Y~r~~~Pt~~~LE~~lA~l~g~~~---~l~~~sG~-~Ai~~al~al---------------~~~GD--~Vl~~~~~Y~~~ 128 (418)
T PLN02242 70 YSRHFNPTVLNLGRQMAALEGTEA---AYCTASGM-SAISSVLLQL---------------CSSGG--HVVASNTLYGGT 128 (418)
T ss_pred ccCCCChhHHHHHHHHHHHhCCCe---EEEEccHH-HHHHHHHHHH---------------hCCCC--EEEEcCCcHHHH
Confidence 344445667889999999999863 45564666 5677666655 47899 688888888776
Q ss_pred HHHH-----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEe
Q 038499 195 LLSW-----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (609)
Q Consensus 195 ~~~~-----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD 269 (609)
...+ +..|++++.++.+ |+++++++++. .++++|++++++||||.+.|+++|+++||+||+++|+|
T Consensus 129 ~~~~~~~~~~~~G~~~~~~d~~-----d~e~l~~~i~~----~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livD 199 (418)
T PLN02242 129 HALLAHFLPRKCNITTTFVDIT-----DLEAVKKAVVP----GKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVD 199 (418)
T ss_pred HHHHHHhhhhccCceEEEcCCC-----CHHHHHHhcCc----CCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEE
Confidence 5544 2368888877653 89999999972 25999999999999999999999999999999999999
Q ss_pred ccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 270 FAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 270 ~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
++++... .+...+ +.|+++.|++|+++|++. .|+++.++++ +..+.....+
T Consensus 200 ea~~~~~--~~~~~~---g~divv~S~SK~l~g~g~~~gG~iv~~~~l--i~~l~~~~~~-------------------- 252 (418)
T PLN02242 200 NTFAPMV--LSPARL---GADVVVHSISKFISGGADIIAGAVCGPAEL--VNSMMDLHHG-------------------- 252 (418)
T ss_pred CCCCccC--CCHHHc---CCcEEEEeCccccCCCCCceEEEEEcCHHH--HHHHHHHhhh--------------------
Confidence 9986332 222222 689999999999998764 4888888877 3332211000
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCC--C--------------CCC
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNT--S--------------TKR 411 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~--~--------------~~r 411 (609)
.....|.+...+. +++... .....+...++.++.++++.+.|+++ +++++.|. + ...
T Consensus 253 --~~~~~g~~~~~~~--A~l~~~--~l~tl~~r~~~~~~~a~~la~~L~~~-~~~V~yP~l~~~p~~~~~~~~~~~~~g~ 325 (418)
T PLN02242 253 --ALMLLGPTMNPKV--AFELSE--RLPHLSLRMKEHCRRAMEYAKRMKEL-GLKVIYPGLEDHPQHALLKSMANKGYGF 325 (418)
T ss_pred --hhhccCCCCCHHH--HHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhC-CCEEECCCCCCCccHHHHHHhcccCCCc
Confidence 0011122211111 111111 11234445567788899999999988 47777553 1 023
Q ss_pred cceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhc----CcEeccCcccCC---hhhhhhcCCChhHHHHHHH
Q 038499 412 QAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLF----GIQARGGCACAG---PYGHHLLDLDEAQSYQIRS 484 (609)
Q Consensus 412 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~----GI~v~~G~~ca~---p~~~~ll~i~~~~~~~~~~ 484 (609)
.++++|.+.. . -....+++.| +.+ .+.+..|...+- |..+....+..+...
T Consensus 326 g~~~sf~l~~-~----------------~~~~~f~~~l-~~~~~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~~~---- 383 (418)
T PLN02242 326 GGLLCLDMDT-E----------------ERANRLMRYL-QNSTQFGFMAVSLGYYETLMSCSGSSTSSELDPEEKA---- 383 (418)
T ss_pred eeEEEEEECC-H----------------HHHHHHHHHh-hcccccceeeecCCCCCceeeCCCccccccCCHHHHH----
Confidence 4677777743 1 1233455555 222 445555543331 222222223322211
Q ss_pred HHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 485 AIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 485 ~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
..|+.++.||||++.-. +.+.+++-|+..++
T Consensus 384 -----~~gi~~~liRlsvGlE~---~~~dli~dl~~al~ 414 (418)
T PLN02242 384 -----AAGISPGLVRMSVGYTG---TLEQRWSQFEKALS 414 (418)
T ss_pred -----hcCCCCCeEEEEecCCC---CHHHHHHHHHHHHH
Confidence 15667899999999642 24455555555443
|
|
| >TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=191.81 Aligned_cols=302 Identities=14% Similarity=0.072 Sum_probs=191.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH---
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS--- 197 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--- 197 (609)
.....+++.++++.|++ +++++++| ++|+..++..+ +++|| .|++++..|+.....
T Consensus 50 Pt~~~lE~~lA~l~g~~---~~~~~~sG-~~Ai~~al~al---------------l~~GD--~Vl~~~~~y~~t~~~~~~ 108 (377)
T TIGR01324 50 LTHFALQDAMCELEGGA---GCYLYPSG-LAAVTNSILAF---------------VKAGD--HVLMVDSAYEPTRYFCDI 108 (377)
T ss_pred ccHHHHHHHHHHHhCCC---cEEEECcH-HHHHHHHHHHh---------------cCCCC--EEEEcCCCcHHHHHHHHH
Confidence 34677899999999974 45666455 55677766655 47899 688888888765532
Q ss_pred -HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 198 -WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 198 -~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
....|+++..++.+ +.++++++++ ++|++|++++++|++|.+.|+++|+++||++|+++++|++++.|.
T Consensus 109 ~~~~~gi~v~~~d~~-----~~e~l~~~i~-----~~tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~ 178 (377)
T TIGR01324 109 VLKRMGVDITYYDPL-----IGEDIATLIQ-----PNTKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGL 178 (377)
T ss_pred HHHhcCcEEEEECCC-----CHHHHHHhcC-----CCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccc
Confidence 24468888877543 2378888887 689999999999999999999999999999999999999999886
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
..-.+ . .++|+++.|.|||++|+.+ .|+++.+++. ++.+... +...
T Consensus 179 ~~~pl-~---~gaDivv~S~tK~l~G~~d~~gG~v~~~~~~--~~~l~~~--------------------------~~~~ 226 (377)
T TIGR01324 179 LFKPL-E---HGVDISIQAGTKYLVGHSDIMIGTVVANART--WDQLREH--------------------------SYLM 226 (377)
T ss_pred ccCcc-c---cCceEEEecCceeccCCCCceEEEEEeCHHH--HHHHHHH--------------------------HHHh
Confidence 63222 2 2889999999999999865 5888887765 2222100 0011
Q ss_pred CC-hhHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce-EEeCCC--C-----------CCCcceEEE
Q 038499 355 GT-PQVIQ--MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI-KILGNT--S-----------TKRQAILSF 417 (609)
Q Consensus 355 gt-p~i~~--~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i-~v~~~~--~-----------~~r~~~~~f 417 (609)
|+ .+... .+..++. -.....++..+.+..+.+.|++.|.+ +++-|. + ....++++|
T Consensus 227 G~~l~p~~a~~~~rgl~-------tl~~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~ 299 (377)
T TIGR01324 227 GQMVDADDAYTTLRGLR-------TLGVRLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSF 299 (377)
T ss_pred CCCCCHHHHHHHHhhhh-------hHHHHHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEE
Confidence 21 11111 1111111 12333456666777788888888877 455442 1 123568888
Q ss_pred EeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh-hhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 418 NIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY-GHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~-~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
.+.. .. ......+.+.| +.+++.+.-|...+--. .+. .+... . + .. .++.++
T Consensus 300 ~l~~-~~--------------~~~~~~~~~~l-~~~~~~~slG~~~sl~~~~~~--~~~~~--~--~--~~---~~~~~~ 352 (377)
T TIGR01324 300 VLQR-LT--------------QKQVHAFLDHL-QLFGLGYSWGGYESLALCNQP--ELGHR--P--N--IK---RNLEGP 352 (377)
T ss_pred EECC-CC--------------HHHHHHHHHhC-CcceEeccCCCccceeecCCC--CCCHH--H--H--Hh---ccCCCC
Confidence 8854 11 01245677777 56788877775422000 000 01100 0 1 11 233458
Q ss_pred EEEEecCCCCCHHHHHHHHHHHH
Q 038499 497 WTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~ 519 (609)
.||||++.-..++=++.+.++|+
T Consensus 353 liR~svGlE~~~dl~~dl~~al~ 375 (377)
T TIGR01324 353 LIRVHIGLENVDDLKADLKAGFE 375 (377)
T ss_pred EEEEEeCCCCHHHHHHHHHHHHh
Confidence 99999997544444444444443
|
This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys. |
| >PRK06959 putative threonine-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=190.05 Aligned_cols=276 Identities=16% Similarity=0.128 Sum_probs=184.5
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc
Q 038499 124 HEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA 203 (609)
Q Consensus 124 ~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (609)
.++++.+++++|..+.++|+++ +|++++|..+... +++|+ |++..+.|+.+...++..|+
T Consensus 56 ~~L~~~ia~~~~~~~~~~I~i~-~Gs~e~i~~l~~~----------------~~~g~---v~v~~P~y~~y~~~~~~~g~ 115 (339)
T PRK06959 56 DGLAACAARYYGAPDAAHVLPV-AGSQAAIRALPAL----------------LPRGR---VGIAPLAYSEYAPAFARHGH 115 (339)
T ss_pred HHHHHHHHHHhCCCCcccEEEC-cCHHHHHHHHHHh----------------cCCCe---EEEcCCCcHHHHHHHHHCCC
Confidence 5789999999999753488887 8999999876543 25665 67788899999889999999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHH---HHHhCCeEEEeccccCCccccc
Q 038499 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARL---LHQYGGFACFDFAASGPYVEID 280 (609)
Q Consensus 204 ~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~l---a~~~g~~vivD~A~~~~~~~id 280 (609)
+++.++.+. + .+. ..++++++++|+||||.+.+.+++.++ |.++++++|+|+++.-......
T Consensus 116 ~~~~v~~~~------~----~~~-----~~~~~v~l~nPnNPTG~~~s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s 180 (339)
T PRK06959 116 RVVPLDEAA------D----TLP-----AALTHLIVVNPNNPTAERLPAARLLRWHAQLAARGGTLIVDEAFADTLPAAS 180 (339)
T ss_pred EEEeecccc------h----hcc-----ccCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEECCCccCCCccc
Confidence 999988653 1 222 245789999999999999997776655 5578999999999764321122
Q ss_pred CCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhH
Q 038499 281 VRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV 359 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i 359 (609)
+.......--+++.|++|.+|-| ..+|++++++++ ++.+.... ...+.+.+
T Consensus 181 ~~~~~~~~~vi~l~SfSK~~gl~GlRiGy~v~~~~l--i~~l~~~~--------------------------~~~~vs~~ 232 (339)
T PRK06959 181 LAAHTDRPGLVVLRSVGKFFGLAGVRAGFVLAAPAL--LAALRDAL--------------------------GAWTVSGP 232 (339)
T ss_pred chhccCCCCEEEEecChhhcCCcchheEEEecCHHH--HHHHHHhc--------------------------CCCCCcHH
Confidence 22211001136778999999844 459999999887 33331110 00111122
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCC
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP 439 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
.+. ++.+ .+.+....+..+++.++.++++.+.|+++ ++++.. .+++.+.-.+
T Consensus 233 ~q~--a~~~-~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~------~~~f~~~~~~------------------ 284 (339)
T PRK06959 233 ARH--AVRA-AFADAAWQAAMRERLAADGARLAALLRAH-GFAVHA------TPLFSWTDDP------------------ 284 (339)
T ss_pred HHH--HHHH-HhCcHHHHHHHHHHHHHHHHHHHHHHHHC-CCCccC------cceEEEEeCC------------------
Confidence 221 1222 22222234566777788888999999887 665542 1344433322
Q ss_pred CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 440 LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 440 l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
+...+.+.|.+ .||.++ .|. .++++||+++ .+.+|+++++++|+
T Consensus 285 -~~~~l~~~l~~-~GI~vr---~~~-----------------------------~~~~lRisi~--~~~~e~~~l~~al~ 328 (339)
T PRK06959 285 -RAAALHAALAR-RGIWTR---YFA-----------------------------PPPSVRFGLP--ADEAEWQRLEDALA 328 (339)
T ss_pred -CHHHHHHHHHh-CCeEEE---ECC-----------------------------CCCeEEEECC--CCHHHHHHHHHHHH
Confidence 34678888866 599998 232 1479999983 28899999999999
Q ss_pred HHHHhcc
Q 038499 520 FIAIYGQ 526 (609)
Q Consensus 520 ~v~~~~~ 526 (609)
.+.+...
T Consensus 329 ~~~~~~~ 335 (339)
T PRK06959 329 ECVPTLA 335 (339)
T ss_pred HHHHHHh
Confidence 8877654
|
|
| >TIGR03539 DapC_actino succinyldiaminopimelate transaminase | Back alignment and domain information |
|---|
Probab=99.85 E-value=2e-19 Score=190.73 Aligned_cols=309 Identities=15% Similarity=0.058 Sum_probs=193.2
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG---GGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g---~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
+.++.+.+++.+... ... |....+..++++++.+++.+.+| .+++ +|++| +|++.++..+...+.
T Consensus 34 ~~~~~~~~~~~~~~~-~~~------Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~-~I~it-~G~~~~i~~~~~~l~--- 101 (357)
T TIGR03539 34 PVPPLIRAALAAAAD-APG------YPQTWGTPELREAIVDWLERRRGVPGLDPT-AVLPV-IGTKELVAWLPTLLG--- 101 (357)
T ss_pred CCCHHHHHHHHHHHh-hCC------CCcccCCHHHHHHHHHHHHHhcCCCCCCcC-eEEEc-cChHHHHHHHHHHHc---
Confidence 445666777655432 111 11112234455555555555544 5565 89888 899989988877663
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
+++|| .|+++.+.|+.+....+..|++++.++ ++++ +.. ++++++++++++|
T Consensus 102 -----------~~~gd--~Vl~~~p~y~~~~~~~~~~g~~~~~v~-------~~~~----l~~----~~~~~v~~~~p~N 153 (357)
T TIGR03539 102 -----------LGPGD--TVVIPELAYPTYEVGALLAGATPVAAD-------DPTE----LDP----VGPDLIWLNSPGN 153 (357)
T ss_pred -----------CCCCC--EEEECCCCcHHHHHHHHhcCCEEeccC-------Chhh----cCc----cCccEEEEeCCCC
Confidence 37888 799999999999888888899988774 2332 222 4789999999999
Q ss_pred ccccccC---HHHHHHHHHHhCCeEEEeccccC-CcccccCCCCCC------CCccEEEEcCCCCCCCCC-CcEEEEEec
Q 038499 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASG-PYVEIDVRSGQT------DGYDAIFLSTHKFLGGPG-SPGILLMTK 313 (609)
Q Consensus 245 ~TG~~~d---l~~I~~la~~~g~~vivD~A~~~-~~~~id~~~~~~------~~~D~v~~S~hK~lggp~-g~G~L~~~~ 313 (609)
|||.+.+ +++|.++|++||+++++|+++.. .+....+..+.. ..-.+++.|++|.+|.|+ .+|++++++
T Consensus 154 PtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~R~G~~i~~~ 233 (357)
T TIGR03539 154 PTGRVLSVDELRAIVAWARERGAVVASDECYLELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGYRAGFVAGDP 233 (357)
T ss_pred CcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccCCCCccceecccCCCccccEEEEeccccccCCCceeEEEEecCH
Confidence 9999987 45688999999999999999752 111111111100 012477789999987553 389999888
Q ss_pred hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 038499 314 ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALE 393 (609)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~ 393 (609)
++ +..+.... .....+++.+.+.+ +.++ +.+....+.++++.++.++++.+
T Consensus 234 ~~--~~~~~~~~------------------------~~~~~~~~~~~q~~--~~~~-l~~~~~~~~~~~~~~~~~~~~~~ 284 (357)
T TIGR03539 234 AL--VAELLTVR------------------------KHAGLMVPAPVQAA--MVAA-LGDDGHVAEQKARYAARRAQLKP 284 (357)
T ss_pred HH--HHHHHHHH------------------------hhcccCCCHHHHHH--HHHH-cCCHHHHHHHHHHHHHHHHHHHH
Confidence 77 22221110 00001122222221 1122 22222345566666777888888
Q ss_pred HhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcC
Q 038499 394 RLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 394 ~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~ 473 (609)
.|++. ++.+..+ ..+++.+...+ .+..++.+.|. +.||.+++|..+. +.
T Consensus 285 ~L~~~-g~~~~~p----~~~~~~~~~~~------------------~~~~~~~~~l~-~~gV~v~pg~~f~-~~------ 333 (357)
T TIGR03539 285 ALEKA-GFRIDHS----EAGLYLWATRG------------------EDAWDTVDRLA-ELGILVAPGDFYG-PA------ 333 (357)
T ss_pred HHHHc-CCCCcCC----CccEEEEEECC------------------CCHHHHHHHHH-hCCEEECCccccC-CC------
Confidence 88775 6665543 34565555544 13567778785 4699999887543 10
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
.++++||+++. ++++++..++.|
T Consensus 334 --------------------~~~~iRis~~~--~~~~i~~~~~~l 356 (357)
T TIGR03539 334 --------------------GSQHVRVALTA--TDERIAAAVARL 356 (357)
T ss_pred --------------------CCCeEEEEecC--CHHHHHHHHHhh
Confidence 14799999974 678888888765
|
This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). |
| >PRK07582 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=192.49 Aligned_cols=291 Identities=17% Similarity=0.107 Sum_probs=185.3
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH---
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW--- 198 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--- 198 (609)
...++++.++++. .+ +.+++ ++|+. ++..++..+ +++|| .|+++...|+.....+
T Consensus 52 ~~~~Le~~lA~l~--~~-~~v~~-~sG~~-Ai~~~l~al---------------l~~Gd--~Vl~~~~~y~~~~~~~~~~ 109 (366)
T PRK07582 52 TWRALEAALGELE--GA-EALVF-PSGMA-AITAVLRAL---------------LRPGD--TVVVPADGYYQVRALAREY 109 (366)
T ss_pred cHHHHHHHHHHHc--CC-CEEEE-CCHHH-HHHHHHHHh---------------cCCCC--EEEEeCCCcHhHHHHHHHH
Confidence 3677889999998 22 25555 58875 677776655 47898 6888877776654432
Q ss_pred -HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC--
Q 038499 199 -RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP-- 275 (609)
Q Consensus 199 -~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~-- 275 (609)
...|++++.++.++++ + .+. ++++++++++++||||.+.|+++|+++||++|+++++|++++.+
T Consensus 110 l~~~G~~v~~v~~~~~~----~----~~~-----~~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~ 176 (366)
T PRK07582 110 LAPLGVTVREAPTAGMA----E----AAL-----AGADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLG 176 (366)
T ss_pred HhcCeEEEEEECCCChH----H----Hhc-----cCceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccc
Confidence 3469999999875321 1 223 47899999999999999999999999999999999999997543
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
..+++ + ++|+++.|+|||++|+.| .|+++.+ +++ .+.+... ...
T Consensus 177 ~~p~~---~---g~Divv~S~sK~l~G~~g~~~G~v~~~~~~l--~~~l~~~-------------------------~~~ 223 (366)
T PRK07582 177 QRPLE---L---GADLVVASDTKALTGHSDLLLGYVAGRDPEL--MAAVERW-------------------------RLL 223 (366)
T ss_pred cCchh---c---CCcEEEecccccccCCCCeeEEEEEcCcHHH--HHHHHHH-------------------------HHH
Confidence 33332 2 679999999999999877 5888875 444 2222110 001
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--CCC-----------CcceEEEE
Q 038499 353 SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--STK-----------RQAILSFN 418 (609)
Q Consensus 353 ~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~~~-----------r~~~~~f~ 418 (609)
...+++.... .+... ...-.+...++..+++..+.+.|+++|.+. |.-|. +.+ ..++++|.
T Consensus 224 ~g~~~~~~~a---~l~~r--~l~tl~~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~ 298 (366)
T PRK07582 224 AGAIPGPFEA---WLAHR--SLGTLGLRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFE 298 (366)
T ss_pred hCCCCCHHHH---HHHHh--ccccHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEE
Confidence 1122222111 11111 111234555777788999999999988875 33221 112 56788888
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEE
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWT 498 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~i 498 (609)
+.. ...+.+.|.. .++... +.+..+. +.+. ...+.. | .++.++.|
T Consensus 299 ~~~--------------------~~~~~~~~~~-l~~~~~-~~s~G~~--~sl~---------~~~~~~-~-~~~~~~li 343 (366)
T PRK07582 299 LAD--------------------AAAAERFVAA-SRLVVA-ATSFGGV--HTSA---------DRRARW-G-DAVPEGFV 343 (366)
T ss_pred eCC--------------------HHHHHHHHHh-CCccee-cccCCCc--cchh---------hhHHHc-C-CCCCCCeE
Confidence 753 3456666643 355432 1111110 0010 001111 1 22457899
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 038499 499 RISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 499 Rls~~~~~t~eeid~ll~al~~ 520 (609)
|+|+|+.+.++.++.+.++|+.
T Consensus 344 R~svGlE~~~dli~dl~~al~~ 365 (366)
T PRK07582 344 RLSCGIEDTDDLVADLERALDA 365 (366)
T ss_pred EEEeccCCHHHHHHHHHHHHhh
Confidence 9999999998889998888864
|
|
| >PRK07810 O-succinylhomoserine sulfhydrylase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=192.59 Aligned_cols=307 Identities=16% Similarity=0.144 Sum_probs=194.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH---
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS--- 197 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--- 197 (609)
...+++++.++++.|.+ +.+ ++++|+.+ +..++..+ +++|| +|+++...|......
T Consensus 70 p~~~~le~~lA~l~g~~--~al-~~~sG~~A-i~~~l~al---------------l~~Gd--~Vl~~~~~~~~t~~~~~~ 128 (403)
T PRK07810 70 PTVSMFEERLRLIEGAE--ACF-ATASGMSA-VFTALGAL---------------LGAGD--RLVAARSLFGSCFVVCNE 128 (403)
T ss_pred chHHHHHHHHHHHhCCC--cEE-EECChHHH-HHHHHHHH---------------hCCCC--EEEEccCCcchHHHHHHH
Confidence 33678999999999976 244 44588875 55454444 47898 688888777665433
Q ss_pred -HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 198 -WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 198 -~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.+..|++++.++.+ |+++++++++ +++++|++++++||||.+.|+++|+++||++|+++++|++++.|.
T Consensus 129 ~~~~~G~~v~~vd~~-----d~~~l~~ai~-----~~tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~ 198 (403)
T PRK07810 129 ILPRWGVETVFVDGE-----DLSQWEEALS-----VPTQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPL 198 (403)
T ss_pred HHHHcCcEEEEECCC-----CHHHHHHhcC-----cCceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccc
Confidence 34579999999753 8999999998 689999999999999999999999999999999999999998775
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCC-CCCCccCCCceEeeccccccccccccccccccc
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGS-FPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~-~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
....+ . .++|++++|+||+++|.+. .|+++.+++. +.. +... .+..
T Consensus 199 ~~~~~-~---~gaDivv~S~tK~l~g~g~~~gG~v~~~~~~--~~~~l~~~-------------------------~~~~ 247 (403)
T PRK07810 199 LQRGL-P---LGADVVVYSGTKHIDGQGRVLGGAILGDREY--IDGPVQKL-------------------------MRHT 247 (403)
T ss_pred cCChh-h---cCCcEEEccCCceecCCcCceeEEEEeChHH--HHHHHHHH-------------------------HHHh
Confidence 53332 2 2789999999999997653 4888888775 211 1100 0000
Q ss_pred CCC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--CC-----------CCcceEEEE
Q 038499 354 GGT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--ST-----------KRQAILSFN 418 (609)
Q Consensus 354 ~gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~~-----------~r~~~~~f~ 418 (609)
... +++.+ ++.+ ....-.+...++..+.+.++.+.|+++|.+. |+-|. +. ...+.++|.
T Consensus 248 g~~~s~~~a----~l~l--~~L~tl~~R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~ 321 (403)
T PRK07810 248 GPALSAFNA----WVLL--KGLETLALRVRHSNASALRIAEFLEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFE 321 (403)
T ss_pred CCCCCHHHH----HHHH--hccCcHHHHHHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEE
Confidence 111 11111 1111 1222355666777788888889999998875 44331 11 235678887
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC---hhhhhhcCCChhHHHHHHHHHhhCCCCCCC
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG---PYGHHLLDLDEAQSYQIRSAIQKGYVGVKP 495 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~---p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~ 495 (609)
+.. .... + .-....+++.| +.+.+.+.-|+..+- |.......+..+... ..|+.+
T Consensus 322 l~~-~~~~----------~-~~~~~~f~~~l-~l~~~~~slG~~~sl~~~p~~~~h~~~~~~~~~---------~~gi~~ 379 (403)
T PRK07810 322 LDA-PEDA----------A-KKRAFEVLDKL-RVIDISNNLGDAKSLITHPATTTHRAMGPEGRA---------AIGLGD 379 (403)
T ss_pred EcC-CCCc----------C-HHHHHHHHHhC-CceEEeccCCCCcceeeCCCccccccCCHHHHH---------hcCCCC
Confidence 754 2100 0 00123455555 456666565543321 211111122221111 145668
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 496 GWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 496 g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+.+|||++. |+++.+++.|+..
T Consensus 380 ~lvR~svGl----E~~~dli~dl~~A 401 (403)
T PRK07810 380 GVVRLSVGL----EDTDDLIADLDRA 401 (403)
T ss_pred CeEEEEecc----CCHHHHHHHHHHh
Confidence 999999996 4455555555443
|
|
| >PRK05939 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.1e-19 Score=192.10 Aligned_cols=158 Identities=18% Similarity=0.221 Sum_probs=126.9
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH---
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL--- 196 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--- 196 (609)
.....++++.++++.|+.. .++++ +|+ +|+..++..+ +++|| .|+++...|+++..
T Consensus 46 ~p~~~~lE~~la~leg~~~--~v~~s-sG~-~Ai~~~l~al---------------l~~Gd--~Vv~~~~~y~~t~~~~~ 104 (397)
T PRK05939 46 TPTTAALEAKITKMEGGVG--TVCFA-TGM-AAIAAVFLTL---------------LRAGD--HLVSSQFLFGNTNSLFG 104 (397)
T ss_pred CHHHHHHHHHHHHHhCCCe--EEEeC-CHH-HHHHHHHHHH---------------cCCCC--EEEECCCccccHHHHHH
Confidence 4457789999999999874 56665 785 5677776654 47999 68889888876543
Q ss_pred HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 197 SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.+...|++++.++.. |+++|+++++ ++|++|++++++||||.+.|+++|+++||++|+++++|++++.|.
T Consensus 105 ~l~~~G~~v~~v~~~-----d~e~l~~~l~-----~~tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~ 174 (397)
T PRK05939 105 TLRGLGVEVTMVDAT-----DVQNVAAAIR-----PNTRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPW 174 (397)
T ss_pred HHHhcCCEEEEECCC-----CHHHHHHhCC-----CCCeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCccccc
Confidence 455679999999863 8999999998 689999999999999999999999999999999999999987764
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC-cEEEEEe
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS-PGILLMT 312 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~L~~~ 312 (609)
. ++.... ++|+++.|+||+++|++. +|.+++.
T Consensus 175 ~-~~~~~~---gaDivv~S~sK~~~g~g~~igg~v~~ 207 (397)
T PRK05939 175 L-FRPKDV---GASLVINSLSKYIAGHGNALGGAVTD 207 (397)
T ss_pred c-cCcccc---CCEEEEecCeecccCCCCeEEEEEec
Confidence 2 333332 789999999999998754 5665554
|
|
| >PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.7e-19 Score=193.32 Aligned_cols=342 Identities=15% Similarity=0.069 Sum_probs=213.6
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL 202 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (609)
..++|+.+++++|.+ .+++| +|+++++..++.++ ++||| |+++.+.|.++....+..|
T Consensus 80 ~~~Lreaia~~~~~~---~vv~t-~ggt~A~~~~~~al---------------l~pGD---Vii~~p~~~~~~~~i~~~G 137 (460)
T PRK13238 80 YYRLEDAVKDIFGYP---YTIPT-HQGRAAEQILFPVL---------------IKKGD---VVPSNYHFDTTRAHIELNG 137 (460)
T ss_pred HHHHHHHHHHHhCCC---cEEEC-CCHHHHHHHHHHHh---------------CCCCC---EEccCCcccchHHHHHHcC
Confidence 567888999999974 68888 66677788877765 58999 6666666666666677889
Q ss_pred ceEEEEecCC----------CCCCCHHHHHHHHhhhccCCCceEEEEecccCccc-cccC---HHHHHHHHHHhCCeEEE
Q 038499 203 AEVVEIGLDD----------DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTG-IYSD---TRSIARLLHQYGGFACF 268 (609)
Q Consensus 203 ~~vv~v~~~~----------~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG-~~~d---l~~I~~la~~~g~~viv 268 (609)
++++.+++++ .|.+|+++|+++|++.. .++++++++++++|+|| .+.+ +++|.++|++||+++|.
T Consensus 138 ~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~-~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~ 216 (460)
T PRK13238 138 ATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVG-AENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVI 216 (460)
T ss_pred CEEEEEeccccccccccccccCCcCHHHHHHHHhhcC-CCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 9999999853 35599999999998421 13689999999999998 6765 57899999999999999
Q ss_pred eccccCC-----------cccccCCCC---CCCCccEEEEcCCCCCCCCCCcEEEEEec-hhhccCCCCCCccCCCceEe
Q 038499 269 DFAASGP-----------YVEIDVRSG---QTDGYDAIFLSTHKFLGGPGSPGILLMTK-ALYQLGSFPPSTCGGGTVNY 333 (609)
Q Consensus 269 D~A~~~~-----------~~~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~L~~~~-~~~~l~~~~p~~~ggg~v~~ 333 (609)
|+|+... +...++... .....|++++|++|.+.+|.| |+++.++ ++ ...++......
T Consensus 217 Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~G-G~i~~~d~~l--~~~~~~~~~~~----- 288 (460)
T PRK13238 217 DAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNIG-GLLCFRDEDL--FTECRTLCILY----- 288 (460)
T ss_pred ECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcce-eEEEcChHHH--HHHhhhccccc-----
Confidence 9987542 222222110 012479999999999888886 8999884 55 23332221100
Q ss_pred ecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcc
Q 038499 334 VNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA 413 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~ 413 (609)
+.....|..+.. ..+|++..+.+....+.+..+ .+.++++.+.|.+. |+.+..+. .+
T Consensus 289 ---------------~g~~t~~g~~~~--~~~Ala~~l~e~~~~~~~~~~-~~~~~~l~~~L~~~-G~~~~~p~----Gg 345 (460)
T PRK13238 289 ---------------EGFPTYGGLAGR--DMEALAVGLYEGMDEDYLAYR-IGQVEYLGEGLEEA-GVPIQTPA----GG 345 (460)
T ss_pred ---------------CCcccccCcHHH--HHHHHHhhHHHhhChHHHHHH-HHHHHHHHHHHHHC-CCCeEccC----Cc
Confidence 000012222222 122222222222222333333 33468888889876 88888763 24
Q ss_pred eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
++.|.-.. ... ....+.......++..|.++.||.+.++.++.-+.- ...+.. . --
T Consensus 346 ~~v~~d~~-~~~-------~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~-~~~~~~--~-------------~~ 401 (460)
T PRK13238 346 HAVFVDAG-KFL-------PHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRD-PKTGEQ--L-------------PA 401 (460)
T ss_pred eEEEEEch-hcC-------CCCCCCCCchHHHHHHHHHHcCeeeecccceecccC-CCCccc--c-------------CC
Confidence 44443222 100 000111123467888888889999987765543210 000100 0 00
Q ss_pred CCcEEEEecCC-CCCHHHHHHHHHHHHHHHHhcccccCCCcccccCCceee
Q 038499 494 KPGWTRISFPY-YMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTWCF 543 (609)
Q Consensus 494 ~~g~iRls~~~-~~t~eeid~ll~al~~v~~~~~~~~p~y~~~~~~~~w~~ 543 (609)
...++|++++- --|.++++++.++|+.+.++.. .++-|.|-+..-.-||
T Consensus 402 ~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~r~ 451 (460)
T PRK13238 402 PAELLRLAIPRRVYTQSHMDYVAEALKAVKENRE-SIKGLRFTYEPPVLRH 451 (460)
T ss_pred ccceEEEecccccCCHHHHHHHHHHHHHHHHhHh-hcCCeEEeecCcccee
Confidence 14899999972 2389999999999999986544 3446666555444444
|
|
| >PRK04311 selenocysteine synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=187.75 Aligned_cols=205 Identities=19% Similarity=0.185 Sum_probs=149.7
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
..+|.++.+.++.++.+.+++.+.+.. |.|.... ...+ .....+..+++.+++++|++. . ++++||+ +++..+
T Consensus 86 g~v~~tNlg~s~l~~~v~eav~~~~~~-~~~le~~-l~~g-~~g~r~~~~e~~lA~l~Gae~--a-~vv~sgt-aAl~l~ 158 (464)
T PRK04311 86 GVVLHTNLGRALLSEAAIEAVTEAARG-YSNLEYD-LATG-KRGSRDRALAALLCALTGAED--A-LVVNNNA-AAVLLA 158 (464)
T ss_pred ccEEeccCCCCCCCHHHHHHHHHHHhc-ccccccc-hhhc-ccchHHHHHHHHHHHHhCCCe--E-EEECCHH-HHHHHH
Confidence 567888888889999999999887654 3333211 1111 123446789999999999862 4 4554666 567766
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch----HH--HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN----LL--SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~----~~--~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~ 230 (609)
+..+ .+|| +|++++.+|+.+ .. .++..|+++++++.+ +..++++++++|+
T Consensus 159 l~~l----------------~~Gd--eVIvs~~e~~~~ggs~~i~~~~~~~G~~l~~v~~~--~~t~~~dle~aI~---- 214 (464)
T PRK04311 159 LNAL----------------AAGK--EVIVSRGELVEIGGAFRIPDVMRQAGARLVEVGTT--NRTHLRDYEQAIN---- 214 (464)
T ss_pred HHHh----------------CCCC--EEEEcchhhhhcCcchhhHHHHHHCCcEEEEECCC--CCCCHHHHHHhcC----
Confidence 6543 6788 799998877632 22 245679999999764 3457999999998
Q ss_pred CCCceEEEEecccCc--cc--cccCHHHHHHHHHHhCCeEEEeccccC---------CcccccCCCCCCCCccEEEEcCC
Q 038499 231 AKRPILGSFSACSNV--TG--IYSDTRSIARLLHQYGGFACFDFAASG---------PYVEIDVRSGQTDGYDAIFLSTH 297 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~--TG--~~~dl~~I~~la~~~g~~vivD~A~~~---------~~~~id~~~~~~~~~D~v~~S~h 297 (609)
++|+++++.|++|+ +| ...|+++|+++||+||+++++|.+++. +..+ ++......|+|++++|+|
T Consensus 215 -~~TklV~~vh~sN~~i~G~~~~~dl~eI~~lak~~gi~vivD~gsG~l~~~~~~gl~~~p-~~~~~l~~GaDiv~fSg~ 292 (464)
T PRK04311 215 -ENTALLLKVHTSNYRIEGFTKEVSLAELAALGKEHGLPVVYDLGSGSLVDLSQYGLPDEP-TVQELLAAGVDLVTFSGD 292 (464)
T ss_pred -ccCeEEEEEcCCCccccccCCcCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCC-chhhHHhcCCcEEEecCc
Confidence 68999999999997 45 568999999999999999999996322 1122 222211238999999999
Q ss_pred CCCCCCCCcEEEEEechh
Q 038499 298 KFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 298 K~lggp~g~G~L~~~~~~ 315 (609)
||+|||. .|++++++++
T Consensus 293 K~LgGp~-~G~i~g~~~l 309 (464)
T PRK04311 293 KLLGGPQ-AGIIVGKKEL 309 (464)
T ss_pred ccccCCc-eEEEEEcHHH
Confidence 9999997 6999999988
|
|
| >PRK07269 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-19 Score=190.88 Aligned_cols=298 Identities=14% Similarity=0.107 Sum_probs=187.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
....++++.++++.|.+ .++.+ +|.++|+..++.. +++|| +|+++...|......+..
T Consensus 54 p~~~~le~~lA~leg~~---~~v~~-~sG~aAi~~~l~~----------------l~~GD--~VI~~~~~yg~~~~~~~~ 111 (364)
T PRK07269 54 PTRAKLEETLAAIESAD---YALAT-SSGMSAIVLAFSV----------------FPVGS--KVVAVRDLYGGSFRWFNQ 111 (364)
T ss_pred ccHHHHHHHHHHHhCCC---eEEEe-CCHHHHHHHHHHH----------------hCCCC--EEEEecCCcCchHHHHHH
Confidence 34678999999999864 56666 4555577776643 36899 688888777765533322
Q ss_pred c----CceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 201 S----LAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 201 ~----G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
. +.++. ...|+++++++++ ++|++|++++|+||||.+.|+++|+++||++|+++++|++++.++
T Consensus 112 ~~~~~~~~~~-------~~~d~~~l~~~i~-----~~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~ 179 (364)
T PRK07269 112 QEKEGRFHFT-------YANTEEELIAAIE-----EDTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPI 179 (364)
T ss_pred HHhcCcEEEE-------ecCCHHHHHHhcC-----cCceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccc
Confidence 1 22211 1248999999998 689999999999999999999999999999999999999977665
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
....+. .++|++++|+||+++|++. .|+++.+++.. .+++... +...
T Consensus 180 ~~~pl~----~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l-~~~~~~~--------------------------~~~~ 228 (364)
T PRK07269 180 YQRPIE----LGADIVLHSATKYLSGHNDVLAGVVVTNDLEL-YEKLFYN--------------------------LNTT 228 (364)
T ss_pred cCCchh----hCCcEEEecCceeccCCCcccceEEEeCcHHH-HHHHHHH--------------------------HHHh
Confidence 432221 2789999999999998775 58877754331 1222100 0001
Q ss_pred C-ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCCCCCcceEEEEeccCCCCCcCCCCC
Q 038499 355 G-TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTSTKRQAILSFNIHSSTINSSLGENT 432 (609)
Q Consensus 355 g-tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~ 432 (609)
| ..+-. .+.+... .....+...++.++++.++.+.|+.+|.+. ++-| ...+.++|.+.. ..
T Consensus 229 G~~~s~~---~a~l~~~--~L~tL~~r~~~~~~na~~~a~~L~~~p~v~~v~yp---g~gg~~sf~~~~-~~-------- 291 (364)
T PRK07269 229 GAVLSPF---DSYLLMR--GLKTLSLRMERSTANAQEVVAFLKKSPAVKEVLYT---GKGGMISFKVAD-ET-------- 291 (364)
T ss_pred CCCCCHH---HHHHHHc--CCCcHHHHHHHHHHHHHHHHHHHHhCCCccEEeCC---CcCcEEEEEECC-HH--------
Confidence 1 11111 1221111 222456677788889999999999999874 4434 356888998854 11
Q ss_pred CCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHH
Q 038499 433 KTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNE 509 (609)
Q Consensus 433 ~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~e 509 (609)
....+...| +.+.+.++-|..++ .|.......+..+.. . -.|+.++.||||++.-
T Consensus 292 --------~~~~f~~~l-~~~~~~~slG~~~sl~~~p~~~~~~~~~~~~r--------~-~~Gi~~~liRlsvGlE---- 349 (364)
T PRK07269 292 --------RIPHILNSL-KVFTFAESLGGVESLITYPTTQTHADIPAEVR--------H-SYGLTDDLLRLSIGIE---- 349 (364)
T ss_pred --------HHHHHHHhC-CcceEccCCCCcCeEeeCCcccccccCCHHHH--------H-hcCCCCCeEEEEeccC----
Confidence 233444555 34555555554332 122111112221110 0 1456789999999964
Q ss_pred HHHHHHHHHHHHH
Q 038499 510 EFEFTLEALEFIA 522 (609)
Q Consensus 510 eid~ll~al~~v~ 522 (609)
+++.+++-|++.+
T Consensus 350 ~~~dli~dl~~al 362 (364)
T PRK07269 350 DARDLIADLKQAL 362 (364)
T ss_pred CHHHHHHHHHHHh
Confidence 4555555555443
|
|
| >PRK08247 cystathionine gamma-synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.6e-19 Score=188.17 Aligned_cols=230 Identities=17% Similarity=0.196 Sum_probs=158.1
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW- 198 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (609)
.....++++.++++.|++. .++ +++|+ +++..++.. +++|| .|+++...|++....+
T Consensus 51 ~pt~~~le~~la~l~g~~~--~~~-~~sG~-~ai~~~~~l----------------l~~Gd--~Vl~~~~~y~~t~~~~~ 108 (366)
T PRK08247 51 NPTRGVLEQAIADLEGGDQ--GFA-CSSGM-AAIQLVMSL----------------FRSGD--ELIVSSDLYGGTYRLFE 108 (366)
T ss_pred CchHHHHHHHHHHHhCCCc--EEE-EcCHH-HHHHHHHHH----------------hCCCC--EEEEecCCcCcHHHHHH
Confidence 3446789999999999964 344 44665 467766543 36888 6888888888754433
Q ss_pred ---HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 199 ---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 199 ---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
+..|++++.++.. |+++++++++ ++++++++++|+||+|.+.|+++|+++||+||+++++|++++.+
T Consensus 109 ~~~~~~G~~v~~vd~~-----d~~~l~~~i~-----~~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~ 178 (366)
T PRK08247 109 EHWKKWNVRFVYVNTA-----SLKAIEQAIT-----PNTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTP 178 (366)
T ss_pred HHhhccCceEEEECCC-----CHHHHHHhcc-----cCceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccc
Confidence 4579999998753 8999999998 68999999999999999999999999999999999999998765
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
.....+. .+.|+++.|++|+++|+.+ .|+++.+ +++ .+.+...... .
T Consensus 179 ~~~~p~~----~g~di~i~S~sK~~~g~~d~~~G~iv~~~~~l--~~~~~~~~~~------------------------~ 228 (366)
T PRK08247 179 VLQRPLE----EGADIVIHSATKYLGGHNDVLAGLVVAKGQEL--CERLAYYQNA------------------------A 228 (366)
T ss_pred cccCchh----cCCcEEEeecceeccCCCceeeeEEecChHHH--HHHHHHHHHh------------------------c
Confidence 4332221 2789999999999998754 5777776 344 1222111000 0
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEE-eCCCCCCCcceEEEEec
Q 038499 353 SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKI-LGNTSTKRQAILSFNIH 420 (609)
Q Consensus 353 ~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v-~~~~~~~r~~~~~f~~~ 420 (609)
.....+..+.+ ++. .....+...++.++.++.+.+.|+++|++.. ..| ...++++|.+.
T Consensus 229 g~~~s~~~a~l--~~~----~l~tl~~r~~~~~~~a~~l~~~L~~~p~v~~v~~P---~~gg~~sf~~~ 288 (366)
T PRK08247 229 GAVLSPFDSWL--LIR----GMKTLALRMRQHEENAKAIAAFLNEQPGVTDVLYP---GRGGMLSFRLQ 288 (366)
T ss_pred CCCCChHHHHH--HHh----ccCcHHHHHHHHHHHHHHHHHHHHhCCCeeEEecC---CcCcEEEEEEC
Confidence 00111111111 100 1112344455668888999999999999874 333 24678888653
|
|
| >TIGR00474 selA seryl-tRNA(sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-18 Score=184.47 Aligned_cols=205 Identities=17% Similarity=0.155 Sum_probs=150.5
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
..+|+++.+.++.++.+.+++.+.+..+ .|.... ...+. ....+..+++.+++++|++. .++| +||+. ++..+
T Consensus 81 g~v~~tNlg~s~l~~~vieAv~~~~~~y-~~l~~~-l~~g~-~g~r~~~le~~lA~l~gae~--alvv-~sg~a-Ai~l~ 153 (454)
T TIGR00474 81 GVVLHTNLGRAPLAEEAIEAVTDAARGY-SNLEYD-LETGK-RGSRYSHVEGLLCELTGAED--ALVV-NNNAA-AVLLA 153 (454)
T ss_pred CcEEeccCCCCCCCHHHHHHHHHHHhcc-cchhcc-ccccc-cchHHHHHHHHHHHHhCCCc--EEEE-CCHHH-HHHHH
Confidence 4688888888899999999998877643 444311 11111 22447889999999999974 4555 47766 56666
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc----hHH--HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS----NLL--SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s----~~~--~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~ 230 (609)
+.. +.+|| +|+++..+|.. +.. .++..|+++++++.+ +..++++++++|+
T Consensus 154 l~~----------------l~~Gd--eVIvs~~e~v~~ggs~~i~~~~~~~G~~~~~v~~~--~~~~l~dle~aI~---- 209 (454)
T TIGR00474 154 LNT----------------LAKGK--EVIVSRGELVEIGGSFRIPDVMEQSGAKLVEVGTT--NRTHLKDYEDAIT---- 209 (454)
T ss_pred HHH----------------hCCcC--EEEECCChhhhhcchhhHHHHHHHcCCEEEEeCCC--CCCCHHHHHHhcC----
Confidence 544 36888 79999887642 222 345679999999764 3458999999998
Q ss_pred CCCceEEEEecccCcc--c--cccCHHHHHHHHHHhCCeEEEecccc---------CCcccccCCCCCCCCccEEEEcCC
Q 038499 231 AKRPILGSFSACSNVT--G--IYSDTRSIARLLHQYGGFACFDFAAS---------GPYVEIDVRSGQTDGYDAIFLSTH 297 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~T--G--~~~dl~~I~~la~~~g~~vivD~A~~---------~~~~~id~~~~~~~~~D~v~~S~h 297 (609)
++|+++++.+++|++ | .+.|+++|+++||+||+++++|.+.+ .++.+.-... ...|+|++++|+|
T Consensus 210 -~~T~lv~~~h~sN~~~~G~~~~~dl~~I~~la~~~g~~vivD~~sG~l~~~~~~gl~~~p~~~~~-~~~GaDiv~fSg~ 287 (454)
T TIGR00474 210 -ENTALLLKVHTSNYRIVGFTEEVSIAELVALGREHGLPVMEDLGSGSLVDLSRYGLPDEPTVQEV-IAAGVDLVTFSGD 287 (454)
T ss_pred -cCCEEEEEEccCcccccCCCCCCCHHHHHHHHHHcCCeEEEECCCcccccchhccCCCCcccccH-hHcCCCEEEecCc
Confidence 689999999999984 6 47899999999999999999997632 1222221111 1238999999999
Q ss_pred CCCCCCCCcEEEEEechh
Q 038499 298 KFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 298 K~lggp~g~G~L~~~~~~ 315 (609)
||+|||. .|++++++++
T Consensus 288 K~LgGp~-~G~i~g~~~~ 304 (454)
T TIGR00474 288 KLLGGPQ-AGIIVGKKEL 304 (454)
T ss_pred cccCCCe-EEEEEECHHH
Confidence 9999997 6999999988
|
In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on. |
| >PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.7e-19 Score=187.42 Aligned_cols=336 Identities=15% Similarity=0.110 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH---
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS--- 197 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--- 197 (609)
....++++.++++.|+.. .++ ++||+. |+..++..+ +++|| +|++++..|.+....
T Consensus 61 Ptv~~lE~~la~leg~~~--av~-~~SG~a-Ai~~al~al---------------l~~GD--~VI~~~~~Y~~T~~~~~~ 119 (432)
T PRK06702 61 PTLAAFEQKLAELEGGVG--AVA-TASGQA-AIMLAVLNI---------------CSSGD--HLLCSSTVYGGTFNLFGV 119 (432)
T ss_pred cHHHHHHHHHHHHhCCCc--EEE-ECCHHH-HHHHHHHHh---------------cCCCC--EEEECCCchHHHHHHHHH
Confidence 346788999999999863 344 546666 677666554 47999 799999999866554
Q ss_pred -HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 198 -WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 198 -~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
....|++++++.. .+|+++++++|+ ++||+|++.+++||++.+.|+++|+++||+||+++++|++.+.|+
T Consensus 120 ~l~~~Gi~v~~vd~----~~d~~~l~~~I~-----~~Tk~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~ 190 (432)
T PRK06702 120 SLRKLGIDVTFFNP----NLTADEIVALAN-----DKTKLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPY 190 (432)
T ss_pred HHHHCCCEEEEECC----CCCHHHHHHhCC-----cCCeEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchh
Confidence 5678999999964 368999999998 689999999999999999999999999999999999999987553
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccC--C--CceEeecccccccccccc--cc
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCG--G--GTVNYVNGFNEKDTLYLE--DI 348 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~g--g--g~v~~~~~~~~~~~~~~~--~~ 348 (609)
. .+++ ..|+|+++.|.+|+++|..+ .|+++.....-......+...- . ..+.+.. +.....++. ..
T Consensus 191 ~---~~pl-~~GADIvv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 264 (432)
T PRK06702 191 L---CQAF-EHGANIIVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQ--NFGAAAYIVKARV 264 (432)
T ss_pred h---CChh-hcCCCEEEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhh--ccchhhHHHHHHH
Confidence 3 2221 12899999999999999864 4555434332000000000000 0 0000000 000000000 00
Q ss_pred cccccCCC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C------------CCCc
Q 038499 349 EERESGGT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S------------TKRQ 412 (609)
Q Consensus 349 ~~r~~~gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~------------~~r~ 412 (609)
......|+ .+.. .+.+... .....+.+.++..+++..+.+.|+++|.++ |.-|. + ....
T Consensus 265 ~~~~~~g~~~sp~---~a~l~~r--gL~Tl~lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~g 339 (432)
T PRK06702 265 QLLRDYGNCMSPF---NAYISNI--GLETLHLRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGAS 339 (432)
T ss_pred HHHHHccCCCCHH---HHHHHHh--ccCcHHHHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCc
Confidence 00111122 1111 1111111 122356666777889999999999998875 43332 1 0134
Q ss_pred ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhC
Q 038499 413 AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKG 489 (609)
Q Consensus 413 ~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~ 489 (609)
++++|.+.. +. -....+++.| +.+.+.+.-|..-+ .|.......+..+...
T Consensus 340 g~~sf~l~~-~~---------------~~~~~f~~~l-~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~--------- 393 (432)
T PRK06702 340 GVLTFGIKG-GL---------------EAAKEFIANV-KLATLVTHVADARTCVIHPASTTHRQLSAEDQR--------- 393 (432)
T ss_pred eEEEEEecC-CH---------------HHHHHHHHhC-ccceeccccCCCCcceECCCCCCcccCCHHHHH---------
Confidence 688888864 21 1234555656 56666666664211 1322222223322211
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 490 ~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
..|+.++.||||++. |+.+.+++-|+..++.+..
T Consensus 394 ~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~Al~~~~~ 427 (432)
T PRK06702 394 LAGVTSDLIRLSVGI----EDVSDIIADLEAALVGGKQ 427 (432)
T ss_pred hcCCCCCeEEEEecc----CCHHHHHHHHHHHHhcCcc
Confidence 246678999999995 5677778888877776653
|
|
| >PRK05664 threonine-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.84 E-value=9e-19 Score=183.59 Aligned_cols=273 Identities=17% Similarity=0.120 Sum_probs=182.1
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc
Q 038499 124 HEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA 203 (609)
Q Consensus 124 ~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (609)
.++|+.|++++|. ++|++| +|++++|..++. +.+|| .|++..+.|+.+...++..|+
T Consensus 52 ~~Lr~~ia~~~~~---~~I~it-~Gs~~al~~~~~-----------------~~~gd--~v~v~~P~y~~~~~~~~~~g~ 108 (330)
T PRK05664 52 DGLEAAARAYYGA---PQLLPV-AGSQAAIQALPR-----------------LRAPG--RVGVLSPCYAEHAHAWRRAGH 108 (330)
T ss_pred HHHHHHHHHHhCC---CCEEEC-cCHHHHHHHHHH-----------------ccCCC--EEEEcCCChHHHHHHHHHcCC
Confidence 4678999999986 378887 899999987742 25788 699999999999999999999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHH---HHHHHHHhCCeEEEeccccCCccccc
Q 038499 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRS---IARLLHQYGGFACFDFAASGPYVEID 280 (609)
Q Consensus 204 ~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~---I~~la~~~g~~vivD~A~~~~~~~id 280 (609)
+++.|+.+ ++++++. +++++++++|+||||.+.+.++ |+++|+++|+++|+|+++........
T Consensus 109 ~~~~v~~~--------~~~~~~~------~~~~v~l~nP~NPTG~~~s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s 174 (330)
T PRK05664 109 QVRELDEA--------EVEAALD------SLDVLVVVNPNNPTGRRFDPARLLAWHARLAARGGWLVVDEAFMDNTPQHS 174 (330)
T ss_pred eEEEechh--------hHhhhhc------CCCEEEEeCCcCCCCCccCHHHHHHHHHHHHhcCCEEEEECCcccCCCccc
Confidence 99999753 4555554 5778899999999999998654 56667889999999999753321112
Q ss_pred CCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhH
Q 038499 281 VRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV 359 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i 359 (609)
+..+....--+++.|++|.+|.| ..+|++++++++ ++.+.... ...+....
T Consensus 175 ~~~~~~~~~vi~~~SfSK~~gl~GlRiG~~v~~~~l--~~~~~~~~--------------------------~~~~~~~~ 226 (330)
T PRK05664 175 LAACAHRPGLIVLRSFGKFFGLAGARLGFVLAEPAL--LRALAELL--------------------------GPWTVSGP 226 (330)
T ss_pred ccccccCCCEEEEeeccccccCCCcceEEEEeCHHH--HHHHHHhc--------------------------CCCCCCHH
Confidence 22221112237788999999845 469999999887 33321110 00011112
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCC
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP 439 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
.+. ++ ...+.+....+.++++..+.++++.+.|+++ +++..+ ...++.+...+
T Consensus 227 ~~~--~~-~~~L~~~~~~~~~~~~~~~~r~~l~~~L~~~-~~~~~~-----~~~~f~~~~~~------------------ 279 (330)
T PRK05664 227 TRW--LA-QAALADTPWQRRQRERLLAASQRLAALLRRH-GLTPAG-----GCALFQWVRTE------------------ 279 (330)
T ss_pred HHH--HH-HHHHhChHHHHHHHHHHHHHHHHHHHHHHHC-CCcccC-----CcceEEEEecC------------------
Confidence 221 11 1122222223456677777788888888876 443211 12233333222
Q ss_pred CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 440 LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 440 l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
+..++.+.|.+ .||.++. |. .++++||+++. +.+++++++++|+
T Consensus 280 -~~~~~~~~l~~-~gi~v~~---f~-----------------------------~~~~iRis~~~--~~~~~~~l~~al~ 323 (330)
T PRK05664 280 -DAAALHEFLAR-RGILTRL---FE-----------------------------QPASLRFGLPA--DEADWARLDQALL 323 (330)
T ss_pred -CHHHHHHHHHH-CCeEEEE---CC-----------------------------CCCeEEEECCC--CHHHHHHHHHHHH
Confidence 35678888855 6999972 21 14799999974 6889999999999
Q ss_pred HHHHh
Q 038499 520 FIAIY 524 (609)
Q Consensus 520 ~v~~~ 524 (609)
.+.++
T Consensus 324 ~~~~~ 328 (330)
T PRK05664 324 AYRKE 328 (330)
T ss_pred HHHhh
Confidence 88655
|
|
| >PRK12462 phosphoserine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.4e-18 Score=179.37 Aligned_cols=338 Identities=14% Similarity=0.109 Sum_probs=227.5
Q ss_pred CCChHHHHHHHHHhhcCCccC--CCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 87 GRSLRYIENYIINNVLPFYGN--THTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n--~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
+..|+.|++++++.+..+.+. .-.+.++.+..+.+++.++++.++++++.+.+.+|+|..+|+|.++.++..-+
T Consensus 13 a~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nl---- 88 (364)
T PRK12462 13 GALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNF---- 88 (364)
T ss_pred cCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHc----
Confidence 346889999999888765321 11123556778899999999999999999765578777677887888776654
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCC----CCCCCHHHHHHHHhhhccCCCceEEE
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDD----DGLLDIEALRSKLELYKDAKRPILGS 238 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~----~g~ld~e~L~~al~~~~~~~~~~lv~ 238 (609)
+.+|++..-++. ..+.+.. .-++..| ++..+.... ...++++++ .+. ++.+.+.
T Consensus 89 -----------l~~g~~~~~~~~-tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~--~~~-----~d~~~v~ 148 (364)
T PRK12462 89 -----------SRPGAAAPEYVT-TGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAEL--DWD-----ARAPFRH 148 (364)
T ss_pred -----------CCCCCcEEEEEe-CCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHh--ccC-----CCCcEEE
Confidence 467875220222 2222222 2233455 555553211 234556654 222 3577899
Q ss_pred EecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhcc
Q 038499 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQL 318 (609)
Q Consensus 239 ~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l 318 (609)
+++..+.||+..| ++.+.+++++++|.+.+++..++|+.++ |+++++.+|.+| |.|++++++++++ +
T Consensus 149 ~t~NETstGv~~~-----~~~~~~~~llvvD~sS~~~s~pid~~~~-----dvi~agsQKnlg-P~Gltvvivs~~a--l 215 (364)
T PRK12462 149 YVSNETVEGLQFP-----DAAGLPDSPLIADMSSDFMSRPFDVEAY-----GMVYAHAQKNLG-PAGVTVAIIRRAL--L 215 (364)
T ss_pred EccCCCCceEecC-----cccccCCCeEEEEcCchhhCCCCChHHc-----cEEEeeccccCC-CCceEEEEECHHH--H
Confidence 9999999999987 3333469999999999999999999864 999999999998 9899999999999 5
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH--HHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHh
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR--AALAFWVKEY-IGHEVIKKQEETYIERALERL 395 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~--aal~~~~~~~-~g~~~i~~~~~~l~~~~~~~L 395 (609)
++..+..+ .. ..|...........||++..+.. .++.+.. ++ .|++.+.++.++.++.+++.+
T Consensus 216 ~~~~~~~p--~~-----------ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~-~e~GGl~~~~~r~~~ka~~ly~~i 281 (364)
T PRK12462 216 ERVPDTLP--PM-----------LDFRTHVEHRSNYNTPPVFAIYVMALVLRWIR-DEIGGVHAMRDINARKAAMLYATL 281 (364)
T ss_pred hhccccCC--ch-----------hhHHHHHhcCCCCCCchHHHHHHHHHHHHHHH-HhccCHHHHHHHHHHHHHHHHHHH
Confidence 55433211 01 01111112223345888877654 4444443 34 399999999999999999999
Q ss_pred CCCCceEEeCCC-CCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC
Q 038499 396 LPNQNIKILGNT-STKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL 474 (609)
Q Consensus 396 ~~~p~i~v~~~~-~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i 474 (609)
.+.+++....-. +..+.-+++|.+.+ .. + ...+.+.+ ++.|+.--.| |+.
T Consensus 282 d~~~~~~~~~~~~~~RS~mnv~f~~~~-~~---------------l-~~~f~~~a-~~~gl~~lkG--------hr~--- 332 (364)
T PRK12462 282 DALNEVIDCHAHRAARSTMNVAFRFRQ-PR---------------L-DTLFKEQS-TEAGFCGLSG--------HRS--- 332 (364)
T ss_pred HhCCCcccCCCChhhcCcceEEEEcCC-HH---------------H-HHHHHHHH-HHCCCccccC--------Ccc---
Confidence 998766543322 22344567777655 21 2 34555555 3458765432 321
Q ss_pred ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 475 DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
-|.+|+|+-..++.|+++.|++.+++..++
T Consensus 333 --------------------vgg~Ras~yna~~~e~v~~L~~fm~~f~~~ 362 (364)
T PRK12462 333 --------------------IGGIRASLYNAVSEQAVSRLCAFLKDFAIR 362 (364)
T ss_pred --------------------cCceEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 367999999899999999999999987654
|
|
| >PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.3e-18 Score=186.21 Aligned_cols=349 Identities=14% Similarity=0.033 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL 202 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (609)
..++++.+++++|.+ .+++++|||.+ +..++.++.... + ....+++|| .|++++++|+++..++...|
T Consensus 65 ~~~fe~~lA~~~g~~---~~v~~~sGt~a-l~~aL~al~~~~---~---~~~~~~pGd--~VIv~~~t~~a~~~~v~~~G 132 (438)
T PRK15407 65 NDAFEKKLAEFLGVR---YALLVNSGSSA-NLLAFSALTSPK---L---GDRALKPGD--EVITVAAGFPTTVNPIIQNG 132 (438)
T ss_pred HHHHHHHHHHHhCCC---eEEEECCHHHH-HHHHHHHHhhcc---c---cccCCCCCC--EEEECCCCcHHHHHHHHHcC
Confidence 668899999999985 57777566664 555544431000 0 000157888 79999999999999999999
Q ss_pred ceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccC
Q 038499 203 AEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDV 281 (609)
Q Consensus 203 ~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~ 281 (609)
++++.++++. ++.+|+++++++++ +++++|++++ ++|...|+++|.++|++||+++|+|++|+.|...-+.
T Consensus 133 ~~pv~vdvd~~~~~id~~~le~~i~-----~~tkaVi~~~---~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~ 204 (438)
T PRK15407 133 LVPVFVDVELPTYNIDASLLEAAVS-----PKTKAIMIAH---TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGR 204 (438)
T ss_pred CEEEEEecCCCcCCcCHHHHHHHcC-----cCCeEEEEeC---CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCe
Confidence 9999999874 67899999999997 6899988887 4788899999999999999999999999988665432
Q ss_pred CCCCCCCccEEEEcCC--CCCCCCCCcEEEEEechhhccCCCCCCccCCCceE---ee-c-----cccc---cccccccc
Q 038499 282 RSGQTDGYDAIFLSTH--KFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVN---YV-N-----GFNE---KDTLYLED 347 (609)
Q Consensus 282 ~~~~~~~~D~v~~S~h--K~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~---~~-~-----~~~~---~~~~~~~~ 347 (609)
..+ ..| |+.++|+| |-+....| |+++++++.. ..........|... .. . .+.. .....++.
T Consensus 205 ~~G-~~g-d~~~fSf~~~k~~~~geG-G~l~t~d~~l--~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (438)
T PRK15407 205 MTG-TFG-DIATLSFYPAHHITMGEG-GAVFTNDPLL--KKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDH 279 (438)
T ss_pred eee-ccC-ceEEEeCCCCCCccccCc-eEEEECCHHH--HHHHHHHHHhCcccccccccccccccccccccccccccccc
Confidence 221 113 77777766 65654444 9999987662 21111111111100 00 0 0000 00000000
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEe-CCCCCCCcceEEEEeccCCCCC
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKIL-GNTSTKRQAILSFNIHSSTINS 426 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~-~~~~~~r~~~~~f~~~~~~~~~ 426 (609)
.-.-...|...-+.-+.|++... +....+.+.++.+++++++.+.|+.++++.++ .........++.|.+.- .
T Consensus 280 ~~~~~~~G~n~rmsel~AAig~~--qL~~l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~-~--- 353 (438)
T PRK15407 280 KYTYSHLGYNLKITDMQAAIGLA--QLEKLPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITV-K--- 353 (438)
T ss_pred cccccccccccCccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEE-C---
Confidence 00000123221122223333322 22346778888889999999999988753322 21111122333333332 1
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcc--cC-Chhhhhh--c-CCChhHHHHHHHHHhhCCCCCCCcEEEE
Q 038499 427 SLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCA--CA-GPYGHHL--L-DLDEAQSYQIRSAIQKGYVGVKPGWTRI 500 (609)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~--ca-~p~~~~l--l-~i~~~~~~~~~~~~~~~~~~~~~g~iRl 500 (609)
.....+.+++.+.|.+ .||.++.... |. .|+-... . .-+.+.++.+ ....+-+
T Consensus 354 ---------~~~~~~Rd~l~~~L~~-~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~-----------~~~~l~L 412 (438)
T PRK15407 354 ---------EDAGFTRVELVKYLEE-NKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRI-----------MNDTFWI 412 (438)
T ss_pred ---------CcCCCCHHHHHHHHHH-CCCCccccCCCccccChhhhhcCCCCCCCChHHHHH-----------HhCeEEe
Confidence 0112457899999976 5998875321 11 1111100 0 1122333333 2467888
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHH
Q 038499 501 SFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 501 s~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++..+|++|+++++++|++++.
T Consensus 413 P~~~~l~~~~v~~i~~~i~~~~~ 435 (438)
T PRK15407 413 GVYPGLTEEMLDYVIEKIEEFFG 435 (438)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh
Confidence 89999999999999999999874
|
|
| >PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=9e-18 Score=180.87 Aligned_cols=342 Identities=15% Similarity=0.147 Sum_probs=205.3
Q ss_pred CccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 038499 66 NAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE 139 (609)
Q Consensus 66 ~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~ 139 (609)
+.++.+..|+ -|+|..++ |-..+.|.+++.+.+... . +.... -......++.+.+++++|.+
T Consensus 32 G~~~~d~~g~---~~lD~~~~~~~~~~Gh~~~~i~~a~~~~~~~~-~--~~~~~----~~~~~~~~l~~~l~~~~~~~-- 99 (401)
T PRK00854 32 GVWVWDTDGN---RYLDCLSAYSAVNQGHCHPKILAAMVEQAGRL-T--LTSRA----FRNDQLAPLYEELAALTGSH-- 99 (401)
T ss_pred eCEEEECCCC---EEEEcCcchhhccCCCCCHHHHHHHHHHHhhc-c--ccccc----cCCHHHHHHHHHHHhhCCCC--
Confidence 4445444553 37775332 344788999998888653 1 11100 11345678889999998863
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC-------------ceEE
Q 038499 140 DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL-------------AEVV 206 (609)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv 206 (609)
.++|+.||+.+ +..++.++-.. . . . ....++|.. .|++....||+........+ ..+.
T Consensus 100 -~~~~~~SGs~A-~e~al~~a~~~-~---~-~-~~g~~~~~~-~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (401)
T PRK00854 100 -KVLPMNSGAEA-VETAIKAVRKW-G---Y-E-VKGVPEGQA-EIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFR 170 (401)
T ss_pred -EEEEeCCcHHH-HHHHHHHHHHH-H---H-h-ccCCCCCCc-eEEEECCCcCCccHHHHhccCCccccccCCCCCCCeE
Confidence 68888788886 33333332100 0 0 0 000123322 45555555554332222111 2334
Q ss_pred EEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc-CCcccccC
Q 038499 207 EIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVEIDV 281 (609)
Q Consensus 207 ~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~-~~~~~id~ 281 (609)
.++. .|+++|++++. +++++|++++++|++|.+.| +++|.++|++||+++|+|++++ .+.....+
T Consensus 171 ~~~~-----~d~~~le~~i~-----~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~gi~lI~DEv~~g~g~~g~~~ 240 (401)
T PRK00854 171 VVPF-----GDAEALEAAIT-----PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKLL 240 (401)
T ss_pred EeCC-----CCHHHHHHHhC-----CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCchHh
Confidence 4432 38999999997 68999999999999999987 9999999999999999999987 44332111
Q ss_pred --CCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 282 --RSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 282 --~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
... .-..|+++++ |+++|.. .+|+++.++++ ++.+.+...+ . ...+.|.
T Consensus 241 ~~~~~-g~~~D~~~~~--K~l~gg~~~ig~v~~~~~~--~~~l~~~~~~-~----------------------t~~~~~~ 292 (401)
T PRK00854 241 AEEHE-GIEADVTLIG--KALSGGFYPVSAVLSNSEV--LGVLKPGQHG-S----------------------TFGGNPL 292 (401)
T ss_pred HHhhc-CCCCCEEEec--ccccCCccCeEEEEEcHHH--HhcccCCCCC-C----------------------CCCcCHH
Confidence 111 0145888875 9997653 47999999888 4444321100 0 0022333
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK 438 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (609)
......+++... +. +.+.++.+++.+++.+.|+++.. ...... .....++.+.+.+ +.
T Consensus 293 ~~aa~~a~L~~l--~~---~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~-~g~g~~~~i~~~~-~~-------------- 350 (401)
T PRK00854 293 ACAVARAALKVL--TE---EGMIENAAEMGAYFLEGLRSIRS-NIVREV-RGRGLMLAVELEP-EA-------------- 350 (401)
T ss_pred HHHHHHHHHHHH--HH---cCHHHHHHHHHHHHHHHHHhhcc-CceEEE-eccceEEEEEEec-Cc--------------
Confidence 333334444432 21 23556777788888888877532 211110 1233445554433 11
Q ss_pred CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 439 PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 439 ~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
.....+++.|.+ .||.+.+. .++++|+++++.++++|+++++++|
T Consensus 351 -~~~~~~~~~L~~-~GV~v~~~---------------------------------~~~~lR~~p~~~~t~e~i~~~i~~l 395 (401)
T PRK00854 351 -GGARQYCEALKE-RGLLAKDT---------------------------------HDHTIRLAPPLVITREQVDWALEQI 395 (401)
T ss_pred -hhHHHHHHHHHH-CCeEEecC---------------------------------CCCEEEEeCCcccCHHHHHHHHHHH
Confidence 245678888876 59988621 1378999999999999999999999
Q ss_pred HHHHH
Q 038499 519 EFIAI 523 (609)
Q Consensus 519 ~~v~~ 523 (609)
++++.
T Consensus 396 ~~~l~ 400 (401)
T PRK00854 396 AKVLA 400 (401)
T ss_pred HHHhh
Confidence 98764
|
|
| >cd00610 OAT_like Acetyl ornithine aminotransferase family | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.1e-18 Score=183.45 Aligned_cols=349 Identities=17% Similarity=0.162 Sum_probs=207.5
Q ss_pred ccccCCCCCCceEEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 038499 67 AEFDSPFGKRRLTYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQED 140 (609)
Q Consensus 67 ~~~~~p~g~~~~vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~ 140 (609)
.++....|+ -|+|..+ .|-.++.|.+++.+.+... + + +..+........++++.+++++|.+.+
T Consensus 28 ~~~~d~dG~---~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~--~-~---~~~~~~~~~~~~~l~~~l~~~~~~~~~- 97 (413)
T cd00610 28 AYLYDVDGN---RYLDFLSGIGVLNLGHNHPEVVEALKEQLAKL--T-H---FSLGFFYNEPAVELAELLLALTPEGLD- 97 (413)
T ss_pred CEEEeCCCC---EEEEcCccHHhhccCCCCHHHHHHHHHHHHhC--c-C---ccCcccCCHHHHHHHHHHHHhCCCCCC-
Confidence 334444453 3777654 3446788999998887432 1 1 111112356678899999999997555
Q ss_pred cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHcC------------ceEEE
Q 038499 141 AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQSL------------AEVVE 207 (609)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G------------~~vv~ 207 (609)
.++|+.+|+. ++..++.++. .+.+++ .|++....||+. .......+ .+++.
T Consensus 98 ~v~~~~sgse-a~~~al~~~~-------------~~~~~~--~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (413)
T cd00610 98 KVFFVNSGTE-AVEAALKLAR-------------AYTGRK--KIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLH 161 (413)
T ss_pred EEEEcCcHHH-HHHHHHHHHH-------------HHcCCC--eEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEE
Confidence 8999855555 5655555431 023455 455555555554 33333222 24666
Q ss_pred EecCC------CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCC-c
Q 038499 208 IGLDD------DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP-Y 276 (609)
Q Consensus 208 v~~~~------~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~-~ 276 (609)
++.+. +...|+++|++.++++ .+++++++++..++++|.+.| +++|.++|++||+++++|++++.. .
T Consensus 162 ~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~ 239 (413)
T cd00610 162 VPYPYRYRPPAELADDLEALEEALEEH--PEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGR 239 (413)
T ss_pred eCCCccccchhhHHHHHHHHHHHHhcC--CCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 76653 2334889999998742 136778888888889999987 899999999999999999998742 1
Q ss_pred cc--ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC--CCCccCCCceEeecccccccccccccccccc
Q 038499 277 VE--IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF--PPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 277 ~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~--~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
.. ....... ...|++++ +|+++++..+|+++.++++ ++.+ ..... ..
T Consensus 240 ~g~~~~~~~~~-~~~d~~t~--sK~l~~g~~~g~~~~~~~~--~~~~~~~~~~~------------------------~~ 290 (413)
T cd00610 240 TGKMFAFEHFG-VEPDIVTL--GKGLGGGLPLGAVLGREEI--MDAFPAGPGLH------------------------GG 290 (413)
T ss_pred CcchhhHhhcC-CCCCeEEE--cccccCccccEEEEEcHHH--HHhhccCCCCC------------------------CC
Confidence 11 1111110 13476654 5999976678999999887 3333 11100 00
Q ss_pred c-CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce-EEeCCCCCCCcceEEEEeccCCCCCcCCC
Q 038499 353 S-GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI-KILGNTSTKRQAILSFNIHSSTINSSLGE 430 (609)
Q Consensus 353 ~-~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i-~v~~~~~~~r~~~~~f~~~~~~~~~~~~~ 430 (609)
. .+.+.....+.++++++ +. +.+.++.+++.+++.+.|+.+... .+.... ....+++++.+.. ....
T Consensus 291 t~~~~~~~~~a~~a~l~~l--~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~-~~~~---- 359 (413)
T cd00610 291 TFGGNPLACAAALAVLEVL--EE---EGLLENAAELGEYLRERLRELAEKHPLVGDV-RGRGLMIGIELVK-DRAT---- 359 (413)
T ss_pred CCCcCHHHHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHHHHhhCCcEEEe-ecCceEEEEEEec-CCCc----
Confidence 1 12222222233444443 21 345567777777777777654210 111110 1244666666644 1000
Q ss_pred CCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHH
Q 038499 431 NTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEE 510 (609)
Q Consensus 431 ~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ee 510 (609)
+ .........+.+.|.+ .||.+.++. ++.+|+++++.+|++|
T Consensus 360 ---~-~~~~~~~~~~~~~l~~-~gv~v~~~~---------------------------------~~~lR~~~~~~~t~~~ 401 (413)
T cd00610 360 ---K-PPDKELAAKIIKAALE-RGLLLRPSG---------------------------------GNVIRLLPPLIITEEE 401 (413)
T ss_pred ---C-CcchHHHHHHHHHHHH-CCeEEeecC---------------------------------CCEEEEECCCcCCHHH
Confidence 0 0000234667788866 599988542 2679999999999999
Q ss_pred HHHHHHHHHHH
Q 038499 511 FEFTLEALEFI 521 (609)
Q Consensus 511 id~ll~al~~v 521 (609)
+++++++|+.+
T Consensus 402 i~~~~~~l~~~ 412 (413)
T cd00610 402 IDEGLDALDEA 412 (413)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. |
| >PRK03244 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-17 Score=179.80 Aligned_cols=337 Identities=16% Similarity=0.156 Sum_probs=205.0
Q ss_pred CCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCC
Q 038499 65 KNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQ 138 (609)
Q Consensus 65 ~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~ 138 (609)
.+.++.+..|+ -|+|..++ |+.++.+.+++.+.+... +.... .+ ......++.++++++++.+.
T Consensus 33 ~G~~~~d~dg~---~~lD~~s~~~~~~lG~~~p~v~~ai~~~~~~~-~~~~~-~~-----~~~~~~~la~~l~~~~~~~~ 102 (398)
T PRK03244 33 EGAVVWDVDGK---EYLDLLGGIAVNALGHAHPAVVEAVTRQLATL-GHVSN-LF-----ATEPQIALAERLVELLGAPE 102 (398)
T ss_pred eecEEEECCCC---EEEECCcCHhhccCCCCCHHHHHHHHHHHHhc-cCccC-cc-----CCHHHHHHHHHHHHhCCCCC
Confidence 34455555554 37887653 555788999998887653 11111 11 11223578889999988543
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcCc------------eE
Q 038499 139 EDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSLA------------EV 205 (609)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G~------------~v 205 (609)
.++++|+.+|+. ++..++++.. .+|+..+|.+.+ .||... ......|. ++
T Consensus 103 ~~~v~~~~sgse-a~~~al~~~~---------------~~g~~~ii~~~~-~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (398)
T PRK03244 103 GGRVFFCNSGAE-ANEAAFKLAR---------------LTGRTKIVAAEG-GFHGRTMGALALTGQPAKRAPFEPLPGGV 165 (398)
T ss_pred CCEEEEeCchHH-HHHHHHHHHH---------------HHCCCeEEEECC-CcCCccHHHHhccCCcccccCCCCCCCCc
Confidence 238999855555 5666655432 244332455545 555443 32322222 23
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Cccc--
Q 038499 206 VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVE-- 278 (609)
Q Consensus 206 v~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~-- 278 (609)
..++. .|+++|++++. +++++++++.++|++|.+.| +++|.++|++||+++|+|++++. +...
T Consensus 166 ~~~~~-----~d~~~l~~~~~-----~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~ 235 (398)
T PRK03244 166 EHVPY-----GDVDALAAAVD-----DDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRTGAW 235 (398)
T ss_pred eEeCC-----CCHHHHHHhhc-----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCcccchH
Confidence 33332 37899999886 57899999999999999988 88999999999999999999763 2111
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
+.+... .-..|++++ +|++++...+|++++++++ .+.+.+...+ ..+ .+.|.
T Consensus 236 ~~~~~~-~~~pDi~t~--sK~l~~G~~ig~~~~~~~~--~~~~~~~~~~----------------------~t~-~~~~~ 287 (398)
T PRK03244 236 FAHQHD-GVTPDVVTL--AKGLGGGLPIGACLAFGPA--ADLLTPGLHG----------------------STF-GGNPV 287 (398)
T ss_pred Hhhhhh-CCCCCEEEE--chhhhCCcccEEEEEcHHH--HhhccCCCCc----------------------CCC-CCCHH
Confidence 111111 113577655 5999866668999999887 3433221100 000 12232
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK 438 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (609)
....+.+.+..+ ..+.+.++.+++.+++++.|+++ +..+.... .....++.+.+..
T Consensus 288 ~~aaa~a~l~~~-----~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~v-~g~g~~~~i~~~~----------------- 343 (398)
T PRK03244 288 ACAAALAVLDTI-----ASEGLLENAERLGEQLRAGIEAL-GHPLVDHV-RGRGLLLGIVLTA----------------- 343 (398)
T ss_pred HHHHHHHHHHHH-----HhccHHHHHHHHHHHHHHHHHhc-CCCceeeE-eeccEEEEEEEec-----------------
Confidence 222223333322 22345677788888899988875 22111110 0123344444432
Q ss_pred CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 439 PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 439 ~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
-....+.+.|.+ .||.+++. .++.+|++++..+|++|+++++++|
T Consensus 344 -~~~~~~~~~l~~-~Gv~~~~~---------------------------------~~~~iR~~p~~~~t~~~i~~~~~~l 388 (398)
T PRK03244 344 -PVAKAVEAAARE-AGFLVNAV---------------------------------APDVIRLAPPLIITDAQVDAFVAAL 388 (398)
T ss_pred -cHHHHHHHHHHH-CCeEEeec---------------------------------CCCEEEEECCCcCCHHHHHHHHHHH
Confidence 135677788866 59998741 1368999999999999999999999
Q ss_pred HHHHHhc
Q 038499 519 EFIAIYG 525 (609)
Q Consensus 519 ~~v~~~~ 525 (609)
++++.+.
T Consensus 389 ~~~l~~~ 395 (398)
T PRK03244 389 PAILDAA 395 (398)
T ss_pred HHHHHhc
Confidence 9988653
|
|
| >PRK08354 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-17 Score=174.07 Aligned_cols=184 Identities=14% Similarity=0.054 Sum_probs=134.0
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
.++.++.+.+...|+.+.+++.+.+.. .+. + . ....+++++++.+|. +|++| +|+++++..+
T Consensus 9 ~~i~l~~~~np~~p~~~~~a~~~~~~~----~~~--y-p------~~~~l~~~ia~~~~~----~I~vt-~G~~~al~~~ 70 (311)
T PRK08354 9 GLIDFSASVNPYPPEWLDEMFERAKEI----SGR--Y-T------YYEWLEEEFSKLFGE----PIVIT-AGITEALYLI 70 (311)
T ss_pred ceeEecCCCCCCCCHHHHHHHHHHHHH----hhc--C-C------ChHHHHHHHHHHHCC----CEEEC-CCHHHHHHHH
Confidence 466777665555567788888765431 111 1 1 124578899999983 68887 8999999877
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceE
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPIL 236 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~l 236 (609)
+..+ .+|| .|+++.+.|+.+...++..|++++.++ +|++.|+++++ ++++
T Consensus 71 ~~~~----------------~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~~~------~d~~~l~~~~~------~~~~ 120 (311)
T PRK08354 71 GILA----------------LRDR--KVIIPRHTYGEYERVARFFAARIIKGP------NDPEKLEELVE------RNSV 120 (311)
T ss_pred HHhh----------------CCCC--eEEEeCCCcHHHHHHHHHcCCEEeecC------CCHHHHHHhhc------CCCE
Confidence 6543 4788 699999999999999999999998764 57889988775 3678
Q ss_pred EEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEE
Q 038499 237 GSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLM 311 (609)
Q Consensus 237 v~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~ 311 (609)
+++++|+||||.+.+. ++|+++|++||+++|+|+++......- ... .....+++.|++|.+|-| ..+|++++
T Consensus 121 vi~~~P~NPTG~~~~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~--~~~-~~~~vi~~~S~SK~~~l~GlRiG~~v~ 196 (311)
T PRK08354 121 VFFCNPNNPDGKFYNFKELKPLLDAVEDRNALLILDEAFIDFVKKP--ESP-EGENIIKLRTFTKSYGLPGIRVGYVKG 196 (311)
T ss_pred EEEecCCCCCCCccCHHHHHHHHHHhhhcCcEEEEeCcchhccccc--ccc-CCCcEEEEeccHhhcCCccceeeeeee
Confidence 8999999999999885 556777889999999999975321110 011 013357888999999844 35899998
|
|
| >TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-18 Score=184.16 Aligned_cols=159 Identities=19% Similarity=0.186 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH--
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW-- 198 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (609)
....++++.++++.|.+ ..+++++|+. ++..++..+ +++|| .|+++...|++....+
T Consensus 57 p~~~~le~~lA~l~g~~---~~v~~~sG~~-Ai~~al~~l---------------~~~Gd--~Vl~~~~~y~~t~~~~~~ 115 (418)
T TIGR01326 57 PTTDVLEQRIAALEGGV---AALAVASGQA-AITYAILNL---------------AQAGD--NIVSSSYLYGGTYNLFKH 115 (418)
T ss_pred hhHHHHHHHHHHHhCCC---eEEEEccHHH-HHHHHHHHH---------------hCCCC--EEEEECCCcHHHHHHHHH
Confidence 44678999999999974 3466657776 455555444 37888 6888888887665443
Q ss_pred --HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 199 --RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 199 --~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
...|++++.++.+ |+++++++++ ++++++++++++||||.+.|+++|+++||+||+++|+|++++.+.
T Consensus 116 ~~~~~G~~v~~v~~~-----d~~~l~~~l~-----~~t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~ 185 (418)
T TIGR01326 116 TLKRLGIEVRFVDPD-----DPEEFEKAID-----ENTKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPY 185 (418)
T ss_pred HHHHcCcEEEEECCC-----CHHHHHHhcC-----cCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhh
Confidence 4579999999853 8999999997 689999999999999999999999999999999999999988664
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC-cEEEEEech
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS-PGILLMTKA 314 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~L~~~~~ 314 (609)
....+ . .++|+++.|++|+++|++. +|++++++.
T Consensus 186 ~~~~l-~---~g~Divv~S~sK~l~g~G~~lGg~v~~~~ 220 (418)
T TIGR01326 186 LCRPI-D---HGADIVVHSATKYIGGHGTAIGGVIVDGG 220 (418)
T ss_pred cCCch-h---cCCeEEEECccccccCCccceEEEEEecc
Confidence 32222 1 2689999999999997643 788888653
|
This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities. |
| >PRK07050 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=185.28 Aligned_cols=161 Identities=16% Similarity=0.059 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-
Q 038499 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS- 197 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~- 197 (609)
.....+++++.++++.|.+ +++++ +|+++++..++.++ +++|| +|+++++.|..+...
T Consensus 63 ~~pt~~~Le~~lA~l~g~~---~~l~~-~sgt~Ai~~~l~al---------------~~~GD--~Vl~~~~~y~~~~~~~ 121 (394)
T PRK07050 63 ATPTSLALAQRLAEIEGGR---HALLQ-PSGLAAISLVYFGL---------------VKAGD--DVLIPDNAYGPNRDHG 121 (394)
T ss_pred CCHHHHHHHHHHHHHhCCC---eEEEe-ccHHHHHHHHHHHH---------------hCCCC--EEEEecCCcccHHHHH
Confidence 3444678999999999974 67887 66677888887766 47999 799999999987643
Q ss_pred ---HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccC
Q 038499 198 ---WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 198 ---~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~ 274 (609)
....|++++.++.. +.++++++++ ++|++|++++++||+|.+.|+++|+++||++|+++++|++++.
T Consensus 122 ~~~~~~~Gi~v~~vd~~-----~~~~l~~~i~-----~~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 122 EWLARDFGITVRFYDPL-----IGAGIADLIQ-----PNTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred HHHHHhcCeEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCccc
Confidence 34579999988643 4578888887 6899999999999999999999999999999999999999987
Q ss_pred CcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEech
Q 038499 275 PYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKA 314 (609)
Q Consensus 275 ~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~ 314 (609)
|... ++.. .|+|+++.|++|+++|..+ .|+++++++
T Consensus 192 ~~~~---~~l~-~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~ 229 (394)
T PRK07050 192 GLAF---KPFE-HGVDISVQALTKYQSGGSDVLMGATITADA 229 (394)
T ss_pred cccc---CHHH-cCCeEEEEECCceecCCCCeeEEEEEECCH
Confidence 7542 2211 2789999999999987654 576776543
|
|
| >PRK10534 L-threonine aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-18 Score=181.86 Aligned_cols=309 Identities=14% Similarity=0.100 Sum_probs=184.1
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
+++.+.+++.+..... . .| .......++++.|++++|.++. + ++++|+.+.+..+. ++
T Consensus 12 p~~~~~~a~~~~~~~~----~--~Y----~~~~~~~~L~~~la~~~g~~~~--~-v~~~g~~a~~~~l~-~~-------- 69 (333)
T PRK10534 12 PSRAMLEAMMAAPVGD----D--VY----GDDPTVNALQDYAAELSGKEAA--L-FLPTGTQANLVALL-SH-------- 69 (333)
T ss_pred CCHHHHHHHHhccCCC----c--cc----CCCHHHHHHHHHHHHHhCCCeE--E-EeCchHHHHHHHHH-Hh--------
Confidence 5567777776533211 1 11 1233467899999999998643 4 55466655333333 32
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHH--HHHcC-ceEEEEecCCCCCCCHHHHHHHHhhhcc-CCCceEEEEecccC
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLS--WRQSL-AEVVEIGLDDDGLLDIEALRSKLELYKD-AKRPILGSFSACSN 244 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~G-~~vv~v~~~~~g~ld~e~L~~al~~~~~-~~~~~lv~~s~~sn 244 (609)
+.+|| .|+++.+.|.+.... ....+ ++++.++.+.++.+|+++|+++++.... ..+++++++++++
T Consensus 70 -------~~~gd--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~- 139 (333)
T PRK10534 70 -------CERGE--EYIVGQAAHNYLYEAGGAAVLGSIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTH- 139 (333)
T ss_pred -------cCCCC--eeEEechhhhhHhcCCchHHhcCceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCC-
Confidence 36888 577776666533221 23333 7888888877889999999999863100 0158899998654
Q ss_pred ccccccCHHH---HHHHHHHhCCeEEEeccccCCcc---cccCCCCCCCCccEEEEcCCCCCCCCCCcE-EEEEechhhc
Q 038499 245 VTGIYSDTRS---IARLLHQYGGFACFDFAASGPYV---EIDVRSGQTDGYDAIFLSTHKFLGGPGSPG-ILLMTKALYQ 317 (609)
Q Consensus 245 ~TG~~~dl~~---I~~la~~~g~~vivD~A~~~~~~---~id~~~~~~~~~D~v~~S~hK~lggp~g~G-~L~~~~~~~~ 317 (609)
||.+.|.++ |+++|++||+++++|+|+..... ....... ....|.++.|++|.+|.+ .| +++.++++
T Consensus 140 -~G~v~~~~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~-~~~~~~~~~s~SK~~~~~--~G~~~~~~~~~-- 213 (333)
T PRK10534 140 -NGKVLPREYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEI-TQYCDSFTICLSKGLGTP--VGSLLVGNRDY-- 213 (333)
T ss_pred -CCeecCHHHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHH-HhcCCEEEEEeEcCCCCc--ccceEEcCHHH--
Confidence 699988765 56788999999999998653211 0111000 113466677899999866 46 67778877
Q ss_pred cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 318 LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
++.+.... . ...+..+..+.. .+++.. +++ ..+.+. +..+.++++.+.|+
T Consensus 214 i~~~~~~~------------------------~-~~~~~~~~~~~~~a~~~~~-l~~--~~~~~~-~~~~~r~~l~~~L~ 264 (333)
T PRK10534 214 IKRARRWR------------------------K-MTGGGMRQAGILAAAGLYA-LKH--NVARLQ-EDHDNAAWLAEQLR 264 (333)
T ss_pred HHHHHHHH------------------------H-HhCCchhhHHHHHHHHHHH-HHh--hHHHHH-HHHHHHHHHHHHHH
Confidence 33321110 0 001111222221 222221 211 122233 34446778899998
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
++ |++++.+ . .++.+...+ + .+..++.+.|.+ .||.+++|
T Consensus 265 ~~-g~~~~~~----~-~nfv~~~~~-~----------------~~~~~~~~~l~~-~gi~v~~~---------------- 304 (333)
T PRK10534 265 EA-GADVMRQ----D-TNMLFVRVG-E----------------EQAAALGEYMRE-RNVLINAS---------------- 304 (333)
T ss_pred hC-CCccCCC----C-ceEEEEECC-c----------------hhHHHHHHHHHH-cCeeecCC----------------
Confidence 87 7777643 2 344444333 1 135678887755 69999843
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
..+|++.++..|++|+++++++|+.++.
T Consensus 305 -------------------~~~rl~~~~r~t~e~~~~~~~~l~~~~~ 332 (333)
T PRK10534 305 -------------------PIVRLVTHLDVSREQLAEVVAHWRAFLA 332 (333)
T ss_pred -------------------ceEEEEEEeCCCHHHHHHHHHHHHHHhc
Confidence 1368877666799999999999987653
|
|
| >KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=166.72 Aligned_cols=335 Identities=13% Similarity=0.045 Sum_probs=225.6
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC------CCCcEEEeCChHHHHHHHHHHHhc
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG------QEDAMIFCGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~------~~~~vift~sGttaal~~l~~~l~ 161 (609)
+....+++|+.+.++.--+|. +..+.....+|+++|++++-+ + ++|++| +|...||..++.++.
T Consensus 78 ~ts~~a~~Av~~al~Sgk~N~--------Yaps~G~~~AR~AVAeYl~~~l~~kl~a-~DV~lt-sGC~qAIe~~i~~LA 147 (447)
T KOG0259|consen 78 RTSQEAEQAVVDALRSGKGNG--------YAPSVGILPARRAVAEYLNRDLPNKLTA-DDVVLT-SGCSQAIELAISSLA 147 (447)
T ss_pred cCCHHHHHHHHHHHhcCCCCC--------cCCccccHHHHHHHHHHhhcCCCCccCc-CceEEe-ccchHHHHHHHHHhc
Confidence 456778888888886422222 222333667899999996643 3 379999 899999999999885
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEE
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSF 239 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~ 239 (609)
+||. .|+++.+.|+-+..-++..|.+|+++.+-+ ++++|++.+|+.++ ++|..+++
T Consensus 148 ---------------~p~a--NILlPrPGfp~Y~~~a~~~~lEVR~ydlLPe~~weIDL~~veal~D-----ENT~Aivv 205 (447)
T KOG0259|consen 148 ---------------NPGA--NILLPRPGFPLYDTRAIYSGLEVRYYDLLPEKDWEIDLDGVEALAD-----ENTVAIVV 205 (447)
T ss_pred ---------------CCCC--ceecCCCCCchHHHhhhhcCceeEeecccCcccceechHHHHHhhc-----cCeeEEEE
Confidence 7888 699999999988888888999999998743 78999999999998 68999999
Q ss_pred ecccCccccccC---HHHHHHHHHHhCCeEEEeccccC----CcccccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEE
Q 038499 240 SACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG----PYVEIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLM 311 (609)
Q Consensus 240 s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~----~~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~ 311 (609)
.+|+||.|.+.. +++|+++|+++|+++|.|+.+.- +.-.+.|..+...-.-+...+.+|-+--|+ .+||+++
T Consensus 206 iNP~NPcGnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGWRlGWi~~ 285 (447)
T KOG0259|consen 206 INPNNPCGNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGWRLGWIAL 285 (447)
T ss_pred eCCCCCCcccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCceeeeEEE
Confidence 999999999976 78999999999999999998541 122234444322112334457788776564 5999999
Q ss_pred echhhccCCCCCCccCCCceEeeccccccccccccccccc--ccCCChhHHHHHHHHHHHHHHH--hcCHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEER--ESGGTPQVIQMIRAALAFWVKE--YIGHEVIKKQEETY 387 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r--~~~gtp~i~~~~~aal~~~~~~--~~g~~~i~~~~~~l 387 (609)
++.. ..++.. ...+.+... ...|.+.++ ++|+--.+.+ +.-.+....-.+..
T Consensus 286 hD~~---gvf~~~------------------~~~q~~~~~~~~~~~p~Tii---Q~AlP~IL~kTp~efF~k~~~~lk~n 341 (447)
T KOG0259|consen 286 HDPR---GVFRDT------------------KVVQGIKNFLDIIPGPATII---QGALPDILEKTPEEFFDKKLSFLKSN 341 (447)
T ss_pred eccc---ccccch------------------HHHHHHHHHHhccCCccHhH---HHHhHHHHHhChHHHHHHHHHHHHhh
Confidence 8765 111111 000000000 112222333 3333322221 22345556677778
Q ss_pred HHHHHHHhCCCCceE-EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh
Q 038499 388 IERALERLLPNQNIK-ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 388 ~~~~~~~L~~~p~i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
++...++|+++|++. ...|. ...+.+.-..-.. -..+-+.-+++..|.++..+.+-+|.++.
T Consensus 342 a~l~y~~Lk~IP~l~cp~kPe----g~mylmv~l~~s~-----------~~~~~dD~dFc~kL~~Eesv~~LPG~af~-- 404 (447)
T KOG0259|consen 342 ADLCYSRLKDIPCLTCPVKPE----GCMYLMVKLNLSL-----------FPDIEDDVDFCQKLAREESVICLPGQAFG-- 404 (447)
T ss_pred HHHHHHHHhcCCCcccCcCCC----cceEEEeccchhh-----------hccccccHHHHHHHhhhcceEEecccccc--
Confidence 899999999999998 44442 2222222211000 00112345677777777899999887655
Q ss_pred hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 467 ~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++|+|+++. ...+.++..++.|+....+
T Consensus 405 ---------------------------~~nw~Ri~i~--~~~~~leea~~Rik~Fc~R 433 (447)
T KOG0259|consen 405 ---------------------------LKNWLRIVIT--VEEEMLEEAFSRIKEFCDR 433 (447)
T ss_pred ---------------------------CCCeEEEEEc--cChHHHHHHHHHHHHHHHh
Confidence 3699999997 5778899999999988754
|
|
| >TIGR03801 asp_4_decarbox aspartate 4-decarboxylase | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.9e-18 Score=182.85 Aligned_cols=338 Identities=14% Similarity=0.056 Sum_probs=195.4
Q ss_pred HHHHHHhCC--CCCC--cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc--
Q 038499 128 NYIKKCLGG--GQED--AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS-- 201 (609)
Q Consensus 128 ~~ia~~~g~--~~~~--~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-- 201 (609)
+++.+..+. .+.+ +|++| +|+++++..++.++.. ...+.||| .|++..+.|+.+....+..
T Consensus 140 ~y~~~~~~~~~~~~~~~~V~it-~Gat~al~~~~~~l~~----------~~ll~pGD--~Vlv~~P~y~~y~~~~~l~~~ 206 (521)
T TIGR03801 140 QYLIQEMCGNKPPPGEFDLFAV-EGGTAAMCYIFDSLKA----------NELLKKGD--KIALMTPIFTPYLEIPELPRY 206 (521)
T ss_pred HHHHhhccCCCCCCCcCeEEEe-CCHHHHHHHHHHHHhH----------hhcCCCCC--EEEEeCCCcHHHHHHHHHhcC
Confidence 455554432 3333 68888 8899899887765310 00147999 6999999998887776554
Q ss_pred CceEEEEecCC--C-----CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHh--CCeEEEe
Q 038499 202 LAEVVEIGLDD--D-----GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQY--GGFACFD 269 (609)
Q Consensus 202 G~~vv~v~~~~--~-----g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~--g~~vivD 269 (609)
|++++.|+.+. + +.+|+++|+++++ ++++++++++|+||||.+.+ +++|+++|++| ++++|+|
T Consensus 207 g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~-----~~~kai~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~D 281 (521)
T TIGR03801 207 DFEVVRIKADEMTEDGTHTWQYPDKELEKLRD-----PSIKALFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTD 281 (521)
T ss_pred CcEEEEeecccccccccccCCCCHHHHHHhcC-----CCCcEEEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEEC
Confidence 78888888753 2 6789999998876 68999999999999999988 56678889987 9999999
Q ss_pred ccccCCc-ccccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhh---ccCCCCCCccCCCceEeec-cccccccc
Q 038499 270 FAASGPY-VEIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALY---QLGSFPPSTCGGGTVNYVN-GFNEKDTL 343 (609)
Q Consensus 270 ~A~~~~~-~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~---~l~~~~p~~~ggg~v~~~~-~~~~~~~~ 343 (609)
++++.-. ....+... .....+++.|++|.+|.|+ .+|+++++++.+ .+..+++.....-.-.|.. ...++.-.
T Consensus 282 EvY~~f~~~~~sl~~~-~~~~vI~v~SfSK~fg~~G~RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~ 360 (521)
T TIGR03801 282 DVYGTFVDDFRSLFAE-LPYNTIGVYSFSKYFGATGWRLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLK 360 (521)
T ss_pred CCchhhcccccchhhh-CCCCEEEEEcchhhccCchhhhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhh
Confidence 9976321 11111111 1123577889999997553 499999986511 0211110000000000000 00001111
Q ss_pred ccccc-------cccccCCChhHHHH--HH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcc
Q 038499 344 YLEDI-------EERESGGTPQVIQM--IR-AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA 413 (609)
Q Consensus 344 ~~~~~-------~~r~~~gtp~i~~~--~~-aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~ 413 (609)
+.+.+ ......|.+...+. .. ++.+++-......+.+++..++.++.+.+.| |+.+... .+..+
T Consensus 361 fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~L----g~~~~~~--~~~g~ 434 (521)
T TIGR03801 361 FIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDKENAYKAETKDICRRREKLLFRGL----GLPLQED--PNDVA 434 (521)
T ss_pred hHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhc----CCCCcCC--CCCeE
Confidence 11110 11122333333332 11 1222221111234555666666777777777 3322111 13445
Q ss_pred eEEEEeccCCCCCcCCCCCCCC-----CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhh
Q 038499 414 ILSFNIHSSTINSSLGENTKTE-----TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQK 488 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~-----~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~ 488 (609)
++.|.-.. ..... ..+. -....+..+++..|.++.||.+.+|..|..+
T Consensus 435 ~Y~~~di~-~~~~~----~~~~~f~~~l~~~~~~~~~~~~L~~e~gV~v~PG~~Fg~~---------------------- 487 (521)
T TIGR03801 435 YYTLIDLE-EWAEK----NYGEEFSSYLKKNYSPVDVLFRLAEETGIVLLPGGGFGGP---------------------- 487 (521)
T ss_pred EEEEeehH-HHHHH----hcchHHHHHHhccCCHHHHHHHHHHhCCEEEeCchhcCCC----------------------
Confidence 55555443 11000 0000 0001245678888888899999999877532
Q ss_pred CCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 489 GYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 489 ~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+++|||+.. .+++++..+.+.|+.++++
T Consensus 488 ------~~~vRisla~-l~~~~~~~~~~rl~~~~~~ 516 (521)
T TIGR03801 488 ------EWSVRVSLAN-LNEYDYAEIGRAIRKILDE 516 (521)
T ss_pred ------CCeEEEEecC-CCHHHHHHHHHHHHHHHHH
Confidence 3689999952 5788899999999988754
|
This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1). |
| >PRK07049 methionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=8.8e-18 Score=181.31 Aligned_cols=310 Identities=16% Similarity=0.101 Sum_probs=193.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH---
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW--- 198 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--- 198 (609)
....+++.|+++.|.+ +++++++|+. ++..++..+ +++|| .|+++.+.|+.+...+
T Consensus 84 t~~~Le~~lA~leg~~---~~iv~~sG~~-Ai~~~l~al---------------~~~Gd--~Vv~~~p~Y~~~~~~~~~~ 142 (427)
T PRK07049 84 NSEIVEDRLAVYEGAE---SAALFSSGMS-AIATTLLAF---------------VRPGD--VILHSQPLYGGTETLLAKT 142 (427)
T ss_pred CHHHHHHHHHHHhCCC---cEEEEccHHH-HHHHHHHHH---------------hCCCC--EEEEcCCCcccHHHHHHHH
Confidence 3567899999999865 3455557776 577776655 47899 6889988888775543
Q ss_pred -HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHH------hCCeEEEecc
Q 038499 199 -RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQ------YGGFACFDFA 271 (609)
Q Consensus 199 -~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~------~g~~vivD~A 271 (609)
...|++++.++.. .|++++++++.+....++++++++++++||||.+.|+++|.+++++ +++++++|++
T Consensus 143 l~~~Gi~~v~~~~~----~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDet 218 (427)
T PRK07049 143 FRNFGVGAVGFADG----LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNT 218 (427)
T ss_pred HHhcCcEEEEEeCC----CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECC
Confidence 4578887777622 4778888777532222579999999999999999999999999988 8999999999
Q ss_pred ccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccc
Q 038499 272 ASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 272 ~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (609)
...+.....+ . .+.|+++.|++|++||..| .|+++.++++ ++.+....
T Consensus 219 y~~~~~~~pl-~---~g~divv~S~SK~~gG~~glr~G~vv~~~~l--~~~l~~~~------------------------ 268 (427)
T PRK07049 219 LLGPVFQKPL-E---HGADLSVYSLTKYVGGHSDLVAGAVLGRKAL--IRQVRALR------------------------ 268 (427)
T ss_pred ccccccCCcc-c---cCCCEEEEcCceeecCCCCcEEEEEECCHHH--HHHHHHHH------------------------
Confidence 6654322222 1 2679999999999997543 7999888776 22221110
Q ss_pred ccccCCChhHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC----C-----------CCCc
Q 038499 350 ERESGGTPQVIQM-IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT----S-----------TKRQ 412 (609)
Q Consensus 350 ~r~~~gtp~i~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~----~-----------~~r~ 412 (609)
.....+.+...+. +..++ .......++..+.++.+.+.|+++|+++ |+-|. + ....
T Consensus 269 ~~~g~~ls~~~a~l~~r~L-------~tl~~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g 341 (427)
T PRK07049 269 SAIGTQLDPHSCWMLGRSL-------ETLVLRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAG 341 (427)
T ss_pred HhcCCCCCHHHHHHHHcCC-------ChHHHHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCc
Confidence 0000111122111 11111 1233444556778889999999988874 44331 1 1235
Q ss_pred ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhC
Q 038499 413 AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKG 489 (609)
Q Consensus 413 ~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~ 489 (609)
++++|.+.. +. -....+.+.| +.+.+.+.-|...+ .|.......+..+...
T Consensus 342 ~~~s~~~~~-~~---------------~~~~~f~~~l-~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~--------- 395 (427)
T PRK07049 342 STFSFDIKG-GQ---------------AAAFRFLNAL-QIFKLAVSLGGTESLASHPASMTHSGVPADVRE--------- 395 (427)
T ss_pred cEEEEEEcC-CH---------------HHHHHHHHcC-cccEEcccCCCCCceeeCCCccccccCCHHHHH---------
Confidence 688888765 21 1234555555 45666666564332 1211111122221111
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 490 ~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
..|+.++.||||++. |+++.+++-|+..++
T Consensus 396 ~~gi~~~liR~svGl----E~~~dl~~dl~~al~ 425 (427)
T PRK07049 396 RIGVLESTIRLSIGI----EHPDDLIADLAQALD 425 (427)
T ss_pred hcCCCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence 246678999999996 455555555555443
|
|
| >KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-18 Score=166.42 Aligned_cols=291 Identities=17% Similarity=0.211 Sum_probs=204.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH---HH
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS---WR 199 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~---~~ 199 (609)
..++++.+|+++|-+.. +|+.|||.+++-.+...+. ++|. .|++++..|--.... ..
T Consensus 58 t~rLE~~vA~l~GKEAg---LFv~SGTmgNllaIm~Hc~---------------~rg~--eii~gd~~HI~~~E~gg~s~ 117 (384)
T KOG1368|consen 58 TNRLEQRVAELFGKEAG---LFVPSGTMGNLLAIMVHCH---------------QRGS--EIIVGDRAHIHRYEQGGISQ 117 (384)
T ss_pred HHHHHHHHHHHhCccce---eeecccccccHHHHHHHhc---------------CCCc--eEEeccchheeehhccChhh
Confidence 45688899999998754 7888999998777665543 5777 699999998755432 23
Q ss_pred HcCceEEEEecCCCCCCCHHHHHHHHhhhc---cCCCceEEEEecccCccc-cccCHH---HHHHHHHHhCCeEEEeccc
Q 038499 200 QSLAEVVEIGLDDDGLLDIEALRSKLELYK---DAKRPILGSFSACSNVTG-IYSDTR---SIARLLHQYGGFACFDFAA 272 (609)
Q Consensus 200 ~~G~~vv~v~~~~~g~ld~e~L~~al~~~~---~~~~~~lv~~s~~sn~TG-~~~dl~---~I~~la~~~g~~vivD~A~ 272 (609)
..|+.++.+...++|.++++++++++..+. +.+.|++|++.+.+|.+| .+.|++ +|.++|++||+.++.|+|-
T Consensus 118 l~gv~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~lak~~glkLH~DGAR 197 (384)
T KOG1368|consen 118 LAGVHVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKALAKRHGLKLHMDGAR 197 (384)
T ss_pred hccceeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHHHHhccCCeeecchhh
Confidence 357888888888899999999999997432 445789999999999887 888876 5788999999999999982
Q ss_pred c---CCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCC--CccCCCceEeeccccccccccccc
Q 038499 273 S---GPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPP--STCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 273 ~---~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p--~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
- +-...+.++.. ....|.+..+++|.+|.|-| .+++.+++++ ++.+- -..|||+
T Consensus 198 i~NAavasgV~vk~i-~~~fDSVsiCLSKglgAPVG-SViVG~k~FI--~kA~~~RKalGGGm----------------- 256 (384)
T KOG1368|consen 198 IFNAAVASGVPVKKI-CSAFDSVSICLSKGLGAPVG-SVIVGSKDFI--DKARHFRKALGGGM----------------- 256 (384)
T ss_pred hhhHHHHcCCCHHHH-HHhhhhhhhhhhccCCCCcc-cEEEccHHHH--HHHHHHHHHhcCch-----------------
Confidence 1 11222233322 12469999999999999987 8999999983 33211 1123332
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCc
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
..+--+.++++..+ + .... ..++.++.+..+.+.+...+++++-.+. -...++...+.. +.
T Consensus 257 ---------RQsGvLaaaaLval--~-~~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a--~etNiv~~~l~q-~~--- 317 (384)
T KOG1368|consen 257 ---------RQSGVLAAAALVAL--D-ENVP-LLRADHKRAKELAEYINTPEEIRVEVPA--VETNIVNMVLCQ-AR--- 317 (384)
T ss_pred ---------hHHHHHHHHHHHHh--h-cchH-HHHHHHHHHHHHHHHhccccceeeecch--hhcceeeeeccc-cc---
Confidence 22222233443322 2 1233 4455666777777778777778876552 233444444443 22
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC
Q 038499 428 LGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS 507 (609)
Q Consensus 428 ~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t 507 (609)
++.+.+++.| ++.||.+-+|. ...+|+.+++-.|
T Consensus 318 ------------~~~~~l~~~~-~k~gi~lm~~~---------------------------------s~r~Rivlh~Qvt 351 (384)
T KOG1368|consen 318 ------------LTAEELCKFL-EKNGILLMGGA---------------------------------SRRIRIVLHHQVT 351 (384)
T ss_pred ------------CCHHHHHHHH-HHCCeEEeecc---------------------------------ccceEEEEEEecC
Confidence 7889999999 55799988553 1458999999999
Q ss_pred HHHHHHHHHHHH
Q 038499 508 NEEFEFTLEALE 519 (609)
Q Consensus 508 ~eeid~ll~al~ 519 (609)
++++++++.++.
T Consensus 352 ~~~ve~~~~~~~ 363 (384)
T KOG1368|consen 352 DEDVEYVKSVLS 363 (384)
T ss_pred HHHHHHHHHHHH
Confidence 999999999995
|
|
| >PRK04073 rocD ornithine--oxo-acid transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-17 Score=177.23 Aligned_cols=337 Identities=17% Similarity=0.193 Sum_probs=201.3
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+.+.... .... . .......++.++++++.+.
T Consensus 29 ~~G~~l~d~~G~---~~lD~~~g~~~~~lGh~~p~v~~ai~~~~~~~~-~~~~--~----~~~~~~~~l~~~l~~~~~~- 97 (396)
T PRK04073 29 AEGVWVKDPEGN---RYMDMLSAYSAVNQGHRHPKIIQALKDQADKVT-LTSR--A----FHSDQLGPWYEKVAKLTGK- 97 (396)
T ss_pred eeecEEEECCCC---EEEEcCCCHHhccCCCCCHHHHHHHHHHHhhcc-cccc--c----cCCHHHHHHHHHHHhcCCC-
Confidence 444555555564 48997543 4567899999988876531 1110 0 1234456778888888764
Q ss_pred CCCcEEEeCChHHHHHHHHHHHh-cccchhhHHHHHHhhhcCCCceEEEECCCCcc-chHHHHHHcCc------------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVM-GIAVPSILREKLIKCLRDEERWVVFVGPHEHH-SNLLSWRQSLA------------ 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l-~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~-s~~~~~~~~G~------------ 203 (609)
+.++|+.||+.+.. .++.+. .... . ....++|.. .|++....|| .....+...+.
T Consensus 98 --~~~~~~~SGseA~e-~Alk~a~~~~~------~-~~g~~~~r~-~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~ 166 (396)
T PRK04073 98 --DMVLPMNTGAEAVE-TAIKAARRWAY------D-VKGVEPNKA-EIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLP 166 (396)
T ss_pred --CeEEEcCChHHHHH-HHHHHHHHHhh------h-ccCCCCCCC-EEEEECCCcCCCCHHHHhhcCCcccccCCCCCCC
Confidence 27888888888633 333322 1000 0 000113433 4555554444 44444433221
Q ss_pred eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Cccc
Q 038499 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVE 278 (609)
Q Consensus 204 ~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~ 278 (609)
.+..++.+ |+++|++++. +++++++++.++|+||.+.| +++|.++|++||+++|+|+++.. +...
T Consensus 167 ~~~~~~~~-----d~~~l~~~i~-----~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g 236 (396)
T PRK04073 167 GIKKIPYG-----DLEALKAAIT-----PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTG 236 (396)
T ss_pred CceEeCCC-----CHHHHHHhcc-----cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhCCCcCc
Confidence 12333332 7899999887 57899999999999999987 78999999999999999999873 2211
Q ss_pred ----ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 279 ----IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 279 ----id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
.+... ..+|++++ +|.+|++ ..+|++++++++ ++.+.+...+ . ..
T Consensus 237 ~~~~~~~~~---~~pdi~~~--sK~lg~gg~~ig~~~~~~~i--~~~~~~~~~~-~----------------------t~ 286 (396)
T PRK04073 237 KLFACDWDN---VTPDMYIL--GKALGGGVFPISCVAANRDI--LGVFTPGSHG-S----------------------TF 286 (396)
T ss_pred HHHHhhhcC---CCCCEEEe--cccccCCCCcceEEEEcHHH--HhhhcCCCCC-C----------------------CC
Confidence 12111 14587776 5999876 458999999988 3443221000 0 01
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCC
Q 038499 354 GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTK 433 (609)
Q Consensus 354 ~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~ 433 (609)
.+.|.......+++... +. +.+.++.+++.+++.+.|+++. ...+... ..+..++.+.+..
T Consensus 287 ~~~~~~~aaa~aaL~~~--~~---~~l~~~~~~~~~~l~~~L~~l~-~~~i~~~-~~~g~~~~~~~~~------------ 347 (396)
T PRK04073 287 GGNPLACAVSIAALEVL--EE---EKLPERSLELGEYFKEQLKEID-NPMIKEV-RGRGLFIGVELNE------------ 347 (396)
T ss_pred CCCHHHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHhhc-CCcccce-ecceEEEEEEecc------------
Confidence 22232222233444332 11 2355677778888888887752 1111111 1122333333222
Q ss_pred CCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHH
Q 038499 434 TETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513 (609)
Q Consensus 434 ~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ 513 (609)
....+.+.|.+ .||.+.+. .++++|+++++.+|++|+++
T Consensus 348 -------~~~~~~~~l~~-~Gv~~~~~---------------------------------~~~~iRi~p~l~~t~e~i~~ 386 (396)
T PRK04073 348 -------PARPYCEALKE-EGLLCKET---------------------------------HETVIRFAPPLVITKEELDW 386 (396)
T ss_pred -------hHHHHHHHHHH-CCeEEecC---------------------------------CCCEEEEECCcccCHHHHHH
Confidence 35678888866 59987621 13789999999999999999
Q ss_pred HHHHHHHHH
Q 038499 514 TLEALEFIA 522 (609)
Q Consensus 514 ll~al~~v~ 522 (609)
++++|++++
T Consensus 387 ~~~~l~~~l 395 (396)
T PRK04073 387 AFEKIKAVL 395 (396)
T ss_pred HHHHHHHHh
Confidence 999998764
|
|
| >PRK09275 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-17 Score=182.71 Aligned_cols=322 Identities=14% Similarity=0.066 Sum_probs=190.0
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC--ceEEEEecCC--CCC
Q 038499 140 DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL--AEVVEIGLDD--DGL 215 (609)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G--~~vv~v~~~~--~g~ 215 (609)
++|++| +|+++++..++.++.. ...++||| .|+++.+.|+.+....+..| ++++.++.++ ++.
T Consensus 162 ~~I~vT-~Ga~~al~~~~~aL~~----------~~ll~pGD--~Vlv~~P~y~~Y~~~~~l~g~~~~~v~v~~~~~~~f~ 228 (527)
T PRK09275 162 FDLFAV-EGGTAAMCYIFDSLKE----------NGLLKAGD--KIALMTPIFTPYLEIPELPRYDLEVVHINADEENEWQ 228 (527)
T ss_pred CeEEEe-CCHHHHHHHHHHHHhh----------hhcCCCCC--EEEEeCCChHHHHHHHHHcCCCeEEEEeecCcccCCC
Confidence 378888 8999999888775310 00158999 69999999999887777664 5566666543 468
Q ss_pred CCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHH--hCCeEEEeccccCCc-ccccCCCCCCCCc
Q 038499 216 LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQ--YGGFACFDFAASGPY-VEIDVRSGQTDGY 289 (609)
Q Consensus 216 ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~--~g~~vivD~A~~~~~-~~id~~~~~~~~~ 289 (609)
+|+++|+++++ +++|++++++|+||||.+.+ +++|+++|++ +++++|+|+++..-. ....+... ....
T Consensus 229 ~d~~~l~~~~~-----~~tkai~l~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~~~s~~~~-~~~~ 302 (527)
T PRK09275 229 YPDSELEKLRD-----PSIKALFLVNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVDDFRSLFAV-LPYN 302 (527)
T ss_pred CCHHHHHhhcC-----CCCCEEEEeCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcccccCHHHh-CCCC
Confidence 99999999887 68999999999999999988 5678888854 599999999975321 11111111 1133
Q ss_pred cEEEEcCCCCCCCCC-CcEEEEEech-----hhccCCCCCC-------ccCCCceEeeccccccccccccc-------cc
Q 038499 290 DAIFLSTHKFLGGPG-SPGILLMTKA-----LYQLGSFPPS-------TCGGGTVNYVNGFNEKDTLYLED-------IE 349 (609)
Q Consensus 290 D~v~~S~hK~lggp~-g~G~L~~~~~-----~~~l~~~~p~-------~~ggg~v~~~~~~~~~~~~~~~~-------~~ 349 (609)
.+++.|++|.+|-|+ .+|+++++++ + ++.++.. .++.-+ ..+..-.+.+. ..
T Consensus 303 ~I~v~SfSK~f~mtG~RlG~i~~~~~~v~~~~--i~~l~~~~~~~~~~ry~~~~------~~p~~~~fidrlvad~~~v~ 374 (527)
T PRK09275 303 TILVYSFSKYFGATGWRLGVIALHEDNVFDKL--IAKLPEEKKKELDKRYSSLT------TDPEKLKFIDRLVADSRQVA 374 (527)
T ss_pred EEEEeehhhhccCcHhHHhhhhcCchhHHHHH--HHhccHHHHHHHHhhhhhcc------CCcchhhhHHHHHHHHHHHH
Confidence 577889999997443 4899999886 3 2222100 000000 00000001110 01
Q ss_pred ccccCCChhHHHHHHH---HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCC
Q 038499 350 ERESGGTPQVIQMIRA---ALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINS 426 (609)
Q Consensus 350 ~r~~~gtp~i~~~~~a---al~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~ 426 (609)
.....|.+...+...+ ..+++-......+.+++..++.++.+.+.|. +.+.. ..+..+++.|.-.. ....
T Consensus 375 ~~~t~~~s~p~Q~a~al~~~~all~~~~~~~~~~~~~~~~Rr~~l~~~Lg----~~~~~--~~p~g~fY~~~di~-~~~~ 447 (527)
T PRK09275 375 LNHTAGLSTPQQVQMALFSLFALLDEEDAYKKAMKDIIRRRYKALYEGLG----LPEPE--DPNNAAYYTLIDLE-EWAE 447 (527)
T ss_pred HhhccCCCCHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHcC----CCCcC--CCCCeeEEEEEEhH-Hhhh
Confidence 1122344444443211 1121111112345566666777777777772 22211 11345566555333 1100
Q ss_pred cC-CCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC
Q 038499 427 SL-GENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY 505 (609)
Q Consensus 427 ~~-~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~ 505 (609)
.. ...-..--....+..+++..|.++.||.+.+|..|..+ ++++|||+..
T Consensus 448 ~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~----------------------------~~~vRis~a~- 498 (527)
T PRK09275 448 KNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGP----------------------------EWSVRVSLAN- 498 (527)
T ss_pred hccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCC----------------------------CCeEEEEEec-
Confidence 00 00000000001246778888888899999999877521 4789999952
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 038499 506 MSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 506 ~t~eeid~ll~al~~v~~~ 524 (609)
.+++++..+.+.|+.++.+
T Consensus 499 ~~~~~~~~~~~rl~~~l~~ 517 (527)
T PRK09275 499 LNEEDYAKIGKAIRKLLDE 517 (527)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4788999999999988765
|
|
| >PRK05967 cystathionine beta-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.8e-18 Score=178.61 Aligned_cols=309 Identities=13% Similarity=0.047 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-
Q 038499 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS- 197 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~- 197 (609)
.+...+.+++.++.+-+.. +.++++ ||+ +|+..++..+ +++|| +|+++...|+++...
T Consensus 62 gnPt~~~Le~~la~le~~~--~~v~~s-SG~-aAi~~~l~al---------------l~~GD--~Vlv~~~~Y~~~~~l~ 120 (395)
T PRK05967 62 GTPTTDALCKAIDALEGSA--GTILVP-SGL-AAVTVPFLGF---------------LSPGD--HALIVDSVYYPTRHFC 120 (395)
T ss_pred CChHHHHHHHHHHHHhCCC--CEEEEC-cHH-HHHHHHHHHh---------------cCCCC--EEEEccCCcHHHHHHH
Confidence 3455677888898887754 256665 665 5777776655 58999 799999999887643
Q ss_pred ---HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccC
Q 038499 198 ---WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 198 ---~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~ 274 (609)
.+..|+++..++.+ +.++++++++ ++|++|++++++||++.+.|+++|+++||++|+++++|++++.
T Consensus 121 ~~~l~~~Gi~v~~vd~~-----~~e~l~~al~-----~~TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 121 DTMLKRLGVEVEYYDPE-----IGAGIAKLMR-----PNTKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred HHHHHhcCeEEEEeCCC-----CHHHHHHhcC-----cCceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 35679999988643 4578999998 6899999999999999999999999999999999999999887
Q ss_pred CcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 275 PYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 275 ~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
|... +++. .|+|+++.|.+|+++|-.. .|+++.+++.. +.+.. .+.
T Consensus 191 p~~~---~pl~-~GaDivv~S~tKy~~Gh~d~~~G~v~~~~~~~--~~l~~--------------------------~~~ 238 (395)
T PRK05967 191 PLYF---RPLD-FGVDISIHAATKYPSGHSDILLGTVSANEKCW--PQLLE--------------------------AHG 238 (395)
T ss_pred ceec---ChhH-cCCCEEEEecccccCCCCCeeEEEEEcCHHHH--HHHHH--------------------------HHH
Confidence 6322 2211 2899999999999987543 57666665541 11110 000
Q ss_pred cCCC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce-EEeCCC--C-----------CCCcceEEE
Q 038499 353 SGGT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI-KILGNT--S-----------TKRQAILSF 417 (609)
Q Consensus 353 ~~gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i-~v~~~~--~-----------~~r~~~~~f 417 (609)
..|. .+... +-+ .+....-+....++..+.+..+.+.|+++|.+ +|+-|. + ....++++|
T Consensus 239 ~~G~~~~p~d---a~l--~~rgl~Tl~lR~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf 313 (395)
T PRK05967 239 TLGLCAGPDD---TYQ--ILRGLRTMGIRLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSF 313 (395)
T ss_pred HcCCCCCHHH---HHH--HHcCcccHHHHHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEE
Confidence 1122 11111 111 11111223444566677788888899988887 455442 1 123578888
Q ss_pred EeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 418 NIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
.+.. +..+ + .-....+.+.| +.+.+.+.-|...+- ..| ..+... .+. + .++.++.
T Consensus 314 ~l~~-~~~~----------~-~~~~~~f~~~l-~l~~~~~slG~~~sL-i~~--~~~~~~----~~~---~--~~~~~~l 368 (395)
T PRK05967 314 VLAA-GPEK----------G-KAKAHAFLDAL-EIFGLGYSWGGYESL-ALH--VKLGDR----TVA---K--APYAGPV 368 (395)
T ss_pred EEcC-CCcc----------c-HHHHHHHHHhC-CcceEccCCCCccee-eee--CCCChh----Hhh---h--ccCCCCe
Confidence 8864 1000 0 01233455555 445555555543220 011 111110 011 1 1344589
Q ss_pred EEEecCCCCCHHHHHHHHHHHHH
Q 038499 498 TRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al~~ 520 (609)
||||++.-..++=++.+.++|+.
T Consensus 369 iRlSvGlEd~~dLi~Dl~~Al~~ 391 (395)
T PRK05967 369 IRLQIGLEDVPDLKADLERGFAA 391 (395)
T ss_pred EEEEeccCCHHHHHHHHHHHHHh
Confidence 99999976555555555555543
|
|
| >KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.3e-18 Score=173.19 Aligned_cols=345 Identities=15% Similarity=0.153 Sum_probs=228.7
Q ss_pred chHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHH
Q 038499 49 SSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128 (609)
Q Consensus 49 ~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~ 128 (609)
++.+..++..|+-+.-. +.+ | ..-|+|.-.+|.-+-......... -.|++.-+|.......-+..++-.
T Consensus 80 esl~qil~~cr~tl~y~---vKT--g--HprffNQl~~glD~~~Lag~wlT~----t~Ntn~~TYEiAPvF~lmE~~vl~ 148 (510)
T KOG0629|consen 80 ESLAQILEDCRDTLKYS---VKT--G--HPRFFNQLSSGLDPIGLAGEWLTS----TANTNMFTYEIAPVFVLMEEEVLA 148 (510)
T ss_pred hhHHHHHHHHHHHHHhh---hcc--C--CCcchhhhccCCCHHHHHHHHHHh----ccCCCCceEEecceEEeehHHHHH
Confidence 55778888888776421 111 2 234777777777665443333322 257777666666667777888889
Q ss_pred HHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC---ceE
Q 038499 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL---AEV 205 (609)
Q Consensus 129 ~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G---~~v 205 (609)
.+.+..|-+.+..-||+++|+.+++..+..+.--..|.....+. ..++ .-+++++...|+|...+.+.+| -.+
T Consensus 149 km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm-~~~p---~lilFtSeesHYSi~kaAa~lg~gtd~c 224 (510)
T KOG0629|consen 149 KMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGM-FALP---PLILFTSEESHYSIKKAAAFLGLGTDHC 224 (510)
T ss_pred HHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhh-hcCC---cEEEEecccchhhHHHHHHHhccCCcee
Confidence 99999998875356888899999888776654323332111111 1122 2268889999999999988887 588
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhccC-CCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCC--
Q 038499 206 VEIGLDDDGLLDIEALRSKLELYKDA-KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVR-- 282 (609)
Q Consensus 206 v~v~~~~~g~ld~e~L~~al~~~~~~-~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~-- 282 (609)
+.|+.++.|.+++++||++|...+.. ..|-++..++.+++.|.+.|++.|+++|++|+.|+|||+|.++|..-....
T Consensus 225 ~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDdL~~iadiC~k~~lWmHvDAAwGGglLmS~k~R~ 304 (510)
T KOG0629|consen 225 IKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDDLNGIADICEKHKLWMHVDAAWGGGLLMSRKHRH 304 (510)
T ss_pred EEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCcHHHHHHHHHhcCEEEEeecccccccccChhhHh
Confidence 99999999999999999999754322 236899999999999999999999999999999999999988764321111
Q ss_pred CC-CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccc---cccccccccCCCh-
Q 038499 283 SG-QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY---LEDIEERESGGTP- 357 (609)
Q Consensus 283 ~~-~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~---~~~~~~r~~~gtp- 357 (609)
.+ ....+|.++.++||++|.|.-++.++.+.+-. +.+. ......|+. ..+..| ++......+.|..
T Consensus 305 kl~Giera~SvtwnpHK~~gaplqCsa~l~r~~gl-l~~C-----n~~~A~YLF---q~dK~YdvS~DTgdK~iQCGRh~ 375 (510)
T KOG0629|consen 305 KLTGIERANSVTWNPHKLMGAPLQCSAFLTREEGL-LQRC-----NQMSAIYLF---QQDKFYDVSYDTGDKAIQCGRHV 375 (510)
T ss_pred hccCccccCceeecHHHhhcCcchhhHHHHHHHHH-HHhh-----cccchhhhh---ccCceeecccccccchhhcCccc
Confidence 11 12457999999999999999899988887652 2222 111111110 011111 1111222333421
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEecc
Q 038499 358 QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHS 421 (609)
Q Consensus 358 ~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~ 421 (609)
++.-. =+.+.-+...|.+...++..++++|+.+++++-++.+.+-.. .+...+++|...+
T Consensus 376 D~FKl---WlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~~l~~~-~pe~~nv~fw~vp 435 (510)
T KOG0629|consen 376 DVFKL---WLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFEMLFEL-EPEHVNVCFWYVP 435 (510)
T ss_pred cHHHH---HHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccceehhcC-CCceEEEeeccCc
Confidence 22211 111222355788999999999999999999998887766542 2445667776665
|
|
| >COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.5e-17 Score=166.81 Aligned_cols=342 Identities=18% Similarity=0.154 Sum_probs=230.6
Q ss_pred CChHHHHHHHHHhhcCCccC--CCCCCchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 88 RSLRYIENYIINNVLPFYGN--THTCDSYVGQHTT-NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n--~~~~~~~~~~~~~-~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
-..+.|++++...+...|+. |+.. |+.|.... .....+.+..+++||++-. +|=-. ||+.+++..+..+
T Consensus 37 ~~S~aV~~A~gS~ltnKYAEGyPgkR-yYgGce~VD~vE~laierak~LFga~~a-nVQPh-SGs~AN~av~~Al----- 108 (413)
T COG0112 37 FTSPAVMEAQGSDLTNKYAEGYPGKR-YYGGCEYVDEVEELAIERAKKLFGAEYA-NVQPH-SGSQANQAVYLAL----- 108 (413)
T ss_pred cCCHHHHHHHhhhhhhccccCCCCcc-ccCCCeeHHHHHHHHHHHHHHHhCCCcc-ccCCC-CchHHHHHHHHHH-----
Confidence 45677888888888777754 4443 44555554 4445578889999999866 55555 8999877766554
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchHHHH---HHcC--ceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEE
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW---RQSL--AEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGS 238 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G--~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~ 238 (609)
++||| .|+-.+..|.+.+.-. ...| .+++..+++. ++.+|.|++++.+.+ .+||+++
T Consensus 109 -----------l~pGD--timgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e----~kPK~ii 171 (413)
T COG0112 109 -----------LQPGD--TIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKE----VKPKLII 171 (413)
T ss_pred -----------cCCCC--eEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHH----hCCCEEE
Confidence 48999 5888888877665322 2233 4677778885 699999999999987 5899876
Q ss_pred EecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEec-hhhc
Q 038499 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTK-ALYQ 317 (609)
Q Consensus 239 ~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~-~~~~ 317 (609)
.-. +..-...|.+++.++|++.|+++++|.||-+|.+.-...+-....+|++++|.||.|.||.| |+++.++ ++.
T Consensus 172 ~G~--SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPrG-G~Il~~~eel~- 247 (413)
T COG0112 172 AGG--SAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRG-GIILTNDEELA- 247 (413)
T ss_pred ECc--cccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCCc-eEEEeccHHHH-
Confidence 643 34446789999999999999999999998766544333332234689999999999999997 8888886 552
Q ss_pred cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 318 LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
+++....+-|. .|.|..--+.+.+.+|....+-+.+...++..++++.+.+.|.+
T Consensus 248 -kkin~aVFPg~------------------------qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~ 302 (413)
T COG0112 248 -KKINSAVFPGL------------------------QGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKE 302 (413)
T ss_pred -HHhhhhcCCcc------------------------CCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHH
Confidence 23332221111 13344333334444444333456678888888999999999988
Q ss_pred CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChh
Q 038499 398 NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEA 477 (609)
Q Consensus 398 ~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~ 477 (609)
. |+++++.....++ +...+.+ . .+.+......| ++.||.+.--.-...|.+.
T Consensus 303 ~-G~~vvsGgTdnHl--~lVDl~~-~---------------~~~Gk~ae~~L-~~~~It~NKN~iP~D~~~p-------- 354 (413)
T COG0112 303 R-GFKVVSGGTDNHL--VLVDLRS-K---------------GLTGKKAEAAL-ERAGITVNKNAIPFDPESP-------- 354 (413)
T ss_pred c-CCeEecCCccceE--EEEEccc-C---------------CCCHHHHHHHH-HHcCEeeccCCCCCCCCCC--------
Confidence 5 9999875322232 2222322 1 25677777777 6689988743221111110
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhcc
Q 038499 478 QSYQIRSAIQKGYVGVKPGWTRISFP----YYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~g~iRls~~----~~~t~eeid~ll~al~~v~~~~~ 526 (609)
..+..|||... .-+.++|++.+.+.|..++....
T Consensus 355 ---------------~~tSGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~~~~ 392 (413)
T COG0112 355 ---------------FVTSGIRIGTPAVTTRGFGEAEMEEIADLIADVLDGLK 392 (413)
T ss_pred ---------------CCCccceeccHHHhhcCCCHHHHHHHHHHHHHHHhccc
Confidence 12567888754 33468899999999998887654
|
|
| >cd00617 Tnase_like Tryptophanase family (Tnase) | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-17 Score=176.62 Aligned_cols=341 Identities=15% Similarity=0.110 Sum_probs=209.7
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL 202 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (609)
..++++.+++++|.+ .+++| +|.++|+..++.++ ++||| +| ++.+.+.++.......|
T Consensus 55 ~~~Leeaia~~~g~~---~vv~t-~~Gt~Al~la~~al---------------~~pGD--~V-~~~~~f~~~~~~i~~~G 112 (431)
T cd00617 55 FYDLEDAVQDLFGFK---HIIPT-HQGRGAENILFSIL---------------LKPGR--TV-PSNMHFDTTRGHIEANG 112 (431)
T ss_pred HHHHHHHHHHHHCCC---eEEEc-CCHHHHHHHHHHHh---------------CCCCC--EE-ccCCcccchHHHHHhCC
Confidence 567899999999985 67888 55566787777766 47999 55 56666667777788899
Q ss_pred ceEEEEecCC----------CCCCCHHHHHHHHhhhccCCCceEEEEecccCcc-ccccCH---HHHHHHHHHhCCeEEE
Q 038499 203 AEVVEIGLDD----------DGLLDIEALRSKLELYKDAKRPILGSFSACSNVT-GIYSDT---RSIARLLHQYGGFACF 268 (609)
Q Consensus 203 ~~vv~v~~~~----------~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~T-G~~~dl---~~I~~la~~~g~~viv 268 (609)
++++.+++++ .|.+|+++|+++|++. ...++++|+++.++|++ |...+. ++|.++|++||+++|.
T Consensus 113 a~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~-~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~ 191 (431)
T cd00617 113 AVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEV-GAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVL 191 (431)
T ss_pred CEeEEEecccccccccccCCCCCcCHHHHHHHhCcc-cCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 9999999863 3569999999999841 11348899999999998 898764 5789999999999999
Q ss_pred eccccCC-----------cccccCCCCC---CCCccEEEEcCCCCCCCCCCcEEEEEech-hhccCCCCCCccCCCceEe
Q 038499 269 DFAASGP-----------YVEIDVRSGQ---TDGYDAIFLSTHKFLGGPGSPGILLMTKA-LYQLGSFPPSTCGGGTVNY 333 (609)
Q Consensus 269 D~A~~~~-----------~~~id~~~~~---~~~~D~v~~S~hK~lggp~g~G~L~~~~~-~~~l~~~~p~~~ggg~v~~ 333 (609)
|+|+... +....+.+.. ....|.+++|++|-+++|.| |+++.+++ ++ .+++..... +
T Consensus 192 DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~~~~~~G-G~i~~~d~~l~--~~~~~~~~~-----~ 263 (431)
T cd00617 192 DAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKDGLVNIG-GFLALRDDELY--EEARQRVVL-----Y 263 (431)
T ss_pred EchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecCCCCccc-eEEEeCcHHHH--HHHHHhccc-----c
Confidence 9997642 2221111100 12469999999999887775 89999874 63 222110000 0
Q ss_pred ecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcc
Q 038499 334 VNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA 413 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~ 413 (609)
+.....|..+.... ++++..+.+..-.+.+.++. +.++++.+.|.+. |+.+..|. .+
T Consensus 264 ---------------~~~~~~gG~~~r~~--~A~A~gL~e~~~~~~l~~~~-~~r~~l~~~L~~~-G~~v~~P~----Gg 320 (431)
T cd00617 264 ---------------EGFVTYGGMAGRDM--EALAQGLREAVEEDYLRHRV-EQVRYLGDRLDEA-GVPIVEPA----GG 320 (431)
T ss_pred ---------------CCccccccccHHHH--HHHHHHHHhcccHHHHHHHH-HHHHHHHHHHHHC-CCCccCCC----cc
Confidence 00111122222222 12222221211133444443 3558888999887 78777653 34
Q ss_pred eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc-CcccCChhhhhhcCCChhHHHHHHHHHhhCCCC
Q 038499 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG-GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVG 492 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~-G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~ 492 (609)
+..|.-.. ... +........+..++..|.++.||.+.. |.... +.++...+. ..
T Consensus 321 h~v~~d~~-~~~-------~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~--------~~~~~~~~~---------~~ 375 (431)
T cd00617 321 HAVFIDAR-EFL-------PHIPQEQFPAQALAAELYLEAGVRAVELGIFSA--------GRDPNTGEN---------KY 375 (431)
T ss_pred eEEEEEhH-Hhc-------CCCCcccCcHHHHHHHHHHHcCeeEEeecceec--------ccCCCCCcc---------cC
Confidence 55444332 100 000000125778887777888998642 33211 111110000 00
Q ss_pred CCCcEEEEecCC-CCCHHHHHHHHHHHHHHHHhcccccCCCcccccCCceee
Q 038499 493 VKPGWTRISFPY-YMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTWCF 543 (609)
Q Consensus 493 ~~~g~iRls~~~-~~t~eeid~ll~al~~v~~~~~~~~p~y~~~~~~~~w~~ 543 (609)
-....+||.++- --|.++++++.++|..+.++... ++-|.|-+..-.-||
T Consensus 376 ~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~lr~ 426 (431)
T cd00617 376 PELELVRLAIPRRVYTQDHMDYVAAAVIALYERRED-IRGLRIVYEPKLLRH 426 (431)
T ss_pred CccceeEEeccccccCHHHHHHHHHHHHHHHhhHhh-CCCeEEEecCcccee
Confidence 013789999963 45899999999999999988443 445665544433333
|
This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia. |
| >PRK09440 avtA valine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-17 Score=179.39 Aligned_cols=313 Identities=14% Similarity=0.044 Sum_probs=181.3
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEE-CCCCccchHH
Q 038499 120 TNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFV-GPHEHHSNLL 196 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~ 196 (609)
..+++.+.+++.+..| ++++ +|++| +|+++++..++.++.-... -.+|| .|++ ..++|+.+..
T Consensus 77 ~~LR~aia~~~~~~~g~~v~~~-~I~it-~Ga~~al~~~~~~l~~~~~----------~~~gd--~v~i~~~P~y~~y~~ 142 (416)
T PRK09440 77 DELIEALAALLNERYGWNISPQ-NIALT-NGSQSAFFYLFNLFAGRRA----------DGSLK--KILFPLAPEYIGYAD 142 (416)
T ss_pred HHHHHHHHHHHHHHhCCCCChh-hEEEc-cChHHHHHHHHHHHhcccc----------CCCCC--eEEEecCCCchhhHH
Confidence 3444444444444445 4555 88888 8999999999887630000 02466 5888 6888888766
Q ss_pred HHHHcC----ceEEEEecCC---CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeE
Q 038499 197 SWRQSL----AEVVEIGLDD---DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFA 266 (609)
Q Consensus 197 ~~~~~G----~~vv~v~~~~---~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~v 266 (609)
..+..+ ..+..++++. +..+|+++|+ +. ++++++++++++||||.+++ +++|+++|++|++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-----~~~~~i~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~i 215 (416)
T PRK09440 143 AGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID-----EDTGAICVSRPTNPTGNVLTDEELEKLDALARQHNIPL 215 (416)
T ss_pred HhhccCceeecccccccccccccccCCCHHHcc--cC-----CCceEEEEecCCCCCCccCCHHHHHHHHHHHHHcCCcE
Confidence 544322 2222233333 2468999987 33 57899999999999999988 556888999999999
Q ss_pred EEeccccCCcccc---cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccc
Q 038499 267 CFDFAASGPYVEI---DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342 (609)
Q Consensus 267 ivD~A~~~~~~~i---d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (609)
|+|++++.....+ +..+. ..+.-+++.|++|+ +.| ..+|++++++++ ++.+...
T Consensus 216 I~De~Y~~~~~~~~~~~~~~~-~~~~vI~~~SfSK~-~~pGlRiG~~i~~~~l--~~~~~~~------------------ 273 (416)
T PRK09440 216 LIDNAYGPPFPGIIFSEATPL-WNPNIILCMSLSKL-GLPGVRCGIVIADEEI--IEALSNM------------------ 273 (416)
T ss_pred EEeCCccccCCCcchhhcCcc-ccCCeEEEeccccc-CCCcceEEEEeCCHHH--HHHHHHH------------------
Confidence 9999986422111 11110 01234777899997 545 359999998887 3332110
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHHHHHHHhCCC-C--ceEEeCCCCCCCcceE
Q 038499 343 LYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGH----EVIKKQEETYIERALERLLPN-Q--NIKILGNTSTKRQAIL 415 (609)
Q Consensus 343 ~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~----~~i~~~~~~l~~~~~~~L~~~-p--~i~v~~~~~~~r~~~~ 415 (609)
......+++.+.+.+. ..++ .+.... +.++...++.++.+.+.|.+. + ++.+..+ ..+++
T Consensus 274 ------~~~~~~~~s~~~q~~~--~~~l-~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~~~p----~gg~f 340 (416)
T PRK09440 274 ------NGIISLAPGRLGPAIA--AEMI-ESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLIHKP----EGAIF 340 (416)
T ss_pred ------HHHhccCCCcHHHHHH--HHHh-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEEecC----CCceE
Confidence 0001122333333222 1221 111111 112333334444455555432 2 3555444 33555
Q ss_pred EEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCC
Q 038499 416 SFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKP 495 (609)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~ 495 (609)
.|...+ .. ..+..++.+.|.+ .||.+++|..|......... ...
T Consensus 341 iw~~~~-~~--------------~~~~~~~~~~l~~-~gV~v~pg~~F~~~~~~~~~--------------------~~~ 384 (416)
T PRK09440 341 LWLWFK-DL--------------PITTEELYQRLKA-RGVLVVPGHYFFPGLDEDWP--------------------HAH 384 (416)
T ss_pred EEEECC-CC--------------CCCHHHHHHHHHH-CCEEEechHhhCCCCccccC--------------------CcC
Confidence 555444 10 0346778888855 69999998766411000000 013
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 496 GWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 496 g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
+++||+++ .++++++.++++|+++++..+
T Consensus 385 ~~iRis~~--~~~~~l~~~i~~l~~~~~~~~ 413 (416)
T PRK09440 385 QCIRMNYV--QDDEEIEKGIAILAEEVEKAY 413 (416)
T ss_pred ceEEEEec--CCHHHHHHHHHHHHHHHHHHh
Confidence 69999997 378999999999999886543
|
|
| >PTZ00125 ornithine aminotransferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-16 Score=170.77 Aligned_cols=344 Identities=16% Similarity=0.145 Sum_probs=203.3
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++....|+ .|+|..++ |-.++.|.+++.+.+... . +..... ......++++.++++.+.
T Consensus 20 ~~G~~~~d~dg~---~~lD~~~~~~~~~~Gh~~p~v~~a~~~~~~~~-~--~~~~~~----~~~~~~~~~~~l~~~~~~- 88 (400)
T PTZ00125 20 GKGVFVWDVEGK---KYYDFLSAYSAVNQGHCHPKILAALINQAQKL-T--LTSRAF----YNDVLGLAEKYITDLFGY- 88 (400)
T ss_pred eecCEEEeCCCC---EEEEcccCHhhccCCcCCHHHHHHHHHHHHhc-c--cccccc----cCHHHHHHHHHHHhCCCC-
Confidence 334556566664 38887643 335788999998887532 1 111010 134678889999988875
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc-hHHHHHHcCce------------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS-NLLSWRQSLAE------------ 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~~~~G~~------------ 204 (609)
+.++|++||+.+....+-.+...... + +.+..+.. .|++....+|+ ....+...+..
T Consensus 89 --~~~~~~~SGs~A~e~al~~~~~~~~~---~----~~~~~~~~-~vl~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~ 158 (400)
T PTZ00125 89 --DKVLPMNSGAEAGETALKFARKWGYE---V----KGIPENQA-KIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPG 158 (400)
T ss_pred --CEEEEeCCcHHHHHHHHHHHHHHHHh---c----cCCCCCCC-eEEEECCCcCCccHHHHhhcCCcchhccCCCCCCC
Confidence 27888889988644443322110000 0 00111222 35555544444 44444332211
Q ss_pred EEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc-CCccc-
Q 038499 205 VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVE- 278 (609)
Q Consensus 205 vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~-~~~~~- 278 (609)
++.++ ..|+++|+++++. +++++|+++.++|+||.+.| +++|.++|++||+++|+|++++ .+...
T Consensus 159 ~~~~~-----~~d~~~le~~l~~----~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~g~g~~G~ 229 (400)
T PTZ00125 159 FELVD-----YNDVEALEKLLQD----PNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGK 229 (400)
T ss_pred ceEeC-----CCCHHHHHHHhCC----CCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccch
Confidence 11222 2389999999962 57899999999999999988 9999999999999999999975 33211
Q ss_pred ---ccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 279 ---IDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 279 ---id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
.+... ...|++++| |+++++. ++|++++++++ ++.+.....+ . ...
T Consensus 230 ~~~~~~~~---~~pd~~~~s--K~l~~g~~~ig~v~~~~~~--~~~~~~~~~~-~----------------------t~~ 279 (400)
T PTZ00125 230 LLAHDHEG---VKPDIVLLG--KALSGGLYPISAVLANDDV--MLVIKPGEHG-S----------------------TYG 279 (400)
T ss_pred hhHHHhcC---CCCCEEEEc--ccccCCCcCcEEEEEcHHH--HhhccCCCCC-C----------------------CCC
Confidence 11111 145888765 9998764 68999999988 3443221100 0 012
Q ss_pred CChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----CceEEeCCCCCCCcceEEEEeccCCCCCcCCC
Q 038499 355 GTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN----QNIKILGNTSTKRQAILSFNIHSSTINSSLGE 430 (609)
Q Consensus 355 gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~ 430 (609)
++|.......+++.+.. ..+ +.++.+++.+++++.|.++ +.+.... ....++++.+.. +.
T Consensus 280 ~~~~~~~aa~~~l~~i~--~~~---~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~----~~g~~~~v~~~~-~~------ 343 (400)
T PTZ00125 280 GNPLACAVAVEALEVLK--EEK---LAENAQRLGEVFRDGLKELLKKSPWVKEIR----GKGLLNAIVFDH-SD------ 343 (400)
T ss_pred cCHHHHHHHHHHHHHHH--hcC---HHHHHHHHHHHHHHHHHHHHhcCCCeEEEe----cccEEEEEEEcc-Cc------
Confidence 34433333344455432 222 3344555566666665443 3222111 123344443332 10
Q ss_pred CCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHH
Q 038499 431 NTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEE 510 (609)
Q Consensus 431 ~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ee 510 (609)
......+++.|.+ .||.+.++ .++++||++++.++++|
T Consensus 344 --------~~~~~~~~~~l~~-~Gv~v~~~---------------------------------~~~~lRi~~~~~~~~~~ 381 (400)
T PTZ00125 344 --------GVNAWDLCLKLKE-NGLLAKPT---------------------------------HDNIIRFAPPLVITKEQ 381 (400)
T ss_pred --------chHHHHHHHHHHH-CCeEEeec---------------------------------CCCEEEEECCccCCHHH
Confidence 0245678888865 59988742 13789999998999999
Q ss_pred HHHHHHHHHHHHHhc
Q 038499 511 FEFTLEALEFIAIYG 525 (609)
Q Consensus 511 id~ll~al~~v~~~~ 525 (609)
++.++++|..++...
T Consensus 382 i~~~l~~l~~~l~~~ 396 (400)
T PTZ00125 382 LDQALEIIKKVLKSF 396 (400)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
|
|
| >PRK06434 cystathionine gamma-lyase; Validated | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.3e-18 Score=178.29 Aligned_cols=302 Identities=16% Similarity=0.137 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH---
Q 038499 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL--- 195 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--- 195 (609)
.....+++++.++++.|++. .++| +||+ +||+.++..+ +++|| +|+++...|....
T Consensus 62 ~~P~~~~lE~~la~leg~~~--av~~-sSG~-aAi~~al~al---------------l~~GD--~Vl~~~~~yg~t~~~~ 120 (384)
T PRK06434 62 GNPTVQAFEEKYAVLENAEH--ALSF-SSGM-GAITSAILSL---------------IKKGK--RILSISDLYGQTFYFF 120 (384)
T ss_pred CChhHHHHHHHHHHHhCCCc--EEEe-CCHH-HHHHHHHHHH---------------hCCCC--EEEEecCccchHHHHH
Confidence 34557788999999999862 4555 4787 5788776655 47899 6888765444333
Q ss_pred -HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccC
Q 038499 196 -LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 196 -~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~ 274 (609)
......|++++.++.++...++ ++. +++++|++.+++|||+.+.|+++|+++||++| +++|.+++.
T Consensus 121 ~~~~~~~Gi~v~fvd~~~~~~~~-------l~~----~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s 187 (384)
T PRK06434 121 NKVLKTLGIHVDYIDTDRLNSLD-------FDP----SNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFAS 187 (384)
T ss_pred HHHHHhcCcEEEEECCCChhhee-------ecC----CCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCC
Confidence 3345579999999876422222 331 36899999999999999999999999999998 567999877
Q ss_pred CcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 275 PYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 275 ~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
++..-.+. .++|++++|.||+++|+.. .|+++.+++.. .+.+... +.
T Consensus 188 ~~~~~pl~----~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~-~~~~~~~--------------------------~~ 236 (384)
T PRK06434 188 PYNQNPLD----LGADVVIHSATKYISGHSDVVMGVAGTNNKSI-FNNLVER--------------------------RK 236 (384)
T ss_pred cccCCchh----cCCCEEEeecccccCCCCCceEEEEecCcHHH-HHHHHHH--------------------------HH
Confidence 65532232 2789999999999998875 57776654331 1111100 00
Q ss_pred cCCC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------CCCcceEEEEeccCC
Q 038499 353 SGGT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------TKRQAILSFNIHSST 423 (609)
Q Consensus 353 ~~gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------~~r~~~~~f~~~~~~ 423 (609)
..|. .+- ..+++. +.+..-++.+.++..+++..+.+.|+.+|.++ |+-|.- ....++++|.+.. .
T Consensus 237 ~~G~~~~~---~~A~l~--~~gL~tL~~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~-~ 310 (384)
T PRK06434 237 TLGSNPDP---IQAYLA--LRGLKTLGLRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS-M 310 (384)
T ss_pred hcCCCCCH---HHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECC-H
Confidence 0111 111 122221 12334567777888899999999999998874 554421 1245688888753 1
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEE
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRI 500 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRl 500 (609)
.....+.+.| +.+.+.+.-|...+ .|+......+.++... ..|+.++.|||
T Consensus 311 ----------------~~~~~f~~~l-~l~~~~~slG~~~sl~~~p~~~~h~~~~~e~~~---------~~gi~~~liRl 364 (384)
T PRK06434 311 ----------------EDVHKFIRNL-EIPMVAASLGGVESLITLPVETSHSSLSPEERE---------RLGISDNLVRF 364 (384)
T ss_pred ----------------HHHHHHHHhC-CcceEccCCCCCCeeeECCCccccccCCHHHHH---------hcCCCcCeEEE
Confidence 1234455555 44555555554221 1322222223322211 25667899999
Q ss_pred ecCCCCCHHHHHHHHHHHHHH
Q 038499 501 SFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 501 s~~~~~t~eeid~ll~al~~v 521 (609)
|++.- +++.+++-|++.
T Consensus 365 svGlE----d~~dLi~dl~~A 381 (384)
T PRK06434 365 SIGIE----DIDDLIKDIENA 381 (384)
T ss_pred EeCcC----CHHHHHHHHHHH
Confidence 99964 455555555444
|
|
| >PRK01278 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-16 Score=171.70 Aligned_cols=341 Identities=16% Similarity=0.144 Sum_probs=197.9
Q ss_pred CCCccccCCCCCCceEEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..+ .|-..+.|.+++.+++......... .......++.++++++.+.
T Consensus 20 ~~G~~~~d~dG~---~~lD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~la~~l~~~~~~- 88 (389)
T PRK01278 20 GEGVWLIDEDGE---RYLDFASGIAVNSLGHAHPHLVEALKEQAEKLWHVSNL-------YRIPEQERLAERLVENSFA- 88 (389)
T ss_pred eecCEEEECCCC---EEEECCccHhhccCCCCCHHHHHHHHHHHHhcCccccc-------cCChHHHHHHHHHHhhCCC-
Confidence 445555555554 4888765 3567789999999988653211110 1234456777888887753
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCC--ceEEEECCCCccchHHHHHHcCceEEEE----ecC
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE--RWVVFVGPHEHHSNLLSWRQSLAEVVEI----GLD 211 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd--~~~Vlv~~~~h~s~~~~~~~~G~~vv~v----~~~ 211 (609)
++++|+.+|+.+ +..++++.... ...+|+ +..|++....||+....+...+...... +..
T Consensus 89 --~~v~~~~sGseA-~~~al~~ar~~-----------~~~~G~~~r~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~ 154 (389)
T PRK01278 89 --DKVFFTNSGAEA-VECAIKTARRY-----------HYGKGHPERYRIITFEGAFHGRTLATIAAGGQEKYLEGFGPLV 154 (389)
T ss_pred --CEEEEcCCcHHH-HHHHHHHHHHH-----------HHhcCCCCCCEEEEECCCcCCCcHHHHhccCChhhcccCCCCC
Confidence 379999777775 44444332100 023444 3357777777776655554433222111 111
Q ss_pred CCC----CCCHHHHHHHHhhhccCCCceEEEEecccCcccccc----CHHHHHHHHHHhCCeEEEeccccCC-ccc--cc
Q 038499 212 DDG----LLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAASGP-YVE--ID 280 (609)
Q Consensus 212 ~~g----~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~----dl~~I~~la~~~g~~vivD~A~~~~-~~~--id 280 (609)
++. ..|+++++++++ +++++++++.++|++|... .+++|.++|++||+++|+|++++.. ... ..
T Consensus 155 ~~~~~~~~~d~~~l~~~l~-----~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~ 229 (389)
T PRK01278 155 PGFDQVPFGDIEALKAAIT-----PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGMGRTGKLFA 229 (389)
T ss_pred CCceEeCCCCHHHHHHhhC-----CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccee
Confidence 111 258999999997 5799999999999999543 4788999999999999999997732 211 01
Q ss_pred CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc-CCChhH
Q 038499 281 VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES-GGTPQV 359 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~-~gtp~i 359 (609)
..... -..|++ ++.|.+++...+|++++++++ .+.+.....+ .. .+.|..
T Consensus 230 ~~~~~-~~pdi~--t~sK~l~~G~~ig~~~~~~~~--~~~~~~~~~~------------------------~t~~~~~~~ 280 (389)
T PRK01278 230 HEWAG-VTPDIM--AVAKGIGGGFPLGACLATEEA--AKGMTPGTHG------------------------STYGGNPLA 280 (389)
T ss_pred ecccC-CCCCEE--EEehhccCCcceEEEEEcHHH--HhccCCCCCC------------------------CCCCccHHH
Confidence 00110 134655 556999854458999999887 3343221100 11 122322
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
.....+++... +. +...++.+++.+++.++|+. .+++ .... .....++.+.+ .
T Consensus 281 ~aaa~a~l~~l--~~---~~~~~~~~~~~~~l~~~l~~l~~~~~~~--~~~v-~g~G~~~~i~~-~-------------- 337 (389)
T PRK01278 281 MAVGNAVLDVI--LA---PGFLDNVQRMGLYLKQKLEGLVDRFPDV--IEEV-RGKGLLLGLKC-V-------------- 337 (389)
T ss_pred HHHHHHHHHHH--hh---hHHHHHHHHHHHHHHHHHHHHHhhCCCc--eeeE-ecccEEEEEEE-e--------------
Confidence 22233444433 11 12333444444444444433 3322 1110 01222233222 2
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTL 515 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll 515 (609)
.+...+++.|.++ ||.+.++. ++++||++++.+++++++.++
T Consensus 338 ----~~~~~~~~~l~~~-GV~~~p~~---------------------------------~~~lR~~p~~~~~~~~i~~~l 379 (389)
T PRK01278 338 ----VPNRDLVQALRDE-GLLTVGAG---------------------------------DNVVRLLPPLIITEEEIDEAL 379 (389)
T ss_pred ----cCHHHHHHHHHHC-CeEEeecC---------------------------------CCEEEEeCCcccCHHHHHHHH
Confidence 1356788888775 99887431 378999998889999999999
Q ss_pred HHHHHHHHh
Q 038499 516 EALEFIAIY 524 (609)
Q Consensus 516 ~al~~v~~~ 524 (609)
++|+++++.
T Consensus 380 ~~l~~~l~~ 388 (389)
T PRK01278 380 ERLERAAES 388 (389)
T ss_pred HHHHHHHHh
Confidence 999988754
|
|
| >PTZ00376 aspartate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.2e-18 Score=181.30 Aligned_cols=293 Identities=15% Similarity=0.084 Sum_probs=184.9
Q ss_pred HHHHHHHHHHHhC------CCCCCcEEE--eCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 123 VHEASNYIKKCLG------GGQEDAMIF--CGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 123 ~~e~r~~ia~~~g------~~~~~~vif--t~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
..++|+.+++++. .+++ +|++ | .|+++++..+..++. ..+++|| .|++..+.|+.+
T Consensus 74 ~~~lR~aia~~~~~~~~~~~~~~-~v~~~~t-~G~~~al~~~~~~l~------------~~~~~Gd--~Vlv~~P~y~~~ 137 (404)
T PTZ00376 74 LQSFIEAAQKLLFGEASYALAEK-RIATVQA-LSGTGALRLGFEFLK------------RFLPAGT--TVYVSNPTWPNH 137 (404)
T ss_pred CHHHHHHHHHHhcCCCccccccC-eEEEeec-cCcchHHHHHHHHHH------------HhcCCCC--EEEEcCCCchhH
Confidence 4566777777652 2444 6774 5 677777777654321 0147899 799999999999
Q ss_pred HHHHHHcCceEEEEecC--CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEe
Q 038499 195 LLSWRQSLAEVVEIGLD--DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFD 269 (609)
Q Consensus 195 ~~~~~~~G~~vv~v~~~--~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD 269 (609)
...++..|++++.+++. .++.+|++.+++++.+. .++++++++++++||||.+.+. ++|+++|++||+++++|
T Consensus 138 ~~~~~~~G~~~~~v~l~~~~~~~~d~~~l~~~~~~~--~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D 215 (404)
T PTZ00376 138 VNIFKSAGLNVKEYRYYDPKTKGLDFDGMLEDLRTA--PNGSVVLLHACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFD 215 (404)
T ss_pred HHHHHHcCCceeeccccCcccCCcCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 99999999999999983 34789999999998642 1356788899999999999874 56788899999999999
Q ss_pred ccccCCccc------ccCCCCCC-CCccEEEEcCCCCCCCC-CCcEEEE---Eechhhc--cCCCCCCccCCCceEeecc
Q 038499 270 FAASGPYVE------IDVRSGQT-DGYDAIFLSTHKFLGGP-GSPGILL---MTKALYQ--LGSFPPSTCGGGTVNYVNG 336 (609)
Q Consensus 270 ~A~~~~~~~------id~~~~~~-~~~D~v~~S~hK~lggp-~g~G~L~---~~~~~~~--l~~~~p~~~ggg~v~~~~~ 336 (609)
+++..-... ..+..... ...-+++.|++|.++-| ..+|+++ .++++.. +..+...
T Consensus 216 e~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRvG~~~~~~~~~~~~~~l~~~~~~~------------ 283 (404)
T PTZ00376 216 MAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGERIGALHIVCANKEEAANVLSQLKLI------------ 283 (404)
T ss_pred hhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcccccccccceEEEEeCCHHHHHHHHHHHHHH------------
Confidence 996522110 01111100 11247778999999843 4599984 4554310 0111000
Q ss_pred cccccccccccccccccCCC-hhHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeC
Q 038499 337 FNEKDTLYLEDIEERESGGT-PQVIQMIRAALAFWVKEY-------IGHEVIKKQEETYIERALERLLPNQ---NIKILG 405 (609)
Q Consensus 337 ~~~~~~~~~~~~~~r~~~gt-p~i~~~~~aal~~~~~~~-------~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~ 405 (609)
.+...++ +.+.+.+ +..++ ++. ...+.++++.++.++.+.+.|+++. ++.++.
T Consensus 284 -------------~~~~~~~~~~~~q~~--~~~~l-~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~ 347 (404)
T PTZ00376 284 -------------IRPMYSSPPIHGARI--ADRIL-SDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGSPGDWEHII 347 (404)
T ss_pred -------------HhhhcCCCchHHHHH--HHHHh-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccccc
Confidence 0001112 2233321 11111 110 0123445566777888888887652 233333
Q ss_pred CCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHH
Q 038499 406 NTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSA 485 (609)
Q Consensus 406 ~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~ 485 (609)
+ ..+.+.|.-. ..++++.|.+++||.+.+
T Consensus 348 p----~gg~f~~~~~---------------------~~~~~~~L~~~~~v~v~p-------------------------- 376 (404)
T PTZ00376 348 N----QIGMFSFTGL---------------------TKEQVERLIEKYHIYLLD-------------------------- 376 (404)
T ss_pred c----CceEEEecCC---------------------CHHHHHHHHHhCCEeecC--------------------------
Confidence 2 3344444322 246677787878998762
Q ss_pred HhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 486 IQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 486 ~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+. |||++. .+.++++.++++|+.++..
T Consensus 377 ----------~~-Ris~~~-~~~~~~~~~~~~l~~~~~~ 403 (404)
T PTZ00376 377 ----------NG-RISVAG-LTSKNVDYVAEAIHDVVRN 403 (404)
T ss_pred ----------CC-eEEEec-cCHHhHHHHHHHHHHHHhc
Confidence 33 999954 6899999999999988653
|
|
| >KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=160.71 Aligned_cols=395 Identities=17% Similarity=0.163 Sum_probs=272.5
Q ss_pred HHHHHHHHHhhccCCC-cccc--CC---CCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHH-HHH
Q 038499 51 SEKKLTWLQSQIIGKN-AEFD--SP---FGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTT-NMV 123 (609)
Q Consensus 51 ~~~~~~~~r~~~~g~~-~~~~--~p---~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~-~~~ 123 (609)
.++.++.+|+.|.... ..+. +| .-..+.||+=.++.|..|..+.+.+.+++.. |+.-....+..|...+ ..-
T Consensus 35 ~~d~l~~~Rd~F~iPk~~~lp~~d~sLv~~d~~~iYlcGNSLGLmPK~t~~~~~~eLDk-Wak~av~gH~~GkvPW~~~D 113 (465)
T KOG3846|consen 35 GSDYLESLRDEFNIPKFKSLPDADPSLVSDDKPVIYLCGNSLGLMPKSTRNSINAELDK-WAKCAVEGHFKGKVPWVSID 113 (465)
T ss_pred cchhHHHHHHHhcCCccccCCCCCccccCCCCCeEEEeccccccCchhhHhHHHHHHHH-HHhhhhhcccccccceeecc
Confidence 3578899999985321 0000 11 1235789999999999999999998877754 3333332233343322 222
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccc----hHHHH
Q 038499 124 HEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHS----NLLSW 198 (609)
Q Consensus 124 ~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s----~~~~~ 198 (609)
+-.-..++..+|+..+ +|.++ +.-|.+++.++..+- +|. .|..|+...-.++| ....+
T Consensus 114 e~il~l~~~iVGA~e~-Evavm-NsLTvNlh~Ll~sFy---------------KPTekR~KILlE~kaFPSDhYAiesQ~ 176 (465)
T KOG3846|consen 114 EPILPLLAPIVGAQEN-EVAVM-NSLTVNLHSLLISFY---------------KPTEKRFKILLEKKAFPSDHYAIESQC 176 (465)
T ss_pred hhhhhhhhhhccCCch-hhhhH-hhhhhHHHHHHHHhc---------------CCcchhhhhhhccCCCCchHHHHHhhh
Confidence 3456778999999987 89888 788889998877662 333 34457766555554 44555
Q ss_pred HHcCceE--EEEecCC---CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecccc
Q 038499 199 RQSLAEV--VEIGLDD---DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 199 ~~~G~~v--v~v~~~~---~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~ 273 (609)
+..|..+ ..+-+.+ ...+..+++.+.|.+. .+...+|+|+.++..||...|+.+|...-+..|+++-+|-||+
T Consensus 177 ~lhG~~~e~sm~~iePREGEetlRteDILd~IEkn--gDeiA~v~fSGvqyYTGQ~Fdi~aIT~Agq~kgc~VGfDLAHA 254 (465)
T KOG3846|consen 177 KLHGISPENSMIQIEPREGEETLRTEDILDTIEKN--GDEIALVCFSGVQYYTGQYFDIGAITFAGQFKGCLVGFDLAHA 254 (465)
T ss_pred hhcCCChHHheEEecccccccchhHHHHHHHHHhc--CCeEEEEEeecceeecccccchhhhhhcccCCCcEechhhhhh
Confidence 6667653 2222222 3357778888888753 2567799999999999999999999965556799999999999
Q ss_pred CCcccccCCCCCCCCccEEEEcCCCCC-CCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 274 GPYVEIDVRSGQTDGYDAIFLSTHKFL-GGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 274 ~~~~~id~~~~~~~~~D~v~~S~hK~l-ggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
++.+++.+..+ ++|+.+...+|++ .|++|+|-+.+..+. .....|...||.......+|..+....+....-.+
T Consensus 255 vgNVpL~LHdW---gVDFACWCSYKYlnaGaGgIgGlFvHekh--~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~Gf 329 (465)
T KOG3846|consen 255 VGNVPLQLHDW---GVDFACWCSYKYLNAGAGGIGGLFVHEKH--TKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGF 329 (465)
T ss_pred hcCCceEEeec---CCceEEEeeecccccCCCccceeeeehhh--hcchhhHHhhhccCCcchhhhhccccccCcccccc
Confidence 99999998887 9999999999998 457889999999888 55677777787555555555555555566666777
Q ss_pred cCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc-----------eEEeCCCC-CCCcceEEEE
Q 038499 353 SGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN-----------IKILGNTS-TKRQAILSFN 418 (609)
Q Consensus 353 ~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~-----------i~v~~~~~-~~r~~~~~f~ 418 (609)
+...|++...+ ++++++. .+..++.++.+..-+..|+...++...| +.|+.|.. ..|..-+++.
T Consensus 330 RiSNPpi~~v~al~~SLe~F--~q~~~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~ 407 (465)
T KOG3846|consen 330 RISNPPIIDVVALRSSLELF--AQFNINELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLY 407 (465)
T ss_pred ccCCCcHhHHHHHHhhHHHH--HHhhHHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEE
Confidence 77888876654 5566655 5566888888877777766665554322 33444432 2333333333
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEE
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWT 498 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~i 498 (609)
... ....|...|.+ .|+..- ..+|+.|
T Consensus 408 Fss-------------------p~~~vfqeL~k-rGv~~D---------------------------------kR~PNvI 434 (465)
T KOG3846|consen 408 FSS-------------------PTPKVFQELHK-RGVIGD---------------------------------KRRPNVI 434 (465)
T ss_pred eCC-------------------CchHHHHHHHH-cCeecc---------------------------------ccCCCce
Confidence 322 23567777755 365432 1158999
Q ss_pred EEec-CCCCCHHHHHHHHHHHHHHHHhc
Q 038499 499 RISF-PYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 499 Rls~-~~~~t~eeid~ll~al~~v~~~~ 525 (609)
|+.. +.|||..|+-.++.+|.+++...
T Consensus 435 RvAPvpLYN~f~Dvy~f~n~L~e~~d~~ 462 (465)
T KOG3846|consen 435 RVAPVPLYNTFSDVYIFVNALNEAMDKL 462 (465)
T ss_pred EeecchhhccHHHHHHHHHHHHHHHHHh
Confidence 9996 89999999999999999988654
|
|
| >COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.7e-17 Score=161.50 Aligned_cols=325 Identities=19% Similarity=0.191 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH---
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS--- 197 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--- 197 (609)
.....++++|+.+-|.-.. +.+ .||..+....++.+ .++|| .|+.++.-|......
T Consensus 62 PT~~vlE~RiAaLEGG~aa--~a~-aSG~AA~~~ai~~l----------------a~aGD--~iVss~~LYGGT~~lf~~ 120 (426)
T COG2873 62 PTTDVLEERIAALEGGVAA--LAV-ASGQAAITYAILNL----------------AGAGD--NIVSSSKLYGGTYNLFSH 120 (426)
T ss_pred chHHHHHHHHHHhhcchhh--hhh-ccchHHHHHHHHHh----------------ccCCC--eeEeeccccCchHHHHHH
Confidence 3456688899999887543 444 47776544444333 37999 788888877765543
Q ss_pred -HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 198 -WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 198 -~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
++..|.++++|+.+ |++.++++|+ ++||+|++....||-+.+.|+++|+++||++|++++||.+-+.|+
T Consensus 121 tl~~~Gi~v~fvd~~-----d~~~~~~aI~-----~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpy 190 (426)
T COG2873 121 TLKRLGIEVRFVDPD-----DPENFEAAID-----ENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPY 190 (426)
T ss_pred HHHhcCcEEEEeCCC-----CHHHHHHHhC-----cccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCcce
Confidence 46789999999865 7999999999 799999999999999999999999999999999999999988876
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCC-cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGS-PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG 355 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~g 355 (609)
.--.++ .|+|+|+-|..||+||-+. +|-+++.-..+.... ...++. +...+..|.. ....+..|
T Consensus 191 l~rP~~----hGADIVvHS~TK~igGhGt~iGG~iVD~G~FDw~~-~~rfP~---------~~~p~p~YhG-l~~~~~~g 255 (426)
T COG2873 191 LCRPIE----HGADIVVHSATKYIGGHGTAIGGVIVDGGKFDWTA-NGRFPE---------FTTPDPSYHG-LVYTETFG 255 (426)
T ss_pred ecchhh----cCCCEEEEeecccccCCccccceEEEeCCcccccc-CCCCcc---------cCCCCccccc-eehhhhcc
Confidence 543333 2899999999999998753 666666544421110 000000 0111111110 01111223
Q ss_pred ChhHHHHHHHH------------HHHHHHHhcCHH---HHHHHHHHHHHHHHHHhCCCCceEEeCCCC------------
Q 038499 356 TPQVIQMIRAA------------LAFWVKEYIGHE---VIKKQEETYIERALERLLPNQNIKILGNTS------------ 408 (609)
Q Consensus 356 tp~i~~~~~aa------------l~~~~~~~~g~~---~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~------------ 408 (609)
.+.+.-.++.- -+|++ ..|.| -..+|..+++..+.+.|.++|.+.-+.-..
T Consensus 256 ~~af~~~~r~~~lRDlGa~lsPfnAfl~--lqGlETL~LRmerH~~NA~~vA~~L~~HpkV~~V~YpgL~~~~~h~la~k 333 (426)
T COG2873 256 NAAFIIKARVQLLRDLGATLSPFNAFLL--LQGLETLSLRMERHCENALKVAEFLENHPKVAWVNYPGLASHPYHALAKK 333 (426)
T ss_pred cHHHHHHHHHHHHHhcccccCcHHHHHH--HhchhhhHHHHHHHHHhHHHHHHHHhcCCCeeeeecCCCCCCcchhHHHh
Confidence 33322211100 11221 23444 345677778889999999988775432211
Q ss_pred ---CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHH
Q 038499 409 ---TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQI 482 (609)
Q Consensus 409 ---~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~ 482 (609)
....++++|-+.+ +. -....++..| +++--.+.-|..-+ +|.+.....+++++..
T Consensus 334 yl~~g~g~vltF~~kg-g~---------------ea~~~fi~~l-~L~s~laNvGD~rsLvIHPAsTTH~ql~~ee~~-- 394 (426)
T COG2873 334 YLPKGAGAVLTFGVKG-GY---------------EAGKKFIDAL-KLFSHLANIGDARSLVIHPASTTHRQLSEEEQA-- 394 (426)
T ss_pred hccCCCceEEEEEecC-hH---------------HHHHHHHHHH-HHHHhhccccccceeEecCcccchhcCCHHHHH--
Confidence 1234588888887 32 1234454444 33333344343211 2434333444443322
Q ss_pred HHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 483 RSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 483 ~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
-.|+.|+.||+|++. |+++.+++-|+..++
T Consensus 395 -------~aGv~~~~IRlSVGI----Ed~~DiiaDl~qAl~ 424 (426)
T COG2873 395 -------AAGVTPDLIRLSVGI----EDIDDIIADLEQALE 424 (426)
T ss_pred -------hcCCCCCcEEEEecc----CCHHHHHHHHHHHHh
Confidence 257889999999985 667777777776554
|
|
| >cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes | Back alignment and domain information |
|---|
Probab=99.79 E-value=4e-18 Score=159.80 Aligned_cols=166 Identities=20% Similarity=0.243 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHc
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQS 201 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~ 201 (609)
+.++++.++++++.+.+ .++++. |+++++..++..+. ++++ .|+++...|++.. ..+...
T Consensus 2 ~~~~~~~l~~~~~~~~~-~~~~~~-~~t~a~~~~~~~~~---------------~~~~--~v~~~~~~~~~~~~~~~~~~ 62 (170)
T cd01494 2 LEELEEKLARLLQPGND-KAVFVP-SGTGANEAALLALL---------------GPGD--EVIVDANGHGSRYWVAAELA 62 (170)
T ss_pred HHHHHHHHHHHcCCCCC-cEEEeC-CcHHHHHHHHHHhC---------------CCCC--EEEEeecccceehhhHHHhc
Confidence 46789999999975554 788884 66678888887763 4566 6999999999988 777888
Q ss_pred CceEEEEecCCCCCCCH--HHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccc
Q 038499 202 LAEVVEIGLDDDGLLDI--EALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 202 G~~vv~v~~~~~g~ld~--e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~i 279 (609)
|++++.++.+.++..+. +.+++.... ++++++++++++|++|...|+++|.++|+++|+++|+|++++.+....
T Consensus 63 g~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~ 138 (170)
T cd01494 63 GAKPVPVPVDDAGYGGLDVAILEELKAK----PNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPA 138 (170)
T ss_pred CCEEEEeccCCCCccchhhhhhhhcccc----CceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccc
Confidence 99999999876554333 255444332 688999999999999999999999999999999999999999877665
Q ss_pred cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 280 DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
........++|+++.|+||++|+ .+.|++++|
T Consensus 139 ~~~~~~~~~~d~~~~s~~K~~~~-~~~G~l~~~ 170 (170)
T cd01494 139 PGVLIPEGGADVVTFSLHKNLGG-EGGGVVIVK 170 (170)
T ss_pred cccccccccCCEEEEEcccccCC-CceEEEEeC
Confidence 22111123789999999999998 568999875
|
PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis |
| >COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-16 Score=162.71 Aligned_cols=341 Identities=20% Similarity=0.189 Sum_probs=219.0
Q ss_pred ccCCCCCCc-hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeC-ChHHHHHHHH--HHHhcccchhhHHHHHHhhhcCCC
Q 038499 105 YGNTHTCDS-YVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCG-SGTTAAIKRL--QEVMGIAVPSILREKLIKCLRDEE 180 (609)
Q Consensus 105 ~~n~~~~~~-~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~-sGttaal~~l--~~~l~~~~~~~~~~~~~~~l~~gd 180 (609)
++|.|.-.. ..-.+..+++.++++++++..|.+ +|.+.. +|+..=..-+ ++.+.. .-..+.
T Consensus 92 f~~iHP~~pe~~vqG~l~li~~Lq~~L~~ITG~D---avsLQP~AGAqGE~aGll~Ir~YHe------------~rG~~~ 156 (496)
T COG1003 92 FANIHPFQPEEQVQGYLELIYELQEWLKEITGMD---AVSLQPNAGAQGEYAGLLAIRAYHE------------SRGEGH 156 (496)
T ss_pred hhhcCCCCChHHHHHHHHHHHHHHHHHHHhcCCc---eeeccCCCCcchhhHHHHHHHHHHH------------HcCCCc
Confidence 456555321 123356788999999999999985 555543 3554422222 122210 012445
Q ss_pred ceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccc-cCHHHHHHHH
Q 038499 181 RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY-SDTRSIARLL 259 (609)
Q Consensus 181 ~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~-~dl~~I~~la 259 (609)
|.+|++++..|..|-.++...|.+|+.|+.+++|.+|+++|++++. +++..+.+++||+ .|+. .++.+|+++.
T Consensus 157 R~~~LIP~SAHGTNPASAam~G~~VV~V~~~~~G~VDlddLk~k~~-----~~~AalMiTnPsT-~GvFE~~I~ei~~iv 230 (496)
T COG1003 157 RNICLIPDSAHGTNPASAAMAGFKVVVVKCDENGNVDLDDLRAKAE-----DNLAALMITNPST-LGVFEEDIREICEIV 230 (496)
T ss_pred CcEEEeeccccCCChhhHhhcCceEEEEecCCCCCccHHHHHHHhc-----cceeEEEeccCcc-cccchhhHHHHHHHH
Confidence 6799999999999999999999999999999999999999999998 6888889988865 4777 6799999999
Q ss_pred HHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCC-----CCcEEEEEechhhccCCCCCCccCCCceEee
Q 038499 260 HQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGP-----GSPGILLMTKALYQLGSFPPSTCGGGTVNYV 334 (609)
Q Consensus 260 ~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp-----~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~ 334 (609)
|++|..+..|+|..-..+.+ .+++. -|.|++-++.||.|..| .|.|-+.+++.+ .. +.++--. ..
T Consensus 231 H~~Gg~vY~DGANlNA~vG~-~rPGd-~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L--~p----fLP~p~~-~~- 300 (496)
T COG1003 231 HEAGGQVYYDGANLNAIVGL-ARPGD-MGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHL--AP----FLPGPVV-YH- 300 (496)
T ss_pred HHcCCEEEecCcchhhhhcc-ccccc-cccceEEeecccccccCCCCCCCCCCceehHhhc--cc----cCCCCcc-cC-
Confidence 99999999999954222211 11211 17899999999999544 236778888777 22 2222100 00
Q ss_pred ccccccccccccc-------ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCC
Q 038499 335 NGFNEKDTLYLED-------IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNT 407 (609)
Q Consensus 335 ~~~~~~~~~~~~~-------~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~ 407 (609)
....|..+ ....--.|+..++....+-+... ...|....-+...-+++|+.++|+. .+.++-..
T Consensus 301 -----~~~~y~~~~~~~~s~g~~~a~~Gs~~il~~a~~YI~~m--G~~GL~~ase~AvLNANYia~rL~~--~y~~~y~~ 371 (496)
T COG1003 301 -----DVGEYRLDYDGKKSIGVSAAPYGSASILPIAWAYIRMM--GADGLKQASEVAVLNANYIARRLKG--YYPVPYTG 371 (496)
T ss_pred -----CCccccccCCCCccceeeccccCcchHHHHHHHHHHHH--hHHHHHHHHHHHHHhHHHHHHHhhh--cCccccCC
Confidence 00011100 01112234445544433332222 3446666666667789999999986 45553322
Q ss_pred CCCCcce-EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHH
Q 038499 408 STKRQAI-LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAI 486 (609)
Q Consensus 408 ~~~r~~~-~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~ 486 (609)
. .+..+ +.+...+ . ..+.++...+|+++|.| ||+-.-.-.+. | -
T Consensus 372 ~-~~~~HE~ild~r~--l----------~~~~Gv~~~DvAKrLlD-~GfHaPT~~FP-------l-i------------- 416 (496)
T COG1003 372 E-NRVAHECILDARP--L----------KKETGVRALDVAKRLLD-YGFHAPTMYFP-------L-I------------- 416 (496)
T ss_pred C-CcceeEEEeechH--h----------HhhcCCcHHHHHHHHHh-cCCCCCcccCc-------c-c-------------
Confidence 1 12222 2222222 1 13445889999999998 79865433221 0 0
Q ss_pred hhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 487 QKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 487 ~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
-++.+-|=..-.-|++|+|++++++..++++...
T Consensus 417 -------V~~tLMIEPTEsEsk~eLDrf~dami~I~~Ea~~ 450 (496)
T COG1003 417 -------VAGTLMIEPTESESKEELDRFIDAMIAIREEADA 450 (496)
T ss_pred -------cccceeecCCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 1467777777778999999999999999987654
|
|
| >PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.5e-17 Score=173.19 Aligned_cols=312 Identities=20% Similarity=0.197 Sum_probs=190.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc
Q 038499 114 YVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS 193 (609)
Q Consensus 114 ~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s 193 (609)
.+++........+++.|+++.|+. .++.++||.. ||..++..+ +++|| .|+++...|..
T Consensus 48 ~Y~R~gnPt~~~le~~la~Le~g~---~a~~~~SGma-Ai~~~l~~l---------------l~~Gd--~iv~~~~~Y~~ 106 (386)
T PF01053_consen 48 IYSRYGNPTVRALEQRLAALEGGE---DALLFSSGMA-AISAALLAL---------------LKPGD--HIVASDDLYGG 106 (386)
T ss_dssp SBTTTC-HHHHHHHHHHHHHHT-S---EEEEESSHHH-HHHHHHHHH---------------S-TTB--EEEEESSSSHH
T ss_pred ceeccccccHHHHHHHHHHhhccc---ceeeccchHH-HHHHHHHhh---------------cccCC--ceEecCCccCc
Confidence 345555666788999999999984 3444457777 565555544 47898 68888888877
Q ss_pred hHHHHH----HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhC-CeEEE
Q 038499 194 NLLSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYG-GFACF 268 (609)
Q Consensus 194 ~~~~~~----~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g-~~viv 268 (609)
....++ ..|+++.+++.. |+++|+++++ +++++|++..++||+..+.|+++|+++||++| ++++|
T Consensus 107 t~~~~~~~l~~~gv~v~~~d~~-----d~~~l~~~l~-----~~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vV 176 (386)
T PF01053_consen 107 TYRLLEELLPRFGVEVTFVDPT-----DLEALEAALR-----PNTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVV 176 (386)
T ss_dssp HHHHHHHCHHHTTSEEEEESTT-----SHHHHHHHHC-----TTEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEE
T ss_pred chhhhhhhhcccCcEEEEeCch-----hHHHHHhhcc-----ccceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEe
Confidence 665544 469999998754 8999999999 68999999999999999999999999999999 99999
Q ss_pred eccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEec--hhhccCCCCCCccCCCceEeecccccccccc
Q 038499 269 DFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTK--ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 269 D~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~--~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
|.+.+.|+. .+++. .|+|+++.|..|+++|... .|+++++. +++ +.+..
T Consensus 177 DnT~atp~~---~~pL~-~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~--~~l~~--------------------- 229 (386)
T PF01053_consen 177 DNTFATPYN---QNPLE-LGADIVVHSATKYLSGHSDVMGGAVVVNGSSELY--DRLRE--------------------- 229 (386)
T ss_dssp ECTTTHTTT---C-GGG-GT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHH--HHHHH---------------------
T ss_pred eccccceee---eccCc-CCceEEEeeccccccCCcceeeEEEEECchhhhh--hhhcc---------------------
Confidence 999876643 22221 2799999999999997753 57888776 331 11100
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CC
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TK 410 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~ 410 (609)
..+....+.+-.. +- +.+.....+....++..+.+..+.+.|+++|.++ |+-|. + ..
T Consensus 230 ----~~~~~G~~~~p~d---a~--ll~rgl~Tl~~R~~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g 300 (386)
T PF01053_consen 230 ----FRRLLGATLSPFD---AW--LLLRGLRTLPLRMERQNENAEALAEFLEEHPKVKRVYYPGLPSHPQHELAKRQMSG 300 (386)
T ss_dssp ----HHHHHT-B--HHH---HH--HHHHHHTTHHHHHHHHHHHHHHHHHHHHTSTTEEEEEETTSTTSTTHHHHHHHCSS
T ss_pred ----hhhhcCccchHHH---HH--HHhcCCCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcccccccceeeeeecccc
Confidence 0011111111111 11 1111223455666777888999999999999886 65442 1 12
Q ss_pred CcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHh
Q 038499 411 RQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQ 487 (609)
Q Consensus 411 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~ 487 (609)
..++++|.+.. +. -....+.+.| +.+.+.+.-|...+ .|.......+.++...
T Consensus 301 ~ggl~sf~l~~-~~---------------~~~~~f~~~l-~l~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~------- 356 (386)
T PF01053_consen 301 GGGLLSFELKG-GE---------------EAARRFLDAL-KLFSIAPSLGGVESLISHPASTSHRSLSPEERA------- 356 (386)
T ss_dssp CTSEEEEEESS-HH---------------HHHHHHHHH--SSSEESSS-SSSS-EEEETTCTTTTTSCHHHHH-------
T ss_pred cCceeEEEecc-ch---------------hhhHhHHhhh-hhHhhhhhcCCcccccccccchhhccCChhhhh-------
Confidence 44688998886 21 0234555555 44555555554332 1322222233332211
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 488 KGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 488 ~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
..|+.++.||||+|. |+.+.+++.|+..+
T Consensus 357 --~~Gi~~~liRlSvGl----Ed~~dLi~Dl~~AL 385 (386)
T PF01053_consen 357 --EAGISDGLIRLSVGL----EDPDDLIADLEQAL 385 (386)
T ss_dssp --HTTS-TTEEEEE--S----S-HHHHHHHHHHHH
T ss_pred --ccCCCCCeeEEEecc----CCHHHHHHHHHHhc
Confidence 146678999999996 45555666555543
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B .... |
| >COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3e-17 Score=165.57 Aligned_cols=300 Identities=15% Similarity=0.108 Sum_probs=193.7
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 116 GQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 116 ~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
.++..+..+++++++++.+|. . +++|+.+||.++.-.+... .+|++ .|++.+..|-...
T Consensus 30 ~YG~D~~~~~~e~~~ae~~g~--~-a~~Fv~sGT~aN~lal~~~----------------~~~~~--~vi~~~~aHi~~~ 88 (342)
T COG2008 30 VYGEDPTTNALEQRIAELFGK--E-AALFVPSGTQANQLALAAH----------------CQPGE--SVICHETAHIYTD 88 (342)
T ss_pred CCCCCHHHHHHHHHHHHHhCC--c-eEEEecCccHHHHHHHHHh----------------cCCCC--eEEEeccccceec
Confidence 344566788999999999999 3 6889989998765555433 37888 6999998887654
Q ss_pred HH--HHH-cCceEEEEecCCCCCCCHHHHHHHHhhhc--cCCCceEEEEecccCccccccCHH---HHHHHHHHhCCeEE
Q 038499 196 LS--WRQ-SLAEVVEIGLDDDGLLDIEALRSKLELYK--DAKRPILGSFSACSNVTGIYSDTR---SIARLLHQYGGFAC 267 (609)
Q Consensus 196 ~~--~~~-~G~~vv~v~~~~~g~ld~e~L~~al~~~~--~~~~~~lv~~s~~sn~TG~~~dl~---~I~~la~~~g~~vi 267 (609)
.. ... .++....+....+|.+++++++++|.... +.+.++++++ +..|.-|.++|++ +|.++||+||+.++
T Consensus 89 E~Ga~~~~~~~~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e-~~~te~GtVy~l~el~~i~~~~k~~~l~LH 167 (342)
T COG2008 89 ECGAPEFFGGGQKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLE-NTATEGGTVYPLDELEAISAVCKEHGLPLH 167 (342)
T ss_pred ccCcHHHHcCCceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEe-eccCCCceecCHHHHHHHHHHHHHhCCcee
Confidence 21 122 23333334445689999999999987521 2233445444 4445779999865 57888999999999
Q ss_pred Eeccc---cCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 268 FDFAA---SGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 268 vD~A~---~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
.|+|- +.....++...+ ..++|+++++++|.+|.|.| .+|+.+.++. +.....
T Consensus 168 mDGAR~~nA~valg~~~~~~-~~~~D~v~~~~tK~g~~~~g-Aiv~gn~~~~--~~a~~~-------------------- 223 (342)
T COG2008 168 MDGARLANALVALGVALKTI-KSYVDSVSFCLTKGGGAPVG-AIVFGNRDFA--KRARRW-------------------- 223 (342)
T ss_pred echHHHHHHHHHcCCCHHHH-HhhCCEEEEecccCCcceee-eEEEcCHHHH--HHHHHH--------------------
Confidence 99982 221222332222 23789999999999998875 8888888883 222110
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCC
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~ 424 (609)
++..+|-..-..++.+.....+++.. ......+..+++.++.+.+...||+++..+. -.+..|...+ .
T Consensus 224 -----rK~~Ggl~~k~r~laA~~~~~l~~~~-~~~~~~Han~mA~~La~~~~~~~G~~~~~~~----~tN~vf~~l~-~- 291 (342)
T COG2008 224 -----RKRAGGLMRKARFLAAQGLYALEDDV-WRLAADHANAMAARLAEGLEAKPGVKLAFPV----ETNMVFVRLP-E- 291 (342)
T ss_pred -----HHHhcccHhhhhHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHhhhhcCCceeccCC----cccEEEEECC-h-
Confidence 11112222223344444444444332 4455667777899999999988999998763 2455566555 1
Q ss_pred CCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCC-cEEEEecC
Q 038499 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKP-GWTRISFP 503 (609)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~-g~iRls~~ 503 (609)
...+.|.. .|+....|. +.+ .. ..+|+..+
T Consensus 292 -------------------~~i~~l~~-~~~~~~~~~---------~~~--------------------~~~~~vRfvts 322 (342)
T COG2008 292 -------------------SAIEALRL-AGALFYRGV---------LIG--------------------AHGEIVRFVTS 322 (342)
T ss_pred -------------------HHHHHHHh-hchhheeee---------ecc--------------------CCCceEEEEee
Confidence 12234422 244433211 100 01 26999999
Q ss_pred CCCCHHHHHHHHHHHHHHH
Q 038499 504 YYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 504 ~~~t~eeid~ll~al~~v~ 522 (609)
+-+|+++++.++..++.++
T Consensus 323 ~a~~~edv~~~~~~~~~~~ 341 (342)
T COG2008 323 WATSEEDVDELVAAIKALL 341 (342)
T ss_pred ccCCHHHHHHHHHHHHHhh
Confidence 9999999999999998865
|
|
| >TIGR00707 argD acetylornithine and succinylornithine aminotransferases | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.7e-17 Score=171.84 Aligned_cols=339 Identities=16% Similarity=0.145 Sum_probs=195.8
Q ss_pred CccccCCCCCCceEEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 038499 66 NAEFDSPFGKRRLTYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE 139 (609)
Q Consensus 66 ~~~~~~p~g~~~~vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~ 139 (609)
+.++....|+ -|+|..+ .|..++.|.+++.+.+.... .... . .......++++++++++|.+
T Consensus 18 g~~~~~~~g~---~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~~~-~~~~----~--~~~~~~~~l~~~la~~~g~~-- 85 (379)
T TIGR00707 18 GAYVYDVNGK---EYLDFVAGIAVNSLGHAHPKLVEALKEQLEKLV-HVSN----L--YYTEPQEELAEKLVEHSGAD-- 85 (379)
T ss_pred cCEEEeCCCC---EEEEcCcchhhccCCCCCHHHHHHHHHHHhhcc-cccc----c--cCCHHHHHHHHHHHhhCCCC--
Confidence 3444444453 2666544 35666889999988876531 1111 0 12356788999999999874
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhc-CCCceEEEECCCCccchHHHHHHcCceEE----EEecCCCC
Q 038499 140 DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLR-DEERWVVFVGPHEHHSNLLSWRQSLAEVV----EIGLDDDG 214 (609)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~-~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv----~v~~~~~g 214 (609)
+++++.+| ++++..+++++.... ...+ +++ .|++.+..||.........+.... ..+...+.
T Consensus 86 -~~~~~~sg-~~a~~~a~~~~~~~~---------~~~~~~~~--~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (379)
T TIGR00707 86 -RVFFCNSG-AEANEAALKLARKYT---------GDKGKEKK--KIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGF 152 (379)
T ss_pred -EEEEeCCc-HHHHHHHHHHHHHHh---------hccCCCCC--eEEEECCCcCCccHHHHHhcCChhhhccCCCCCCCc
Confidence 67887445 445665555432000 0001 245 466666666654433333333221 12222221
Q ss_pred C----CCHHHHHHHHhhhccCCCceEEEEecccCcccccc-C---HHHHHHHHHHhCCeEEEecccc-CCccc--ccCCC
Q 038499 215 L----LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYS-D---TRSIARLLHQYGGFACFDFAAS-GPYVE--IDVRS 283 (609)
Q Consensus 215 ~----ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~-d---l~~I~~la~~~g~~vivD~A~~-~~~~~--id~~~ 283 (609)
. -|+++|++.++ ++++++++++++|++|... + +++|.++|++||+++++|++++ .+... ..+..
T Consensus 153 ~~~~~~d~~~l~~~~~-----~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~~~~~~g~~~~~~~ 227 (379)
T TIGR00707 153 SYAPYNDIESLKKAID-----DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFAYEH 227 (379)
T ss_pred eeeCCCCHHHHHHHhh-----hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhhhHHh
Confidence 1 18999999997 5789999988888888753 3 7899999999999999999976 32211 11111
Q ss_pred CCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH
Q 038499 284 GQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI 363 (609)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~ 363 (609)
. ....|++ +++|.++++.++|++++++++ ++.+.+...+ ..+ .+.+.....+
T Consensus 228 ~-~~~~d~~--t~sK~~~~G~riG~~~~~~~~--~~~~~~~~~~----------------------~~~-~~~~~~~~aa 279 (379)
T TIGR00707 228 Y-GIEPDII--TLAKGLGGGVPIGATLAKEEV--AEAFTPGDHG----------------------STF-GGNPLACAAA 279 (379)
T ss_pred c-CCCCCEE--EEcccccCCcccEEEEEcHHH--HhhhcCCCCC----------------------CCC-CCCHHHHHHH
Confidence 1 0134655 457999955569999999887 4444321100 000 1222222223
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChH
Q 038499 364 RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGP 443 (609)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (609)
.+++... + ...+.++.++++++++++|.++ +.......-.....++++.+.. ...
T Consensus 280 ~aaL~~~--~---~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~g~~~~~~~~~-------------------~~~ 334 (379)
T TIGR00707 280 LAVLEVI--E---KERLLENVKEKGDYFKERLEEL-GKNYPNKEVRGKGLMLGIELEA-------------------PCK 334 (379)
T ss_pred HHHHHHH--H---hhhHHHHHHHHHHHHHHHHHHH-HhhCCCCccccCceEEEEEecC-------------------cHH
Confidence 3444432 1 1235566666777777766543 1111001000122334443322 256
Q ss_pred HHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 444 FVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 444 ~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.+.+.|.+ .||.++++ .++++|+++++..|++++++++++|+++
T Consensus 335 ~~~~~l~~-~Gv~v~~~---------------------------------~~~~lRi~~~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 335 DIVKKALE-KGLLVNCA---------------------------------GPKVLRFLPPLIITKEEIDEAVSALEEA 378 (379)
T ss_pred HHHHHHHH-CCcEEeeC---------------------------------CCCEEEEECCCcCCHHHHHHHHHHHHHh
Confidence 78888865 69998842 1378999999889999999999999875
|
Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097) |
| >KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-17 Score=158.61 Aligned_cols=335 Identities=18% Similarity=0.153 Sum_probs=233.1
Q ss_pred eEEecCCCCCCC-hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 78 LTYADHTASGRS-LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 78 ~vyld~~a~g~~-~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+-|+-|+..|.+ .+.|.++-++.+.++-+.+.+.. .-.++..+...+++.||++.+.+ |.|++ .++-.++...+
T Consensus 70 lnFcaNnYLGLsshPeii~a~~~aleeyGaGlssvr--fIcGtq~iHk~LE~kiAqfh~rE--D~ily-pscfdANag~f 144 (417)
T KOG1359|consen 70 LNFCANNYLGLSSHPEIINAGQKALEEYGAGLSSVR--FICGTQDIHKLLESKIAQFHGRE--DTILY-PSCFDANAGAF 144 (417)
T ss_pred eeecccccccccCChHHHHHHHHHHHHhCCCcccee--EEecchHHHHHHHHHHHHHhCCC--ceEEe-ccccccchHHH
Confidence 344545555544 46788888888877655454432 33346778889999999999976 34555 47777655544
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceE
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPIL 236 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~l 236 (609)
..+ +.|.| .|+.....|.|.+...+... ..+++|+-+|+..+.+... .+-++
T Consensus 145 eai----------------l~ped--AvfSDeLNhASIIdGirLck---------ry~h~dv~~l~~~l~~a~k-~r~kl 196 (417)
T KOG1359|consen 145 EAI----------------LTPED--AVFSDELNHASIIDGIRLCK---------RYRHVDVFDLEHCLISACK-MRLKL 196 (417)
T ss_pred HHh----------------cChhh--hhhccccccchhhhhhHHHh---------hhccchhHHHHHHHHHhhh-heEEE
Confidence 333 35777 69999999999988776432 3456788888877764211 36789
Q ss_pred EEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCC---CC--CCCCccEEEEcCCCCCCCCCCcEEEEE
Q 038499 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVR---SG--QTDGYDAIFLSTHKFLGGPGSPGILLM 311 (609)
Q Consensus 237 v~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~---~~--~~~~~D~v~~S~hK~lggp~g~G~L~~ 311 (609)
|+-...-++.|.+.|+++|..++++||+++++|++|+.+.....-. +. -...+|++..+..|.+||..| |+...
T Consensus 197 v~TDg~FSMDGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~G-Gyttg 275 (417)
T KOG1359|consen 197 VVTDGVFSMDGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASG-GYTTG 275 (417)
T ss_pred EEecceeccCCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCC-CCccC
Confidence 9999999999999999999999999999999999998654332111 10 124689999999999998876 99999
Q ss_pred echhhcc-C-CCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 038499 312 TKALYQL-G-SFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIE 389 (609)
Q Consensus 312 ~~~~~~l-~-~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (609)
++.+..+ + +.+|+.+. ..-.|.+++....++++++. ...+.++.+...+
T Consensus 276 p~~li~llrqr~RpylFS-------------------------nslppavV~~a~ka~dllm~----s~~~i~~~~a~~q 326 (417)
T KOG1359|consen 276 PKPLISLLRQRSRPYLFS-------------------------NSLPPAVVGMAAKAYDLLMV----SSKEIQSRQANTQ 326 (417)
T ss_pred ChhHHHHHHhcCCceeec-------------------------CCCChhhhhhhHHHHHHHHh----hHHHHHHHHHHHH
Confidence 9888331 1 11222110 12246777777777776643 3455667778888
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
++++..... |+.|.+. ..||....+.+ .. ....+++.|++. ||.|-+-.....|.+
T Consensus 327 rfr~~me~a-GftIsg~----~hPI~pv~lGd-a~----------------lA~~~ad~lLk~-Gi~Vigfs~PvVP~g- 382 (417)
T KOG1359|consen 327 RFREFMEAA-GFTISGA----SHPICPVMLGD-AR----------------LASKMADELLKR-GIYVIGFSYPVVPKG- 382 (417)
T ss_pred HHHHHHHhc-CceecCC----CCCccceeccc-HH----------------HHHHHHHHHHhc-CceEEeecCCcCCCC-
Confidence 888877654 9999876 34777666655 21 345677777764 999884433222211
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
...||+.++..+|+||||++++++.++.+.
T Consensus 383 -------------------------kariRVqiSAaHt~edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 383 -------------------------KARIRVQISAAHTEEDIDRLIEAFSEVGRF 412 (417)
T ss_pred -------------------------ceEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence 356899998899999999999999988764
|
|
| >PRK09257 aromatic amino acid aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.4e-17 Score=176.09 Aligned_cols=170 Identities=18% Similarity=0.115 Sum_probs=124.1
Q ss_pred HHHHHHHHHHHhC------CCCCCcE--EEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 123 VHEASNYIKKCLG------GGQEDAM--IFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 123 ~~e~r~~ia~~~g------~~~~~~v--ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
..++|+.+++++. .+++ +| ++| +|+++++..+++.+. .+++|| .|+++.+.|+.+
T Consensus 71 ~~~lR~aia~~~~~~~~~~~~~~-~i~v~iT-~Ga~~al~~~~~~l~-------------~~~pGd--~Vlv~~P~y~~~ 133 (396)
T PRK09257 71 LAAYRQAVQELLFGADSPALAAG-RVATVQT-PGGTGALRVGADFLK-------------RAFPDA--KVWVSDPTWPNH 133 (396)
T ss_pred CHHHHHHHHHHhcCCCCcccccC-eEEEEec-CCccHHHHHHHHHHH-------------HhCCCC--eEEECCCCcccH
Confidence 4556666666642 1344 65 777 899999998877653 136899 799999999999
Q ss_pred HHHHHHcCceEEEEec-C-CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEe
Q 038499 195 LLSWRQSLAEVVEIGL-D-DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFD 269 (609)
Q Consensus 195 ~~~~~~~G~~vv~v~~-~-~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD 269 (609)
...++..|++++.++. + +++.+|+++|++++++. .++++++++++++||||.+.+. ++|+++|++||+++|+|
T Consensus 134 ~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~~~~~--~~~~~~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~D 211 (396)
T PRK09257 134 RAIFEAAGLEVKTYPYYDAATKGLDFDAMLADLSQA--PAGDVVLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLD 211 (396)
T ss_pred HHHHHHcCCcEEEEeccccccCccCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 9999999999999997 3 34679999999988742 1345788889999999999884 56888999999999999
Q ss_pred ccccCCccc-----ccCCCCC-CCCccEEEEcCCCCCCCC-CCcEEEEE
Q 038499 270 FAASGPYVE-----IDVRSGQ-TDGYDAIFLSTHKFLGGP-GSPGILLM 311 (609)
Q Consensus 270 ~A~~~~~~~-----id~~~~~-~~~~D~v~~S~hK~lggp-~g~G~L~~ 311 (609)
+++..-... ..+..+. ....-+++.|++|.++.| ..+|++++
T Consensus 212 e~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~GlRiG~~~~ 260 (396)
T PRK09257 212 IAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGERVGALSV 260 (396)
T ss_pred ccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccccceeEEE
Confidence 996532110 1111110 012247788999999843 45999984
|
|
| >KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.2e-16 Score=160.25 Aligned_cols=345 Identities=14% Similarity=0.125 Sum_probs=230.7
Q ss_pred CceEEecCCCCCCC-hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH---
Q 038499 76 RRLTYADHTASGRS-LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA--- 151 (609)
Q Consensus 76 ~~~vyld~~a~g~~-~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta--- 151 (609)
+-.||+.+-..+-+ .+.|.+++.+.+...-+..+..... .+......++++.+|++.+-+. .++|+ |.-.+
T Consensus 172 ~VtVWCSNDYLgms~Hp~V~~A~~~tl~~hG~GAGGTRNI--sG~s~~hv~LE~eLA~LHqK~a--ALlFs-SCfVANDs 246 (570)
T KOG1360|consen 172 KVTVWCSNDYLGMSRHPEVLDAMHDTLDRHGAGAGGTRNI--SGHSKHHVRLEAELADLHQKEA--ALLFS-SCFVANDS 246 (570)
T ss_pred ceEEEecCccccccCChHHHHHHHHHHHHcCCCcCCcccc--CCCCchhhhHHHHHHHHhcCcc--eeeee-eeeeccch
Confidence 34578744433322 3568899988876653222211111 1234556778899999999764 47775 43322
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~ 231 (609)
.+..+.+.+ ||- +|+.....|.|++...|.++++-.....+ |++.|++.|++. ..
T Consensus 247 tLftLak~l-----------------pgc--ei~SD~gNHASMI~GIrns~v~K~IFrHN-----D~~hL~~lL~~~-~~ 301 (570)
T KOG1360|consen 247 TLFTLAKKL-----------------PGC--EIFSDEGNHASMIQGIRNSRVPKHIFRHN-----DLDHLEQLLQSS-PK 301 (570)
T ss_pred HHHHHHHHC-----------------CCc--EEeccccchHHHHHHhhhcCCcceeeccC-----CHHHHHHHHHhC-CC
Confidence 344444433 444 78888999999999999988876666655 899999999753 22
Q ss_pred CCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc-----ccCCCCCCCCccEEEEcCCCCCCCCCCc
Q 038499 232 KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE-----IDVRSGQTDGYDAIFLSTHKFLGGPGSP 306 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~-----id~~~~~~~~~D~v~~S~hK~lggp~g~ 306 (609)
..||+|.|..+++++|.+.|+++|++++|+||++.++|+.|+.|.-. +.-+++....+|+++.+.-|.||..+
T Consensus 302 svPKivAFEtVhSM~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKafGcVG-- 379 (570)
T KOG1360|consen 302 SVPKIVAFETVHSMDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAFGCVG-- 379 (570)
T ss_pred CCCceEEEeeeeccCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhccccc--
Confidence 47899999999999999999999999999999999999998865321 11122223457999999999999665
Q ss_pred EEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCC-ChhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 038499 307 GILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG-TPQVIQMIRAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 307 G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~g-tp~i~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (609)
|++.....++ +-++.+..| . -+... .|.++.-...++.++ +...|. .++...+
T Consensus 380 GYIAat~~Lv--DmiRSyAaG-F---------------------IFTTSLPP~vl~GAleaVr~l-k~~eg~-~lR~~hq 433 (570)
T KOG1360|consen 380 GYIAATRKLV--DMIRSYAAG-F---------------------IFTTSLPPMVLAGALEAVRIL-KSEEGR-VLRRQHQ 433 (570)
T ss_pred ceehhhhhHH--HHHHHhcCc-e---------------------EEecCCChHHHHhHHHHHHHH-hhhhhH-HHHHHHH
Confidence 7888888883 333222111 0 01111 234444334444443 333343 3445566
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
+...++++.|.++ |+.|+..+ .-|+-..+.+ . ....++++.|..++||.+..--....
T Consensus 434 rnv~~~kq~l~~~-GiPVi~~p----SHIiPv~vgd-a----------------~l~~~~sd~Li~~h~iYvQaINyPTV 491 (570)
T KOG1360|consen 434 RNVKYVKQLLMEL-GIPVIPNP----SHIIPVRVGD-A----------------ALAKQASDILISKHNIYVQAINYPTV 491 (570)
T ss_pred HHHHHHHHHHHHc-CCcccCCC----cceeeeeccC-H----------------HHHHHHHHHHHHhcCeEEEeccCCcc
Confidence 7788999999887 88777652 2444445544 2 24568888888899999874322221
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
+. ....+||...+..|++-++.+++++..+-....
T Consensus 492 ~r--------------------------G~E~LRiaPTP~HT~~mm~~lv~~l~~vw~~v~ 526 (570)
T KOG1360|consen 492 AR--------------------------GTERLRIAPTPHHTPQMMNILVNALLDVWNEVG 526 (570)
T ss_pred cc--------------------------cceeeecCCCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 11 236799999999999999999999999887755
|
|
| >TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.1e-17 Score=172.01 Aligned_cols=242 Identities=16% Similarity=0.101 Sum_probs=161.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhc-CCCceEEEECCCCccchHHH
Q 038499 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLR-DEERWVVFVGPHEHHSNLLS 197 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~-~gd~~~Vlv~~~~h~s~~~~ 197 (609)
...+..++.+.+++++|.+.....+++++||..++.+++.+++. .+ +|+ .|+++...|.+...+
T Consensus 103 ~~~l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~-------------~~~~gd--~VI~p~~th~S~~kA 167 (444)
T TIGR03531 103 LYKLTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRH-------------KRPKAK--YVIWPRIDQKSCIKA 167 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCC-------------cCCCCC--EEEEECcChHHHHHH
Confidence 46778889999999999974334677744443466666555431 01 466 799999999999999
Q ss_pred HHHcCceEEEEec--C-CCCCCCHHHHHHHHhhhccCCCceEEEEeccc-CccccccCHHHHHHHHHHhCCeEEEecccc
Q 038499 198 WRQSLAEVVEIGL--D-DDGLLDIEALRSKLELYKDAKRPILGSFSACS-NVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 198 ~~~~G~~vv~v~~--~-~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~s-n~TG~~~dl~~I~~la~~~g~~vivD~A~~ 273 (609)
+...|++++.|+. + +++.+|+++|+++|+.. .++..++++..++ +.+|...|+++|+++|++||+++|+|+|++
T Consensus 168 i~~~G~~pv~Vd~~~d~~~~~iD~e~Le~aIt~~--~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg 245 (444)
T TIGR03531 168 ISTAGFEPRVIETVLDGDELTTDVEDIERAIEEI--GPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYG 245 (444)
T ss_pred HHHcCCeEEEeeeeecCcCCCcCHHHHHHHHHhc--cCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCc
Confidence 9999999999995 3 46789999999999831 0145555555443 455688999999999999999999999998
Q ss_pred CCcccc-cC--CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccc
Q 038499 274 GPYVEI-DV--RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE 350 (609)
Q Consensus 274 ~~~~~i-d~--~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (609)
.+.... .+ .......+|++++|+||++..|.+.|+++++++-. ++.+...+.+
T Consensus 246 ~~~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el-~~~i~~~y~g----------------------- 301 (444)
T TIGR03531 246 LQSNKYMELINKAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENF-IQEISKSYPG----------------------- 301 (444)
T ss_pred CcChhhhhhhhccccccCCCeEEEeCccCCCCCCCEEEEEECCHHH-HHHHHHhccC-----------------------
Confidence 754321 11 11111246999999999999888767777754431 2232211111
Q ss_pred cccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeCC
Q 038499 351 RESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ---NIKILGN 406 (609)
Q Consensus 351 r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~~ 406 (609)
+. .+++ .. .+.+.+......|++.+.++..++++++.+.|.++. |-+++..
T Consensus 302 ~~-~~s~--~~--~~~~~ll~~G~~g~~~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~ 355 (444)
T TIGR03531 302 RA-SASP--SL--DVLITLLSLGSKGYLELLKERKEMYKYLKELLQKLAERHGERLLDT 355 (444)
T ss_pred CC-CChH--HH--HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcEeecC
Confidence 00 1112 11 122222222345677888888889999998887652 4566644
|
In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein. |
| >COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-16 Score=152.79 Aligned_cols=170 Identities=18% Similarity=0.224 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
.++...+.+++++|.+ .+=+| +|+-.+=..++.+++ ++|| .|++....|++...++...
T Consensus 62 pI~~F~~dlaeFlg~D---~~R~t-~GARe~KfavMhal~---------------~~gd--~vV~D~~aHYttyvAAEra 120 (382)
T COG1103 62 PIKDFLEDLAEFLGMD---EVRVT-AGAREAKFAVMHALC---------------KEGD--WVVVDSLAHYTTYVAAERA 120 (382)
T ss_pred cHHHHHHHHHHHhCCc---eeeec-ccchhhHHHHHHHhc---------------cCCC--EEEEcCcchHHHHHHHHhc
Confidence 4566677799999995 56787 899998888888886 7888 7999999999999999999
Q ss_pred CceEEEEecCC--CCCCCHHHHHHHHhhhccC--CCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc
Q 038499 202 LAEVVEIGLDD--DGLLDIEALRSKLELYKDA--KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277 (609)
Q Consensus 202 G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~--~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~ 277 (609)
|.+|..||... +..++++...+.|.+.... ..+.+.+++|+....|.+.|.+.++++|+++|+++++.+|++.|-.
T Consensus 121 gl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grm 200 (382)
T COG1103 121 GLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRM 200 (382)
T ss_pred CCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccc
Confidence 99999999653 6789999998888754322 3478999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 278 EIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
+++.++. ++||++.|+||.+..-+.+|+|-++.+.
T Consensus 201 pvs~ke~---g~DFiVgSGHKsmAAs~PiGvl~~~eE~ 235 (382)
T COG1103 201 PVSGKEI---GADFIVGSGHKSMAASAPIGVLAMSEEW 235 (382)
T ss_pred ccccccc---CCCEEEecCccchhccCCeeEEeehhHH
Confidence 9999887 9999999999999877779999999887
|
|
| >PRK02627 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.7e-16 Score=166.04 Aligned_cols=335 Identities=17% Similarity=0.156 Sum_probs=193.2
Q ss_pred CCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCC
Q 038499 65 KNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQ 138 (609)
Q Consensus 65 ~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~ 138 (609)
++.++.+..|+ .|+|..++ |+..+.+.+++.+.+.... +.. . ........++.++++++.|.
T Consensus 29 ~G~~~~d~dg~---~~iD~~~g~~~~~lG~~~p~v~~a~~~~~~~~~---~~~-~---~~~~~~~~~la~~l~~~~~~-- 96 (396)
T PRK02627 29 EGARLWDDDGK---EYLDFLAGIAVNNLGHCHPKLVEAIQEQAAKLI---HTS-N---LYYIEPQEELAEKLVELSGM-- 96 (396)
T ss_pred eeCEEEeCCCC---EEEECCccHHhccCCCCCHHHHHHHHHHHhhcc---ccc-c---ccCCHHHHHHHHHHHhhcCC--
Confidence 34445555554 37887653 4556789999988775431 111 0 01245677788888888765
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCC-----ceEEEECCCCccchHHH-HHHcCceEEE---Ee
Q 038499 139 EDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE-----RWVVFVGPHEHHSNLLS-WRQSLAEVVE---IG 209 (609)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd-----~~~Vlv~~~~h~s~~~~-~~~~G~~vv~---v~ 209 (609)
++++|+. |.++++..+++++. ..++ ++.|++....||..... ....+..... .+
T Consensus 97 -~~v~~~~-gg~eA~~~al~~a~---------------~~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 159 (396)
T PRK02627 97 -DKVFFCN-SGAEANEAAIKLAR---------------KYGHKKGIEKPEIITAENSFHGRTLATLSATGQPKYQEGFEP 159 (396)
T ss_pred -CEEEECC-CcHHHHHHHHHHHH---------------HHhcccCCCCCeEEEECCCcCcccHHHHHhcCCccccccCCC
Confidence 3899985 44556766666431 1111 12466666555554333 3222222111 11
Q ss_pred cCCCC----CCCHHHHHHHHhhhccCCCceEEEEecccCcccc-ccC---HHHHHHHHHHhCCeEEEeccccC-Cccc--
Q 038499 210 LDDDG----LLDIEALRSKLELYKDAKRPILGSFSACSNVTGI-YSD---TRSIARLLHQYGGFACFDFAASG-PYVE-- 278 (609)
Q Consensus 210 ~~~~g----~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~-~~d---l~~I~~la~~~g~~vivD~A~~~-~~~~-- 278 (609)
...+. ..|+++|++++. +++++++++.++|++|. ..| +++|.++|++||+++|+|++++. +...
T Consensus 160 ~~~~~~~~~~~d~~~l~~~i~-----~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DE~~~g~g~~g~~ 234 (396)
T PRK02627 160 LVEGFIYVPFNDIEALKAAIT-----DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL 234 (396)
T ss_pred CCCCceEeCCCCHHHHHHhcC-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhcCCCccCce
Confidence 11110 128999999996 68999999999999995 433 78999999999999999999773 2211
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
....... ...|+++ ++|.+++...+|++++++++ ++.+.+.... ...+.+.
T Consensus 235 ~~~~~~~-~~pdi~t--~sK~~~~G~rig~~~~~~~~--~~~~~~~~~~------------------------~t~~~~~ 285 (396)
T PRK02627 235 FAYQHYG-IEPDIMT--LAKGLGGGVPIGAVLAKEKV--ADVFTPGDHG------------------------STFGGNP 285 (396)
T ss_pred eeehhcC-CCCCEEE--EcchhhCCcccEEEEEcHHH--HhccCCCCCC------------------------CCCCCCH
Confidence 1111110 1346654 56999855568999999887 3443221000 0112222
Q ss_pred HHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC----CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCC
Q 038499 359 VIQ-MIRAALAFWVKEYIGHEVIKKQEETYIERALERLL----PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTK 433 (609)
Q Consensus 359 i~~-~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~----~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~ 433 (609)
+.+ .+.+++... +. +.+.++.+++.+++.+.|. ..+.+.... ....++++.+ +
T Consensus 286 ~~~~aa~~~l~~~--~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~g~~~~i~~-~------------ 343 (396)
T PRK02627 286 LACAAALAVIEII--EE---EGLLENAAEVGEYLRAKLRELLEKYPGIKEVR----GLGLMIGIEL-D------------ 343 (396)
T ss_pred HHHHHHHHHHHHH--hh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeec----cCcEEEEEEe-c------------
Confidence 222 223333322 11 2233444444444444443 333222111 1223344433 3
Q ss_pred CCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHH
Q 038499 434 TETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513 (609)
Q Consensus 434 ~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ 513 (609)
.+...+++.|.++ ||.++++. ++++|+++++..+++++++
T Consensus 344 ------~~~~~~~~~l~~~-Gv~v~~~~---------------------------------~~~lRi~~~~~~~~~~i~~ 383 (396)
T PRK02627 344 ------RPAAEIVKKALEK-GLLINVTG---------------------------------DNVLRLLPPLIISKEEIDE 383 (396)
T ss_pred ------CcHHHHHHHHHHC-CeEEeecC---------------------------------CCEEEEECCcccCHHHHHH
Confidence 1456788888775 99988431 3679999988899999999
Q ss_pred HHHHHHHHHHh
Q 038499 514 TLEALEFIAIY 524 (609)
Q Consensus 514 ll~al~~v~~~ 524 (609)
++++|+++++.
T Consensus 384 ~~~~l~~~l~~ 394 (396)
T PRK02627 384 AVDRLEEVLKE 394 (396)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
|
|
| >PRK02936 argD acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-15 Score=161.56 Aligned_cols=329 Identities=16% Similarity=0.219 Sum_probs=189.5
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+++.++.+..|+ .|+|..++ |-.++.|.+++.+.+..... ... . ...+...++.+.+.+..+.
T Consensus 18 ~~G~~~~d~~G~---~~lD~~s~~~~~~lG~~~p~v~~a~~~~~~~~~~-~~~----~--~~~~~~~~la~~l~~~~~~- 86 (377)
T PRK02936 18 GKGTKVTDNNGK---TYLDFTSGIAVCNLGHCHPTVTKAVQEQLDDIWH-VSN----L--FTNSLQEEVASLLAENSAG- 86 (377)
T ss_pred eecCEEEeCCCC---EEEECCcchhhccCCCCCHHHHHHHHHHHHhccc-ccc----c--cCCHHHHHHHHHHHhcCCC-
Confidence 445556556664 37886544 56778899999998865321 111 0 1134455555666555443
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc------------eE
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA------------EV 205 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~v 205 (609)
+.++|+++|+.+....+..+.. -+|++.+|......|.+....+...+. .+
T Consensus 87 --~~~~~~~sG~~a~~~A~~~a~~---------------~~g~~~vi~~~~~~Hg~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (377)
T PRK02936 87 --DLVFFCNSGAEANEAALKLARK---------------HTGKSKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGF 149 (377)
T ss_pred --CEEEEeCCcHHHHHHHHHHHHH---------------hcCCCeEEEECCCcCCCcHHhhhccCCccccccCCCCCCCc
Confidence 3688887888864443322221 134332455555555555544443332 12
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Ccc--c
Q 038499 206 VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYV--E 278 (609)
Q Consensus 206 v~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~--~ 278 (609)
..++.+ |+++|++.+. +++++++++.+++++|...+ +++|.++|++||+++|+|+++.. +.. .
T Consensus 150 ~~~~~~-----d~~~l~~~~~-----~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~ 219 (377)
T PRK02936 150 THVPFN-----DIKALKEVMN-----EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTL 219 (377)
T ss_pred eEeCCC-----CHHHHHHhcc-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchh
Confidence 222222 7899999887 57899999999999888743 88999999999999999999753 221 1
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
+.+.... -..|++ +++|.+++...+|+++.++++ .+.+.+... ....+.+.
T Consensus 220 ~~~~~~~-~~~di~--t~sK~l~~G~~ig~v~~~~~~--~~~~~~~~~------------------------~~t~~~~~ 270 (377)
T PRK02936 220 FAYEQFG-LDPDIV--TVAKGLGNGIPVGAMIGKKEL--GTAFGPGSH------------------------GSTFGGNP 270 (377)
T ss_pred hHHHhhC-CCCcEE--EEcccccCCCccEEEEEcHHH--HhhccCCCC------------------------CCCCCCCH
Confidence 1111110 134655 467999843347999998887 333321100 00112222
Q ss_pred HH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCC
Q 038499 359 VI-QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTK 433 (609)
Q Consensus 359 i~-~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~ 433 (609)
+. ..+.+++.... . +...++.++..+++.+.|.+ ++.+..+.+ ...++++.+..
T Consensus 271 ~~~aaa~a~l~~~~-~----~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~----~g~~~~i~~~~------------ 329 (377)
T PRK02936 271 LAMAAAKEVLQVIK-Q----PSFLEEVQEKGEYFLQKLQEELEHLECVKNIRG----KGLMIGIECTE------------ 329 (377)
T ss_pred HHHHHHHHHHHHHH-h----ccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEee----cceEEEEEecc------------
Confidence 22 22334443321 1 22334444445555554443 443322211 22344444332
Q ss_pred CCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHH
Q 038499 434 TETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513 (609)
Q Consensus 434 ~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ 513 (609)
....+.+.|.+ .||.+.++ ..+++|++++...+++++++
T Consensus 330 -------~~~~~~~~l~~-~gv~v~~~---------------------------------g~~~lRi~p~~~~~~~~i~~ 368 (377)
T PRK02936 330 -------EVAPVIEQLRE-EGLLVLSA---------------------------------GPNVIRLLPPLVVTKEELDQ 368 (377)
T ss_pred -------hHHHHHHHHHH-CCeEEecC---------------------------------CCCEEEEECCcccCHHHHHH
Confidence 25677777755 69988632 13789999998999999999
Q ss_pred HHHHHHHH
Q 038499 514 TLEALEFI 521 (609)
Q Consensus 514 ll~al~~v 521 (609)
++++|+++
T Consensus 369 ~i~~l~~~ 376 (377)
T PRK02936 369 AVYLLKKV 376 (377)
T ss_pred HHHHHHHh
Confidence 99999875
|
|
| >PRK08637 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-16 Score=168.38 Aligned_cols=303 Identities=14% Similarity=0.088 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhC-----CCCC--CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 123 VHEASNYIKKCLG-----GGQE--DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 123 ~~e~r~~ia~~~g-----~~~~--~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
..++|+.+++++. ..++ ++|++| +|+++++..++.++ .++|| .|++..+.|+.+.
T Consensus 46 ~~~lr~~ia~~~~~~~~~~~~~~~~~I~it-~G~~~al~~~~~~l---------------~~~gd--~Vlv~~P~y~~~~ 107 (388)
T PRK08637 46 IPELRDLWQEKMLRENPSLSGKKMSLPIVT-NALTHGLSLVADLF---------------VDQGD--TVLLPDHNWGNYK 107 (388)
T ss_pred CHHHHHHHHHHHhccCccccccccceeeEc-cchHHHHHHHHHHh---------------cCCCC--EEEEcCCCCccHH
Confidence 4455666665542 2222 367887 89999999988877 37888 6999999998887
Q ss_pred HHHH-HcCceEEEEecC-CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCH---HHHHHHHHH-----hCCe
Q 038499 196 LSWR-QSLAEVVEIGLD-DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT---RSIARLLHQ-----YGGF 265 (609)
Q Consensus 196 ~~~~-~~G~~vv~v~~~-~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~-----~g~~ 265 (609)
..+. ..|++++.+++. +++.+|+++|+++++.. ..+..+++++++|+||||.+.+. ++|+++|++ |+++
T Consensus 108 ~~~~~~~g~~vv~v~~~~~~~~~d~~~l~~~~~~~-~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~ 186 (388)
T PRK08637 108 LTFNTRRGAEIVTYPIFDEDGGFDTDALKEALQAA-YNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVV 186 (388)
T ss_pred HHHHHhcCCEEEEecccCCCCcCCHHHHHHHHHhh-ccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEE
Confidence 7654 579999999984 45568999999988621 01345678899999999999885 456676664 8999
Q ss_pred EEEeccccCCc----ccccC-CCC-CC-CCccE-EEEcCCCCCCCCC-CcEEEEEec------hhhccCCCCCCccCCCc
Q 038499 266 ACFDFAASGPY----VEIDV-RSG-QT-DGYDA-IFLSTHKFLGGPG-SPGILLMTK------ALYQLGSFPPSTCGGGT 330 (609)
Q Consensus 266 vivD~A~~~~~----~~id~-~~~-~~-~~~D~-v~~S~hK~lggp~-g~G~L~~~~------~~~~l~~~~p~~~ggg~ 330 (609)
+|+|+++..-. ...++ ... .. +.+.+ .+.|++|.++.|+ .+|++++.. ++ ++.+......
T Consensus 187 iI~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGlRlG~~~~~~~~~~~~~l--~~~~~~~~~~--- 261 (388)
T PRK08637 187 AVVDDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGFRVGFITFGTKAGSSQTV--KEALEKKVKG--- 261 (388)
T ss_pred EEecccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCcccceEEEEEccccCCcHHH--HHHHHHHHHH---
Confidence 99999965211 11111 111 00 12212 2348999877664 499999753 33 1111000000
Q ss_pred eEeeccccccccccccccccccc-CCChhHHHHHHHHHHHHHHHhcCH---HHHHHHHHHHHHHHHHHhCCC---CceEE
Q 038499 331 VNYVNGFNEKDTLYLEDIEERES-GGTPQVIQMIRAALAFWVKEYIGH---EVIKKQEETYIERALERLLPN---QNIKI 403 (609)
Q Consensus 331 v~~~~~~~~~~~~~~~~~~~r~~-~gtp~i~~~~~aal~~~~~~~~g~---~~i~~~~~~l~~~~~~~L~~~---p~i~v 403 (609)
..+.. .+.+.+.+.+ +..+ +.+.... .......++..+.+.+.|... +++.+
T Consensus 262 ------------------~~~~~~~~~s~~~q~a--~~~~-l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~ 320 (388)
T PRK08637 262 ------------------LIRSNISNGPHPSQSA--VLRA-LNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQA 320 (388)
T ss_pred ------------------HhhcccCCCCcHHHHH--HHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCccc
Confidence 00000 1223333322 1122 2111111 122223334444455556443 24555
Q ss_pred eCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHH
Q 038499 404 LGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIR 483 (609)
Q Consensus 404 ~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~ 483 (609)
..+ ..+++.|...+ + .+..++++.|.++.||.+...
T Consensus 321 ~~~----~~g~~~~~~l~-~----------------~~~~~l~~~l~~~~gv~~~~~----------------------- 356 (388)
T PRK08637 321 YPF----NSGYFMCLKLK-G----------------VDAEELRVHLLEKYGIGTIAL----------------------- 356 (388)
T ss_pred ccc----cceEEEEecCC-h----------------HHHHHHHHHHhhhcceEEEec-----------------------
Confidence 443 34555554433 1 245678888866679977621
Q ss_pred HHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 484 SAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 484 ~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++||+++. .++++++..++.|.+++...
T Consensus 357 ----------~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~~~ 387 (388)
T PRK08637 357 ----------NETDLRIAFSC-VEEEDIPELFDSIYKAIKDL 387 (388)
T ss_pred ----------cCCceEEEeec-CCHHHHHHHHHHHHHHHHhc
Confidence 14789999975 67899999999998887643
|
|
| >PLN02397 aspartate transaminase | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-16 Score=170.84 Aligned_cols=252 Identities=15% Similarity=0.117 Sum_probs=164.0
Q ss_pred cCCCceEEEECCCCccchHHHHHHcCceEEEEec-CC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCH--
Q 038499 177 RDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL-DD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT-- 252 (609)
Q Consensus 177 ~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl-- 252 (609)
.||| .|+++.+.|+.+...++..|++++.+++ +. +..+|++.+++.+.+. .++++++++++++||||.+.+.
T Consensus 140 ~pGd--~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~~~~~~d~~~l~~~l~~~--~~~~~~i~~~~P~NPTG~v~s~e~ 215 (423)
T PLN02397 140 YPGS--TIYIPNPTWGNHHNIFRDAGVPVRTYRYYDPKTRGLDFDGLLEDLKAA--PDGSFVLLHACAHNPTGVDPTPEQ 215 (423)
T ss_pred CCCC--EEEEeCCCchhHHHHHHHcCCeEEEeecccCcCCccCHHHHHHHHHhC--CCCCEEEEeCCCCCCCCCCCCHHH
Confidence 5888 7999999999999999999999999997 32 4679999999888632 1467899999999999999874
Q ss_pred -HHHHHHHHHhCCeEEEeccccCCcc-c-----ccCCCCCCCC-ccEEEEcCCCCCCCC-CCcEEEE--E-echhhc--c
Q 038499 253 -RSIARLLHQYGGFACFDFAASGPYV-E-----IDVRSGQTDG-YDAIFLSTHKFLGGP-GSPGILL--M-TKALYQ--L 318 (609)
Q Consensus 253 -~~I~~la~~~g~~vivD~A~~~~~~-~-----id~~~~~~~~-~D~v~~S~hK~lggp-~g~G~L~--~-~~~~~~--l 318 (609)
++|+++|++||+++|+|+++..-.- . ..+......+ .-+++.|++|.++-| ..+|+++ + ++++.. .
T Consensus 216 l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~RvG~~v~~~~~~~~~~~~~ 295 (423)
T PLN02397 216 WEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGERVGALSVVCKSADVAVRVK 295 (423)
T ss_pred HHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccccceEEEEEeCCHHHHHHHH
Confidence 5678889999999999999653211 0 0111110011 236677999999833 3599986 3 333210 0
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHHHHH
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY-------IGHEVIKKQEETYIERA 391 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~-------~g~~~i~~~~~~l~~~~ 391 (609)
..+... ......+++...+.+. ..+ +.+. ...+.++++.++.++.+
T Consensus 296 ~~~~~~------------------------~~~~~~~~~~~~q~~~--~~~-L~~~~~~~~~~~~~~~~~~~~~~rr~~l 348 (423)
T PLN02397 296 SQLKLI------------------------ARPMYSNPPIHGASIV--ATI-LGDPELFSEWTKELKGMADRIISMRQKL 348 (423)
T ss_pred HHHHHH------------------------HhcccCCCcHHHHHHH--HHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011000 0001122333333221 111 1110 11456677888888999
Q ss_pred HHHhCCCCc----eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh
Q 038499 392 LERLLPNQN----IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY 467 (609)
Q Consensus 392 ~~~L~~~p~----i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~ 467 (609)
.+.|+++ + +.+..+ ..+++.|.-. + .++++.|.+++||.+.+
T Consensus 349 ~~~L~~~-~~~~~~~~~~p----~gg~fl~~~l--------------------~-~~~~~~Ll~~~~V~v~~-------- 394 (423)
T PLN02397 349 YDALEAR-GSPGDWSHITK----QIGMFSFTGL--------------------N-KEQVDRMTKEYHIYMTR-------- 394 (423)
T ss_pred HHHHHhc-CCCCCCCcccC----CceEEEecCC--------------------C-HHHHHHHHHhCCEEECC--------
Confidence 9999876 4 444333 3455555432 2 34777787888998851
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.+ |+++.. .+.+.+++++++|+.+++
T Consensus 395 ---------------------------~~--Ri~~~~-~~~~~i~~~~~~i~~~~~ 420 (423)
T PLN02397 395 ---------------------------DG--RISMAG-LSSKNVPYLADAIHAVVT 420 (423)
T ss_pred ---------------------------CC--eEEEee-CCHHHHHHHHHHHHHHHh
Confidence 24 999842 688999999999999975
|
|
| >PRK04260 acetylornithine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.4e-15 Score=160.53 Aligned_cols=334 Identities=13% Similarity=0.141 Sum_probs=192.8
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+++.++....|++ |+|..+. |. .+.|.+++.+.+.....++.. ...++++.+++.+...
T Consensus 18 ~~G~~l~d~dg~~---~lD~~s~~~~~~lG~-~p~v~~a~~~~~~~~~~~~~~-----------~~~~~~~~la~~l~~~ 82 (375)
T PRK04260 18 AEGNYLIDTDGKK---YLDFSSGIGVTNLGF-HPQVQQALQKQAGLIWHSPNL-----------YLNSLQEEVAQKLIGD 82 (375)
T ss_pred eeeCEEEeCCCCE---EEECCCCcccccCCC-CHHHHHHHHHHHHhcCcccCc-----------cCCHHHHHHHHHHhcC
Confidence 4556666666753 7777543 56 567999998888654322211 1334566677655444
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEE-CCCCccchHHHHHHcCceE---------EE
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFV-GPHEHHSNLLSWRQSLAEV---------VE 207 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G~~v---------v~ 207 (609)
+++.++|++||+.+....+..+.. ...++ .|++ ....|.+....+...+.+. ..
T Consensus 83 ~~~~~~~~~SGseA~~~Al~~ar~--------------~~~~~--~vv~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~ 146 (375)
T PRK04260 83 KDYLAFFCNSGAEANEAAIKIARK--------------ATGKQ--EIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPH 146 (375)
T ss_pred cCCEEEEcCccHHHHHHHHHHHHH--------------hcCCC--eEEEECCCcCcccHHHHhccCCcccCCCCCCCCCC
Confidence 433468887777764433322221 12223 3555 4555555555544333221 11
Q ss_pred EecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCC-ccc--cc
Q 038499 208 IGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP-YVE--ID 280 (609)
Q Consensus 208 v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~-~~~--id 280 (609)
++.. -..|++++++++. +++.+++++.++|++|.+.+ +++|.++|+++|+++++|+++..- ... ..
T Consensus 147 ~~~~--~~~dl~~l~~~l~-----~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~~~~~~i~De~~~g~g~~g~~~~ 219 (375)
T PRK04260 147 FSYA--IFNDLNSVKALVN-----KNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLYA 219 (375)
T ss_pred eEEe--CCCCHHHHHHhcC-----CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhh
Confidence 1110 0238999999886 56889999999999999866 799999999999999999997531 111 11
Q ss_pred CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHH
Q 038499 281 VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI 360 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~ 360 (609)
.... ....|++ +++|.+++...+|++++++++ .+.+...... ....+++...
T Consensus 220 ~~~~-~~~pdi~--t~sK~l~~G~~ig~~~~~~~~--~~~~~~~~~~-----------------------~t~~~~~~~~ 271 (375)
T PRK04260 220 FEHY-GIEPDIF--TLAKGLANGVPVGAMLAKSSL--GGAFGYGSHG-----------------------STFGGNKLSM 271 (375)
T ss_pred hHhh-CCCCCEE--EecccccCCcceEEEEEcHHH--HhhcCCCCCC-----------------------CCCCcCHHHH
Confidence 0011 0135755 677999844458999999887 3333211000 0011223222
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCC
Q 038499 361 QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPL 440 (609)
Q Consensus 361 ~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l 440 (609)
..+.+.+.... ...-.+++++..+.+++.+.+.+...+.+..+.. ...++++.. . .
T Consensus 272 ~aa~a~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~-~------------------~ 327 (375)
T PRK04260 272 AAASATLDIML-TAGFLEQALENGNYLQEQLQKALQDKETVTTVRG----LGYMIGIET-T------------------A 327 (375)
T ss_pred HHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEec----cceEEEEEe-c------------------C
Confidence 22233333321 1112344455555555555555555543322211 223333333 3 1
Q ss_pred ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 441 HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 441 ~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
+...+.+.|.+ .||.+.++ .++.+|++++..++++|+++++++|+.
T Consensus 328 ~~~~~~~~l~~-~Gi~v~~~---------------------------------~~~~lR~~~~~~~t~~~i~~~l~~l~~ 373 (375)
T PRK04260 328 DLSQLVEAARD-KGLIVLTA---------------------------------GTNVIRLLPPLTLTKEEIEQGIAILSE 373 (375)
T ss_pred cHHHHHHHHHh-CCCEEecC---------------------------------CCCEEEEcCCCccCHHHHHHHHHHHHH
Confidence 35678888866 59988632 136799999999999999999999987
Q ss_pred H
Q 038499 521 I 521 (609)
Q Consensus 521 v 521 (609)
+
T Consensus 374 ~ 374 (375)
T PRK04260 374 V 374 (375)
T ss_pred h
Confidence 5
|
|
| >PLN02368 alanine transaminase | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=169.25 Aligned_cols=247 Identities=13% Similarity=0.025 Sum_probs=160.6
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH
Q 038499 120 TNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS 197 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (609)
..+++.+.+++.+..| .+++ +|++| +|++.++..++.++. .++|| .|+++.+.|+.+...
T Consensus 110 ~~LR~aia~~~~~~~g~~~~~~-~I~it-~Ga~~al~~~~~~l~--------------~~pGd--~Vli~~P~Y~~y~~~ 171 (407)
T PLN02368 110 PGVRKEVAEFIERRDGYPSDPE-LIFLT-DGASKGVMQILNAVI--------------RGEKD--GVLVPVPQYPLYSAT 171 (407)
T ss_pred HHHHHHHHHHHHHhcCCCCChh-hEEEc-ccHHHHHHHHHHHHc--------------CCCCC--EEEEeCCCCccHHHH
Confidence 3444444444444446 3454 89998 899989988877662 15888 699999999999999
Q ss_pred HHHcCceEEEEecCC--CCCCCHHHHHHHHhhhcc-CCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEecc
Q 038499 198 WRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKD-AKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 198 ~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~-~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A 271 (609)
++..|++++.++++. ++.+|+++|+++++.... ..+++++++++|+||||.+.+. ++|+++|++||+++|+|++
T Consensus 172 ~~~~g~~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~ 251 (407)
T PLN02368 172 ISLLGGTLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEV 251 (407)
T ss_pred HHHcCCEEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcc
Confidence 999999999999875 367999999999973211 1268999999999999999885 5678889999999999999
Q ss_pred ccCCc-----ccccCC----CCC----CCCccEEEEcCCCCC-CCC-CCcEEEEE---echhhccCCCCCCccCCCceEe
Q 038499 272 ASGPY-----VEIDVR----SGQ----TDGYDAIFLSTHKFL-GGP-GSPGILLM---TKALYQLGSFPPSTCGGGTVNY 333 (609)
Q Consensus 272 ~~~~~-----~~id~~----~~~----~~~~D~v~~S~hK~l-ggp-~g~G~L~~---~~~~~~l~~~~p~~~ggg~v~~ 333 (609)
+..-. ....+. .+. ....-+++.|++|.+ |-| ..+|++++ ++++ ++.+...
T Consensus 252 Y~~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~l--i~~~~~~--------- 320 (407)
T PLN02368 252 YQQNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKT--VEEIYKV--------- 320 (407)
T ss_pred ccccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHH--HHHHHHH---------
Confidence 65311 111110 010 011346677999998 433 34899995 6666 2222111
Q ss_pred ecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh-----------cCHHHHHHHHHHHHHHHHHHhCCCCceE
Q 038499 334 VNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY-----------IGHEVIKKQEETYIERALERLLPNQNIK 402 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~-----------~g~~~i~~~~~~l~~~~~~~L~~~p~i~ 402 (609)
. ....+.+.+.+.+ +.+++ ... ...+.+.+..++.++.+.+.|+++||+.
T Consensus 321 ---------------~-~~~~~~~~~~Q~a--a~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~ 381 (407)
T PLN02368 321 ---------------A-SIALSPNVSGQIF--MGLMV-NPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVV 381 (407)
T ss_pred ---------------h-cccCCCCcHHHHH--HHHHh-CCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeE
Confidence 0 0011222233322 22222 110 0113456677888899999999999988
Q ss_pred EeCCCCCCCcceEEEE
Q 038499 403 ILGNTSTKRQAILSFN 418 (609)
Q Consensus 403 v~~~~~~~r~~~~~f~ 418 (609)
+..+ ..+++.|.
T Consensus 382 ~~~P----~Gafy~~~ 393 (407)
T PLN02368 382 CNFT----EGAMYSFP 393 (407)
T ss_pred eCCC----CeeeEecc
Confidence 7654 34555554
|
|
| >COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-15 Score=152.77 Aligned_cols=342 Identities=18% Similarity=0.224 Sum_probs=219.7
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+.-|++ |+|..+. |-+.+.+.+++.++....+.-.+. + .++...++.+.+.+..+ .
T Consensus 31 G~G~~v~D~~G~~---YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h~sn~---~----~~~~~~~la~~L~~~s~-~ 99 (404)
T COG4992 31 GEGAYVWDQQGRE---YLDFAAGIAVNNLGHCHPALVEALKEQAEKLWHVSNL---F----YNEPQAELAEKLVELSP-F 99 (404)
T ss_pred ccccEEECCCCCE---eeeeccceeeeccCCCCHHHHHHHHHHHHHhhhcccc---c----CChHHHHHHHHHHhhCc-c
Confidence 6677777777764 9997654 556889999999988766432222 1 23456677778888887 3
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhc-CCCceEEEECCCCccchHHH-----HHH---cC-----c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLR-DEERWVVFVGPHEHHSNLLS-----WRQ---SL-----A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~-~gd~~~Vlv~~~~h~s~~~~-----~~~---~G-----~ 203 (609)
. +.|+||+||+.+ +...+..-- .+. ..++..|+.-...+|.-... ++. .+ -
T Consensus 100 ~-d~vff~NSGaEA-~EaAiKlAR-------------k~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~ 164 (404)
T COG4992 100 A-DRVFFCNSGAEA-NEAALKLAR-------------KYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLP 164 (404)
T ss_pred c-cEEEEcCCcHHH-HHHHHHHHH-------------HHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCC
Confidence 3 489999888875 444333211 011 12233677766666653211 111 11 1
Q ss_pred eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccc
Q 038499 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 204 ~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~i 279 (609)
.++.+|.+ |+++++++|+ ++|..|++..++-..|++.+ ++++-++|++||+++|+|+.|.+-...-
T Consensus 165 g~~~vpfn-----Di~al~~ai~-----~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTG 234 (404)
T COG4992 165 GFRHVPFN-----DIEALEAAID-----EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTG 234 (404)
T ss_pred CceecCCC-----CHHHHHHHhc-----cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccc
Confidence 35566665 8999999999 68999999999999999977 6779999999999999999987532211
Q ss_pred cCCCCC--CCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCCh
Q 038499 280 DVRSGQ--TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP 357 (609)
Q Consensus 280 d~~~~~--~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp 357 (609)
.+-... .-..|+++.. |.+||...+|.+++++.. ...+.|-..|... .|.|
T Consensus 235 k~fA~e~~gV~PDI~tla--K~LgGG~PigA~la~~~~--~~~~~~G~HgSTf-----------------------GGNp 287 (404)
T COG4992 235 KLFAYEHYGVEPDILTLA--KALGGGFPIGAMLATEEI--ASAFTPGDHGSTF-----------------------GGNP 287 (404)
T ss_pred hHHHHHHhCCCCCEEEee--ccccCCccceeeEEchhh--hhcCCCCcccCCC-----------------------CcCH
Confidence 111000 0134887766 999988779999998654 2344444333211 3444
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc-eEEeCCCCCCCcceEE-EEeccCCCCCcCCCCCCCC
Q 038499 358 QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN-IKILGNTSTKRQAILS-FNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 358 ~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~-i~v~~~~~~~r~~~~~-f~~~~~~~~~~~~~~~~~~ 435 (609)
-..+...++++.. ..+.+.++.++..++++++|.++.. +.++... ...+.+. ..+.. +
T Consensus 288 LacAv~~a~l~~l-----~~e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~v--RG~GLmiGiel~~-~------------ 347 (404)
T COG4992 288 LACAVALAVLEVL-----LEEGLLENVREKGEYLLQRLRELKRRYPLVKEV--RGRGLMIGIELKE-P------------ 347 (404)
T ss_pred HHHHHHHHHHHHH-----cchhHHHHHHHHHHHHHHHHHHHhhcCCceeee--ecceeEEEEEecC-c------------
Confidence 4444444455443 3456667777788888888776411 1122211 1123332 33332 1
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTL 515 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll 515 (609)
....++++.|.+ .|+.+.. + .+..+|+..+.-.|++|++.++
T Consensus 348 ----~~a~~~~~~~~~-~gvL~~~----a-----------------------------~~~ViR~~PpL~i~~eei~~~~ 389 (404)
T COG4992 348 ----YRARDIVRALRE-EGVLVLP----A-----------------------------GPNVIRFLPPLVITEEEIDEAL 389 (404)
T ss_pred ----ccHHHHHHHHHH-CCeEEec----C-----------------------------CCCeEEecCCccCCHHHHHHHH
Confidence 136788888877 4988762 2 1478999999999999999999
Q ss_pred HHHHHHHHhcc
Q 038499 516 EALEFIAIYGQ 526 (609)
Q Consensus 516 ~al~~v~~~~~ 526 (609)
++++.+++...
T Consensus 390 ~~l~~~l~~~~ 400 (404)
T COG4992 390 DALERALAAAS 400 (404)
T ss_pred HHHHHHHHHhh
Confidence 99999987643
|
|
| >PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-16 Score=167.09 Aligned_cols=347 Identities=19% Similarity=0.189 Sum_probs=190.0
Q ss_pred CCChHHHHHHHHHhhcCCccC--CCCCCchhhHHH-HHHHHHHHHHHHHHhCCCCCC--cEEEeCChHHHHHHHHHHHhc
Q 038499 87 GRSLRYIENYIINNVLPFYGN--THTCDSYVGQHT-TNMVHEASNYIKKCLGGGQED--AMIFCGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n--~~~~~~~~~~~~-~~~~~e~r~~ia~~~g~~~~~--~vift~sGttaal~~l~~~l~ 161 (609)
....+.|.+++...+...|+. |+.. ++.|... .++..-+++.+++++|++++. .-+=..||+.+++..+ .+|
T Consensus 30 N~~Sp~v~~al~S~l~nkyaeg~pg~r-yy~G~~~id~iE~la~~ra~~lF~~~~~~w~anvqp~SGs~An~av~-~aL- 106 (399)
T PF00464_consen 30 NYMSPAVREALGSDLTNKYAEGYPGKR-YYGGCEYIDEIEELAIERAKELFGAEPKEWYANVQPHSGSQANLAVY-MAL- 106 (399)
T ss_dssp ----HHHHHHHTSGGGGS-TTEETTEE-SSSSTHHHHHHHHHHHHHHHHHHT-STTTEEEE---SSHHHHHHHHH-HHH-
T ss_pred cccCHHHHHHhCCcceeeccccCCCcc-cccCcchhhHHHHHHHHHHHHHhCCCcccceEEeecCCchHHHHHHH-HHH-
Confidence 345567777776666655543 3222 3344443 455666888999999998542 1223347888655444 333
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCCCccchH---HH--H-----HHcCceEEEEecC-CCCCCCHHHHHHHHhhhcc
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL---LS--W-----RQSLAEVVEIGLD-DDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~---~~--~-----~~~G~~vv~v~~~-~~g~ld~e~L~~al~~~~~ 230 (609)
++||| .|+.-+..|.+.. .. . .....+++.++++ +++.+|.+++++.+.+
T Consensus 107 --------------l~pGD--~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l~~~a~~--- 167 (399)
T PF00464_consen 107 --------------LKPGD--TIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDELEKLAKE--- 167 (399)
T ss_dssp --------------T-TT---EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHHHHHHHH---
T ss_pred --------------HhhcC--cEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHHHHHHhh---
Confidence 48999 4776665554332 11 1 2234678888998 4789999999999987
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~ 310 (609)
.+|++|++...+.+ ...|++++.++|++.|+++++|.+|.+|.+.-.+.+-....+|++++|.||.|.||.| |+++
T Consensus 168 -~kPklIi~G~S~y~--~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrg-giI~ 243 (399)
T PF00464_consen 168 -HKPKLIICGASSYP--RPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRG-GIIL 243 (399)
T ss_dssp -H--SEEEEE-SSTS--S---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS--EEEE
T ss_pred -cCCCEEEECchhcc--CccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCc-eEEE
Confidence 58999888765433 6689999999999999999999998765544333332234689999999999999997 9999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccC---CChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG---GTPQVIQMIRAALAFWVKEYIGHEVIKKQEETY 387 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~---gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (609)
.++....++.. + ...+..+.+.+...... |.|....+...++++........+...++..++
T Consensus 244 ~~~~~~~~~~~-----~----------~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~N 308 (399)
T PF00464_consen 244 TNKGSKNVDKK-----G----------KEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKN 308 (399)
T ss_dssp ES-SEEEE-TT-----S-----------EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred EcCCccccCCc-----c----------cccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 98443101100 0 00011222222222222 234343333333333321122346778888889
Q ss_pred HHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh
Q 038499 388 IERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY 467 (609)
Q Consensus 388 ~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~ 467 (609)
++.+.+.|.+. |++|+... .....+...+.. . .+++..+.+.| ++.||.+..- .-|+
T Consensus 309 Ak~La~~L~~~-G~~v~~gg--Td~H~vlvd~~~-~---------------~~~g~~a~~~L-e~~gI~vnkn---~iP~ 365 (399)
T PF00464_consen 309 AKALAEALQER-GFKVVTGG--TDNHQVLVDLRS-F---------------GIDGKEAEKAL-EEAGIIVNKN---TIPG 365 (399)
T ss_dssp HHHHHHHHHHT-T-EEGGGS---SSSEEEEEGGG-G---------------TS-HHHHHHHH-HHTTEE-EEE-----TT
T ss_pred HHHHHHHHhhC-CcEEEECC--CCCCeEEEEecc-c---------------ccchHHHHHHH-HhcCeeeccc---ccCC
Confidence 99999999886 99998642 223333444433 1 15677777777 5679988731 1121
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHH
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP----YYMSNEEFEFTLEAL 518 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~----~~~t~eeid~ll~al 518 (609)
-.. ...+..+||... ..+.++|++.+.+.|
T Consensus 366 d~~---------------------~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~I 399 (399)
T PF00464_consen 366 DRS---------------------PFVPSGLRLGTPALTRRGMKEEDMKEIAELI 399 (399)
T ss_dssp TST---------------------TTT-SEEEEESHHHHHTT--HHHHHHHHHHH
T ss_pred CCC---------------------CCCCCEEEECCHHHHhCCCCHHHHHHHHhhC
Confidence 110 012578999964 345678887776654
|
The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A .... |
| >TIGR03246 arg_catab_astC succinylornithine transaminase family | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.2e-15 Score=157.97 Aligned_cols=346 Identities=14% Similarity=0.141 Sum_probs=202.6
Q ss_pred CCCccccCCCCCCceEEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..+ -|-..+.|.+++.+++...+.. ... .......++.+.|+++++.
T Consensus 24 ~~G~~l~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~-~~~------~~~~~~~~la~~L~~~~~~- 92 (397)
T TIGR03246 24 GEGSRVWDQQGK---EYIDFAGGIAVNALGHAHPELVKALIEQADKLWHI-GNG------YTNEPVLRLAKKLVDATFA- 92 (397)
T ss_pred eecCEEEeCCCC---EEEECCcCHhhccCCCCCHHHHHHHHHHHHhcccc-cCc------cCCHHHHHHHHHHHhhCCC-
Confidence 455666666664 3888765 3567889999999888653211 111 1134467888899998865
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc------------eE
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA------------EV 205 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~v 205 (609)
+ .+.|+.||+.+....+-.+..... ..-.++...+|......|.+....+...+. .+
T Consensus 93 -~-~~~f~~SGseA~e~Alk~ar~~~~---------~~~~~~r~~ii~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (397)
T TIGR03246 93 -D-KVFFCNSGAEANEAALKLARRYAL---------DKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGI 161 (397)
T ss_pred -C-EEEEeCCcHHHHHHHHHHHHHHHH---------hcCCCCCCEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCce
Confidence 2 788888999874443322211000 000123222444454555554444443332 22
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCC-cccc-
Q 038499 206 VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP-YVEI- 279 (609)
Q Consensus 206 v~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~-~~~i- 279 (609)
..++.+ |++++++++. +++++|+++.++++.|.+.+ +++|.++|++||+++|+|+++.+- ....
T Consensus 162 ~~~~~~-----d~~~l~~~l~-----~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr~G~~ 231 (397)
T TIGR03246 162 KHAPYN-----DLAAAKALIS-----DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGEL 231 (397)
T ss_pred EEeCCC-----CHHHHHHHhc-----cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCccccc
Confidence 333332 8999999997 57899999988888887643 889999999999999999997422 1111
Q ss_pred -cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 280 -DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 280 -d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
...... -.+|+++ +.|.+||...+|++++++++ .+.+.....+ .+ ..+.|.
T Consensus 232 ~a~~~~g-v~pDi~t--~~K~lggG~pigav~~~~~i--~~~~~~~~~~-~t----------------------~~~~p~ 283 (397)
T TIGR03246 232 YAYMHYG-VTPDILT--SAKALGGGFPIGAMLTTTEI--AAHLKVGTHG-TT----------------------YGGNPL 283 (397)
T ss_pred hhhhhcC-CCCCEEE--eehhhhCCcceeEEEEcHHH--HHhccCCCcC-CC----------------------CCCCHH
Confidence 001110 1357765 56999754558999999888 3333211000 00 023333
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc-eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN-IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETD 437 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~-i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~ 437 (609)
......++++.. + .+.+.++.+++.+++.+.|+++.. ..++... .....++.+.+.+ ..
T Consensus 284 ~~aaa~a~l~~~--~---~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~v-rg~G~~~~i~~~~-~~------------- 343 (397)
T TIGR03246 284 ACAVAGKVLDLV--N---TPELLAGVKQRHDLFVDGLEKINARYNVFSEI-RGKGLLIGAVLTE-AY------------- 343 (397)
T ss_pred HHHHHHHHHHHH--h---hccHHHHHHHHHHHHHHHHHHHHhcCCCeEee-ecCceEEEEEEcC-ch-------------
Confidence 333333444432 1 234667777788888887765421 1111110 0112233333322 10
Q ss_pred CCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 038499 438 KPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEA 517 (609)
Q Consensus 438 ~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~a 517 (609)
......+++.|.+ .||.+.+. .++++|+++++.+|++|+++++++
T Consensus 344 -~~~~~~~~~~l~~-~Gv~~~~~---------------------------------g~~~lR~~p~~~~t~~~i~~~~~~ 388 (397)
T TIGR03246 344 -QGKAKQFVNAAAE-EGVIALIA---------------------------------GPNVVRFAPSLVISDDDIDEGLAR 388 (397)
T ss_pred -hhHHHHHHHHHHH-CCeEEeec---------------------------------CCCEEEEeCCCCCCHHHHHHHHHH
Confidence 0134577777866 59887621 137899999999999999999999
Q ss_pred HHHHHHh
Q 038499 518 LEFIAIY 524 (609)
Q Consensus 518 l~~v~~~ 524 (609)
|++++..
T Consensus 389 l~~~l~~ 395 (397)
T TIGR03246 389 FERAIEQ 395 (397)
T ss_pred HHHHHHH
Confidence 9988754
|
Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason. |
| >COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2e-15 Score=158.00 Aligned_cols=307 Identities=19% Similarity=0.184 Sum_probs=190.7
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW- 198 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (609)
+.....+++.++++-|+.. .+.|. ||.. ||..++..+ +++|| .|+++...|.+...-+
T Consensus 62 nPT~~~lE~~~a~LEg~~~--~~afs-SGma-AI~~~~l~l---------------l~~GD--~vl~~~~~YG~t~~~~~ 120 (396)
T COG0626 62 NPTRDALEEALAELEGGED--AFAFS-SGMA-AISTALLAL---------------LKAGD--HVLLPDDLYGGTYRLFE 120 (396)
T ss_pred CccHHHHHHHHHHhhCCCc--EEEec-CcHH-HHHHHHHHh---------------cCCCC--EEEecCCccchHHHHHH
Confidence 3446678888888888763 46664 7777 566654444 58899 6888877777765443
Q ss_pred ---HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 199 ---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 199 ---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
+..|+++.+++.. +.+++++++.+ ++|++|++..|+|||-.+.|+++|+++||++|++++||.+.+.|
T Consensus 121 ~~l~~~gi~~~~~d~~-----~~~~~~~~~~~----~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP 191 (396)
T COG0626 121 KILQKFGVEVTFVDPG-----DDEALEAAIKE----PNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATP 191 (396)
T ss_pred HHHHhcCeEEEEECCC-----ChHHHHHHhcc----cCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccc
Confidence 4578999988754 56677777763 48999999999999999999999999999999999999998877
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
+..-.+. .|+|+++-|..|+++|-.- .|+++.+++.. ...... ..+..
T Consensus 192 ~~q~PL~----~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~--~~~~~~------------------------~~~~~ 241 (396)
T COG0626 192 VLQRPLE----LGADIVVHSATKYLGGHSDVLGGVVLTPNEEL--YELLFF------------------------AQRAN 241 (396)
T ss_pred cccChhh----cCCCEEEEeccccccCCcceeeeEEecChHHH--HHHHHH------------------------HHHhh
Confidence 5433222 2899999999999998743 46555555541 111000 00100
Q ss_pred CCC-hhHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcceEEE
Q 038499 354 GGT-PQVIQMIRAALAFWVK-EYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAILSF 417 (609)
Q Consensus 354 ~gt-p~i~~~~~aal~~~~~-~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~~f 417 (609)
.|+ ..... + |++. ...-.....++..+.+..+.+.|.+.|.++ |+-|.- ....+.+||
T Consensus 242 ~G~~l~p~d---A---~l~lRGlkTL~~Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf 315 (396)
T COG0626 242 TGAVLSPFD---A---WLLLRGLRTLALRMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSF 315 (396)
T ss_pred cCCCCCHHH---H---HHHHhccchHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEE
Confidence 111 11111 1 1111 111233445666777888889999988885 665531 126678999
Q ss_pred EeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCC
Q 038499 418 NIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVK 494 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~ 494 (609)
.+.. +. ....+.+.| +.+.+...-|..-+ .|.......+..+... -.|+.
T Consensus 316 ~l~~-~~----------------~~~~f~~~L-~l~~~a~SlGgveSLi~~pa~~th~~~~~~~r~---------~~Gi~ 368 (396)
T COG0626 316 ELKN-EE----------------AAKKFLDSL-KLFKLAESLGGVESLISHPATMTHASIPLEERA---------KAGIT 368 (396)
T ss_pred EeCC-hH----------------HHHHHHHhC-CccEEeccCCCcccccccccccCcccCCHhHHH---------hcCCC
Confidence 9886 11 234455555 45565566554332 1211111122221111 14667
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 495 PGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 495 ~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
++.||+|++.-..++=++.+-++|+
T Consensus 369 ~~LvRlSVGlEd~eDLi~Dl~~Al~ 393 (396)
T COG0626 369 DGLVRLSVGLEDVEDLIADLEQALA 393 (396)
T ss_pred CCeEEEEecCCCHHHHHHHHHHHHH
Confidence 8999999997544444444444443
|
|
| >PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates [] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=168.20 Aligned_cols=286 Identities=20% Similarity=0.217 Sum_probs=175.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
....++++.+|+.+|++. -.|.-+|||.++..++.++ +++|| .|+++...|-|...++..
T Consensus 66 G~I~eAe~~aA~~fGAd~---t~flvnGsT~g~~a~i~a~---------------~~~gd--~VLv~RN~HkSv~~alil 125 (417)
T PF01276_consen 66 GIIKEAEELAARAFGADK---TFFLVNGSTSGNQAMIMAL---------------CRPGD--KVLVDRNCHKSVYNALIL 125 (417)
T ss_dssp THHHHHHHHHHHHHTESE---EEEESSHHHHHHHHHHHHH---------------TTTTC--EEEEETT--HHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCe---EEEEecCchHHHHHHHHHh---------------cCCCC--EEEEcCCcHHHHHHHHHH
Confidence 458899999999999973 4555599999999988877 48999 699999999999999999
Q ss_pred cCceEEEEecCCC-----CCCCH-----HHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 201 SLAEVVEIGLDDD-----GLLDI-----EALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 201 ~G~~vv~v~~~~~-----g~ld~-----e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
.|+++++++...+ +.+++ +.++++|+++.....++++++++| |..|++.|+++|+++||++|+.++||+
T Consensus 126 ~ga~Pvyi~p~~~~~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~P-TY~Gv~~di~~I~~~~h~~~~~llvDE 204 (417)
T PF01276_consen 126 SGAIPVYIPPEDNEYGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSP-TYYGVCYDIKEIAEICHKHGIPLLVDE 204 (417)
T ss_dssp HTEEEEEEEEEE-TTS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS--TTSEEE-HHHHHHHHCCTECEEEEE-
T ss_pred cCCeEEEecCCccccCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCC-CCCeEEECHHHHHHHhcccCCEEEEEc
Confidence 9999999976421 24566 999999987522212456888876 466999999999999999999999999
Q ss_pred cccCCc--ccccCCCCCCCCcc-------EEEEcCCCCCCCCCCcEEEEEechh-hccCCCCCCccCCCceEeecccccc
Q 038499 271 AASGPY--VEIDVRSGQTDGYD-------AIFLSTHKFLGGPGSPGILLMTKAL-YQLGSFPPSTCGGGTVNYVNGFNEK 340 (609)
Q Consensus 271 A~~~~~--~~id~~~~~~~~~D-------~v~~S~hK~lggp~g~G~L~~~~~~-~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (609)
||++-. .++.-... ..++| +++.|.||.+++....++|.++.+. +..+++
T Consensus 205 AhGah~~F~~lp~~a~-~~gad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~------------------- 264 (417)
T PF01276_consen 205 AHGAHFGFHPLPRSAL-ALGADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERV------------------- 264 (417)
T ss_dssp TT-TTGGCSGGGTTCS-STTSS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHH-------------------
T ss_pred cccccccCCCCccchh-hccCccccccceeeeechhhcccccccceEEEecCCCcccHHHH-------------------
Confidence 987521 12211111 23778 9999999999988888999999875 210111
Q ss_pred cccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh---CCCCceEEeCCCCCCCcceE
Q 038499 341 DTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEETYIERALERL---LPNQNIKILGNTSTKRQAIL 415 (609)
Q Consensus 341 ~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L---~~~p~i~v~~~~~~~r~~~~ 415 (609)
...-......+|+.+-+ +-.+..++ ....| +.+.++..++++.+++++ .++++++++++..-...+
T Consensus 265 -----~~~l~~~~TTSPSY~lmASlD~a~~~m-~~~~G-~~l~~~~i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~-- 335 (417)
T PF01276_consen 265 -----NEALSMHQTTSPSYPLMASLDVARAQM-EEEEG-RELLEEAIELAEEFRKKINRLNDIWGFKVLGPEDVGGEG-- 335 (417)
T ss_dssp -----HHHHHHHS-SS--HHHHHHHHHHHHHH-SHHHH-HHHHHHHHHHHHHHHHHHHHHCCT-SSEESS-SEECTCC--
T ss_pred -----HHHHHHHcCCChHHHHHHHHHHHHHHH-hhhhh-HHHHHHHHHHHHHHHHHHHhcCCCceEecCCccccCCcc--
Confidence 00012233445554433 22332222 01223 344455666777777777 788999999875311111
Q ss_pred EEEeccCCCCCcC----CCC------------C-----C-CCCCCCCChHHHHHHHhhhcCcEec
Q 038499 416 SFNIHSSTINSSL----GEN------------T-----K-TETDKPLHGPFVATLLNDLFGIQAR 458 (609)
Q Consensus 416 ~f~~~~~~~~~~~----~~~------------~-----~-~~~~~~l~~~~v~~~L~~~~GI~v~ 458 (609)
+|...+ +..+.. .++ + + ..++.++++..+.+.|.++ ||++.
T Consensus 336 ~~~~~~-~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~-~I~~E 398 (417)
T PF01276_consen 336 CWDLDP-GENWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPGYIVEKYLREH-GIQVE 398 (417)
T ss_dssp GCB--T-T-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---HHHHHHHHHHT-TEE-S
T ss_pred ccccCc-cccchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCHHHHHHHHHHc-CCEEE
Confidence 111111 111100 000 1 1 1145578899999999775 99987
|
One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D. |
| >TIGR01885 Orn_aminotrans ornithine aminotransferase | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-14 Score=155.43 Aligned_cols=346 Identities=17% Similarity=0.180 Sum_probs=207.7
Q ss_pred CccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 038499 66 NAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE 139 (609)
Q Consensus 66 ~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~ 139 (609)
+.++...-|+ -|+|..++ |-..+.|.+++.+.+... ..... . .......++.+.+++++|.
T Consensus 28 g~~~~~~~g~---~~lD~~s~~~~~~~Gh~~p~v~~a~~~~~~~~-~~~~~-----~-~~~~~~~~l~~~l~~~~~~--- 94 (401)
T TIGR01885 28 GVHVWDVEGK---RYLDFLSAYSAVNQGHCHPKIVKALTEQAQKL-TLSSR-----A-FYNDVFGEFAEYVTKLFGY--- 94 (401)
T ss_pred cCEEEeCCCC---EEEEcccCHhhccCCCCCHHHHHHHHHHHHhc-ccccc-----c-cCCHHHHHHHHHHHhhcCC---
Confidence 3444444443 37776543 334788999998887543 11111 0 1245677889999999975
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc-hHHHHHHcC------------ceEE
Q 038499 140 DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS-NLLSWRQSL------------AEVV 206 (609)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~~~~G------------~~vv 206 (609)
+.++|++||+.+....+-.+..... + .+.+.+++ ..|+.....||+ ....+...+ ..+.
T Consensus 95 ~~~~~~~SGs~A~e~ai~~a~~~~~----~---~~~~~~~~-~~i~~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (401)
T TIGR01885 95 DKVLPMNTGAEAVETAIKLARKWGY----K---VKGIPENQ-AIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFK 166 (401)
T ss_pred CEEEEeCccHHHHHHHHHHHHHHhh----h---hcCCCCCC-CEEEEECCCcCcccHHHHhCcCCcccccccCCCCCCce
Confidence 2688888999874444332221000 0 00012333 367777777664 344444332 1233
Q ss_pred EEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Ccc--cc
Q 038499 207 EIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYV--EI 279 (609)
Q Consensus 207 ~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~--~i 279 (609)
.++.+ |+++|++++++. .+++.+++++.+.+++|.+.| +++|.++|++||+++++|+++.. +.. .+
T Consensus 167 ~~~~~-----d~~~le~~l~~~--~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~g~~G~~~ 239 (401)
T TIGR01885 167 KIPYN-----NLEALEEALEDH--GPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL 239 (401)
T ss_pred EeCCC-----CHHHHHHHHHhc--CCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhh
Confidence 34332 789999988642 246678889999999999987 89999999999999999999753 211 11
Q ss_pred cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 280 DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
.+... ....|++++| |.++|. ..+|+++.++++ ++.+.....+ . ...+.|.
T Consensus 240 ~~~~~-~~~~di~~~g--K~l~~g~~~ig~v~~~~~i--~~~~~~~~~~----------------------~-t~~~~p~ 291 (401)
T TIGR01885 240 CVDHE-NVKPDIVLLG--KALSGGVYPVSAVLADDDV--MLTIKPGEHG----------------------S-TYGGNPL 291 (401)
T ss_pred HHhhc-CCCCCEEEee--ccccCCCCCcEEEEEcHHH--HhhccCCCCC----------------------C-CCCCCHH
Confidence 11100 1146888765 999864 348899998887 3333221100 0 0123444
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK 438 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (609)
....+.+++... +. +.+.++.+++.+++.+.|++++ ..++... .....++.+.+.. +. .
T Consensus 292 ~~~aa~a~L~~i--~~---~~l~~~~~~~~~~~~~~L~~l~-~~~~~~~-~g~g~~~~i~~~~-~~-------------~ 350 (401)
T TIGR01885 292 ACAVAVAALEVL--EE---EKLAENAEKLGEIFRDQLKKLP-KPIITEV-RGRGLLNAIVIDE-SK-------------T 350 (401)
T ss_pred HHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHhcc-CCceeEE-eecCeeEEEEecc-Cc-------------c
Confidence 444444555443 21 2355677788899999998763 2222211 1133444444433 10 0
Q ss_pred CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 439 PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 439 ~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
......+++.|.+ .||.+.++ .++.+||++++.+|++|+++++++|
T Consensus 351 ~~~~~~l~~~l~~-~Gv~v~~~---------------------------------~~~~lRi~p~l~~t~~~i~~~l~~l 396 (401)
T TIGR01885 351 GRTAWDLCLKLKE-KGLLAKPT---------------------------------HGNIIRLAPPLVITEEQLDEGLEII 396 (401)
T ss_pred hhHHHHHHHHHHh-CCEEEEec---------------------------------CCCEEEEeCCccCCHHHHHHHHHHH
Confidence 1235678888865 59988631 1478999999999999999999999
Q ss_pred HHHH
Q 038499 519 EFIA 522 (609)
Q Consensus 519 ~~v~ 522 (609)
++++
T Consensus 397 ~~~l 400 (401)
T TIGR01885 397 KKVI 400 (401)
T ss_pred HHHh
Confidence 8764
|
This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis. |
| >KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.9e-16 Score=158.81 Aligned_cols=343 Identities=16% Similarity=0.137 Sum_probs=228.4
Q ss_pred EecCC-CCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCCh-HHHHHHHHH
Q 038499 80 YADHT-ASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSG-TTAAIKRLQ 157 (609)
Q Consensus 80 yld~~-a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sG-ttaal~~l~ 157 (609)
||..+ +.|++.+.+++.+...-+. ..+ +..-.++.....++++.+|+++|.+. .++|. .| +|.+++. -
T Consensus 146 YLGFa~~~g~ca~~~~~~~~kygl~----~cs--s~~e~G~~~~hkelE~l~A~f~g~e~--a~vF~-mGf~TNs~~~-p 215 (519)
T KOG1357|consen 146 YLGFAQSVGPCAEASLKSFDKYGLS----RCS--SRHEAGTTEEHKELEELVARFLGVED--AIVFS-MGFATNSMNI-P 215 (519)
T ss_pred cccccccCCcCChHHHHHHHHhccc----ccc--cchhcccHHHHHHHHHHHHHhcCCcc--eEEEe-ccccccccCc-c
Confidence 44444 3467778888877654432 222 12223467888999999999999984 57775 44 2222211 1
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc--CCC--
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD--AKR-- 233 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~--~~~-- 233 (609)
. .+.+|. .|+.....|.|....+|..|+.++....+ |+++||+.|++... +++
T Consensus 216 ~----------------l~~~gs--LIiSDelNHaSi~~GaRLSgAtiRVfkHN-----dm~~LEr~Lrd~I~~gqP~Th 272 (519)
T KOG1357|consen 216 S----------------LLGKGS--LIISDELNHASLITGARLSGATTRVFRHN-----DMQGLERLLRDAIVYGQPKTH 272 (519)
T ss_pred e----------------eecCCc--ceeeccccchheeccccccCceEEEEecC-----CHHHHHHHHHHHHhcCCCCcC
Confidence 1 135666 79999999999999999999999999877 77888887765321 122
Q ss_pred -c---eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc---CCC---CCCCCccEEEEcCCCCCCCC
Q 038499 234 -P---ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID---VRS---GQTDGYDAIFLSTHKFLGGP 303 (609)
Q Consensus 234 -~---~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id---~~~---~~~~~~D~v~~S~hK~lggp 303 (609)
+ .+++.....+.-|.+.++.++.+++++|.++++.|+||+.|..... +.+ .+...+|++...+.|.+|+.
T Consensus 273 rp~kki~iivegiysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSfga~ 352 (519)
T KOG1357|consen 273 RPWKKILICVEGIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSFGAA 352 (519)
T ss_pred CcchheeeeeccceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhcccc
Confidence 1 2777788888999999999999999999999999999998766321 111 12236799999999999854
Q ss_pred CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcC---HHHH
Q 038499 304 GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIG---HEVI 380 (609)
Q Consensus 304 ~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g---~~~i 380 (609)
+ |++..++++ ++.++.. . .++-| ...-.|++.+.+..++.... .+.| -++.
T Consensus 353 G--Gyiagsk~l--id~lrt~-s--~~~~y------------------at~~sppvaqq~~ssl~~i~-G~dgt~~g~~k 406 (519)
T KOG1357|consen 353 G--GYIAGSKEL--IDYLRTP-S--PSALY------------------ATSLSPPVAQQILTSVKHIM-GEDGTNRGRQK 406 (519)
T ss_pred c--ceecCcHHH--HhhhccC-C--Cceee------------------cccCChHHHHHHHHHHHhhc-CCCcccHHHHH
Confidence 4 889999988 4433211 0 01001 11234556665555544432 2222 2455
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccC
Q 038499 381 KKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGG 460 (609)
Q Consensus 381 ~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G 460 (609)
.++..++..+++..|+.. ++.++++.++ |++-+.+.. +. ...++.+.|+++ +|.+..+
T Consensus 407 ~~~l~~ns~yfr~~l~~~-gfivyG~~dS---pVvplll~~-~~----------------k~~~f~r~~l~~-nigvVvv 464 (519)
T KOG1357|consen 407 IERLAENSRYFRWELQKM-GFIVYGNNDS---PVVPLLLYG-PA----------------KIVAFSREMLER-NIGVVVV 464 (519)
T ss_pred HHHHHhhhHHHHHhhhcC-cEEEecCCCC---CcceeeecC-cc----------------cccHHHHHHHhc-CceEEEE
Confidence 667778888999999886 9999998654 444444444 21 123556666554 7777665
Q ss_pred cccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhccccc
Q 038499 461 CACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFL 529 (609)
Q Consensus 461 ~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~ 529 (609)
...+.|.- .+.+|++.+..++.|+++++++.+..+-+..+.+.
T Consensus 465 gfPatpl~--------------------------e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~~~~~~~ 507 (519)
T KOG1357|consen 465 GFPATPLL--------------------------ESRARFCLSASHTKEDLDRALEVIDRVGDEDGVKY 507 (519)
T ss_pred eCCCchHH--------------------------HhHHHhhhcccccHHHHHHHHHHHhhhchhhccee
Confidence 55443421 25679998888999999999999999886655443
|
|
| >PLN02624 ornithine-delta-aminotransferase | Back alignment and domain information |
|---|
Probab=99.70 E-value=3e-14 Score=156.13 Aligned_cols=346 Identities=17% Similarity=0.183 Sum_probs=198.6
Q ss_pred CCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCC
Q 038499 65 KNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQ 138 (609)
Q Consensus 65 ~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~ 138 (609)
.+.++.+..|+ -|+|..+. |-..+.|.+++.+++.... .... ........++.+.++++++.
T Consensus 65 ~G~~l~d~dG~---~ylD~~sg~~~~~~Gh~~p~v~~ai~~ql~~~~-~~~~------~~~~~~~~~la~~L~~~~~~-- 132 (474)
T PLN02624 65 KGSRIWDPEGK---KYLDFLSAYSAVNQGHCHPKIIKALTEQAEKLT-LSSR------AFYNDKFPEFAEYLTSMFGY-- 132 (474)
T ss_pred eeCEEEECCCC---EEEEcccchhcccCCCCCHHHHHHHHHHHHhcC-Cccc------ccCCHHHHHHHHHHHhhcCC--
Confidence 34555555554 48887543 4557899999999887531 1110 01234566788888888864
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC------------ceE
Q 038499 139 EDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------AEV 205 (609)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------~~v 205 (609)
+.++|+.+|+++.-.++-.+...... + +. .++++..|+.-...||+.. ..+...+ ..+
T Consensus 133 -~~~~f~~SGseA~e~AlklAr~~~~~---~----~g-~~~~~~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~ 203 (474)
T PLN02624 133 -DMVLPMNTGAEGVETAIKLARKWGYE---K----KG-IPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGH 203 (474)
T ss_pred -CeEEEeCChHHHHHHHHHHHHHHHHh---h----cC-CCCCCcEEEEECCCcCCCCHHHhhcCCCccccccCCCCCCCc
Confidence 37889988988633322111100000 0 00 0222334555555555542 2222111 112
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Cccc--
Q 038499 206 VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVE-- 278 (609)
Q Consensus 206 v~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~-- 278 (609)
..++.+ |++.|++.++.. .+++.+++++.++|++|.+.| +++|.++|++||+++|+|++|.+ +...
T Consensus 204 ~~~~~~-----d~~~l~~~l~~~--~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~tG~GrtG~~ 276 (474)
T PLN02624 204 LKVDFG-----DLDALEKIFEED--GDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKM 276 (474)
T ss_pred eEeCCC-----CHHHHHHHHHhC--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcCcCcch
Confidence 333332 789999988632 246789999999999999988 99999999999999999999873 2111
Q ss_pred --ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCC
Q 038499 279 --IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG 355 (609)
Q Consensus 279 --id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~g 355 (609)
.+... ...|++++| |.+|++ ..+|++++++++ +..+.+...+ . ...+
T Consensus 277 ~a~~~~~---i~pDiv~ls--K~lggG~~pigav~~~~~i--~~~~~~~~~~-~----------------------T~~g 326 (474)
T PLN02624 277 LACDWEE---VRPDVVILG--KALGGGVIPVSAVLADKDV--MLCIKPGEHG-S----------------------TFGG 326 (474)
T ss_pred hhHHhcC---CCCCEEEec--ccccCCCCcceeeeecHHH--HhHhccCCcC-C----------------------CCCC
Confidence 11111 146888875 999876 358999988877 3333222110 0 0023
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCc-eEEeCCCCCCCcceEEEEeccCCCCCcCCC
Q 038499 356 TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQN-IKILGNTSTKRQAILSFNIHSSTINSSLGE 430 (609)
Q Consensus 356 tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~-i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~ 430 (609)
.|.....+.+++... +. +.+.++..++.+++++.|.+ ++. +.-+. .+..++.+.+.. +.
T Consensus 327 ~pl~~aaa~aaLe~l--~~---~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vr----g~G~~~~i~l~~-~~------ 390 (474)
T PLN02624 327 NPLASAVAMAALQVV--QD---EKLAERSAKLGQELRDQLQKIQKQFPKLIKEVR----GRGLLNAVVLNS-PK------ 390 (474)
T ss_pred CHHHHHHHHHHHHHH--Hh---chHHHHHHHHHHHHHHHHHHHHHhCCCceEEEE----eeEEEEEEEecC-CC------
Confidence 333333334444432 11 23344455555555555543 332 21111 122344433322 10
Q ss_pred CCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHH
Q 038499 431 NTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEE 510 (609)
Q Consensus 431 ~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ee 510 (609)
. .......+++.|.+ .||.+.++ .++++||++++.+|++|
T Consensus 391 -----~-~~~~a~~~~~~L~e-~GV~v~p~---------------------------------~~~~lR~~p~l~~t~e~ 430 (474)
T PLN02624 391 -----L-GPVSAYDVCLKLKE-RGLLAKPT---------------------------------HDTIIRLAPPLSISEDE 430 (474)
T ss_pred -----c-ChHHHHHHHHHHHh-CCeEEecC---------------------------------CCCEEEEECCccCCHHH
Confidence 0 00124577888865 69988632 13789999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 038499 511 FEFTLEALEFIAIY 524 (609)
Q Consensus 511 id~ll~al~~v~~~ 524 (609)
+++++++|++++..
T Consensus 431 id~~l~~L~~~l~~ 444 (474)
T PLN02624 431 LQECSKALSDVLEH 444 (474)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988755
|
|
| >PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.3e-14 Score=154.54 Aligned_cols=345 Identities=13% Similarity=0.150 Sum_probs=194.9
Q ss_pred CCCccccCCCCCCceEEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|++ |+|..+ .|-..+.|.+++.+.+........ . .......++.+.++++.+.
T Consensus 29 ~~G~~~~d~dG~~---~iD~~~~~~~~~lGh~~p~v~~a~~~~~~~~~~~~~----~---~~~~~~~~l~~~l~~~~~~- 97 (403)
T PRK05093 29 GEGSRVWDQQGKE---YIDFAGGIAVTALGHCHPALVKALKEQGEKLWHISN----V---FTNEPALRLAKKLIDATFA- 97 (403)
T ss_pred eecCEEEeCCCCE---EEEcCcCHHhccCCCCCHHHHHHHHHHHHhcCcccC----c---cCCHHHHHHHHHHHhhCCC-
Confidence 4456666666643 888754 356778999999888764321111 0 0123345788888888764
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc------------CceE
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS------------LAEV 205 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~------------G~~v 205 (609)
+.++|+.||+.+...++-.+.... ...-..+...+|.+....|.+....+... ...+
T Consensus 98 --~~~~~~~sGseA~e~a~klar~~~---------~~~~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (403)
T PRK05093 98 --ERVFFANSGAEANEAAFKLARRYA---------CDRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADI 166 (403)
T ss_pred --CEEEEeCchHHHHHHHHHHHHHHH---------hhcCCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCc
Confidence 278888888886443332111100 00001233324444545555444333221 1223
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Cccccc
Q 038499 206 VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVEID 280 (609)
Q Consensus 206 v~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~id 280 (609)
+.++.+ |++++++.+. +++++|+++.+++..|.+.+ +++|.++|++||+++|+|++++. +...-.
T Consensus 167 ~~~~~~-----d~~~l~~~l~-----~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~ 236 (403)
T PRK05093 167 THVPFN-----DLAAVKAVID-----DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDL 236 (403)
T ss_pred EEeCCC-----CHHHHHHHhc-----CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccc
Confidence 444332 7899999887 57888888854444455434 88999999999999999999773 221110
Q ss_pred C--CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 281 V--RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 281 ~--~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
. ... .-..|++ |+.|.+++...+|++++++++ .+.+.....+ ....+.|.
T Consensus 237 ~~~~~~-~~~pdi~--s~sK~l~~G~rig~vv~~~~i--~~~l~~~~~~-----------------------~t~~~~~~ 288 (403)
T PRK05093 237 FAYMHY-GVTPDIL--TSAKALGGGFPIGAMLTTAEI--ASHFKVGTHG-----------------------STYGGNPL 288 (403)
T ss_pred hhhhhc-CCCCCEE--EecccccCCcceEEEEEcHHH--HhhcCCCCCC-----------------------CCCCCCHH
Confidence 0 000 0134654 557999854459999999988 3444321110 00122333
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcce-EEEEeccCCCCCcCCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAI-LSFNIHSSTINSSLGENTKTET 436 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~-~~f~~~~~~~~~~~~~~~~~~~ 436 (609)
....+.+++++. . .+.+.++.+++.+++.+.|+++. .+.+... .+..+. +.+.+.+ +.
T Consensus 289 ~~~aa~a~L~~~--~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~G~~~~~~l~~-~~------------ 348 (403)
T PRK05093 289 ACAVAEAVFDII--N---TPEVLEGVKARRQRFVDGLQKINQKYGVFSE--IRGMGLLIGAELKP-QY------------ 348 (403)
T ss_pred HHHHHHHHHHHH--h---hccHHHHHHHHHHHHHHHHHHHHhhCCCeEe--EeeCceEEEEEecC-cc------------
Confidence 333334444443 1 12344566667777777776541 1111111 111233 3333322 10
Q ss_pred CCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 038499 437 DKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLE 516 (609)
Q Consensus 437 ~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~ 516 (609)
.-....++..|.+ .||.+.++ .++++|+++++.+++++++.+++
T Consensus 349 --~~~~~~~~~~l~~-~Gv~v~~~---------------------------------g~~~lRl~~~~~~~~~~i~~~~~ 392 (403)
T PRK05093 349 --KGRARDFLNAAAE-EGVMVLVA---------------------------------GPDVLRFAPSLVIEEADIDEGLA 392 (403)
T ss_pred --hhHHHHHHHHHHH-CCeEEecC---------------------------------CCCEEEEeCCCCCCHHHHHHHHH
Confidence 0134577777766 49988731 13789999998899999999999
Q ss_pred HHHHHHHh
Q 038499 517 ALEFIAIY 524 (609)
Q Consensus 517 al~~v~~~ 524 (609)
+|++++..
T Consensus 393 ~l~~~l~~ 400 (403)
T PRK05093 393 RFEKAVAK 400 (403)
T ss_pred HHHHHHHH
Confidence 99998764
|
|
| >PRK15029 arginine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-15 Score=164.63 Aligned_cols=173 Identities=18% Similarity=0.196 Sum_probs=133.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
..+.++++..|+.+|++.. .|.-||||.++.+++.++ .++|| .|+++...|-|...++..
T Consensus 205 G~I~eAq~~aA~~fgA~~t---~FlvNGST~gn~a~i~a~---------------~~~gd--~Vlv~RN~HKSv~~al~L 264 (755)
T PRK15029 205 GAFGESEKYAARVFGADRS---WSVVVGTSGSNRTIMQAC---------------MTDND--VVVVDRNCHKSIEQGLIL 264 (755)
T ss_pred cHHHHHHHHHHHHhCCCcE---EEEeCChhHHHHHHHHHh---------------cCCCC--EEEeecccHHHHHHHHHH
Confidence 4688999999999999743 444489999888877765 48999 699999999999999999
Q ss_pred cCceEEEEecCC--C---CCCC-----HHHHHHHHhhhcc-----CCCceEEEEecccCccccccCHHHHHHHHHHhCCe
Q 038499 201 SLAEVVEIGLDD--D---GLLD-----IEALRSKLELYKD-----AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGF 265 (609)
Q Consensus 201 ~G~~vv~v~~~~--~---g~ld-----~e~L~~al~~~~~-----~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~ 265 (609)
.|++++++.... . +.++ ++.++++|.++.. ..+++++++++| |..|++.|+++|+++||++|+.
T Consensus 265 ~ga~Pvyl~P~~~~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~P-TY~Gv~~di~~I~~~~h~~~~~ 343 (755)
T PRK15029 265 TGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDR 343 (755)
T ss_pred cCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECC-CCcceeeCHHHHHHHHHhcCCe
Confidence 999999996432 2 3455 9999999976421 134558888876 4669999999999999999999
Q ss_pred EEEeccccCCc--cc-cc-CCCC-----CCCCcc-EEEEcCCCCCCCCCCcEEEEEech
Q 038499 266 ACFDFAASGPY--VE-ID-VRSG-----QTDGYD-AIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 266 vivD~A~~~~~--~~-id-~~~~-----~~~~~D-~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
++||+||++-. .+ .. ..++ ...|+| +++-|.||.+++....++|.++..
T Consensus 344 llvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~ 402 (755)
T PRK15029 344 LHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREG 402 (755)
T ss_pred EEEECccccccccCccccccccccccccccCCCceEEEEchhhcccchhhhhhheeCCC
Confidence 99999987521 11 11 1111 114788 888999999998777788888654
|
|
| >KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-15 Score=149.77 Aligned_cols=310 Identities=16% Similarity=0.119 Sum_probs=203.4
Q ss_pred HHHHHHHHHHHhC--------CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 123 VHEASNYIKKCLG--------GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 123 ~~e~r~~ia~~~g--------~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
..+.|+.+|+++. .+|+ .++++ +|+|++...++-.|. .||| ..+++.+.|++.
T Consensus 123 l~~frqa~A~Fm~~~r~~~v~fdP~-~~Vv~-~G~T~ane~l~fcLa---------------dpgd--afLvPtPyY~gf 183 (471)
T KOG0256|consen 123 LPSFRQAVAEFMERARGNRVKFDPE-RVVVT-NGATSANETLMFCLA---------------DPGD--AFLVPTPYYPGF 183 (471)
T ss_pred chHHHHHHHHHHHHHhCCCCccCcc-ceEEe-cccchhhHHHHHHhc---------------CCCc--eeeecCCCCCcc
Confidence 4566777777764 3566 78888 788888888887775 7999 799999999988
Q ss_pred HHHHHH-cCceEEEEecCC--CCCCCHHHHHHHHhhhccC-CCceEEEEecccCccccccCHHH---HHHHHHHhCCeEE
Q 038499 195 LLSWRQ-SLAEVVEIGLDD--DGLLDIEALRSKLELYKDA-KRPILGSFSACSNVTGIYSDTRS---IARLLHQYGGFAC 267 (609)
Q Consensus 195 ~~~~~~-~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~-~~~~lv~~s~~sn~TG~~~dl~~---I~~la~~~g~~vi 267 (609)
..-.+. .|++++.|.... +.++++++||+++.+.+.. .+.+-+++++|+||.|.+.+-++ +..++.++++.+|
T Consensus 184 drdl~~rTgveivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI 263 (471)
T KOG0256|consen 184 DRDLRWRTGVEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVI 263 (471)
T ss_pred cccceeccCceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEE
Confidence 655443 599999998765 4589999999999764433 36678999999999999988554 6667789999999
Q ss_pred EeccccCCccc----cc---CCCCC--CCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccc
Q 038499 268 FDFAASGPYVE----ID---VRSGQ--TDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGF 337 (609)
Q Consensus 268 vD~A~~~~~~~----id---~~~~~--~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~ 337 (609)
+|+.+++..-. +. +.... ..+..-++.|.+|=+|-|+ ..|+++...+-+. ......
T Consensus 264 ~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGfRvGviYS~ne~Vv-saA~km------------- 329 (471)
T KOG0256|consen 264 SDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGFRVGVIYSNNEDVV-SAATKM------------- 329 (471)
T ss_pred eehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCceEEEEEEecChHHH-HHHHHH-------------
Confidence 99986642111 11 11110 1133467889999999775 4899998766521 111100
Q ss_pred ccccccccccccccccCCChhHHHHHHHHH---HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcce
Q 038499 338 NEKDTLYLEDIEERESGGTPQVIQMIRAAL---AFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAI 414 (609)
Q Consensus 338 ~~~~~~~~~~~~~r~~~gtp~i~~~~~aal---~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~ 414 (609)
.++ ...+...+...+.+ ..+. ......-..|.+....++.+.|+++ ||..+.. ..++
T Consensus 330 ------------ssf-~~vSs~tQ~~la~LLSD~~f~--~~yl~en~~Rl~~rh~~~~~gLk~l-gI~cl~s----~AGl 389 (471)
T KOG0256|consen 330 ------------SSF-GLVSSQTQYLLASLLSDEEFT--REYLRENNKRLRIRHRYIVEGLKAL-GIPCLKS----NAGL 389 (471)
T ss_pred ------------hhc-cCCcHHHHHHHHHHhchHHHH--HHHHHHHHHHHHHHHHHHHhhHHhc-CCceeec----CCee
Confidence 000 11223333322221 1111 1123445566666677888888887 8888765 4678
Q ss_pred EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCC
Q 038499 415 LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVK 494 (609)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~ 494 (609)
|+|.-.. ..- ....+...-++.+.+.+.-++.+.+|.+|- .+ -
T Consensus 390 F~wvDlr-~lL---------~s~tfe~El~Lw~~i~~~vklnlSpG~s~~---C~------------------------E 432 (471)
T KOG0256|consen 390 FCWVDLR-KLL---------TSLTFEGELELWERILDNVKLNLSPGSSCH---CH------------------------E 432 (471)
T ss_pred EEEEEhH-Hhc---------CcCChHHHHHHHHHHHHhhccccCCCCcce---ec------------------------C
Confidence 8887543 110 011122233566666676799999997765 12 2
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 495 PGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 495 ~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
|||+|++|.. +.++.++-.++.|+.++.
T Consensus 433 pGWFRvcFAn-~~~~t~~~am~Ri~~~~~ 460 (471)
T KOG0256|consen 433 PGWFRVCFAN-MSEETLEVAMRRLKQFLD 460 (471)
T ss_pred CCeEEEEecc-CCHHHHHHHHHHHHHHHH
Confidence 7999999963 455555658888888777
|
|
| >KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=9.4e-15 Score=149.14 Aligned_cols=326 Identities=16% Similarity=0.097 Sum_probs=200.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCCC--CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 118 HTTNMVHEASNYIKKCLGGGQE--DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 118 ~~~~~~~e~r~~ia~~~g~~~~--~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
+..++...+++.....+..++. ..|++| +|.|.++..+++.+ +++|| .|++..+.+++.+
T Consensus 101 G~peLl~fik~h~~~~ih~p~~~~wdiiit-~G~t~~l~~~l~~~---------------~N~gd--~vlie~~ty~~AL 162 (472)
T KOG0634|consen 101 GIPELLLFIKDHNRPTIHAPPYKNWDIIIT-NGNTDGLFKVLRTL---------------INRGD--HVLIEEYTYPSAL 162 (472)
T ss_pred CcHHHHHHHHHhccccccCCCCCCceEEEe-cCCchHHHHHHHHh---------------hcCCC--ceEEecccchHHH
Confidence 3445555555543333333322 378898 78888999998887 48899 8999999999999
Q ss_pred HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC----CCce-EEEEecccCccccccCHH---HHHHHHHHhCCeEE
Q 038499 196 LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA----KRPI-LGSFSACSNVTGIYSDTR---SIARLLHQYGGFAC 267 (609)
Q Consensus 196 ~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~----~~~~-lv~~s~~sn~TG~~~dl~---~I~~la~~~g~~vi 267 (609)
.+.+..|++++.|++|.+| +++|.|++.+...... ++++ +..+...+||||...+++ +|.+||++|++++|
T Consensus 163 ~s~~a~gv~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIV 241 (472)
T KOG0634|consen 163 QSMEALGVKIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIV 241 (472)
T ss_pred HhccccCceEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEE
Confidence 9999999999999998877 7999999999764432 4565 778999999999998864 69999999999999
Q ss_pred EeccccCCccc-------c----------------cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCC
Q 038499 268 FDFAASGPYVE-------I----------------DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPS 324 (609)
Q Consensus 268 vD~A~~~~~~~-------i----------------d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~ 324 (609)
.|+.+..-... . ++..++.+|..+-.-|++|.++....+|++.+++.+ ++.+
T Consensus 242 eDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGlRlG~it~~~~~--l~ri--- 316 (472)
T KOG0634|consen 242 EDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGLRLGWITGNSLF--LKRI--- 316 (472)
T ss_pred ecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcceeEEeecCHHH--HHHH---
Confidence 99986532111 0 011112234334455899999844569999999876 3332
Q ss_pred ccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHhCC-CCc
Q 038499 325 TCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKE--YIGHEVIKKQEETYIERALERLLP-NQN 400 (609)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~--~~g~~~i~~~~~~l~~~~~~~L~~-~p~ 400 (609)
...++. -..+...+.+.+ .+.+..|..+ ...+..++......+..+..+|.+ +|.
T Consensus 317 l~~ae~---------------------~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~ 375 (472)
T KOG0634|consen 317 LDLAEV---------------------ATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPK 375 (472)
T ss_pred hhhcce---------------------eecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 111111 001111222322 3333334221 011233333333444455555543 343
Q ss_pred --eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCC-hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChh
Q 038499 401 --IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLH-GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEA 477 (609)
Q Consensus 401 --i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~-~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~ 477 (609)
+++..| ..+.|.++-.+ -...+ +...++ .+++...+..++||.+..|..+..-....
T Consensus 376 ~~~~~~~P----~aGmFiwv~i~-~~~~~--------~~~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s------- 435 (472)
T KOG0634|consen 376 SVCEYHPP----KAGMFIWVEIP-YINFD--------TKKSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESS------- 435 (472)
T ss_pred CeeEEecC----CcceEEEEEec-ccccc--------cccchHHHHHHHHHHHHHCCeEEecCceeEEcCccC-------
Confidence 455544 56777666553 11000 111133 44555555567899999887665321110
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 478 QSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
-.+-++|+++.+. ..|+++..++.+..++.+
T Consensus 436 ---------------~~kiffRls~a~a-~~e~l~~g~~rf~~~ike 466 (472)
T KOG0634|consen 436 ---------------WSKIFFRLSIAFA-EPEKLDEGIERFGSVIKE 466 (472)
T ss_pred ---------------CCcceEEEEeecC-CHHHHHHHHHHHHHHHHH
Confidence 0124899999754 667888888877777654
|
|
| >TIGR00461 gcvP glycine dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.7e-14 Score=162.07 Aligned_cols=310 Identities=12% Similarity=0.092 Sum_probs=203.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
.+.+.-+.+-+.++.++++.|.+.. +..+. .++|++..+++.+.. ...+++..|+|++..||..
T Consensus 103 isQG~Le~l~e~Qt~i~eLtGm~~a-NaSl~-d~atA~aEa~~~a~~--------------~~~~~~~~vlv~~~~hP~~ 166 (939)
T TIGR00461 103 ISQGRLEALLNFQTVVSDLTGLPVA-NASLL-DEGTAAAEAMALSFN--------------VSKKKANKFFVAKDLHPQT 166 (939)
T ss_pred hhhHHHHHHHHHHHHHHHHHCCChh-hhhcc-chhhHHHHHHHHHHH--------------hhcCCCCEEEECCCCCcch
Confidence 4556778888999999999999866 44454 466666665555432 1222233799999999998
Q ss_pred HHHHH----HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~~~----~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
...++ ..|.+|+.++ +++|++.+ ++..+++. ..|.+|.+.|+++|++++|++|++++++.
T Consensus 167 ~~v~~t~a~~~g~~v~~~~--------~~~l~~~~-------~~~~v~~q-~Pn~~G~ied~~~i~~~~h~~gal~~~~a 230 (939)
T TIGR00461 167 KSVLHTRAKPFGIEVIVVD--------CSDIKKAV-------DVFGCLLQ-YPATDGSILDYKQLIDALHSHKSLVSVAA 230 (939)
T ss_pred HHHHHHHHHhcCcEEEEEc--------HHHHhhcC-------CEEEEEEE-CCCCCeEEecHHHHHHHHHHcCCEEEEEe
Confidence 87766 4688988874 44555443 24444444 45788999999999999999999999965
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCC-----CCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFL-----GGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~l-----ggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
-........+..++ |+|+++.+.++|. |||. .|++.+++++ .+.++....|.. .+...........+.
T Consensus 231 d~~al~ll~~Pge~---GaDi~vg~~q~fg~p~g~GGP~-aG~~a~~~~l--~r~lPgrivG~s-~D~~G~~~~~l~Lqt 303 (939)
T TIGR00461 231 DLMALTLLTPPGHY---GADIVLGSSQRFGVPMGYGGPH-AAFFAVKDEY--NRKMPGRIVGVS-KDALGNTALRLALQT 303 (939)
T ss_pred chHHhCCcCCHHHc---CCcEEeeCCCccCCCCCCCCCc-eeeeeecHhh--HhhCCCCceeEE-ecCCCCccceeeccc
Confidence 43322222222233 8999987777663 5666 7999999998 556655444421 111000000001222
Q ss_pred ccccccccCCChhHHHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEec
Q 038499 346 EDIEERESGGTPQVIQM-----IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIH 420 (609)
Q Consensus 346 ~~~~~r~~~gtp~i~~~-----~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~ 420 (609)
.....|.+.+|+||... +++++-.......|.+.|.++...++.++.+.|.+ .|+++..+ +....+.+...
T Consensus 304 ReqhIrRekAtSNICt~qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~-~G~~~~~~---~fF~~~~v~~~ 379 (939)
T TIGR00461 304 REQHIRRDKATSNICTAQVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLEN-DPHELINK---TWFDTLTVKVG 379 (939)
T ss_pred ccccccccccCcchhHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHh-CCCcccCC---CccceEEEEeC
Confidence 22345666788776432 22332122234567889999999999999999988 58988754 12222333322
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRI 500 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRl 500 (609)
. .+...+.+.|.+ .||.++.. ..+.+++
T Consensus 380 ~------------------~~~~~i~~~~~~-~gi~l~~~---------------------------------~~~~i~~ 407 (939)
T TIGR00461 380 N------------------GISSELLKAAEE-FNINLRAV---------------------------------DTTTVGI 407 (939)
T ss_pred C------------------CCHHHHHHHHHH-CCCeeeec---------------------------------CCCEEEE
Confidence 1 246788888866 59987721 1368999
Q ss_pred ecCCCCCHHHHHHHHHHHH
Q 038499 501 SFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 501 s~~~~~t~eeid~ll~al~ 519 (609)
|++.++|++|++.+++++.
T Consensus 408 s~~E~~t~~di~~l~~~~~ 426 (939)
T TIGR00461 408 ALDETTTKADVENLLKVFD 426 (939)
T ss_pred EeecCCCHHHHHHHHHHhc
Confidence 9999999999999999995
|
This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment. |
| >COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-14 Score=146.16 Aligned_cols=343 Identities=17% Similarity=0.200 Sum_probs=224.3
Q ss_pred CCCC--ChHHHHHHHHHhhcCCccCC--CCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHh
Q 038499 85 ASGR--SLRYIENYIINNVLPFYGNT--HTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVM 160 (609)
Q Consensus 85 a~g~--~~~~v~~ai~~~~~~~~~n~--~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l 160 (609)
++|| .|+.|++...+.+..+.+.. -.+.|+.+........++++.++++++.+.+..|+|+.+|+|+...++..-|
T Consensus 10 saGPa~lp~~vL~~a~~e~~~~~g~g~svme~SHRsk~~~~v~~~a~~~lreLl~iPd~Y~VlflqGGat~qf~~~p~nL 89 (365)
T COG1932 10 SAGPAALPPEVLQQAQKELLDWNGLGMSVMEISHRSKEFKNVLEEAEKDLRELLNIPDDYKVLFLQGGATGQFAMAPMNL 89 (365)
T ss_pred CCCcccCCHHHHHHHHHHHhhhccCCcceeeeccccHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCccHHHHHHHHHhh
Confidence 3355 46788888888887664411 1123456677788999999999999999998899999999998777765544
Q ss_pred cccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc--eEEEEecCC---CCCCCHHHHHHHHhhhccCCCce
Q 038499 161 GIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA--EVVEIGLDD---DGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~--~vv~v~~~~---~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
+.......|.....+..+...+ +..+- .+..+.... ....+++... +. ++..
T Consensus 90 ---------------l~~~~~~yv~~g~Ws~~a~~eA-~~~~~~~~~~~~~~~~~~~~~iP~~~~~~--~~-----~~~a 146 (365)
T COG1932 90 ---------------LGKRGTDYVDTGAWSEFAIKEA-KKVGKQPKLIDARIEEAGYGSIPDLSKWD--FS-----DNDA 146 (365)
T ss_pred ---------------hcccCceeEeeeehhHhHHHHH-HHhcccccccccceeccCccCCCChhhcc--cC-----CCcc
Confidence 1222100355554444433221 22332 222222111 1233444332 22 3344
Q ss_pred EEEEecccCccccccCH-HHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 236 LGSFSACSNVTGIYSDT-RSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl-~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
.|.+|+..+.+|+-.+. ..+.. +.++++|.+..+...++|+.. +|++.++.+|.+| |.|.++++++++
T Consensus 147 yv~~~~NeTi~Gv~v~~~p~~~~-----~~~~v~D~SS~ilsr~iDvsk-----~dviyagaQKnlG-paGltvvIvr~~ 215 (365)
T COG1932 147 YVHFCWNETISGVEVPELPDIGS-----DGLLVADASSAILSRPIDVSK-----YDVIYAGAQKNLG-PAGLTVVIVRPD 215 (365)
T ss_pred EEEEecCCcccceEccCCCCCCC-----CceEEEecccHHhcCCCChhH-----cceEEEehhhccC-ccceEEEEEcHH
Confidence 58899988999998762 22221 288999999999999999975 5999999999998 878999999999
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAF-WVKEYIGHEVIKKQEETYIERALE 393 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~-~~~~~~g~~~i~~~~~~l~~~~~~ 393 (609)
+ +.+...... +....|...........||++.......+.| |++...|.+.+.++.++.++.+.+
T Consensus 216 ~--l~r~~~~~~------------P~if~y~~~~~~~s~yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~ 281 (365)
T COG1932 216 L--LERAESYTL------------PSIFDYLTHADNGSMYNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYD 281 (365)
T ss_pred H--HhcccccCC------------chHhhchhhhccCCccCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 9 555533310 1112233333444556788887765444443 466788999999999999999999
Q ss_pred HhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcC
Q 038499 394 RLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 394 ~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~ 473 (609)
.+.+.+-+.-+-.....+.-+++|.+.. .. ++..++.+.. + .|...-.| |+.
T Consensus 282 ~id~s~fy~~~v~~~~RS~mnV~f~~~~-~~---------------ld~~fv~eae-~-~gl~~lkG--------hr~-- 333 (365)
T COG1932 282 WIDKSDFYRNLVAKANRSRMNVTFTLVD-AE---------------LDKGFVAEAE-A-AGLIYLKG--------HRS-- 333 (365)
T ss_pred HHHhCCccccccchhhccceeEEEEcCc-HH---------------HHHHHHHHHH-H-cCCceecc--------ccC--
Confidence 9988754443333233445677777765 32 4444554444 3 35544322 322
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+|.+|+|+...+..++++.+++.|++..+.
T Consensus 334 ---------------------vgGmRasiynA~~~e~veaL~~fm~~f~~~ 363 (365)
T COG1932 334 ---------------------VGGLRASIYNAVPLEDVEALTDFMDWFEET 363 (365)
T ss_pred ---------------------CCceeeeeecCCCHHHHHHHHHHHHHHHHh
Confidence 456999999999999999999999987654
|
|
| >PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.5e-14 Score=151.54 Aligned_cols=344 Identities=15% Similarity=0.135 Sum_probs=196.6
Q ss_pred CCCccccCCCCCCceEEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+++.++.+..|+ .|+|..+ .|-..+.|.+++.+++...... ... .......++.+.++++.+.
T Consensus 28 ~~G~~~~d~dG~---~~lD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~-~~~------~~~~~~~~la~~l~~~~~~- 96 (406)
T PRK12381 28 GEGSRLWDQQGK---EYIDFAGGIAVNALGHAHPALREALNEQASKFWHT-GNG------YTNEPVLRLAKKLIDATFA- 96 (406)
T ss_pred eecCEEEeCCCC---EEEEcCcCHhhccCCCCCHHHHHHHHHHHhhcccc-cCc------cCCHHHHHHHHHHHhhCCC-
Confidence 455666666664 3888765 4666789999999988653211 111 1123456788888888754
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEE-CCCCccchHHHHHHcCce------------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFV-GPHEHHSNLLSWRQSLAE------------ 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~~~~~~G~~------------ 204 (609)
+.++|+.||+++....+-.+.... .....++.. .|+. ....|......+...+..
T Consensus 97 --~~v~~~~sGseA~e~Alk~ar~~~---------~~~~~~~r~-~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~ 164 (406)
T PRK12381 97 --DRVFFCNSGAEANEAALKLARKYA---------HDRYGSHKS-GIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPD 164 (406)
T ss_pred --CeEEEcCCcHHHHHHHHHHHHHHH---------hhcCCCCCC-eEEEECCCcCCcchhHHhhcCCcccccCCCCCCCC
Confidence 379999888886333332221100 000112222 4554 444444444344333311
Q ss_pred EEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccc-----cCHHHHHHHHHHhCCeEEEeccccC-Cccc
Q 038499 205 VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY-----SDTRSIARLLHQYGGFACFDFAASG-PYVE 278 (609)
Q Consensus 205 vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~-----~dl~~I~~la~~~g~~vivD~A~~~-~~~~ 278 (609)
+..++. .|+++|++.+. +++.+++++ |.+++|-+ ..+++|.++|++||+++|+|+++.. +...
T Consensus 165 ~~~~~~-----~d~~~l~~~l~-----~~~aaviiE-Pv~~~gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr~G 233 (406)
T PRK12381 165 IRHAAY-----NDLNSASALID-----DQTCAVIVE-PIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTG 233 (406)
T ss_pred eeEeCC-----CCHHHHHHhcc-----CCeeEEEEe-CCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCCCc
Confidence 222222 37899999887 578888886 55666543 2378899999999999999999742 2211
Q ss_pred --ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 279 --IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 279 --id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
....... -..|++ ++.|.+||...+|++++++++ ++.+.+...+ . ...+.
T Consensus 234 ~~~~~~~~~-v~pDi~--t~sK~l~gG~~ig~~~~~~~~--~~~~~~~~~~-~----------------------t~~~~ 285 (406)
T PRK12381 234 ELYAYMHYG-VTPDVL--TTAKALGGGFPIGAMLTTEKC--ASVMTVGTHG-T----------------------TYGGN 285 (406)
T ss_pred chhhhHhhC-CCCCEE--EehhhhhCCCceEEEEEcHHH--HhhcCCCCCC-C----------------------CCCCC
Confidence 0000110 135664 566999755558999999888 4444221110 0 01233
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcce-EEEEeccCCCCCcCCCCCCC
Q 038499 357 PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAI-LSFNIHSSTINSSLGENTKT 434 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~-~~f~~~~~~~~~~~~~~~~~ 434 (609)
|.......+++++. + .+.+.++.+++.+++.+.|+++. ...++.. ....+. +.+.+.. +.
T Consensus 286 pl~~aaa~a~l~~l--~---~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~--vrg~Gl~~~~~l~~-~~---------- 347 (406)
T PRK12381 286 PLASAVAGKVLELI--N---TPEMLNGVKQRHDWFVERLNTINARYGLFSE--IRGLGLLIGCVLNA-EY---------- 347 (406)
T ss_pred HHHHHHHHHHHHHH--h---hccHHHHHHHHHHHHHHHHHHHHhhCCCEEE--EecCeEEEEEEecC-ch----------
Confidence 33333344445443 1 23456677777778877776541 1111111 011133 3333222 10
Q ss_pred CCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHH
Q 038499 435 ETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFT 514 (609)
Q Consensus 435 ~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~l 514 (609)
.-....+.+.|.+ .||.+.+. .++.+|+++++.+|++|++++
T Consensus 348 ----~~~~~~~~~~l~~-~Gv~v~~~---------------------------------g~~~lRl~p~~~~t~~~i~~~ 389 (406)
T PRK12381 348 ----AGKAKQISQEAAK-AGVMVLIA---------------------------------GPNVVRFAPALNISEEEITTG 389 (406)
T ss_pred ----hhHHHHHHHHHHH-CCcEEeeC---------------------------------CCCEEEEeCCccCCHHHHHHH
Confidence 0024567777765 59988621 136899999998999999999
Q ss_pred HHHHHHHHHhc
Q 038499 515 LEALEFIAIYG 525 (609)
Q Consensus 515 l~al~~v~~~~ 525 (609)
+++|++++...
T Consensus 390 ~~~l~~~l~~~ 400 (406)
T PRK12381 390 LDRFARACERF 400 (406)
T ss_pred HHHHHHHHHHH
Confidence 99999988653
|
|
| >PRK03715 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.6e-13 Score=145.43 Aligned_cols=343 Identities=15% Similarity=0.124 Sum_probs=196.0
Q ss_pred CCCccccCCCCCCceEEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..+ .|-..+.|.+++.+++.... ..... ...+...++.+.+.+..+.
T Consensus 25 ~~G~~~~d~dG~---~~lD~~sg~~~~~lGh~~p~v~~a~~~q~~~~~-~~~~~------~~~~~~~~la~~l~~~~~~- 93 (395)
T PRK03715 25 GKGSWLYDHNGK---RYLDFIQGWAVNCLGHCNPGMVEALAAQAEKLI-NPSPA------FYNEPMAKLAGLLTQHSCF- 93 (395)
T ss_pred eecCEEEECCCC---EEEECCcChhhccCCCCCHHHHHHHHHHHHhcc-ccccc------ccCHHHHHHHHHHhhccCC-
Confidence 445566556664 4888764 35667889999988876432 11110 1123344455555544322
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEE---EEecCCC-
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVV---EIGLDDD- 213 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv---~v~~~~~- 213 (609)
+.++|+.||+.+.... +++... . ....+++...+|......|.+....+...+.... ..|....
T Consensus 94 --~~v~f~~SGseA~e~A-ik~ar~-~--------~~~~~~~r~~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~~~~~~~ 161 (395)
T PRK03715 94 --DKVFFANSGAEANEGA-IKLARK-W--------GRKHKNGAYEIITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGF 161 (395)
T ss_pred --CEEEEeCCcHHHHHHH-HHHHHH-H--------hhccCCCCcEEEEECCCcCCChHHHHhhcCCcccccCCCCCCCCc
Confidence 3789998888863333 332210 0 0001223222455555566665555554443211 1111110
Q ss_pred ---CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCC-cccc--cCCC
Q 038499 214 ---GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP-YVEI--DVRS 283 (609)
Q Consensus 214 ---g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~-~~~i--d~~~ 283 (609)
...|+++|++.+. +++.+++++.+++..|.+.| +++|.++|++||+++|+|+++++- ...- -...
T Consensus 162 ~~~~~~d~~~l~~~l~-----~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~GRtG~~~a~~~ 236 (395)
T PRK03715 162 PKAELNDIASVEKLIT-----DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLFAYEL 236 (395)
T ss_pred eeeCCchHHHHHHHcC-----CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCcchhhHhh
Confidence 1247899999886 57889999999999999987 999999999999999999998731 1110 0011
Q ss_pred CCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH
Q 038499 284 GQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI 363 (609)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~ 363 (609)
.. -.+|+++++ |.+||...+|.+++++++ . ...+...+ ++ ..|.|...+..
T Consensus 237 ~g-v~PDi~t~g--K~lg~G~p~~av~~~~~i--~-~~~~~~~~-~T----------------------~~g~pl~~aaa 287 (395)
T PRK03715 237 SG-IEPDIMTLG--KGIGGGVPLAALLAKAEV--A-VFEAGDQG-GT----------------------YNGNPLMTAVG 287 (395)
T ss_pred cC-CCCceeeeh--hhhhCCcceEEEEEcccc--c-cccCCCcC-CC----------------------CCCCHHHHHHH
Confidence 11 145887665 999875557888888887 2 11111000 00 12344444444
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC---CceE-EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCC
Q 038499 364 RAALAFWVKEYIGHEVIKKQEETYIERALERLLPN---QNIK-ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP 439 (609)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~---p~i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
.++++.+ + .+.+.++.+++.+++.+.|+++ .++. +-+ ...++.+.+.. .
T Consensus 288 la~L~~l--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vrG-----~Glm~~i~l~~-~---------------- 340 (395)
T PRK03715 288 VAVISQL--L---APGFLEGVRARGEYLKEKLLELSEERGLEGERG-----EGLLRALLLGK-D---------------- 340 (395)
T ss_pred HHHHHHH--H---hccHHHHHHHHHHHHHHHHHHHhhcCCcCeEEc-----ceeEEEEEecC-c----------------
Confidence 4555544 2 2345566677777777766542 1222 211 23444444433 1
Q ss_pred CChHHHHHHHhhh--cCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 038499 440 LHGPFVATLLNDL--FGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEA 517 (609)
Q Consensus 440 l~~~~v~~~L~~~--~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~a 517 (609)
....+.+.+.++ .||.+.+. .+..+|++++..+|++|++.++++
T Consensus 341 -~~~~~~~~~~~~~~~Gi~~~~~---------------------------------~~~~lR~~p~l~~t~~ei~~~~~~ 386 (395)
T PRK03715 341 -IGPQIVEKARDMQPDGLLLNAP---------------------------------RPNLLRFMPALNVTTEEIDQMIAM 386 (395)
T ss_pred -hHHHHHHHHHhccCCCEEEeec---------------------------------CCCEEEEeCCcccCHHHHHHHHHH
Confidence 123444444321 28876521 136799999999999999999999
Q ss_pred HHHHHHh
Q 038499 518 LEFIAIY 524 (609)
Q Consensus 518 l~~v~~~ 524 (609)
|++++..
T Consensus 387 l~~~l~~ 393 (395)
T PRK03715 387 LRSVLDK 393 (395)
T ss_pred HHHHHHh
Confidence 9998865
|
|
| >PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.1e-14 Score=152.58 Aligned_cols=358 Identities=16% Similarity=0.126 Sum_probs=200.6
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..+. |-..+.|.+++.+++.... .... .....+...++.+.|.+.+...
T Consensus 31 ~~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~-----~~~~~~~~~~la~~l~~~~p~~ 101 (423)
T PRK05964 31 AEGAYLYLADGR---ELIDAISSWWVATHGHNHPYIDQAIREQLDRLD-HVIF-----AGFTHEPAERLAQRLVALTPGG 101 (423)
T ss_pred ccccEEEeCCCC---EEEEcchhHHhccCCCCCHHHHHHHHHHHhhCC-Cccc-----cccCCHHHHHHHHHHHHhCCCC
Confidence 455666666664 48997644 6667899999998886531 1111 0012344556777888887533
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc-C------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS-L------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-G------------~~ 204 (609)
.+ .+.|+.||+.+ +...+++-- ... ...-+++. ..|+.-...||+....+... + ..
T Consensus 102 ~~-~v~f~~sGseA-~e~A~klar-~~~-------~~~~~~~r-~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~ 170 (423)
T PRK05964 102 LD-HVFFSDSGSVA-VEVALKMAL-QYW-------RNRGEPGR-SRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFE 170 (423)
T ss_pred CC-EEEEeCCcHHH-HHHHHHHHH-HHH-------HhcCCCCC-cEEEEEcCCcCCccHHHHhcCCCccccccccCcCCC
Confidence 33 89999888886 333322210 000 00001233 35776666677654433221 1 12
Q ss_pred EEEEecCCC--CCCCHHHHHHHHhhhccCCCceEEEEec-ccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Cc
Q 038499 205 VVEIGLDDD--GLLDIEALRSKLELYKDAKRPILGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PY 276 (609)
Q Consensus 205 vv~v~~~~~--g~ld~e~L~~al~~~~~~~~~~lv~~s~-~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~ 276 (609)
+..++...+ ...++++|++.+.+. .+++..+++.. +++..|...+ +++|.++|++||+++|+|+++.+ +.
T Consensus 171 ~~~~~~~~~d~~~~~~~~l~~~l~~~--~~~iaavi~Ep~i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr 248 (423)
T PRK05964 171 QVTAPFPPDGYEQATLDALEALLEKH--AGEIAAFIVEPLVQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIATGFGR 248 (423)
T ss_pred CEEeCCCcchhHHHHHHHHHHHHHhC--CCcEEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc
Confidence 233333221 112378888888632 14566777776 5788888875 78999999999999999999853 22
Q ss_pred ccc--cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 277 VEI--DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 277 ~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
... -.... .-.+|+++++ |+++|+ ..+|+++.++++ .+.+.+.. .++. ...
T Consensus 249 ~G~~~a~~~~-~v~pDi~~~~--K~l~gG~~p~~av~~~~~i--~~~~~~~~-~~~~--------------------~~~ 302 (423)
T PRK05964 249 TGTLFACEQA-GVSPDIMCLS--KGLTGGYLPLAATLCTAEI--FEAFYSDD-RAKA--------------------FMH 302 (423)
T ss_pred CcchhHHHhc-CCCCCeeeee--hhhhcCcccceEEEEcHHH--HHhhhcCC-cccc--------------------ccc
Confidence 110 00111 0145877665 999876 468999999888 33332110 0000 001
Q ss_pred CCC--hhHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 354 GGT--PQVIQ--MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 354 ~gt--p~i~~--~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
.+| .+.++ ...+++..+ +. +.+.++..++.+++.+.|+++.+...+... .....++.+.+.. ..
T Consensus 303 ~~T~~~np~~~aaa~a~l~~l--~~---~~~~~~~~~~g~~l~~~l~~l~~~~~i~~v-rg~Gl~~~i~l~~-~~----- 370 (423)
T PRK05964 303 SPSYTANPLACAAANASLDLF--ED---EPVLERVAALSAGLAEGLEPFRDLPGVADV-RVLGAIGAVELDR-PV----- 370 (423)
T ss_pred CCCCCcCHHHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHhhccCCCeEEe-ecccEEEEEEecc-Cc-----
Confidence 122 22233 233344433 21 234566667777777766554222111110 0122344454433 10
Q ss_pred CCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHH
Q 038499 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNE 509 (609)
Q Consensus 430 ~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~e 509 (609)
. ......+.+.|.+ .||.+.+. .+.+|+++++.+|++
T Consensus 371 ------~--~~~~~~l~~~l~~-~Gv~v~~~----------------------------------~~~lR~~p~l~~t~e 407 (423)
T PRK05964 371 ------L--ERDGPALRAFALE-RGVLLRPL----------------------------------GNTIYLMPPYIITAE 407 (423)
T ss_pred ------c--hhHHHHHHHHHHH-CCeEEEec----------------------------------CCEEEEeCCcccCHH
Confidence 0 0024567777765 59988621 257999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 038499 510 EFEFTLEALEFIAIY 524 (609)
Q Consensus 510 eid~ll~al~~v~~~ 524 (609)
|+|++++++++++++
T Consensus 408 dId~~v~~l~~al~~ 422 (423)
T PRK05964 408 ELDRITDAIVEVADE 422 (423)
T ss_pred HHHHHHHHHHHHHhh
Confidence 999999999998865
|
|
| >KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=9.7e-15 Score=150.84 Aligned_cols=158 Identities=22% Similarity=0.259 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH---
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR--- 199 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~--- 199 (609)
...+++.++++-|+.. .++|. ||..+ +..++..+ +++|+ .|+.....|......++
T Consensus 79 ~~~le~~iaal~ga~~--~l~fs-SGmaA-~~~al~~L---------------~~~g~--~iV~~~~~Y~gT~~~l~~~~ 137 (409)
T KOG0053|consen 79 RDVLESGIAALEGAAH--ALLFS-SGMAA-ITVALLHL---------------LPAGD--HIVATGDVYGGTLRILRKFL 137 (409)
T ss_pred hHHHHHHHHHHhCCce--EEEec-ccHHH-HHHHHHHh---------------cCCCC--cEEEeCCCcccHHHHHHHHH
Confidence 4567888999999874 35564 88875 44444444 36777 67777777877665544
Q ss_pred -HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc
Q 038499 200 -QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE 278 (609)
Q Consensus 200 -~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~ 278 (609)
..|++...+..+ ++++++++++ +++++|++..|+||+..+.|+++|.++||++|+++|||.+-+.|+.
T Consensus 138 ~~~gie~~~vd~~-----~~~~~~~~i~-----~~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~~- 206 (409)
T KOG0053|consen 138 PKFGGEGDFVDVD-----DLKKILKAIK-----ENTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPYN- 206 (409)
T ss_pred HHhCceeeeechh-----hHHHHHHhhc-----cCceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCcccc-
Confidence 468899888776 7889999998 6899999999999999999999999999999999999999777632
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEe-chh
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMT-KAL 315 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~-~~~ 315 (609)
.+.-++ |+|+++-|..||++|-.- .|.++.+ .++
T Consensus 207 ~~pL~l---GADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~ 243 (409)
T KOG0053|consen 207 QDPLPL---GADIVVHSATKYIGGHSDVIGGSVVLNSEEL 243 (409)
T ss_pred cChhhc---CCCEEEEeeeeeecCCcceeeeEEecCcHHH
Confidence 222233 799999999999998754 5788886 444
|
|
| >PLN00144 acetylornithine transaminase | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-13 Score=145.37 Aligned_cols=343 Identities=17% Similarity=0.123 Sum_probs=193.2
Q ss_pred CCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCC
Q 038499 65 KNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQ 138 (609)
Q Consensus 65 ~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~ 138 (609)
.+.++.+..|+ -|+|..++ |-..+.|.+++.+++.... .... . ..+....++.+.+.+..+.
T Consensus 5 ~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~--~----~~~~~~~~la~~l~~~~~~-- 72 (382)
T PLN00144 5 KGCKLYDVEGK---EYLDMAAGIAVNALGHGDPDWVKAVAEQAGTLA-HVSN--V----YHTIPQVELAKRLVASSFA-- 72 (382)
T ss_pred eccEEEeCCCC---EEEECCcCHHhccCCCCCHHHHHHHHHHHHhcC-Cccc--c----ccCHHHHHHHHHHHhcCCC--
Confidence 44556666664 38887543 5567899999999887531 1111 0 1123345566667666542
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC-C----ceEEEECCCCccchH-HHHHHcCc---------
Q 038499 139 EDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE-E----RWVVFVGPHEHHSNL-LSWRQSLA--------- 203 (609)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d----~~~Vlv~~~~h~s~~-~~~~~~G~--------- 203 (609)
+.|.|+.|||++.-..+-.+..... +. ....+ + ++.|+.-...||+.. .++...+-
T Consensus 73 -~~v~f~~sGseA~e~AlklAr~~~~----~~----~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~ 143 (382)
T PLN00144 73 -DRVFFCNSGTEANEAAIKFARKYQR----VR----APDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEP 143 (382)
T ss_pred -CeEEEeCCcHHHHHHHHHHHHHHHh----cc----CCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCC
Confidence 3899998998863222211111000 00 00001 0 234665555555543 33322111
Q ss_pred ---eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCC-
Q 038499 204 ---EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP- 275 (609)
Q Consensus 204 ---~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~- 275 (609)
.+..++.+ |+++|++.+.. +++.++++...+|+.|...+ +++|.++|++||+++|+|++++..
T Consensus 144 ~~~~~~~~~~~-----d~~~l~~~~~~----~~~aavi~eP~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg~g 214 (382)
T PLN00144 144 LMPGVTFVEYG-----NLEAARKLIQK----GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLG 214 (382)
T ss_pred CCCCeEEeCCC-----CHHHHHHhcCC----CCeEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCC
Confidence 12333322 78999988863 46788888888999666543 678999999999999999997642
Q ss_pred ccc--c--cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccc
Q 038499 276 YVE--I--DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEER 351 (609)
Q Consensus 276 ~~~--i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r 351 (609)
... . +.... ..|++ ++.|.+++...+|++++++++ .+.+.+...+.
T Consensus 215 r~g~~~~~~~~~~---~PDi~--t~sK~l~~G~pig~v~~~~~~--~~~~~~~~~~~----------------------- 264 (382)
T PLN00144 215 RTGYLWAHEAYGV---EPDIM--TLAKPLAGGLPIGAVLVTEKV--ASAINPGDHGS----------------------- 264 (382)
T ss_pred ccchHhhhhhcCC---CCCEE--EecccccCCcceEEEEEcHHH--HhccCCCCCCC-----------------------
Confidence 221 1 11111 35744 456999866668999999888 34443211100
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce-EEeCCCCCCCcceEEEEeccCCCCCcCCC
Q 038499 352 ESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI-KILGNTSTKRQAILSFNIHSSTINSSLGE 430 (609)
Q Consensus 352 ~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i-~v~~~~~~~r~~~~~f~~~~~~~~~~~~~ 430 (609)
...+.|-......+.+.+.. +..-.+.+.+..+.+.+.+.+.+.+.|.+ .+.+ .+.+.+....
T Consensus 265 T~~~~pl~~aaa~a~l~~i~-~~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vrg------~G~~~~l~l~--------- 328 (382)
T PLN00144 265 TFAGGPLVCNAALAVLDKIS-KPGFLASVAKKGEYLRELLRRKLGGNPHVKEVRG------VGLLVGIQLD--------- 328 (382)
T ss_pred CCCCCHHHHHHHHHHHHHHh-hchHHHHHHHHHHHHHHHHHHHHhhCCCceeeec------CceEEEEEec---------
Confidence 01233333333444555542 11112333333333444444444444432 2222 2333333223
Q ss_pred CCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHH
Q 038499 431 NTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEE 510 (609)
Q Consensus 431 ~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ee 510 (609)
.....+...+.+ .||.+.++. ....+|++++...+++|
T Consensus 329 ---------~~~~~~~~~~~~-~Gv~i~~~~--------------------------------~~~~lrl~p~~~~~~~~ 366 (382)
T PLN00144 329 ---------VPAGPLVDACRD-SGLLVLTAG--------------------------------KGDVVRLVPPLVISEAE 366 (382)
T ss_pred ---------CccHHHHHHHHH-CCeEEeecC--------------------------------CCCEEEEeCCCccCHHH
Confidence 134567777765 599987531 12689999998889999
Q ss_pred HHHHHHHHHHHHHhc
Q 038499 511 FEFTLEALEFIAIYG 525 (609)
Q Consensus 511 id~ll~al~~v~~~~ 525 (609)
++.++++|++++...
T Consensus 367 i~~~~~~l~~~l~~~ 381 (382)
T PLN00144 367 LEQAVEILADCLPAL 381 (382)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988653
|
|
| >KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.2e-13 Score=142.50 Aligned_cols=282 Identities=18% Similarity=0.118 Sum_probs=195.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcE-EEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH
Q 038499 118 HTTNMVHEASNYIKKCLGGGQEDAM-IFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196 (609)
Q Consensus 118 ~~~~~~~e~r~~ia~~~g~~~~~~v-ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (609)
....+..++-.+++.+++++++ .+ .-| +|.++++.+.... ++.+.... ++-++|.++++...|.+...
T Consensus 117 ~~~~~e~~~Vnm~~~L~~~~~~-~~g~~t-~G~Ses~l~~~k~--------~~~~r~~~-k~I~~p~iv~~~~v~~a~eK 185 (491)
T KOG1383|consen 117 VVRKLEAECVNMIANLFNAPSD-SCGCGT-VGGSESGLAAKKS--------YRNRRKAQ-KGIDKPNIVTPQNVHAAFEK 185 (491)
T ss_pred hhHHHHHHHHHHHHHHhcCCcc-ccCccc-cccchHHHHHHHH--------HHHHHHhc-cCCCCccccchHHHHHHHHH
Confidence 4678888999999999999865 22 222 3444443322222 23332222 34456789999988888888
Q ss_pred HHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHH-hCCeEEEeccccC
Q 038499 197 SWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFDFAASG 274 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~-~g~~vivD~A~~~ 274 (609)
..+..+.+++.|++++ +..+|+..+.+.++ .+|++++.+.++.|+|.+.|+++|.+++-+ +++.+++|++.+.
T Consensus 186 ~a~yf~v~l~~V~~~~~~~~~D~~k~~~~i~-----eNti~lv~~~~~~p~G~~e~ve~l~~l~~e~w~ipiHvDa~~Gg 260 (491)
T KOG1383|consen 186 AARYFEVELREVPLDEGDYRVDPGKVVRMID-----ENTIMLVGSLPNFPTGEIEDVEKLADLLLEIWDIPIHVDACLGG 260 (491)
T ss_pred HHhhEEEEEEeeeccccceEecHHHHHHHhc-----cceEEEEEEcCCCCccchhhHHHHHHHHHHHhCCceeecccCcc
Confidence 8888999999999995 78999999999999 689999999999999999999999999998 9999999998665
Q ss_pred Cccc--------ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCC--CCCCccCCCceEeecccccccccc
Q 038499 275 PYVE--------IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGS--FPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 275 ~~~~--------id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~--~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
...+ +|++. .++..+..+.||+-..|.|+|+++-+.+-.+-.+ ....+.||-+..+.
T Consensus 261 Fi~p~~~~~~~~fdFr~---p~V~Sisa~~HKYGl~~~G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~T---------- 327 (491)
T KOG1383|consen 261 FINPAGYLNEEEFDFRV---PGVTSISADGHKYGLAPAGSSWVLYRNKELLPHQLFFHTDWLGGIYASPT---------- 327 (491)
T ss_pred ccccccccCccccccCC---CCceeEeeccceeeeeecCcEEEEEcccccccceEEEeccccCccccCcc----------
Confidence 4442 23322 4778899999999888999898877654411111 12233444331111
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCC
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~ 424 (609)
-...++|. .+++. .+++.- ....|+.+..+++.+.+.++++.+++++++.+++. |.++|.... ..
T Consensus 328 ----lngSR~g~-~va~~-wa~~~~--lG~eGY~~~~~~ive~~~~l~egie~i~~i~i~gk------p~vs~~~~~-s~ 392 (491)
T KOG1383|consen 328 ----LNGSRPGS-QVAAQ-WAALMS--LGEEGYRENTQNIVETARKLREGIENIKGIKIVGK------PLVSFILFG-SN 392 (491)
T ss_pred ----cccCCccc-HHHHH-HHHHHH--hhHHHHHHHHHHHHHHHHHHHHhhhccccceecCC------CcEEEEEcc-CC
Confidence 11122222 22222 222221 24567888888999999999999999999999987 667777766 21
Q ss_pred CCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEec
Q 038499 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQAR 458 (609)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~ 458 (609)
.++--++...|. .+|..+.
T Consensus 393 --------------~~~i~elsd~l~-~~GW~ln 411 (491)
T KOG1383|consen 393 --------------DVNIFELSDLLR-KKGWILN 411 (491)
T ss_pred --------------ccchhhhhHHHH-hcCcCcc
Confidence 144556777774 4688776
|
|
| >PRK13578 ornithine decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-13 Score=151.30 Aligned_cols=328 Identities=15% Similarity=0.099 Sum_probs=201.9
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-HH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-WR 199 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~ 199 (609)
....++++..|+.+|++. ..|+-||||.++..++.++ +++|| .|+++...|-|+... +.
T Consensus 174 G~i~eAq~~AA~~fgAd~---tyFlvNGTS~gn~a~i~a~---------------~~~Gd--~VLvdRN~HKSv~hgaLi 233 (720)
T PRK13578 174 GAAKDAQKHAAKVFNADK---TYFVLNGTSASNKVVTNAL---------------LTPGD--LVLFDRNNHKSNHHGALI 233 (720)
T ss_pred hHHHHHHHHHHHHhCCCc---eEEEeCChhHHHHHHHHHh---------------cCCCC--EEEeecccHHHHHHHHHH
Confidence 458899999999999974 3454599999988887776 48999 799999999999985 88
Q ss_pred HcCceEEEEecCC--C---CCCCHHH-----HHHHHhhhcc----CCC-ceEEEEecccCccccccCHHHHHHH-HHHhC
Q 038499 200 QSLAEVVEIGLDD--D---GLLDIEA-----LRSKLELYKD----AKR-PILGSFSACSNVTGIYSDTRSIARL-LHQYG 263 (609)
Q Consensus 200 ~~G~~vv~v~~~~--~---g~ld~e~-----L~~al~~~~~----~~~-~~lv~~s~~sn~TG~~~dl~~I~~l-a~~~g 263 (609)
..|+.++++.... . |.++.+. ++++|.++.. ..+ .++++++++ |..|++.|++.|+++ +|.++
T Consensus 234 LsGa~PVYl~P~~n~~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~p-TYdG~~ydi~~I~~~~~h~~~ 312 (720)
T PRK13578 234 QAGATPVYLETARNPFGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLG-TYDGTIYNARQVVDKIGHLCD 312 (720)
T ss_pred HcCCeEEEeeccccccCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECC-CCcceeecHHHHHHHhhccCC
Confidence 9999999997543 2 3456544 8999876410 113 478888876 567999999999998 68888
Q ss_pred CeEEEeccccCCccccc----CCCC-CCCCcc----EEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEee
Q 038499 264 GFACFDFAASGPYVEID----VRSG-QTDGYD----AIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYV 334 (609)
Q Consensus 264 ~~vivD~A~~~~~~~id----~~~~-~~~~~D----~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~ 334 (609)
.++||+||++-....+ +.+. ...|+| +++-|.||.+++....++|.++... ++..+ .++
T Consensus 313 -~llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~--i~g~~---------~~v 380 (720)
T PRK13578 313 -YILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNH--IKGQA---------RYC 380 (720)
T ss_pred -cEEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcc--ccccc---------ccC
Confidence 9999999875221111 1111 123678 9999999999987777888887655 22100 000
Q ss_pred cccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh-CCCCceEEeCCCCCCC
Q 038499 335 NGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEETYIERALERL-LPNQNIKILGNTSTKR 411 (609)
Q Consensus 335 ~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L-~~~p~i~v~~~~~~~r 411 (609)
++......-......+|+.+-+ +-.+..+. ....|.+ +.+...+++..+++.+ +.+++++++.+.....
T Consensus 381 ------~~~r~~~al~m~qSTSPsY~LmASLDva~~~m-~~~~G~~-l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~ 452 (720)
T PRK13578 381 ------PHKRLNNAFMLHASTSPFYPLFAALDVNAKMH-EGESGRR-LWMECVKLGIEARKLILARCKLIRPFIPPVVDG 452 (720)
T ss_pred ------CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH-HHhhCHH-HHHHHHHHHHHHHHHHHHhCCCeeecccccccc
Confidence 0000111011223344544332 22222222 1223444 4455666777788877 7778888885421100
Q ss_pred ------------cceEEEEeccCCCCCc-----------CC-----CCCCC---CC----CCCCChHHHHHHHhhhcCcE
Q 038499 412 ------------QAILSFNIHSSTINSS-----------LG-----ENTKT---ET----DKPLHGPFVATLLNDLFGIQ 456 (609)
Q Consensus 412 ------------~~~~~f~~~~~~~~~~-----------~~-----~~~~~---~~----~~~l~~~~v~~~L~~~~GI~ 456 (609)
.-.-+|.+.+ +..+. .+ -.+.+ .. ..++.+..+.+.|.+. ||+
T Consensus 453 ~~~~~~~~~~~~~~~~~w~~~p-~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~-gI~ 530 (720)
T PRK13578 453 KPWQDYPTEQIASDLRFFSFEP-GEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLREN-GIV 530 (720)
T ss_pred cccccCchhhhccccccccccc-CccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHc-CCE
Confidence 0000111111 10000 00 00011 11 2245578888988665 998
Q ss_pred eccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 457 ARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 457 v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+.- |. ...+-+-++...|++++++++++|.++.+.
T Consensus 531 ~E~---~d------------------------------~~~vL~l~s~g~t~~~~~~Lv~aL~~f~~~ 565 (720)
T PRK13578 531 PEK---CD------------------------------LNSILFLLTPAEDMAKLQQLVAMLARFEKH 565 (720)
T ss_pred EEe---cC------------------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 761 11 244555556668999999999999988664
|
|
| >TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.6e-13 Score=141.93 Aligned_cols=348 Identities=17% Similarity=0.143 Sum_probs=195.2
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|++ |+|..++ |-..+.|.+++.+++... ...+.. ....+...++.+++.+.+..+
T Consensus 24 ~~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~-~~~~~~-----~~~~~~~~~lae~l~~~~~~~ 94 (412)
T TIGR02407 24 AKGSTLWDEDGKE---YIDFFAGAGALNYGHNNPKLKQALIDYLADD-GIIHSL-----DMATEAKREFLETFNEIILKP 94 (412)
T ss_pred cccCEEEeCCCCE---EEEcccchhhccCCCCCHHHHHHHHHHHhhc-cceecc-----ccCcHHHHHHHHHHHHhccCc
Confidence 4556677777753 9998654 667899999999988642 111111 012344556667777764222
Q ss_pred --CCCcEEEe-CChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcC-----------
Q 038499 138 --QEDAMIFC-GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSL----------- 202 (609)
Q Consensus 138 --~~~~vift-~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G----------- 202 (609)
..+.+.|+ .||+.+ +...+++-- .. .| |+.|+.-...||+... +....+
T Consensus 95 ~~~~~~~~f~~~sGseA-~e~AlklAr-------------~~-tg-r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~ 158 (412)
T TIGR02407 95 RGLDYKVQFPGPTGTNA-VESALKLAR-------------KV-TG-RSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVP 158 (412)
T ss_pred cCCCceEEEeCCCchHH-HHHHHHHHh-------------hh-cC-CCeEEEECCCcCCchHHHHHhcCCcccccCCCCC
Confidence 11246664 578875 333333211 01 23 2256665555555432 222211
Q ss_pred -ceEEEEecCCCC---CCCHHHHHHHHhhhccC-CCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc
Q 038499 203 -AEVVEIGLDDDG---LLDIEALRSKLELYKDA-KRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 203 -~~vv~v~~~~~g---~ld~e~L~~al~~~~~~-~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~ 273 (609)
..++.+|.+... .-+++.+++.+.++... +++..+++..+.+..|.+.+ +++|.++|++||+++|+|++++
T Consensus 159 ~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t 238 (412)
T TIGR02407 159 LSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQA 238 (412)
T ss_pred CCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh
Confidence 133444432210 12467788888642111 25678889999999998644 7789999999999999999976
Q ss_pred C-Ccc----cccCCCCCCCCccEEEEcCCCCCCC-CCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 274 G-PYV----EIDVRSGQTDGYDAIFLSTHKFLGG-PGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 274 ~-~~~----~id~~~~~~~~~D~v~~S~hK~lgg-p~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
+ |.. ..+.... ..|+++++ |++|+ ...+|++++++++ ..+.+...+ ++
T Consensus 239 G~GRtG~~~a~~~~~v---~PDi~~~~--K~lg~~G~pigav~~~~~~---~~~~~~~~~-~T----------------- 292 (412)
T TIGR02407 239 GCGRTGTFFSFEPAGI---EPDIVCLS--KSISGYGLPLALTLIKPEL---DVWKPGEHN-GT----------------- 292 (412)
T ss_pred CCCccchhHHhcccCC---CCCEEEec--hhccCCccceeEEEEchhh---hccCCCccC-CC-----------------
Confidence 2 211 1111111 45887765 99985 4458999998875 122211110 00
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC----CCCceEEeCCCCCCCcceEEEEeccCC
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL----PNQNIKILGNTSTKRQAILSFNIHSST 423 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~----~~p~i~v~~~~~~~r~~~~~f~~~~~~ 423 (609)
..|.|.......+.++.++. .+.+.++.+++.+++.++|+ .++++.. .. .....++++.+.+ .
T Consensus 293 -----~~gnpl~~aaa~a~l~~~i~----~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~-~v--rg~Gl~~~l~l~~-~ 359 (412)
T TIGR02407 293 -----FRGNNLAFVTATAALEYYWS----DDAFEKAVQRKSEIIQERLDRIVAEYPELIK-QV--RGRGLMQGIECGD-G 359 (412)
T ss_pred -----CCccHHHHHHHHHHHHHHhc----ccHHHHHHHHHHHHHHHHHHHHHhhCCCceE-ee--ecceeEEEEEecC-h
Confidence 02333333333455553222 23445555556666655554 3443211 11 0122333444433 1
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP 503 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~ 503 (609)
.....+.+.+.+ .||.+.+.. + .++.+|++++
T Consensus 360 ----------------~~~~~~~~~~~~-~Gv~v~~~~----~---------------------------~~~~lr~~p~ 391 (412)
T TIGR02407 360 ----------------DLAGKIAKAAFE-NGLIIETSG----P---------------------------NDEVIKLLPP 391 (412)
T ss_pred ----------------HHHHHHHHHHHH-CCCEEeccC----C---------------------------CCCEEEEECC
Confidence 124567777765 599886310 1 1367999999
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q 038499 504 YYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 504 ~~~t~eeid~ll~al~~v~~ 523 (609)
..+|++|+++++++|+++++
T Consensus 392 l~~t~~~i~~~~~~l~~~l~ 411 (412)
T TIGR02407 392 LTIDEETLQQGLDILEQAVE 411 (412)
T ss_pred CCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999999875
|
Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance. |
| >PRK15400 lysine decarboxylase CadA; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.3e-13 Score=151.86 Aligned_cols=318 Identities=15% Similarity=0.091 Sum_probs=202.6
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR 199 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (609)
+....++++.+|+.+|++. ..|+-||||.++..++.++ +.+|| .|+++...|-|+..++.
T Consensus 194 ~G~i~eAe~~AA~~fgAd~---tyfvvNGTS~~n~av~~a~---------------~~~Gd--~VLvdRN~HKSv~haLi 253 (714)
T PRK15400 194 SGPHKEAEEYIARVFNADR---SYMVTNGTSTANKIVGMYS---------------APAGS--TVLIDRNCHKSLTHLMM 253 (714)
T ss_pred ChHHHHHHHHHHHHhCCCc---EEEEeCchHHHHHHHHHHh---------------cCCCC--EEEeecccHHHHHHHHH
Confidence 3457899999999999974 3555599999888877765 48999 79999999999999999
Q ss_pred HcCceEEEEecCC--C---CCCC-----HHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEe
Q 038499 200 QSLAEVVEIGLDD--D---GLLD-----IEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (609)
Q Consensus 200 ~~G~~vv~v~~~~--~---g~ld-----~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD 269 (609)
..|+.++++.... . |.++ .+.++++|.++....+|+.++++++ |..|++.|++.|+++||.++ ++||
T Consensus 254 lsga~PVYl~P~rn~~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~p-TYdG~~yd~~~I~~~~~~~~--ilvD 330 (714)
T PRK15400 254 MSDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFD 330 (714)
T ss_pred HcCCeEEEecccccccCCccCCCccccCHHHHHHHHHhCccccCccEEEEECC-CCccEecCHHHHHHHhCCCC--EEEE
Confidence 9999999997543 2 2445 8999999986533334557777776 67899999999999999887 6899
Q ss_pred ccccCCcc--c-c-cCCCCCCCCc---c--EEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccc
Q 038499 270 FAASGPYV--E-I-DVRSGQTDGY---D--AIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEK 340 (609)
Q Consensus 270 ~A~~~~~~--~-i-d~~~~~~~~~---D--~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (609)
+||++-.. + . +..++. .+. | +++-|.||.+++..-.++|.++..+ +
T Consensus 331 EAwgah~~F~p~~~~~sam~-~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~v---d--------------------- 385 (714)
T PRK15400 331 SAWVPYTNFSPIYEGKCGMS-GGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDV---N--------------------- 385 (714)
T ss_pred ccchhhhccCcccCCcChhh-cCCCCCCceEEEEchhhcccchhHHhHHHHcCCC---C---------------------
Confidence 99875211 1 1 112221 233 5 8999999999987666666554322 0
Q ss_pred cccccccccccccCCChhH--HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc------eEEeCCCCCCCc
Q 038499 341 DTLYLEDIEERESGGTPQV--IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN------IKILGNTSTKRQ 412 (609)
Q Consensus 341 ~~~~~~~~~~r~~~gtp~i--~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~------i~v~~~~~~~r~ 412 (609)
+......-......+|+. ++.+-.+.+++ ....| +.+.+...+++..+++.+.++++ ++++.+......
T Consensus 386 -~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m-~~~~G-~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~ 462 (714)
T PRK15400 386 -EETFNEAYMMHTTTSPHYGIVASTETAAAMM-KGNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTT 462 (714)
T ss_pred -HHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-Hhhhh-HHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccc
Confidence 000000011122334543 33333333332 11234 44555666777888888887777 777754311000
Q ss_pred ceEEEEeccCCCCCcC---------CCC-------CC--CC----CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhh
Q 038499 413 AILSFNIHSSTINSSL---------GEN-------TK--TE----TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470 (609)
Q Consensus 413 ~~~~f~~~~~~~~~~~---------~~~-------~~--~~----~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ 470 (609)
. +|...+ +..+.+ .-+ +. +. .+.++.+..+.+.| +++||.+.- |
T Consensus 463 ~--~w~~~p-~~~whgf~~~~~~~~~lDP~Klti~tpgi~~~g~~~~~Gipg~~v~~~L-~e~gI~~E~---~------- 528 (714)
T PRK15400 463 E--CWPLRS-DSTWHGFKNIDNEHMYLDPIKVTLLTPGMKKDGTMSDFGIPASIVAKYL-DEHGIVVEK---T------- 528 (714)
T ss_pred h--hcccCc-cccccCcccccccccccCCceEEEEeCCCCCCccccccCCCHHHHHHHH-HHcCCEEEe---c-------
Confidence 0 122111 111100 000 10 11 12467788899998 557998861 1
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
....+=+-++...|++++++++++|.++.+..
T Consensus 529 -----------------------d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~~~ 560 (714)
T PRK15400 529 -----------------------GPYNLLFLFSIGIDKTKALSLLRALTDFKRAF 560 (714)
T ss_pred -----------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhh
Confidence 13456666777799999999999999886653
|
|
| >PRK15399 lysine decarboxylase LdcC; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.2e-13 Score=147.49 Aligned_cols=316 Identities=15% Similarity=0.102 Sum_probs=201.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
....++++.+|+.+|++. ..|+-||||.++..++.++ +++|| .|+++...|-|+..++..
T Consensus 195 G~i~eAe~~aA~~fgAd~---tyfvvNGTS~~n~av~~a~---------------~~~Gd--~VLvdRN~HKSv~~aLil 254 (713)
T PRK15399 195 GPHLEAEEYIARTFGAEQ---SYIVTNGTSTSNKIVGMYA---------------APAGS--TLLIDRNCHKSLAHLLMM 254 (713)
T ss_pred hHHHHHHHHHHHHhCCCc---EEEEeCChHHHHHHHHHHh---------------cCCCC--EEEeecccHHHHHHHHHH
Confidence 457889999999999974 3454589999888887765 48999 799999999999999999
Q ss_pred cCceEEEEecCC--C---CCCCH-----HHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeE-EEe
Q 038499 201 SLAEVVEIGLDD--D---GLLDI-----EALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFA-CFD 269 (609)
Q Consensus 201 ~G~~vv~v~~~~--~---g~ld~-----e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~v-ivD 269 (609)
.|+.++++.... . |.++. +.++++|.++....+|+.++++++ +..|++.|++.|+++| |+.+ +||
T Consensus 255 sga~PVYl~P~~n~~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~p-TYdGi~yd~~~I~~~~---g~~~ilvD 330 (713)
T PRK15399 255 SDVVPIWLKPTRNALGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNS-TYDGLLYNTDWIKQTL---DVPSIHFD 330 (713)
T ss_pred cCCeeEEecccccccCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECC-CCCceeeCHHHHHHHh---CCCEEEEe
Confidence 999999997543 2 34555 999999987543345678888877 6789999999999999 6766 699
Q ss_pred ccccCCc--cc--ccCCCCCC-CCccEE---EEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccc
Q 038499 270 FAASGPY--VE--IDVRSGQT-DGYDAI---FLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKD 341 (609)
Q Consensus 270 ~A~~~~~--~~--id~~~~~~-~~~D~v---~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~ 341 (609)
+||++-. .+ .+..++.. .+.|.+ +-|.||.+++....++|.++..+ ..+++
T Consensus 331 EAhgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~v-d~~~~-------------------- 389 (713)
T PRK15399 331 SAWVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEY-DEETF-------------------- 389 (713)
T ss_pred ccchhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccccchheeeeecCCC-CHHHH--------------------
Confidence 9987521 12 11122211 145766 88999999988777888876532 00000
Q ss_pred ccccccccccccCCChhHH--HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc------eEEeCCCCCCCcc
Q 038499 342 TLYLEDIEERESGGTPQVI--QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN------IKILGNTSTKRQA 413 (609)
Q Consensus 342 ~~~~~~~~~r~~~gtp~i~--~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~------i~v~~~~~~~r~~ 413 (609)
...-......+|+.. +.+-.+.+++ ....| +.+.++..+++..+++.+.++.+ ++++.+.......
T Consensus 390 ----n~a~~m~~STSPsY~LmASLD~a~~~m-~~~~G-~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~ 463 (713)
T PRK15399 390 ----NEAFMMHTSTSPSYPIVASVETAAAML-RGNPG-KRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAE 463 (713)
T ss_pred ----HHHHHHHcCCCcHHHHHHHHHHHHHHH-Hhhhh-HHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCcc
Confidence 000111223345433 3333333332 11234 34455666677778888877655 5676542111111
Q ss_pred eEEEEeccCCCCCc-----------CC-----CCCCC--C----CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh
Q 038499 414 ILSFNIHSSTINSS-----------LG-----ENTKT--E----TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL 471 (609)
Q Consensus 414 ~~~f~~~~~~~~~~-----------~~-----~~~~~--~----~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l 471 (609)
+|.+.+ +..+. .+ -.+.+ . .+.++++..+.+.| +++||++.- |.
T Consensus 464 --~w~l~p-~~~whgf~~~~~~~~~lDP~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L-~e~gI~~E~---~d------- 529 (713)
T PRK15399 464 --CWPVAP-GEQWHGFKDADADHMFLDPVKVTILTPGMDEQGNMSEEGIPAALVAKFL-DERGIVVEK---TG------- 529 (713)
T ss_pred --ceecCC-CcccccccccccccccCCCceEEEEecCcccccccccCCCCHHHHHHHH-HHcCCEEEe---cC-------
Confidence 122211 11100 00 00111 1 13367888999998 456998861 11
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
...+=+-++...|++++++++++|.++.+.
T Consensus 530 -----------------------~~~vL~l~s~g~t~~~~~~L~~aL~~f~~~ 559 (713)
T PRK15399 530 -----------------------PYNLLFLFSIGIDKTKAMGLLRGLTEFKRA 559 (713)
T ss_pred -----------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 245666667778999999999999988654
|
|
| >KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.2e-13 Score=135.58 Aligned_cols=401 Identities=13% Similarity=0.090 Sum_probs=247.5
Q ss_pred CCCCCcchHHHHHHHHHhhcc-CCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHH
Q 038499 43 SVPKSISSSEKKLTWLQSQII-GKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTN 121 (609)
Q Consensus 43 ~~~r~~~~~~~~~~~~r~~~~-g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~ 121 (609)
++|-.++..++.++-+.+-+. |. +....|. |.-|-.++-+-+.++.-|...-....|-+. ......++
T Consensus 45 ~aPe~pE~~~~Il~D~ekiI~PGi-tHw~hP~------fhAyfpa~~s~~siladmLs~~i~~vGFtW----~ssPa~TE 113 (511)
T KOG0628|consen 45 KAPEKPESWEDILGDLEKIIMPGI-THWQHPH------FHAYFPAGNSYPSILADMLSGGIGCVGFTW----ASSPACTE 113 (511)
T ss_pred CCCCChhhHHHHHHHHHHHccCCC-cccCCCc------eeeEccCccchHHHHHHHHhccccccccee----ecCcchHH
Confidence 444445556777777776664 32 3333332 334444444445555545433322112111 12334566
Q ss_pred HHHHHHHHHHHHhCCC---------CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC----------Cce
Q 038499 122 MVHEASNYIKKCLGGG---------QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE----------ERW 182 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~---------~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g----------d~~ 182 (609)
+..-.-+|++++++.+ ++.-|+. ++.+.+.+-.++.+.. .....++.+ .+-
T Consensus 114 LE~ivmDWL~kml~LP~~Fl~~~~g~GgGviQ-~tases~lvallaaR~---------~~i~~~k~~~p~~~e~~~~~~l 183 (511)
T KOG0628|consen 114 LEVIVMDWLGKMLGLPAEFLSLGLGDGGGVIQ-GTASESVLVALLAART---------EKIEEIKSRPPELHESSVLARL 183 (511)
T ss_pred HHHHHHHHHHHHhcCcHHHhccCCCCCcceEe-cCcchhHHHHHHHHHH---------HHHHHhhcCCCcccchhhhhhh
Confidence 6667778888888753 2224555 4777776666655432 122222322 134
Q ss_pred EEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCC-ceEEEEecccCccccccCHHHHHHHHHH
Q 038499 183 VVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKR-PILGSFSACSNVTGIYSDTRSIARLLHQ 261 (609)
Q Consensus 183 ~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~-~~lv~~s~~sn~TG~~~dl~~I~~la~~ 261 (609)
++.+++..|.|...++...|++++.++.+.+..++.+.|+++|.++...+- |-+++.+-.++.+....++.+|..+|++
T Consensus 184 V~Y~SDqahssveka~~i~~VklR~l~td~n~~mr~~~L~~AIe~D~arGlIPf~v~at~GTT~~ca~D~l~elg~Vc~~ 263 (511)
T KOG0628|consen 184 VAYCSDQAHSSVEKACLIAGVKLRALPTDENFGMRGDTLRKAIEEDIARGLIPFFVCATLGTTSSCAFDELEELGPVCRE 263 (511)
T ss_pred eEEecCcccchHHHhHhhcceeEEEeecccCcCCCHHHHHHHHHHHHhCCCccEEEEEeecCccccccccHHHhcchhhh
Confidence 889999999999999999999999999999889999999999998766554 4467777777778888999999999999
Q ss_pred hCCeEEEeccccCCccc-ccCCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccC--CCCCCccCCCceEeecc
Q 038499 262 YGGFACFDFAASGPYVE-IDVRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLG--SFPPSTCGGGTVNYVNG 336 (609)
Q Consensus 262 ~g~~vivD~A~~~~~~~-id~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~--~~~p~~~ggg~v~~~~~ 336 (609)
+|+|++||+|+++...- ..++.+ +.+.+|.+.+.+|||+..-..+..|++++...... +..|.+.-+....+..
T Consensus 264 ~glWLHVDAAYAGsa~iCpE~r~l~rGie~aDSfn~n~hK~~~vnfDCs~lWvkd~~~~~~~~~vdp~yL~h~~~~~~~- 342 (511)
T KOG0628|consen 264 EGLWLHVDAAYAGSAFICPEFRYLMRGIEYADSFNFNPHKWLLVNFDCSPLWVKDGTKLSRAFNVDPLYLKHAYQGSAP- 342 (511)
T ss_pred cCEEEEeehhhccccccCHHHHHHhhcchhhccccCChhheeEEeeeeecceeecCceeeeeeecChHhhcchhhccCC-
Confidence 99999999998754321 112211 12467999999999987666788899888741000 1222221111100000
Q ss_pred cccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHH---HHHHHHHHHhCCCCceEEeCCCCCCCcc
Q 038499 337 FNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE---TYIERALERLLPNQNIKILGNTSTKRQA 413 (609)
Q Consensus 337 ~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~---~l~~~~~~~L~~~p~i~v~~~~~~~r~~ 413 (609)
.-.|+. -...+|+ ++.-.+......|.+.++++++ ++++.+.+.+.+-+.+++..+ ...+
T Consensus 343 --Dyrhwq-ipl~rRf-----------RSLKlWfv~R~~Gve~lq~~iR~h~~La~~fe~lv~~d~~FE~~~~---~~lg 405 (511)
T KOG0628|consen 343 --DYRHWQ-IPLGRRF-----------RSLKLWFVLRSYGVENLQNYIREHVRLAKEFETLVRADPRFEIVNK---RILG 405 (511)
T ss_pred --Cccccc-cccccch-----------hhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhcCCcceeecc---cccc
Confidence 000111 0111222 2222222224456666655544 467777777888889999876 5789
Q ss_pred eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
.++|+..+ .. ...+.+.+.+++.-.|...+-. +.
T Consensus 406 LvcFRlk~-~N---------------~~ne~Ll~~in~~g~i~l~~~~---------l~--------------------- 439 (511)
T KOG0628|consen 406 LVCFRLKG-DN---------------EINEALLNRLNSSGRIHLVPAS---------LH--------------------- 439 (511)
T ss_pred eeEEeecC-Cc---------------HHHHHHHHHHHhcCcEEEEEee---------ec---------------------
Confidence 99999987 21 2345667777765555554211 10
Q ss_pred CCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhcccc
Q 038499 494 KPGWTRISF-PYYMSNEEFEFTLEALEFIAIYGQRF 528 (609)
Q Consensus 494 ~~g~iRls~-~~~~t~eeid~ll~al~~v~~~~~~~ 528 (609)
..-.+|+.+ +..++++++++..+.|.+.+......
T Consensus 440 gk~vlRf~V~s~~t~~~di~~a~~~I~~~a~~l~~~ 475 (511)
T KOG0628|consen 440 GKFVLRFAVCSPLTNESDIDEAWKIIFEAADELFEA 475 (511)
T ss_pred ceEEEEEEecCCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence 135799998 56778889999999999998875544
|
|
| >PRK08117 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1e-12 Score=142.91 Aligned_cols=359 Identities=15% Similarity=0.111 Sum_probs=199.5
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..++ |-..+.|.+++.+++... ...+. +....+...++.++|+++++..
T Consensus 32 ~~G~~l~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~a~~~q~~~~-~~~~~-----~~~~~~~~~~la~~L~~~~~~~ 102 (433)
T PRK08117 32 GEGCYYYGVDGK---EYLDFTSGIAVANVGHRHPKVVQAIKEQADKL-MHGPS-----GVIYYESILKLAEELAEITPGG 102 (433)
T ss_pred eeeeEEEeCCCC---EEEECCcchhhccCCCCCHHHHHHHHHHHHhc-cCccc-----cccCCHHHHHHHHHHHHhCCCC
Confidence 344555555564 38887654 346788999999988653 11111 1112345677888898888433
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC-------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL-------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G-------------~~ 204 (609)
. +.+.|+.||+.+....+-.+.. + .|.+.+|.+....|.+........+ ..
T Consensus 103 ~-~~v~f~~SGseA~e~AlklAr~--------------~-tgr~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~ 166 (433)
T PRK08117 103 L-DCFFFSNSGAEAIEGALKLAKH--------------V-TKRPYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGS 166 (433)
T ss_pred C-CEEEEeCcHHHHHHHHHHHHHH--------------h-cCCCeEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCC
Confidence 3 3899988898864433322211 1 2222244444444554443322111 11
Q ss_pred EEEEecCCCCC------------CCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 205 VVEIGLDDDGL------------LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 205 vv~v~~~~~g~------------ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
+..+|...... -++++|++.+++....+++.+|++..+....|.+.| +++|.++|++||+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~ 246 (433)
T PRK08117 167 VYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREICDRHGILLIF 246 (433)
T ss_pred cEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCeeCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 33343321110 156677777753212246778999999999999988 99999999999999999
Q ss_pred eccccCC-ccccc--CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc
Q 038499 269 DFAASGP-YVEID--VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 269 D~A~~~~-~~~id--~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
|+++++- ..... ..... -.+|+ .++.|.+|+...+|++++++++ .+.+.....+ ++
T Consensus 247 DEv~tG~gr~G~~~~~~~~g-v~pDi--~t~sK~lg~G~pigav~~~~~i--~~~~~~~~~~-~T--------------- 305 (433)
T PRK08117 247 DEVQTGFGRTGEWFAAQTFG-VVPDI--MTIAKGIASGLPLSAVVASKEL--MEQWPLGSHG-TT--------------- 305 (433)
T ss_pred ecchhccCccccchhHhhcC-CCCCE--eehhhhccCCCcceeEEEcHHH--HhhccCCCCC-CC---------------
Confidence 9998742 11100 01110 12465 4667999865558999999888 3333221110 00
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcce-EEEEeccCC
Q 038499 346 EDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAI-LSFNIHSST 423 (609)
Q Consensus 346 ~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~-~~f~~~~~~ 423 (609)
..+.|.......++++.. + .+.+.++.+++.+++.+.|.++. ...+... ....+. +.+.+.. +
T Consensus 306 -------~~~np~~~aaa~a~L~~l--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~--vrg~Gl~~gi~~~~-~ 370 (433)
T PRK08117 306 -------FGGNPVACAAALATLEVI--K---EEKLLDNANEMGAYALERLEVLKEKHPVIGD--VRGIGLMIGIEIVD-P 370 (433)
T ss_pred -------CCcCHHHHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHHHHhcCCceee--eecCCcEEEEEEec-C
Confidence 023333333334444433 1 12345566666666666665431 0111111 112222 2333322 1
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP 503 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~ 503 (609)
.. .........+.+.+.+ .||.+.+. . + ..+.+|++++
T Consensus 371 ~~----------~~~~~~~~~~~~~l~~-~Gv~~~~~---g-~---------------------------~~~~lRl~p~ 408 (433)
T PRK08117 371 DG----------EPDGDAVEKILDKCLE-KGLLFYLC---G-N---------------------------AGNVLRMIPP 408 (433)
T ss_pred CC----------CcchHHHHHHHHHHHH-CCCEEeec---C-C---------------------------CCCEEEEeCC
Confidence 00 0000123456677755 59877531 0 1 1378999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc
Q 038499 504 YYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 504 ~~~t~eeid~ll~al~~v~~~~ 525 (609)
..+|++|+++++++|.++++..
T Consensus 409 ~~~t~~~i~~~~~~l~~~l~~~ 430 (433)
T PRK08117 409 LTVTKEEIDEGLDILDEALTEY 430 (433)
T ss_pred ccCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653
|
|
| >TIGR02618 tyr_phenol_ly tyrosine phenol-lyase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.6e-13 Score=143.70 Aligned_cols=328 Identities=13% Similarity=0.080 Sum_probs=195.8
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-HHHc
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-WRQS 201 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~~ 201 (609)
+.++++.+++++|.+ .+++|.+|+. |++.+. .++ ++||| +| ++.+|.....+ ....
T Consensus 73 ~~~lE~~va~~~G~~---~av~v~sGT~-Al~ll~-~l~--------------l~pGD--eV--psn~~f~Tt~ahIe~~ 129 (450)
T TIGR02618 73 FYHLERTVRELYGFK---YVVPTHQGRG-AENLLS-QIA--------------IKPGD--YV--PGNMYFTTTRYHQEKN 129 (450)
T ss_pred HHHHHHHHHHHHCCC---eEEEcCCHHH-HHHHHH-HhC--------------CCCcC--EE--CCceeHHHHHHHHHhC
Confidence 567889999999986 6788866666 677654 333 58999 45 55677555544 5778
Q ss_pred CceEEEEecC----------CCCCCCHHHHHHHHhhhccCCCceEEEEecccCcc-cccc---CHHHHHHHHHHhCCeEE
Q 038499 202 LAEVVEIGLD----------DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVT-GIYS---DTRSIARLLHQYGGFAC 267 (609)
Q Consensus 202 G~~vv~v~~~----------~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~T-G~~~---dl~~I~~la~~~g~~vi 267 (609)
|+..+.++.+ .+|.+|+++|+++|+.. ...+++++.+..++|.. |... ++++|.++|++||+.+|
T Consensus 130 Gav~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~-~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I~elA~~~Gl~vi 208 (450)
T TIGR02618 130 GATFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEV-GADKIPYICLAVTVNLAGGQPVSMANMREVRELCEAHGIKVF 208 (450)
T ss_pred CeEEEeeecccccccccCCCCCCCcCHHHHHHHhccc-cCcccCceEEEEecccCCCeeCCHHHHHHHHHHHHHcCCEEE
Confidence 8876666443 36899999999999842 11245577777777865 7884 47899999999999999
Q ss_pred EeccccCCc-----------ccccCCCC---CCCCccEEEEcCCCCCCCCCCcEEEEEech-hhc-cCCCCCCccCCCce
Q 038499 268 FDFAASGPY-----------VEIDVRSG---QTDGYDAIFLSTHKFLGGPGSPGILLMTKA-LYQ-LGSFPPSTCGGGTV 331 (609)
Q Consensus 268 vD~A~~~~~-----------~~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~L~~~~~-~~~-l~~~~p~~~ggg~v 331 (609)
.|+|+.++. ...++.+. -...+|.+++|.||-.++|.| |+|+++++ ++. .+.....+ + |..
T Consensus 209 ~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~G-G~l~~~d~~l~~k~r~~~~~~-e-G~~ 285 (450)
T TIGR02618 209 YDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIG-GFLCMNDDEMFQSAKELVVVF-E-GMP 285 (450)
T ss_pred EEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCc-eEEEeCCHHHHHHHHHHhhhc-C-Ccc
Confidence 999987742 11112100 013679999999999999986 88886654 321 11111111 1 110
Q ss_pred EeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCC
Q 038499 332 NYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKR 411 (609)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r 411 (609)
..|.- .+.-.++++.-+.+.+.. ...++.....+++.+.|.+. |+.+..+..
T Consensus 286 ---------------------tyGgl--a~r~~~ala~gL~e~~~~-~y~~~r~~~a~~La~~L~~~-Gvpv~~p~g--- 337 (450)
T TIGR02618 286 ---------------------SYGGL--AGRDMEAMAIGIREAVDY-EYIEHRVKQVRYLGDKLKAA-GVPIVEPVG--- 337 (450)
T ss_pred ---------------------ccCch--hhhhHHHHHHHHHHhhhH-HHHHHHHHHHHHHHHHHHHC-CCcccCCCC---
Confidence 01110 110112222222232222 33444455688889999887 888865532
Q ss_pred cceEEEEe----ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHh
Q 038499 412 QAILSFNI----HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQ 487 (609)
Q Consensus 412 ~~~~~f~~----~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~ 487 (609)
++..|.- .| .. ...-.....++..|....||-..- .|..+++.+++..+
T Consensus 338 -gh~V~vda~~~lp-h~-----------~~~~~p~~al~~~ly~~~gir~~e-------~g~~~~~~~~~~~~------- 390 (450)
T TIGR02618 338 -GHAVFLDARRFLP-HI-----------PQDQFPAQSLAASIYVETGVRSME-------RGIVSAGRNNVTGE------- 390 (450)
T ss_pred -cceEEEEhHHhCC-CC-----------ChhhChHHHHHHHHHHHhCccEEe-------ecceecccCCCCCc-------
Confidence 3333331 11 11 011134566777777777875331 11122222211111
Q ss_pred hCCCCCCC--cEEEEecC-CCCCHHHHHHHHHHHHHHHHhcccccCCCccccc
Q 038499 488 KGYVGVKP--GWTRISFP-YYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIK 537 (609)
Q Consensus 488 ~~~~~~~~--g~iRls~~-~~~t~eeid~ll~al~~v~~~~~~~~p~y~~~~~ 537 (609)
-..+ ..+|+.++ ---|.+.+|++.++|..+.++....- -|.|-+.
T Consensus 391 ----~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~~~-g~~~~~e 438 (450)
T TIGR02618 391 ----HHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYKHRDDIR-GLKMVYE 438 (450)
T ss_pred ----ccCCccceeeeccccccccHhHHHHHHHHHHHHHhhHhhcC-ceEEeec
Confidence 0112 68999985 22378999999999999998765432 4555443
|
This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212) |
| >PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-12 Score=142.73 Aligned_cols=348 Identities=15% Similarity=0.163 Sum_probs=205.3
Q ss_pred CCC-ccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC
Q 038499 64 GKN-AEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG 136 (609)
Q Consensus 64 g~~-~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~ 136 (609)
+.+ .++.+..|+ -|+|..++ |-..+.|.+++.+++.... +...+ .......++.+.|.+.+..
T Consensus 70 ~~G~~~l~D~dG~---~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~l~---~~~~~----~~~~~~~~lae~L~~~~p~ 139 (459)
T PRK11522 70 AGGLNTLVDTQGQ---EFIDCLGGFGIFNVGHRNPVVVSAVQNQLAKQP---LHSQE----LLDPLRAMLAKTLAALTPG 139 (459)
T ss_pred ccCeEEEEECCCC---EEEECCcCHHhhhcCCCCHHHHHHHHHHHhhCc---ccccc----cCCHHHHHHHHHHHHhCCC
Confidence 445 566666664 38997544 5567899999998886431 11111 1234456677777777654
Q ss_pred CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcCc------------
Q 038499 137 GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSLA------------ 203 (609)
Q Consensus 137 ~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G~------------ 203 (609)
+.+ .+.|+.|||.+ +...+++-- ... -+.| +..|+.....||+... .....+-
T Consensus 140 ~~~-~v~f~~SGsEA-ve~AlklAr-~~t----------~~~g-r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~ 205 (459)
T PRK11522 140 KLK-YSFFCNSGTES-VEAALKLAK-AYQ----------SPRG-KFTFIATSGAFHGKSLGALSATAKSTFRKPFMPLLP 205 (459)
T ss_pred CCC-EEEEeCCchHH-HHHHHHHHH-HHh----------ccCC-CcEEEEecCCCCCCcHHHhhhcCCcccccCCCCCCC
Confidence 433 79999888886 333322210 000 0123 2246666656665432 2222221
Q ss_pred eEEEEecCCCCCCCHHHHHHHHhhhc-cCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Ccc
Q 038499 204 EVVEIGLDDDGLLDIEALRSKLELYK-DAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYV 277 (609)
Q Consensus 204 ~vv~v~~~~~g~ld~e~L~~al~~~~-~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~ 277 (609)
.+..+|. -|++++++++.... ..+++..+++..+....|.+.| ++++.++|++||+++|+|+++.+ |-.
T Consensus 206 ~~~~~~~-----~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tG~GRt 280 (459)
T PRK11522 206 GFRHVPF-----GNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQTGMGRT 280 (459)
T ss_pred CCcccCC-----CCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHHHHHHHcCCEEEeccceecCCcc
Confidence 1122222 16788888886421 1235678899999999999988 89999999999999999999853 211
Q ss_pred cc--cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCC--CCccCCCceEeecccccccccccccccccc
Q 038499 278 EI--DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFP--PSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 278 ~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~--p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
.- -....+ -.+|++++ .|.+||. ..+|.+++++++. +.+. +...+ + -
T Consensus 281 G~~~a~e~~g-v~PDivt~--gK~lggG~~Pigav~~~~~i~--~~~~~~~~~~~-~----------------------T 332 (459)
T PRK11522 281 GKMFACEHEN-VQPDILCL--AKALGGGVMPIGATIATEEVF--SVLFDNPFLHT-T----------------------T 332 (459)
T ss_pred chhhhhhccC-CCCCEEEe--chhhhCCCccceeEEEcHHHH--HHhccCCcccC-C----------------------C
Confidence 10 011110 13588765 5999874 2478888888873 2221 11000 0 0
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----Cc-e-EEeCCCCCCCcceEEEEeccCCCCC
Q 038499 353 SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN----QN-I-KILGNTSTKRQAILSFNIHSSTINS 426 (609)
Q Consensus 353 ~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----p~-i-~v~~~~~~~r~~~~~f~~~~~~~~~ 426 (609)
..|.|...+...+.++... .+.+.++.+++.+++.+.|+++ |. + ++-+ +..++.+.+.. .
T Consensus 333 ~~gnp~~~Aaala~L~~i~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG-----~Gl~~giel~~-~--- 398 (459)
T PRK11522 333 FGGNPLACAAALATINVLL-----EQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARG-----KGMLMAIEFVD-N--- 398 (459)
T ss_pred CCCCHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEe-----ceeEEEEEecC-c---
Confidence 1234444444455555442 2345667777777777777653 31 1 2222 23444454443 1
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCC
Q 038499 427 SLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYM 506 (609)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~ 506 (609)
.....+.+.|.+ .||.+.+.. + ....+|+.++..+
T Consensus 399 -------------~~~~~i~~~l~~-~Gvl~~~~~----~---------------------------~~~~lr~~Ppl~~ 433 (459)
T PRK11522 399 -------------EIGYNFASEMFR-QRVLVAGTL----N---------------------------NAKTIRIEPPLTL 433 (459)
T ss_pred -------------hHHHHHHHHHHH-CCeEEEecC----C---------------------------CCCEEEEECCccC
Confidence 124567777766 599886210 0 1368999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccc
Q 038499 507 SNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 507 t~eeid~ll~al~~v~~~~~~ 527 (609)
|++|+++++++++++++...+
T Consensus 434 t~~~id~~l~~l~~~l~~~~~ 454 (459)
T PRK11522 434 TIEQCEQVLKAARKALAAMRV 454 (459)
T ss_pred CHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999998876543
|
|
| >TIGR03372 putres_am_tran putrescine aminotransferase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.1e-12 Score=139.72 Aligned_cols=339 Identities=15% Similarity=0.144 Sum_probs=196.9
Q ss_pred ccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 038499 67 AEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQED 140 (609)
Q Consensus 67 ~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~ 140 (609)
.++.+..|+ .|+|..++ |-..+.|.+++.+++.... .++. + ...+...++.+.+.+.+....+
T Consensus 67 ~~l~D~dG~---~ylD~~~g~~~~~lGh~hp~v~~Av~~ql~~l~--~~~~-~----~~~~~~~~lAe~L~~~~p~~~~- 135 (442)
T TIGR03372 67 NTLIDTQGN---EFIDCLGGFGIFNVGHRNPNVIAAVENQLAKQP--LHSQ-E----LLDPLRALLAKTLAALTPGKLK- 135 (442)
T ss_pred eEEEECCCC---EEEECCccHHhhhcCCCCHHHHHHHHHHHHhCC--Cccc-c----cCCHHHHHHHHHHHHhCCCCcC-
Confidence 456566664 49997544 5667899999999886542 1111 1 1134456677777777754433
Q ss_pred cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC------------ceEEE
Q 038499 141 AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------AEVVE 207 (609)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------~~vv~ 207 (609)
.+.|+.|||.+ +...+++--. . .-+.| +..|++....||... ..+...+ ..+..
T Consensus 136 ~v~f~~SGsEA-~e~AlklAr~-~----------t~~~g-r~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~ 202 (442)
T TIGR03372 136 YSFFCNSGTES-VEAALKLAKA-Y----------QSPRG-KFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHH 202 (442)
T ss_pred EEEEeCCchHH-HHHHHHHHHH-H----------HhhcC-CcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEE
Confidence 78999888886 3333222100 0 00123 235666666566543 2222211 11233
Q ss_pred EecCCCCCCCHHHHHHHHhhhc-cCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Ccccc--
Q 038499 208 IGLDDDGLLDIEALRSKLELYK-DAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVEI-- 279 (609)
Q Consensus 208 v~~~~~g~ld~e~L~~al~~~~-~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~i-- 279 (609)
+|.+ |++++++.+++.. ..+++..+++..+....|.+.| +++|.++|++||+++|+|+++.+ |-..-
T Consensus 203 ~p~~-----d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~ 277 (442)
T TIGR03372 203 VAFG-----DIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRTGKMF 277 (442)
T ss_pred eCCC-----CHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCccccch
Confidence 4332 6778877775311 1245778889999988999988 89999999999999999999853 22111
Q ss_pred cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCC--CCccCCCceEeecccccccccccccccccccCCC
Q 038499 280 DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFP--PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~--p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
-..... -.+|++++ .|.+||. ..+|.+++++++ .+.+. +...++ -..|.
T Consensus 278 a~e~~g-v~PDivt~--gK~lg~G~~Pigavv~~~~i--~~~~~~~~~~~~~-----------------------T~~gn 329 (442)
T TIGR03372 278 ACEHEG-VQPDILCL--AKALGGGVMPIGATIATEAV--FSVLFDNPFLHTT-----------------------TFGGN 329 (442)
T ss_pred hhhhcC-CCCCeeee--hhhhcCCcccceEEEecHHH--HHhhhccCccccC-----------------------CCCCC
Confidence 011110 13588775 5999864 247888888887 33321 111000 01344
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CC-ce-EEeCCCCCCCcceEEEEeccCCCCCcCCC
Q 038499 357 PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQ-NI-KILGNTSTKRQAILSFNIHSSTINSSLGE 430 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p-~i-~v~~~~~~~r~~~~~f~~~~~~~~~~~~~ 430 (609)
|--.+...+.++.. +. +.+.++.+++.+++++.|++ .| .+ ++-+ +..++.+.+.. +
T Consensus 330 p~~~Aaa~a~L~~i--~~---~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG-----~Gl~~giel~~-~------- 391 (442)
T TIGR03372 330 PLACAAALATINEL--LE---KNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARG-----KGLLMAIEFRD-N------- 391 (442)
T ss_pred HHHHHHHHHHHHHH--Hh---ccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEec-----ceEEEEEEeCC-h-------
Confidence 44444445555554 22 23445555556666655543 33 21 2322 23444444433 1
Q ss_pred CCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHH
Q 038499 431 NTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEE 510 (609)
Q Consensus 431 ~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ee 510 (609)
.....+.+.|.+ .||.+... . + .+..+|+.++..+|++|
T Consensus 392 ---------~~~~~i~~~l~~-~Gvl~~~~---~-~---------------------------~~~~lr~~Ppl~~t~~~ 430 (442)
T TIGR03372 392 ---------EIGYAFAKELFQ-QNILVAGT---L-N---------------------------NAKSIRIEPPLTITIEQ 430 (442)
T ss_pred ---------HHHHHHHHHHHH-CCcEEeec---C-C---------------------------CCCEEEEECCcccCHHH
Confidence 124567777866 59988621 0 1 13689999999999999
Q ss_pred HHHHHHHHHHH
Q 038499 511 FEFTLEALEFI 521 (609)
Q Consensus 511 id~ll~al~~v 521 (609)
++++++++++.
T Consensus 431 id~~~~~l~~~ 441 (442)
T TIGR03372 431 CALVIKAAKDA 441 (442)
T ss_pred HHHHHHHHHHh
Confidence 99999999875
|
Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine. |
| >PRK13237 tyrosine phenol-lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.8e-13 Score=142.07 Aligned_cols=327 Identities=14% Similarity=0.082 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-HHHc
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-WRQS 201 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~~ 201 (609)
+.++++.+++++|.+ .+++|.||+. |++.+ ..++ +++|| +| ++.+|.....+ ....
T Consensus 80 ~~~LE~~vAe~lG~e---~aV~v~sGTa-Al~ll-~~l~--------------v~pGd--~V--p~n~~f~Tt~ahI~~~ 136 (460)
T PRK13237 80 FYHLEETVQEYYGFK---HVVPTHQGRG-AENLL-SRIA--------------IKPGQ--YV--PGNMYFTTTRYHQELN 136 (460)
T ss_pred HHHHHHHHHHHHCCC---eEEEeCCHHH-HHHHH-HHhC--------------CCCcC--EE--CCccchHhhHHHHHhC
Confidence 567889999999996 5788867776 46654 3343 57898 43 66667665555 5667
Q ss_pred CceEEEEec----------CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcc-cccc---CHHHHHHHHHHhCCeEE
Q 038499 202 LAEVVEIGL----------DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVT-GIYS---DTRSIARLLHQYGGFAC 267 (609)
Q Consensus 202 G~~vv~v~~----------~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~T-G~~~---dl~~I~~la~~~g~~vi 267 (609)
|+..+-+.. ..+|.+|+++|+++|++. ...++.++.+..++|.. |... ++++|.++|++||+.+|
T Consensus 137 Ga~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~-~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi 215 (460)
T PRK13237 137 GGIFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEV-GAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVF 215 (460)
T ss_pred CcEEEeeecccccccccCCCCCCCcCHHHHHHHhccc-cCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEE
Confidence 885554431 236899999999999842 12355677777778887 6665 67999999999999999
Q ss_pred EeccccCCcc-----------cccCC----CCCCCCccEEEEcCCCCCCCCCCcEEEEEechhh-c-cCCCCCCccCCCc
Q 038499 268 FDFAASGPYV-----------EIDVR----SGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALY-Q-LGSFPPSTCGGGT 330 (609)
Q Consensus 268 vD~A~~~~~~-----------~id~~----~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~-~-l~~~~p~~~ggg~ 330 (609)
.|+|++.+.. ...+. +. ....|.+++|+||.++++.| |+++++++-. + ++.+...+.|--+
T Consensus 216 ~DaAra~gna~fI~~re~~y~~~~i~ei~~e~-~s~aD~~t~S~~K~~~~~~G-G~i~t~D~eL~~~~r~~~~~~eG~~t 293 (460)
T PRK13237 216 FDATRCVENAYFIKEREEGYQDKSIKEIVHEM-FSYADGCTMSGKKDCLVNIG-GFLAMNDEELFDEAKELVVVYEGMPS 293 (460)
T ss_pred EECcchhcChhhhcccccccCCCcHhHHhhhc-cCcCcEEEEeCCCCCCCCCc-eEEEECCHHHHHHHHHhccccCCCcC
Confidence 9999887622 11111 00 12579999999999998875 8888886542 1 1112112111100
Q ss_pred eEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCC
Q 038499 331 VNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTK 410 (609)
Q Consensus 331 v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~ 410 (609)
.|.. .+--.++++.-+.+....+.+ ++.....+++.+.|.+. |+.|..|.
T Consensus 294 -----------------------ygg~--~grd~~alAvgl~E~~~~~y~-~~ri~~~~~l~~~L~~~-Gvpv~~p~--- 343 (460)
T PRK13237 294 -----------------------YGGM--AGRDMEAMAIGIEESVQYEYI-EHRVGQVRYLGEKLLAA-GVPIVEPV--- 343 (460)
T ss_pred -----------------------CCCh--hhhHHHHHHhHHHhhchHHHH-HHHHHHHHHHHHHHHHC-CCceecCC---
Confidence 1111 010012222222233333333 34445678888888775 88888763
Q ss_pred CcceEEEEe----ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEec-cCcccCChhhhhhcCCChhHHHHHHHH
Q 038499 411 RQAILSFNI----HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQAR-GGCACAGPYGHHLLDLDEAQSYQIRSA 485 (609)
Q Consensus 411 r~~~~~f~~----~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~-~G~~ca~p~~~~ll~i~~~~~~~~~~~ 485 (609)
.++-.|+- .| .. ...-.....++..|....||-.. -|. .+++.+++..+
T Consensus 344 -ggH~v~vda~~~lp-h~-----------~~~~~p~~al~~~ly~~~GiR~~e~g~--------~~~~~~~~~~~----- 397 (460)
T PRK13237 344 -GGHAVFLDARRFLP-HL-----------PQDQFPAQALAAELYIESGVRSMERGI--------VSAGRDPKTGE----- 397 (460)
T ss_pred -CceEEEEEhHHhCC-CC-----------CcccChHHHHHHHHHHHhCcCeEeecc--------eecccCCCCCc-----
Confidence 23333331 11 10 01113456777777777787532 122 22222211111
Q ss_pred HhhCCCCCCC--cEEEEecC-CCCCHHHHHHHHHHHHHHHHhcccccCCCcccccC
Q 038499 486 IQKGYVGVKP--GWTRISFP-YYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKT 538 (609)
Q Consensus 486 ~~~~~~~~~~--g~iRls~~-~~~t~eeid~ll~al~~v~~~~~~~~p~y~~~~~~ 538 (609)
-..+ ..+|+.++ ---|.+.+|++.++|..+.++.... +-|.|-+..
T Consensus 398 ------~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~~~~~~-~g~~~~~ep 446 (460)
T PRK13237 398 ------NHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYKHREDI-RGLRFVYEP 446 (460)
T ss_pred ------cCCCccceeeeccccccccHHHHHHHHHHHHHHHHhHhhc-CCeEEeecC
Confidence 0112 68999985 2238899999999999999876543 345554443
|
|
| >TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-12 Score=138.04 Aligned_cols=356 Identities=16% Similarity=0.107 Sum_probs=192.2
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+++.++.+..|+ -|+|..++ |-..+.|.+++.+++.... ..+. .........++.+.|.+.+...
T Consensus 22 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~~~-~~~~-----~~~~~~~~~~la~~l~~~~p~~ 92 (420)
T TIGR00700 22 AEGAILEDVDGN---RLIDFASGIAVLNIGHSHPRVVDAVRTQVAEFT-HTCF-----MVTPYEGYVALAEKLNRIAPGS 92 (420)
T ss_pred eeeeEEEeCCCC---EEEECccCHHhccCCCCCHHHHHHHHHHHHhcc-Cccc-----cccCChHHHHHHHHHHHhCCCC
Confidence 455666666665 38997654 5667899999998886531 1111 0011233455666777776532
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC-------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL-------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G-------------~ 203 (609)
..+.+.|+.+||++ +...+++-- .. .|.+ .|+.-...||+.. .+....+ -
T Consensus 93 ~~~~v~f~~sGseA-~e~AlklAr-------------~~-tgr~-~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~ 156 (420)
T TIGR00700 93 GPKKSVFFNSGAEA-VENAVKIAR-------------SY-TGRP-GVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAP 156 (420)
T ss_pred CCCEEEEeCCcHHH-HHHHHHHHH-------------Hh-cCCC-cEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCC
Confidence 22379999888885 333333210 01 2322 4555555555443 2222111 1
Q ss_pred eEEEEecCCCC-------CC----CHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 204 EVVEIGLDDDG-------LL----DIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 204 ~vv~v~~~~~g-------~l----d~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
.+..++..... .. +++++++.+......+++..+++..+...+|.+.+ +++|.++|++||+++|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~ 236 (420)
T TIGR00700 157 EVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIA 236 (420)
T ss_pred CcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 22333332100 01 25567776631112256778999999999999877 78899999999999999
Q ss_pred eccccCC-ccc--ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc
Q 038499 269 DFAASGP-YVE--IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 269 D~A~~~~-~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
|+++..- ... ..+... .-..|+++ +.|.+++...+|++++++++ .+.+.+...+ .+
T Consensus 237 DEV~tg~gr~g~~~a~~~~-~~~pDi~~--lsK~l~~G~pig~v~~~~~i--~~~~~~~~~~-~T--------------- 295 (420)
T TIGR00700 237 DEVQTGFARTGAMFACEHE-GPEPDLIT--TAKSLADGLPLSGVTGRAEI--MDAPAPGGLG-GT--------------- 295 (420)
T ss_pred EecccCCcccchhHHHhhc-CCCCCEEE--eeccccCCcceEEEEecHHH--HhhcCCCCcC-CC---------------
Confidence 9997642 221 111111 01357665 56999865668999999988 4444322111 00
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh----CCCCceEEeCCCCCCCcceEEEEecc
Q 038499 346 EDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL----LPNQNIKILGNTSTKRQAILSFNIHS 421 (609)
Q Consensus 346 ~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L----~~~p~i~v~~~~~~~r~~~~~f~~~~ 421 (609)
..+.|-......+++++. +..+ +.++.+++.+++.+.| ..+|.+.-+.. ...++.+.+..
T Consensus 296 -------~~~~pl~~aaa~a~l~~l--~~~~---~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg----~G~~~~i~~~~ 359 (420)
T TIGR00700 296 -------YAGNPLACAAALAVLAII--ESEG---LIERARQIGRLVTDRLTTLKAVDPRIGDVRG----LGAMIAVELVD 359 (420)
T ss_pred -------CCcCHHHHHHHHHHHHHH--Hhcc---HHHHHHHHHHHHHHHHHHHHhhCCCEEEeec----cceEEEEEEec
Confidence 123332223333444443 2222 3334444444444444 33444322222 23344443322
Q ss_pred CCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEe
Q 038499 422 STINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRIS 501 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls 501 (609)
.... .........+.+.+.+ .||.+.++..+ .+++||+
T Consensus 360 -~~~~---------~~~~~~~~~l~~~~~~-~Gv~i~p~~~f-------------------------------~~~lRl~ 397 (420)
T TIGR00700 360 -PGTT---------EPDAGLAERIATAAHA-AGLLLLTCGMF-------------------------------GNIIRFL 397 (420)
T ss_pred -CCCC---------CccHHHHHHHHHHHHH-CCeEEeccCCC-------------------------------CCEEEEE
Confidence 1000 0000013345555544 69998754211 2689999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHH
Q 038499 502 FPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 502 ~~~~~t~eeid~ll~al~~v~~ 523 (609)
++...+++++++++++|.+++.
T Consensus 398 p~l~~~~~~l~~~~~~l~~~l~ 419 (420)
T TIGR00700 398 PPLTIGDELLSEGLDILCAILA 419 (420)
T ss_pred CCCCcCHHHHHHHHHHHHHHhh
Confidence 9877899999999999998763
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06541 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.6e-12 Score=141.82 Aligned_cols=373 Identities=13% Similarity=0.072 Sum_probs=200.2
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|++ |+|..++ |-..+.|.+++.+++.... +... .+ ...+...++.+.+.+.+..+
T Consensus 41 a~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~v~~Av~~q~~~~~---~~~~--~~-~~~~~~~~la~~l~~~~p~~ 111 (460)
T PRK06541 41 GEGCYIWDDRGKR---YLDGLAGLFVVQVGHGRAELAEAAAKQAGTLA---FFPL--WS-YAHPPAIELAERLAALAPGD 111 (460)
T ss_pred CcccEEEeCCCCE---EEECCccHHhccCCCCCHHHHHHHHHHHhhCc---Cccc--cc-cCCHHHHHHHHHHHHhCCCC
Confidence 5566677776753 8997654 5667899999998886431 1100 01 11234556677777776543
Q ss_pred CCCcEEEeCChHHHHHHHHHHH-hcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEV-MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------~ 203 (609)
-+ .+.|+.||+.+ +...+++ .... + ..=+++ +..|+.-...||+.. ......| .
T Consensus 112 ~~-~v~f~~sGseA-ve~AlklAr~~~-----~----~~g~~~-r~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~ 179 (460)
T PRK06541 112 LN-RVFFTTGGSEA-VESAWKLAKQYF-----K----LTGKPG-KHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVP 179 (460)
T ss_pred cC-EEEEcCCcHHH-HHHHHHHHHHHH-----H----hcCCCC-ccEEEEEcCcccCcchhhhcCcCChhhccccCCCCC
Confidence 33 89999888886 3322222 1100 0 000122 224555554555433 2221111 1
Q ss_pred eEEEEecCCCC-----CCC--------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeE
Q 038499 204 EVVEIGLDDDG-----LLD--------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFA 266 (609)
Q Consensus 204 ~vv~v~~~~~g-----~ld--------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~v 266 (609)
.+..++..... .-+ ++.+++.+.+. ..+++.+++++.+++..|.+.+ +++|.++|++||+++
T Consensus 180 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~Aavi~EPv~g~~G~~~~~~~yl~~l~~lc~~~g~ll 258 (460)
T PRK06541 180 GGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFE-GPDTVAAVFLEPVQNAGGCFPPPPGYFERVREICDRYDVLL 258 (460)
T ss_pred CcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhc-CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 23334322110 012 36677777531 1135668888888999999988 899999999999999
Q ss_pred EEeccc-cCCccccc--CCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccc
Q 038499 267 CFDFAA-SGPYVEID--VRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342 (609)
Q Consensus 267 ivD~A~-~~~~~~id--~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (609)
|+|+++ ++|-..-- ....+ -..|++++ .|.++|.. .+|.+++++++. +.+.+.. +...
T Consensus 259 I~DEV~tGfGR~G~~~a~~~~g-v~PDivt~--gK~l~~G~~pigav~~~~~i~--~~~~~~~-~~~~------------ 320 (460)
T PRK06541 259 VSDEVICAFGRLGEMFGCERFG-YVPDIITC--AKGITSGYSPLGAMIASDRLF--EPFLDGP-TMFL------------ 320 (460)
T ss_pred EEechhhCCCcCchhhhhhhcC-CCCCEEEe--cccccCCccceeEEEEcHHHH--HHhhcCC-Cccc------------
Confidence 999998 44422111 11110 13587764 69998643 479999998883 3332110 0000
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccC
Q 038499 343 LYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSS 422 (609)
Q Consensus 343 ~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~ 422 (609)
...-..|.|...+...+.+..+ + .+.+.++.+++.+++.+.|+++....+++.. .....++.+.+..
T Consensus 321 ------~~~T~~gnp~~~aaala~l~~l--~---~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~v-rg~Gl~~~ie~~~- 387 (460)
T PRK06541 321 ------HGYTFGGHPVSAAVALANLDIF--E---REGLLDHVRDNEPAFRATLEKLLDLPIVGDV-RGDGYFYGIELVK- 387 (460)
T ss_pred ------cCCCCCCCHHHHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHHhhcCCCeEEE-EecceEEEEEEec-
Confidence 0000123333333334444433 1 2245567777777777777654221111110 0122344444322
Q ss_pred CCCCcCCCCCCCCCCC---CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 423 TINSSLGENTKTETDK---PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~---~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
+.... .+.... ......+.+.|.+ .||.+.+. +. ....+|
T Consensus 388 ~~~~~-----~~~~~~~~~~~~~~~~~~~l~~-~Gi~~~~~-----~~--------------------------g~~~lr 430 (460)
T PRK06541 388 DKATK-----ETFTDDESERLLRGFLSPALFE-AGLYCRAD-----DR--------------------------GDPVVQ 430 (460)
T ss_pred Ccccc-----cCCcchhhhhhHHHHHHHHHHh-CCeEEEec-----CC--------------------------CCCEEE
Confidence 10000 000000 0011245666766 59988731 00 136799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
|+++..+|++|+++++++|++++...+
T Consensus 431 l~Ppl~~t~~~id~~~~~l~~~l~~~~ 457 (460)
T PRK06541 431 LAPPLISGQEEFDEIEQILRSVLTEAW 457 (460)
T ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999987654
|
|
| >PRK08360 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.9e-12 Score=137.42 Aligned_cols=358 Identities=15% Similarity=0.057 Sum_probs=197.2
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..++ |-..+.|.+++.+++..... .+. ...+.....++.+.|.+.++..
T Consensus 30 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~-~~~-----~~~~~~~~~~la~~L~~~~p~~ 100 (443)
T PRK08360 30 AENAKVWDIEGN---EYIDFLSDAAVQNVGHNNPRVVKAIKEQTDKLIH-YTP-----IYGFPVEPLLLAEKLIEIAPGD 100 (443)
T ss_pred cceeEEEECCCC---EEEEccccHhhcccCCCCHHHHHHHHHHHHhccC-ccc-----cccCcHHHHHHHHHHHHhCCCC
Confidence 445556666664 38997654 55678999999988865311 111 0111234556777788887654
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHcCc------------e
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQSLA------------E 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G~------------~ 204 (609)
-+ .|.|+.|||.+ +...+++-- .. .|.+ .|+.-...||+. ..++...+. .
T Consensus 101 ~~-~v~f~~sGsEA-ve~AlklAr-------------~~-tgr~-~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~ 163 (443)
T PRK08360 101 NP-KVSFGLSGSDA-NDGAIKFAR-------------AY-TKRR-KILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSD 163 (443)
T ss_pred CC-EEEEcCCHHHH-HHHHHHHHH-------------Hh-cCCC-eEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCC
Confidence 33 79999888886 333333210 01 2222 455555444443 333322221 2
Q ss_pred EEEEecCCCCC------------CCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 205 VVEIGLDDDGL------------LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 205 vv~v~~~~~g~------------ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
+..++...... -+++.+++.+.+....+++..++++..+|++|.+.+ +++|.++|++||+++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~ 243 (443)
T PRK08360 164 VHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVV 243 (443)
T ss_pred cEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEE
Confidence 33444322100 134556666653222257889999988899999876 77899999999999999
Q ss_pred eccccC-Ccccc--cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc
Q 038499 269 DFAASG-PYVEI--DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 269 D~A~~~-~~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
|+++.. +...- ...... ...|++++ .|.+++...+|++++++++ .+.+.....+ .
T Consensus 244 DEv~~g~gr~G~~~a~~~~~-~~pDiitl--sK~l~~G~pigav~~~~~i--~~~~~~~~~~-~---------------- 301 (443)
T PRK08360 244 DEVQSGLGRTGKWFAIEHFG-VEPDIITL--GKPLGGGLPISATIGRAEI--MDSLPPLAHA-F---------------- 301 (443)
T ss_pred eccccCCCcCccchhhhhcC-CCCCEEEe--cccccCCceeEEEEEcHHH--HhhhcCCCCC-C----------------
Confidence 999763 22211 000110 13577755 7999854458999999887 3343221000 0
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcceEEEEeccCCC
Q 038499 346 EDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAILSFNIHSSTI 424 (609)
Q Consensus 346 ~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~~~f~~~~~~~ 424 (609)
...+.|.....+.+++..+.. +.+.++.+++.+++++.|+++. ...+++.. ..+..++.+.+.. +.
T Consensus 302 ------T~~~~p~~~aaa~a~l~~l~~-----~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v-rg~Gl~~gie~~~-~~ 368 (443)
T PRK08360 302 ------TLSGNPVASAAALAVIEEIEE-----KNLLKRAEKLGNYTKKRLEEMKKKHELIGDV-RGIGLMIGVDLVK-DR 368 (443)
T ss_pred ------CCCcCHHHHHHHHHHHHHHHH-----cCHHHHHHHHHHHHHHHHHHHHHhCCCeeee-eccceEEEEEEec-CC
Confidence 012333333333444444321 2345566666666666654320 11111111 1122333333322 10
Q ss_pred CCcCCCCCCCCCCC-CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC
Q 038499 425 NSSLGENTKTETDK-PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP 503 (609)
Q Consensus 425 ~~~~~~~~~~~~~~-~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~ 503 (609)
. .+.. .-....+...|.+ .||.+... ....+|++++
T Consensus 369 ~---------~~~~~~~~~~~~~~~l~~-~Gi~~~~~---------------------------------~~~~lr~~P~ 405 (443)
T PRK08360 369 E---------TKERAYEEAAKVVWRAWE-LGLIVTFF---------------------------------SGNVLRIQPP 405 (443)
T ss_pred c---------ccCccHHHHHHHHHHHHH-CCeEEeec---------------------------------CCCEEEEeCC
Confidence 0 0000 0113456666755 59887521 1367999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc
Q 038499 504 YYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 504 ~~~t~eeid~ll~al~~v~~~~ 525 (609)
+.+|++|++++++++++++...
T Consensus 406 l~~t~~~id~~~~~l~~~l~~~ 427 (443)
T PRK08360 406 LTIEKEVLDEGLDILEEAIEDV 427 (443)
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999998764
|
|
| >PRK04612 argD acetylornithine transaminase protein; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.7e-12 Score=136.97 Aligned_cols=349 Identities=14% Similarity=0.115 Sum_probs=191.1
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|++ |+|..++ |-..+.|.+++.+++.... +.... ..++...++.++|.+..+..
T Consensus 29 a~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~~~----~~~~~~~~la~~L~~~~~~~ 98 (408)
T PRK04612 29 GQGSRVWDDQGRE---YLDLAAGIAVCGLGHNDPDLVAALTEQAGKLW---HTSNV----FYSAPPLKLAEELVTASRFA 98 (408)
T ss_pred eeeCEEEECCCCE---EEEcCccHhhccCCCCCHHHHHHHHHHHHhcc---ccccc----cCCHHHHHHHHHHHhhCCCC
Confidence 5566677777753 8997644 5667899999998886531 11100 11233445666676665432
Q ss_pred CCCcEEEeCChHHHHHHHHHHH-hcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcCc------------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEV-MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSLA------------ 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G~------------ 203 (609)
+.+.|+.||+++. ...+++ .... . ..=++..+..|+.-...||+.. ..+...+-
T Consensus 99 --~~v~f~~sGseA~-e~AlklAr~~~------~---~~g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~ 166 (408)
T PRK04612 99 --EKVFLCNSGTEAN-EAAIKLVRKWA------S---SQGRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPG 166 (408)
T ss_pred --CEEEEcCchHHHH-HHHHHHHHHHH------H---hhCCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCC
Confidence 4899998888863 322222 1100 0 0001112335666555555543 33322221
Q ss_pred eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccc-cC----HHHHHHHHHHhCCeEEEeccccCCccc
Q 038499 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY-SD----TRSIARLLHQYGGFACFDFAASGPYVE 278 (609)
Q Consensus 204 ~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~-~d----l~~I~~la~~~g~~vivD~A~~~~~~~ 278 (609)
.+..++. -|++++++++.. +++.++++. |.+.+|-+ .+ +++|.++|++||+++|+|+++++-...
T Consensus 167 ~~~~~~~-----~d~~~l~~~~~~----~~~aavi~e-P~~~~gg~~~~~~~~l~~l~~l~~~~g~llI~DEv~tg~gr~ 236 (408)
T PRK04612 167 GFRYVDF-----NDVEALEAAMAG----GDVAAVMLE-PIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRT 236 (408)
T ss_pred CceEcCC-----CCHHHHHHhhCC----CCEEEEEEC-CccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcC
Confidence 1122222 278999988862 344555555 45555544 32 788999999999999999997632111
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
-.+-.....++...+.++.|.+|+...+|++++++++ .+.+.....+ . ...+.|.
T Consensus 237 G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~~~~--~~~~~~~~~~-~----------------------t~~~~p~ 291 (408)
T PRK04612 237 GTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAGPKV--AETMQFGAHG-T----------------------TFGGNPL 291 (408)
T ss_pred CchhhhhhcCCCCCEEEEcchhcCCCceEEEEECHHH--HhhhcCCCcC-C----------------------CCCCCHH
Confidence 1111100113333344556999865568999988877 3333221100 0 0123333
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETD 437 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~ 437 (609)
...++.+.+... + .+.+.++.+++.+++.+.|+++. ...+++.. ..+..++.+.+.+ ..
T Consensus 292 ~~aaa~a~L~~~--~---~~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~v-rg~Gl~~~i~~~~-~~------------- 351 (408)
T PRK04612 292 AAAVARVALRKL--A---SPQIAANVARQSAALRAGLEALNAEFGVFAQV-RGRGLMLGAVLAP-AH------------- 351 (408)
T ss_pred HHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHHHHhhCCCeeee-eccceEEEEEecC-ch-------------
Confidence 334444444443 2 23456667777777777765431 11122111 0122333443332 10
Q ss_pred CCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 038499 438 KPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEA 517 (609)
Q Consensus 438 ~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~a 517 (609)
.-....+.+.+.+ .||.+.+. .++.+|+.+++..|++|+++++++
T Consensus 352 -~~~a~~i~~~l~~-~Gvlv~~~---------------------------------g~~~lRl~Ppl~it~eeid~~l~~ 396 (408)
T PRK04612 352 -AGQAGAILDLAAE-HGLLLLQA---------------------------------GPDVLRFVPALNLTDAELADGLAR 396 (408)
T ss_pred -hhHHHHHHHHHHH-CCeEEeeC---------------------------------CCCEEEEcCCccCCHHHHHHHHHH
Confidence 0124567777765 59988621 136899999999999999999999
Q ss_pred HHHHHHh
Q 038499 518 LEFIAIY 524 (609)
Q Consensus 518 l~~v~~~ 524 (609)
|++++..
T Consensus 397 l~~~l~~ 403 (408)
T PRK04612 397 LRLALAD 403 (408)
T ss_pred HHHHHHH
Confidence 9998865
|
|
| >PRK08088 4-aminobutyrate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.3e-12 Score=137.70 Aligned_cols=357 Identities=12% Similarity=0.073 Sum_probs=188.5
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-.++.|.+++.+++... ...... ... .....++.+.+.+..+.+
T Consensus 30 ~~G~~l~d~dG~---~~lD~~~g~~~~~lGh~~~~i~~a~~~~~~~~-~~~~~~--~~~---~~~~~~la~~l~~~~~~~ 100 (425)
T PRK08088 30 AENCRVWDVEGR---EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL-SHTCFQ--VLA---YEPYLELCEKMNQKVPGD 100 (425)
T ss_pred eeeCEEEeCCCC---EEEEcCCchhhcCCCCCCHHHHHHHHHHHhhC-CCcccc--ccC---CHHHHHHHHHHHHhCCCC
Confidence 334445455553 48887654 556888999998888653 111110 000 122346666777777654
Q ss_pred CCCcEEEeCChHHH---HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc-----------
Q 038499 138 QEDAMIFCGSGTTA---AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA----------- 203 (609)
Q Consensus 138 ~~~~vift~sGtta---al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~----------- 203 (609)
..+.++|+.||+++ |++++... .++++ +|.+.+..|..........+-
T Consensus 101 ~~~~~~f~~sGsea~e~Alklar~~----------------~~r~~--iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~ 162 (425)
T PRK08088 101 FAKKTLLVTTGSEAVENAVKIARAA----------------TKRSG--VIAFTGAYHGRTHYTLALTGKVNPYSAGMGLM 162 (425)
T ss_pred CCCEEEEeCCcHHHHHHHHHHHHHH----------------hCCCe--EEEECCccCCccHHHHHhhCCCCccccCCCCC
Confidence 32378888899984 44442211 12233 555554444444333322110
Q ss_pred --eEEE--EecCCCCCCC----HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecc
Q 038499 204 --EVVE--IGLDDDGLLD----IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 204 --~vv~--v~~~~~g~ld----~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A 271 (609)
.+.. +|.+.++ ++ +++|++.+....+.+++.++++.......|.+.+ +++|.++|++||+++|+|++
T Consensus 163 ~~~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev 241 (425)
T PRK08088 163 PGHVYRALYPCPLHG-VSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEV 241 (425)
T ss_pred CCCcEEcCCCccccC-ccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 0111 2222221 22 5568887752112246778888877777787766 78899999999999999999
Q ss_pred ccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccc
Q 038499 272 ASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEER 351 (609)
Q Consensus 272 ~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r 351 (609)
++.....-.+......+.+.-+.|++|.+++...+|++++++++ ++.+..... .
T Consensus 242 ~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~rig~v~~~~~~--~~~~~~~~~------------------------~ 295 (425)
T PRK08088 242 QTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGFPLAGVTGRAEV--MDAIAPGGL------------------------G 295 (425)
T ss_pred ccCCCcCcchhHHhhcCCCCCEEEEeccccCCCcceeeEecHHH--HhhcCCCCC------------------------C
Confidence 77421111111110012222246667999855568999999888 444432110 0
Q ss_pred ccCCChhHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh----CCCCceEEeCCCCCCCcceEEEEeccCCCCC
Q 038499 352 ESGGTPQVIQM-IRAALAFWVKEYIGHEVIKKQEETYIERALERL----LPNQNIKILGNTSTKRQAILSFNIHSSTINS 426 (609)
Q Consensus 352 ~~~gtp~i~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L----~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~ 426 (609)
...+.+.+.+. +.+.+... ..+.+.++.+++.+++.+.| ...|.+.-+.. ...++++.+.. +...
T Consensus 296 ~t~~~~~~~~~a~~~~l~~~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g----~G~~~~l~l~~-~~~~ 365 (425)
T PRK08088 296 GTYAGNPIACAAALAVLKVF-----EQENLLQKANALGEKLKDGLLAIAEKHPEIGDVRG----LGAMIAIELFE-DGDH 365 (425)
T ss_pred CCCCcCHHHHHHHHHHHHHH-----HhcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEec----cceEEEEEEec-CCCC
Confidence 11122233222 22222221 12233333344444444433 33444322211 13344444422 1100
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCC
Q 038499 427 SLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYM 506 (609)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~ 506 (609)
..........+.+.+.+ .||.+.++.. .++.+|++++..+
T Consensus 366 --------~~p~~~~~~~l~~~~~~-~Gv~~~~~~~-------------------------------~~~~iRl~~~~~~ 405 (425)
T PRK08088 366 --------SKPNAKLTAQIVARARD-KGLILLSCGP-------------------------------YYNVLRILVPLTI 405 (425)
T ss_pred --------CCCCHHHHHHHHHHHHh-CCCEEecCCC-------------------------------CCCEEEEECCCCc
Confidence 00001224567777765 5988763211 1378999999899
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 038499 507 SNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 507 t~eeid~ll~al~~v~~~ 524 (609)
|++|++..+++|+++++.
T Consensus 406 t~~ei~~~i~~l~~~l~~ 423 (425)
T PRK08088 406 EDAQIRQGLEIIAQCFDE 423 (425)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999999999998864
|
|
| >PRK09792 4-aminobutyrate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=4.1e-12 Score=137.42 Aligned_cols=356 Identities=15% Similarity=0.146 Sum_probs=196.5
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++... ..++. .....+...++.+.+.+.....
T Consensus 29 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~-~~~~~-----~~~~~~~~~~la~~l~~~~p~~ 99 (421)
T PRK09792 29 AENATLKDVEGN---EYIDFAAGIAVLNTGHRHPDLVAAVEQQLQQF-THTAY-----QIVPYESYVTLAEKINALAPVS 99 (421)
T ss_pred ccccEEEeCCCC---EEEEccCchhhhcCCCCCHHHHHHHHHHHHhc-cCccc-----CccCCHHHHHHHHHHHHhCCCC
Confidence 455666666665 38998654 667889999999888653 11111 1111233455666677776532
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcC-------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSL-------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G-------------~ 203 (609)
..+.+.|+.||+.+ +...+++.- .. .|. +.|+.-...||+... .....+ .
T Consensus 100 ~~~~~~f~~sGseA-~e~AlklAr-------------~~-tgr-~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~ 163 (421)
T PRK09792 100 GQAKTAFFTTGAEA-VENAVKIAR-------------AH-TGR-PGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPG 163 (421)
T ss_pred CCceEEEeCChHHH-HHHHHHHHH-------------Hh-cCC-CeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCC
Confidence 22378898888886 333322210 01 232 256665555555432 221111 1
Q ss_pred eEEEEecCC--CCC---CCHHHHHHHHhhhccCCCceEEEEecccCcccccc-C---HHHHHHHHHHhCCeEEEeccccC
Q 038499 204 EVVEIGLDD--DGL---LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYS-D---TRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 204 ~vv~v~~~~--~g~---ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~-d---l~~I~~la~~~g~~vivD~A~~~ 274 (609)
.+..++... ++. -+++++++.+.+....+++.+++++..++++|... | +++|.++|++||+++|+|+++..
T Consensus 164 ~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg 243 (421)
T PRK09792 164 SVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSG 243 (421)
T ss_pred CcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 133344322 211 13477787776311124678999999999999875 6 78899999999999999999764
Q ss_pred C-ccc--ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccc
Q 038499 275 P-YVE--IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEER 351 (609)
Q Consensus 275 ~-~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r 351 (609)
- ... ..+... ....|+++ +.|.+++...+|++++++++ .+.+.+...+ +
T Consensus 244 ~gr~G~~~a~~~~-~~~pDi~t--~gK~l~~G~pigav~~~~~i--~~~~~~~~~~-~---------------------- 295 (421)
T PRK09792 244 FARTGKLFAMDHY-ADKPDLMT--MAKSLAGGMPLSGVVGNANI--MDAPAPGGLG-G---------------------- 295 (421)
T ss_pred CCCCCchhHHHhc-CCCCcEEE--eehhhcCCCceEEEEEcHHH--HhccCCCCcC-C----------------------
Confidence 2 211 111111 12457654 46999866668999999888 3343221110 0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCceEEeCCCCCCCcceEEEEeccCCCCCc
Q 038499 352 ESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNIKILGNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 352 ~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
...|.|-......+.+.++. + +.+.++.+++.+++.+.|+. +|.+ ... ..+..++++.+.. +..
T Consensus 296 T~~gnpl~~aaa~a~l~~l~-~----~~~~~~~~~~g~~l~~~l~~l~~~~p~v---~~v-rG~Gl~~~ie~~~-~~~-- 363 (421)
T PRK09792 296 TYAGNPLAVAAAHAVLNIID-K----ESLCERANQLGQRLKNTLIDAKESVPAI---AAV-RGLGSMIAAEFND-PQT-- 363 (421)
T ss_pred CCCCCHHHHHHHHHHHHHHH-h----hhHHHHHHHHHHHHHHHHHHHHHhCCCc---cee-cccceEEEEEecC-Ccc--
Confidence 01233333333344454442 1 23444555555555555543 4432 110 0122334444333 110
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC
Q 038499 428 LGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS 507 (609)
Q Consensus 428 ~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t 507 (609)
..........+...+.+ .||.+.+ + ++ .++.+|+.+++..+
T Consensus 364 -------~~~~~~~~~~l~~~~~~-~Gv~i~~---~-g~---------------------------~~~~irl~P~l~i~ 404 (421)
T PRK09792 364 -------GEPSAAIAQKIQQRALA-QGLLLLT---C-GA---------------------------YGNVIRFLYPLTIP 404 (421)
T ss_pred -------CCcchHHHHHHHHHHHH-CCcEEee---c-CC---------------------------CCCEEEEeCCCcCC
Confidence 00000124556666655 5998852 1 11 13789999998899
Q ss_pred HHHHHHHHHHHHHHHH
Q 038499 508 NEEFEFTLEALEFIAI 523 (609)
Q Consensus 508 ~eeid~ll~al~~v~~ 523 (609)
++|+++++++|.+++.
T Consensus 405 ~~ei~~~~~~l~~~l~ 420 (421)
T PRK09792 405 DAQFDAAMKILQDALS 420 (421)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999998874
|
|
| >PRK07495 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1e-11 Score=134.27 Aligned_cols=356 Identities=17% Similarity=0.145 Sum_probs=196.0
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+..|++ |+|..++ |-..+.|.+++.+++..... ... .....+...++.+.+.+.+...
T Consensus 29 ~~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~-~~~-----~~~~~~~~~~la~~l~~~~p~~ 99 (425)
T PRK07495 29 AENAEIWDKEGRR---YIDFAAGIAVVNTGHRHPRVIAAVKAQLDRFTH-TCH-----QVVPYENYVRLAERLNALVPGD 99 (425)
T ss_pred eeecEEEeCCCCE---EEEccccHHhhccCCCCHHHHHHHHHHHhhccC-ccc-----CccCCHHHHHHHHHHHHhCCCC
Confidence 5556677777753 9997654 66788999999998865321 110 0112334556777777777543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcC-------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSL-------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G-------------~ 203 (609)
..+.+.|+.|||.+ +...+++-- .. .|. +.|+.-...||.... .....+ .
T Consensus 100 ~~~~v~f~~SGseA-~e~AlklAr-------------~~-tgr-~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~ 163 (425)
T PRK07495 100 FAKKTIFVTTGAEA-VENAVKIAR-------------AA-TGR-SAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMP 163 (425)
T ss_pred CCCEEEECCchHHH-HHHHHHHHH-------------Hh-hCC-CeEEEECCCcCCccHHHhhhcCCCcccccCCCCCCC
Confidence 22379999888886 333322210 01 222 246655555554432 211111 1
Q ss_pred eEEEEecCCC-CCCC----HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC
Q 038499 204 EVVEIGLDDD-GLLD----IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 204 ~vv~v~~~~~-g~ld----~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~ 274 (609)
.++.+|.+.+ ..++ ++++++.+.+....+++.++++..+...+|.+.+ +++|.++|++||+++|+|+++..
T Consensus 164 ~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~tG 243 (425)
T PRK07495 164 DVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGILLIADEVQTG 243 (425)
T ss_pred CeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhc
Confidence 3444554321 1122 4455666642112246778888887777886643 77899999999999999999763
Q ss_pred CcccccCCCCCCC--CccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 275 PYVEIDVRSGQTD--GYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 275 ~~~~id~~~~~~~--~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
-...-.+-..... .+|++++ .|.+++...+|++++++++ .+.+.+...+ . .
T Consensus 244 ~gr~G~~~a~~~~gv~pDi~tl--sK~l~~G~pigav~~~~~i--~~~~~~~~~~-~----------------------T 296 (425)
T PRK07495 244 FARTGKLFAMEHHEVAADLTTM--AKGLAGGFPLAAVTGRAEI--MDAPGPGGLG-G----------------------T 296 (425)
T ss_pred CCcCCCceeecccCCCCCEEee--hhhhcCCccceEEEEcHHH--HhccCCCCcC-C----------------------C
Confidence 2111111111111 3465554 6999865568999999888 3443321110 0 0
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCce-EEeCCCCCCCcceEEEEeccCCCCCc
Q 038499 353 SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNI-KILGNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 353 ~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i-~v~~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
..+.|.......++++++ +. +.+.++.+++.+++.++|++ .|.+ ++.+. .-++.+.+.+ ..
T Consensus 297 ~~~~pl~~aaa~a~l~~l--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG~-----Gl~~~iel~~-~~--- 362 (425)
T PRK07495 297 YGGNPLGIAAAHAVLDVI--EE---EDLCERANQLGNRLKQRLASLRETVPEIADIRGP-----GFMNAVEFND-AD--- 362 (425)
T ss_pred CCCCHHHHHHHHHHHHHH--Hh---chHHHHHHHHHHHHHHHHHHHHhhCCCeeeeecC-----ceEEEEEEec-CC---
Confidence 123333333334555544 21 23445555566666555543 3432 22222 2233333322 11
Q ss_pred CCCCCCCCCCCC--CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC
Q 038499 428 LGENTKTETDKP--LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY 505 (609)
Q Consensus 428 ~~~~~~~~~~~~--l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~ 505 (609)
.... -....+.+.+.+ .|+.++.. . + ..+.+||..++.
T Consensus 363 --------~~~~~~~~~~~~~~~~~~-~Gvl~~~~---g-~---------------------------~~~~~r~~Ppl~ 402 (425)
T PRK07495 363 --------SGLPSAEFANRVRLKALE-KGLILLTC---G-V---------------------------HGNVIRFLAPIT 402 (425)
T ss_pred --------CCCccHHHHHHHHHHHHH-CCeEEeec---C-C---------------------------CCCEEEEeCCCc
Confidence 0000 013456666655 59887521 1 1 136899999999
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 038499 506 MSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 506 ~t~eeid~ll~al~~v~~~~ 525 (609)
.|++|+++++++|+++++..
T Consensus 403 it~~~id~~~~~l~~~l~~~ 422 (425)
T PRK07495 403 IQDDVFAEALDILEASILEA 422 (425)
T ss_pred cCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988653
|
|
| >KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=132.31 Aligned_cols=290 Identities=17% Similarity=0.134 Sum_probs=186.4
Q ss_pred HHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEE
Q 038499 128 NYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVE 207 (609)
Q Consensus 128 ~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~ 207 (609)
..++.--+..++ .|.. |-|+.+.|..+++... .||.. .|+..|+.|..+...+...+++|+.
T Consensus 76 ~a~~~dkpLt~d-nic~-GvGsDE~ID~iiR~~c---------------~PGke-KIl~cPPtysMY~v~A~iNd~eVvk 137 (375)
T KOG0633|consen 76 DALAQDKPLTSD-NICV-GVGSDELIDLIIRCVC---------------DPGKE-KILDCPPTYSMYVVDAAINDAEVVK 137 (375)
T ss_pred hhcccCCCCCcc-ceEE-ecCcHHHHHHHHhhee---------------cCCcc-ceeecCCcceeEEEEeecCCceEEE
Confidence 333333455554 6666 5999999999988764 67844 5888888887766666778999999
Q ss_pred EecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHh-CCeEEEeccccCCc-ccccCCCCC
Q 038499 208 IGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY-GGFACFDFAASGPY-VEIDVRSGQ 285 (609)
Q Consensus 208 v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~-g~~vivD~A~~~~~-~~id~~~~~ 285 (609)
+|.++++.++.+++.+.++.+ ..+|++++++|.||||.+...+.|.++++.- +.++++|+|+--.. +.-.| ++.
T Consensus 138 vpl~pdF~lnvdai~evl~~d---s~iK~~F~tSPgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~-~lV 213 (375)
T KOG0633|consen 138 VPLNPDFSLNVDAIAEVLELD---SKIKCIFLTSPGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRM-KLV 213 (375)
T ss_pred ecCCCCccccHHHHHHHHhcc---ccceEEEEcCCCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccc-hHh
Confidence 999999999999999999853 4789999999999999999999999988764 79999999943110 11111 111
Q ss_pred CCCccE-EEEcCCCCCCCCC-CcEEEEEechhhc-cCCC-CCCccCCCceEeecccccccccccccccccccCCChhHHH
Q 038499 286 TDGYDA-IFLSTHKFLGGPG-SPGILLMTKALYQ-LGSF-PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ 361 (609)
Q Consensus 286 ~~~~D~-v~~S~hK~lggp~-g~G~L~~~~~~~~-l~~~-~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~ 361 (609)
...... +.-+++|-+|-.+ .+|+-+.+..+.+ +.++ .|+ |+..
T Consensus 214 ~kYpNLivlqTlSKsfGLAGiRvG~~~~~~~ia~iln~~KaPY---------------------------------NiS~ 260 (375)
T KOG0633|consen 214 KKYPNLIVLQTLSKSFGLAGIRVGYGAFPLSIAEILNRAKAPY---------------------------------NISV 260 (375)
T ss_pred HhCCceeehhhhhhhcCcceeEeecccccHHHHHHHHhccCCc---------------------------------cccc
Confidence 112333 4447889887322 2788887777632 1111 111 1111
Q ss_pred H-HHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC
Q 038499 362 M-IRAALAFWV-KEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK 438 (609)
Q Consensus 362 ~-~~aal~~~~-~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (609)
. -.+|++..- .+..-++..+..+.+.+.++.+.|.++|++. +.++ ...+++...+.+ +. .
T Consensus 261 ~~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg---~daNFiLi~v~~-~~-------------n 323 (375)
T KOG0633|consen 261 AGSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGG---SDANFILIEVTG-GD-------------N 323 (375)
T ss_pred hhHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCc---ccccEEEEEEcC-CC-------------c
Confidence 1 122333221 1112345566666667788889999888775 2233 133455555554 21 1
Q ss_pred CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 439 PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 439 ~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
.+ ...+...+.-+.|+.+|- ++... + -.|++||+.+ |+||.+.+++.+
T Consensus 324 ~~-akkly~q~at~~gVvVRf-------rgse~-~--------------------c~G~lRitvG---t~EentvL~k~~ 371 (375)
T KOG0633|consen 324 GM-AKKLYKQDATKMGVVVRF-------RGSEE-G--------------------CKGYLRITVG---TPEENTVLMKCL 371 (375)
T ss_pred HH-HHHHHHHHHHhcceEEEE-------cCCcc-c--------------------cceeEEEEcC---CcccchHHHHHH
Confidence 12 233444444567999981 11110 0 2589999999 999999999999
Q ss_pred HHH
Q 038499 519 EFI 521 (609)
Q Consensus 519 ~~v 521 (609)
+.+
T Consensus 372 K~~ 374 (375)
T KOG0633|consen 372 KQF 374 (375)
T ss_pred Hhh
Confidence 875
|
|
| >PRK06058 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.5e-12 Score=135.87 Aligned_cols=356 Identities=15% Similarity=0.107 Sum_probs=192.5
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++.+. ..... .....+...++.+++.+.+...
T Consensus 45 ~~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~-~~~~~-----~~~~~~~~~~la~~l~~~~p~~ 115 (443)
T PRK06058 45 AGGGIVEDVDGN---RLIDLGSGIAVTSVGNSAPRVVEAVREQVARF-THTCF-----MVTPYEGYVAVAEQLNRLTPGD 115 (443)
T ss_pred eeeeEEEeCCCC---EEEEcCcchhhhccCCCCHHHHHHHHHHHHhc-cCccc-----cccCCHHHHHHHHHHHHhCCCC
Confidence 344555555554 48998653 556789999999988653 11111 1112344556777788877543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC-------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL-------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G-------------~ 203 (609)
..+.+.|+.+|+.+ +...+++-- .. .|.. .|+.-...||+.. ..+...+ .
T Consensus 116 ~~~~v~f~~sGseA-~e~AlklAr-------------~~-tgr~-~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~ 179 (443)
T PRK06058 116 HEKRSALFNSGAEA-VENAVKIAR-------------SY-TGRQ-AVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAP 179 (443)
T ss_pred CCCEEEEeCCcHHH-HHHHHHHHH-------------Hh-hCCC-eEEEECCCcCcChHHHHhhcCCCcccccccCCCCC
Confidence 22378999889775 333333210 01 1222 4665555555543 2222111 1
Q ss_pred eEEEEecCCCC------CCC--------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCe
Q 038499 204 EVVEIGLDDDG------LLD--------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGF 265 (609)
Q Consensus 204 ~vv~v~~~~~g------~ld--------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~ 265 (609)
.+..++..... ..+ ++.+++.+. .+++..+++...+...|.+.| +++|.++|++||++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~iAavi~EPi~g~gG~~~p~~~yl~~lr~lc~~~gil 255 (443)
T PRK06058 180 EVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVG----ADNLAAVIIEPIQGEGGFIVPAEGFLPALLEWCRENGVV 255 (443)
T ss_pred CceEcCCCcccccccccccchHHHHHHHHHHHHHhhC----CCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 22333321110 011 122233332 146778888877777787765 78999999999999
Q ss_pred EEEeccccCC-cccc--cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccc
Q 038499 266 ACFDFAASGP-YVEI--DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342 (609)
Q Consensus 266 vivD~A~~~~-~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (609)
+|+|+++.+. ...- -....+ -..|+++++ |.+||...+|++++++++ .+.+.+...+ ++
T Consensus 256 lI~DEV~tGfgRtG~~fa~~~~g-v~PDiv~~g--K~l~~G~Pi~av~~~~~i--~~~~~~~~~~-~T------------ 317 (443)
T PRK06058 256 FIADEVQTGFARTGAWFACEHEG-IVPDLITTA--KGIAGGLPLSAVTGRAEI--MDAPHPGGLG-GT------------ 317 (443)
T ss_pred EEEeccccCCCcChhhhHHHhcC-CCCCEEEEc--ccccCCCccEEEEEcHHH--HhhccCCCCC-CC------------
Confidence 9999997632 1110 001110 135888885 999865568999999988 3444322111 11
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcceEEEEecc
Q 038499 343 LYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAILSFNIHS 421 (609)
Q Consensus 343 ~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~~~f~~~~ 421 (609)
..|.|-......+++... + .+.+.++.+++.+++.+.|+++. ...+++.. .....++.+.+..
T Consensus 318 ----------~~gnpl~~aaa~a~L~~~--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rg~G~~~~i~~~~ 381 (443)
T PRK06058 318 ----------YGGNPVACAAALAAIETI--E---EDDLVARARQIEALMTDRLRALAAEDDRIGDV-RGRGAMIAIELVK 381 (443)
T ss_pred ----------CCCCHHHHHHHHHHHHHH--H---HcCHHHHHHHHHHHHHHHHHHHHhhCCcEEee-eccceEEEEEEec
Confidence 123333333334444433 1 23455666666677777665431 11111111 0123444444433
Q ss_pred CCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEe
Q 038499 422 STINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRIS 501 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls 501 (609)
+.. ..........+.+.+.+ .||.+.++. + .++++|+.
T Consensus 382 -~~~---------~~~~~~~~~~l~~~~~~-~Gv~~~~~~----~---------------------------~~~~lr~~ 419 (443)
T PRK06058 382 -PGT---------TEPDAELTKALAAAAHA-AGVIVLTCG----T---------------------------YGNVIRLL 419 (443)
T ss_pred -CCC---------CCCcHHHHHHHHHHHHH-CCeEEeccC----C---------------------------CCCEEEEE
Confidence 100 00000012345555555 599887431 1 02689999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 038499 502 FPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 502 ~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++..|++|+++++++|++++++
T Consensus 420 Ppl~~t~~~i~~~~~~l~~~l~~ 442 (443)
T PRK06058 420 PPLVIGDELLREGLDVLEAALAD 442 (443)
T ss_pred CCCccCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998764
|
|
| >PRK06777 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-12 Score=134.89 Aligned_cols=354 Identities=14% Similarity=0.096 Sum_probs=195.9
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++.+. ...... ........++.+.+.+.+...
T Consensus 29 ~~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~-~~~~~~-----~~~~~~~~~la~~l~~~~p~~ 99 (421)
T PRK06777 29 AENATLWDVEGR---EYIDFAAGIAVLNTGHRHPKVVAAVRQQLDQF-THTAYQ-----IVPYASYVTLAERINALAPID 99 (421)
T ss_pred eecCEEEeCCCC---EEEEcccCHHhhccCCCCHHHHHHHHHHHhhc-cccccc-----ccCChHHHHHHHHHHHhCCCC
Confidence 445666666664 48997654 567788999999888753 111110 011223445667777776532
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-HHHcCc-------------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-WRQSLA------------- 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~~G~------------- 203 (609)
..+.+.|+.|||.+ +...+++-- .. .|. +.|+.-...||+.... ....+-
T Consensus 100 ~~~~~~f~~sGseA-~e~AlklAr-------------~~-tgr-~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~ 163 (421)
T PRK06777 100 GPAKTAFFTTGAEA-VENAVKIAR-------------AY-TGR-PGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPG 163 (421)
T ss_pred CCceEEEeCCcHHH-HHHHHHHHH-------------Hh-hCC-CeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCC
Confidence 22378999888886 333322210 01 222 2466555555554322 221121
Q ss_pred eEEEEecCCC--C---CCCHHHHHHHHhhhccCCCceEEEEecccCccccc-cC---HHHHHHHHHHhCCeEEEeccccC
Q 038499 204 EVVEIGLDDD--G---LLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY-SD---TRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 204 ~vv~v~~~~~--g---~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~-~d---l~~I~~la~~~g~~vivD~A~~~ 274 (609)
.+..++.... + ..+++++++.+.+....+++..+++..+.+..|.. .| +++|.++|++||+++|+|+++..
T Consensus 164 ~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg 243 (421)
T PRK06777 164 SIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQTG 243 (421)
T ss_pred CcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence 1222222211 1 12366778777532122467788899888888965 44 78999999999999999999763
Q ss_pred C-cccc--cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccc
Q 038499 275 P-YVEI--DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEER 351 (609)
Q Consensus 275 ~-~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r 351 (609)
- ...- ..... ....|+++ +.|.+++...+|++++++++ .+.+.+...+ +
T Consensus 244 ~gr~g~~~~~~~~-~~~pDiv~--~sK~l~~G~pigav~~~~~i--~~~~~~~~~~-~---------------------- 295 (421)
T PRK06777 244 FARTGKLFAMEYY-DVKPDLIT--MAKSLGGGMPISAVVGRAEV--MDAPAPGGLG-G---------------------- 295 (421)
T ss_pred CccCCchhhhhhc-CCCCCEEe--eehhhcCCCceEEEEEcHHH--HhccCCCCCC-C----------------------
Confidence 2 2111 11111 01357664 57999855558999999888 3444322110 0
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----CceEEeCCCCCCCcceEEEEeccCCCCCc
Q 038499 352 ESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN----QNIKILGNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 352 ~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----p~i~v~~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
...+.|.......++++.. + .+.+.++.+++.+++.+.|+++ |.+.-+.+ ...++.+.+.. +.
T Consensus 296 T~~~~p~~~aaa~a~L~~~--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg----~G~~~~i~~~~-~~--- 362 (421)
T PRK06777 296 TYAGNPLAVAAALAVLDVI--A---EEKLCQRALILGAHLVEVLEKAKASCPAIVDIRA----RGSMVAVEFND-PQ--- 362 (421)
T ss_pred CCCcCHHHHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecC----ceEEEEEEEec-Cc---
Confidence 0123333333334444433 2 2455666777777777777553 43322222 23344332322 10
Q ss_pred CCCCCCCCCCCC-C-ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC
Q 038499 428 LGENTKTETDKP-L-HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY 505 (609)
Q Consensus 428 ~~~~~~~~~~~~-l-~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~ 505 (609)
.+.. . -...+.+.+.+ .||.+.++..+ .+++||.+++.
T Consensus 363 --------~~~~~~~~~~~l~~~~~~-~Gv~i~~~~~~-------------------------------g~~lr~~ppl~ 402 (421)
T PRK06777 363 --------TGKPSPEFTRQYQRQALE-EGLLLLSCGVH-------------------------------GNVIRFLYPLT 402 (421)
T ss_pred --------cCCccHHHHHHHHHHHHh-CCeEEeecCCC-------------------------------CCEEEEeCCCC
Confidence 0000 0 12334444444 69998754211 26899999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q 038499 506 MSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 506 ~t~eeid~ll~al~~v~~ 523 (609)
.|++++++++++|++.+.
T Consensus 403 i~~~~i~~~~~~l~~~l~ 420 (421)
T PRK06777 403 IPDAQFSKALNILTRLLA 420 (421)
T ss_pred CCHHHHHHHHHHHHHHHh
Confidence 999999999999988763
|
|
| >PLN02760 4-aminobutyrate:pyruvate transaminase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.4e-12 Score=141.54 Aligned_cols=372 Identities=14% Similarity=0.068 Sum_probs=198.2
Q ss_pred CCCccccCCCCCCceEEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..+ .|-..+.|.+++.+++.... ..+.. . ...++...++.+.|.+.+...
T Consensus 78 ~~G~~l~D~dG~---~ylD~~sg~~~~~lGh~hp~v~~Av~~ql~~~~-~~~~~---~-~~~~~~~~~lae~L~~~~~~~ 149 (504)
T PLN02760 78 SEGSYVYDINGK---KYLDALAGLWCTALGGSEPRLVAAATEQLNKLP-FYHSF---W-NRTTKPSLDLAKELLEMFTAR 149 (504)
T ss_pred eeeeEEEECCCC---EEEEcCcCHHhcccCCCCHHHHHHHHHHHhhcc-ceecc---c-ccCcHHHHHHHHHHHhhcCCC
Confidence 455666666664 3888654 35667899999999886531 11110 0 112344566777777775422
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCce------------E
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAE------------V 205 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~------------v 205 (609)
.-+.+.|+.||+++... ++++.- ... ...-.++.+.+|......|.+........|.. +
T Consensus 150 ~~~~v~f~~SGsEA~e~-AlKlAr-~~~-------~~~g~~~r~~iI~~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~ 220 (504)
T PLN02760 150 KMGKVFFTNSGSEANDT-QVKLVW-YYN-------NALGRPNKKKFIARSKSYHGSTLISASLSGLPALHQKFDLPAPFV 220 (504)
T ss_pred CCCEEEEeCChHHHHHH-HHHHHH-HHH-------HhcCCCCCcEEEEECCCccCChHhhhhccCChhhccCCCCCCCCc
Confidence 22378999888886333 333210 000 00002333324444445555544343323321 2
Q ss_pred EEEecCCC------C-------CCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 206 VEIGLDDD------G-------LLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 206 v~v~~~~~------g-------~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
..++.... + ....++|++.+.+ ...+++..+++..+....|.+.| +++|.++|++||+++|+
T Consensus 221 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~-~~~~~iAAvI~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~ 299 (504)
T PLN02760 221 LHTDCPHYWRFHLPGETEEEFSTRLADNLENLILK-EGPETIAAFIAEPVMGAGGVIPPPATYFEKIQAVLKKYDILFIA 299 (504)
T ss_pred EEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHh-cCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 22221110 0 0112457776642 11245778889988888899988 99999999999999999
Q ss_pred ecccc-CCccccc--CCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 269 DFAAS-GPYVEID--VRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 269 D~A~~-~~~~~id--~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
|+++. +|-...- ..... -.+|+++++ |.+||.. .+|.+++++++ .+.+.+.....+...
T Consensus 300 DEV~TGfGRtG~~~a~e~~g-v~PDivtlg--K~lggG~~PigAv~~~~~i--~d~~~~~~~~~~~~~------------ 362 (504)
T PLN02760 300 DEVICAFGRLGTMFGCDKYN-IKPDLVSLA--KALSSAYMPIGAVLVSPEI--SDVIHSQSNKLGSFA------------ 362 (504)
T ss_pred cchhhCCcccchhhHHHhcC-CCCcEEEec--ccccCCccccceEeecHHH--HhhhhcccccccCcc------------
Confidence 99984 4332210 01110 135877765 9997642 46888899888 333321100000000
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCC
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~ 424 (609)
......|.|...+...+.++... .+.+.++.+++.+++++.|+++....+++.. .....++.+.+.. ..
T Consensus 363 ----h~~T~~gnPl~~Aaala~Le~i~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~v-rG~Gl~~gie~~~-~~ 431 (504)
T PLN02760 363 ----HGFTYSGHPVSCAVALEALKIYK-----ERNIPEHVNKIAPRFQDGIKAFSGSPIIGEI-RGTGLILGTEFVD-NK 431 (504)
T ss_pred ----cCCCCCCCHHHHHHHHHHHHHHH-----hCCHHHHHHHHHHHHHHHHHHHhcCCCeeeE-EeCceEEEEEEec-CC
Confidence 00011234444444455555442 1245566667777777766543211111110 0122233333322 11
Q ss_pred CCcCCCCCCCCCCCCC----ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEE
Q 038499 425 NSSLGENTKTETDKPL----HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRI 500 (609)
Q Consensus 425 ~~~~~~~~~~~~~~~l----~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRl 500 (609)
. .....- -...+.+.+.+ .||.+++. ...+|+
T Consensus 432 ~---------~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~----------------------------------g~~lrl 467 (504)
T PLN02760 432 S---------PNDPFPAEWGVGAYFGAECKK-RGMLVRVA----------------------------------GDNIMM 467 (504)
T ss_pred c---------ccccccchhHHHHHHHHHHHh-CCcEEEec----------------------------------CCEEEE
Confidence 0 000000 03346666655 59887621 246899
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 501 SFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 501 s~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
++++.+|++|++++++++++++...
T Consensus 468 ~Ppl~it~eeid~~~~~l~~al~~~ 492 (504)
T PLN02760 468 SPPLIITPEEVDELISIYGKALKAT 492 (504)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999988664
|
|
| >COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-11 Score=131.81 Aligned_cols=352 Identities=17% Similarity=0.143 Sum_probs=206.6
Q ss_pred ceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 038499 77 RLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTT 150 (609)
Q Consensus 77 ~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtt 150 (609)
...|+|..+. |-..+.|.+++.+++..+. .+++... .++...++.+++.+.+..+..+.++|+.+||.
T Consensus 55 G~~ylDf~sgi~v~~~GH~hP~Vv~Av~~q~~~~~-h~~~~~~-----~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGae 128 (447)
T COG0160 55 GNEYLDFLSGIAVLNLGHNHPRVVEAVKRQLAKLN-HTHTRDL-----YYEPYVELAEKLTALAPGSGLKKVFFGNSGAE 128 (447)
T ss_pred CCEEEEcccCcchhccCCCCHHHHHHHHHHHHHhh-cccCCcc-----cchhHHHHHHHHHHhCCcccCCeEEecCCcHH
Confidence 3469998873 5567899999999887652 2333211 12455667777777777643347888888888
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHc-------------CceEEEEecCCC--C
Q 038499 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQS-------------LAEVVEIGLDDD--G 214 (609)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~-------------G~~vv~v~~~~~--g 214 (609)
+ +...+++-- .-.|.. .|+.-...||.. ..+.... ...|..+|.... +
T Consensus 129 A-~E~AiKiAr--------------~~Tgr~-~viaf~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~ 192 (447)
T COG0160 129 A-VEAAIKIAR--------------AYTGRP-GVIAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRC 192 (447)
T ss_pred H-HHHHHHHHH--------------HHhCCC-cEEEECCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccC
Confidence 6 333333210 012222 355555555543 3333221 123666665431 1
Q ss_pred ----------CCCHHHHHHHHhhhc-cCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccc
Q 038499 215 ----------LLDIEALRSKLELYK-DAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 215 ----------~ld~e~L~~al~~~~-~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~i 279 (609)
.-..+.++..+.... ...++..+++..++...|.+.| ++++.++|++||+++|+|++|.+-..--
T Consensus 193 p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~EpIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG 272 (447)
T COG0160 193 PFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTG 272 (447)
T ss_pred cccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccc
Confidence 113344566554322 2235679999999999999977 7889999999999999999987532221
Q ss_pred cCCCCCCC--CccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCCh
Q 038499 280 DVRSGQTD--GYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP 357 (609)
Q Consensus 280 d~~~~~~~--~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp 357 (609)
.|-..+.. ..|+++++ |.+|+...+|.++.++++ .+ ..|...++. ..|.|
T Consensus 273 ~~fa~E~~gv~PDivt~a--K~ig~G~Pl~avv~r~ei--~~-~~~g~~~~T-----------------------f~GNp 324 (447)
T COG0160 273 KMFAFEHFGVEPDIVTLA--KSLGGGLPLSAVVGRAEI--MD-WPPGGHGGT-----------------------FGGNP 324 (447)
T ss_pred cchhhhhcCCCCCEEEec--ccccCCCceeEEeccHHh--cc-cCCcccCCC-----------------------CCcCH
Confidence 22221111 46998887 999886668999999998 33 322221111 13444
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCC
Q 038499 358 QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTET 436 (609)
Q Consensus 358 ~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~ 436 (609)
--.+...+.++. +..+.+.++..++.++++++|.++. ...+++.. ...+.+...-...+.. + ..
T Consensus 325 va~Aaa~AvL~v-----ie~e~L~~~a~~~G~~l~~~L~~l~~~~~~IgdV--RG~Glm~giE~v~d~~------t--~~ 389 (447)
T COG0160 325 VACAAALAVLDV-----IEEENLLERAAELGEYLRDRLEELQEKHPLIGDV--RGLGLMIGVELVKDRD------T--KE 389 (447)
T ss_pred HHHHHHHHHHHH-----HHHccHHHHHHHHHHHHHHHHHHHHhhcCceecc--cccceEEEEEEecCCC------C--CC
Confidence 333333444442 2234677788888888888886531 22244442 2223333222210100 0 00
Q ss_pred CCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 038499 437 DKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLE 516 (609)
Q Consensus 437 ~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~ 516 (609)
-..-....++..+.+ .|+.+.+ |. + ..+.+||..+...|++++|.+++
T Consensus 390 p~~~~~~~i~~~~~~-~Glil~~---~G-~---------------------------~~nviRi~PPL~is~e~~d~~l~ 437 (447)
T COG0160 390 PDAELAAKIVARAFE-RGLLLLT---CG-P---------------------------HGNVLRILPPLTISDEELDEGLD 437 (447)
T ss_pred CCHHHHHHHHHHHHH-cCCEEec---cC-C---------------------------CCcEEEEeCCcccCHHHHHHHHH
Confidence 000124567777766 4876652 22 1 14899999999999999999999
Q ss_pred HHHHHHHhc
Q 038499 517 ALEFIAIYG 525 (609)
Q Consensus 517 al~~v~~~~ 525 (609)
+|++++...
T Consensus 438 il~~al~~~ 446 (447)
T COG0160 438 ILEEALKEA 446 (447)
T ss_pred HHHHHHHhh
Confidence 999988653
|
|
| >TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.1e-12 Score=137.91 Aligned_cols=349 Identities=17% Similarity=0.091 Sum_probs=190.1
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..+. |-.++.|.+++.+++.... +. . .......++++.|++.+...
T Consensus 37 ~~G~~l~d~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~--~----~~~~~~~~lae~l~~~~~~~ 104 (423)
T TIGR00713 37 GKGAYLYDVDGN---EYIDYVLSWGPLILGHAHPRVVEAVKEALERGT---SY--G----APTEAEILLAKEIISRVPSV 104 (423)
T ss_pred ccCCEEEeCCCC---EEEEccccccccccCCCCHHHHHHHHHHHHhCC---cC--C----CCCHHHHHHHHHHHHhCCcc
Confidence 444555555554 48887643 5667899999999886421 11 0 11234577888888888653
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-HHH--cCc-----------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-WRQ--SLA----------- 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~--~G~----------- 203 (609)
+.|+|+.+|+.+ +..++++.. .....+ .|++....||..... +.. .+.
T Consensus 105 --~~v~~~~sGseA-~e~Alk~ar-------------~~~gr~--~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~ 166 (423)
T TIGR00713 105 --EMVRFVNSGTEA-TMSAVRLAR-------------GYTGRD--KIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGV 166 (423)
T ss_pred --cEEEEeCCHHHH-HHHHHHHHH-------------HhhCCC--EEEEEcCCCCCChhhhhccccCcccccCCCCCCCC
Confidence 379999777775 433333210 011223 566666666664322 211 111
Q ss_pred ------eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc
Q 038499 204 ------EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 204 ------~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~ 273 (609)
.+..++. -|+++|++++++. .++++++++....+.+|.+.+ +++|.++|++||+++|+|+++.
T Consensus 167 ~~~~~~~~~~~~~-----~d~~~l~~~i~~~--~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~ 239 (423)
T TIGR00713 167 PEDFAKLTLVLPY-----NDLEALEEVFEEY--GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT 239 (423)
T ss_pred CcccccceEEeCC-----CCHHHHHHHHHHc--CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEcccc
Confidence 1122221 2799999998742 246777777644444898877 6889999999999999999986
Q ss_pred CCcccccC-CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 274 GPYVEIDV-RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 274 ~~~~~id~-~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
........ ........|++ ++.|.+++...+|++++++++ .+.+.+. +.. ....
T Consensus 240 g~r~g~~~~~~~~~~~pDi~--t~sK~l~~G~pig~v~~~~~i--~~~~~~~---~~~------------------~~~~ 294 (423)
T TIGR00713 240 GFRVALGGAQEYFGVEPDLT--TLGKIIGGGLPVGAFGGRREI--MERLAPE---GPV------------------YQAG 294 (423)
T ss_pred ccccCcchhHHHhCCCcchh--hhhhhhcCCCceeeeeEHHHH--HHhhCcC---CCe------------------eecc
Confidence 43211000 00000134654 577999854458999999888 3444321 000 0000
Q ss_pred c-CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce-EEeCCCCCCCcceEEEEeccCCCCCcCCC
Q 038499 353 S-GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI-KILGNTSTKRQAILSFNIHSSTINSSLGE 430 (609)
Q Consensus 353 ~-~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i-~v~~~~~~~r~~~~~f~~~~~~~~~~~~~ 430 (609)
. .+.|.......++++... +..-.+.+.+....+++.+.+.+.+.+-+ .+.+ ...++.+.+..+...
T Consensus 295 T~~~~~~~~aaa~a~l~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~~-----~g~~~~v~~~~~~~~----- 363 (423)
T TIGR00713 295 TLSGNPLAMAAGLATLKLLD-EEGVYTELDELAKRLAEGLSEVLEDTGIPHTVNR-----VGSMFSLFFTEEEVT----- 363 (423)
T ss_pred CCCCCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-----eccEEEEEEecCCCC-----
Confidence 1 122222333344444431 11123455555555555555555554211 1222 223444333220000
Q ss_pred CCCCCC-CCCCC---hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCC
Q 038499 431 NTKTET-DKPLH---GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYM 506 (609)
Q Consensus 431 ~~~~~~-~~~l~---~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~ 506 (609)
+.. ....+ ...+++.|.+ .||.+.++. .+.+|+++. +
T Consensus 364 ---~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~~l~~~--~ 404 (423)
T TIGR00713 364 ---NYADAKKSDTELFAKFFHEMLD-KGVFLPPSQ---------------------------------FEACFLSAA--H 404 (423)
T ss_pred ---ChhhhhcccHHHHHHHHHHHHH-CCeEEecCC---------------------------------ccceeeECC--C
Confidence 000 00011 2256667766 599876321 245788875 6
Q ss_pred CHHHHHHHHHHHHHHHHh
Q 038499 507 SNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 507 t~eeid~ll~al~~v~~~ 524 (609)
|++|+++++++|++++..
T Consensus 405 t~~~i~~~~~~l~~~l~~ 422 (423)
T TIGR00713 405 TEEDIENTIEAAEEVFAE 422 (423)
T ss_pred CHHHHHHHHHHHHHHHhh
Confidence 999999999999988754
|
This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases. |
| >PRK09221 beta alanine--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-11 Score=134.66 Aligned_cols=363 Identities=11% Similarity=0.071 Sum_probs=199.1
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|++ |+|..++ |-..+.|.+++.+++......+.. . ...+...++.++|.+++...
T Consensus 38 a~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~-----~-~~~~~~~~la~~L~~~~p~~ 108 (445)
T PRK09221 38 AEGMYYTDADGRK---ILDGTAGLWCCNAGHGRPEIVEAVARQAATLDYAPAF-----Q-MGHPLAFELAERLAELAPGG 108 (445)
T ss_pred ccccEEEeCCCCE---EEEccccHhhccCCCCCHHHHHHHHHHHHhccCcccc-----c-cCCHHHHHHHHHHHHhCCCC
Confidence 5567777777754 9998654 567789999999888653111110 0 11234456777788877533
Q ss_pred CCCcEEEeCChHHHHHHHHHHH-hcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcC------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEV-MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSL------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G------------~ 203 (609)
.+ .|.|+.||+.+ +...+++ .... ..-..+.+..|+.-...||+... ++...| .
T Consensus 109 ~~-~v~f~~sGseA-ve~AlklAr~~~----------~~~g~~~r~~ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~ 176 (445)
T PRK09221 109 LD-HVFFTNSGSES-VDTALKIALAYH----------RARGQGTRTRLIGRERGYHGVGFGGISVGGIVNNRKMFGGLLP 176 (445)
T ss_pred CC-EEEEeCCcHHH-HHHHHHHHHHHH----------HhcCCCCCcEEEEECCCcCccchhhhccCCChhhhhccCCCCC
Confidence 33 89999888885 3333222 1100 00011123356665556665432 121111 1
Q ss_pred eEEEEecCC---C---C-------CCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeE
Q 038499 204 EVVEIGLDD---D---G-------LLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFA 266 (609)
Q Consensus 204 ~vv~v~~~~---~---g-------~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~v 266 (609)
.+..++... . + ...++++++.+... ..+++.+|++..+....|.+.| +++|.++|++||+++
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~iAavi~Epv~g~~G~~~~~~~yl~~l~~lc~~~g~ll 255 (445)
T PRK09221 177 GVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALH-DASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILL 255 (445)
T ss_pred CCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhc-CCCcEEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEE
Confidence 233343221 0 0 01245777777632 1145778899999999999988 999999999999999
Q ss_pred EEecccc-CCccc--ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccc
Q 038499 267 CFDFAAS-GPYVE--IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342 (609)
Q Consensus 267 ivD~A~~-~~~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (609)
|+|++++ +|-.. ....... -..|+++++ |.++|. ..+|.+++++++. +.+... .. .. .
T Consensus 256 I~DEV~tG~GRtG~~~~~~~~g-v~PDi~~~g--K~l~gG~~Pi~av~~~~~i~--~~~~~~-~~-~~-----------~ 317 (445)
T PRK09221 256 IFDEVITGFGRLGAAFAAERFG-VTPDIITFA--KGLTNGAIPMGAVIASDEIY--DAFMQG-PE-YA-----------I 317 (445)
T ss_pred EEeehhhCCCcCchhhHHHhcC-CCCCEEEec--cccccCcccceeeEEcHHHH--HhhccC-cc-cc-----------c
Confidence 9999975 33211 1111110 134877665 888653 2368888888873 333210 00 00 0
Q ss_pred ccccccccccc-CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceE-EEEec
Q 038499 343 LYLEDIEERES-GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAIL-SFNIH 420 (609)
Q Consensus 343 ~~~~~~~~r~~-~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~-~f~~~ 420 (609)
.+ ..... .|.|-......+.+..+ + .+.+.++.+++.+++++.|+++.+...++.. ...+.+ .+.+.
T Consensus 318 ~~----~~~~T~~~~pl~~aaa~a~L~~i--~---~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v--rg~Gl~~~v~~~ 386 (445)
T PRK09221 318 EF----FHGYTYSAHPVACAAGLATLDIY--R---EEDLFERAAELAPYFEDAVHSLKGLPHVIDI--RNIGLVAGIELA 386 (445)
T ss_pred cc----ccccCCCcCHHHHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHhhccCCCEEEE--ecCceEEEEEEe
Confidence 00 00011 12332233333444433 2 1245677788888888877665222111111 112222 22222
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRI 500 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRl 500 (609)
. .. .+.......+.+.|.+ .||.++.+ ...+|+
T Consensus 387 ~-~~-----------~~~~~~~~~~~~~~~~-~Gv~~~~~----------------------------------~~~lr~ 419 (445)
T PRK09221 387 P-RP-----------GAPGARGYEAFMKCFE-KGLLVRYT----------------------------------GDTIAL 419 (445)
T ss_pred c-cc-----------ccccchHHHHHHHHHH-CCeEEeec----------------------------------CCEEEE
Confidence 2 10 0000123467777765 59988621 257999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 501 SFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 501 s~~~~~t~eeid~ll~al~~v~~~ 524 (609)
++++.+|++|+++++++|++++..
T Consensus 420 ~Ppl~~t~~eid~~~~~l~~~l~~ 443 (445)
T PRK09221 420 SPPLIIEKAQIDELVDALGDALRA 443 (445)
T ss_pred ECCccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999998864
|
|
| >COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3e-12 Score=124.89 Aligned_cols=323 Identities=16% Similarity=0.113 Sum_probs=197.3
Q ss_pred HHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEE-CCCCccchHH
Q 038499 119 TTNMVHEASNYIKKCLGGGQE-DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFV-GPHEHHSNLL 196 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv-~~~~h~s~~~ 196 (609)
-..+.+.+...+.+-+|-+-. ++|.+| +|+..+...+...++-. ...|+...|+. -.++|-++..
T Consensus 76 ~~~li~ala~~l~~~ygwnit~~NIalT-nGSQs~fFYlfNlF~G~------------~sdG~~k~illPLaPeYiGY~d 142 (417)
T COG3977 76 KAVLIDALAKMLRREYGWNITAQNIALT-NGSQSAFFYLFNLFAGR------------RSDGTEKKILLPLAPEYIGYAD 142 (417)
T ss_pred hhHHHHHHHHHHHHHhCCCCccceeeec-CCccchHHHHHHHhcCc------------cCCCcceeEeeccChhhccccc
Confidence 456677777788888886532 389998 89999999888887632 13344334444 3566666554
Q ss_pred HHHHcCceEEE---EecCC----CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeE
Q 038499 197 SWRQSLAEVVE---IGLDD----DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFA 266 (609)
Q Consensus 197 ~~~~~G~~vv~---v~~~~----~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~v 266 (609)
....-.+=|.. +.+.+ ..++|.++|. +. +.+-++++|-|.||||.+.. +.+|.+++++||+.+
T Consensus 143 ~~l~~d~fVs~kP~iel~~~g~FKY~vDF~~l~--i~-----e~~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPl 215 (417)
T COG3977 143 AGLEEDLFVSAKPNIELLPAGQFKYHVDFEHLH--IG-----ESTGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPL 215 (417)
T ss_pred cccCccceeeccCCcccccccceeeccCHHHcc--cc-----cccceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcE
Confidence 33221111111 11222 2477888765 33 57889999999999999955 556778899999999
Q ss_pred EEeccccCCcccccCCCCCC-CC-ccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 267 CFDFAASGPYVEIDVRSGQT-DG-YDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 267 ivD~A~~~~~~~id~~~~~~-~~-~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
++|.|++.|.-.+.+..... .+ --+.++|.+|. |-|+ .+|+++.+++++ ..+... .+.+...
T Consensus 216 iIDnAYg~PFP~iifsd~~~~w~~NiilC~SLSK~-GLPG~R~GIiIane~vi--qaitnm---n~iisLa--------- 280 (417)
T COG3977 216 IIDNAYGVPFPGIIFSDATPLWNENIILCMSLSKL-GLPGSRCGIIIANEKVI--QAITNM---NGIISLA--------- 280 (417)
T ss_pred EEecccCCCCCceecccccccCCCCEEEEeehhhc-CCCCcceeEEEccHHHH--HHHHhc---cceeeec---------
Confidence 99999998876654443211 22 34778899998 4464 499999999983 222111 0110000
Q ss_pred ccccccccccCCChhHHH-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccC
Q 038499 344 YLEDIEERESGGTPQVIQ-MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSS 422 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~-~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~ 422 (609)
+.| .| |++.+ ++..+--..+.+++=..-.+++.+...+.++..+-+. .+.+..+ ...||+|....
T Consensus 281 -----p~~--~G-~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~-~~~iHkp----EGAIFlWLWf~- 346 (417)
T COG3977 281 -----PGR--MG-PAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEY-RCLIHKP----EGAIFLWLWFK- 346 (417)
T ss_pred -----CCC--cc-HHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCcc-ceeeecC----Ccceeehhhhc-
Confidence 011 11 23322 1211111111232222333444444455555555543 4566655 45788777665
Q ss_pred CCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec
Q 038499 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF 502 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~ 502 (609)
+ .+++..++.++|.. .|+.+.+|..+- .|++++... ...++|+|.
T Consensus 347 d--------------LPItt~~LYq~LKa-~Gvl~VPG~~FF-------pGl~~ewpH-------------~hqC~Rmn~ 391 (417)
T COG3977 347 D--------------LPITTEELYQRLKA-RGVLMVPGHYFF-------PGLDKEWPH-------------THQCMRMNY 391 (417)
T ss_pred c--------------CCCCHHHHHHHHHh-CeEEEecccccC-------CCCCCCCCC-------------ccceEEEec
Confidence 2 34788999999965 599999887554 233332222 358999997
Q ss_pred CCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 503 PYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 503 ~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
. -++++++.-+++|.+.+++.+.
T Consensus 392 ~--~~~~~ie~Gva~lae~ve~~yq 414 (417)
T COG3977 392 V--PEPEKIEKGVAILAEEVERAYQ 414 (417)
T ss_pred C--CCHHHHHHHHHHHHHHHHHHHh
Confidence 5 4889999999999888877553
|
|
| >PRK08593 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4e-11 Score=130.49 Aligned_cols=356 Identities=15% Similarity=0.094 Sum_probs=195.4
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++.... ..+.. ....+...++.+.|++.+...
T Consensus 31 a~G~~l~D~dG~---~ylD~~~g~~~~~lGH~~p~v~~Ai~~ql~~~~-~~~~~-----~~~~~~~~~lae~L~~~~p~~ 101 (445)
T PRK08593 31 GYGATLTDVDGK---TYIDLLASASSQNVGHAPPRVVEAIKAQADKFI-HYTPA-----YMYHEPLVRLAKKLCELAPGD 101 (445)
T ss_pred eeeCEEEeCCCC---EEEECCccHHhhcCCCCCHHHHHHHHHHHHhcc-Ccccc-----ccCCHHHHHHHHHHHHhCCCC
Confidence 445556666664 38887543 5567899999998886431 11110 012344567778888887543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc-hHHHHHHcC-------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS-NLLSWRQSL-------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~~~~G-------------~ 203 (609)
..+.|.|+.||+.+.-..+-.+.. . .|.+ .|+.-...||. ....+...+ .
T Consensus 102 ~~~~v~f~~SGseA~e~AiklAr~--------------~-tgr~-~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~ 165 (445)
T PRK08593 102 FEKRVTFGLSGSDANDGIIKFARA--------------Y-TGRP-YIISFTNAYHGSTYGSLSMSGISLNMRRKYGPLLP 165 (445)
T ss_pred CCCEEEECCchHHHHHHHHHHHHH--------------h-hCCC-eEEEECCCcCCCcHHHHhhcCCCcccccCCCCCCC
Confidence 223899998888863333221211 1 2322 45554444444 333332222 1
Q ss_pred eEEEEecCCC-----CCCC-------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 204 EVVEIGLDDD-----GLLD-------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 204 ~vv~v~~~~~-----g~ld-------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
.++.++.... +..+ ++++++.+.+....+++.+|++..+.+..|.+.| +++|.++|++||+++|
T Consensus 166 ~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv~g~gG~~~~~~~yl~~l~~lc~~~g~llI 245 (445)
T PRK08593 166 GFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYFEALYKFCREHGILFA 245 (445)
T ss_pred CcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 2344443221 0111 2445544432111246789999999999999877 8899999999999999
Q ss_pred Eecccc-CCcccc--cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 268 FDFAAS-GPYVEI--DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 268 vD~A~~-~~~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
+|+++. ++...- ...... -..|++++ .|.+||...+|++++++++ .+.+.+...+
T Consensus 246 ~DEv~tg~GrtG~~~a~~~~g-v~pDi~t~--gK~l~~G~p~gav~~~~~i--~~~~~~~~~~----------------- 303 (445)
T PRK08593 246 VDDIQQGLGRTGKWSSISHFN-ITPDLMSF--GKSLAGGMPMSAIVGRKEI--MESLEAPAHL----------------- 303 (445)
T ss_pred EechhhCCCcCchHHHHHhcC-CCCCEeee--cccccCCcccEEEEEcHHH--HhhhccCCCC-----------------
Confidence 999974 332211 001110 13577655 5999764457999999888 3333211000
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCce-EEeCCCCCCCcceEEEEe
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNI-KILGNTSTKRQAILSFNI 419 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i-~v~~~~~~~r~~~~~f~~ 419 (609)
.-..+.|-......+.++.+. .+.+.++.+++.+++.+.|++ .|.+ .+-+ ....+.+.+
T Consensus 304 ------~T~~~~pl~~aaa~a~l~~l~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG-----~Gl~~gi~l 367 (445)
T PRK08593 304 ------FTTGANPVSCAAALATIDMIE-----DESLLQRSAEKGEYARKRFDQWVSKYNFVGDVRG-----YGLSIGIDI 367 (445)
T ss_pred ------CCCCCCHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHHHhcCCcEEEEec-----cceEEEEEE
Confidence 001233433333344444432 123455666666666666653 3322 1111 112223333
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
.. .... ..........+...|.+ .||.+.+. ....+|
T Consensus 368 ~~-~~~~--------~~~~~~~~~~~~~~~~~-~Gv~~~~~---------------------------------~~~~lr 404 (445)
T PRK08593 368 VS-DKKL--------KTRDNEAALKICNYCFE-HGVVIIAV---------------------------------AGNVLR 404 (445)
T ss_pred ec-CCCc--------CCCcHHHHHHHHHHHHH-CCeEEecc---------------------------------CCCEEE
Confidence 22 1000 00000113456667755 59887521 136799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+.+++.+|++|++++++++++++...
T Consensus 405 ~~p~l~~t~~~id~~~~~l~~~l~~~ 430 (445)
T PRK08593 405 FQPPLVITYEQLDTALNTIEQAFTAL 430 (445)
T ss_pred EECCCccCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988764
|
|
| >PRK05769 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.6e-11 Score=129.20 Aligned_cols=349 Identities=16% Similarity=0.120 Sum_probs=191.2
Q ss_pred CccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 038499 66 NAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE 139 (609)
Q Consensus 66 ~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~ 139 (609)
+.++.+..|+ .|+|..++ |-..+.|.+++.+++.... ..... ........++.+.|.+.+..+..
T Consensus 45 G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~-~~~~~-----~~~~~~~~~lAe~L~~~~p~~~~ 115 (441)
T PRK05769 45 GVWVEDVDGN---VYLDFNAGIAVTNVGHAHPKVVKAVKEQAEKFL-HYSLT-----DFYYEPAVELAERLVEIAPGGFE 115 (441)
T ss_pred eEEEEeCCCC---EEEECCCchhhcccCCCCHHHHHHHHHHHHhcc-CccCc-----ccCCHHHHHHHHHHHHhCCCCCC
Confidence 3444444453 48998654 4456889999988886431 11110 01123456677778777753222
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC-------------ceE
Q 038499 140 DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL-------------AEV 205 (609)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G-------------~~v 205 (609)
+.|.|+.|||.+.-.++-.+.. . .|.+ .|+.-...||+.. ..+...+ ..+
T Consensus 116 ~~v~f~~SGsEA~e~AlklAr~--------------~-tgr~-~Ii~~~~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~ 179 (441)
T PRK05769 116 KKVFFTNSGTESNEAAIKIARY--------------H-TGRK-YIIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGV 179 (441)
T ss_pred CEEEECCchHHHHHHHHHHHHH--------------H-hCCC-eEEEECCCcCCccHHHHHhcCCCcccccCCCCCCCCe
Confidence 3899998888863332221111 1 2322 4665555555443 2222211 123
Q ss_pred EEEecCCCCC-------------CCHHHHHHHH-hhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 206 VEIGLDDDGL-------------LDIEALRSKL-ELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 206 v~v~~~~~g~-------------ld~e~L~~al-~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
..++...... -+++.+++.+ +.....+++.+|++..+....|.+.| +++|.++|++||+++|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~Epv~g~~G~~~~~~~~l~~l~~l~~~~g~lli 259 (441)
T PRK05769 180 IHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELRKLADKYGILLI 259 (441)
T ss_pred EEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEECcccCCCCCcCCCHHHHHHHHHHHHHcCCEEE
Confidence 3443321100 0133455523 21111246778899999888999988 9999999999999999
Q ss_pred EeccccC-Cccc--ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 268 FDFAASG-PYVE--IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 268 vD~A~~~-~~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
+|+++++ +... ....... -..|+++++ |.+|+...+|++++++++ .... +...+ ++
T Consensus 260 ~DEv~tG~gr~G~~~a~~~~g-v~pDivt~~--K~l~~G~p~gav~~~~~i--~~~~-~~~~~-~T-------------- 318 (441)
T PRK05769 260 DDEVQTGMGRTGKMFAIEHFG-VEPDIITLA--KAIAGGLPLGAVIGRAEL--MFLP-PGSHA-NT-------------- 318 (441)
T ss_pred EechhhCCCcccceehhhccC-CCCCEEEEc--ccccCCcccEEEEEehhh--hhcC-CCCCC-CC--------------
Confidence 9999773 2221 1111111 135888765 988865557999999887 2221 11100 00
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCce-EEeCCCCCCCcceEEEEe
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNI-KILGNTSTKRQAILSFNI 419 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i-~v~~~~~~~r~~~~~f~~ 419 (609)
..|.|.......++++.+ + . .+.++.+++.+++++.|++ .+-+ ++.+ +..++.+.+
T Consensus 319 --------~~g~p~~~aaa~a~L~~l--~---~-~~~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg-----~G~~~~i~~ 379 (441)
T PRK05769 319 --------FGGNPVAAAAALATLEEL--E---E-GLLENAQKLGEYLRKELKELKEKYEFIGDVRG-----LGLMIGVEL 379 (441)
T ss_pred --------CCcCHHHHHHHHHHHHHH--H---H-HHHHHHHHHHHHHHHHHHHHHHhCCCeeeeec-----ceEEEEEEe
Confidence 123333333333444443 2 1 4455666666666666644 3321 1211 223444333
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
.. +.. .........+.+.+.+ .||.+.+. ....+|
T Consensus 380 ~~-~~~----------~~~~~~~~~~~~~~~~-~Gil~~~~---------------------------------~~~~lr 414 (441)
T PRK05769 380 VK-DRK----------EPDPKLRDKVLYEAFK-RGLLLLGA---------------------------------GKSAIR 414 (441)
T ss_pred cc-CCc----------cccHHHHHHHHHHHHh-CCcEEecC---------------------------------CCCEEE
Confidence 32 100 0000013456666655 59887521 136799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++++.+|++|++++++++++++..
T Consensus 415 ~~p~l~~t~~~id~~~~~l~~~l~~ 439 (441)
T PRK05769 415 IIPPLIITEEEADIGLEILEEAIKE 439 (441)
T ss_pred EeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998764
|
|
| >PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-11 Score=130.95 Aligned_cols=348 Identities=18% Similarity=0.164 Sum_probs=193.9
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+..|++ |+|..++ |-.++.|.+++.+++... ...+.. ...+....++.+.+.+.+..+
T Consensus 28 ~~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~-~~~~~~-----~~~~~~~~~lae~l~~~~~~~ 98 (425)
T PRK09264 28 AKGSWLYDEDGKE---YIDFFAGAGALNYGHNNPVLKQALIDYLQRD-GITHGL-----DMHTTAKREFLETFEETILKP 98 (425)
T ss_pred eecCEEEeCCCCE---eeecccchhhccCCCCCHHHHHHHHHHHHhc-cccccc-----ccCcHHHHHHHHHHHHhhcCC
Confidence 4456666666653 8897544 667899999999888642 122211 011234556666777765322
Q ss_pred C--CCcEEEe-CChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHc---------C--
Q 038499 138 Q--EDAMIFC-GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQS---------L-- 202 (609)
Q Consensus 138 ~--~~~vift-~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~---------G-- 202 (609)
. ++.+.|+ .||+.+ +...+++.- .. +|.+ .|+.-...||+.. .++... +
T Consensus 99 ~~~~~~~~f~~~sGseA-~e~AlklAr-------------~~-tgr~-~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~ 162 (425)
T PRK09264 99 RGLDYKVQFTGPTGTNA-VEAALKLAR-------------KV-TGRT-NIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVP 162 (425)
T ss_pred cCCCceEEEeCCCHHHH-HHHHHHHHH-------------Hh-cCCC-eEEEECCccCCccHHHHHhcCCcccccCCCCC
Confidence 1 1256664 578875 333333210 01 2322 4665555555543 222211 1
Q ss_pred -ceEEEEecCCC--C-CCCHHHHHHHHhhhccC-CCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc
Q 038499 203 -AEVVEIGLDDD--G-LLDIEALRSKLELYKDA-KRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 203 -~~vv~v~~~~~--g-~ld~e~L~~al~~~~~~-~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~ 273 (609)
..+..+|.... . .-|+++|++.+.+.... +++.++++..+....|.+.+ +++|.++|++||+++|+|++++
T Consensus 163 ~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~t 242 (425)
T PRK09264 163 LNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQA 242 (425)
T ss_pred CCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhh
Confidence 13455554321 0 12678888888643211 25678889988888887653 8899999999999999999986
Q ss_pred C-Ccc----cccCCCCCCCCccEEEEcCCCCCCC-CCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 274 G-PYV----EIDVRSGQTDGYDAIFLSTHKFLGG-PGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 274 ~-~~~----~id~~~~~~~~~D~v~~S~hK~lgg-p~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
+ |-. ..+.... ..|+++++ |.+++ ...+|++++++++ . .+.+...+ ++
T Consensus 243 G~GrtG~~~~~~~~~v---~PDi~t~~--K~l~~~G~pigav~~~~~i--~-~~~~~~~~-~T----------------- 296 (425)
T PRK09264 243 GCGRTGTFFSFERAGI---TPDIVTLS--KSISGYGLPMALVLIKPEL--D-VWKPGEHN-GT----------------- 296 (425)
T ss_pred CCccccHHHHHhhcCC---CCCEEEec--cccCCCccceEEEEEchhh--h-ccCCCccC-CC-----------------
Confidence 3 111 1111111 45877665 99985 3347999998776 1 22111110 00
Q ss_pred ccccccCCChhHHHHHHHHH-HHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCceEEeCCCCCCCcceE-EEEecc
Q 038499 348 IEERESGGTPQVIQMIRAAL-AFWVKEYIGHEVIKKQEETYIERALERLLP----NQNIKILGNTSTKRQAIL-SFNIHS 421 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal-~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i~v~~~~~~~r~~~~-~f~~~~ 421 (609)
..|.|.-.....+++ .++ ..+.+.++.+++.+++.++|++ .|.+ + .. ....+.+ .+.+.+
T Consensus 297 -----~~gnp~~~aaa~a~l~~~~-----~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~-~-~~--vrg~Gl~~~i~l~~ 362 (425)
T PRK09264 297 -----FRGNNLAFVTATAALEEYW-----SDDAFEKEVKAKGELVRERLEEIAAKYPGL-G-AE--VRGRGMMQGIDFGD 362 (425)
T ss_pred -----CCCCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHhCCCc-e-ec--ceecccEEEEEecC
Confidence 123332222222333 222 1234556666666666666543 3322 1 11 1112333 333332
Q ss_pred CCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEe
Q 038499 422 STINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRIS 501 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls 501 (609)
. .....+.+.+.+ .||.+.+.. . ....+|++
T Consensus 363 -~----------------~~~~~l~~~~~~-~Gv~~~~~~-------~------------------------~~~~lr~~ 393 (425)
T PRK09264 363 -G----------------ELAGKIAAEAFE-NGLIIETSG-------P------------------------EDEVVKLL 393 (425)
T ss_pred -h----------------HHHHHHHHHHHH-CCCEEeccC-------C------------------------CCCEEEEe
Confidence 1 124567777765 599886321 0 13689999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 502 FPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 502 ~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+++.+|++|+++++++|+++++..
T Consensus 394 p~l~~t~~ei~~~~~~l~~~l~~~ 417 (425)
T PRK09264 394 PPLTIDEEELEEGLDILEEAVAEV 417 (425)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999988654
|
|
| >PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.4e-11 Score=129.38 Aligned_cols=358 Identities=14% Similarity=0.068 Sum_probs=199.6
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|++ |+|..++ |-..+.|.+++.+++.+.. .... ...+.+...++.+.+.+.+..+
T Consensus 33 a~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~-----~~~~~~~~~~lae~L~~~~p~~ 103 (429)
T PRK06173 33 ADGVMITLKDGRR---LIDGMSSWWAALHGYNHPRLNAAATNQLAKMS-HIMF-----GGFTHEPAVELAQKLLEILPPS 103 (429)
T ss_pred ceeeEEEcCCCCE---EEEccchHHhccCCCCCHHHHHHHHHHHHhcC-Cccc-----cccCCHHHHHHHHHHHhhCCCC
Confidence 4455666666643 9997654 5677899999998886531 1111 0112344566777787777543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHcC-------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQSL-------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G-------------~ 203 (609)
-+ .|.|+.||+++ +...+++--. .. ...-+++. ..|+.-...||.. ..++...+ .
T Consensus 104 ~~-~v~f~~sGseA-ve~AlklAr~-~~-------~~~g~~~r-~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~ 172 (429)
T PRK06173 104 LN-KIFFADSGSVA-VEVAMKMALQ-YQ-------QAKGEVQR-TKFATIRSGYHGDTWHAMSVCDPVTGMHGLFNHSLP 172 (429)
T ss_pred cC-EEEEeCCchHH-HHHHHHHHHH-HH-------HHhCCCCC-cEEEEECCCcCCcchhhhccCCCchhhhhcccccCC
Confidence 33 89999888886 3322222100 00 00001333 3566656556553 22221111 1
Q ss_pred eEEEEecCCC------CCCCHHHHHHHHhhhccCCCceEEEEecc-cCccccccC----HHHHHHHHHHhCCeEEEeccc
Q 038499 204 EVVEIGLDDD------GLLDIEALRSKLELYKDAKRPILGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAA 272 (609)
Q Consensus 204 ~vv~v~~~~~------g~ld~e~L~~al~~~~~~~~~~lv~~s~~-sn~TG~~~d----l~~I~~la~~~g~~vivD~A~ 272 (609)
.+..+|.... ..-+++.|++.+..+ .+++..+++... +...|.+.+ +++|.++|++||+++|+|+++
T Consensus 173 ~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~--~~~iAAvi~EPi~qg~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~ 250 (429)
T PRK06173 173 VQYFLPQPSIKFGEEWNDEAIEPLQDLLEQK--GDEIAALILEPVVQGAGGMYFYSPTYLVKARELCDQYGVLLIFDEIA 250 (429)
T ss_pred CCeEeCCCCcccchhHHHHHHHHHHHHHHhC--CCcEEEEEEcchhhccCCcccCCHHHHHHHHHHHHHcCCeEEecchh
Confidence 1233332110 011466777887632 245778888875 788888755 678999999999999999998
Q ss_pred cC-Cccccc--CCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccc
Q 038499 273 SG-PYVEID--VRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI 348 (609)
Q Consensus 273 ~~-~~~~id--~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (609)
.+ |...-- ....+ -..|++++ .|.++|.. .++.+++++++. +.+.+... +...
T Consensus 251 tG~GrtG~~~a~~~~g-v~PDiv~~--gK~l~gG~~p~~a~~~~~~i~--~~~~~~~~--~~~~---------------- 307 (429)
T PRK06173 251 TGFGRTGKLFALEHAG-VVPDIMCI--GKALTGGYLTLSATITTEAIA--QTICSGEA--KCFM---------------- 307 (429)
T ss_pred cCCCcCCcchHHHhcC-CCCCEEEe--ehhhhCCccccceEEecHHHH--HHHhcCCC--Cccc----------------
Confidence 53 211100 01111 14588874 69997652 468888888873 22211000 0000
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcC
Q 038499 349 EERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSL 428 (609)
Q Consensus 349 ~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~ 428 (609)
...-..|.|...+...++++.... . .+.++.+++.+++.+.|+++.+...++.. ..+..++.+.+.. .
T Consensus 308 ~~~T~~g~p~~~aaa~a~l~~i~~--~---~~~~~~~~~g~~l~~~L~~~~~~~~v~~v-Rg~Gl~~~iel~~-~----- 375 (429)
T PRK06173 308 HGPTFMANPLACAIAAESIRLLLE--S---PWQQNIQRIEAQLKQELAPAAEFDSVAEV-RVLGAIGVVEMKE-P----- 375 (429)
T ss_pred cCCCCCcCHHHHHHHHHHHHHHHh--C---CHHHHHHHHHHHHHHHHHHhhcCCCeeee-eccceEEEEEeCC-c-----
Confidence 000012344444444555555422 1 23556666667777766543222212111 0133455555543 2
Q ss_pred CCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCH
Q 038499 429 GENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSN 508 (609)
Q Consensus 429 ~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ 508 (609)
.....+.+.|.+ .||.+++. ...+|+.+++..|+
T Consensus 376 -----------~~~~~i~~~l~e-~Gi~v~~~----------------------------------g~~l~~~Ppl~it~ 409 (429)
T PRK06173 376 -----------VNMATLQPRFVE-HGIWVRPF----------------------------------GKLVYIMPPFIISP 409 (429)
T ss_pred -----------ccHHHHHHHHHH-CCeEEEec----------------------------------CCEEEEeCCccCCH
Confidence 134678888866 59988621 15799999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 038499 509 EEFEFTLEALEFIAIY 524 (609)
Q Consensus 509 eeid~ll~al~~v~~~ 524 (609)
+|+++++++|++++..
T Consensus 410 ~ei~~~~~~l~~~l~~ 425 (429)
T PRK06173 410 DELSQLTSGLLRVLKQ 425 (429)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998864
|
|
| >PRK12403 putative aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.2e-11 Score=129.42 Aligned_cols=229 Identities=17% Similarity=0.056 Sum_probs=132.1
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++..... .. ...........++.++++++++..
T Consensus 43 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~hp~v~~A~~~q~~~~~~---~~--~~~~~~~~~~~~lae~L~~~~p~~ 114 (460)
T PRK12403 43 GEGLHLWDNDGK---RYLDGMSGLWCTNLGYGRKDLAAAAARQMEQLPY---YN--MFFHTTHPAVIELSELLFSLLPGH 114 (460)
T ss_pred ceeeEEEeCCCC---EEEECchhHHhhcCCCCCHHHHHHHHHHHHhCCC---ee--cccccCCHHHHHHHHHHHHhCCCC
Confidence 556677777765 49996543 56778999999998875311 10 000112345667888888888744
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCC-CccchHHHHHHcCce-----------E
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPH-EHHSNLLSWRQSLAE-----------V 205 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~-~h~s~~~~~~~~G~~-----------v 205 (609)
-+ .++|+.||+++.-. .+++.-. .. . ..=++++ .+|+.-.. .|.+....+...|.+ +
T Consensus 115 ~~-~v~f~~SGseA~e~-AiklAr~-~~---~----~~g~~~r-~~ii~~~~~yHG~t~~~~s~s~~~~~~~~~~~~~~~ 183 (460)
T PRK12403 115 YS-HAIYTNSGSEANEV-LIRTVRR-YW---Q----VLGKPQK-KIMIGRWNGYHGSTLAATALGGMKFMHEMGGLIPDV 183 (460)
T ss_pred cC-EEEEeCCcHHHHHH-HHHHHHH-HH---H----hhCCCCC-cEEEEECCCcCcccHhhhhcCCCccccccCCCCCCC
Confidence 33 78998888886333 3332200 00 0 0002222 24444333 355544444433322 2
Q ss_pred EEEecCCC----CC--------CCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEe
Q 038499 206 VEIGLDDD----GL--------LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFD 269 (609)
Q Consensus 206 v~v~~~~~----g~--------ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD 269 (609)
..++.... .. .++++|++.+.+ ...+++..|++..+....|.+.| +++|.++|++||+++|+|
T Consensus 184 ~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~-~~~~~iaavI~Epv~g~gG~~~~~~~yl~~lr~lc~~~g~lLI~D 262 (460)
T PRK12403 184 AHIDEPYWYANGGELTPAEFGRRAALQLEEKILE-LGAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCAD 262 (460)
T ss_pred EEeCCCcccccccCCChHHHHHHHHHHHHHHHHH-hCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEe
Confidence 33331110 01 113556666542 11245678889988888899888 899999999999999999
Q ss_pred ccccCC-cccc--cCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechh
Q 038499 270 FAASGP-YVEI--DVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKAL 315 (609)
Q Consensus 270 ~A~~~~-~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~ 315 (609)
+++++- -... -....+. ..|++++ .|.+||.. .+|.+++++++
T Consensus 263 EV~tGfGRtG~~~a~e~~gv-~PDiv~~--gK~lggG~~Piga~v~~~~i 309 (460)
T PRK12403 263 EVIGGFGRTGEWFAHEHFGF-EPDTLSI--AKGLTSGYVPMGGLVLSKRI 309 (460)
T ss_pred ccccCCCcCchhhhhhhcCC-CCCeEEE--cccccccccceEEEEECHHH
Confidence 998532 2111 0111111 3588875 59998653 57888888887
|
|
| >PRK07678 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.8e-11 Score=130.06 Aligned_cols=370 Identities=12% Similarity=0.088 Sum_probs=197.7
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..++ |-..+.|.+++.+++......+. . ...+...++.+.|.++++..
T Consensus 36 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~~~~~---~----~~~~~~~~lae~l~~~~~~~ 105 (451)
T PRK07678 36 AEGAWVTDIQGN---RYLDGMSGLWCVNVGYGRKELAEAAYEQLKTLSYFPL---T----QSHEPAIKLAEKLNEWLGGE 105 (451)
T ss_pred eeeeEEEeCCCC---EEEEccccHHhhcCCCCCHHHHHHHHHHHHhcCcccc---c----cCCHHHHHHHHHHHHhCCCC
Confidence 445666666664 38997654 66778999999888865311111 0 11234556777888887653
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------~~ 204 (609)
+.+.|+.||+.+.-.++-.+.... . ..=+++. ..|+.-...||+.. .+....+ ..
T Consensus 106 --~~v~f~~sGseA~e~AlklAr~~t------~---~~g~~~r-~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~ 173 (451)
T PRK07678 106 --YVIFFSNSGSEANETAFKIARQYH------A---QKGEPHR-YKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPG 173 (451)
T ss_pred --CEEEEeCCcHHHHHHHHHHHHHHH------H---hcCCCCC-cEEEEECCCcCCccHHHhhcCCCcccccccCCCCCC
Confidence 379999888886322221111100 0 0001233 35665555555533 2222111 12
Q ss_pred EEEEecCCCCCC---------C---HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 205 VVEIGLDDDGLL---------D---IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 205 vv~v~~~~~g~l---------d---~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
+..++....... | ++.+++.+.. ...+++..+++..+....|.+.| ++++.++|++||+++|+
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~ 252 (451)
T PRK07678 174 FLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTW-ELSETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLIS 252 (451)
T ss_pred CEEeCCCccccccccCChHHHHHHHHHHHHHHHHh-cCCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 333332211111 1 2335666642 11246778888888888888876 78899999999999999
Q ss_pred ecccc-CCccc--ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 269 DFAAS-GPYVE--IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 269 D~A~~-~~~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
|+++. ++-.. .-....+ -.+|+++++ |.+||. ..+|.+++++++. +.+.+... .+.+.
T Consensus 253 DEV~tGfGRtG~~~~~~~~g-v~PDivt~g--K~lggG~~Pi~av~~~~~i~--~~~~~~~~-~~~~~------------ 314 (451)
T PRK07678 253 DEVICGFGRTGKAFGFMNYG-VKPDIITMA--KGITSAYLPLSATAVKKEIY--EAFKGKGE-YEHFR------------ 314 (451)
T ss_pred eehhhcCCcCchhHHHHhcC-CCCCEEEee--cccccCCcceeEEEEcHHHH--HHHhccCc-ccccc------------
Confidence 99974 33221 0111111 146988875 999875 3589999999883 33322100 00000
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh----CCCCce-EEeCCCCCCCcceEEEEe
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL----LPNQNI-KILGNTSTKRQAILSFNI 419 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L----~~~p~i-~v~~~~~~~r~~~~~f~~ 419 (609)
...-..|.|-..+...+.++.. +.. .+.++.+++.+++.+.| .+.+.+ ++.+ +..++.+.+
T Consensus 315 ----h~~T~~gnp~~~aaa~a~l~~l--~~~---~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vrg-----~Gl~~~i~~ 380 (451)
T PRK07678 315 ----HVNTFGGNPAACALALKNLEIM--ENE---NLIERSAQLGELLLEQLKEELGEHPLVGDIRG-----KGLLVGIEL 380 (451)
T ss_pred ----cCCCCCcCHHHHHHHHHHHHHH--HhC---CHHHHHHHHHHHHHHHHHHHHhcCCCEEEEEe-----eceEEEEEE
Confidence 0001133444444445555544 222 34445555555555555 334322 1222 234444444
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
.. +... ......-....+...|.+ .||.+.+.. |.... ....+|
T Consensus 381 ~~-~~~~-------~~~~~~~~a~~i~~~l~~-~Gv~~~~~g----~~v~~-----------------------~~~~lr 424 (451)
T PRK07678 381 VN-DKET-------KEPADNDKVASVVAACKE-KGLIIGKNG----DTVAG-----------------------YNNVLT 424 (451)
T ss_pred ec-CCcc-------cCcCchHHHHHHHHHHHH-CCcEEeecC----ccccC-----------------------CCCEEE
Confidence 32 1000 000000113466777766 599886310 10000 136799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++++.+|++|++++++++++++..
T Consensus 425 l~Ppl~it~~eid~~~~~l~~~l~~ 449 (451)
T PRK07678 425 LSPPLVISSEEIAFIVGTLKTALER 449 (451)
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998865
|
|
| >PRK06918 4-aminobutyrate aminotransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.50 E-value=9.9e-11 Score=127.88 Aligned_cols=359 Identities=15% Similarity=0.134 Sum_probs=188.9
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..++ |-..+.|.+++.+++.... +... .........++.+.|.+++...
T Consensus 43 ~~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~~---~~~~~~~~~~la~~L~~~~p~~ 113 (451)
T PRK06918 43 ANGALVTDVDGN---QYIDFAGAIGTINVGHSHPKVKEALHKQVDQYI---HTGF---NVMMYEPYIELAEKLAALAPGS 113 (451)
T ss_pred ccccEEEeCCCC---EEEEcCCchhhcCCCCCCHHHHHHHHHHHHhcc---Cccc---cccccHHHHHHHHHHHHhCCCC
Confidence 445566666664 38997654 5667899999998886531 1110 0012344567777888887643
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC-------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL-------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G-------------~ 203 (609)
..+.+.|+.|||.+ +...+++-- .. .|.+ .|+.-...||+.. ..+...+ .
T Consensus 114 ~~~~v~f~~sGseA-~e~AlklAr-------------~~-tgr~-~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~ 177 (451)
T PRK06918 114 FDKKVLFLNSGAEA-VENAVKIAR-------------KY-TKRQ-GIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAP 177 (451)
T ss_pred CCCEEEEcCCcHHH-HHHHHHHHH-------------HH-hCCC-cEEEECCCcCccchhhhhhcCCCccccccCCCCCC
Confidence 32389999888886 333322210 01 1222 4555555555443 2222111 1
Q ss_pred eEEEEecCC-----CCCC-------CHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 204 EVVEIGLDD-----DGLL-------DIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 204 ~vv~v~~~~-----~g~l-------d~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
.+..+|... .+.. .++.+++.+......+++..+++...+...|.+.+ +++|.++|++||+++|
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~gG~~~~~~~~l~~l~~l~~~~gillI 257 (451)
T PRK06918 178 EVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVRNICSEHGILFV 257 (451)
T ss_pred CcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 133333221 1110 02234443321111245667778777766787655 6789999999999999
Q ss_pred EeccccCC-ccc--ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 268 FDFAASGP-YVE--IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 268 vD~A~~~~-~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
+|+++... ... ..+.... ...|++ ++.|.+++...+|++++++++ .+.+.+...+ ++
T Consensus 258 ~DEV~tg~gr~g~~~a~~~~~-v~pDi~--t~sK~l~~G~pig~v~~~~~i--~~~~~~~~~~-~T-------------- 317 (451)
T PRK06918 258 ADEIQTGFARTGKYFAIEHFD-VVPDLI--TVSKSLGAGVPISGVIGRKEI--MDESAPGELG-GT-------------- 317 (451)
T ss_pred EeccccCcCccCceehhHhcC-CCCCEE--eeehhhcCCCccEEEEEcHHH--HhccCCCCcC-cC--------------
Confidence 99996532 222 1111111 125755 567999865668999999888 3443222110 00
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCceEEeCCCCCCCcceEEEEec
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNIKILGNTSTKRQAILSFNIH 420 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i~v~~~~~~~r~~~~~f~~~ 420 (609)
..+.|-......+++++. +. +.+.++.+++.+++.++|++ .|.+.-+. ....++.+...
T Consensus 318 --------~~g~~l~~aaa~a~l~~i--~~---~~~~~~~~~~g~~l~~~l~~l~~~~~~~~~vr----g~G~~~~~~~~ 380 (451)
T PRK06918 318 --------YAGSPLGCAAALAVLDII--EK---ENLNDRAIELGKVVMNRFEEMKNKYNCIGDVR----GLGAMCAFELV 380 (451)
T ss_pred --------CCcCHHHHHHHHHHHHHH--HH---CCHHHHHHHHHHHHHHHHHHHHhhCCCceeec----cceeEEEEEEc
Confidence 122332233333444433 22 22334444555555555543 33221111 12334444332
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRI 500 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRl 500 (609)
.+... . .........+.+.+.+ .||.+.++..+ .+++|+
T Consensus 381 ~~~~~-~--------~~~~~~~~~l~~~~~~-~Gvlv~~~~~~-------------------------------~~~lrl 419 (451)
T PRK06918 381 QDRKT-K--------EPDKTLTANICKEANK-RGLLLLSAGTY-------------------------------GNVIRV 419 (451)
T ss_pred cCCCc-C--------CCcHHHHHHHHHHHHH-CCeEEeecCCC-------------------------------CCEEEE
Confidence 10100 0 0000113445555555 69998754211 268999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 501 SFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 501 s~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
++++..|+++++.++++|++++...
T Consensus 420 ~p~l~~t~~~id~~l~~l~~~l~~~ 444 (451)
T PRK06918 420 LMPLVITDEQLEEGLTIIEESLQAC 444 (451)
T ss_pred ECCCccCHHHHHHHHHHHHHHHHHH
Confidence 9988889999999999999988653
|
|
| >PRK06062 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.3e-11 Score=128.11 Aligned_cols=351 Identities=15% Similarity=0.081 Sum_probs=194.9
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++.... ..+.. ...+...++.+.|.+....+
T Consensus 42 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~-~~~~~------~~~~~~~~lae~L~~~~p~~ 111 (451)
T PRK06062 42 AEGSYVWDYEGR---RYLDFSSQLVNTNIGHQHPKVVAAIQEQAARLC-TVAPA------HANDARSEAARLIAERAPGD 111 (451)
T ss_pred ceeeEEEECCCC---EEEEcccCHHhhcCCCCCHHHHHHHHHHHHhcC-CcCCc------cCCHHHHHHHHHHHHhCCCC
Confidence 344555555554 49998654 5667899999998886531 11110 12344566777787877543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcCc-----------eE
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSLA-----------EV 205 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G~-----------~v 205 (609)
-+ .|.|+.||+.+ +...+++-. .. .| |..|+.-...||... ......+. .+
T Consensus 112 ~~-~v~f~~SGsEA-ve~AlklAr-------------~~-tg-r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~ 174 (451)
T PRK06062 112 LS-KVFFTNGGADA-NEHAVRMAR-------------LH-TG-RPKVLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGV 174 (451)
T ss_pred CC-EEEEcCChHHH-HHHHHHHHH-------------Hh-hC-CceEEEEeCCCCCCCHHHHhhcCCcccccCCCCCCCC
Confidence 33 89999888885 333333211 01 23 224655555555443 33322211 12
Q ss_pred EEEecCCCCC------CC-------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 206 VEIGLDDDGL------LD-------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 206 v~v~~~~~g~------ld-------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
..++...... -| +++|++.++.. ..+++..|++..+....|.+.| +++|.++|++||+++|+
T Consensus 175 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~iAaviiEPv~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~ 253 (451)
T PRK06062 175 VHFFGPFLYRSEFHATTEEEECERALAHLERVIELE-GPSTIAAILLESVPGTAGILVPPPGYLAGVRELCDRHGIVLIA 253 (451)
T ss_pred EEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhc-CCCceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEe
Confidence 2232211110 12 67788888531 1145778899999888899988 89999999999999999
Q ss_pred eccccCCcccccC---CCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCc-cCCCceEeeccccccccc
Q 038499 269 DFAASGPYVEIDV---RSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPST-CGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 269 D~A~~~~~~~id~---~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~-~ggg~v~~~~~~~~~~~~ 343 (609)
|+++++....-.+ .... -.+|++++ .|.+||.. .+|.+++++++ .+.+.... ..+.+
T Consensus 254 DEV~tGfGRtG~~~a~~~~g-v~PDi~t~--gK~lggG~~Pigav~~~~~i--~~~~~~~~~~~~~T------------- 315 (451)
T PRK06062 254 DEVMAGFGRTGKWFAIEHFG-VVPDLITF--AKGVNSGYVPLGGVAISEAI--AATFADRPYPGGLT------------- 315 (451)
T ss_pred eccccCCCcCcHHHHHHhcC-CCCCeeee--chhhhcCCcCcEEEEEcHHH--HHHhccCCCCCCCC-------------
Confidence 9997742111011 1111 14587766 49998742 47888889887 33332110 00111
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH-HHHHHHhC----CCCce-EEeCCCCCCCcceEEE
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYI-ERALERLL----PNQNI-KILGNTSTKRQAILSF 417 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~-~~~~~~L~----~~p~i-~v~~~~~~~r~~~~~f 417 (609)
..|.|...+...+.++.. +.. .+.++.+++. +++.+.|+ ..|.+ .+-+ ...++.+
T Consensus 316 ---------~~gnpl~~Aaa~a~L~~l--~~~---~l~~~~~~~G~~~l~~~L~~l~~~~~~v~~vrG-----~Gl~~gv 376 (451)
T PRK06062 316 ---------YSGHPLACAAAVATINAM--EEE---GIVENAARIGAEVLGPGLRELAERHPSVGEVRG-----LGVFWAL 376 (451)
T ss_pred ---------CCCCHHHHHHHHHHHHHH--Hhc---CHHHHHHHHHHHHHHHHHHHHHhcCCcEEeEec-----cccEEEE
Confidence 123444444445555544 222 2344444444 34444443 34322 2222 1223333
Q ss_pred EeccCCCCCcCCCCCCCCCCCCC--------ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhC
Q 038499 418 NIHSSTINSSLGENTKTETDKPL--------HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKG 489 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l--------~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~ 489 (609)
.+.. +.. ...++ ....+.+.|.+ .||.+.+.
T Consensus 377 e~~~-~~~----------~~~~~~~~~~~~~~~~~~~~~l~~-~Gvl~~~~----------------------------- 415 (451)
T PRK06062 377 ELVA-DRE----------TREPLAPYGASSAAMAAVKAACKE-RGLLPFVN----------------------------- 415 (451)
T ss_pred EEcc-ccc----------ccCCCcccchhhHHHHHHHHHHHH-CCcEEeec-----------------------------
Confidence 3322 100 00001 13456667755 58886520
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 490 ~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.+.+|+++++.+|++|+++++++++++++..
T Consensus 416 -----~~~lrl~ppl~~t~~eid~~~~~l~~~l~~~ 446 (451)
T PRK06062 416 -----GNRIHVVPPCTVTEDEVREGLAILDAALAVA 446 (451)
T ss_pred -----CCEEEEECCccCCHHHHHHHHHHHHHHHHHh
Confidence 2579999999999999999999999988754
|
|
| >PRK13360 omega amino acid--pyruvate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=3.8e-11 Score=130.46 Aligned_cols=364 Identities=13% Similarity=0.061 Sum_probs=199.4
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++....-.+.. + ..++...++.+.+++.+...
T Consensus 35 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~l~~~~~~-----~-~~~~~~~~la~~l~~~~p~~ 105 (442)
T PRK13360 35 AKGMYYTTHDGR---RVLDGTAGLWCVNAGHGRPEIVEAVRAQAGELDYAPAF-----Q-MGHPKAFELANRIAEIAPGG 105 (442)
T ss_pred eeeeEEEeCCCC---EEEECchhHHHhccCCCCHHHHHHHHHHHHhCCCcccC-----C-cCCHHHHHHHHHHHHhCCCC
Confidence 556677777775 39998654 677899999999888653111110 0 11233456777788877533
Q ss_pred CCCcEEEeCChHHHHHHHHHHH-hcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHc---------C---c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEV-MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQS---------L---A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~---------G---~ 203 (609)
-+ .|.|+.|||++ +...+++ .... ..-..+.|..|+.-...||.... ++... + .
T Consensus 106 ~~-~v~f~~sGseA-~e~AlklAr~~~----------~~~g~~~r~~ii~~~~~yHG~t~gals~tg~~~~~~~~~~~~~ 173 (442)
T PRK13360 106 LN-HVFFTNSGSES-VDTALKIALAYH----------RARGEGSRTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLP 173 (442)
T ss_pred CC-EEEEeCCcHHH-HHHHHHHHHHHH----------HhcCCCCCcEEEEEcCCcCCccHhhhhccCChhhhhccCCCCC
Confidence 33 89999888886 3332222 1100 00011123356665556665432 22111 1 1
Q ss_pred eEEEEecCCC-----CC--------CCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeE
Q 038499 204 EVVEIGLDDD-----GL--------LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFA 266 (609)
Q Consensus 204 ~vv~v~~~~~-----g~--------ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~v 266 (609)
.+..+|...+ .. -.+++|++++... ..+++.+|++..+....|.+.| +++|.++|++||+++
T Consensus 174 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~aavivEpi~g~~G~~~~~~~fl~~lr~lc~~~g~ll 252 (442)
T PRK13360 174 GVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLH-DASTIAAVIVEPVAGSTGVLIPPKGYLQRLREICDKHGILL 252 (442)
T ss_pred CCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhc-CCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEE
Confidence 2333443211 00 0246778877531 1245678899999999999988 999999999999999
Q ss_pred EEecccc-CCcccc--cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccc
Q 038499 267 CFDFAAS-GPYVEI--DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342 (609)
Q Consensus 267 ivD~A~~-~~~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (609)
|+|+++. +|...- -..... -..|++++ .|.++|. ..+|.+++++++. +.+......+.
T Consensus 253 I~DEv~tG~GrtG~~~a~~~~g-v~PDivt~--gK~l~gG~~P~gav~~~~~i~--~~~~~~~~~~~------------- 314 (442)
T PRK13360 253 IFDEVITGFGRLGAPFAAQYFG-VTPDLLTC--AKGLTNGAIPMGAVFVSSEIH--DAFMQGPEAGI------------- 314 (442)
T ss_pred EEechhhCCCCCccchhhhhcC-CCCceeee--eeccccCccceEEEEEcHHHH--HHhhcCCcccc-------------
Confidence 9999984 432211 111110 13587765 5999753 2368888888873 22211000000
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceE-EEEecc
Q 038499 343 LYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAIL-SFNIHS 421 (609)
Q Consensus 343 ~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~-~f~~~~ 421 (609)
.++ ......|.|...+...+++..+ +. +.+.++.+++.+++.+.|+++.....+++. ...+.+ .+.+.+
T Consensus 315 ~~~---~~~T~~g~pl~~aaa~a~L~~l--~~---~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v--rG~Gl~~~~~l~~ 384 (442)
T PRK13360 315 EFF---HGYTYSGHPLACAAALATLDLY--ER---EGLLTRAARLAPYWEDALHSLRDAPHVIDI--RNLGLVGAVELAP 384 (442)
T ss_pred ccc---cCCCCCCCHHHHHHHHHHHHHH--Hh---CCHHHHHHHHHHHHHHHHHHhhcCCCeeee--eccceEEEEEEec
Confidence 000 0001123344444445555544 22 235566667777777777643221111111 111222 222222
Q ss_pred CCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEe
Q 038499 422 STINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRIS 501 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls 501 (609)
.. .+..-....+...|.+ .||.++.+ ...+|++
T Consensus 385 -~~-----------~~~~~~~~~~~~~l~~-~Gvl~~~~----------------------------------~~~lr~~ 417 (442)
T PRK13360 385 -RD-----------GKPGKRAYEVFLKCFE-KGLMIRYT----------------------------------GDILALS 417 (442)
T ss_pred -CC-----------CCcchhHHHHHHHHHH-CCcEEEec----------------------------------CCEEEEe
Confidence 10 0000123466666755 59987621 2579999
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Q 038499 502 FPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 502 ~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++.+|++|+|+++++|+++++.
T Consensus 418 Ppl~~t~~eid~~~~~l~~~l~~ 440 (442)
T PRK13360 418 PPLIIEEAQIDELFDILAQALKE 440 (442)
T ss_pred CCCccCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
|
| >PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1 | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-11 Score=130.43 Aligned_cols=311 Identities=20% Similarity=0.204 Sum_probs=168.0
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
.+.+.-+.+-+....++++.|.+....-+. .|++++-..+..+.. .....+..|+++...|+.+
T Consensus 104 isQG~Lq~lfe~Qs~i~eLTGmdvaNaSly--d~atA~aEa~~ma~r--------------~~~~~~~~vlv~~~~hP~~ 167 (429)
T PF02347_consen 104 ISQGRLQALFEYQSMICELTGMDVANASLY--DGATAAAEAMLMAVR--------------ATKRKRNKVLVPESLHPQT 167 (429)
T ss_dssp GBHHHHHHHHHHHHHHHHHHTSSEE-SEBS--SCCHHHHHHHHHHHH--------------HHTT---EEEEETTS-CHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCccCCCCC--ChhHHHHHHHHHHHH--------------hcccCCcEEEEcCCcChhh
Confidence 456677888899999999999974312223 345543333333221 1112223799999999999
Q ss_pred HHHHHH----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~~~~----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
....+. .|++++.++.++++..| . +++..|.+.+|+ ..|.+.|+++|++++|++|+++++ +
T Consensus 168 ~~v~~t~a~~~g~~iv~~~~~~~~~~d--------~-----~~~a~v~vq~Pn-~~G~~ed~~~i~~~~h~~gal~~~-~ 232 (429)
T PF02347_consen 168 RAVLRTYAAPLGIEIVEVPLDEDGTTD--------D-----DDTAAVMVQNPN-TFGVFEDIKEIADIAHAAGALVIV-G 232 (429)
T ss_dssp HHHHHHHCCHCCEEEEEE-BBTTCSB---------S-----TTEEEEEEESS--TTSB--THHHHHHHHHHTT-EEEE-C
T ss_pred HHHHHHhhhhCCeEEEEecccccCCcc--------c-----cCeEEEEeecCC-CCceEeeHHHHHHHHHHcCCEEEE-e
Confidence 875543 58999999988877766 3 688899998885 669999999999999999999887 6
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCCCCC-----CCcEEEEEechhhccCCCCCCccCCCceEeecc-cccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGP-----GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNG-FNEKDTLY 344 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp-----~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~-~~~~~~~~ 344 (609)
+.-.... + +++-...|+|+++.+ ||-||.| .+.|++.+++++ .+.++-...| -+++ .++ .......+
T Consensus 233 ad~~aL~-~-l~~Pge~GADI~vg~-~Q~fg~p~~~GGP~~G~~a~~~~l--~r~lPGRiVG-~t~D-~~G~~~~~ltLq 305 (429)
T PF02347_consen 233 ADPNALG-G-LKSPGEYGADIVVGE-HQTFGIPMGFGGPGAGFFAVREDL--VRQLPGRIVG-QTKD-ADGKRAFVLTLQ 305 (429)
T ss_dssp GGCCGCC-T-C--GGGGT-SEEEEC-CTTTT---CCC-S--EEEEE-GGG--GGGS-S-EEE-EEEB-CCCSCCEEEE-G
T ss_pred cCHHHHh-C-cCChhhcCccEEeeC-CCCCcccCCCCCCCeeeEEEhhhh--hhhCCCceec-cccc-ccccceeeeccc
Confidence 5221100 0 111112288999665 7777544 127999999998 4555433222 1111 000 00001111
Q ss_pred cccccccccCCChhHH-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEe
Q 038499 345 LEDIEERESGGTPQVI-----QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNI 419 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~-----~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~ 419 (609)
......|.+-.|.||. -.+++++-+......|+..+.++....+.|+.++|+++.++.+.++ .++-|++
T Consensus 306 tREQHIrReKAtSNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~~~~~~~~~------~f~e~v~ 379 (429)
T PF02347_consen 306 TREQHIRREKATSNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKIYGLPFDNP------FFFEFVV 379 (429)
T ss_dssp GGTCHHHGCCSTT---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTBECSSSS------SBSSEEE
T ss_pred cccccccccchhhhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCCC------Cceeeee
Confidence 1222233444555552 2223333333345678999999999999999999998744433221 3333333
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
.. . ....+.+ |.++ +|.-. . ...+. ..+.+-
T Consensus 380 ~~-~-----------------~~~~~~~-l~~~-~~~~g--l------~~~~~---------------------~~~~~l 410 (429)
T PF02347_consen 380 VF-S-----------------KDKEVEE-LLKR-GIEGG--L------NLRYP---------------------DDGALL 410 (429)
T ss_dssp EE-S-----------------S-HHHHH-HHHT-T------E------EEGGG----------------------SSEEE
T ss_pred ec-C-----------------CcHHHHH-HHHH-HHhcC--C------Ccccc---------------------CCCeEE
Confidence 33 1 1123333 3332 33221 0 00010 146899
Q ss_pred EecCCCCCHHHHHHHHHHH
Q 038499 500 ISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al 518 (609)
+++.--.|++|+|++++++
T Consensus 411 i~~TE~~t~edid~lv~~f 429 (429)
T PF02347_consen 411 ICVTETRTKEDIDRLVEAF 429 (429)
T ss_dssp EE--TT--HHHHHHHHH--
T ss_pred EEccCCCCHHHHHHHHhcC
Confidence 9999999999999999874
|
4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A. |
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.6e-11 Score=130.18 Aligned_cols=361 Identities=19% Similarity=0.178 Sum_probs=220.4
Q ss_pred ccCCCCCCc-hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeC-ChHHH---HHHHHHHHhcccchhhHHHHHHhhhcCC
Q 038499 105 YGNTHTCDS-YVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCG-SGTTA---AIKRLQEVMGIAVPSILREKLIKCLRDE 179 (609)
Q Consensus 105 ~~n~~~~~~-~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~-sGtta---al~~l~~~l~~~~~~~~~~~~~~~l~~g 179 (609)
++|.|.-.- ....+..++..++++.+.+..|.+ .+.|.+ +|+.. ++..+ ++... .-..|
T Consensus 565 fanIHPF~P~eQaqGY~~lf~~Le~~Lc~iTG~D---~~s~QPNsGA~GEYaGL~~I-RaY~~------------~kge~ 628 (1001)
T KOG2040|consen 565 FANIHPFAPVEQAQGYQQLFTELEKDLCEITGFD---SFSLQPNSGAQGEYAGLRVI-RAYLE------------SKGEG 628 (1001)
T ss_pred hccCCCCCchHHHhhHHHHHHHHHHHhheeeccc---ceeecCCCCcccchhhHHHH-HHHHH------------hccCC
Confidence 456665321 123345678888999999999985 556654 34433 33322 22210 12456
Q ss_pred CceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcccccc-CHHHHHHH
Q 038499 180 ERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYS-DTRSIARL 258 (609)
Q Consensus 180 d~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~-dl~~I~~l 258 (609)
-|.+.+++-..|..|-.++.+.|.+|+.|..+.+|.+|+.+|+++.+++. ++...+.++.|++. |+.. .+++++++
T Consensus 629 hRnvClIPvSAHGTNPASA~MagmkvvpV~~~~~G~id~~dLk~kaekh~--~~Laa~MvTYPST~-GvfE~~i~d~cd~ 705 (1001)
T KOG2040|consen 629 HRNVCLIPVSAHGTNPASAAMAGMKVVPVGCDANGNIDMVDLKAKAEKHK--DNLAALMVTYPSTH-GVFEEGIDDICDI 705 (1001)
T ss_pred cceeEEEeecccCCChhhHHhcCCEEEEeeccCCCCccHHHHHHHHHHhh--hhhheeEEeccccc-ccccccHHHHHHH
Confidence 67789999999999999999999999999999999999999999988643 45667788888755 7774 59999999
Q ss_pred HHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCC-----CCcEEEEEechhhccCCCCCCccCCCceEe
Q 038499 259 LHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGP-----GSPGILLMTKALYQLGSFPPSTCGGGTVNY 333 (609)
Q Consensus 259 a~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp-----~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~ 333 (609)
.|+||.-+..|+|.--..+.+ .+++ .-|.|+.-+..||.|.-| .|.|-+.+++.+. |..++...|..
T Consensus 706 iHehGGQVYlDGANMNAqVGl-c~pG-d~GaDV~HLNLHKTFcIPHGGGGPg~gPIgVK~HLa------pfLP~HpVvs~ 777 (1001)
T KOG2040|consen 706 IHEHGGQVYLDGANMNAQVGL-CRPG-DIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLA------PFLPSHPVVSP 777 (1001)
T ss_pred HHhcCCEEEecCCCccceecc-cCCc-cccccceeecccceeeecCCCCCCCCCccchhhhcc------ccCCCCCccCC
Confidence 999999999999843322222 1121 227899999999998322 3467788887772 22222111100
Q ss_pred ecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcc
Q 038499 334 VNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA 413 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~ 413 (609)
. ..+++.-... -..--.|+..|+.+..+-+.+. ...|...--+-..-+++|+.++|+..-.+-..+.. ..-.-
T Consensus 778 ~---~~~~~~~~gs-VsaaP~Gsa~ILpISwaYikmM--G~~GL~~as~~AiLNaNYMakRLe~hYkil~~~~~-~~vaH 850 (1001)
T KOG2040|consen 778 G---RPEDTSPVGS-VSAAPWGSALILPISWAYIKMM--GSGGLKDASKIAILNANYMAKRLESHYKILFRGEN-GLVAH 850 (1001)
T ss_pred C---CCCCCCCccc-eeccCCCcceeehhHHHHHHHh--cccccchhhHHHhhhhHHHHHHHhhccceeEecCC-cceee
Confidence 0 0000000000 0001124444555444444443 34455444444455688999999875333222221 11111
Q ss_pred eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
-|.+...+ -. ....+...+|+++|.| ||+-.-.-+. |
T Consensus 851 EFIlD~r~-fK-----------~~agieavDvAKRL~D-YgFHaPTmsw---P--------------------------- 887 (1001)
T KOG2040|consen 851 EFILDLRP-FK-----------KTAGIEAVDVAKRLMD-YGFHAPTMSW---P--------------------------- 887 (1001)
T ss_pred eeeeechh-hc-----------cccCCcHHHHHHHHHh-ccCCCCcccc---c---------------------------
Confidence 12222222 11 1234788999999987 7876543221 1
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHHHh------c--------ccccCCCcccccCCcee
Q 038499 494 KPGWTRISFPYYMSNEEFEFTLEALEFIAIY------G--------QRFLPLYNFNIKTGTWC 542 (609)
Q Consensus 494 ~~g~iRls~~~~~t~eeid~ll~al~~v~~~------~--------~~~~p~y~~~~~~~~w~ 542 (609)
-+|.+-|-..-.-+.+|+|++++++..+-++ | .++.|.-.-+..+..|-
T Consensus 888 V~gtLMIEPTESE~k~ElDRfcdAliSIreEI~~ie~G~~dk~~n~Lk~aPH~~~~v~s~~Wd 950 (1001)
T KOG2040|consen 888 VAGTLMIEPTESEDKAELDRFCDALISIREEIAQIEEGRQDKRNNPLKMAPHPLEDVTSDNWD 950 (1001)
T ss_pred cCCceEeccCccccHHHHHHHHHHHHHHHHHHHHHHccCCCcccCcccCCCCCHHHhhhhccC
Confidence 1467777777777899999999999776543 2 13556666667777776
|
|
| >KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.6e-11 Score=119.83 Aligned_cols=343 Identities=19% Similarity=0.210 Sum_probs=220.3
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhH-HHHHHHHHHHHHHHHHhCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQ-HTTNMVHEASNYIKKCLGG 136 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~-~~~~~~~e~r~~ia~~~g~ 136 (609)
+.+.++.+|-|++ |+|+-+. |-+.+.|.+++++.....+- .++ -..+...+..+.+.+++|.
T Consensus 48 a~g~~vwD~eGk~---ylDflsaysaVnqGhchpki~~aLqeq~~kLtl--------ssrafYnd~~~~f~~~vt~lf~~ 116 (427)
T KOG1402|consen 48 AKGSRVWDPEGKE---YLDFLSAYSAVNQGHCHPKIIKALQEQADKLTL--------SSRAFYNDVLGEFAEYVTKLFGY 116 (427)
T ss_pred cCCcEEECCCccc---hhhhhhhhhhcccCCCCHHHHHHHHHHHhHhhh--------hhHHHhhhhHHHHHHHHHHhcCc
Confidence 5668888998875 7776533 56789999999988875421 122 1356678889999999999
Q ss_pred CCCCcEEEeCChHHHHHHHH---HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH----------HHHHHcCc
Q 038499 137 GQEDAMIFCGSGTTAAIKRL---QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL----------LSWRQSLA 203 (609)
Q Consensus 137 ~~~~~vift~sGttaal~~l---~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~----------~~~~~~G~ 203 (609)
+ .|+-+.+|+.+ ...+ ++-++... +.+ |.++..|+.....+|+-. .+|+..|-
T Consensus 117 ~---kvlpmnTGaEa-~Eta~KLaR~wgy~~---------K~i-p~nka~il~~~~nFhGrT~~ais~s~d~ds~~~fgp 182 (427)
T KOG1402|consen 117 D---KVLPMNTGAEA-VETACKLARKWGYRK---------KNI-PKNKAKILSAENNFHGRTLGAISLSTDPDSWDGFGP 182 (427)
T ss_pred c---eeeecccchhH-HHHHHHHHHHHHHhh---------ccC-CccceeEEEecccccCceeeeEEecCCcchhhccCC
Confidence 5 67777778664 3333 33333211 112 333334554444444321 24544442
Q ss_pred ----eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCC
Q 038499 204 ----EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 204 ----~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~ 275 (609)
.+..||.+ |.++|+.+|++ ++...+.+...+..-|++.| ++++.++|.+|++++|.|+.|.+-
T Consensus 183 ~~P~~~~~v~Y~-----d~eale~~l~~----~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCtkynvl~I~DEvQTGl 253 (427)
T KOG1402|consen 183 FLPGVVDKVPYG-----DAEALEVALKS----PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCTKYNVLLIADEVQTGL 253 (427)
T ss_pred CCCCcceeeccC-----CHHHHHHHhcC----CCeeEEEeeccccccceEeCCchhHHHHHHHHHhhcEEEEehhhhhcc
Confidence 24455554 89999999986 67888999999999999987 788999999999999999998753
Q ss_pred ccc-----ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccc
Q 038499 276 YVE-----IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 276 ~~~-----id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (609)
... .|.... ..|++++. |.++|. .....++..+++ ...++|...|...
T Consensus 254 ~RTGk~la~d~env---~PDivilg--KalSGG~~Pvsavl~~~~i--m~~~~pgeHgsTy------------------- 307 (427)
T KOG1402|consen 254 ARTGKLLACDYENV---RPDIVILG--KALSGGVYPVSAVLADDDI--MLNIKPGEHGSTY------------------- 307 (427)
T ss_pred cccCcEEEeehhhc---CCCeEEEe--ccccCCeeeeEEEEecHHH--HhccCCCcccccc-------------------
Confidence 322 233222 56999886 888543 446777778888 4456665443222
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce--EEeCCCCCCCcceEEEEeccCCCCCc
Q 038499 350 ERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI--KILGNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 350 ~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i--~v~~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
.|.|--....-|+++.. -.+.+.++...+.+.++.+|.+++.= .++... ..|.-+....+.+ .
T Consensus 308 ----ggNpLg~~vaiAalevi-----~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~V-RGrGl~~ai~i~~-~---- 372 (427)
T KOG1402|consen 308 ----GGNPLGCAVAIAALEVI-----VEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEV-RGRGLLNAIVINP-S---- 372 (427)
T ss_pred ----CCChHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHhccccccchhhee-eccceEEEEEecc-c----
Confidence 23333333334555544 34678889999999999999876421 011111 1132333333433 1
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC
Q 038499 428 LGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS 507 (609)
Q Consensus 428 ~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t 507 (609)
.....+..+++-.|.+ .|..+. |+ | ...||++.+..++
T Consensus 373 --------~~~~~~aw~~cl~lk~-~g~LAk-------pt-H-------------------------~~IiRfaPPL~I~ 410 (427)
T KOG1402|consen 373 --------KTSGQDAWDVCLALKE-NGLLAK-------PT-H-------------------------GNIIRFAPPLVIS 410 (427)
T ss_pred --------cccchhHHHHHHcccc-cccccC-------CC-C-------------------------CCeEEecCCcccC
Confidence 1222456677777755 477665 21 2 3689999999999
Q ss_pred HHHHHHHHHHHHHHHH
Q 038499 508 NEEFEFTLEALEFIAI 523 (609)
Q Consensus 508 ~eeid~ll~al~~v~~ 523 (609)
++|++.-+++|+..+.
T Consensus 411 e~dl~eg~e~i~k~i~ 426 (427)
T KOG1402|consen 411 EEDLREGIEAIEKTIA 426 (427)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999988753
|
|
| >PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.7e-11 Score=124.69 Aligned_cols=317 Identities=17% Similarity=0.152 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH---hcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEV---MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~---l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
..+.+.++|+..++++|.+++ +|+..||.+...+.-++.. .|.... .+-|...++...+++-+.|--..
T Consensus 67 ~l~Gipe~r~l~a~llgv~~~-~viv~gNSSL~lM~d~i~~a~~~G~~~~-------~~PW~~~~~vKfLCPvPGYDRHF 138 (425)
T PF12897_consen 67 GLDGIPEARELFAELLGVPPE-NVIVGGNSSLNLMHDTISRAMLHGVPGS-------ETPWCKEEKVKFLCPVPGYDRHF 138 (425)
T ss_dssp -SS--HHHHHHHHHHHTS-GG-GEEE-SS-HHHHHHHHHHHHHHH--TT--------SS-GGGSS--EEEEEES--HHHH
T ss_pred ccCChHHHHHHHHHHhCCCHH-HEEEeccchHHHHHHHHHHHHhcCCCCC-------CCCchhccCceEEecCCCchHHH
Confidence 345588999999999999998 8998877666544433221 121100 01133445557888888887777
Q ss_pred HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce-EEEEecccCccccccCHHHHHHHHH----HhCCeEEEec
Q 038499 196 LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI-LGSFSACSNVTGIYSDTRSIARLLH----QYGGFACFDF 270 (609)
Q Consensus 196 ~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~-lv~~s~~sn~TG~~~dl~~I~~la~----~~g~~vivD~ 270 (609)
..++..|++.+.||++++| .|++.+++.+.++ +..| +.++.--+||||+++.-+-+.+++. ..+..++||.
T Consensus 139 ai~E~~Giemi~VpM~~dG-PDmD~Ve~LV~~D---~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~WDN 214 (425)
T PF12897_consen 139 AITEHFGIEMIPVPMTEDG-PDMDMVEELVAED---PSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIFWDN 214 (425)
T ss_dssp HHHHHCT-EEEEEEEETTE-E-HHHHHHHTHTS---TTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEEEE-
T ss_pred HHHHhhCcEEEecCCCCCC-CCHHHHHHHHhcC---CccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEEeec
Confidence 8888999999999999988 6999999998653 5667 8888999999999998666666653 4689999999
Q ss_pred cccCCcccccC--CC----------CCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccc
Q 038499 271 AASGPYVEIDV--RS----------GQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFN 338 (609)
Q Consensus 271 A~~~~~~~id~--~~----------~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~ 338 (609)
|+++-+..-+. .. .+..+.-+++.|.+|.-....|++++..+++. +..+...
T Consensus 215 AY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~GaGva~~aaS~~N--l~~~~~~-------------- 278 (425)
T PF12897_consen 215 AYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGAGVAFFAASEAN--LAWIKKH-------------- 278 (425)
T ss_dssp TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTSS-EEEEE-HHH--HHHHHHH--------------
T ss_pred CceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCcceeeeecCHHH--HHHHHHH--------------
Confidence 98875541111 10 01123457788999998755678898888776 2221100
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHH--------HHHHHHHhC-CCCceEEeCCCC
Q 038499 339 EKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYI-GHEVIKKQEETY--------IERALERLL-PNQNIKILGNTS 408 (609)
Q Consensus 339 ~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~-g~~~i~~~~~~l--------~~~~~~~L~-~~p~i~v~~~~~ 408 (609)
-.....| |+-+..++-+ .|+ ++.. |++.-.+++.++ .+.+.+.|. .. ++--+..+
T Consensus 279 ----------~~~~tIg-pdKvNQLRHv-rff-~d~~gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~-~ia~Wt~P- 343 (425)
T PF12897_consen 279 ----------LSVQTIG-PDKVNQLRHV-RFF-KDAEGGVRAHMRKHAAILRPKFEAVLEILEEELGDGL-GIASWTKP- 343 (425)
T ss_dssp ----------HHHH-S----HHHHHHHH-HHH-HSHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG-TSEEE----
T ss_pred ----------hcCceeC-ccHHHHHHHH-HHh-cChhhHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC-CeeEecCC-
Confidence 0001112 2222222322 222 2333 443333332222 334455565 32 34333321
Q ss_pred CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhh
Q 038499 409 TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQK 488 (609)
Q Consensus 409 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~ 488 (609)
...-+++|.+.+ + ....++++..+ .||.+.+-.+.- ||+...
T Consensus 344 -~GGYFIsld~~~-G-----------------~AkrvV~lake-AGV~LT~AGAtf-Pyg~DP----------------- 385 (425)
T PF12897_consen 344 -KGGYFISLDVLD-G-----------------TAKRVVELAKE-AGVALTPAGATF-PYGKDP----------------- 385 (425)
T ss_dssp -SBSS-EEEEEST-T------------------HHHHHHHHHH-TTEE---TTTTS-GGG--T-----------------
T ss_pred -CCceEEEEecCC-C-----------------hHHHHHHHHHH-hCceeCCCCCCC-CCCCCC-----------------
Confidence 234567787877 3 47888888855 699998733333 677643
Q ss_pred CCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 489 GYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 489 ~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.+..|||+.. |-+.+|++..++.+.-.+
T Consensus 386 -----~D~nIRiAPS-~P~leel~~Am~~~~~cv 413 (425)
T PF12897_consen 386 -----RDSNIRIAPS-YPSLEELETAMDVFATCV 413 (425)
T ss_dssp -----TS-EEEE--S-SS-HHHHHHHHHHHHHHH
T ss_pred -----CCCcEEecCC-CCCHHHHHHHHHHHHHHH
Confidence 2478999986 468999999888876654
|
; PDB: 3D6K_C 3EZ1_A 3PPL_B. |
| >PRK07482 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.1e-10 Score=127.43 Aligned_cols=367 Identities=15% Similarity=0.083 Sum_probs=198.6
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|++ |+|..++ |-..+.|.+++.+++.... ..+.. ....++...++.+.|.+.+..+
T Consensus 39 a~G~~l~D~dG~~---ylD~~sg~~~~~lGh~~p~v~~Av~~q~~~~~-~~~~~----~~~~~~~~~~lAe~L~~~~p~~ 110 (461)
T PRK07482 39 GEGIRITDAQGRR---YIDAFAGLYCVNVGYGRTEVAEAIAEQAKELA-YYHTY----VGHGTEASITLSKRIIDRAPAG 110 (461)
T ss_pred eeeeEEEECCCCE---EEEcccchhhhcCCCCCHHHHHHHHHHHHhcC-ccccc----cccCCHHHHHHHHHHHHhCCCC
Confidence 5556777777753 9998766 5667899999999887531 11110 0112345566777788877543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-H--------HH-cC---ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-W--------RQ-SL---AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~--------~~-~G---~~ 204 (609)
-+ .+.|+.|||++ +...+++.-. .. ...-.++ |..|+.-...||..... . +. .+ ..
T Consensus 111 ~~-~v~f~~sGSEA-ve~AlKlAr~-~~-------~~~g~~~-r~~Ii~~~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~ 179 (461)
T PRK07482 111 MS-KVYYGLSGSDA-NETQIKLVWY-YN-------NVLGRPE-KKKIISRWRGYHGSGVVTGSLTGLSLFHQHFDLPIAR 179 (461)
T ss_pred cC-EEEEeCchHHH-HHHHHHHHHH-HH-------HhcCCCC-CceEEEecCccCCccHhhhhccCCchhhhccCCCCCC
Confidence 33 89999888886 3333332200 00 0000122 33566666666653321 1 11 01 12
Q ss_pred EEEEecCC--C----C-------CCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 205 VVEIGLDD--D----G-------LLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 205 vv~v~~~~--~----g-------~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
+..++... . + .-++++|++.+.+. ..+++..|++..+....|.+.+ +++|.++|++||+++|
T Consensus 180 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~iAAvi~EPvqg~gG~~~~~~~yl~~lr~lc~~~giLlI 258 (461)
T PRK07482 180 VLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAE-GPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLI 258 (461)
T ss_pred CEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhc-CCCcEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHhCCEEE
Confidence 22332221 1 0 01467778777421 1145778888888888888865 6789999999999999
Q ss_pred EeccccCC-ccc--ccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 268 FDFAASGP-YVE--IDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 268 vD~A~~~~-~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+|+++.+. -.. .-....+ -.+|+++++ |.++|.. .+|.+++++++. +.+.......+...
T Consensus 259 ~DEV~tGfGRtG~~~a~~~~g-v~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~--~~~~~~~~~~~~~~----------- 322 (461)
T PRK07482 259 ADEVVTGFGRLGSMFGSDHYG-IEPDLITVA--KGLTSAYAPLSGSIVGEKVW--DVLEQGSDEHGAIG----------- 322 (461)
T ss_pred EeccccCCCcCcchhhHHhcC-CCCCEEEEc--cccccCccccceeeecHHHH--HHHhcccccCCccc-----------
Confidence 99996642 211 0011110 145999986 9997753 578888888873 22211000000000
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC----CCCce-EEeCCCCCCCcceEEEE
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL----PNQNI-KILGNTSTKRQAILSFN 418 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~----~~p~i-~v~~~~~~~r~~~~~f~ 418 (609)
...-..|.|--.+...+.++.+ +. +.+.++.+++.+++.+.|. +.|.+ .+.+ +..++.+.
T Consensus 323 -----h~~T~~gnpl~~Aaa~a~L~~~--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~vrG-----~Glm~gie 387 (461)
T PRK07482 323 -----HGWTYSGHPICAAAALANLDIL--ER---ENLVGNAAEVGAYFRARLRAAFGDHPLVGEVRG-----VGMLAAVE 387 (461)
T ss_pred -----cCCCCCcCHHHHHHHHHHHHHH--Hh---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEee-----ceeEEEEE
Confidence 0000123333333334444443 22 2344455555555555554 44432 2222 22333333
Q ss_pred eccCCCCCcCCCCCCCCCCCCCC-----hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 419 IHSSTINSSLGENTKTETDKPLH-----GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
+.. +. ....+.+ ...+...+.+ .||.++.+.
T Consensus 388 l~~-~~----------~~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~~-------------------------------- 423 (461)
T PRK07482 388 FVA-DR----------DDRTPFDPALKIGPQVSAAALE-RGVIARAMP-------------------------------- 423 (461)
T ss_pred ecc-CC----------CcCCCCChhhHHHHHHHHHHHH-CCcEEecCC--------------------------------
Confidence 322 10 0000111 2456666765 598876321
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 494 KPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 494 ~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
....+|+.+++.+|++|+++++++++++++..
T Consensus 424 ~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~~~ 455 (461)
T PRK07482 424 HGDILGFAPPLVLTRAEADEIVAIAKDAVDEV 455 (461)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 02579999999999999999999999988764
|
|
| >PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-11 Score=125.48 Aligned_cols=210 Identities=15% Similarity=0.143 Sum_probs=132.9
Q ss_pred CCCccccCCCCCCceEEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..+ .|-..+.|.+++.+++.... +....+ ..+...++.+.++++.+.
T Consensus 13 ~~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~ql~~~~---~~~~~~----~~~~~~~la~~l~~~~~~- 81 (364)
T PRK04013 13 GEGIYVWDSQGR---RYLDLIAGIGVNVLGHNHPEWVEEMSEQLEKLV---VAGPMF----EHEEKEEMLEELSKWVNY- 81 (364)
T ss_pred eecCEEEECCCC---EEEEcccChhhccCCCCCHHHHHHHHHHHHhcC---CccCCc----CCHHHHHHHHHHHhhcCC-
Confidence 455666666665 3888754 35667889999999887542 111111 134456677888888764
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH--------cCc-----e
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ--------SLA-----E 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~--------~G~-----~ 204 (609)
+.++|+.|||.+ +...+++.. ..+| +..|++....||+....... .+. .
T Consensus 82 --~~v~~~~SGseA-~e~Alklar--------------~~~g-r~~Ii~~~~syHG~t~~~ls~~~~~~~~~~~~p~~~~ 143 (364)
T PRK04013 82 --EYVYMGNSGTEA-VEAALKFAR--------------LYTG-RKEIIAMTNAFHGRTMGALSATWKPKYREDFEPLVPG 143 (364)
T ss_pred --CEEEEeCchHHH-HHHHHHHHH--------------HHhC-CCEEEEECCccccCchhhccCCCCcccccCCCCCCCC
Confidence 378999788775 554444432 1133 22577777767765422211 111 2
Q ss_pred EEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcccccc-C---HHHHHHHHHHhCCeEEEeccccCCccc--
Q 038499 205 VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYS-D---TRSIARLLHQYGGFACFDFAASGPYVE-- 278 (609)
Q Consensus 205 vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~-d---l~~I~~la~~~g~~vivD~A~~~~~~~-- 278 (609)
+..++.+ |++++++.+. +++..+++.......|.+. | +++|.++|++||+++|+|+++++-...
T Consensus 144 ~~~~~~~-----d~~~l~~~i~-----~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~~gillI~DEv~tG~RtG~~ 213 (364)
T PRK04013 144 FKHIPFN-----DVEAAKEAIT-----KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGLRTGKF 213 (364)
T ss_pred cEEecCC-----CHHHHHHHhc-----CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhcCCCCch
Confidence 3333332 6888998887 5788999998888878765 4 889999999999999999997742111
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
...... .-..|+++++ |.+||...+|.++.++++
T Consensus 214 ~a~~~~-gv~PDiv~~g--K~lggG~P~~a~~~~~~~ 247 (364)
T PRK04013 214 LAIEHY-KVEPDIVTMG--KGIGNGVPVSLTLTNFDV 247 (364)
T ss_pred hHHHhc-CCCCCEEEec--ccccCCceeEEEEecccc
Confidence 011111 0145888875 999875557777777665
|
|
| >PRK06105 aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.2e-10 Score=127.24 Aligned_cols=373 Identities=13% Similarity=0.073 Sum_probs=200.7
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|++ |+|..++ |-.++.|.+++.+++... ...+.. +........++.+.|.+.+..+
T Consensus 37 a~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~-~~~~~~----~~~~~~~~~~lae~L~~~~p~~ 108 (460)
T PRK06105 37 GEGIYVYDDAGKR---YIEGMAGLWSVALGFSEQRLVEAAARQMKKL-PFYHTF----SHKSHGPVIDLAEKLVAMAPVP 108 (460)
T ss_pred eeEEEEEECCCCE---EEEcchhHHhccCCCCCHHHHHHHHHHHHhC-CCeecc----cccCCHHHHHHHHHHHHhCCCC
Confidence 4556666667753 9997654 456789999999988653 111110 0012344566778888887543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc-hHHHHHHcC------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS-NLLSWRQSL------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~~~~G------------~~ 204 (609)
-+ .|.|+.||+.+ +...+++.-. .. . .+ -.++.+ .|+.-...||+ ...++...+ ..
T Consensus 109 ~~-~v~f~~SGseA-ve~AlKlar~-~~---~---~~-g~t~r~-~il~~~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~ 177 (460)
T PRK06105 109 MS-KVFFTNSGSEA-NDTVVKLVWY-YN---N---AL-GRPEKK-KIISRQRGYHGVTIASASLTGLPNNHRSFDLPLDR 177 (460)
T ss_pred CC-EEEEeCCcHHH-HHHHHHHHHH-HH---H---hc-CCCCCc-EEEEecCccCCcchhheeccCCcccccccCCCCCC
Confidence 33 89999888886 3333333100 00 0 00 012332 45554444544 333222111 11
Q ss_pred EEEEecCCCCC-------------CCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 205 VVEIGLDDDGL-------------LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 205 vv~v~~~~~g~-------------ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
+..++...... ..++++++.+.. ...+++..|++.......|.+.+ +++|.++|++||+++|
T Consensus 178 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~-~~~~~iAavIvEPiqg~gG~~~~~~~yl~~lr~lc~~~~~llI 256 (460)
T PRK06105 178 ILHTGCPHYYRFGLPGESEEAFATRLANELEALILA-EGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLV 256 (460)
T ss_pred CEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHH-cCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCeEE
Confidence 22232211000 124667777742 11146778889888888899887 8999999999999999
Q ss_pred Eecccc-CCcccc--cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 268 FDFAAS-GPYVEI--DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 268 vD~A~~-~~~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+|+++. +|-..- -..... -.+|+++++ |.+||. ..+|.+++++++. +.+.+.....+...
T Consensus 257 ~DEv~tG~GRtG~~f~~~~~~-v~PDi~~~g--K~lggG~~P~~av~~~~~i~--~~~~~~~~~~~~~~----------- 320 (460)
T PRK06105 257 ADEVICGFGRTGNMFGCETFG-IKPDILVMS--KQLSSSYQPLSAVLMNEKVY--DPIADESGKIGTFG----------- 320 (460)
T ss_pred EeccccCCCcCchhhhHHhcC-CCCCeeeee--cccccCcccceEEEEcHHHH--HHHhcccccCcccc-----------
Confidence 999974 432210 011110 145888765 999864 2478889998873 22221100000000
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCC
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSST 423 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~ 423 (609)
...-..|.|-......+.++... .+.+.++.+++.+++.+.|+++....+++.. ..+..++.+.+.. +
T Consensus 321 -----h~~T~~gnpl~~aaa~a~L~~i~-----~~~l~~~v~~~g~~l~~~L~~l~~~~~v~~v-rG~Gl~~gie~~~-~ 388 (460)
T PRK06105 321 -----HGFTASGHPVAAAVALENLAIIE-----ERDLVGNAAERGARLQARLRALADHPLVGEV-RGVGLIAAVELVA-D 388 (460)
T ss_pred -----cCCCCCCCHHHHHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHHHHhhcCCCeEEE-EecceEEEEEEec-C
Confidence 00011234444444445555542 2245566666677776666554221111110 0122333333322 1
Q ss_pred CCCcCCCCCCCCCCCCC----ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 424 INSSLGENTKTETDKPL----HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l----~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
.. .+..+. ....+...+.+ .||.+.+. .+.+|
T Consensus 389 ~~---------~~~~~~~~~~~a~~i~~~~~~-~Gvl~~~~----------------------------------g~~i~ 424 (460)
T PRK06105 389 KA---------TKTPFEPPGKVGARANAAAHE-HGVISRAM----------------------------------GDTLA 424 (460)
T ss_pred cc---------cCCCCCchhHHHHHHHHHHHH-CCeEEEec----------------------------------CCEEE
Confidence 00 000000 12356666655 58887621 15799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhcccc
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIAIYGQRF 528 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~~~~~~~ 528 (609)
+++++..|++|++++++++.++++....+
T Consensus 425 l~Ppl~it~~eid~~~~~l~~~l~~~~~~ 453 (460)
T PRK06105 425 FCPPLIITAAQVDEMVDRFGRALDDVAAW 453 (460)
T ss_pred EECCCccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998776543
|
|
| >PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-10 Score=123.06 Aligned_cols=361 Identities=16% Similarity=0.160 Sum_probs=197.0
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|++ |+|..++ |-..+.|.+++.+++.... ..... + .......++.+.+.+.++..
T Consensus 43 a~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~-~~~~~----~-~~~~~~~~lAe~L~~~~p~~ 113 (453)
T PRK06943 43 GEGAWLYDRDGRR---YLDAISSWWVNLFGHANPRINAALKDQLDTLE-HAMLA----G-CTHEPAIELAERLAALTGGT 113 (453)
T ss_pred cccCEEEeCCCCE---EEEcchHHHHhcCCCCCHHHHHHHHHHHHhcC-Ccccc----c-cCCHHHHHHHHHHHHhCCCC
Confidence 5566677777753 9998654 6678999999999886531 11110 0 11234456777777777643
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------~~ 204 (609)
-+ .+.|+.+||.+ +...+++-- .. +..+ -.++ +..|+.-...||+.. .++...| ..
T Consensus 114 ~~-~v~f~~sGseA-ve~AlKlA~-~~---~~~r----g~~~-r~~Ii~~~~~yHG~t~gals~~~~~~~~~~~~~~~~~ 182 (453)
T PRK06943 114 LG-HAFFASDGASA-VEIALKMSF-HA---WRNR----GRGD-KREFVCLANGYHGETIGALGVTDVALFKDAYDPLIRH 182 (453)
T ss_pred CC-EEEEeCCCHHH-HHHHHHHHH-HH---HHHh----CCCC-CCEEEEECCCcCCCcHHhhcccCChhhhcccccCCCC
Confidence 33 79999888886 333322210 00 0000 0123 335666666666543 2222111 12
Q ss_pred EEEEecCCC-C-----------CCCHHHHHHHHhhhccCCCceEEEEec-ccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 205 VVEIGLDDD-G-----------LLDIEALRSKLELYKDAKRPILGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 205 vv~v~~~~~-g-----------~ld~e~L~~al~~~~~~~~~~lv~~s~-~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
+..++.... + .-+++++++.+..+ .+++..|++.. ++...|.+.+ ++++.++|++||+++|
T Consensus 183 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~iAAviiEPvvqg~gG~~~~~~~yl~~lr~lc~~~gillI 260 (453)
T PRK06943 183 AHVVASPDARGARPGETAADVAARALADVRRLFAER--AGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLI 260 (453)
T ss_pred CEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhC--CCceEEEEEeccccccCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 333432211 0 01356777777632 24677888887 4777888765 6789999999999999
Q ss_pred EeccccC-Ccccc--cCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 268 FDFAASG-PYVEI--DVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 268 vD~A~~~-~~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+|+++.+ |-... -....+ -..|+++++ |.++|.. .+|.+++++++. +.+.+....+.
T Consensus 261 ~DEV~TG~GRtG~~fa~~~~g-v~PDivt~g--Kgl~gG~~Pi~av~~~~ei~--~~~~~~~~~~~-------------- 321 (453)
T PRK06943 261 ADEIAVGCGRTGTFFACEQAG-VWPDFLCLS--KGISGGYLPLSLVLSRDAIF--AAFYDDDVTRG-------------- 321 (453)
T ss_pred eechhhCCCCCcchhHHHhCC-CCCCeEeee--hhhccCcccceEEEEcHHHH--HhhcccCccCC--------------
Confidence 9999653 32211 001110 146999886 9998763 589999999883 33321100000
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC---CCceE-EeCCCCCCCcceEEEEe
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP---NQNIK-ILGNTSTKRQAILSFNI 419 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~---~p~i~-v~~~~~~~r~~~~~f~~ 419 (609)
+. ...-..|.|--.....+.++.+ +. +.+.++.+++.+++.+.|++ .+.+. +-+ +..++.+.+
T Consensus 322 ~~---~~~T~~gnpl~~aaa~a~L~~i--~~---~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG-----~Gl~~gvel 388 (453)
T PRK06943 322 FL---HSHSYTGNPLACRAALATLDLF--AE---DDVLARNARKSARLRAALAPLAAHPQVRHLRQ-----RGTIFAFDV 388 (453)
T ss_pred cc---CCCCCCCCHHHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHhcCCCEEeEec-----cccEEEEEE
Confidence 00 0000123333333334444443 22 23445555555666655543 34432 222 223333333
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
..+.. .. .-....+.+.+.+ .||.+.+. ...+|
T Consensus 389 ~~~~~-----------~~-~~~~~~i~~~~~~-~Gll~~~~----------------------------------g~~l~ 421 (453)
T PRK06943 389 ALDGD-----------AA-RTFSRRFFEAALE-RELLLRPI----------------------------------GTTVY 421 (453)
T ss_pred ccCCC-----------cc-hHHHHHHHHHHHH-CCcEEEec----------------------------------CCEEE
Confidence 32010 00 0013456666655 58887621 14689
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
++++.-+|++|+++++++|+++++..
T Consensus 422 ~~Ppl~it~~eid~~~~~l~~al~~~ 447 (453)
T PRK06943 422 LMPPYVLDDDEIAWLAERTRATLDAT 447 (453)
T ss_pred EeCCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988653
|
|
| >PRK07036 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.8e-11 Score=128.37 Aligned_cols=369 Identities=12% Similarity=0.070 Sum_probs=195.4
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++....-... .+....+...++.+.+.+.+..+
T Consensus 40 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~-----~~~~~~~~~~~lae~L~~~~p~~ 111 (466)
T PRK07036 40 AEGIYVTDADGR---RYLDGIGGMWCVNVGYGREEMADAIADQARRLPYYTP-----FGDMTNAPAAELAAKLAELAPGD 111 (466)
T ss_pred CceeEEEECCCC---EEEECcccHHhhcCCCCCHHHHHHHHHHHHhCccccc-----ccccCCHHHHHHHHHHHHhCCCC
Confidence 445566666665 49998655 66778999999988864311110 00012334556777777776543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------~~ 204 (609)
-+ .|.|+.|||++ +...+++-- ... .. + -+++ |..|+.-...||... ......+ ..
T Consensus 112 ~~-~v~f~~sGseA-ve~AlklAr-~~~---~~---~-g~t~-r~~Ii~~~~~YHG~t~~a~s~~~~~~~~~~~~~~~~~ 180 (466)
T PRK07036 112 LN-HVFLTTGGSTA-VDSALRFVH-YYF---NV---R-GRPA-KKHIITRGDAYHGSTYLTASLTGKAADRTEFDYASDL 180 (466)
T ss_pred cC-EEEEeCCchHH-HHHHHHHHH-HHH---Hh---c-CCCC-ccEEEEEcCccCCccHhhhcccCCCcccccccCCCCC
Confidence 33 89999888885 333322210 000 00 0 0122 335665555555433 2222111 11
Q ss_pred EEEEecCCC----CCC--------CHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 205 VVEIGLDDD----GLL--------DIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 205 vv~v~~~~~----g~l--------d~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
+..++.... ... .++.+++.+.. ...+++..|++..+....|.+.| +++|.++|++||+++|+
T Consensus 181 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~iAavi~EPv~g~gG~~~p~~~yl~~lr~lc~~~g~llI~ 259 (466)
T PRK07036 181 VHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILS-LGADNIAAFIAEPILGSGGVIVPPPGYHARMREICRRYDILYIS 259 (466)
T ss_pred cEEecCCcccccccCCChHHHHHHHHHHHHHHHHH-cCCCceEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 333332210 011 13445555542 12246778899999888899887 88999999999999999
Q ss_pred eccccC-Cccc--ccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 269 DFAASG-PYVE--IDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 269 D~A~~~-~~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
|+++.+ |-.. .-+.....-.+|+++++ |.++|.. .+|.+++++++. +.+.+....+.. +
T Consensus 260 DEV~tGfGRtG~~~~~~~~~gv~PDivt~g--K~l~gG~~Pi~av~~~~~i~--~~~~~~~~~~~~-------------~ 322 (466)
T PRK07036 260 DEVVTGFGRLGHFFASEAVFGIQPDIITFA--KGLTSGYQPLGAVIISERLL--DVISGPNAKGNV-------------F 322 (466)
T ss_pred eechhCCCcCchhhhhhhhcCCCCCEEEEc--cccccCccccEEEEEcHHHH--HHHhcccCcCcc-------------c
Confidence 999753 3221 11110000145888775 9998752 479999998883 332211000000 0
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC---Cce-EEeCCCCCCCcceEEEEec
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN---QNI-KILGNTSTKRQAILSFNIH 420 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~---p~i-~v~~~~~~~r~~~~~f~~~ 420 (609)
. ...-..|.|-..+...+.++.+ + .+.+.++.+++.+++.+.|+.+ |.+ ++.+ ...++.+.+.
T Consensus 323 ~---~~~T~~gnpl~~aaa~a~Le~i--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~v~~vrG-----~Gl~~~ve~~ 389 (466)
T PRK07036 323 T---HGFTYSGHPVACAAALKNIEIM--E---REGLCEHVREVGPYFEERLASLRELPLVGDVRG-----DHLMACVECV 389 (466)
T ss_pred c---cCCCCCCCHHHHHHHHHHHHHH--H---hCCHHHHHHHHHHHHHHHHHHhccCCCEEEEEe-----eceEEEEEEc
Confidence 0 0000123343333334444443 2 2235556666666666666443 322 1222 2233333332
Q ss_pred cCCCCCcCCCCCCCCCCCCC----ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 421 SSTINSSLGENTKTETDKPL----HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l----~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
. +. +.++... ....+...+.+ .||.+++. .+
T Consensus 390 ~-~~---------~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~----------------------------------~~ 424 (466)
T PRK07036 390 A-DK---------GSKALLPEDIAIGQRIDRHCQE-RGLLVRPL----------------------------------EH 424 (466)
T ss_pred c-Cc---------cccCCCCchhHHHHHHHHHHHH-CCcEEeec----------------------------------CC
Confidence 2 10 0000000 12456666655 58887621 14
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 497 WTRISFPYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
.+|+++++.+|++|++++++++.++++...+
T Consensus 425 ~~~l~Ppl~it~~~id~~~~~l~~al~~~~~ 455 (466)
T PRK07036 425 LCVLSPPLIITRAQIDEIVAILRAAIEETAD 455 (466)
T ss_pred EEEEeCCCcCCHHHHHHHHHHHHHHHHHHHH
Confidence 6899999899999999999999998877533
|
|
| >PRK05965 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.1e-10 Score=127.41 Aligned_cols=370 Identities=13% Similarity=0.045 Sum_probs=199.3
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++......... .+ ...+...++.+.|.+.+..+
T Consensus 35 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~----~~-~~~~~~~~lae~L~~~~p~~ 106 (459)
T PRK05965 35 AKGATLTDASGH---QLLDAFAGLWCVNVGYGQESIVEAAAEQMRELPYATGY----FH-FGSEPAIRLAAKLAERAPGS 106 (459)
T ss_pred eeEeEEEECCCC---EEEECcccHHhccCCCCCHHHHHHHHHHHHhcCCcccc----cc-cCCHHHHHHHHHHHhhCCCC
Confidence 445666666664 49998765 556789999999988653111110 00 11234456777777776533
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHc---------C---ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQS---------L---AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~---------G---~~ 204 (609)
.+ .+.|+.+||++ +...+++.- ... ...=+++ |..|+.-...||... .+.... + ..
T Consensus 107 ~~-~v~f~~sGSEA-ve~AlKlAr-~~~-------~~~g~~~-r~kii~~~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~ 175 (459)
T PRK05965 107 LN-HVYFTLGGSDA-VDSAVRFIR-HYW-------NATGRPS-KKQFISLERGYHGSSSVGAGLTALPAFHRGFDLPLPW 175 (459)
T ss_pred cC-EEEEeCChhHH-HHHHHHHHH-HHH-------HhcCCCC-ccEEEEecCCcCcccHHHHHhcCCchhhcccCCCCCC
Confidence 33 89999888886 333333210 000 0000122 335665555555543 221111 1 11
Q ss_pred EEEEecCC--C--CCCC--------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 205 VVEIGLDD--D--GLLD--------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 205 vv~v~~~~--~--g~ld--------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
+..++... . ..-| ++++++.+.+. ..+++..+++..++...|.+.| +++|.++|++||+++|+
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~iAAvIvEPiqg~gG~~~p~~~yl~~lr~lc~~~gillI~ 254 (459)
T PRK05965 176 QHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAEL-GADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVA 254 (459)
T ss_pred CEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhc-CCCceEEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 23333211 0 0012 35677777531 1135678888888888888866 67899999999999999
Q ss_pred eccccCC-ccc--ccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 269 DFAASGP-YVE--IDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 269 D~A~~~~-~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
|+++.+. -.. .-....+ -..|+++++ |.++|.. .+|.+++++++. +.+.+.....+.+.
T Consensus 255 DEV~tGfGRtG~~~a~~~~g-v~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~--~~~~~~~~~~~~~~------------ 317 (459)
T PRK05965 255 DEVITGFGRTGPLFACEAEG-VVPDLMTVA--KGLTSGYVPMGAVLMSDHVY--QGIADGAGAAAPVG------------ 317 (459)
T ss_pred echhccCccCchhhhHhhcC-CCCCeEEec--hhhccCCcceeEEEEcHHHH--HHHhcccccccccc------------
Confidence 9997642 221 1111111 145999886 9998763 689999999983 22211100000000
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCC
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~ 424 (609)
...-..|.|--.+...+.++.+ + .+.+.++.+++.+++.+.|+++....+++.. ..+..++.+.+.. +.
T Consensus 318 ----h~~T~~gnpl~~Aaa~a~L~~l--~---~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v-rG~Gl~~gie~~~-~~ 386 (459)
T PRK05965 318 ----HGYTYSAHPVSAAVGLEVLRLY--H---EGGLLANGQKAGPRFAAGLDALRAHPLVGDV-RGRGLLGALELVA-DK 386 (459)
T ss_pred ----ccCCCCCCHHHHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHhhccCCCEEEE-eecceEEEEEEec-cc
Confidence 0000123343333334444443 2 2345566677777777777654211111111 0122233333322 10
Q ss_pred CCcCCCCCCCCCCCCC-----ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 425 NSSLGENTKTETDKPL-----HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 425 ~~~~~~~~~~~~~~~l-----~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
. ...+. ....+...+.+ .||.+++. ....+|
T Consensus 387 ~----------~~~~~~~~~~~~~~i~~~~~~-~Gll~~~~---------------------------------g~~~i~ 422 (459)
T PRK05965 387 A----------TKTPFDAALDPADRIFDRAYA-NGLVFRAF---------------------------------GDGVLG 422 (459)
T ss_pred c----------ccCCCCchhHHHHHHHHHHHh-CCeEEEec---------------------------------CCcEEE
Confidence 0 00000 13456666655 59988621 136799
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+.+++-+|++|++++++++.+++...
T Consensus 423 ~~PpL~it~~ei~~~~~~l~~~l~~~ 448 (459)
T PRK05965 423 FAPALCCTEGEFDLIFERTRKTLDDV 448 (459)
T ss_pred EECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999998764
|
|
| >PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-10 Score=125.17 Aligned_cols=352 Identities=13% Similarity=0.059 Sum_probs=193.8
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..++ |-..+.|.+++.+++.... ..... ..+.....++.+.+.+.++..
T Consensus 29 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~-~~~~~-----~~~~~~~~~lae~L~~~~p~~ 99 (422)
T PRK05630 29 TDGVFLTLEDGS---TVIDAMSSWWSAAHGHGHPRLKAAAHKQIDTMS-HVMFG-----GLTHEPAIKLTRKLLNLTDNG 99 (422)
T ss_pred ceeeEEEECCCC---EEEEcchhHHHhcCCCCCHHHHHHHHHHHHhCC-CcccC-----CcCCHHHHHHHHHHHhhCCCC
Confidence 555666666664 49997654 6677899999999887531 11110 011234566777777776533
Q ss_pred CCCcEEEeCChHHHHHHHHHHH-hcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC-------------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEV-MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------- 202 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------- 202 (609)
- +.+.|+.|||++ +...+++ .... . ..-.++ |..|+.-...||... .++...+
T Consensus 100 ~-~~v~f~~SGseA-~e~AlklAr~~~--~-------~~g~~~-r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~ 167 (422)
T PRK05630 100 L-DHVFYSDSGSVS-VEVAIKMALQYS--K-------GQGHPE-RTRLLTWRSGYHGDTFAAMSVCDPEGGMHSLWKGTL 167 (422)
T ss_pred c-CEEEEeCCcHHH-HHHHHHHHHHHH--H-------hcCCCC-CcEEEEECCCcCCccHHHhccCCCcccccccccccC
Confidence 3 389999899886 2222221 1100 0 000122 335666666666532 2222111
Q ss_pred ceEEEEecCCCCCCC-------HHHHHHHHhhhccCCCceEEEEecc-cCccccccC----HHHHHHHHHHhCCeEEEec
Q 038499 203 AEVVEIGLDDDGLLD-------IEALRSKLELYKDAKRPILGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 203 ~~vv~v~~~~~g~ld-------~e~L~~al~~~~~~~~~~lv~~s~~-sn~TG~~~d----l~~I~~la~~~g~~vivD~ 270 (609)
..+..+|.......+ .+++++.+. +++..+++... ....|.+.| +++|.++|++||+++|+|+
T Consensus 168 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-----~~iAAvi~EPi~qg~gG~~~~~~~~l~~lr~lc~~~g~llI~DE 242 (422)
T PRK05630 168 PEQIFAPAPPVRGSSPQEISEYLRSLELLID-----ETVAAIIIEPIVQGAGGMRFHDVALIEGVRTLCDKHDILLIADE 242 (422)
T ss_pred CCCeEcCCCcccCCChHHHHHHHHHHHHHHh-----hceEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEec
Confidence 122334332111112 234444444 46778888874 777788754 6789999999999999999
Q ss_pred cccCCcccccCCC--CCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 271 AASGPYVEIDVRS--GQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 271 A~~~~~~~id~~~--~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
++.+-...-.+-. ...-..|++++ .|.++|. ..+|++++++++. +.+.... +.+...
T Consensus 243 v~tG~GrtG~~~a~~~~gv~PDi~t~--gK~l~gG~~p~~av~~~~~i~--~~~~~~~-~~~~~~--------------- 302 (422)
T PRK05630 243 IATGFGRTGELFATLAAGVTPDIMCV--GKALTGGFMSFAATLCTDKVA--QLISTPN-GGGALM--------------- 302 (422)
T ss_pred ceeCCCcCchhhHHHhcCCCCCeeee--echhhcCccccceeeccHHHH--HHHhccC-CCCccc---------------
Confidence 9753211111100 00013588865 5999653 2368888888873 2221100 000000
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC---CCceE-EeCCCCCCCcceEEEEeccCC
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP---NQNIK-ILGNTSTKRQAILSFNIHSST 423 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~---~p~i~-v~~~~~~~r~~~~~f~~~~~~ 423 (609)
...-..|.|...+...++++... . +...++.+++.+++.+.|+. .|.+. +- .+..++.+.+.. +
T Consensus 303 -h~~T~~g~Pla~aaa~aaL~~l~--~---~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vR-----g~Gl~~~ie~~~-~ 370 (422)
T PRK05630 303 -HGPTFMANPLACAVAHASLEIIE--T---GMWRKQVKRIEAELIAGLSPLAHLPGVADVR-----VLGAIGVVEMEQ-P 370 (422)
T ss_pred -cCCCCcCCHHHHHHHHHHHHHHH--h---CcHHHHHHHHHHHHHHHHHHhhcCCCeeeee-----ccccEEEEEECC-c
Confidence 00011244545555555565542 2 13344666666666665543 33221 11 133455555543 1
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP 503 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~ 503 (609)
.....+.+.+.+ .|+.+++. ...+|+.++
T Consensus 371 ----------------~~~~~~~~~~~~-~Gl~~~~~----------------------------------g~~l~~~Pp 399 (422)
T PRK05630 371 ----------------VDMEEATQAAVD-HGVWLRPF----------------------------------GRLVYVMPP 399 (422)
T ss_pred ----------------ccHHHHHHHHHH-CCeEEEec----------------------------------CCEEEEECC
Confidence 124567777766 59988621 157899999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 038499 504 YYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 504 ~~~t~eeid~ll~al~~v~~~ 524 (609)
+-.|++|+++++++|++++..
T Consensus 400 L~it~~~i~~~~~~l~~al~~ 420 (422)
T PRK05630 400 YITTSEQIAQICAALAAAVKA 420 (422)
T ss_pred ccCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999998764
|
|
| >PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-10 Score=124.63 Aligned_cols=352 Identities=13% Similarity=0.070 Sum_probs=195.8
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++......... ....+...++.+.+++.++.+
T Consensus 32 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~~~~~~------~~~~~~~~~la~~L~~~~p~~ 102 (428)
T PRK07986 32 AEGCELILADGR---RLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFG------GITHPPAIELCRKLVAMTPQP 102 (428)
T ss_pred eeeeEEEeCCCC---EEEEcchhHHhhcCCCCCHHHHHHHHHHHhhcCCcccc------ccCCHHHHHHHHHHHhhCCCC
Confidence 445566666664 49997654 567789999999888754211110 012234566777777777543
Q ss_pred CCCcEEEeCChHHHHHHHHHHH-hcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC-------------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEV-MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------- 202 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------- 202 (609)
- +.+.|+.||+++ +...+++ .... .....+ +..|+.-...||+.. .+....+
T Consensus 103 ~-~~v~f~~SGsEA-ve~AlklAr~~~----------~~~g~~-r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~ 169 (428)
T PRK07986 103 L-ECVFLADSGSVA-VEVAMKMALQYW----------QAKGEP-RQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYL 169 (428)
T ss_pred c-CEEEEeCCcHHH-HHHHHHHHHHHH----------HhcCCC-CcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCC
Confidence 3 389999888886 3322222 1100 000122 335666565566532 2221111
Q ss_pred ceEEEEecCCC------CCCCHHHHHHHHhhhccCCCceEEEEecc-cCccccccC----HHHHHHHHHHhCCeEEEecc
Q 038499 203 AEVVEIGLDDD------GLLDIEALRSKLELYKDAKRPILGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 203 ~~vv~v~~~~~------g~ld~e~L~~al~~~~~~~~~~lv~~s~~-sn~TG~~~d----l~~I~~la~~~g~~vivD~A 271 (609)
..++.++.... ..-|++++++.+... .+++.+|++... +...|.+.+ +++|.++|++||+++|+|++
T Consensus 170 ~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~--~~~iaavi~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv 247 (428)
T PRK07986 170 PENLFAPAPQSRFDGEWDERDIAPFARLMAAH--RHEIAAVILEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEI 247 (428)
T ss_pred CCCEEECCCCcccchhhHHHHHHHHHHHHHhC--CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecc
Confidence 11223332110 012567888888632 235667777764 666676533 78999999999999999999
Q ss_pred ccCCcccccC---CCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 272 ASGPYVEIDV---RSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 272 ~~~~~~~id~---~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
+.+-...-.+ .... -..|++++ .|.++|. ..+|.+++++++ .+.+.+... +. +.
T Consensus 248 ~tG~GrtG~~fa~~~~g-v~PDi~t~--gK~l~gG~~p~~av~~~~~i--~~~~~~~~~--~~--~~------------- 305 (428)
T PRK07986 248 ATGFGRTGKLFACEHAG-IAPDILCL--GKALTGGTMTLSATLTTREV--AETISNGEA--GC--FM------------- 305 (428)
T ss_pred ccCCccCCCeeeecccC-CCCCEEEe--chhhhCCcccCcchhchHHH--HHHhhcCCC--Cc--cc-------------
Confidence 7532111111 1110 13588864 6999765 357888888887 333321100 00 00
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC---CceE-EeCCCCCCCcceEEEEeccCC
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN---QNIK-ILGNTSTKRQAILSFNIHSST 423 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~---p~i~-v~~~~~~~r~~~~~f~~~~~~ 423 (609)
...-..|.|...+...+.++.... +.+.++.+++.+++.+.|.++ +.+. +-+ +..++.+.+.. +
T Consensus 306 -~~~T~~g~p~~~aaa~a~L~~i~~-----~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg-----~Gl~~~ve~~~-~ 373 (428)
T PRK07986 306 -HGPTFMGNPLACAVANASLSLLES-----GDWQQQVAAIEAQLREELAPLRDAPMVADVRV-----LGAIGVVETTR-P 373 (428)
T ss_pred -cCCCCCcCHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHHHhcCCCEEeEec-----cceEEEEEeCC-c
Confidence 000012444444444555555421 134556666666666666543 3321 111 22344444433 1
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP 503 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~ 503 (609)
.....+.+.|.+ .||.+++. ...+|+..+
T Consensus 374 ----------------~~~~~~~~~l~~-~Gl~~~~~----------------------------------g~~i~~~Pp 402 (428)
T PRK07986 374 ----------------VNMAALQRFFVE-QGVWIRPF----------------------------------GKLIYLMPP 402 (428)
T ss_pred ----------------ccHHHHHHHHHH-CCcEEEec----------------------------------CCEEEEeCC
Confidence 134567777765 59988621 157999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHh
Q 038499 504 YYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 504 ~~~t~eeid~ll~al~~v~~~ 524 (609)
+..|++|+++++++|.++++.
T Consensus 403 l~it~~ei~~~~~~l~~~l~~ 423 (428)
T PRK07986 403 YIILPEQLQRLTAAVNRAVQD 423 (428)
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999998754
|
|
| >PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.1e-13 Score=137.02 Aligned_cols=174 Identities=24% Similarity=0.251 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH---
Q 038499 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL--- 195 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--- 195 (609)
......++++.+++++|.+ ..+|+.+||.++.-.+ +++ .+|++ .|++....|....
T Consensus 27 ~D~~~~~l~~~i~~l~g~e---~a~f~~sGT~An~~al-~~~---------------~~~~~--~vi~~~~aHi~~~E~g 85 (290)
T PF01212_consen 27 EDPTTARLEERIAELFGKE---AALFVPSGTMANQLAL-RAH---------------LRPGE--SVICADTAHIHFDETG 85 (290)
T ss_dssp SSHHHHHHHHHHHHHHTSS---EEEEESSHHHHHHHHH-HHH---------------HHTTE--EEEEETTEHHHHSSTT
T ss_pred CChhHHHHHHHHHHHcCCC---EEEEeCCCChHHHHHH-HHH---------------HhcCC--ceeccccceeeeeccc
Confidence 3566788999999999996 4468878888755444 333 25676 6888887776433
Q ss_pred HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhc-cCCCceEEEEecccCcc-ccccC---HHHHHHHHHHhCCeEEEec
Q 038499 196 LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYK-DAKRPILGSFSACSNVT-GIYSD---TRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 196 ~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~-~~~~~~lv~~s~~sn~T-G~~~d---l~~I~~la~~~g~~vivD~ 270 (609)
......|++++.++.+++|.+|+++|++++.... +..++++|++++++|.. |.+.+ +++|.++||+||+.++.|+
T Consensus 86 a~~~~~G~~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 86 AIEELSGAKLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp HHHHHTTCEEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHHHHHHHHT-EEEEEE
T ss_pred hhhHhcCcEEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHHHHHHhCceEEEEeh
Confidence 2234589999999977779999999999998632 23468899999998874 77776 5678899999999999999
Q ss_pred cc---cCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 271 AA---SGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 271 A~---~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
|- +..+....++++. .++|++.+|++|.+|.|.| ++|+.+++.
T Consensus 166 ARl~~a~~~~~~~~~e~~-~~~D~v~~~~tK~~g~~~G-avl~~~~~~ 211 (290)
T PF01212_consen 166 ARLANAAAALGVSLAEIA-AGADSVSFGGTKNGGAPGG-AVLAGNKEF 211 (290)
T ss_dssp TTHHHHHCHHHHHHHHHH-TTSSEEEEETTSTT-SSSE-EEEEESHHH
T ss_pred hhHHHhhhcccccHHHHh-hhCCEEEEEEEcccccccc-eEEEechHH
Confidence 82 2222222222221 3789999999999998886 999999986
|
It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B .... |
| >PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.4e-10 Score=123.99 Aligned_cols=201 Identities=19% Similarity=0.154 Sum_probs=123.3
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
.|+|..++ |-..+.|.+++.+++... ++.. ..++...++.+.+.+.+.. . +.+.|+.+|+.+
T Consensus 54 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~---~~~~------~~~~~~~~la~~l~~~~p~-~-~~v~f~~sGseA- 121 (428)
T PRK12389 54 KYIDYLAAYGPIITGHAHPHITKAITEAAENG---VLYG------TPTELEIEFAKMLKEAIPS-L-EKVRFVNSGTEA- 121 (428)
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhC---CccC------CCCHHHHHHHHHHHHhCCC-C-cEEEEeCCHHHH-
Confidence 48887543 456788999998888642 1111 0123345667777777652 2 489999888886
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcCc-------------------eEEEEecCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSLA-------------------EVVEIGLDD 212 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G~-------------------~vv~v~~~~ 212 (609)
+...+++-- .. .|.+ .|+.-...||+.. ..+...+. .+..++.
T Consensus 122 ~e~AlklAr-------------~~-tgr~-~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 184 (428)
T PRK12389 122 VMTTIRVAR-------------AY-TGRT-KIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPF-- 184 (428)
T ss_pred HHHHHHHHH-------------Hh-hCCC-EEEEECCCcCCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCC--
Confidence 333333210 01 2322 4555555555533 33322221 1112221
Q ss_pred CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccccC-CCCCCC
Q 038499 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDV-RSGQTD 287 (609)
Q Consensus 213 ~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~-~~~~~~ 287 (609)
-|++++++.+.++. +++..+++....+..|.+.| +++|.++|++||+++|+|+++.+.-..... .....-
T Consensus 185 ---~d~~~l~~~l~~~~--~~vaavi~EPv~g~~G~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~Rt~~~~a~~~~gv 259 (428)
T PRK12389 185 ---NDIEALKEALDKWG--DEVAAVLVEPIVGNFGIVEPKPGFLEAVNELAHEAGALVIYDEVITAFRFMYGGAQDLLGV 259 (428)
T ss_pred ---CCHHHHHHHHHhcC--CcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccccccccCcchhhHHhCC
Confidence 27899999886431 45778889989999999988 899999999999999999998754111000 000001
Q ss_pred CccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 288 GYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 288 ~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
..|++++ .|.+||...+|.+++++++
T Consensus 260 ~PDivt~--gK~lggG~Pi~av~~~~~i 285 (428)
T PRK12389 260 EPDLTAL--GKIIGGGLPIGAYGGRKDI 285 (428)
T ss_pred CCCeeee--chhhcCCCceeEEeEHHHH
Confidence 4587665 5999875557888999888
|
|
| >PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-10 Score=127.16 Aligned_cols=367 Identities=14% Similarity=0.107 Sum_probs=196.1
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..++ |-..+.|.+++.+++..... .+. .+ ..++...++.+.|++++...
T Consensus 45 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~~-~~~----~~-~~~~~~~~lae~L~~~~p~~ 115 (460)
T PRK06916 45 GEGRKLYDVNGN---EYYDGVSSIWLNVHGHQVPELDEAIREQLNKIAH-STL----LG-LANVPSILLAEKLIEVVPEG 115 (460)
T ss_pred ccccEEEeCCCC---EEEEcchhHHHhhcCCCCHHHHHHHHHHHHhCCC-ccc----cc-cCCHHHHHHHHHHHHhCCCC
Confidence 445556665664 49997643 67788999999998875321 111 01 11234566777788877543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcC------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSL------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G------------~~ 204 (609)
.+ .+.|+.||+++ +...+++--. .. .. . =.++.+ .|+.-...||+... ++...| ..
T Consensus 116 ~~-~v~f~~SGseA-ve~AlklAr~-~~---~~---~-g~tgr~-~ii~~~~~YHG~t~~als~s~~~~~~~~~~~~~~~ 184 (460)
T PRK06916 116 LK-KVFYSDSGATA-VEIAIKMAFQ-YW---QN---K-GKPKKQ-RFVTLKNAYHGDTIGAVSVGAIDLFHQVYSSLLFE 184 (460)
T ss_pred CC-EEEEeCCcHHH-HHHHHHHHHH-HH---Hh---c-CCCCCc-EEEEECCcCCcccHHhHhccCCcccccccCCCCCC
Confidence 33 89999888886 3322222100 00 00 0 023333 56655555555432 222211 12
Q ss_pred EEEEecCC------CC------CCCHHHHHHHHhhhccCCCceEEEEec-ccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 205 VVEIGLDD------DG------LLDIEALRSKLELYKDAKRPILGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 205 vv~v~~~~------~g------~ld~e~L~~al~~~~~~~~~~lv~~s~-~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
+..+|... .+ .-+++++++.++.. .+++..+++.. +....|.+.+ +++|.++|++||+++|
T Consensus 185 ~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~--~~~iAAvi~EP~iqg~gG~~~~~~~fl~~lr~lc~~~g~llI 262 (460)
T PRK06916 185 AIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEK--HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFI 262 (460)
T ss_pred CEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhC--CCcEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 33343221 00 11356677777532 24567878877 5777788765 6789999999999999
Q ss_pred EeccccC-Ccccc--cCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 268 FDFAASG-PYVEI--DVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 268 vD~A~~~-~~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+|+++.+ |-... -....+ -..|+++++ |.++|.. .+|.+++++++. +.+.+.....+...
T Consensus 263 ~DEV~TG~GRtG~~~a~~~~g-v~PDiv~~g--K~l~gG~~Pi~av~~~~ei~--~~~~~~~~~~~~~~----------- 326 (460)
T PRK06916 263 TDEVATGFGRTGKMFACEHEN-VTPDIMTAG--KGLTGGYLPIAITVTTDEIY--NAFYGDYEEQKTFF----------- 326 (460)
T ss_pred eechhhCCCcCchhhHHHhcC-CCCCeeeee--hhhhcCccccceeeecHHHH--HHhhccccccCccc-----------
Confidence 9999753 21110 000010 145888764 9887663 589999999883 22211100000000
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCC
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSST 423 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~ 423 (609)
...-..|.|-......+.++.+ + .+.+.++.+++.+++.+.|+++....+++.. ..+..++.+.+.. +
T Consensus 327 -----~~~T~~gnpl~~aaa~a~l~~l--~---~~~l~~~~~~~g~~l~~~l~~l~~~~~v~~v-rG~Glm~giel~~-~ 394 (460)
T PRK06916 327 -----HGHSYTGNPLGCAVALANLELY--E---KTNLIEQVARKTEYVATQLEDLFALKHVGDI-RQLGLMVGIELVK-N 394 (460)
T ss_pred -----cCCCCCCCHHHHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHHhhcCCCeEEe-ecCCceeeEEeec-c
Confidence 0000123333333334444443 2 2335566667777777776554221111111 0122333333322 1
Q ss_pred CCCcCCCCCCCCCCCC---CC-hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 424 INSSLGENTKTETDKP---LH-GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~---l~-~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
.. .+..+ .. ...+...+.+ .||.+.+. ...+|
T Consensus 395 ~~---------~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~----------------------------------g~~l~ 430 (460)
T PRK06916 395 KE---------TKEPFEWTERVGVQVCKRSRE-LGMLTRPL----------------------------------GNTIV 430 (460)
T ss_pred cc---------cccCCCchhhHHHHHHHHHHH-CCeEEEec----------------------------------CCEEE
Confidence 00 00000 01 2456666655 59887621 25789
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+.+++.+|++|+++++++++++++.
T Consensus 431 ~~Ppl~it~~~id~~~~~l~~~l~~ 455 (460)
T PRK06916 431 FMPPLASTIDELDEMLRILYKAISD 455 (460)
T ss_pred EeCCcccCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998865
|
|
| >PRK05639 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.6e-10 Score=122.39 Aligned_cols=359 Identities=15% Similarity=0.062 Sum_probs=196.5
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+++.++.+..|+ -|+|..++ |-..+.|.+++.+++.... ..+.. ........++.+.+.+.++..
T Consensus 42 ~~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~Ai~~ql~~~~-~~~~~-----~~~~~~~~~lae~L~~~~p~~ 112 (457)
T PRK05639 42 GFGALIEDVDGN---VFIDFLAGAAAASTGYSHPKLVKAVQEQVALIQ-HSMIG-----YTHSERAIRVAEKLAEISPIE 112 (457)
T ss_pred eecCEEEeCCCC---EEEECCcCHHhhccCCCCHHHHHHHHHHHHhcc-ccccC-----ccCCHHHHHHHHHHHhhCCCC
Confidence 344455555554 48998643 5567899999998886531 11111 111234456777787877643
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC-------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL-------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G-------------~ 203 (609)
.+ .|.|+.|||.+ +...+++-- .-.|. +.|+.-...||+.. .+....+ .
T Consensus 113 ~~-~v~f~~SGsEA-~e~AlklAr--------------~~tgr-~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~ 175 (457)
T PRK05639 113 NP-KVLFGLSGSDA-VDMAIKVSK--------------FSTRR-PWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMP 175 (457)
T ss_pred cC-EEEEeCchHHH-HHHHHHHHH--------------HhcCC-CeEEEECCCcCCccHHHHHHcCCCcccccCCCCCCC
Confidence 33 89999888886 333333210 01222 25666555555533 2222111 1
Q ss_pred eEEEEecCCCCC--------CCHH--------HHHHHHhhh-ccCCCceEEEEecccCccccccC----HHHHHHHHHHh
Q 038499 204 EVVEIGLDDDGL--------LDIE--------ALRSKLELY-KDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQY 262 (609)
Q Consensus 204 ~vv~v~~~~~g~--------ld~e--------~L~~al~~~-~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~ 262 (609)
.++.+|...... -+.+ .|++.+... ...+++..+++.......|.+.| +++|.++|++|
T Consensus 176 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~l~~lc~~~ 255 (457)
T PRK05639 176 NVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFKELKKLLDEH 255 (457)
T ss_pred CceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCccCCCCCcCCCHHHHHHHHHHHHHc
Confidence 244555432110 1222 344444211 11256778899988888898766 67899999999
Q ss_pred CCeEEEeccccCCcccccC---CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccc
Q 038499 263 GGFACFDFAASGPYVEIDV---RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNE 339 (609)
Q Consensus 263 g~~vivD~A~~~~~~~id~---~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~ 339 (609)
|+++|+|+++.+....-.+ ...+ -.+|++++ .|.+||..++|++++++++ .+.. . + ..
T Consensus 256 g~llI~DEv~tG~GrtG~~~a~~~~g-v~PDiv~~--gK~l~gG~pi~av~~~~~i--~~~~-~---~-~~--------- 316 (457)
T PRK05639 256 GILLVMDEVQTGIGRTGKWFASEWFE-VKPDLIIF--GKGVASGMGLSGVIGRKEL--MDLT-S---G-SA--------- 316 (457)
T ss_pred CCEEEEechhhccCcCchHHHHHhcC-CCCCEEEe--chhhcCCCcceeEEehHHH--Hhhc-C---C-Cc---------
Confidence 9999999997632111111 1111 14688885 5999876667999999998 3311 1 0 00
Q ss_pred ccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CceEEeCCCCCCCcceEEEE
Q 038499 340 KDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN-QNIKILGNTSTKRQAILSFN 418 (609)
Q Consensus 340 ~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~-p~i~v~~~~~~~r~~~~~f~ 418 (609)
.....|.|-..+...+.++.+. .+.+.++.+++.+++++.|+++ .+..+++.. ..+..++.+.
T Consensus 317 ----------~~T~~g~p~~~aaa~a~l~~l~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~V-rG~Gl~~gve 380 (457)
T PRK05639 317 ----------LLTPAANPVISAAAEATLEIIE-----EENLLKNALKVGEFIKKRLLEMKESFEVIGDV-RGKGLMIGVE 380 (457)
T ss_pred ----------ccCCCcCHHHHHHHHHHHHHHH-----HccHHHHHHHHHHHHHHHHHHHHHhCCCEEee-ccceeEEEEE
Confidence 0001244444444445555442 2234455555666666666542 111122211 0122233333
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEE
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWT 498 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~i 498 (609)
+.. +.. .........+.+.+.+ .|+.+.+. +. .+..+
T Consensus 381 ~~~-~~~----------~~~~~~~~~~~~~~~~-~Gv~~~~~----g~---------------------------~~~~l 417 (457)
T PRK05639 381 IVK-ENG----------KPDPELTGKICWRAFE-LGLILPSY----GM---------------------------FGNVI 417 (457)
T ss_pred Eec-CCC----------CCCHHHHHHHHHHHHh-CCeEEeec----CC---------------------------CCCEE
Confidence 322 110 0000113456666766 59988631 00 13689
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 499 RISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 499 Rls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
|+.+++..|++|++.+++++++++....
T Consensus 418 r~~Ppl~it~~~id~~~~~l~~~l~~~~ 445 (457)
T PRK05639 418 RITPPLVITKEIAEKGLEIMERAIKDAL 445 (457)
T ss_pred EEeCCCccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999987754
|
|
| >TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.9e-10 Score=122.15 Aligned_cols=355 Identities=14% Similarity=0.083 Sum_probs=191.8
Q ss_pred CccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 038499 66 NAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE 139 (609)
Q Consensus 66 ~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~ 139 (609)
+.++.+..|++ |+|..++ |-..+.|.+++.+++... ...... +. ......++.+.+.+.++..-
T Consensus 36 G~~l~d~dG~~---ylD~~~g~~~~~lGh~~p~v~~ai~~~~~~~-~~~~~~-~~----~~~~~~~la~~l~~~~~~~~- 105 (427)
T TIGR00508 36 GVELTLDDGRR---LIDGMSSWWAAIHGYNHPRLNAAAQKQIDKM-SHVMFG-GF----THKPAIELCQKLVKMTPNAL- 105 (427)
T ss_pred eeEEEeCCCCE---EEEccchHHHhcCCCCCHHHHHHHHHHHHhc-CCcccc-cc----CCHHHHHHHHHHHhhCCCCC-
Confidence 34455555643 8887643 566788999998887643 111110 01 11234556677777775433
Q ss_pred CcEEEeCChHHHHHHHHHHH-hcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcCc-------------e
Q 038499 140 DAMIFCGSGTTAAIKRLQEV-MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSLA-------------E 204 (609)
Q Consensus 140 ~~vift~sGttaal~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G~-------------~ 204 (609)
+.+.|+.+|+++ +...+++ +.... ..=.++. ..|+.-...||+.. ..+...+- .
T Consensus 106 ~~v~f~~sGseA-~e~AlklAr~~~~---------~~~~~~r-~~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~ 174 (427)
T TIGR00508 106 DCVFLADSGSVA-VEVALKMALQYWQ---------AKGEKNR-QKFLTIRSGYHGDTFGAMSVCDPENSMHSLYKGYLPE 174 (427)
T ss_pred CEEEEeCCcHHH-HHHHHHHHHHHHH---------hhCCCCc-cEEEEEcCCcCCccHhhhcccCCcccccccccccCCC
Confidence 389999888886 3322222 11000 0001222 24666555566543 22222121 1
Q ss_pred EEEEecCCC------CCCCHHHHHHHHhhhccCCCceEEEEecc-cCcccccc----CHHHHHHHHHHhCCeEEEecccc
Q 038499 205 VVEIGLDDD------GLLDIEALRSKLELYKDAKRPILGSFSAC-SNVTGIYS----DTRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 205 vv~v~~~~~------g~ld~e~L~~al~~~~~~~~~~lv~~s~~-sn~TG~~~----dl~~I~~la~~~g~~vivD~A~~ 273 (609)
+..++.... ..-|++++++.+.+. .+++.+|++... +...|.+. .+++|.++|++||+++|+|+++.
T Consensus 175 ~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~--~~~vaavivEPv~~g~gG~~~~~~~~l~~l~~lc~~~~~llI~DEv~t 252 (427)
T TIGR00508 175 QIFAPAPQNRFDEEWNEEAITPLAKLMELH--SDEIAAVILEPIVQGAGGMRFYHPTYLKRVQALCKQYDILLIADEIAT 252 (427)
T ss_pred CeEcCCCCccccchhHHHHHHHHHHHHHhc--CCcEEEEEEechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEecccc
Confidence 112221110 011567777787632 135667788775 66666643 37889999999999999999974
Q ss_pred C-Ccccc--cCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccc
Q 038499 274 G-PYVEI--DVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 274 ~-~~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (609)
+ |...- -..... -..|++++ .|.++|.. .++.++.++++. +.+.....+. + . .
T Consensus 253 G~Gr~G~~~~~~~~~-v~pDi~~~--gK~l~gG~~p~~a~~~~~~~~--~~~~~~~~~~----~-----------~---~ 309 (427)
T TIGR00508 253 GFGRTGKLFACEHAG-VVPDILCV--GKALTGGYMTLSATVTTDKVA--QTISSGEAGC----F-----------M---H 309 (427)
T ss_pred CCCcCCccchhhhcC-CCCCEEEe--chhhhcCcccceEEEEcHHHH--HHHhcCCCCc----c-----------c---c
Confidence 3 22111 010111 14587775 69987653 467888887772 2222110000 0 0 0
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 350 ERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 350 ~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
..-..|.|...+.+.+++..+. . +.+.++.+++.+++.+.|+++.....++.. .....++.+.+.. +
T Consensus 310 ~~T~~g~p~~~aaa~a~l~~l~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~i~~v-rg~G~~~~i~~~~-~------ 376 (427)
T TIGR00508 310 GPTFMGNPLACAVAEASLAILL--E---GEWQKQVSAIENQLKRELSPLRKNPVVKDV-RVLGAIGVVEMYK-P------ 376 (427)
T ss_pred CCCCCcCHHHHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHhhcCCCEEeE-eccccEEEEEECC-c------
Confidence 0001234444444555555442 1 123466666777777776554211111110 1134555555543 2
Q ss_pred CCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHH
Q 038499 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNE 509 (609)
Q Consensus 430 ~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~e 509 (609)
.....+.+.|.+ .||.+.+. ...+|++++..+|++
T Consensus 377 ----------~~~~~~~~~l~~-~Gv~~~~~----------------------------------~~~l~~~ppl~~t~~ 411 (427)
T TIGR00508 377 ----------VNVEELQKKFVE-QGVWIRPF----------------------------------GKLIYVMPPYIITTE 411 (427)
T ss_pred ----------cCHHHHHHHHHH-CCeEEEec----------------------------------CCEEEEECCCCCCHH
Confidence 235678888866 59987621 146899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 038499 510 EFEFTLEALEFIAIY 524 (609)
Q Consensus 510 eid~ll~al~~v~~~ 524 (609)
|++++++++++++++
T Consensus 412 ~id~~~~~l~~~l~~ 426 (427)
T TIGR00508 412 QLQKLTAALIEALHE 426 (427)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999998753
|
All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae. |
| >PRK06149 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-10 Score=131.90 Aligned_cols=346 Identities=14% Similarity=0.113 Sum_probs=192.1
Q ss_pred EEecCCCC----CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 79 TYADHTAS----GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 79 vyld~~a~----g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
-|+|..++ |-..+.|.+++.+++.... ..+. . ......++.+++++++...-+ .+.|+.||+.+.-.
T Consensus 586 ~ylD~~~~~~~lGh~hp~v~~Ai~~q~~~l~--~~~~---~---~~~~~~elae~L~~~~p~~~~-~v~f~~SGsEA~e~ 656 (972)
T PRK06149 586 SYLDMVNNVTVLGHGHPRLAAAAARQWSLLN--TNSR---F---HYAAVAEFSERLAALAPDGLD-TVFLVNSGSEANDL 656 (972)
T ss_pred EEEECCCCccccCCCCHHHHHHHHHHHHhcc--cccc---c---cCHHHHHHHHHHHHhCCCCcC-EEEEeCCchHHHHH
Confidence 47877643 4467889999988876432 1111 1 124556778888888843333 78999899886333
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC------------c-eEEEEecCC--CC---C
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------A-EVVEIGLDD--DG---L 215 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------~-~vv~v~~~~--~g---~ 215 (609)
++-.+.. . .|.+ .|++-...||+.. .+....+ . .+..++... .+ .
T Consensus 657 AlklAr~--------------~-tgr~-~ii~~~~~yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~ 720 (972)
T PRK06149 657 AIRLAWA--------------A-SGRR-DVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRG 720 (972)
T ss_pred HHHHHHH--------------h-cCCC-eEEEEeCCCCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCC
Confidence 3322211 1 2322 3555554555432 2111100 0 122332221 11 1
Q ss_pred CC-----HHHHHHHHhhhc-cCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc-CCcccc---cC
Q 038499 216 LD-----IEALRSKLELYK-DAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVEI---DV 281 (609)
Q Consensus 216 ld-----~e~L~~al~~~~-~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~-~~~~~i---d~ 281 (609)
.+ .+++++.++... ..+++..+++..+....|.+.+ +++|.++|++||+++|+|+++. +|-..- ..
T Consensus 721 ~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~ 800 (972)
T PRK06149 721 ADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGF 800 (972)
T ss_pred cccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccCCCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhh
Confidence 12 345555553211 1245678888888888899988 8999999999999999999984 433221 11
Q ss_pred CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHH
Q 038499 282 RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ 361 (609)
Q Consensus 282 ~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~ 361 (609)
...+ -.+|++++ .|.+||...+|++++++++ .+.+.+. + . + -. ...|.|-..+
T Consensus 801 e~~g-v~PDivt~--gK~lg~G~Pl~av~~~~~i--~~~~~~~---~-~-------------~----~s-T~~gnP~~~a 853 (972)
T PRK06149 801 EQQG-VVPDIITM--AKGMGNGHPLGAVITRREI--AEALEAE---G-Y-------------F----FS-STGGSPVSCR 853 (972)
T ss_pred hhcC-CCCCEEEe--cccccCCeeeEEEEEcHHH--HhhhccC---C-c-------------c----cC-CCCCCHHHHH
Confidence 1111 14688866 5999876668999999988 3333210 0 0 0 00 0134554444
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCC
Q 038499 362 MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETD 437 (609)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~ 437 (609)
...+.++... .+.+.++.+++.+++++.|++ .|-+..+. .+..++.+.+.. +... ...
T Consensus 854 aala~L~~i~-----~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vr----G~Gl~~gvel~~-~~~~--------~~~ 915 (972)
T PRK06149 854 IGMAVLDVLR-----EEKLQENARRVGDHLKARLEALADRHPLIGAVH----GMGLYLGVELVR-DRQT--------LEP 915 (972)
T ss_pred HHHHHHHHHH-----hcCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEe----ecceEEEEEEec-Cccc--------CCC
Confidence 4455555442 234555666666666666654 33221111 122233333322 1000 000
Q ss_pred CCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 038499 438 KPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEA 517 (609)
Q Consensus 438 ~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~a 517 (609)
.......+++.|.+ .||.+.+. +. .++.+||..++.+|++|+++++++
T Consensus 916 ~~~~~~~i~~~l~~-~Gvl~~~~-------g~------------------------~~~vl~~~Ppl~it~~~id~~~~~ 963 (972)
T PRK06149 916 ATEETAAICDRLLE-LGVIMQPT-------GD------------------------HLNILKIKPPLCLDRESADFFVDM 963 (972)
T ss_pred ChHHHHHHHHHHHh-CCeEEeec-------CC------------------------CCCEEEEECCCcCCHHHHHHHHHH
Confidence 00113467777766 59988731 11 136899999999999999999999
Q ss_pred HHHHHHhcc
Q 038499 518 LEFIAIYGQ 526 (609)
Q Consensus 518 l~~v~~~~~ 526 (609)
|++++..++
T Consensus 964 l~~~l~~~~ 972 (972)
T PRK06149 964 LDRVLTEGW 972 (972)
T ss_pred HHHHHHhhC
Confidence 999987653
|
|
| >TIGR00709 dat 2,4-diaminobutyrate 4-transaminases | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.8e-10 Score=122.10 Aligned_cols=363 Identities=15% Similarity=0.117 Sum_probs=191.1
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|++ |+|..++ |-..+.|.+++.+++.... ..+. ....++...++.+.|.+++...
T Consensus 28 ~~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~-~~~~-----~~~~~~~~~~lae~L~~~~p~~ 98 (442)
T TIGR00709 28 AQGCWVTDVEGKE---YLDFLAGAGTLALGHNHPNMKQKILDYLQSGL-PLHT-----LDLTTPLKDAFIEALLNIIPKR 98 (442)
T ss_pred ccccEEEeCCCCE---EEEccccHhhhcCCCCCHHHHHHHHHHHHhcc-Cccc-----cccCcHHHHHHHHHHHHhCCCc
Confidence 5566777777753 8997644 6678899999998886421 1111 1112345566777888877532
Q ss_pred -CCCcE-EEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC------------
Q 038499 138 -QEDAM-IFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------ 202 (609)
Q Consensus 138 -~~~~v-ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------ 202 (609)
....+ +++.||+.+ +...+++-- .. .| |+.|+.-...||+.. ..+...+
T Consensus 99 ~~~~~~~f~~~sGsEA-~e~AlklAr-------------~~-tg-r~~Ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~ 162 (442)
T TIGR00709 99 KMDYKLQFPGPSGADA-VEAAIKLAK-------------TY-TG-RTNVISFSGGFHGMTIGALAVTGNLFAKNAVGMLM 162 (442)
T ss_pred CCCccEEEeCCCHHHH-HHHHHHHHH-------------Hh-cC-CCeEEEEcCCcCCchHHHHhhcCChhhhccCCCCC
Confidence 11244 444578775 333333210 01 23 235666555555543 2332222
Q ss_pred ceEEEEecCCCCCC--------CHHH----HHHHHhhh-ccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCe
Q 038499 203 AEVVEIGLDDDGLL--------DIEA----LRSKLELY-KDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGF 265 (609)
Q Consensus 203 ~~vv~v~~~~~g~l--------d~e~----L~~al~~~-~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~ 265 (609)
..+..++....... +.+. +++.+... ...+++..+++..+.+..|.+.+ +++|.++|++||++
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~Epi~g~~G~~~~~~~yl~~lr~lc~~~g~l 242 (442)
T TIGR00709 163 PGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIK 242 (442)
T ss_pred CCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCE
Confidence 12333433221111 1222 33333210 01135677788888888887754 67899999999999
Q ss_pred EEEeccccC-Cccc--ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccc
Q 038499 266 ACFDFAASG-PYVE--IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342 (609)
Q Consensus 266 vivD~A~~~-~~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (609)
+|+|+++.+ +... ....... -..|++++ .|.+++...+|+++++++. +.+.+...+ ++
T Consensus 243 lI~DEV~tGfGRtG~~~a~~~~g-v~PDiv~~--gK~l~~G~Pigav~~~~~~---~~~~~~~~~-~T------------ 303 (442)
T TIGR00709 243 LILDEVQAGFGRSGTMFAFEHAG-IEPDFVVM--SKAVGGGLPLAVLLIAPEF---DAWQPAGHT-GT------------ 303 (442)
T ss_pred EEEeccccCCCCCCchhHHHHcC-CCCcEEEE--cccccCCcccEEEEEchHH---hccCCCcCC-CC------------
Confidence 999999764 3221 1111111 14588885 5999875568999998774 122111110 00
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcceEEEEecc
Q 038499 343 LYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAILSFNIHS 421 (609)
Q Consensus 343 ~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~~~f~~~~ 421 (609)
..|.|-......+++..+ + .+.+.++.+++.+++.+.|+++. ...+++.. ......+.+.+..
T Consensus 304 ----------~~gnpla~aaa~a~L~~i--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~v~~v-rG~Gl~~~ie~~~ 367 (442)
T TIGR00709 304 ----------FRGNQLAMVTGTEALNYW--K---DDNLAQNAQERGERITSFLDDMIKEHPCIGNV-RGRGLMQGIMIVD 367 (442)
T ss_pred ----------CCcCHHHHHHHHHHHHHH--H---hcCHHHHHHHHHHHHHHHHHHHHHhCCCeeee-eccceEEEEEEcc
Confidence 123333333333444333 2 22345566666666666665421 11111111 0122333443332
Q ss_pred CCCCCcCCCCCCCCCCCC----CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 422 STINSSLGENTKTETDKP----LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~----l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
+.. +.+..... -....+...+.+ .||.+.+... ..+.
T Consensus 368 -~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~-------------------------------~~~~ 408 (442)
T TIGR00709 368 -ERQ------SKDATGAYPRDCELAAAIQGACFE-NGLLLETGGR-------------------------------EGEV 408 (442)
T ss_pred -Ccc------cccccccCCcchHHHHHHHHHHHH-CCeEEeecCC-------------------------------CCCE
Confidence 100 00000000 013456666655 5998763110 1368
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 498 TRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+|+.++..+|++|++++++++++++...
T Consensus 409 l~~~Ppl~it~~ei~~~~~~l~~~l~~~ 436 (442)
T TIGR00709 409 FRLLCPITIDQEECEEGISRFKQAVEEA 436 (442)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988764
|
This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase. |
| >PRK06082 4-aminobutyrate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.2e-10 Score=122.85 Aligned_cols=352 Identities=14% Similarity=0.058 Sum_probs=191.5
Q ss_pred CccccCCCCCCceEEecCCCC-----CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC
Q 038499 66 NAEFDSPFGKRRLTYADHTAS-----GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQED 140 (609)
Q Consensus 66 ~~~~~~p~g~~~~vyld~~a~-----g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~ 140 (609)
+.++.+..|+ -|+|..+. |-..+.|.+++.+++.... +... ...++...++.+.++++++...+
T Consensus 63 G~~l~D~dG~---~ylD~~g~~~~~lGh~~p~v~~Ai~~ql~~~~---~~~~----~~~~~~~~~lae~L~~~~p~~~~- 131 (459)
T PRK06082 63 GIYIEDVDGK---KYMDFHGNNVHQLGYGHPHVIEKVKEQMAKLP---FSPR----RFTNETAIECAEKLTEIAGGELN- 131 (459)
T ss_pred eeEEEECCCC---EEEEcccHhhcccCCCCHHHHHHHHHHHHhCC---CccC----ccCCHHHHHHHHHHHHhCCCCCC-
Confidence 3344444443 48887632 4567889999998886531 1110 11235567788888888864333
Q ss_pred cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc------------eEEEE
Q 038499 141 AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA------------EVVEI 208 (609)
Q Consensus 141 ~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v 208 (609)
.+.|+.+|+.+ +..++++.. .. .|...+|......|......+...|. .+..+
T Consensus 132 ~v~f~~sGseA-ve~AlklAr-------------~~-tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~ 196 (459)
T PRK06082 132 RVLFAPGGTSA-IGMALKLAR-------------HI-TGNFKVVSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERI 196 (459)
T ss_pred EEEECCCcHHH-HHHHHHHHH-------------Hh-cCCCEEEEEeCCCcCccHHHHhhcCCcccccCCCCCCCCCEEe
Confidence 89999888775 443333221 01 22222444455555554444433221 12333
Q ss_pred ecCCC-----CCC------CHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccC
Q 038499 209 GLDDD-----GLL------DIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 209 ~~~~~-----g~l------d~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~ 274 (609)
+.... ... ++++|++.+.+. +++.+|++..+.+..+.+.| +++|.++|++||+++|+|+++++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~---~~vAavIvEPv~g~g~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG 273 (459)
T PRK06082 197 PPAVSYRGAFPDADGSDVHYADYLEYVIEKE---GGIGAFIAEAVRNTDVQVPSKAYWKRVREICDKHNVLLIIDEIPNG 273 (459)
T ss_pred CCCcccccccCChhHHHHHHHHHHHHHHhcC---CCEEEEEECCccCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence 32110 011 135577777532 35678888888776443455 78999999999999999999764
Q ss_pred CcccccC---CCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccc
Q 038499 275 PYVEIDV---RSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE 350 (609)
Q Consensus 275 ~~~~id~---~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (609)
....-.+ ...+ -..|++++ .|.+||.. .+|.+++++++. ...... . ..
T Consensus 274 ~GRtG~~fa~e~~g-v~PDiv~~--gKgl~gG~~P~~av~~~~~i~--~~~~~~-~----------------------~~ 325 (459)
T PRK06082 274 MGRTGEWFTHQAYG-IEPDILCI--GKGLGGGLVPIAAMITKDKYN--TAAQIS-L----------------------GH 325 (459)
T ss_pred CCccchhhHhHhhC-CCCCEEEe--cccccCCCCcceEEEEcHHHH--hhccCC-C----------------------CC
Confidence 2111111 1111 14688875 59998753 478888888872 111100 0 00
Q ss_pred cccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 351 RESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 351 r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
....|.|-..+...+.++.+ +. +.+.++.+++.+++.+.|+++. ...+++.. ..+..++.+.+.. +..
T Consensus 326 ~T~~gnpl~~aaa~a~L~~l--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~v-rG~Gl~~~ve~~~-~~~---- 394 (459)
T PRK06082 326 YTHEKSPLGCAAALATIEVI--EQ---EGLLEKVKADSQFMRERLLEMKAKYPLIGDV-RGIGLLWGVELVT-DRH---- 394 (459)
T ss_pred CCCCcCHHHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHHhhCCCeeee-eeccceeEEEEcc-Ccc----
Confidence 01123343334444555544 21 2355566666666666665431 11111111 0122334444432 100
Q ss_pred CCCCCCCCCC--CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC
Q 038499 430 ENTKTETDKP--LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS 507 (609)
Q Consensus 430 ~~~~~~~~~~--l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t 507 (609)
.... .....+...+.+ .|+.+.+. ..+.+|++.++.+|
T Consensus 395 ------~~~~~~~~~~~~~~~~~~-~Gvl~~~~---------------------------------~~~~i~~~Ppl~it 434 (459)
T PRK06082 395 ------TKERAYDEAEAVLYRCLN-NGLSFKVS---------------------------------QGNVIQLSPPLIIT 434 (459)
T ss_pred ------ccCccHHHHHHHHHHHHh-CCCEEEec---------------------------------CCCEEEEeCCCccC
Confidence 0000 012345555655 58887621 03689999999999
Q ss_pred HHHHHHHHHHHHHHHHhc
Q 038499 508 NEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 508 ~eeid~ll~al~~v~~~~ 525 (609)
++|++++++++++++...
T Consensus 435 ~~eid~~~~~l~~~l~~~ 452 (459)
T PRK06082 435 REELTQALAILEEAIAKI 452 (459)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999988764
|
|
| >PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.3e-10 Score=127.09 Aligned_cols=364 Identities=16% Similarity=0.134 Sum_probs=197.3
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++.... +.. ..+ ..++...++.+.+.+.+...
T Consensus 36 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~l~---~~~--~~~-~~~~~~~~lae~L~~~~p~~ 106 (466)
T PRK07030 36 GEGVWLEDFEGK---RYLDAVSSWWVNVFGHANPRINQRIKDQVDQLE---HVI--LAG-FSHEPVIELSERLVKITPPG 106 (466)
T ss_pred eeccEEEECCCC---EEEEcchhHHhhcCCCCCHHHHHHHHHHHHhcC---Ccc--ccc-cCCHHHHHHHHHHHHhCCCC
Confidence 556667666664 49997644 5667899999998886531 110 001 12344566777788877533
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcCc------------e
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSLA------------E 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G~------------~ 204 (609)
.+ .|.|+.||+.+ +...+++--. . ...+ -.++. ..|+.-...||... .++...+- .
T Consensus 107 ~~-~v~f~~sGsEA-ve~AlKlAr~-~---~~~~----g~t~r-~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~p~~~~ 175 (466)
T PRK07030 107 LS-RCFYADNGSSA-IEVALKMSFH-Y---WRNR----GKPRK-KRFVTLTNSYHGETLAAMSVGDVALFTETYKPLLLD 175 (466)
T ss_pred cC-EEEEeCCcHHH-HHHHHHHHHH-H---HHHh----CCCCC-cEEEEECCCcCcccHHHHhccCCccccccCCccCCC
Confidence 33 89999888886 2222222100 0 0000 01232 24555555555543 33322111 1
Q ss_pred EEEEecCCC-----C-------CCCHHHHHHHHhhhccCCCceEEEEec-ccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 205 VVEIGLDDD-----G-------LLDIEALRSKLELYKDAKRPILGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 205 vv~v~~~~~-----g-------~ld~e~L~~al~~~~~~~~~~lv~~s~-~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
+..+|.... + .-+++++++.+.+. .+++..+++.. ++...|.+.+ +++|.++|++||+++|
T Consensus 176 ~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~--~~~iAAvi~EP~iqg~gG~~~~~~~yl~~lr~lc~~~g~llI 253 (466)
T PRK07030 176 TIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEH--HDEIAAVIVEPLIQGAGGMRMYHPVYLKLLREACDRYGVHLI 253 (466)
T ss_pred CEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhC--CCceEEEEEecccccCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 233332211 1 01356677777632 24667878887 5777788765 6789999999999999
Q ss_pred EeccccC-Ccccc--cCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 268 FDFAASG-PYVEI--DVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 268 vD~A~~~-~~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+|+++.+ |-..- -..... -..|+++++ |.++|.. .+|.+++++++. +.+.......+.
T Consensus 254 ~DEV~TGfGRtG~~~a~~~~g-v~PDiv~~g--Kgl~gG~~Pi~av~~~~ei~--~~~~~~~~~~~~------------- 315 (466)
T PRK07030 254 HDEIAVGFGRTGTMFACEQAG-IRPDFLCLS--KALTGGYLPLAAVLTTDTVY--QAFYDDYPTLRA------------- 315 (466)
T ss_pred EeehhhCcCccccchHHHhcC-CCCCEEeee--hhccCCcccceEEEecHHHH--HHHhcccccccc-------------
Confidence 9999653 22111 001110 145999885 9998763 589999999883 222110000000
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC---CceE-EeCCCCCCCcceEEEEe
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN---QNIK-ILGNTSTKRQAILSFNI 419 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~---p~i~-v~~~~~~~r~~~~~f~~ 419 (609)
+. ...-..|.|--..+..+.++.+ + .+.+.++.+++.+++.+.|+++ |.+. +.+ +...+.+.+
T Consensus 316 ~~---h~~T~~gnpla~aaa~a~L~~i--~---~~~l~~~~~~~G~~l~~~L~~l~~~~~v~~vrG-----~Gl~~gie~ 382 (466)
T PRK07030 316 FL---HSHSYTGNPLACAAALATLDIF--E---QDNVIENNRALARRMAEATAHLADHPHVAEVRQ-----TGMILAIEM 382 (466)
T ss_pred cc---cCCCCCCCHHHHHHHHHHHHHH--H---hcCHHHHHHHHHHHHHHHHHHHhcCCCEEEeEe-----ceeEEEEEe
Confidence 00 0000123333333334444443 2 2345566677777777766543 3221 221 223333333
Q ss_pred ccCCCCCcCCCCCCCCCCCC-C---ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCC
Q 038499 420 HSSTINSSLGENTKTETDKP-L---HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKP 495 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~-l---~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~ 495 (609)
.. +.. .+..+ . ....+.+.+.+ .|+.+++. .
T Consensus 383 ~~-~~~---------~~~~~~~~~~~~~~i~~~~~~-~Gvl~~~~----------------------------------g 417 (466)
T PRK07030 383 VQ-DKA---------SKTPYPWQERRGLKVYQHALE-RGALLRPL----------------------------------G 417 (466)
T ss_pred cc-Ccc---------ccccCcchhHHHHHHHHHHHH-CCeEEEec----------------------------------C
Confidence 22 100 00000 0 12356666655 58887621 2
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 496 GWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 496 g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
..+|+.+++.+|++|++.++++++++++..
T Consensus 418 ~~i~~~Ppl~it~~eid~~~~~l~~al~~~ 447 (466)
T PRK07030 418 SVVYFLPPYVITPEQIDFLAEVASEGIDIA 447 (466)
T ss_pred CEEEEECCccCCHHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999875
|
|
| >KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.8e-11 Score=118.37 Aligned_cols=353 Identities=19% Similarity=0.227 Sum_probs=210.2
Q ss_pred CChHHHHHHHHHhhcCCccC--CCCCCchhhHHHHHH-HHHHHHHHHHHhCCCCCC---cEEEeCChHHHHHHHHHHHhc
Q 038499 88 RSLRYIENYIINNVLPFYGN--THTCDSYVGQHTTNM-VHEASNYIKKCLGGGQED---AMIFCGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n--~~~~~~~~~~~~~~~-~~e~r~~ia~~~g~~~~~---~vift~sGttaal~~l~~~l~ 161 (609)
.....|+|++-..+...|.. |+.. |+.|...-+. ..-++++..+.+|.+++. +|-- =||+.+++.....+
T Consensus 51 Fts~aVmeAlGS~ltNKYSEGyPG~R-YYGGne~ID~iE~LCq~RALeaF~ldp~kWGVNVQp-~SGSPANfavYtal-- 126 (477)
T KOG2467|consen 51 FTSRAVMEALGSCLTNKYSEGYPGAR-YYGGNEYIDQIELLCQKRALEAFGLDPEKWGVNVQP-YSGSPANFAVYTAL-- 126 (477)
T ss_pred chHHHHHHHHhHHhhcccccCCCccc-ccCcchHHHHHHHHHHHHHHHHhCCCHHHCceeecc-CCCCchhhHHHhhh--
Confidence 45678999998888877744 4432 4455544433 334566677889998773 2222 27888877665544
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HH----HHcCceEE-----EEecCC-CCCCCHHHHHHHHhhhcc
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SW----RQSLAEVV-----EIGLDD-DGLLDIEALRSKLELYKD 230 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~----~~~G~~vv-----~v~~~~-~g~ld~e~L~~al~~~~~ 230 (609)
++|++| |+--+..+...+. .+ +..-+.-+ ...+|+ +|.||.|.|++....
T Consensus 127 --------------l~Ph~R--iMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~IDYD~Le~~A~~--- 187 (477)
T KOG2467|consen 127 --------------LKPHER--IMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYIDYDKLEKTATL--- 187 (477)
T ss_pred --------------cCCCCe--eeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCceehHHHHHHHHh---
Confidence 478885 6654444333221 11 21112111 223564 789999999988775
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~ 310 (609)
-||++++.- .+-.-...|..++-++|.+.|++++.|-||-.|.+.-.+-+...+.+|+|+++.||.+-||.| |+++
T Consensus 188 -frPk~iiaG--~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRGPRg-~mIF 263 (477)
T KOG2467|consen 188 -FRPKLIIAG--TSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRGPRG-AMIF 263 (477)
T ss_pred -cCCcEEEec--cccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccCCcc-eeEE
Confidence 478875542 234457789999999999999999999998766555444444446889999999999999996 8888
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh-HHHHHHHHHHHHHHHh--cCHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ-VIQMIRAALAFWVKEY--IGHEVIKKQEETY 387 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~-i~~~~~aal~~~~~~~--~g~~~i~~~~~~l 387 (609)
.++.. +...|-. |-. +-|. .++..-..-. -....|..| .++. ++..+++. -.+....++..++
T Consensus 264 yRkGv---k~~~~k~-g~~-i~yd----lE~kINfaVF-P~lQGGPHNhtIaa----lAvALkQa~tpefk~Yq~qV~~N 329 (477)
T KOG2467|consen 264 YRKGV---KSIKPKQ-GKE-ILYD----LEDKINFAVF-PGLQGGPHNHTIAA----LAVALKQAMTPEFKEYQKQVLKN 329 (477)
T ss_pred EeccC---CcCCCCC-CCc-ceec----hhhhhhhhcc-ccccCCCCcchHHH----HHHHHHhhCCHHHHHHHHHHHHH
Confidence 88876 1222111 111 1110 0000000000 011223222 2222 22223333 2455677788888
Q ss_pred HHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh
Q 038499 388 IERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY 467 (609)
Q Consensus 388 ~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~ 467 (609)
++.+.++|.+. |++++.....++ .+.+.+.+ .++++..+-+.| +.-+|.+.-...+. .
T Consensus 330 akala~~l~~~-Gy~lvtgGTDnH--lvLvDLr~----------------~G~dGarvE~vl-e~~~I~~NKNtvpG-D- 387 (477)
T KOG2467|consen 330 AKALASALISR-GYKLVTGGTDNH--LVLVDLRP----------------KGVDGARVEKVL-ELCHIALNKNTVPG-D- 387 (477)
T ss_pred HHHHHHHHHHc-CceEecCCccce--EEEEeccc----------------cCCchHHHHHHH-HHhhhhhcCCcCCC-C-
Confidence 88888888876 888886532222 23333333 236776666666 66677655321111 0
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC----HHHHHHHHHHHHHHHHhc
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS----NEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t----~eeid~ll~al~~v~~~~ 525 (609)
...+.|+.|||.-+..+| ++|++++.+-|...++-.
T Consensus 388 ----------------------~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~fi~~av~i~ 427 (477)
T KOG2467|consen 388 ----------------------KSALSPGGIRIGTPAMTSRGFGEEDFEKVADFIDRAVKIA 427 (477)
T ss_pred ----------------------ccccCCCceeccchhhcccCccHHHHHHHHHHHHHHHHHH
Confidence 112358999998765443 788888888887766543
|
|
| >PLN02482 glutamate-1-semialdehyde 2,1-aminomutase | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.4e-10 Score=122.00 Aligned_cols=229 Identities=13% Similarity=0.085 Sum_probs=136.0
Q ss_pred HHHHHHHHHhhccCCC-ccc--cCCC-----------CC-----CceEEecCCCC------CCChHHHHHHHHHhhcCCc
Q 038499 51 SEKKLTWLQSQIIGKN-AEF--DSPF-----------GK-----RRLTYADHTAS------GRSLRYIENYIINNVLPFY 105 (609)
Q Consensus 51 ~~~~~~~~r~~~~g~~-~~~--~~p~-----------g~-----~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~ 105 (609)
..+.+++.++.+||-- ..+ ..|. |. ...-|+|+.++ |-.++.|.+++.+++....
T Consensus 53 S~~l~~ra~~~~pgGv~~~~r~~~~~~~~p~~~~~a~G~~l~D~dG~~yiD~~~g~g~~~lGh~~p~v~~av~~ql~~~~ 132 (474)
T PLN02482 53 SEEIFKAAKELMPGGVNSPVRAFKSVGGQPIVFDRVKGSYAWDVDGNEYIDYVGSWGPAIIGHADDEVLAALAETMKKGT 132 (474)
T ss_pred HHHHHHHHHhhCCCCCCCcchhhcccCCCCeeEEEeeeCEEEECCCCEEEEecccccccccCCCCHHHHHHHHHHHhhCC
Confidence 5677888888888632 111 1111 11 13458887543 4456899999999886532
Q ss_pred cCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEE
Q 038499 106 GNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVF 185 (609)
Q Consensus 106 ~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vl 185 (609)
+.. . ......++.+.|.+.+.. . +.+.|+.|||.+.... +++-. .. .|.+ .|+
T Consensus 133 ---~~~-----~-~~~~~~~lAe~l~~~~p~-~-~~v~f~~SGsEA~e~A-lklAR-------------~~-tgr~-~Ii 185 (474)
T PLN02482 133 ---SFG-----A-PCLLENVLAEMVIDAVPS-V-EMVRFVNSGTEACMGV-LRLAR-------------AY-TGRE-KII 185 (474)
T ss_pred ---CCC-----C-CCHHHHHHHHHHHHhCCC-C-CEEEEeCChHHHHHHH-HHHHH-------------Hh-cCCC-EEE
Confidence 111 0 123455667777777753 2 4899998888863333 22210 01 2322 465
Q ss_pred ECCCCccchHHH-HHHc--C-----------c------eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCc
Q 038499 186 VGPHEHHSNLLS-WRQS--L-----------A------EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245 (609)
Q Consensus 186 v~~~~h~s~~~~-~~~~--G-----------~------~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~ 245 (609)
.-...||..... +... + . .+..++.+ |+++|++.+.++ .+++.+|++..+...
T Consensus 186 ~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~~--~~~iAavI~Epv~g~ 258 (474)
T PLN02482 186 KFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYN-----DLEAVKKLFEAN--KGEIAAVILEPVVGN 258 (474)
T ss_pred EECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCC-----ChHHHHHHHHhC--CCceEEEEECCCCCC
Confidence 555555553211 1110 0 0 11222222 789999988742 245778899999888
Q ss_pred cccccC----HHHHHHHHHHhCCeEEEeccccCCcccccC-CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 246 TGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDV-RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 246 TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~-~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
.|.+.| +++|.++|++||+++|+|+++.+.-...-. .....-..|++++ .|.+||...+|.++.++++
T Consensus 259 ~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~tGfR~g~~ga~~~~gv~PDi~t~--gK~lggG~Pigav~g~~ei 331 (474)
T PLN02482 259 SGFIVPKKEFLEGLREITKENGALLVFDEVMTGFRIAYGGAQEYFGITPDLTTL--GKVIGGGLPVGAYGGRREI 331 (474)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCeecCcchHhHHhCCCCCEEEe--cchhhCCCceEEEEEcHHH
Confidence 999877 457999999999999999998532111000 0000013587665 5999875557888999888
|
|
| >PRK07481 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.3e-10 Score=120.79 Aligned_cols=365 Identities=15% Similarity=0.106 Sum_probs=192.4
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++......... .+ ..+....++.++|.+.++..
T Consensus 31 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~~~~----~~-~~~~~~~~lae~L~~~~~~~ 102 (449)
T PRK07481 31 GDGVYVYDIDGK---KLLDGVGGLWNVNVGHNREEVKEAIVRQLDELEYYSTF----DG-TTHPRAIELSYELIDMFAPE 102 (449)
T ss_pred ccccEEEeCCCC---EEEECchhHHhhcCCCCCHHHHHHHHHHHHhccceecc----cc-cCCHHHHHHHHHHHHhcCCC
Confidence 556667776675 39998653 556788999999888653111000 01 12344566777788887422
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcC------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSL------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G------------~~ 204 (609)
.-+.+.|+.||+++ +...+++-- ... + ..-+++ |..|+.-...||+... +....+ ..
T Consensus 103 ~~~~v~f~~sGsEA-ve~AlklAr-~~~---~----~~g~~~-r~~ii~~~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g 172 (449)
T PRK07481 103 GMRRVFFSSGGSDS-VETALKLAR-QYW---K----VRGQPE-RTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPG 172 (449)
T ss_pred CCCEEEEcCchHHH-HHHHHHHHH-HHH---H----hcCCCC-CcEEEEECCCcCCcchhhhccCCCcccccccCCCCCC
Confidence 22389999888885 333322210 000 0 000123 3356655555555332 221111 12
Q ss_pred EEEEecCCC-----CCCCHHHH--------HHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 205 VVEIGLDDD-----GLLDIEAL--------RSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 205 vv~v~~~~~-----g~ld~e~L--------~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
+..++.... +..|++++ ++.|.. ...+++..|++..++...|.+.+ +++|.++|++||+++|
T Consensus 173 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~-~~~~~iAAviiEPvqg~gG~~~~~~~fl~~lr~lc~~~g~llI 251 (449)
T PRK07481 173 CFHVETPWLYRNPFTEQDPEELARICARLLEREIAF-QGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREVCDRHGILLI 251 (449)
T ss_pred CEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHh-cCCCcEEEEEEecccCCcCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 333332210 00134443 343431 11246778899988888898876 7889999999999999
Q ss_pred EeccccC-Cccc--ccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 268 FDFAASG-PYVE--IDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 268 vD~A~~~-~~~~--id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+|+++.+ +-.. .-..... -.+|+++++ |.++|.. .+|.+++++++. +.+.+.....+...
T Consensus 252 ~DEV~tGfGRtG~~~a~~~~g-v~PDiv~~g--Kgl~gG~~Pi~av~~~~~i~--~~~~~~~~~~~~~~----------- 315 (449)
T PRK07481 252 ADEVVTGFGRTGSWFGSRGWG-VKPDIMCLA--KGITSGYVPLGATMVNARIA--DAFEANADFGGAIM----------- 315 (449)
T ss_pred EeehhhCcCcCchhhHhhhcC-CCCCEEEEe--ecccCCCcCceEEEEcHHHH--HHHhccCccccccc-----------
Confidence 9999663 2211 0011110 145888885 9998652 479999998873 23221100000000
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCce-EEeCCCCCCCcceEEEE
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNI-KILGNTSTKRQAILSFN 418 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i-~v~~~~~~~r~~~~~f~ 418 (609)
...-..|.|-..+...+.++.+. .+.+.++.+++.+++.+.|++ .|-+ ++.+ +...+.+.
T Consensus 316 -----h~~T~~gnpl~~aaa~a~L~~l~-----~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG-----~Glm~gi~ 380 (449)
T PRK07481 316 -----HGYTYSGHPVACAAALATLDIVV-----REDLPANAAKRGAYLLEGLQPLKERFELVGDVRG-----KGLMLALD 380 (449)
T ss_pred -----cCCCCCCCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHhhcCCCeEEEee-----cceEEEEE
Confidence 00001233333333344444331 234455555666666655544 3322 1222 22233333
Q ss_pred eccCCCCCcCCCCCCCCCCCCC-----ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 419 IHSSTINSSLGENTKTETDKPL-----HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l-----~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
+.. +.. ...+. ....+...+.+ .||.+++.
T Consensus 381 l~~-~~~----------~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~--------------------------------- 415 (449)
T PRK07481 381 LVA-DKA----------TREPIDPSKGYANAVADVARE-NGVLVRPS--------------------------------- 415 (449)
T ss_pred ecc-ccc----------ccCCCCchhHHHHHHHHHHHh-CCeEEEec---------------------------------
Confidence 322 100 00011 12456666655 58887621
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 494 KPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 494 ~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
...+||+.++.+|++|+|++++++++++..
T Consensus 416 -g~~i~l~Ppl~it~~eid~~~~~l~~~l~~ 445 (449)
T PRK07481 416 -GTKIILSPPLVIQREDVDRIVDALDAGLSA 445 (449)
T ss_pred -CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 135899999889999999999999999865
|
|
| >PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.7e-10 Score=123.24 Aligned_cols=206 Identities=16% Similarity=0.095 Sum_probs=121.3
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
-|+|..++ |-..+.|.+++.+++.... +.. ..+....++.+.+.+.++...+ .|.|+.||+.+.
T Consensus 54 ~yiD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~---~~~------~~~~~~~~la~~L~~~~~~~~~-~v~f~~SGsEA~ 123 (433)
T PRK00615 54 TFIDFCGSWGSLIHGHSHPKICDAIQQGAERGT---SYG------LTSEQEILFAEELFSYLGLEDH-KIRFVSSGTEAT 123 (433)
T ss_pred EEEEcccchhccccCCCCHHHHHHHHHHHHhCC---CCC------CCCHHHHHHHHHHHHhCCCCcC-EEEEeCchHHHH
Confidence 48887644 5567899999998886431 110 1123455677777777764333 899998888863
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH----HHHHHcCce---EEEE---e-cCCC----CCCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL----LSWRQSLAE---VVEI---G-LDDD----GLLD 217 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~----~~~~~~G~~---vv~v---~-~~~~----g~ld 217 (609)
...+++-- .. .|.. .|+.-...||+.. ......+-. .... + .... ..-|
T Consensus 124 -e~AiklAr-------------~~-tgr~-~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 187 (433)
T PRK00615 124 -MTAVRLAR-------------GI-TGRS-IIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYND 187 (433)
T ss_pred -HHHHHHHH-------------Hh-hCCC-EEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCC
Confidence 33332210 01 2322 4555454455432 111111100 0000 0 0000 0127
Q ss_pred HHHHHHHHhhhccCCCceEEEEecccCccccccCH----HHHHHHHHHhCCeEEEeccccCCcccc-c-CCCCCCCCccE
Q 038499 218 IEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT----RSIARLLHQYGGFACFDFAASGPYVEI-D-VRSGQTDGYDA 291 (609)
Q Consensus 218 ~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl----~~I~~la~~~g~~vivD~A~~~~~~~i-d-~~~~~~~~~D~ 291 (609)
+++|++.+.+.. +++.+|++..+....|.+.|. ++|.++|++||+++|+|+++.+--... - ..... -..|+
T Consensus 188 ~~~l~~~l~~~~--~~~aavI~Epv~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~R~G~~ga~~~~g-v~PDi 264 (433)
T PRK00615 188 FQIFQTVMNSLG--HRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVTGFRVAQGGAAAIYH-VKPDI 264 (433)
T ss_pred HHHHHHHHHhcC--CceEEEEECCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccccccccHhHHHHhcC-CCCCe
Confidence 899999886421 467788999998888998884 599999999999999999985321110 0 00010 14588
Q ss_pred EEEcCCCCCCCCCCcEEEEEechh
Q 038499 292 IFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 292 v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
+++ .|.+||...+|++++++++
T Consensus 265 ~~~--gK~lggG~p~~av~~~~~i 286 (433)
T PRK00615 265 TVY--GKILGGGLPAAAVVAHKSI 286 (433)
T ss_pred EEE--cccccCCcceeeeeecHHH
Confidence 765 6999864447888999888
|
|
| >COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.6e-11 Score=129.36 Aligned_cols=237 Identities=17% Similarity=0.204 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
....++.+..|+.+|++.. .|.-|||+.++..++.++ +++|| .|+++...|-|+...+..
T Consensus 70 G~i~eAqe~aA~~fgAd~t---yFvvNGTS~ank~vi~a~---------------~~~GD--~VLvdRN~HKSi~~glil 129 (557)
T COG1982 70 GPIKEAQELAARVFGADHT---YFVVNGTSTANKAVINAV---------------LTPGD--KVLVDRNCHKSIHHGLIL 129 (557)
T ss_pred ccHHHHHHHHHHHhCCCce---EEEECCccHHHHHHHHhh---------------cCCCC--EEEecCCccHHHHHHHHH
Confidence 3578999999999999754 444489999888888776 48999 799999999999999999
Q ss_pred cCceEEEEecCCC------CCCCHHHHHHHHhhhccCCCc-eEEEEecccCccccccCHHHHHHHHHHhCCeEEEecccc
Q 038499 201 SLAEVVEIGLDDD------GLLDIEALRSKLELYKDAKRP-ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 201 ~G~~vv~v~~~~~------g~ld~e~L~~al~~~~~~~~~-~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~ 273 (609)
.|+..+++....+ |.++.+.+.+++.++ +.. |+++++++ +-.|+..++++|.+.+|++++|+.+|+++.
T Consensus 130 aGa~Pvyl~p~~np~~gi~ggI~~~~~~~~l~~~---~~~~k~~vitnp-TYdGv~~n~~~i~~~~~~~~a~v~~deah~ 205 (557)
T COG1982 130 AGATPVYLEPSRNPLYGIIGGIPLETFKEALLAH---PDAEKLAVITNP-TYDGVCYNLRKIVELLHHYGAWVLYDEAHP 205 (557)
T ss_pred cCCceEEecCCCCccccccCCCCHHHHHHHHHhC---hhhheeEEEecC-ccceEeecHHHHHHHHhhcCceEEhhhcCc
Confidence 9999999865432 579999999988764 333 77777765 467999999999999999999999999987
Q ss_pred CCcccccCCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEech-hhccCCCCCCccCCCceEeecccccccccccccccc
Q 038499 274 GPYVEIDVRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKA-LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE 350 (609)
Q Consensus 274 ~~~~~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~-~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (609)
+....-++.+. ...+.|+++-|.||.+++..-..+|.+++. . ++. ......-.
T Consensus 206 ~~~~~~~~l~~~~~~~~~~~~tqS~HK~l~alSQaS~iHv~~~~~--~~~----------------------~r~nea~~ 261 (557)
T COG1982 206 AHFDFSPMLPESALNGGADFVTQSTHKLLAALSQASMIHVKDGRA--VNH----------------------ERFNEALM 261 (557)
T ss_pred ccccccccCcchhhhcCceEEEechhhhhhhhhhhHHHhhCCCcc--CCH----------------------HHHHHHHH
Confidence 64333333221 124789999999999997766778887763 2 110 00000011
Q ss_pred cccCCChhHH--HHHHHHHHHHHHHhcCHHHH---HHHHHHHHHHHHHHhCCCCceEEeCCC
Q 038499 351 RESGGTPQVI--QMIRAALAFWVKEYIGHEVI---KKQEETYIERALERLLPNQNIKILGNT 407 (609)
Q Consensus 351 r~~~gtp~i~--~~~~aal~~~~~~~~g~~~i---~~~~~~l~~~~~~~L~~~p~i~v~~~~ 407 (609)
....++|+.. +.+-+|-.+ ....|.... .....+.++.+++....++++.++.+.
T Consensus 262 ~h~STSPsY~l~ASlD~Ar~~--~~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~ 321 (557)
T COG1982 262 MHQSTSPSYPLMASLDVARMQ--EGNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPE 321 (557)
T ss_pred HHccCCchHHHHHHHHHHHHh--hhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccc
Confidence 2223445433 222222111 123343332 455666788888888888889888875
|
|
| >PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8.6e-10 Score=120.56 Aligned_cols=361 Identities=15% Similarity=0.116 Sum_probs=190.9
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..++ |-..+.|.+++.+++......... .. ......++.+.+.+.+...
T Consensus 53 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~l~~~~~~--~~----~~~~~~~lae~L~~~~p~~ 123 (472)
T PRK08742 53 GEGAWLVGHDGR---RYLDAVSSWWTNLFGHAEPRIGAAIAAQAGELEQVMLA--GF----THEPAVQLAEQLLAIAPRQ 123 (472)
T ss_pred cccCEEEeCCCC---EEEEcCccHHhccCCCCCHHHHHHHHHHHHhCCCcccc--cc----CCHHHHHHHHHHHHhCCCc
Confidence 445555555564 39997644 567789999998887643111110 01 1233456777777776431
Q ss_pred ----CCCcEEEeCChHHHHHHHHHHH-hcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcCc--------
Q 038499 138 ----QEDAMIFCGSGTTAAIKRLQEV-MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSLA-------- 203 (609)
Q Consensus 138 ----~~~~vift~sGttaal~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G~-------- 203 (609)
.-+.|.|+.|||.+. ...+++ .... ...-+++ +..|+.-...||+.. .++...+.
T Consensus 124 ~~~~~~~~v~f~~sGSEAv-E~AlKlAr~~~---------~~~g~~~-r~~ii~~~~syHG~t~gals~~~~~~~~~~~~ 192 (472)
T PRK08742 124 DGRAPLSKVFYADNGSAGV-EVALKMAFHYF---------HNRGEHR-RTRFIALENGYHGETIGALAVGDIPLYRRVYA 192 (472)
T ss_pred ccCCCCCEEEEeCCchHHH-HHHHHHHHHHH---------HhcCCCC-CcEEEEECCCcCCCchhhhhccCCcccccccC
Confidence 123899998888862 222222 1100 0000122 235666555565543 22222111
Q ss_pred ----eEEEEecCCC-----C-------CCCHHHHHHHHhhhccCCCceEEEEec-ccCccccccC----HHHHHHHHHHh
Q 038499 204 ----EVVEIGLDDD-----G-------LLDIEALRSKLELYKDAKRPILGSFSA-CSNVTGIYSD----TRSIARLLHQY 262 (609)
Q Consensus 204 ----~vv~v~~~~~-----g-------~ld~e~L~~al~~~~~~~~~~lv~~s~-~sn~TG~~~d----l~~I~~la~~~ 262 (609)
.+..++.... + ..+++.+++.+.+ ..+++..+++.. ..+..|.+.+ ++++.++|++|
T Consensus 193 p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~iAAvI~EPviqg~gG~~~~p~~fl~~lr~lc~~~ 270 (472)
T PRK08742 193 PLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQ--SPGEICALILEPRLQCAGGMRMHHPAYLRRARELCDAH 270 (472)
T ss_pred CCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHh--CCCceEEEEEccccccCCCcccCCHHHHHHHHHHHHHc
Confidence 2233333211 1 0135677777753 124667777877 4777788765 67899999999
Q ss_pred CCeEEEeccccC-Ccccc--cCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccc
Q 038499 263 GGFACFDFAASG-PYVEI--DVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFN 338 (609)
Q Consensus 263 g~~vivD~A~~~-~~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~ 338 (609)
|+++|+|+++.+ |-... -....+ -..|+++++ |.+||.. .+|.+++++++. +.+.+.... +.
T Consensus 271 gillI~DEV~TGfGRtG~~~a~e~~g-v~PDiv~~g--Kgl~gG~~Plaav~~~~ei~--~~~~~~~~~-~~-------- 336 (472)
T PRK08742 271 GAFLIADEIATGFGRTGTLFACEQAG-VMPDLLCLS--KGLTGGFLPLSAVLATQQLY--DAFLDDSRE-RA-------- 336 (472)
T ss_pred CCEEEEechhhCCCCCccchHHHhcC-CCCCEEEEc--ccccCCCCCcceeeccHHHH--HHhhccCcc-Cc--------
Confidence 999999999763 32210 011110 146999886 9997653 589999998883 222110000 00
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---hCCCCce-EEeCCCCCCCcce
Q 038499 339 EKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER---LLPNQNI-KILGNTSTKRQAI 414 (609)
Q Consensus 339 ~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~---L~~~p~i-~v~~~~~~~r~~~ 414 (609)
+. ...-..|.|--.+...+.++.+ +. +.+.++.+++.+++.+. +++.|.+ .+.+ +...
T Consensus 337 -----~~---h~~T~~gnpl~~Aaa~a~L~~i--~~---~~l~~~~~~~g~~l~~~~~~~~~~~~i~dvRG-----~Gl~ 398 (472)
T PRK08742 337 -----FL---HSHSYTGNPLACAAALATLDIF--AD---DDVIARNQPTAARMTQLAAQIGEHPHVADVRQ-----AGMV 398 (472)
T ss_pred -----cC---cCCCCCccHHHHHHHHHHHHHH--HH---CCHHHHHHHHHHHHHHHHHHHhcCCCeeeEec-----cceE
Confidence 00 0000123333333334445544 22 22334444444444443 3334432 2222 2223
Q ss_pred EEEEeccCCCCCcCCCCCCCCCCCCCC-----hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhC
Q 038499 415 LSFNIHSSTINSSLGENTKTETDKPLH-----GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKG 489 (609)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~~~l~-----~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~ 489 (609)
+.+.+.. +.. ...... ...+.+.+.+ .||.+++.
T Consensus 399 ~giel~~-~~~----------~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~----------------------------- 437 (472)
T PRK08742 399 VAFELTR-GGN----------KRTPFPPAARVGLHAYRAALA-RGVVLRPL----------------------------- 437 (472)
T ss_pred EEEEecc-Ccc----------ccccCCchhHHHHHHHHHHHH-CCeEEEec-----------------------------
Confidence 3333332 110 000111 2356666655 59988621
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 490 ~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+.|||.+++..|++|+++++++|+++++.
T Consensus 438 -----g~vi~~~PpL~it~~ei~~~~~~l~~~l~~ 467 (472)
T PRK08742 438 -----GDVLYWMPPYCVDEAQLALLADTTRHAIDE 467 (472)
T ss_pred -----CCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 257999999999999999999999998865
|
|
| >COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-10 Score=120.12 Aligned_cols=220 Identities=18% Similarity=0.187 Sum_probs=141.7
Q ss_pred CCCccccCCCCCCceEEecCCCC-CC-----ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS-GR-----SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~-g~-----~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.++++.+..|++ |.||..+ || .++.|.+++.+.+..-. + .|. .++..-++.+.|.+.++.-
T Consensus 42 g~Ga~l~DvDGn~---YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~-------~-fg~-Pte~Ei~~Aell~~~~p~~ 109 (432)
T COG0001 42 GKGAYLTDVDGNE---YIDYVLGWGPLILGHAHPAVVEAVQEQLERGL-------S-FGA-PTELEVELAELLIERVPSI 109 (432)
T ss_pred ccCCeEEeCCCCE---eeehhccCcccccCCCCHHHHHHHHHHHHhcC-------C-CCC-CCHHHHHHHHHHHHhcCcc
Confidence 4556666666653 8888744 33 47889999998886421 1 121 2344556668888888764
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH-c--Cc-----------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ-S--LA----------- 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-~--G~----------- 203 (609)
+.|-|+.|||.|.+..+--+.+ .-.-| .|+.-.-.||.....+.. . |+
T Consensus 110 --e~vrfvnSGTEAtmsAiRlARa--------------~TgR~--kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gv 171 (432)
T COG0001 110 --EKVRFVNSGTEATMSAIRLARA--------------YTGRD--KIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGV 171 (432)
T ss_pred --cEEEEecchhHHHHHHHHHHHH--------------hhCCC--eEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCC
Confidence 2789998999986655533322 11222 466655556655544432 2 11
Q ss_pred ------eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc
Q 038499 204 ------EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 204 ------~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~ 273 (609)
.+..+|.+ |++++++++++. .++...|++..+...-|.+.| +++|.++|++||+++|+|+...
T Consensus 172 p~~~a~~ti~~~yN-----D~~al~~~~~~~--g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViT 244 (432)
T COG0001 172 PADVAKHTLVLPYN-----DLEALEEAFEEY--GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVIT 244 (432)
T ss_pred ChhhhccEEEecCC-----CHHHHHHHHHHc--CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchh
Confidence 24445554 899999999853 246778888888888899887 6679999999999999999865
Q ss_pred CCccccc-CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCC
Q 038499 274 GPYVEID-VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPS 324 (609)
Q Consensus 274 ~~~~~id-~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~ 324 (609)
+.-.... ......-..|+.+++ |.+||...+|++-.++++ .+.+.|.
T Consensus 245 GFR~~~gGaq~~~gi~PDlttlG--KiIGGGlP~ga~gGr~ei--M~~~~p~ 292 (432)
T COG0001 245 GFRVALGGAQGYYGVEPDLTTLG--KIIGGGLPIGAFGGRAEI--MEQLAPL 292 (432)
T ss_pred hcccCCcccccccCcCcchhhhh--hhhcCCcceeeeccHHHH--HhhhCCC
Confidence 4322211 001000124665554 999988889999999999 5555443
|
|
| >PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.7e-10 Score=125.10 Aligned_cols=205 Identities=15% Similarity=0.124 Sum_probs=121.6
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
-|+|..++ |-.++.|.+++.+++.... +. + .......++.+++.+.+.. .+ .+.|+.+|+.+.
T Consensus 51 ~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~~~---~~--~----~~~~~~~~la~~L~~~~~~-~~-~v~~~~sGseA~ 119 (426)
T PRK00062 51 EYIDYVGSWGPMILGHAHPEVVEAVIEAAEKGL---SF--G----APTELEVELAELVIELVPS-IE-MVRMVNSGTEAT 119 (426)
T ss_pred EEEEcccchhhhhcCCCCHHHHHHHHHHHHhCC---cC--C----CCCHHHHHHHHHHHHhCCC-CC-EEEEecCHHHHH
Confidence 47787543 4678899999998886521 11 1 1123455777888877642 33 788987777753
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcCc------------eEEEEecC--CCCCCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSLA------------EVVEIGLD--DDGLLD 217 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G~------------~vv~v~~~--~~g~ld 217 (609)
...+-.+.. ....+ .|+.....||+... .+...|. ..+.+..+ ..-.-|
T Consensus 120 e~Aik~a~~--------------~~g~~--~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 183 (426)
T PRK00062 120 MSAIRLARG--------------YTGRD--KIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYND 183 (426)
T ss_pred HHHHHHHHH--------------HhCCC--eEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCC
Confidence 333322221 11122 45655555665432 2221110 00001000 000137
Q ss_pred HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccccCCCCC--CCCccE
Q 038499 218 IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQ--TDGYDA 291 (609)
Q Consensus 218 ~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~--~~~~D~ 291 (609)
++++++.+.+. .+++.++++......+|.+.| +++|.++|++||+++|+|+++.+.... .+-... .-..|+
T Consensus 184 ~~~l~~~i~~~--~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~G~r~g-~~~~~~~~~~~pDi 260 (426)
T PRK00062 184 LEAVEELFEEY--GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVA-LGGAQGYYGVTPDL 260 (426)
T ss_pred HHHHHHHHHhC--CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechhccccC-CccHHHHhCCCcch
Confidence 89999988642 246778899988888999988 899999999999999999998732111 110000 012465
Q ss_pred EEEcCCCCCCCCCCcEEEEEechh
Q 038499 292 IFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 292 v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
+ ++.|.+++...+|++++++++
T Consensus 261 ~--~~gK~l~~G~p~ga~~~~~~i 282 (426)
T PRK00062 261 T--TLGKIIGGGLPVGAFGGRREI 282 (426)
T ss_pred H--hhhhHhhCCCcceeeeEHHHH
Confidence 4 556999864447888888887
|
|
| >PRK07480 putative aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.9e-10 Score=121.06 Aligned_cols=360 Identities=13% Similarity=0.009 Sum_probs=192.6
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++... ++.... . ........++.+.|++.++.+
T Consensus 39 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~---~~~~~~-~-~~~~~~~~~lae~L~~~~p~~ 110 (456)
T PRK07480 39 AEGVYLWDSEGN---KILDGMAGLWCVNVGYGRKELADAAARQMREL---PYYNTF-F-KTTHPPAIELAAKLAEVAPPG 110 (456)
T ss_pred ceeeEEEeCCCC---EEEEccchHHHhcCCCCCHHHHHHHHHHHHhc---CCcccc-c-ccCCHHHHHHHHHHHHhCCCC
Confidence 555666666675 39998654 666789999999888653 111000 0 012345667778888887643
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcCc------------e
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSLA------------E 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G~------------~ 204 (609)
-+ .+.|+.||+++. ...+++.- ... .. .=+++ +..|+.-...||+.. ..+...|. .
T Consensus 111 ~~-~v~f~~SGseA~-e~AlklAr-~~~---~~----~g~~~-r~~ii~~~~~yHG~tl~a~s~~g~~~~~~~~~~~~~~ 179 (456)
T PRK07480 111 FN-HVFFTNSGSEAN-DTVLRMVR-HYW---AL----KGKPQ-KKVIISRKNGYHGSTVAGASLGGMKYMHEQGDLPIPG 179 (456)
T ss_pred cC-EEEEeCCcHHHH-HHHHHHHH-HHH---Hh----cCCCC-CcEEEEECCCcCCcchhhhhccCChhhhcccCCCCCC
Confidence 33 899998888863 22222210 000 00 00123 335666555555532 22221111 1
Q ss_pred EEEEecCCCC----CCC--------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 205 VVEIGLDDDG----LLD--------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 205 vv~v~~~~~g----~ld--------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
+..++..... ..+ +++|++.+.+ ...+++..|++..++...|.+.+ +++|.++|++||+++|+
T Consensus 180 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~vAAvi~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~llI~ 258 (456)
T PRK07480 180 IVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILE-LGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDILLVA 258 (456)
T ss_pred CeecCCCcccccccCCChHHHHHHHHHHHHHHHHh-cCCCcEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEE
Confidence 2222211100 001 3566655532 11246778889888888899877 78999999999999999
Q ss_pred ecccc-CCcccc--cCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCC--CCC-ccCCCceEeeccccccc
Q 038499 269 DFAAS-GPYVEI--DVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSF--PPS-TCGGGTVNYVNGFNEKD 341 (609)
Q Consensus 269 D~A~~-~~~~~i--d~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~--~p~-~~ggg~v~~~~~~~~~~ 341 (609)
|+++. +|-... -....+ -..|+++++ |.++|.. .+|.+++++++. +.+ .+. ...++|
T Consensus 259 DEV~tGfGRtG~~~a~~~~g-v~PDiv~~g--K~l~gG~~Pi~av~~~~~i~--~~~~~~~~~~~~~~T----------- 322 (456)
T PRK07480 259 DEVICGFGRTGEWFGSQHFG-IKPDLMTIA--KGLTSGYIPMGAVGVGDRVA--EVLIEEGGEFNHGFT----------- 322 (456)
T ss_pred echhhCCCcCcchhhhhhcC-CCCCeeeee--hhhccCCccceEEEEcHHHH--HHHhcCCCCcccCCC-----------
Confidence 99975 322210 111111 135887775 9998642 478888888873 222 110 000111
Q ss_pred ccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHhCC---CCce-EEeCCCCCCCcceEE
Q 038499 342 TLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQE-ETYIERALERLLP---NQNI-KILGNTSTKRQAILS 416 (609)
Q Consensus 342 ~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~-~~l~~~~~~~L~~---~p~i-~v~~~~~~~r~~~~~ 416 (609)
..|.|-..+...+.++.. +.. .+.++. +++.+++.+.|++ .|.+ .+-+ ...++.
T Consensus 323 -----------~~gnpl~~Aaa~a~L~~l--~~~---~l~~~~~~~~g~~l~~~l~~l~~~~~i~~vrG-----~Glm~g 381 (456)
T PRK07480 323 -----------YSGHPVAAAVALANLRIL--RDE---GIVERVRDDTGPYLQKRLRELADHPLVGEVRG-----VGLVGA 381 (456)
T ss_pred -----------CCcCHHHHHHHHHHHHHH--HhC---CHHHHHHHHHHHHHHHHHHHhhcCCCeeeEEe-----ecceEE
Confidence 134444444445555544 222 233344 2445555555543 3321 2222 122333
Q ss_pred EEeccCCCCCcCCCCCCCCCCCCCC----hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCC
Q 038499 417 FNIHSSTINSSLGENTKTETDKPLH----GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVG 492 (609)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~~~l~----~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~ 492 (609)
+.+.. +.. ....+.. ...+...+.+ .||.+.+.
T Consensus 382 ie~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~-------------------------------- 418 (456)
T PRK07480 382 IELVK-DKA---------TRERFEAGGGVGTICRDHCFA-NGLIMRAV-------------------------------- 418 (456)
T ss_pred EEEec-ccc---------ccccCcchhhHHHHHHHHHHH-CCcEEeec--------------------------------
Confidence 33322 100 0000111 2345555655 58887520
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 493 VKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 493 ~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.+.+|+++++.+|++|+++++++|++++...
T Consensus 419 --~~~l~~~Ppl~it~~eid~~~~~l~~al~~~ 449 (456)
T PRK07480 419 --GDRMIISPPLVITHAEIDELVEKARKALDAT 449 (456)
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1568999999999999999999999988764
|
|
| >PRK07483 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-09 Score=119.15 Aligned_cols=372 Identities=14% Similarity=0.098 Sum_probs=194.4
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++.... ..+.. ....+...++.+.|.+++...
T Consensus 19 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~av~~ql~~~~-~~~~~-----~~~~~~~~~lae~L~~~~p~~ 89 (443)
T PRK07483 19 GEGIYLIDATGK---RYLDASGGAAVSCLGHSHPRVIAAIHAQIDRLA-YAHTS-----FFTTEPAEALADRLVAAAPAG 89 (443)
T ss_pred ceEEEEEeCCCC---EEEEcCccHhhhccCCCCHHHHHHHHHHHHhcc-Ccccc-----ccCCHHHHHHHHHHHHhCCCC
Confidence 555667666665 39997653 5667899999999886531 11111 011334556777787776533
Q ss_pred CCCcEEEeCChHHHHHHHHHHH-hcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEV-MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G------------~ 203 (609)
.+ .+.|+.|||.+ +...+++ .... + ..-+++ +..|+.-...||... .+....| .
T Consensus 90 ~~-~v~f~~sGsEA-ve~AlklAr~~~-----~----~~g~~~-r~~Ii~~~~~YHG~t~~a~s~s~~~~~~~~~~p~~~ 157 (443)
T PRK07483 90 LE-HVYFVSGGSEA-VEAALKLARQYF-----V----EIGQPQ-RRHFIARRQSYHGNTLGALAIGGNAWRREPFAPLLI 157 (443)
T ss_pred CC-EEEEcCCcHHH-HHHHHHHHHHHH-----H----hcCCCC-CcEEEEECCCcCCcCHHHhhhcCCcccccccCCCCC
Confidence 33 89999888886 3322222 1100 0 000133 335666555555443 2222111 1
Q ss_pred eEEEEecCCCCC-C------------CHHHHHHHHhhhccCCCceEEEEecccC-ccccccC----HHHHHHHHHHhCCe
Q 038499 204 EVVEIGLDDDGL-L------------DIEALRSKLELYKDAKRPILGSFSACSN-VTGIYSD----TRSIARLLHQYGGF 265 (609)
Q Consensus 204 ~vv~v~~~~~g~-l------------d~e~L~~al~~~~~~~~~~lv~~s~~sn-~TG~~~d----l~~I~~la~~~g~~ 265 (609)
.+..++...... . .++++++++.. ...+++..|++..+.. ..|.+.+ +++|.++|++||++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~iAAvivEPiqg~~gG~~~~~~~fl~~lr~lc~~~gil 236 (443)
T PRK07483 158 EAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILE-LGPDTVAAFVAETVVGATAGAVPPVPGYFKRIREVCDRYGVL 236 (443)
T ss_pred CCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHh-cCCCceEEEEEeCcccCcCCeEeCCHHHHHHHHHHHHHhCCE
Confidence 123333211000 0 13566666642 1124567888887775 3577765 78899999999999
Q ss_pred EEEeccccCCcccccCCCC--CCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccc
Q 038499 266 ACFDFAASGPYVEIDVRSG--QTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342 (609)
Q Consensus 266 vivD~A~~~~~~~id~~~~--~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (609)
+|+|+++.+....-.+-.. ..-..|+++++ |.++|.. .+|.+++++++. +.+.+. .+...
T Consensus 237 lI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~g--K~l~gG~~Pi~av~~~~~i~--~~~~~~---~~~~~---------- 299 (443)
T PRK07483 237 LILDEVMCGMGRTGTLFACEEDGVAPDLVTIA--KGLGAGYQPIGAVLASDRIY--DAIADG---SGFFQ---------- 299 (443)
T ss_pred EEEecceeCcccCcHHHHHhhcCCCCCeeeeh--hhhccCccccEEEEEcHHHH--HHHhcC---CCccc----------
Confidence 9999997632111111000 00145888885 9998763 589999998883 333211 00000
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC----CCCce-EEeCCCCCCCcceEEE
Q 038499 343 LYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL----PNQNI-KILGNTSTKRQAILSF 417 (609)
Q Consensus 343 ~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~----~~p~i-~v~~~~~~~r~~~~~f 417 (609)
...-..|.|--.....+.++.+ + .+.+.++.+++.+++.+.|+ +.|.+ ++-+ +..++.+
T Consensus 300 ------h~~T~~gnpl~~aaa~a~l~~i--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vRG-----~Glm~gi 363 (443)
T PRK07483 300 ------HGHTYLGHATACAAALAVQRVI--A---EDGLLANVRARGEQLRARLRERLGQHPHVGDIRG-----RGLFVGV 363 (443)
T ss_pred ------cCCCCCCCHHHHHHHHHHHHHH--H---hcCHHHHHHHHHHHHHHHHHHHHhcCCCeeeEee-----cccEEEE
Confidence 0000123333333334444443 2 22344555555555555554 34322 1222 2233333
Q ss_pred EeccCCCCCcCCCCCCCCCCCC-CChHHHHHHHhhhcCcEeccCcccC-ChhhhhhcCCChhHHHHHHHHHhhCCCCCCC
Q 038499 418 NIHSSTINSSLGENTKTETDKP-LHGPFVATLLNDLFGIQARGGCACA-GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKP 495 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~-l~~~~v~~~L~~~~GI~v~~G~~ca-~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~ 495 (609)
.+.. +.. ........ -....+.+.+.+ .|+.+.+...+. +. .+
T Consensus 364 e~~~-~~~------~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~~~~~~~~---------------------------~~ 408 (443)
T PRK07483 364 ELVA-DRA------TKAPFDPALKLHARIKREAMA-RGLMVYPMGGTIDGV---------------------------RG 408 (443)
T ss_pred EEee-ccc------ccCCCCchhhHHHHHHHHHHH-CCcEEEecCccccCC---------------------------CC
Confidence 3322 100 00000000 012456666766 599887421110 00 13
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 496 GWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 496 g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+.+|+..++..|++|+++++++|++++...
T Consensus 409 ~~l~~~PpL~it~~eid~~~~~l~~~l~~~ 438 (443)
T PRK07483 409 DHVLLAPPFIITAAQIDEIVERLGDAIDAA 438 (443)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999988753
|
|
| >COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.7e-10 Score=114.75 Aligned_cols=317 Identities=15% Similarity=0.122 Sum_probs=197.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 116 GQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 116 ~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
+.+.-+..-+....++++.|.+-.+.-++- ++|++-..+..+.. +...++..|+|+...|+...
T Consensus 115 SQGrLqaLfefQtlv~dLTGm~VANASm~D--eaTAaAEAm~ma~r--------------~~k~k~~~~~V~~~vhpqt~ 178 (450)
T COG0403 115 SQGRLEALFEFQTLVADLTGLDVANASMLD--EATAAAEAMLMAKR--------------VTKKKRNKFLVPKDVHPQTL 178 (450)
T ss_pred hhHHHHHHHHHHHHHHHHhCCCcccchhhh--hHHHHHHHHHHHHH--------------hhcCcCceEEecCCCCHHHH
Confidence 344556777889999999998755344443 55655454444432 22333347999999999988
Q ss_pred HHHHH----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccc-cccCHHHHHHHHHHhCCeEEEec
Q 038499 196 LSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTG-IYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 196 ~~~~~----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG-~~~dl~~I~~la~~~g~~vivD~ 270 (609)
..++. .|.+|+.++.+ |+++|+++ .. +.+..+++..|+ ..| ...|+.+|.+.+|++|+++++=.
T Consensus 179 ~Vl~Tra~~~g~~i~~~~~~-----d~~~l~~~-~~----~~~~gv~vQyP~-~~G~~~~d~~~l~~~~h~~~al~~v~a 247 (450)
T COG0403 179 DVLRTRAEGLGIEIEVVDAD-----DLDDLESA-DD----GDVFGVLVQYPN-TFGIVEEDLRALIEAAHSAGALVIVAA 247 (450)
T ss_pred HHHHhhcccCceEEEEeccc-----hhhhhhhc-cc----cCeEEEEEecCC-CCCccchhHHHHHHHHhhcCCEEEEEe
Confidence 77764 46788877766 78888888 42 467788888886 667 66779999999999999877532
Q ss_pred c-ccCCcccccCCCCCCCCccEEEEcCCCC-----CCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 271 A-ASGPYVEIDVRSGQTDGYDAIFLSTHKF-----LGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 271 A-~~~~~~~id~~~~~~~~~D~v~~S~hK~-----lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
- -+.+.. ++-...|+|+++.+.+-+ ||||. +|++.+++++ .++++--..| -+++............
T Consensus 248 DplaL~LL----~pPGe~GADIvvG~~QrfGvPmgfGGPh-ag~fA~~~~~--~R~mPGRlVG-~S~D~~G~~A~rLaLQ 319 (450)
T COG0403 248 DPLALGLL----KPPGEFGADIVVGSAQRFGVPMGFGGPH-AGYFAVKDEF--KRQMPGRLVG-VSVDAAGKRAFRLALQ 319 (450)
T ss_pred chhHhhcc----CCccccCCceEEecCcccCCCcCCCCcc-eeeeeEhHhH--hhcCCCceee-eeecCCCCchhhhhHH
Confidence 1 111111 111123899999999865 67777 7999999999 4555433333 2221110000011122
Q ss_pred cccccccccCCChhHHHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcceEEEE
Q 038499 345 LEDIEERESGGTPQVIQM-----IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAILSFN 418 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~-----~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~~~f~ 418 (609)
......|.+-.|.||... ..+++-.......|...|.++..+++.++.++|+++. |++++... ...-+.+.
T Consensus 320 TREQHIRReKATSNICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g~~~~~~~---fFdt~~v~ 396 (450)
T COG0403 320 TREQHIRREKATSNICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAGVELVFDH---FFDTFTVR 396 (450)
T ss_pred HHHHHHhhhccchhhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCceEecccc---ceeeEEEe
Confidence 222344555667776432 1233333333556889999999999999999999653 57776431 11122222
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEE
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWT 498 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~i 498 (609)
+.. -....+.+.. ...||.++. + .+..+
T Consensus 397 ~~~------------------~~~~~l~~~~-~~~G~~L~~--------------~-------------------~~~~~ 424 (450)
T COG0403 397 VPE------------------EVAEALLAAA-IAGGINLRR--------------V-------------------DADTV 424 (450)
T ss_pred cch------------------hHHHHHHHHH-HhcCCceee--------------e-------------------cCCce
Confidence 211 0123333333 234665551 1 14577
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHH
Q 038499 499 RISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 499 Rls~~~~~t~eeid~ll~al~~v~ 522 (609)
=+++.-.+|+++++.+++++....
T Consensus 425 ~ia~tEt~t~~~i~~l~~~~~~~~ 448 (450)
T COG0403 425 LIALTETTTKEDIDALVAAFGGVN 448 (450)
T ss_pred EEEeecccCHHHHHHHHHHHhhhc
Confidence 888888899999999999987653
|
|
| >PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-09 Score=117.49 Aligned_cols=358 Identities=16% Similarity=0.138 Sum_probs=192.1
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++...... +.. . ..+....++.+.+.+.+...
T Consensus 52 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~~~~~-~~~-~----~~~~~~~~la~~L~~~~p~~ 122 (464)
T PRK06938 52 ARGIYVEDVEGR---QFIDCLAGAGTLALGHNHPVVIEAIQQVLADELPL-HTL-D----LTTPVKDQFVQDLFASLPEA 122 (464)
T ss_pred ccccEEEeCCCC---EEEEccCCccccccCCCCHHHHHHHHHHHHhhhcc-ccc-c----cCCHHHHHHHHHHHHhCccc
Confidence 445555555564 49997544 566789999999887532111 110 0 11233445556666665422
Q ss_pred C--CCcEEEe-CChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC-----------
Q 038499 138 Q--EDAMIFC-GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL----------- 202 (609)
Q Consensus 138 ~--~~~vift-~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G----------- 202 (609)
- .+.+.|+ .||+.+ +...+++-- .-.|.+ .|+.-...||+.. ......+
T Consensus 123 ~~~~~~v~f~~~SGSEA-ve~AlklAr--------------~~tgr~-~ii~~~~~yHG~t~~als~t~~~~~~~~~~~~ 186 (464)
T PRK06938 123 FAREAKIQFCGPTGTDA-VEAALKLVK--------------TATGRS-TVLSFQGGYHGMSQGALSLMGNLGPKKPLGAL 186 (464)
T ss_pred ccccceEEEeCCCcHHH-HHHHHHHHH--------------HhhCCC-eEEEECCccCCccHHHHhhcCCccccccCCCC
Confidence 1 1257676 478775 333333211 012333 4555555555543 2222111
Q ss_pred -ceEEEEecCCCCC------------CCHHHHHHHHhhhcc-CCCceEEEEecccCccccccC----HHHHHHHHHHhCC
Q 038499 203 -AEVVEIGLDDDGL------------LDIEALRSKLELYKD-AKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGG 264 (609)
Q Consensus 203 -~~vv~v~~~~~g~------------ld~e~L~~al~~~~~-~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~ 264 (609)
..+..++...... .+++.+++.+.+... .+++..+++..+....|.+.| ++++.++|++||+
T Consensus 187 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPiqg~gG~~~p~~~yl~~lr~lc~~~gi 266 (464)
T PRK06938 187 LPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGVIPAPIEWLRGLRRITEEAGI 266 (464)
T ss_pred CCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCC
Confidence 1234444322110 136778888863211 125678888888887788765 6789999999999
Q ss_pred eEEEeccccCC-ccc--ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccc
Q 038499 265 FACFDFAASGP-YVE--IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKD 341 (609)
Q Consensus 265 ~vivD~A~~~~-~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~ 341 (609)
++|+|+++.+. -.. .-....+ -.+|+++++ |.+||...+|.+++++++ +.+.+...+ +|
T Consensus 267 LlI~DEV~tGfGRtG~~~a~e~~g-v~PDiv~~g--KglggG~PlsAv~~~~~~---~~~~~~~~~-~T----------- 328 (464)
T PRK06938 267 PLIVDEIQSGFGRTGKMFAFEHAG-IIPDVVVLS--KAIGGSLPLAVVVYREWL---DTWQPGAHA-GT----------- 328 (464)
T ss_pred EEEEeccccCCCcCcHHHHHHhcC-CCCCEEEee--ccccCCCceEEEeehhHh---hccCCCCCC-CC-----------
Confidence 99999997642 111 0011110 135999886 999876668888888765 222211111 00
Q ss_pred ccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCce-EEeCCCCCCCcceEE
Q 038499 342 TLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNI-KILGNTSTKRQAILS 416 (609)
Q Consensus 342 ~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i-~v~~~~~~~r~~~~~ 416 (609)
..|.|--.+...+.++.+. .+.+.++.+++.+++.+.|++ .|.+ ++-+ ....+.
T Consensus 329 -----------~~gnpla~Aaa~a~L~~l~-----~~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG-----~Glm~g 387 (464)
T PRK06938 329 -----------FRGNQMAMAAGSATLRYIK-----EHRLAEHAAAMGERLREHLRQLQRDYPQLGDVRG-----RGLMLG 387 (464)
T ss_pred -----------CCcCHHHHHHHHHHHHHHH-----HhHHHHHHHHHHHHHHHHHHHHHHhCCCeeeeec-----cceEEE
Confidence 1233333333344444432 234556666666666666654 3322 2222 223333
Q ss_pred EEeccCCCCCcCCCCCCCCC-CCC---CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCC
Q 038499 417 FNIHSSTINSSLGENTKTET-DKP---LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVG 492 (609)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~-~~~---l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~ 492 (609)
+.+.. +.. ..+.. ... .....+...+.+ .|+.+.++. +
T Consensus 388 ie~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~Gll~~~~g----~-------------------------- 429 (464)
T PRK06938 388 VEIVD-PQG------EPDALGHPPANGELASLIQRECLR-RGLILELGG----R-------------------------- 429 (464)
T ss_pred EEecc-Ccc------cccccccCCccHHHHHHHHHHHHH-CCeEEeecC----C--------------------------
Confidence 43322 100 00000 000 012456666655 598876321 0
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 493 VKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 493 ~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..+.+|+.+++.+|++|++++++++++++..
T Consensus 430 -~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~ 460 (464)
T PRK06938 430 -HGSVVRFLPPLIITAEQIDEVAEIFAEAVAA 460 (464)
T ss_pred -CCCEEEEECCCccCHHHHHHHHHHHHHHHHH
Confidence 1267999999999999999999999998865
|
|
| >COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-10 Score=120.97 Aligned_cols=363 Identities=16% Similarity=0.142 Sum_probs=204.9
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCC-ccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPF-YGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG 136 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~-~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~ 136 (609)
+.+.++.+-.|++ |+|-.++ |-..+.+.+++.+++..+ |.++ +..+.+-..++.++|++....
T Consensus 33 aeG~yl~d~~G~r---~lDg~sg~W~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~-------~~~t~~Pa~~LA~~L~~~aP~ 102 (449)
T COG0161 33 AEGVYLTDIDGRR---YLDGMSGLWCVNHGHGRPEIAEAIKKQLDKLPHVMF-------GGFTHEPAIELAEKLAELAPE 102 (449)
T ss_pred cceeEEEeCCCCE---EEecccHHHHhhcCcCCHHHHHHHHHHHHhCCchhh-------cccCCchHHHHHHHHHHhCCC
Confidence 4556777777764 8888776 556788999999988764 1111 111222256778888888884
Q ss_pred CCCCcEEEeCChHHH---HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcC----------
Q 038499 137 GQEDAMIFCGSGTTA---AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSL---------- 202 (609)
Q Consensus 137 ~~~~~vift~sGtta---al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G---------- 202 (609)
..=+.|.|+.|||++ ||+++.+-.... =+|+ |..++.-...||+.. .+....|
T Consensus 103 ~~l~~vFf~~sGSeAvEtAlKma~qY~~~~------------G~p~-r~~~Isr~~gYHG~T~ga~Sv~g~~~~~~~~~~ 169 (449)
T COG0161 103 GGLDHVFFTDSGSEAVETALKMALQYWRAR------------GQPQ-RKKFISRRNGYHGDTLGAMSVGGPVALRHAFYD 169 (449)
T ss_pred CCccEEEEeCCchHHHHHHHHHHHHHHHhc------------CCCc-ceEEEEeccCcCcccchheeccCchhhhhhhcc
Confidence 322499999999987 455444332100 1333 445666666666543 2221111
Q ss_pred ---ceEEEEecCC------CCC------CCHHHHHHHHhhhccCCCceEEEEecccCc-cccccC----HHHHHHHHHHh
Q 038499 203 ---AEVVEIGLDD------DGL------LDIEALRSKLELYKDAKRPILGSFSACSNV-TGIYSD----TRSIARLLHQY 262 (609)
Q Consensus 203 ---~~vv~v~~~~------~g~------ld~e~L~~al~~~~~~~~~~lv~~s~~sn~-TG~~~d----l~~I~~la~~~ 262 (609)
..+..++... .+. -.+++|++.|.+.. .++...+++.....- +|++.| +++|.++|++|
T Consensus 170 ~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g-~~~IAAfI~EPv~g~agG~~~pp~~Yl~~vr~iC~ky 248 (449)
T COG0161 170 PLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHG-PETIAAFIVEPVVGGAGGMLVPPPGYLKRVREICDKY 248 (449)
T ss_pred ccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcC-cccEEEEEecccccccCCcccCChHHHHHHHHHHHHc
Confidence 1233333221 111 23567788777531 134557777777666 888877 78999999999
Q ss_pred CCeEEEeccccC-CcccccCCCCCC--CCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccc
Q 038499 263 GGFACFDFAASG-PYVEIDVRSGQT--DGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFN 338 (609)
Q Consensus 263 g~~vivD~A~~~-~~~~id~~~~~~--~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~ 338 (609)
|+++|+|++..+ |-.. .|-..+. -..|+++.+ |.+.|. ..+|.++++++++. .+..-. .+. |.
T Consensus 249 ~ILlI~DEV~tGFGRTG-~~FA~e~~gi~PDi~~~a--KGLT~GY~Pl~a~l~~~~I~~--~~~~~~--~~~--f~---- 315 (449)
T COG0161 249 GILLIADEVATGFGRTG-KMFACEHAGIVPDILCLA--KGLTGGYLPLSAVLTSDRIYE--AFSDGD--AGA--FM---- 315 (449)
T ss_pred CcEEEeecceeCCCcCc-hhhhhhhcCCCCCeeeec--ccccccchhhHhHhhhHHHHH--HHhccc--CCe--ec----
Confidence 999999998543 3211 1111000 135888887 988654 34788888888842 221100 111 00
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC-CCceEEeCCCCCCCcceE-E
Q 038499 339 EKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP-NQNIKILGNTSTKRQAIL-S 416 (609)
Q Consensus 339 ~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~-~p~i~v~~~~~~~r~~~~-~ 416 (609)
..+. ..|.|--.+...+.++++ + .+.+.++.+++..++.+.|++ +++...++.. ...+.+ .
T Consensus 316 -HG~T---------YsghPlacAaAla~L~i~--e---~e~l~~~~~~~~~~l~~~L~~~l~~~p~VgdV--R~~Gli~~ 378 (449)
T COG0161 316 -HGHT---------YSGNPLACAAALANLDIL--E---EEDLLERVAEIGAYLQAGLQAALADHPLVGDV--RGLGLIGA 378 (449)
T ss_pred -cCCc---------cccCHHHHHHHHHHHHHH--H---hcCHHHHHHHHHHHHHHHHHHhcccCCcEEEe--eccceEEE
Confidence 0011 123333333333444443 2 345566777777777777765 3322233321 222333 3
Q ss_pred EEeccCCCCCcCCCCCCCCCCCCCC---hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 417 FNIHSSTINSSLGENTKTETDKPLH---GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~~~l~---~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
+.+.. +.. ...++. ...+.+.+.+ .|+.+|+.
T Consensus 379 iElv~-d~~----------t~~~f~~~~~~~~~~~~~e-~Gl~iRp~--------------------------------- 413 (449)
T COG0161 379 IELVA-DKA----------TKTPFEARVGARVRAAALE-RGLLIRPL--------------------------------- 413 (449)
T ss_pred EEEec-ccc----------cccchhhhHHHHHHHHHHH-CCeEEeec---------------------------------
Confidence 33333 110 111111 3455566655 59999942
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 494 KPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 494 ~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
...+=++.++-.|++|++++++++.+.++...
T Consensus 414 -g~~i~~~PPliit~~eid~l~~~l~~al~~~~ 445 (449)
T COG0161 414 -GDVIYLMPPLIITREEIDELVDALREALDETL 445 (449)
T ss_pred -CCEEEEcCCccCCHHHHHHHHHHHHHHHHHHH
Confidence 14678888999999999999999999887643
|
|
| >PRK06917 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.3e-09 Score=116.76 Aligned_cols=370 Identities=13% Similarity=0.054 Sum_probs=194.3
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..++ |-..+.|.+++.+++... ++...+ ....+...++.+.|.+.+...
T Consensus 20 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~hp~v~~Ai~~ql~~~---~~~~~~---~~~~~~~~~lae~L~~~~p~~ 90 (447)
T PRK06917 20 GKGVYLYDQNGN---KYFDGSSGAVTAGIGHGVKEIADAIKEQAEEV---SFVYRS---QFTSEPAEKLAKKLSDLSPGD 90 (447)
T ss_pred eeeeEEEeCCCC---EEEECchhHHhccCCCCCHHHHHHHHHHHhhC---cCcccc---ccCCHHHHHHHHHHHHhCCCC
Confidence 445666666665 38997644 566889999999988753 111000 012344567788888887543
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcCc------------e
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSLA------------E 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G~------------~ 204 (609)
.+ .+.|+.|||.+ +...+++--. . ..++ -.++. ..|+.-...||... ..+...+- .
T Consensus 91 ~~-~v~f~~sGsEA-ve~AlklAr~-~---~~~r----g~t~r-~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~ 159 (447)
T PRK06917 91 LN-WSFFVNSGSEA-NETAMKIAIQ-H---FQER----GIQGK-HKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLED 159 (447)
T ss_pred CC-EEEEeCChHHH-HHHHHHHHHH-H---HHhc----CCCCC-CEEEEECCCcCCccHHHHHhcCCccccccCCCCCCC
Confidence 33 78999888886 3333332100 0 0000 01332 35666555566543 22222211 1
Q ss_pred EEEEecCCC-----CC-------CCHHHHHHHHhhhccCCCceEEEEecccCc-cccccC----HHHHHHHHHHhCCeEE
Q 038499 205 VVEIGLDDD-----GL-------LDIEALRSKLELYKDAKRPILGSFSACSNV-TGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 205 vv~v~~~~~-----g~-------ld~e~L~~al~~~~~~~~~~lv~~s~~sn~-TG~~~d----l~~I~~la~~~g~~vi 267 (609)
+..++.... +. -+++.+++.+++.. .+++..+++...... -|.+.| +++|.++|++||+++|
T Consensus 160 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~-~~~iAAvi~EPi~g~~gG~~~p~~~fl~~lr~lc~~~g~llI 238 (447)
T PRK06917 160 YPTISAPYCYRCPVQKVYPTCQLACATELETAIERIG-AEHIAAFIAEPIIGAAGAAVVPPKGYYKVIKEICDHYDILFI 238 (447)
T ss_pred CeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcC-CCceEEEEEeccccCcCceecCCHHHHHHHHHHHHHcCCEEE
Confidence 222221110 00 13456777776321 135678888876654 456655 6789999999999999
Q ss_pred EeccccCCcccccC---CCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 268 FDFAASGPYVEIDV---RSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 268 vD~A~~~~~~~id~---~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+|+++.+....-.+ .... -..|+++++ |.+||.. .+|.+++++++. +.+.+. .+.+.
T Consensus 239 ~DEv~tGfGRtG~~~a~~~~g-v~PDi~~~g--K~l~~G~~Pi~a~~~~~~i~--~~~~~~---~~~~~----------- 299 (447)
T PRK06917 239 ADEVMTGLGRTGAMFAMEHWG-VEPDIMTLG--KGLGAGYTPIAATVVSDRVM--EPILRG---SRSIM----------- 299 (447)
T ss_pred EechhhCcCcccchhhHHhcC-CCCCEEEee--ehhccCCcceEEEEEcHHHH--HHHhcc---Ccccc-----------
Confidence 99997632111111 1110 135887764 9998653 478899998873 332211 00000
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCce-EEeCCCCCCCcceEEEE
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNI-KILGNTSTKRQAILSFN 418 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i-~v~~~~~~~r~~~~~f~ 418 (609)
...-..|.|-..+...+.++.+ +. +.+.++.+++.+++.+.|++ .|.+ ++.+ ...++.+.
T Consensus 300 -----~~~T~~gnpl~~aaa~a~l~~l--~~---~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrG-----~Gl~~~ie 364 (447)
T PRK06917 300 -----SGHTLSANPLSAATALAVLEYM--EK---HNLPEKAAEKGEYLIKGLQKVQQQSTIIGDVRG-----KGLLIGVE 364 (447)
T ss_pred -----cccCCCCCHHHHHHHHHHHHHH--HH---CCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEee-----cceEEEEE
Confidence 0000123343334344444443 22 23445555566666655543 3322 1222 22333333
Q ss_pred eccCCCCCcCCCCCCCCCCCC----CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCC
Q 038499 419 IHSSTINSSLGENTKTETDKP----LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVK 494 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~----l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~ 494 (609)
+.. +.. .+... .....+...+.+ .||.+.+.... + .+..
T Consensus 365 ~~~-~~~---------~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~~~--~------------------------~g~~ 407 (447)
T PRK06917 365 FVA-DKK---------TKQPFSKSQAVASELISVAAK-NGLLLYPAVAG--Q------------------------DGKE 407 (447)
T ss_pred Eec-cCC---------cCCCCcchhHHHHHHHHHHHh-CCcEEEecccc--c------------------------CCCC
Confidence 322 100 00000 013456666655 59988742100 0 0001
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 495 PGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 495 ~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.+.+|++.++.+|++|++++++++.++++..
T Consensus 408 ~~~i~l~Ppl~it~~eid~~~~~l~~~l~~~ 438 (447)
T PRK06917 408 GDAVIIAPPMTITYSELDELLSIFAKSVEEM 438 (447)
T ss_pred CCEEEEECCCcCCHHHHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999988664
|
|
| >PRK07046 aminotransferase; Validated | Back alignment and domain information |
|---|
Probab=99.37 E-value=1e-09 Score=119.52 Aligned_cols=195 Identities=12% Similarity=0.045 Sum_probs=122.3
Q ss_pred eEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 78 LTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 78 ~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
-.|+|+.++ |-..+.|.+++.+++.... ... . .++...++.+.|.+.++. +.|.|+.|||.+
T Consensus 75 ~~yiD~~~g~g~~~lGh~~p~i~~Av~~q~~~~~---~~~--~----~~~~~~~lAe~l~~~~~~---~~v~F~nSGtEA 142 (453)
T PRK07046 75 HRYDDFCLGDTGAMFGHSPAPVARALAEQARRGL---TTM--L----PSEDAAWVGEELARRFGL---PYWQVATTATDA 142 (453)
T ss_pred CEEEEecccccccccCCCCHHHHHHHHHHHHhCC---CCC--C----CCHHHHHHHHHHHHHhCC---CEEEEECCHHHH
Confidence 358886533 4456899999998886421 111 1 134455677777777753 389999888887
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHH--c----------Cc------eEEEEecCC
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQ--S----------LA------EVVEIGLDD 212 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~--~----------G~------~vv~v~~~~ 212 (609)
....+-.+.. . .|.. .|+.-...||+... .+.. . |. .+..++.
T Consensus 143 ~e~AlrlAR~--------------~-TGr~-~ii~~~g~YHG~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-- 204 (453)
T PRK07046 143 NRFVLRWARA--------------V-TGRP-KILVFNGCYHGTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEF-- 204 (453)
T ss_pred HHHHHHHHHH--------------h-hCCC-EEEEECCCCCCCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCC--
Confidence 4443322221 1 2322 45554444555421 1110 0 10 1122222
Q ss_pred CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc----CCcccccCCCC
Q 038499 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS----GPYVEIDVRSG 284 (609)
Q Consensus 213 ~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~----~~~~~id~~~~ 284 (609)
-|++++++.+.. +++..|++.......|.+.| ++++.++|++||+++|+|+++. .+-.. ....
T Consensus 205 ---nd~~~l~~~l~~----~~vAavi~EPi~g~~G~~~p~~~fl~~lr~lc~~~g~llI~DEV~tfr~g~Gg~~-~~~g- 275 (453)
T PRK07046 205 ---NDLAALEAALAD----GDVAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDETHTISSGPGGYT-RAHG- 275 (453)
T ss_pred ---CCHHHHHHHhCC----CCeEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccCccCCcchh-HHhC-
Confidence 178999998853 46778889888888888876 6889999999999999999985 22110 0001
Q ss_pred CCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 285 QTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
-..|++++ .|.+||...+|++++++++
T Consensus 276 --v~PDi~t~--gK~lggG~Pi~av~g~~~i 302 (453)
T PRK07046 276 --LEPDFLVV--GKPIAGGVPCAVYGFSAEL 302 (453)
T ss_pred --CCccceee--hhhhcCCCcceeeeehHHH
Confidence 13588876 5999876668999999888
|
|
| >PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.5e-09 Score=116.71 Aligned_cols=360 Identities=16% Similarity=0.128 Sum_probs=188.6
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++.... ..++. ...+....++.+.+.+.+...
T Consensus 47 a~G~~l~D~dG~---~ylD~~~g~~~~~lGH~~p~v~~Ai~~q~~~~~-~~~~~-----~~~~~~~~~lAe~L~~~~p~~ 117 (459)
T PRK06931 47 AQGVWVTDVEGN---QYLDCLAGAGTLALGHNHPDVLQSIQDVLTSGL-PLHTL-----DLTTPLKDAFSEYLLSLLPGQ 117 (459)
T ss_pred ccccEEEeCCCC---EEEEcccchhhccCCCCCHHHHHHHHHHHhhhc-ccccc-----ccCCHHHHHHHHHHHHhCCCc
Confidence 445566666664 48998654 5667899999988875311 01110 012344566777777777532
Q ss_pred CC-CcE-EEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH-HcC------------
Q 038499 138 QE-DAM-IFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR-QSL------------ 202 (609)
Q Consensus 138 ~~-~~v-ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G------------ 202 (609)
.. ..+ +|+.|||.+ +...+++.- .. .| |..|+.-...||+....+. ..+
T Consensus 118 ~~~~~~~f~~~SGsEA-ve~AlklAr-------------~~-tg-r~~Ii~~~~~yHG~t~~als~t~~~~~~~~~~~~~ 181 (459)
T PRK06931 118 GKEYCLQFTGPSGADA-VEAAIKLAK-------------TY-TG-RSNVISFSGGYHGMTHGALAVTGNLSPKNAVNGLM 181 (459)
T ss_pred cccceEEEeCCCcHHH-HHHHHHHHH-------------Hh-cC-CCeEEEECCCcCCccHHHHhhcCCcccccCCCCCC
Confidence 21 134 454578775 333333211 01 22 2256666666665543322 111
Q ss_pred ceEEEEecCCCC--------CCCHHHHHHHHhhhc-----cCCCceEEEEecccCccccccC----HHHHHHHHHHhCCe
Q 038499 203 AEVVEIGLDDDG--------LLDIEALRSKLELYK-----DAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGF 265 (609)
Q Consensus 203 ~~vv~v~~~~~g--------~ld~e~L~~al~~~~-----~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~ 265 (609)
..+..++..... .-+.+++++.+.+.. ..+++..+++..+....|.+.| ++++.++|++||++
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~EPiqg~gG~~~~~~~yl~~lr~lc~~~g~L 261 (459)
T PRK06931 182 PGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGIL 261 (459)
T ss_pred CCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEccccCCCCCcCCCHHHHHHHHHHHHHcCCE
Confidence 123444432210 112343332222111 1134678888888888888765 78899999999999
Q ss_pred EEEeccccCCcccccC---CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccc
Q 038499 266 ACFDFAASGPYVEIDV---RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342 (609)
Q Consensus 266 vivD~A~~~~~~~id~---~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (609)
+|+|+++.+....-.+ .... -.+|+++++ |.+||...+|.++.++++ +.+.+...+ +|
T Consensus 262 lI~DEV~tGfGRtG~~~a~~~~g-v~PDivt~g--K~l~gG~Pi~av~~~~~~---~~~~~~~~~-~T------------ 322 (459)
T PRK06931 262 LIVDEVQAGFARTGKMFAFEHAG-IEPDIIVMS--KAVGGGLPLAVLGIKKEF---DAWQPGGHT-GT------------ 322 (459)
T ss_pred EEEecchhcCCcCchHHHhhhcC-CCCCEEEec--ccccCCcceeeeeeHHHH---hhccCCCCC-CC------------
Confidence 9999997642111111 1110 145888885 999876557887777654 222221111 11
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCce-EEeCCCCCCCcceEEE
Q 038499 343 LYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNI-KILGNTSTKRQAILSF 417 (609)
Q Consensus 343 ~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i-~v~~~~~~~r~~~~~f 417 (609)
..|.|--.....+.++.+ +. +.+.++.+++.+++.+.|++ .|.+ .+.+ ...++.+
T Consensus 323 ----------~~gnpla~aaala~L~~l--~~---~~l~~~~~~~G~~l~~~L~~l~~~~~~i~~vrG-----~Glm~gi 382 (459)
T PRK06931 323 ----------FRGNQLAMATGLTTLKIL--KE---ENLAQNAAERGEWLKAQLAELQKRYPCIGNVRG-----RGLMIGI 382 (459)
T ss_pred ----------CCCCHHHHHHHHHHHHHH--Hh---CCHHHHHHHHHHHHHHHHHHHHHhCCCeEeEec-----CceEEEE
Confidence 123443333334444443 22 23445555555555555543 3322 1222 2233444
Q ss_pred EeccCCCCCcCCCCCCCCCCCC-C---ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 418 NIHSSTINSSLGENTKTETDKP-L---HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~-l---~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
.+.. +.. ..+-.+.. . ....+.+.+.+ .||.+.+.. .
T Consensus 383 el~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~-~Gvl~~~~~-------~------------------------ 423 (459)
T PRK06931 383 EIVD-ERQ------PADAMGSYPADGELAAAIQKACFE-NGLLLERGG-------R------------------------ 423 (459)
T ss_pred EEcc-Ccc------cccccccCCccHHHHHHHHHHHHH-CCcEEeecC-------C------------------------
Confidence 4432 100 00000000 0 12345555655 588876321 0
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 494 KPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 494 ~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
.+..+|+.+++.+|++|++++++++++++....
T Consensus 424 ~~~~l~~~Ppl~it~~eid~~~~~l~~~l~~~~ 456 (459)
T PRK06931 424 NGNVVRLLPPLLITQAECEEFIDRFEQALLAAV 456 (459)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHHHHHHHHH
Confidence 136799999999999999999999999987643
|
|
| >TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-09 Score=117.81 Aligned_cols=213 Identities=12% Similarity=0.071 Sum_probs=121.3
Q ss_pred CHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcc-cc--cCCCCCC-CC
Q 038499 217 DIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYV-EI--DVRSGQT-DG 288 (609)
Q Consensus 217 d~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~-~i--d~~~~~~-~~ 288 (609)
++++|++++.++ .+++..|++..+....|.+.| +++|.++|++||+++|+|+++.+-.. .- -....+. ..
T Consensus 237 ~l~~l~~~l~~~--~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~ 314 (464)
T TIGR00699 237 CLEEVEDLIKKW--HKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDP 314 (464)
T ss_pred HHHHHHHHHHhc--CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCC
Confidence 456677777632 245778889999988999988 89999999999999999999753211 10 0011111 13
Q ss_pred ccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHH
Q 038499 289 YDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALA 368 (609)
Q Consensus 289 ~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~ 368 (609)
.|+++++ |.+|+. |+++.+ +. +....+...++ | ..|.|...+...+.+.
T Consensus 315 PDi~t~g--K~lg~g---G~~~~~-~~--~~~~~~~~~~~-T----------------------~~gnp~~~aaa~a~L~ 363 (464)
T TIGR00699 315 PDMVTFS--KKFQTA---GYFFHD-PA--FRPNKPYRQFN-T----------------------WMGDPSRALILREIIQ 363 (464)
T ss_pred CCEEEeh--hhhccC---Cccccc-hh--ccCCCCccccc-C----------------------CCCCHHHHHHHHHHHH
Confidence 6887775 998521 333332 22 11111111110 0 1233333343444555
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCc-eE-EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCCh
Q 038499 369 FWVKEYIGHEVIKKQEETYIERALERLLP----NQN-IK-ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHG 442 (609)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~-i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (609)
.. + .+.+.++..++.+++.+.|++ +|. +. +-+. .+..++.+.+.. . ...
T Consensus 364 ~l--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vRg~---G~Glm~gie~~~-~----------------~~~ 418 (464)
T TIGR00699 364 EI--K---RKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGK---GRGTFIAWDTPD-E----------------AKR 418 (464)
T ss_pred HH--H---hcCHHHHHHHHHHHHHHHHHHHHHhCCCceeeeccc---CeEEEEEEecCC-H----------------HHH
Confidence 43 2 223444554455555555543 441 21 1110 133444444422 1 124
Q ss_pred HHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 443 PFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 443 ~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
..+.+.+.+ .||.++.. ....+||.+++.+|++|++.++++|+++
T Consensus 419 ~~i~~~~~~-~Gvl~~~~---------------------------------g~~~ir~~Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 419 DKLLKKARN-NGVNIGGC---------------------------------GVKAIRLRPMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred HHHHHHHHH-CCcEEecC---------------------------------CCCeEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 567777766 49988621 1368999999999999999999999875
|
Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase. |
| >PRK06148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-09 Score=127.27 Aligned_cols=344 Identities=18% Similarity=0.175 Sum_probs=191.3
Q ss_pred eEEecCCC----CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 038499 78 LTYADHTA----SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 78 ~vyld~~a----~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal 153 (609)
.-|+|..+ .|-..+.|.+++.+++... ++++. + ..+...++.++|.+.+..+-+ .+.|+.|||.+.
T Consensus 624 ~~ylD~~~g~~~lGH~hp~v~~Ai~~q~~~l--~~~~~-~-----~~~~~~~lAe~L~~~~p~~~~-~v~f~nSGsEA~- 693 (1013)
T PRK06148 624 RAYLDCFNNVCHVGHAHPRVVAAAARQAARL--NTNTR-Y-----LHDAIVAYAERLTATLPDGLT-VAFFVNSGSEAN- 693 (1013)
T ss_pred CEEEEcccChhhcCCCCHHHHHHHHHHHhhc--CCcCC-c-----CCHHHHHHHHHHHHhCCCCcC-EEEEeCCcHHHH-
Confidence 35888753 3556789999999988754 33321 1 133456677777777754333 789998888863
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHc--------C----ceEEEEecCC--CCCC--
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQS--------L----AEVVEIGLDD--DGLL-- 216 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~--------G----~~vv~v~~~~--~g~l-- 216 (609)
...+++-- . -.|.+ .|++-...||+... ..... + ..+..++... .+..
T Consensus 694 e~AlklAr-------------~-~tGr~-~ii~~~~~YHG~t~~a~s~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 758 (1013)
T PRK06148 694 SLALRLAR-------------A-HTGQR-DAIVLDHAYHGTTTELIDLSPYKFNRKGGKGRPDHVEVAEVPDSYRGPERW 758 (1013)
T ss_pred HHHHHHHH-------------H-hcCCC-eEEEEcCCccCCCcchhhcCchhhcccCCCCCCCCceEcCCCCccccCCCC
Confidence 32222210 0 12322 45555555555432 11111 1 1122222110 0001
Q ss_pred -C-------HHHHHHHHhhh-ccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Ccccc---
Q 038499 217 -D-------IEALRSKLELY-KDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVEI--- 279 (609)
Q Consensus 217 -d-------~e~L~~al~~~-~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~i--- 279 (609)
+ .+++++.+... ...+++..+++..+....|.+.+ +++|.++|++||+++|+|+++.+ |-...
T Consensus 759 ~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~ 838 (1013)
T PRK06148 759 PDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWW 838 (1013)
T ss_pred ChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcch
Confidence 1 24455555421 11235778888888888898877 88999999999999999999753 32211
Q ss_pred cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhH
Q 038499 280 DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV 359 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i 359 (609)
-....+ -..|+++++ |.+||...+|.+++++++ .+.+.+....++ ...|.|--
T Consensus 839 a~e~~g-v~PDivt~g--K~lggG~Plgav~~~~ei--~~~~~~g~~~~~----------------------Tf~gnpla 891 (1013)
T PRK06148 839 AFETQG-VVPDIVTMG--KPIGNGHPMGAVVTTREI--ADSFDNGMEYFN----------------------TFGGNPVS 891 (1013)
T ss_pred hhhhcC-CCcceeeec--ccccCCcceEEEEEcHHH--HhhccCCCcccc----------------------CCCCCHHH
Confidence 111111 145888875 999877678999999988 333321100000 01233433
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCce-EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCC
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNI-KILGNTSTKRQAILSFNIHSSTINSSLGENTKT 434 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i-~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~ 434 (609)
.....+.++.+ + .+.+.++.+++.+++++.|++ .|-+ ++.+ ...++.+.+.. +..
T Consensus 892 ~aaa~a~L~~i--~---~e~l~~~~~~~G~~l~~~L~~l~~~~~~i~~VrG-----~Gl~~gvel~~-~~~--------- 951 (1013)
T PRK06148 892 CAIGLAVLDII--E---DEDLQRNALEIGNYLLAGLRELQDRFDIIGDVRG-----MGLFLGIELVT-DRK--------- 951 (1013)
T ss_pred HHHHHHHHHHH--h---hccHHHHHHHHHHHHHHHHHHHHHhCCCceEEee-----eceEEEEEecC-Ccc---------
Confidence 33334444443 2 234555666666666666654 3322 2222 12233333322 100
Q ss_pred CCCCC--CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHH
Q 038499 435 ETDKP--LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512 (609)
Q Consensus 435 ~~~~~--l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid 512 (609)
.... .....+...|.+ .||.+.+. ++ ....+|+.+++.+|++|++
T Consensus 952 -~~~~~~~~~~~i~~~~~~-~Gvl~~~~----g~---------------------------~~~vlr~~Ppl~it~~~id 998 (1013)
T PRK06148 952 -TKAPATAIARYVKNGARE-RGILIGTE----GP---------------------------HDNVLKIRPPLIFSRADAD 998 (1013)
T ss_pred -ccCccHHHHHHHHHHHHh-CCeEEecc----CC---------------------------CCCEEEEeCCccCCHHHHH
Confidence 0000 113456777766 59988631 11 1378999999999999999
Q ss_pred HHHHHHHHHHHhcc
Q 038499 513 FTLEALEFIAIYGQ 526 (609)
Q Consensus 513 ~ll~al~~v~~~~~ 526 (609)
++++++++++...+
T Consensus 999 ~~l~~l~~~l~~~~ 1012 (1013)
T PRK06148 999 HLLEVLDDVLAAAL 1012 (1013)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987654
|
|
| >TIGR03251 LAT_fam L-lysine 6-transaminase | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-09 Score=118.08 Aligned_cols=360 Identities=14% Similarity=0.052 Sum_probs=178.4
Q ss_pred CCCccccCC-CCCCceEEecCCCC------CCChHHHH--HHHHHhhcCCc-cCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 038499 64 GKNAEFDSP-FGKRRLTYADHTAS------GRSLRYIE--NYIINNVLPFY-GNTHTCDSYVGQHTTNMVHEASNYIKKC 133 (609)
Q Consensus 64 g~~~~~~~p-~g~~~~vyld~~a~------g~~~~~v~--~ai~~~~~~~~-~n~~~~~~~~~~~~~~~~~e~r~~ia~~ 133 (609)
+.+.++.+. .|++ |+|..++ |-..+.|. +++.+++.... ..+... .. ......++.++++++
T Consensus 26 a~G~~l~D~~dG~~---ylD~~~g~~~~~lGh~~p~v~~~~ai~~q~~~~~~~~~~~~-~~----~~~~~~~l~~~l~~~ 97 (431)
T TIGR03251 26 SRGSVLVDARDGRR---YLDMFSFFASMALGMNHPALVDDLAFRARLGAAAVNKPSNS-DV----YTVAMARFVDTFARV 97 (431)
T ss_pred ccCCEEEECCCCCC---hhhcccChhhcCCCCCChhhhHHHHHHHHHHHhhhcccccC-CC----CCHHHHHHHHHHHHh
Confidence 445666664 6643 8887654 55678888 88888776431 111110 11 123344555566666
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccch-HHHHHHcCce-EE----
Q 038499 134 LGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHSN-LLSWRQSLAE-VV---- 206 (609)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~-~~~~~~~G~~-vv---- 206 (609)
.+.+.-+.+.|+.|||.+ +...+++-- .... |. ....-++. ++..|+.-...||+. ..++...|.. ..
T Consensus 98 ~~~~~~~~v~f~~sGsEA-ve~AlklAr-~~t~--~~-~~~~g~~~~~~~~ii~~~~~yHG~t~~als~~~~~~~~~~~~ 172 (431)
T TIGR03251 98 LGDPALPHLFFIEGGALA-VENALKTAF-DWKS--RH-NQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTARF 172 (431)
T ss_pred cCCCCcCEEEEeCCcHHH-HHHHHHHHH-HHhh--cc-hhhcCCCCCCCceEEEECCccCCcchhhhhccCCccccccCC
Confidence 532222489999889886 222222210 0000 00 00000111 012455555555544 3333222211 00
Q ss_pred ------EE--e-----cCCCC--------CCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHH
Q 038499 207 ------EI--G-----LDDDG--------LLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQ 261 (609)
Q Consensus 207 ------~v--~-----~~~~g--------~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~ 261 (609)
.+ | .+... .-+++++++.+.. ..+++..++++.+....|.+.+ +++|.++|++
T Consensus 173 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~iAavivEPv~g~~G~~~~~~~~l~~l~~lc~~ 250 (431)
T TIGR03251 173 PKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAE--RPHDIACFIAEPIQGEGGDNHFRPEFLRAMRALCDE 250 (431)
T ss_pred CCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHh--CCCcEEEEEEeccccCCCCcCCCHHHHHHHHHHHHH
Confidence 01 1 00000 0124455566653 2257789999999988998854 7889999999
Q ss_pred hCCeEEEecccc-CCcccc--cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccc
Q 038499 262 YGGFACFDFAAS-GPYVEI--DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFN 338 (609)
Q Consensus 262 ~g~~vivD~A~~-~~~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~ 338 (609)
||+++|+|++++ ++.... ...... -.+|+++++ |.+ |. .|++. .+++..+ .... .++..
T Consensus 251 ~g~llI~DEV~tG~GrtG~~~a~~~~g-v~PDi~~~g--K~~--~~-~g~~~-~~~i~~~--~~~~-~~~~~-------- 312 (431)
T TIGR03251 251 HDALLIFDEVQTGVGLTGTAWAYQQLG-VQPDIVAFG--KKT--QV-CGIMA-GRRVDEV--ADNV-FAVPS-------- 312 (431)
T ss_pred cCCEEEEecchhccCccchHHHHHhcC-CCCCEEEec--ccC--cc-ceEEe-cchHHHh--hhhc-ccCcc--------
Confidence 999999999977 333210 001110 146998876 554 33 35554 4432100 0000 00000
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHhcCH-HHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEE
Q 038499 339 EKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGH-EVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSF 417 (609)
Q Consensus 339 ~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~-~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f 417 (609)
.......|+|.-.....++++.+ +..+. +.+.+....+.+.+.+...+.+++ .... ..+..++.+
T Consensus 313 ---------~~~~T~~gnpl~~aaa~a~L~~l--~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~--i~~v-rg~G~~~~i 378 (431)
T TIGR03251 313 ---------RLNSTWGGNLVDMVRATRILEII--EEERLVDNARVQGAHLLARLHELAAEFPHL--VSNP-RGRGLMCAF 378 (431)
T ss_pred ---------ccCCCCCCCHHHHHHHHHHHHHH--HhcCHHHHHHHHHHHHHHHHHHHHHhCccc--eecc-cccceeEEE
Confidence 00001134444444445555544 22232 344444444444444433334322 2221 112334444
Q ss_pred EeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 418 NIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
.+.. . -....+.+.|.+ .||.+.+. ....
T Consensus 379 ~~~~-~----------------~~~~~~~~~l~~-~Gvl~~~~---------------------------------g~~~ 407 (431)
T TIGR03251 379 DLPS-T----------------ADRDEVIRQLYR-EGVLLLGC---------------------------------GERS 407 (431)
T ss_pred EeCC-H----------------HHHHHHHHHHHh-CCeEEecC---------------------------------CCCe
Confidence 4432 1 123467777765 59988631 1256
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHH
Q 038499 498 TRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al~~v 521 (609)
+|+++++.+|++|+++++++|.++
T Consensus 408 lr~~P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 408 IRFRPPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred EEEECCccCCHHHHHHHHHHHHhC
Confidence 999999999999999999999763
|
Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. |
| >COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.6e-10 Score=119.24 Aligned_cols=195 Identities=18% Similarity=0.149 Sum_probs=128.0
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
...+.+++++...+..+ -+-.. +. .+....++.......+.+......+.++ +++++++.++...+.
T Consensus 38 ~~~~e~iea~~~~~~~~-v~Le~--~l---~~g~~~~R~~~~~~~~~~~~~aea~~iv-nnn~aAVll~~~al~------ 104 (395)
T COG1921 38 LYSPEAIEAMKEAMRAP-VELET--DL---KTGKRGARLTELAELLCGLTGAEAAAIV-NNNAAAVLLTLNALA------ 104 (395)
T ss_pred cCCHHHHHHHHHHhccc-ceeee--ec---ccchhhHHHHHHHHHHhcccchhheeeE-CCcHHHHHHHHhhhc------
Confidence 44566777776655432 22211 11 1112222333333334444322356666 556667777766653
Q ss_pred HHHHHHhhhcCCCceEEEECC-----CCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecc
Q 038499 168 LREKLIKCLRDEERWVVFVGP-----HEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSAC 242 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~-----~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~ 242 (609)
++. +|+++- ..|+.....++..|++++++... +.-...+++.+|. +++.++.-.+.
T Consensus 105 ----------~~~--EvVis~g~lV~gg~~~v~d~~~~aG~~l~EvG~t--n~t~~~d~~~AIn-----e~ta~llkV~s 165 (395)
T COG1921 105 ----------EGK--EVVVSRGELVEGGAFRVPDIIRLAGAKLVEVGTT--NRTHLKDYELAIN-----ENTALLLKVHS 165 (395)
T ss_pred ----------cCC--eEEEEccccccCCCCChhHHHHHcCCEEEEeccc--CcCCHHHHHHHhc-----cCCeeEEEEee
Confidence 233 233321 35667778899999999999744 4467899999999 57887666666
Q ss_pred cCccccc--cCHHHHHHHHHHhCCeEEEeccccCCcc-cccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhh
Q 038499 243 SNVTGIY--SDTRSIARLLHQYGGFACFDFAASGPYV-EIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALY 316 (609)
Q Consensus 243 sn~TG~~--~dl~~I~~la~~~g~~vivD~A~~~~~~-~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~ 316 (609)
+|. |.. .+.++++++||+||+++++|.+++.... ..+.++.-..|+|.|++|++|+||||. .|+++.+|+++
T Consensus 166 ~~~-~f~~~l~~~~l~~ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPq-aGii~GkKelI 240 (395)
T COG1921 166 SNY-GFTGMLSEEELVEIAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQ-AGIIVGKKELI 240 (395)
T ss_pred ccc-cccccccHHHHHHHHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCc-cceEechHHHH
Confidence 665 554 5678899999999999999999766422 233333333589999999999999999 59999999993
|
|
| >KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-09 Score=107.64 Aligned_cols=293 Identities=15% Similarity=0.091 Sum_probs=171.6
Q ss_pred HHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH
Q 038499 120 TNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS 197 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (609)
.-.++.+.+.|.+.=| ++++ +|.+| +|++.++..++.++. -.+.+ -|+++-+-|+-+-..
T Consensus 116 ~~vR~~VA~~I~rRDG~p~~p~-dI~LT-~GAS~ai~~il~l~~--------------~~~~~--GvliPiPQYPLYsAt 177 (475)
T KOG0258|consen 116 PGVRKHVAEFIERRDGIPADPE-DIFLT-TGASPAIRSILSLLI--------------AGKKT--GVLIPIPQYPLYSAT 177 (475)
T ss_pred hhHHHHHHHHHHhccCCCCCHH-Heeec-CCCcHHHHHHHHHHh--------------cCCCC--ceEeecCCCchhHHH
Confidence 3333444444444434 3344 78887 788889999888774 12333 699999999988888
Q ss_pred HHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccc
Q 038499 198 WRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAA 272 (609)
Q Consensus 198 ~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~ 272 (609)
....|+..+..-+++ ++.+|.++|++.+.+....-+++++++-+|-||||.+.. +++|..+|+++|+.++.|+.+
T Consensus 178 i~l~~~~~v~YyLdEe~~W~ld~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvls~e~ie~i~~fa~~~~l~llaDEVY 257 (475)
T KOG0258|consen 178 ISLLGGTQVPYYLDEESNWSLDVAELERSVDEARKGINPRALVVINPGNPTGQVLSEENIEGIICFAAEEGLVLLADEVY 257 (475)
T ss_pred HHHhCCcccceeeccccCCCCCHHHHHHHHHHHhccCCceEEEEECCCCccchhhcHHHHHHHHHHHHHcCeEEechHHH
Confidence 888898888777765 689999999999987665568898888899999999965 788999999999999999983
Q ss_pred c-----CCccc-------ccCCCCCCCCccEEE-EcCCCCCCC---CCCcEEEEEe---chh----hccC--CCCCCccC
Q 038499 273 S-----GPYVE-------IDVRSGQTDGYDAIF-LSTHKFLGG---PGSPGILLMT---KAL----YQLG--SFPPSTCG 327 (609)
Q Consensus 273 ~-----~~~~~-------id~~~~~~~~~D~v~-~S~hK~lgg---p~g~G~L~~~---~~~----~~l~--~~~p~~~g 327 (609)
- .+... ..|.+.....+-.++ .|.||.+.| +.| |++=+- ++. .++. ++-|...|
T Consensus 258 Q~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~RG-GYmEv~n~~prv~~qi~Kl~si~lc~~V~G 336 (475)
T KOG0258|consen 258 QDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQRG-GYMESLNRDPRVKQQIKKLASIKLCPQVSG 336 (475)
T ss_pred HhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecccC-CeeecccCChhHHHHHHHHHhhhhcCCccc
Confidence 2 11011 122221111222233 367787743 343 654332 111 1110 11111111
Q ss_pred CCceEe-ecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCC
Q 038499 328 GGTVNY-VNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGN 406 (609)
Q Consensus 328 gg~v~~-~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~ 406 (609)
---++- |++ -..|.+..-. +..+ .+.|.+..+..+..+.+.+.+++|+....+
T Consensus 337 Q~~vdl~VnP---------------P~Pgd~Sy~~--------~~~E---kd~il~~l~~ra~l~~~~~ns~~gi~cn~~ 390 (475)
T KOG0258|consen 337 QKLVDLVVNP---------------PKPGDPSYDL--------FSSE---KDGILSSLRSRAKLTEDAFNSLEGISCNPV 390 (475)
T ss_pred hhhhceecCC---------------CCCCCcchhh--------hhhh---hHhHHHHHHHHhHHHHHHHhhcCceeeccC
Confidence 111000 110 0112222222 1111 344556666677788889999999988765
Q ss_pred CCCCCcceEEEEeccCCCCCcCCCCCCCCCCC-CCChHHHHHHHhhhcCcEeccCcccCCh
Q 038499 407 TSTKRQAILSFNIHSSTINSSLGENTKTETDK-PLHGPFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 407 ~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~-~l~~~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
. ....+|-...=+.+ -....+.. .....+.+..|++.-||.+.+|+.|..+
T Consensus 391 q----GAMY~fP~i~lP~k-----aie~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~ 442 (475)
T KOG0258|consen 391 Q----GAMYLFPQISLPPK-----AIEAAKALGIAPDEFYCLKLLEATGICVVPGSGFGQK 442 (475)
T ss_pred c----cceeecccccCCHH-----HHHHHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCC
Confidence 3 34444432210000 00000001 1234577888889999999999987743
|
|
| >PRK08297 L-lysine aminotransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.5e-09 Score=112.61 Aligned_cols=358 Identities=13% Similarity=0.064 Sum_probs=183.0
Q ss_pred CCCccccCC-CCCCceEEecCCCC------CCChHHHHH--HHHHhhcCCcc-CCCCCCchhhHHHHHHHHHHHHHHHHH
Q 038499 64 GKNAEFDSP-FGKRRLTYADHTAS------GRSLRYIEN--YIINNVLPFYG-NTHTCDSYVGQHTTNMVHEASNYIKKC 133 (609)
Q Consensus 64 g~~~~~~~p-~g~~~~vyld~~a~------g~~~~~v~~--ai~~~~~~~~~-n~~~~~~~~~~~~~~~~~e~r~~ia~~ 133 (609)
+.+.++.+. .|++ |+|..++ |-..+.|.+ ++.+++..... .+... .. ..+...++.+.|+++
T Consensus 33 a~G~~l~D~~dG~~---ylD~~~g~~~~~lGh~~p~v~~~~ai~~ql~~l~~~~~~~~-~~----~~~~~~~la~~l~~~ 104 (443)
T PRK08297 33 SQGSYLVDARTGRR---YLDMFTFFASSALGMNHPALADDPEFRAELGRAALNKPSNS-DV----YTVEMARFVDTFARV 104 (443)
T ss_pred ccCCEEEECCCCCE---eeecccCHhhhcCCCCChHHhhHHHHHHHHHHhhhhccccC-Cc----CCHHHHHHHHHHHhh
Confidence 555666663 6653 9997654 667788988 99888865321 11110 11 123345566667777
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHh-cccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHcCce-------
Q 038499 134 LGGGQEDAMIFCGSGTTAAIKRLQEVM-GIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQSLAE------- 204 (609)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l-~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~G~~------- 204 (609)
.+.+.-+.|.|+.||+.+. ...+++- ... . +.+..+...+.++..|+.-...||+.. ..+...+..
T Consensus 105 ~~p~~~~~v~f~~SGsEAv-e~AlKlAr~~~--~--~~~~~~g~~~~~r~kii~~~~~yHG~t~~als~~~~~~~~~~~~ 179 (443)
T PRK08297 105 LGDPELPHLFFVDGGALAV-ENALKVAFDWK--S--RKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTARF 179 (443)
T ss_pred cCCCCCCEEEEeCchHHHH-HHHHHHHHHHh--h--ccccccCCCCCCCceEEEECCCcCCcchhhhhhcCCcccccccC
Confidence 6322224899998888863 2222221 000 0 000000000112335665555555443 333222210
Q ss_pred -E---EEEecCC-----CC-C---------CCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHH
Q 038499 205 -V---VEIGLDD-----DG-L---------LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQ 261 (609)
Q Consensus 205 -v---v~v~~~~-----~g-~---------ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~ 261 (609)
. ..++... .+ . -+++++++.+.+ +.+++..+++..+....|.+.| +++|.++|++
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~iAavI~EPi~g~~G~~~pp~~yl~~lr~lc~~ 257 (443)
T PRK08297 180 PKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFER--HPHDIACFIAEPIQGEGGDNHFRPEFFAAMRELCDE 257 (443)
T ss_pred CCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHh--CCCcEEEEEEccccCCCCCcCCCHHHHHHHHHHHHH
Confidence 0 0011000 00 0 124556666653 2256788889988888888744 7889999999
Q ss_pred hCCeEEEeccccC-Cccccc--CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccc
Q 038499 262 YGGFACFDFAASG-PYVEID--VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFN 338 (609)
Q Consensus 262 ~g~~vivD~A~~~-~~~~id--~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~ 338 (609)
||+++|+|+++.+ +...-- ..... -.+|+++++ |.++ +|.+++.+++..+ ......+.+.
T Consensus 258 ~g~llI~DEV~tGfGRtG~~~a~~~~g-v~PDiv~~g--K~l~----~~a~l~~~~i~~~--~~~~~~~~~~-------- 320 (443)
T PRK08297 258 HDALLIFDEVQTGVGLTGTAWAYQQLG-VRPDIVAFG--KKTQ----VCGIMAGRRVDEV--EDNVFAVSSR-------- 320 (443)
T ss_pred cCCEEEEechhhccCccchHHHHHhcC-CCCCEEEec--cccc----ccceecchHHHHh--hhhhccCccc--------
Confidence 9999999999753 332110 00010 146988864 8773 2333444443111 0000000000
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCce--EEeCCCCCCCc
Q 038499 339 EKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNI--KILGNTSTKRQ 412 (609)
Q Consensus 339 ~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i--~v~~~~~~~r~ 412 (609)
...-..|.|--.....+.++.+ + .+.+.++.+++.+++.+.|++ .|.+ .+-+ +.
T Consensus 321 ----------~~~T~~gnpl~~aaa~a~L~~l--~---~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg-----~G 380 (443)
T PRK08297 321 ----------INSTWGGNLVDMVRARRILEVI--E---EDGLVENAARQGEYLLARLEELAAEFPAVVSNVRG-----RG 380 (443)
T ss_pred ----------cCCCCCccHHHHHHHHHHHHHH--H---hcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeec-----cc
Confidence 0000012332222233334333 2 223445556666666665543 3422 3322 22
Q ss_pred ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCC
Q 038499 413 AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVG 492 (609)
Q Consensus 413 ~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~ 492 (609)
.++.+.+.. . .....+.+.|.+ .||.+.++
T Consensus 381 ~~~~i~~~~-~----------------~~~~~~~~~l~~-~Gvl~~~~-------------------------------- 410 (443)
T PRK08297 381 LMCAFDLPT-T----------------ADRDEVIRRLWE-EGVLVLPC-------------------------------- 410 (443)
T ss_pred eEEEEEecC-H----------------HHHHHHHHHHHH-CCEEEecC--------------------------------
Confidence 344444432 1 124567777765 59988631
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 493 VKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 493 ~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
....+|+++++.+|++|+++++++|++++..
T Consensus 411 -~~~~lr~~P~l~~t~~eid~~l~~l~~~l~~ 441 (443)
T PRK08297 411 -GERSIRFRPALTVTTEEIDAAIDALRRALPE 441 (443)
T ss_pred -CCCeEEEECCccCCHHHHHHHHHHHHHHHHh
Confidence 0256899999999999999999999998865
|
|
| >PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=8e-09 Score=112.17 Aligned_cols=212 Identities=16% Similarity=0.117 Sum_probs=117.3
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..++ |-..+.|.+++.+++..... .. + ......++.+.|.+.+...
T Consensus 37 ~~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~---~~-~-----~~~~~~~la~~l~~~~p~~ 104 (431)
T PRK06209 37 GSGAHVWDVDGN---EYIEYGMGLRAVGLGHAYPPVVEAVREALQDGCN---FT-R-----PSAIELDAAESFLELIDGA 104 (431)
T ss_pred ccCCEEEeCCCC---EEEEccccccchhcCCCCHHHHHHHHHHHHhCcC---CC-C-----CCHHHHHHHHHHHHhCCcc
Confidence 444555555554 38887643 55678999999998875321 10 1 1222335667777776422
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEEC-CCCccchHHHHHH------cCc------e
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVG-PHEHHSNLLSWRQ------SLA------E 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~~------~G~------~ 204 (609)
+.+.|+.|||.+. ...+++-- .. .|.+ .|+.. ...||+.. .|.. .+. .
T Consensus 105 --~~v~f~~sGseA~-e~AlklAr-------------~~-tgr~-~i~~~~~~~~h~~~-~~~~g~~~~~~~~~~~~~~~ 165 (431)
T PRK06209 105 --DMVKFCKNGSDAT-SAAVRLAR-------------AY-TGRD-LVARCADHPFFSTD-DWFIGTTPMSAGIPASVSAL 165 (431)
T ss_pred --ceEEEecCHHHHH-HHHHHHHH-------------HH-hCCC-eEEEeccCcccccc-ccccccCCCCCCCChhHhcc
Confidence 3799998888863 33322210 01 2322 44443 22222211 0100 011 0
Q ss_pred EEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccc-cCCC
Q 038499 205 VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEI-DVRS 283 (609)
Q Consensus 205 vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~i-d~~~ 283 (609)
+..++ .-|+++|++++++. .+++.+|++.......+....+++|.++|++||+++|+|+++.+-.... -...
T Consensus 166 ~~~~~-----~~d~~~l~~~l~~~--~~~~aavi~Epv~g~~~~~~~l~~l~~lc~~~g~lLI~DEv~tG~~~~~~g~~~ 238 (431)
T PRK06209 166 TVTFR-----YNDIASLEALFEDH--PGRIACVILEPATADEPQDGFLHEVRRLCHENGALFILDEMITGFRWHMRGAQK 238 (431)
T ss_pred ccccC-----CCCHHHHHHHHHhC--CCCEEEEEEccccCCCCCHHHHHHHHHHHHHcCCEEEEEcccccCCcCcchhhH
Confidence 11112 12789999998642 1345677776654432333348999999999999999999975321110 0111
Q ss_pred CCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 284 GQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
...-.+|++++ .|.+||...+|++++++++
T Consensus 239 ~~gv~PDi~t~--gK~lggG~p~~av~~~~~i 268 (431)
T PRK06209 239 LYGIVPDLSCF--GKALGNGFAVSALAGKREY 268 (431)
T ss_pred HhCCCcceeee--hhhhcCCcccEEEEEHHHH
Confidence 00013577655 5999875446888888887
|
|
| >COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.4e-09 Score=109.02 Aligned_cols=330 Identities=18% Similarity=0.223 Sum_probs=195.8
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHH-hCCCCC----CcE-EEeCChHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKC-LGGGQE----DAM-IFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~-~g~~~~----~~v-ift~sGttaa 152 (609)
+|-|-..-.|..+.|.++-...+.. ..+..|..-.+ ..+..+.++++ +|.+.. +.| .+...|.|+|
T Consensus 35 vY~de~Gk~pvl~aV~~Ae~~l~~~----~~~k~Yl~i~G----~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGA 106 (396)
T COG1448 35 VYKDEDGKTPVLRAVKKAEKRLLEQ----EKTKNYLPIEG----LPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGA 106 (396)
T ss_pred eeeCCCCCcchhHHHHHHHHHhhcc----ccccccCCcCC----cHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchH
Confidence 7889888888888887765433321 11111222222 23334444444 554311 122 2222566668
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec-CC-CCCCCHHHHHHHHhhhcc
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL-DD-DGLLDIEALRSKLELYKD 230 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~-~g~ld~e~L~~al~~~~~ 230 (609)
+...+..+.. ..+.. .|.++++.++.....+...|.+|...|. |. +..+|.+.+.+.|++..
T Consensus 107 L~~~A~fl~~-------------~~~~~--~vwis~PtW~NH~~If~~aGl~v~~Y~Yyd~~~~~~df~~mla~L~~a~- 170 (396)
T COG1448 107 LRVAADFLAR-------------FFPDA--TVWISDPTWPNHKAIFEAAGLEVETYPYYDAETKGLDFDGMLADLKTAP- 170 (396)
T ss_pred HHHHHHHHHH-------------hCCCc--eEEeCCCCcHhHHHHHHhcCCceeeeeccccccccccHHHHHHHHHhCC-
Confidence 8887776631 23434 5999999999999999999999998885 33 45699999999888531
Q ss_pred CCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCcccccCCCC-----CCCCc-cEEEEcCCCCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVEIDVRSG-----QTDGY-DAIFLSTHKFLG 301 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~~id~~~~-----~~~~~-D~v~~S~hK~lg 301 (609)
.+..++.=.-|+||||.-... ++|+++.++.|.+.++|.|+-+....++-... ...+. -+|+.|++|.||
T Consensus 171 -~~~vvLLH~CcHNPTG~D~t~~qW~~l~~~~~~r~lip~~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfg 249 (396)
T COG1448 171 -EGSVVLLHGCCHNPTGIDPTEEQWQELADLIKERGLIPFFDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFG 249 (396)
T ss_pred -CCCEEEEecCCCCCCCCCCCHHHHHHHHHHHHHcCCeeeeehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhh
Confidence 233344445678999998664 56899999999999999995432222321110 00122 477889999997
Q ss_pred CCCC--cEEEEE-echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh-----HHHHH---HHHHHHH
Q 038499 302 GPGS--PGILLM-TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ-----VIQMI---RAALAFW 370 (609)
Q Consensus 302 gp~g--~G~L~~-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~-----i~~~~---~aal~~~ 370 (609)
..| +|.+.+ .++.-...++ ...+... .|-...+|+ +++.+ ...-+.|
T Consensus 250 -LYgERVGa~~vva~~~~~a~~v--------------------~sqlk~~-iR~~ySnPP~~Ga~vva~IL~~p~Lra~W 307 (396)
T COG1448 250 -LYGERVGALSVVAEDAEEADRV--------------------LSQLKAI-IRTNYSNPPAHGAAVVATILNNPELRAEW 307 (396)
T ss_pred -hhhhccceeEEEeCCHHHHHHH--------------------HHHHHHH-HHhccCCCchhhHHHHHHHhCCHHHHHHH
Confidence 544 565443 2221001111 0001111 111122222 22221 1222334
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCC-C--ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHH
Q 038499 371 VKEYIGHEVIKKQEETYIERALERLLPN-Q--NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVAT 447 (609)
Q Consensus 371 ~~~~~g~~~i~~~~~~l~~~~~~~L~~~-p--~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 447 (609)
.++ .+.+++|+.++++.+.+.|++. + ++..+.. ..+.|++. + ++.++|.+
T Consensus 308 ~~E---l~~Mr~Ri~~mR~~lv~~L~~~~~~~~f~~i~~----Q~GMFsy~--G------------------ls~~QV~r 360 (396)
T COG1448 308 EQE---LEEMRQRILEMRQALVDALKALGAPRNFDFIIS----QRGMFSYT--G------------------LSPEQVDR 360 (396)
T ss_pred HHH---HHHHHHHHHHHHHHHHHHHHhhCCCcccchHhh----cCceeecC--C------------------CCHHHHHH
Confidence 333 5678899999999999999873 1 2444432 34566654 2 45666665
Q ss_pred HHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 448 LLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 448 ~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+ .+++||.+.. .| |+++.- .++..+++++++|..+
T Consensus 361 L-ree~~IY~v~-----------------------------------sG--Ri~vaG-l~~~ni~~va~ai~~v 395 (396)
T COG1448 361 L-REEFGIYLVA-----------------------------------SG--RINVAG-LNTSNIDYVAKAIAAV 395 (396)
T ss_pred H-HHhccEEEec-----------------------------------CC--eeeecc-CChhhHHHHHHHHHhh
Confidence 4 4779998762 24 888843 6889999999999876
|
|
| >KOG2790 consensus Phosphoserine aminotransferase [Coenzyme transport and metabolism; Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.1e-09 Score=104.46 Aligned_cols=341 Identities=16% Similarity=0.148 Sum_probs=217.5
Q ss_pred CChHHHHHHHHHhhcCCccCCC--CCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH-HHhcccc
Q 038499 88 RSLRYIENYIINNVLPFYGNTH--TCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ-EVMGIAV 164 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~--~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~-~~l~~~~ 164 (609)
.+|..|+..+++.+..+.+-.- .+.++.+......+.+++..++++++.+.+..|+|..+|.|.-+..+. ...+
T Consensus 17 klp~~VL~e~qkdl~n~~g~GisV~EmSHRsk~f~kii~~tes~lreLlniPdn~~vlf~QGGGt~qFaAv~lNL~g--- 93 (370)
T KOG2790|consen 17 KLPESVLLEAQKDLLNFNGSGISVMEMSHRSKDFAKIINDTESLLRELLNIPDNYKVLFLQGGGTGQFAAVPLNLIG--- 93 (370)
T ss_pred cCCHHHHHHHHHHhhccCCCcceEEEecccchhHHHHHHHHHHHHHHHHcCCCceeEEEEeCCCcccccccchhhhc---
Confidence 3678888888888887643221 123556777889999999999999999988788776555554232221 1111
Q ss_pred hhhHHHHHHhhhcCCC-ceEEEECCCCccchHHHHHHcCce-EEEEecCC-C-C-CCCHHHHHHHHhhhccCCCceEEEE
Q 038499 165 PSILREKLIKCLRDEE-RWVVFVGPHEHHSNLLSWRQSLAE-VVEIGLDD-D-G-LLDIEALRSKLELYKDAKRPILGSF 239 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~~~G~~-vv~v~~~~-~-g-~ld~e~L~~al~~~~~~~~~~lv~~ 239 (609)
++.|+ -..|+++...--+...+- ..|.. .+..+..+ . | ..|.+.++. + ++.+.+..
T Consensus 94 -----------lK~g~~AdYiVTGsWS~KA~~EAk-k~~~~~~V~~~~k~y~ygkvPd~~~w~~--~-----~da~yvyy 154 (370)
T KOG2790|consen 94 -----------LKHGRCADYVVTGSWSAKAAEEAK-KYGTPNIVIPKLKSYTYGKVPDPSTWEL--N-----PDASYVYY 154 (370)
T ss_pred -----------cccCCccceEEeccccHHHHHHHH-hhCCceEEeccccccccCcCCChhhccc--C-----CCccEEEE
Confidence 23331 126777765444433222 23432 33333322 1 2 334454432 2 45568888
Q ss_pred ecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccC
Q 038499 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLG 319 (609)
Q Consensus 240 s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~ 319 (609)
|...++-|+-.|.-. +-.-+|+.++.|-..-+-..++|+... ++++...+|.+| |.|.-++++++++ +.
T Consensus 155 CaNETVHGVEf~~~P---~~~~~~~vlVaDmSSnflSrpvDvsk~-----gvi~aGAQKN~G-~aG~Tvvivr~dl--lg 223 (370)
T KOG2790|consen 155 CANETVHGVEFDFIP---VNDPKGAVLVADMSSNFLSRPVDVSKF-----GVIFAGAQKNVG-PAGVTVVIVRKDL--LG 223 (370)
T ss_pred ecCceeeceecCCCC---CCCCCCceEEEecccchhcCCccchhc-----ceEEeccccccC-ccccEEEEEehhh--hc
Confidence 888888898644222 223468999999988887889998764 889999999998 8889999999999 55
Q ss_pred CCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 320 SFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 320 ~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
+..+.++. -.+|..-.....-..||+..++. ...+.+ +++..|...+.+...+-.+.+.+.+.+
T Consensus 224 ~~~~~tP~-------------v~dyk~~~~NnSlyNTpP~f~iy~~~Lv~~~-il~~GGl~a~e~~n~~KskllYd~iD~ 289 (370)
T KOG2790|consen 224 NALDITPS-------------VLDYKIMDKNNSLYNTPPCFGIYVMGLVFEW-ILEKGGLAAMEKLNQEKSKLLYDAIDN 289 (370)
T ss_pred ccccCCcc-------------ccceeeeccccccccCCCeeeeeehhhHHHH-HHhcccHHHHHHHHHHHHHHHHHHHHh
Confidence 44333221 01111111222234566665543 344444 446789999999999999999999988
Q ss_pred CCceEEeCC-CCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 398 NQNIKILGN-TSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 398 ~p~i~v~~~-~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
..++-.-.- ....+.-++.|.+.+ +. |..+++.+.. ++.=|++. ||+
T Consensus 290 s~gfy~cpVe~~~RS~MNV~Fri~~-d~---------------Le~eFLkeA~-~~~mv~LK---------GhR------ 337 (370)
T KOG2790|consen 290 SNGFYRCPVEPSVRSRMNVPFRIEK-DE---------------LEAEFLKEAA-KEHMVQLK---------GHR------ 337 (370)
T ss_pred cCCeEEcccchhhhhhcccceeecc-hH---------------HHHHHHHHHH-Hhhhhccc---------ccc------
Confidence 766644322 122345577888876 32 5666666666 44455554 333
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.-|.+|.|+....+-++++.+++.|++..+.
T Consensus 338 -----------------SVGGiRASlYNAisv~~~q~L~~~m~~F~k~ 368 (370)
T KOG2790|consen 338 -----------------SVGGIRASLYNAISVEEVQKLAAFMKEFQKK 368 (370)
T ss_pred -----------------ccccchhhhhccccHHHHHHHHHHHHHHHHh
Confidence 1388999998889999999999999987653
|
|
| >TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated | Back alignment and domain information |
|---|
Probab=99.18 E-value=1.1e-08 Score=107.82 Aligned_cols=334 Identities=14% Similarity=0.095 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhc-CCCceEEEECC-------CCccc-
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLR-DEERWVVFVGP-------HEHHS- 193 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~-~gd~~~Vlv~~-------~~h~s- 193 (609)
+.++++.+++++|.+ .+++|.+|..+ =+.+..++ ++ +|+ .+.+.. ..|.-
T Consensus 76 v~~Lee~vael~G~E---~alpthqGRga-E~Il~~~~---------------~~~~g~--e~g~~~~~~~v~hn~~fet 134 (467)
T TIGR02617 76 YYALAESVKNIFGYQ---YTIPTHQGRGA-EQIYIPVL---------------IKKREQ--EKGLDRSKMVAFSNYFFDT 134 (467)
T ss_pred HHHHHHHHHHHhCCc---eEEECCCCchH-HHHHHHhh---------------cccccc--cccccccccccceEEEEec
Confidence 557889999999996 56887777543 34444443 23 566 344333 22222
Q ss_pred hHHHHHHcCceEEEEec----------CCCCCCCHHHHHHHHhhhccCCCceEEEEecccC-ccccccC---HHHHHHHH
Q 038499 194 NLLSWRQSLAEVVEIGL----------DDDGLLDIEALRSKLELYKDAKRPILGSFSACSN-VTGIYSD---TRSIARLL 259 (609)
Q Consensus 194 ~~~~~~~~G~~vv~v~~----------~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn-~TG~~~d---l~~I~~la 259 (609)
........|+.++.++. ..+|.+|+++|+++|+.+.. ++.-.+..+..+| --|...+ ++++.++|
T Consensus 135 t~g~a~l~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~-~~i~~v~~tlt~N~~GGqpvslenlr~V~~la 213 (467)
T TIGR02617 135 TQGHSQINGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGP-NNVPYIVATITCNSAGGQPVSLANLKAVYEIA 213 (467)
T ss_pred chHHHHHcCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCC-CCceeeeeeEEEecCCCEEeCHHHHHHHHHHH
Confidence 22345567888777632 23689999999999985311 1222222222233 3577776 56789999
Q ss_pred HHhCCeEEEeccc----cC-------CcccccCCCCC---CCCccEEEEcCCCCCCCCCCcEEEEEech---h-hc-cCC
Q 038499 260 HQYGGFACFDFAA----SG-------PYVEIDVRSGQ---TDGYDAIFLSTHKFLGGPGSPGILLMTKA---L-YQ-LGS 320 (609)
Q Consensus 260 ~~~g~~vivD~A~----~~-------~~~~id~~~~~---~~~~D~v~~S~hK~lggp~g~G~L~~~~~---~-~~-l~~ 320 (609)
++||+.+|.|+|- +. ++...+++++. ...+|.+++|++|-+|.|-| |+|+++++ - +. .+.
T Consensus 214 ~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvG-g~Lag~d~~~~~l~~~~~~ 292 (467)
T TIGR02617 214 KKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCFKDDSFFDVYTECRT 292 (467)
T ss_pred HHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCccc-ceEEecchhHHHHHHHHHh
Confidence 9999999999972 21 23333333221 24789999999999999987 89999887 2 11 111
Q ss_pred CCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc
Q 038499 321 FPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN 400 (609)
Q Consensus 321 ~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~ 400 (609)
....+-| ....|..+ +--..+++.-+.+....+.+..|. .-.+|+.+.|.+. |
T Consensus 293 ~~i~~EG-----------------------f~tYGGla--grd~ea~a~Gl~e~~~~~yl~~ri-~qv~yl~~~L~~~-G 345 (467)
T TIGR02617 293 LCVVQEG-----------------------FPTYGGLE--GGAMERLAVGLYDGMNLDWLAYRI-NQVQYLVNGLEEI-G 345 (467)
T ss_pred hcccccC-----------------------CcCcCchh--HHHHHHHHhhhhhcccHHHHHHHH-HHHHHHHHHHHhC-C
Confidence 1111111 11112111 111122222233444444444444 4567888888765 6
Q ss_pred eEEeCCCCCCCcceEEEE----eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEec-cCcccCChhhhhhcCCC
Q 038499 401 IKILGNTSTKRQAILSFN----IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQAR-GGCACAGPYGHHLLDLD 475 (609)
Q Consensus 401 i~v~~~~~~~r~~~~~f~----~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~-~G~~ca~p~~~~ll~i~ 475 (609)
+.+.. . .++-.|. +.+ .. ...-.....++..|....||-.. -|+ .+++-+
T Consensus 346 vpi~~-~----Gghav~iDa~~~lp-hi-----------p~~~fpa~al~~~ly~~~GiR~~e~G~--------~~~~rd 400 (467)
T TIGR02617 346 VVCQQ-A----GGHAAFVDAGKLLP-HI-----------PADQFPAHALACELYKVAGIRAVEIGS--------LLLGRD 400 (467)
T ss_pred CcEEe-c----CccEEEEehhhhCC-CC-----------ChhhCcHHHHHHHHHHHcCcceEeecc--------eecccC
Confidence 65543 2 1233333 111 10 00113456777777777788532 122 122222
Q ss_pred hhHHHHHHHHHhhCCCCCC--CcEEEEecC-CCCCHHHHHHHHHHHHHHHHhcccccCCCcccccCCceee
Q 038499 476 EAQSYQIRSAIQKGYVGVK--PGWTRISFP-YYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTGTWCF 543 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~--~g~iRls~~-~~~t~eeid~ll~al~~v~~~~~~~~p~y~~~~~~~~w~~ 543 (609)
+...+ -.. -..+|+.++ ---|.+.+|++.++|..+.++....- -|.|-+..-.-||
T Consensus 401 ~~~~~-----------~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~~~~~i~-g~~~~~ep~~lrh 459 (467)
T TIGR02617 401 PKTGK-----------QLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKENAPNIK-GLTFTYEPKVLRH 459 (467)
T ss_pred CCCCc-----------cCCCccceeeeccccccccHhHHHHHHHHHHHHHhhhhhcC-CeEEEecCchhee
Confidence 11111 011 268999985 22388999999999999998765433 5555544433333
|
Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream. |
| >KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5e-09 Score=106.40 Aligned_cols=339 Identities=17% Similarity=0.208 Sum_probs=191.4
Q ss_pred eEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 78 LTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 78 ~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
.-|||..+. |-+.+.|.+++.+++.++|..+.. .++.-..++.+.+.+.+-.+-. .+.|+++|+.|
T Consensus 50 ~ryLD~f~Gi~tvslGHchP~v~~a~~kQl~~l~H~t~~-------~~~~pi~~~Ae~L~s~~P~~l~-~vfF~nsGsEA 121 (442)
T KOG1404|consen 50 RRYLDAFGGIVTVSLGHCHPDVVAAAVKQLKKLYHTTSG-------YLNPPIHDLAEALVSKLPGDLK-VVFFVNSGSEA 121 (442)
T ss_pred ceeehhhCCeEEEEcCCCChHHHHHHHHhhhhhEEeecc-------ccCCcHHHHHHHHHHhCCCCce-EEEEecCCchH
Confidence 348887754 567789999999999777643322 1234456677778888777665 78999889887
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HH--------HHHc------CceEEEEecCCCC--
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LS--------WRQS------LAEVVEIGLDDDG-- 214 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~--------~~~~------G~~vv~v~~~~~g-- 214 (609)
+=..+..+.-. .+.-| |+.-...||.+. .. |++. |..-...|....+
T Consensus 122 Nelal~mar~Y-------------t~~~d---iIa~r~~YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~ 185 (442)
T KOG1404|consen 122 NELALKMARLY-------------TGNLD---IIARRNSYHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIF 185 (442)
T ss_pred HHHHHHHHHHh-------------cCCce---EEEeeccccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccC
Confidence 43333332210 12223 555555555443 22 3321 1100001100011
Q ss_pred --C-------CCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccccC
Q 038499 215 --L-------LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDV 281 (609)
Q Consensus 215 --~-------ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~ 281 (609)
. --.++|++.+.... ...+..++...++..-|++.+ +++..++|+++|.++|.|+++++-..--.|
T Consensus 186 ~~~~~~e~~d~~a~~l~d~i~~~~-~~~vAafiaEtIqGvgG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~ 264 (442)
T KOG1404|consen 186 GGSNEEEASDRYAKELEDLILYDG-PETVAAFIAETIQGVGGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHM 264 (442)
T ss_pred CCCchhhhHHHHHHHHHHHHHhcC-CCceeEEEeehhccCCccccCCchHHHHHHHHHHHcCCEEEehhhhhcccccccc
Confidence 0 01133444443211 123446677888888899866 789999999999999999998753222244
Q ss_pred CCCCCCC--ccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc-CCChh
Q 038499 282 RSGQTDG--YDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES-GGTPQ 358 (609)
Q Consensus 282 ~~~~~~~--~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~-~gtp~ 358 (609)
-.++..+ .|++ +..|.+|....+|.+++.+++.. .+..... .... .|.|-
T Consensus 265 wgfe~h~v~PDIv--TmAKgiGnG~Pl~AVvtt~EIa~--v~~~~~~-----------------------~fnTyggnP~ 317 (442)
T KOG1404|consen 265 WGFESHGVVPDIV--TMAKGIGNGFPLGAVVTTPEIAD--VLNQKSS-----------------------HFNTYGGNPV 317 (442)
T ss_pred ccccccCCCccHH--HHHhhccCCCcceeeecCHHHHH--HHHhccc-----------------------cccccCCCch
Confidence 3332223 2544 45699987777899999998832 2211000 0011 23333
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcceEE-EEeccCCCCCcCCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAILS-FNIHSSTINSSLGENTKTET 436 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~~~-f~~~~~~~~~~~~~~~~~~~ 436 (609)
..+...+.+.. +-.+.++++..+...++.+.|.++. ...++++.. ..+.+. ..+.. .. ..
T Consensus 318 a~avg~aVL~V-----ikee~LqE~aa~vG~yl~~~l~~l~d~h~iIGdVR--G~GLm~GvE~V~-dk----------~~ 379 (442)
T KOG1404|consen 318 ACAVGLAVLKV-----IKEENLQENAAEVGSYLLEKLAALKDKHPIIGDVR--GRGLMLGVELVS-DK----------SE 379 (442)
T ss_pred hHHHHHHHHHH-----HHHHhHHHHHHHHHHHHHHHHHHHhhcCCceeecc--cceeEEEEEEec-cc----------CC
Confidence 33332333333 3357888888999999999887652 344555531 122222 22222 10 01
Q ss_pred CCC---CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHH
Q 038499 437 DKP---LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513 (609)
Q Consensus 437 ~~~---l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ 513 (609)
..+ -....+.+.+.+ .|+.+.-|. +....+||+.++..|++|+++
T Consensus 380 ~~pp~~~~~~~i~~~cke-~Gvlvg~g~-------------------------------i~G~vfriaPPlciT~edi~f 427 (442)
T KOG1404|consen 380 PKPPATAEGAVIGEQCKE-LGVLVGKGG-------------------------------IHGNVFRIAPPLCITKEDIDF 427 (442)
T ss_pred CCCcchHHHHHHHHHHHH-hCeeeeccc-------------------------------ccceEEEecCCeeccHHHHHH
Confidence 111 123456666655 588874331 123689999999999999988
Q ss_pred HHHHH
Q 038499 514 TLEAL 518 (609)
Q Consensus 514 ll~al 518 (609)
+++..
T Consensus 428 ~~~~~ 432 (442)
T KOG1404|consen 428 AVEYF 432 (442)
T ss_pred HHHHH
Confidence 88865
|
|
| >PRK12566 glycine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=8.6e-09 Score=117.88 Aligned_cols=305 Identities=15% Similarity=0.082 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
.+.+.-+..-+....++++.|.+-.+.-++- ++|++-..+..+.. .....+..|+|+...||..
T Consensus 118 isQG~Lqal~e~Qtmi~~LtGm~vaNASl~D--~atA~aEA~~ma~~--------------~~~~k~~~~~v~~~~hP~~ 181 (954)
T PRK12566 118 IAQGRLEALLNFQQMTIDLTGLDLANASLLD--EATAAAEAMALAKR--------------VAKSKSNRFFVDEHCHPQT 181 (954)
T ss_pred hhhHHHHHHHHHHHHHHHHhCchhhhhhhcc--chhHHHHHHHHHHH--------------HhhcCCCEEEECCCCCHHH
Confidence 3556677888899999999998744333443 44443332222221 1121233799999999987
Q ss_pred HHHHH----HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~~~----~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
....+ ..|++++. +++++.+. +++..+++.+| |..|.+.|+++|++++|++|++++ ++
T Consensus 182 ~~v~~t~~~~~g~~i~~-----------~~~~~~~~-----~~~~~v~vq~P-~~~G~i~d~~~i~~~~h~~gal~~-~~ 243 (954)
T PRK12566 182 LSVLRTRAEGFGFELVV-----------DAVDNLAA-----HAVFGALLQYP-DTHGEIRDLRPLIDQLHGQQALAC-VA 243 (954)
T ss_pred HHHHHHhhhcCCcEEEE-----------cchhhcCC-----CCEEEEEEECC-CCceEEccHHHHHHHHHHcCCEEE-EE
Confidence 76554 35777774 33444444 35666677766 577999999999999999999865 44
Q ss_pred cc--cCCcccccCCCCCCCCccEEEEcCC-----CCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 271 AA--SGPYVEIDVRSGQTDGYDAIFLSTH-----KFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 271 A~--~~~~~~id~~~~~~~~~D~v~~S~h-----K~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+. +.+.. ++-...|+|+++.+.+ =.+|||. .|++.+++++ .++++ -..-|-+++-..........
T Consensus 244 ~d~laL~ll----~~Pge~GADI~vG~~Q~fGvp~~~GGP~-ag~~a~~~~~--~R~~P-GRivG~s~D~~G~~a~~l~L 315 (954)
T PRK12566 244 ADLLSLLVL----TPPGELGADVVLGSTQRFGVPMGYGGPH-AAYFACRDDY--KRAMP-GRIIGVSRDARGNTALRMAL 315 (954)
T ss_pred eCHHHHhCC----CChhhcCCcEEeeCCCcCCCCCCCCCCC-eeeeeehHHH--HhhCC-CCccceeecCCCCeeeehhh
Confidence 31 11111 1111238999987655 3457776 6999999988 44553 33323222211100111122
Q ss_pred ccccccccccCCChhHHHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEE-E
Q 038499 344 YLEDIEERESGGTPQVIQM-----IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILS-F 417 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~-----~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~-f 417 (609)
+......|.+-.|.||... +.+++-.......|+..|.++...++.++.+.|.+ .|+++... ++|- |
T Consensus 316 qtREQHIRReKAtSNICT~qaL~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~-~g~~~~~~------~fF~~~ 388 (954)
T PRK12566 316 QTREQHIRREKANSNICTAQVLLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEA-KGIKRLNR------HFFDTL 388 (954)
T ss_pred hHHHHHhhhccccchhhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHh-cCCccccC------CccceE
Confidence 2222334555667776432 12222222224467888899999999999999988 68887643 3332 2
Q ss_pred EeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 418 NIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
.+.- + -....+.+...+ .||.+|-- ..+.
T Consensus 389 ~v~~-~----------------~~~~~~~~~a~~-~~~n~r~~---------------------------------~~~~ 417 (954)
T PRK12566 389 TLEV-G----------------GAQAAIIESAEA-ARINLRIL---------------------------------GRGR 417 (954)
T ss_pred EEEc-c----------------CCHHHHHHHHHH-CCCeeEEe---------------------------------CCCe
Confidence 2221 1 024556665544 58887711 1467
Q ss_pred EEEecCCCCCHHHHHHHHHHHH
Q 038499 498 TRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al~ 519 (609)
+.||+.-.+|.+|++.++.++.
T Consensus 418 ~~~s~de~~~~~~~~~~~~~f~ 439 (954)
T PRK12566 418 LGVSLDETCDEATVARLFDIFL 439 (954)
T ss_pred EEEEeCCCCCHHHHHHHHHHhc
Confidence 9999999999999999999884
|
|
| >PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.6e-09 Score=105.89 Aligned_cols=167 Identities=17% Similarity=0.147 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcEE---EeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-
Q 038499 122 MVHEASNYIKKCLGGGQEDAMI---FCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS- 197 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vi---ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~- 197 (609)
-++.+.+..|+.+|++.. ++ |+ |||.+ |...+..+ |+|||+ .+.++-..|-.....
T Consensus 55 GRd~le~iyA~vfgaE~A--LVRpq~v-SGTHA-i~~~Lfg~---------------LrpGD~-ll~~tG~PYDTL~~VI 114 (403)
T PF06838_consen 55 GRDKLERIYADVFGAEDA--LVRPQFV-SGTHA-IALALFGV---------------LRPGDE-LLSITGKPYDTLEEVI 114 (403)
T ss_dssp HHHHHHHHHHHHCT-SEE--EEETTS--SHHHH-HHHHHHHH-----------------TT-E-EEESSSS--CCHHHHH
T ss_pred cHHHHHHHHHHHhCchhh--hhccccc-chHHH-HHHHHHhc---------------CCCCCe-EEEcCCCchhhHHHHh
Confidence 466778888999999743 43 55 78774 55554443 689995 232333333333322
Q ss_pred ---------HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccC----ccccccCHHHHHHHHHHh--
Q 038499 198 ---------WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN----VTGIYSDTRSIARLLHQY-- 262 (609)
Q Consensus 198 ---------~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn----~TG~~~dl~~I~~la~~~-- 262 (609)
++..|++...|++.++|.+|.+.++++++ +++|++.+.-.-. ++=.+.+++++++++|+.
T Consensus 115 G~~g~~~GSL~e~Gi~Y~~v~L~~dg~~D~~~i~~~~~-----~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~p 189 (403)
T PF06838_consen 115 GIRGNGPGSLKEFGIKYREVPLTEDGTIDWEAIKKALK-----PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEINP 189 (403)
T ss_dssp TSSSSSSSSTGGGT-EEEE--B-TTSSB-HHHHHHHHH-----TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-T
T ss_pred CCCCCCCCChHHhCceeEEEeecCCCCcCHHHHHHhhc-----cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhCC
Confidence 34578999999999999999999999999 6899998753221 111224466677777765
Q ss_pred CCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCC--CCcEEEEEechhh
Q 038499 263 GGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGP--GSPGILLMTKALY 316 (609)
Q Consensus 263 g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp--~g~G~L~~~~~~~ 316 (609)
+++++||.+++-......-... |+|++..|.-|..||. .+-|+++.+++++
T Consensus 190 ~~iifVDNCYGEFvE~~EP~~v---GADl~aGSLIKNpGGgiAptGGYIaGr~~lV 242 (403)
T PF06838_consen 190 DVIIFVDNCYGEFVETQEPTEV---GADLMAGSLIKNPGGGIAPTGGYIAGRKDLV 242 (403)
T ss_dssp TSEEEEE-TTTTTTSSS-GGGG---T-SEEEEETTSGGGTTT-SS-EEEEESHHHH
T ss_pred CeEEEEeCCcceeccccCcccc---chhheeccceeCCCCCccCcCCEEechHHHH
Confidence 7999999998754333222222 8999999999999875 2359999999984
|
; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F. |
| >PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-11 Score=124.01 Aligned_cols=195 Identities=19% Similarity=0.173 Sum_probs=41.4
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
+.++.+.+++.+... -|.|..-. -..|..-. .+..+.+.++++.|+... +++ |+..+|+..++..+.
T Consensus 17 ~l~~~a~~a~~~~a~-~Y~nLE~d-l~~G~Rg~-R~~~v~~ll~~ltgAeaA---~Vv-NnnaAAv~L~l~~la------ 83 (367)
T PF03841_consen 17 PLSEEAIEAVAEVAS-GYSNLEYD-LETGKRGS-RYAHVEELLCELTGAEAA---LVV-NNNAAAVLLALNTLA------ 83 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccc-cccccccc-cccccccc-cccccccccccccccccc---ccc-ccccccccccccccc------
Confidence 445667777655443 23333211 11222222 245677888999999743 455 344456666655553
Q ss_pred HHHHHHhhhcCCCceEEEECCCCccchH------HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEec
Q 038499 168 LREKLIKCLRDEERWVVFVGPHEHHSNL------LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSA 241 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~------~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~ 241 (609)
+|. +|+++.-+-.-+- ..++..|+++++|.... ...+++++++|+ ++|.++.-.|
T Consensus 84 ----------~~~--EvIvsRGelVeiGgsFRip~vm~~sGa~lvEVGttN--~t~~~Dye~AI~-----e~Ta~ll~Vh 144 (367)
T PF03841_consen 84 ----------KGK--EVIVSRGELVEIGGSFRIPDVMRQSGARLVEVGTTN--RTHLSDYEKAIT-----ENTAALLKVH 144 (367)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ----------ccc--cccccccccccccccccccccccccccccccccccc--cccccccccccc-----cccccccccc
Confidence 343 5777665444332 23456899999998643 446889999999 6899888888
Q ss_pred ccCc--cccc--cCHHHHHHHHHHhCCeEEEecccc---------CCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEE
Q 038499 242 CSNV--TGIY--SDTRSIARLLHQYGGFACFDFAAS---------GPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGI 308 (609)
Q Consensus 242 ~sn~--TG~~--~dl~~I~~la~~~g~~vivD~A~~---------~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (609)
.||. .|.. .+++++++++|+||+++++|.+.+ .+. ..++...-..|+|+++||+.|.+|||. .|+
T Consensus 145 ~Sn~~i~GFt~~~~~~el~~la~~~~lp~i~DlgsG~l~dl~~~gl~~-Ep~v~~~~~~GaDlV~fSGdKlLGGPQ-aGi 222 (367)
T PF03841_consen 145 TSNFRIQGFTGEVSLEELAELAKEHGLPVIVDLGSGLLVDLSPYGLPD-EPTVQEYLAAGADLVTFSGDKLLGGPQ-AGI 222 (367)
T ss_dssp ----------------HHHHHHHHHT--EEEE-TTHHHHHHHTT-----------CCCCT-SEEEEETTSSSSS-S--EE
T ss_pred ccccccccccccccHHHHHHHHhhcCCcEEEECCCCCCcCcccccCcc-ccHHHHHhhcCCCEEEEECCCcCCCCC-eEE
Confidence 8886 3444 579999999999999999998862 222 223333334589999999999999999 599
Q ss_pred EEEechhh
Q 038499 309 LLMTKALY 316 (609)
Q Consensus 309 L~~~~~~~ 316 (609)
++.+++++
T Consensus 223 I~Gkk~lI 230 (367)
T PF03841_consen 223 IVGKKELI 230 (367)
T ss_dssp EEEEHHHH
T ss_pred EEeCHHHH
Confidence 99999993
|
3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A. |
| >PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.2e-08 Score=110.12 Aligned_cols=232 Identities=14% Similarity=0.046 Sum_probs=129.2
Q ss_pred HHHHHHHhhh---ccCCCceEEEEecc-cCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccccCCCCC--CCC
Q 038499 219 EALRSKLELY---KDAKRPILGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQ--TDG 288 (609)
Q Consensus 219 e~L~~al~~~---~~~~~~~lv~~s~~-sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~--~~~ 288 (609)
+.+++.|.+. ...+++..+++.-+ +...|++.+ +++|.++|++||+++|+|+++.+...--.+-..+ .-.
T Consensus 567 ~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DEV~TGfGRtG~~fa~e~~gv~ 646 (817)
T PLN02974 567 SYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELLGCK 646 (817)
T ss_pred HHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeecccCCCcccchhhHHhcCCC
Confidence 4566666531 11235667777764 677788866 6789999999999999999976432211111100 013
Q ss_pred ccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHH
Q 038499 289 YDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAAL 367 (609)
Q Consensus 289 ~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal 367 (609)
.|+++++ |.++|. ..+|.++++++++ +.+...... +. ++ ...-..|.|--.+...+.+
T Consensus 647 PDIi~~g--KgLtgG~~Plaa~l~~~~I~--~~f~~~~~~-~~-------------~~---hg~Ty~gnpl~cAaala~L 705 (817)
T PLN02974 647 PDIACYA--KLLTGGLVPLAATLATEEVF--EAFRGPSKL-DA-------------LL---HGHSYTAHPMGCAAAAKAL 705 (817)
T ss_pred CCEEeec--ccccCCCCccEEEEEcHHHH--Hhhcccccc-CC-------------cc---cCCCCCcCHHHHHHHHHHH
Confidence 5988887 999876 3689999999984 333110000 00 00 0000123344444445555
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHh----CCCCceE-EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCC--C
Q 038499 368 AFWVKEYIGHEVIKKQEETYIERALERL----LPNQNIK-ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP--L 440 (609)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~~~~~L----~~~p~i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~--l 440 (609)
++.. +..-.+.+.++..++.+++.+.| +++|.+. +.+ ..-++.+.+.. +. ....+ .
T Consensus 706 ~~~~-~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~p~V~~VRg-----~Gl~~~iel~~-~~----------~~~~~~~~ 768 (817)
T PLN02974 706 QWYK-DPSTNPNLIPPGSRLRELWDEELVRAISSLPNVERVVS-----LGTVLALELDA-EG----------SGSGYSSL 768 (817)
T ss_pred HHHH-cccHHHHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEEe-----eeeEEEEEEec-CC----------cccccchH
Confidence 5542 11122345555555555544444 4455432 222 22334444433 11 00011 0
Q ss_pred ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 441 HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 441 ~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
-...+.+.+...+||.+++. .+.+|+..++.++++|+++++++|.+
T Consensus 769 ~a~~v~~~~~~~~Gl~~r~~----------------------------------Gnvi~l~pP~~i~~e~l~~~~~~l~~ 814 (817)
T PLN02974 769 YARSVVRRLRREDGIYARPL----------------------------------GNVVYLMCGPTTSPETCTRLLRKVYR 814 (817)
T ss_pred HHHHHHHHHHHhCCEEEEec----------------------------------CCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 13456777762469998831 26789999999999999999999987
Q ss_pred HH
Q 038499 521 IA 522 (609)
Q Consensus 521 v~ 522 (609)
.+
T Consensus 815 ~~ 816 (817)
T PLN02974 815 RL 816 (817)
T ss_pred Hh
Confidence 54
|
|
| >KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.5e-08 Score=102.89 Aligned_cols=315 Identities=17% Similarity=0.157 Sum_probs=191.7
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH
Q 038499 118 HTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS 197 (609)
Q Consensus 118 ~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (609)
++.+..-.+++.|++++|++. .|++. .|-+ ++...+.++. +.|| +|++....+..+...
T Consensus 136 Gt~DvHldlE~~iakF~G~E~--aivYs-~gF~-ti~S~ipafs---------------KrGD--Ii~~de~~nfaIq~G 194 (467)
T KOG1358|consen 136 GTIDVHLDLEKRIAKFMGTED--AIVYS-YGFS-TIESAIPAFS---------------KRGD--IIFVDEAVNFAIQKG 194 (467)
T ss_pred ccceeecccHHHHHHhhCCcc--eeeec-cccc-hhhhcchhhh---------------ccCc--EEEEehhhhHHHHHH
Confidence 355666778999999999984 57775 5544 4555555554 6788 899988888888777
Q ss_pred HHHcCceEEEEecCCCCCCCHHHHHHHHhhhc----cCC---Cc-eEEEEecccCccccccCHHHHHHHHHHhCCeEEEe
Q 038499 198 WRQSLAEVVEIGLDDDGLLDIEALRSKLELYK----DAK---RP-ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (609)
Q Consensus 198 ~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~----~~~---~~-~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD 269 (609)
++.+.-.+++...+ |+++|++.+.+.. ..+ .| +.+++....-+||.+.|+.+|.++..||...+++|
T Consensus 195 lqlSRS~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~pl~~iv~lk~Kyk~Rvild 269 (467)
T KOG1358|consen 195 LQLSRSTISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICPLPEIVKLKNKYKFRVILD 269 (467)
T ss_pred HhhhhheeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccccHHHHHHHhhheEEEEEe
Confidence 77777788888765 7888877765321 111 22 37788889999999999999999999999999999
Q ss_pred ccccCCcccc---cCC---CCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 270 FAASGPYVEI---DVR---SGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 270 ~A~~~~~~~i---d~~---~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+..+.|...- .+. ......+|++++|..-.+++.+ |+...+.-....+++ .|.++
T Consensus 270 Es~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~alas~G--gFc~G~~~i~~hQrL----Sg~~Y------------- 330 (467)
T KOG1358|consen 270 ESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETALASGG--GFCAGKSFIADHQRL----SGSGY------------- 330 (467)
T ss_pred cccccccccccCccccccCCCCccceeeeeecccccccccC--ceeecceeeEeeeec----cccce-------------
Confidence 9977654321 000 0112467999999887776332 555553333111111 12222
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCC
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSST 423 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~ 423 (609)
-+.+..|+.+... +..+..+.+. ...+.+..+.....+.+.|+...++.+.+. +-+|++-....+ .
T Consensus 331 -------~fSAslPp~la~a-a~~ai~i~~~--~p~~~~~L~~k~~~~H~~l~~~s~~~v~~~---~~SPi~hl~l~~-~ 396 (467)
T KOG1358|consen 331 -------CFSASLPPYLAGA-AIKAILIEEW--NPEIVQPLRAKVAKFHAALSSNSGFIVSGS---PESPIIHLQLER-S 396 (467)
T ss_pred -------eeeccCchhhhhh-HHHHHHHHhh--CcchhhhhhccccccchhhhcCCceEEecC---cCCceeeeeecc-c
Confidence 1223455544321 1122222121 122555566666677788888878888876 456777666655 2
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC-CCcEEEEec
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV-KPGWTRISF 502 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~-~~g~iRls~ 502 (609)
..+. ..+..+ -+.++...... |+.+.. ...+.+ .+-. -+-.+||++
T Consensus 397 ~~s~-------e~e~~l-L~eivd~~i~~-~~ll~~--------a~~~~~----------------~e~~~~~pSiri~~ 443 (467)
T KOG1358|consen 397 YGSR-------EKEEKL-LEEIVDKCIAE-GVLLTR--------AKYLEK----------------LERCPIPPSIRICV 443 (467)
T ss_pred ccch-------HHHHHH-HHHHHHHHHhh-cceehh--------hhhhhh----------------cccCCCCCcEEEEE
Confidence 1000 000000 11222222222 444431 111111 1111 245799999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 038499 503 PYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 503 ~~~~t~eeid~ll~al~~v~~~ 524 (609)
...++++|++++.+.|++++..
T Consensus 444 ~a~~seeel~ra~~~ik~~~~~ 465 (467)
T KOG1358|consen 444 SAGMSEEELERAAELIKEVASA 465 (467)
T ss_pred eCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999998764
|
|
| >KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-07 Score=97.19 Aligned_cols=290 Identities=20% Similarity=0.168 Sum_probs=163.8
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|++....+|.|+. |+|++++ |...+.+.+++.+.+.++- |+ ..+.-+.+ .-++.+.+.+.++-.
T Consensus 45 gkg~kl~D~~g~E---yiD~~ssw~~~~~Ghanpev~ral~~q~~k~~---hs---~~~~~t~e-av~l~~~l~~~~~~~ 114 (433)
T KOG1401|consen 45 GKGSKLFDPDGKE---YIDFTSSWAVTILGHANPEVARALAEQAKKLG---HS---SNGYFTLE-AVELEEVLSAVLGKG 114 (433)
T ss_pred ceeeeeecCCcce---eeeeccceeccccCCCCHHHHHHHHHHHhhhe---ec---cCccccHH-HHHHHHHHHhcccCC
Confidence 3334444577654 8888766 5667889999988887641 21 11222223 556777777777655
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc-hHHHHHHcCceEEEEecC---CC
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS-NLLSWRQSLAEVVEIGLD---DD 213 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~~~~G~~vv~v~~~---~~ 213 (609)
..+.|.||.|||+|+..++-.++-...- =.+.++..|+.-...||. ...++...+..-...+.+ ++
T Consensus 115 ~~~rvff~nsGTeAne~ALK~Ark~~~~----------~~~~~~t~~Iaf~nsyHG~tlgals~~~~s~y~~~~~p~~p~ 184 (433)
T KOG1401|consen 115 SAERVFFCNSGTEANETALKFARKFTGK----------KHPEKKTKFIAFENSYHGRTLGALSVTGNSKYGLPFDPIAPD 184 (433)
T ss_pred CccEEEEecCCcHHHHHHHHHHHHhhcc----------cCCccceeEEEEecCcCCcchhHHHhhcccccCCCCCCCCCc
Confidence 4459999999999855554433310000 011222124544444444 333332222111111111 00
Q ss_pred ----CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-CcccccC-CC
Q 038499 214 ----GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVEIDV-RS 283 (609)
Q Consensus 214 ----g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~id~-~~ 283 (609)
.--|+.+|++.++.++ +.+..|++...+...|++.. +..|..+|+++|+++|.|+.+.+ +-...-. .+
T Consensus 185 v~~~~ynd~t~l~k~~~~h~--~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C~~~~vl~I~DEV~tG~gR~g~~~a~e 262 (433)
T KOG1401|consen 185 VVTAEYNDSTALEKLFESHK--GEIAAVIVEPIQGAGGIIPADPEFLIGLRKECDDNGVLLIFDEVQTGLGRLGYGWAQE 262 (433)
T ss_pred eeecccCCHHHHHHHHHhCC--CceEEEEEecccCCCCcccCCHHHHHHHHHHHhhcCceEEeehhhhCccccchHHHHH
Confidence 0127899999998642 45678899988888888744 56788999999999999999775 2111100 00
Q ss_pred CCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH
Q 038499 284 GQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI 363 (609)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~ 363 (609)
.-..-.|+.++. |.+||...+|+.++++++ .+.+.|-.+ .| ...-..|.|-.....
T Consensus 263 ~~~~~PDI~t~a--K~L~gGlPigA~~v~~kV--~~~i~~~~~----------------l~----hg~Tf~gnpLacsa~ 318 (433)
T KOG1401|consen 263 YFGVTPDITTVA--KPLGGGLPIGATGVRDKV--AEMISPGDH----------------LY----HGGTFSGNPLACSAG 318 (433)
T ss_pred HhCcCCcceeeh--hhccCCceeEEEeehHHH--HhhcCCCCc----------------cc----cCcccCCChhhhhHH
Confidence 000134776665 999887779999999998 444433211 00 000112333333322
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc
Q 038499 364 RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN 400 (609)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~ 400 (609)
..++..+ ++....+++....+.+++.+.+.+.+.++
T Consensus 319 ~~~l~~l-~~~e~~k~vs~~~k~L~~~l~e~~~~~~~ 354 (433)
T KOG1401|consen 319 IKVLDEL-KDPETLKNVSKIGKELRKLLDEYLKKTPN 354 (433)
T ss_pred HHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHhccCCC
Confidence 3333322 23334566777777788888888876544
|
|
| >PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen) | Back alignment and domain information |
|---|
Probab=99.02 E-value=2e-09 Score=111.35 Aligned_cols=175 Identities=17% Similarity=0.103 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
++...+..-+-+..|...-...+.+ ..+|. +.+.+..+.+ | .+|..+ .|+.+...|.+-..+...
T Consensus 56 ~ltn~l~~d~~~~~G~~~~~~~~~v-P~atg-m~l~l~l~~l------~------~r~~a~-~Viw~ridqkSc~kai~~ 120 (389)
T PF05889_consen 56 KLTNSLVLDALRLAGLRSVKSCFVV-PMATG-MSLTLCLLAL------R------MRPKAK-YVIWPRIDQKSCFKAIER 120 (389)
T ss_dssp HHHHHHHHHHHHHTTHTTHCEEEEE-SS-HH-HHHHHHHHHH------H------HHCT---EEEEEEEETHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccccceEEE-ecccc-cHHHHHHHHH------h------cccCCc-eEEEeeccccchHHHHHh
Confidence 3334444444556787744345555 45553 3333333321 1 123333 799999999999999999
Q ss_pred cCceEEEEecCC--C-CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC-HHHHHHHHHHhCCeEEEeccccCCc
Q 038499 201 SLAEVVEIGLDD--D-GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD-TRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 201 ~G~~vv~v~~~~--~-g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d-l~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.|.+++.|+... + -..|++++++++++.. ..+.+.++++.+-.-|...| +++|+++|++||+..++..|++.-.
T Consensus 121 AGl~~~vV~~~~~~d~l~td~~~ie~~i~~~G--~~~iLcvltttscfapr~~D~i~~IakiC~~~~IPhlvNnAYgvQ~ 198 (389)
T PF05889_consen 121 AGLEPVVVENVLEGDELITDLEAIEAKIEELG--ADNILCVLTTTSCFAPRLPDDIEEIAKICKEYDIPHLVNNAYGVQS 198 (389)
T ss_dssp TT-EEEEE-EEEETTEEEEHHHHHHHHHHHHC--GGGEEEEEEESSTTTTB----HHHHHHHHHHHT--EEEEGTTTTT-
T ss_pred cCCeEEEeeccCCCCeeeccHHHHHHHHHHhC--CCCeEEEEEecCccCCCCCccHHHHHHHHHHcCCceEEccchhhhH
Confidence 999999998532 2 2567889999987531 34578899999999999988 9999999999999999999998721
Q ss_pred ccccCCCC----CCCCccEEEEcCCCCCCCCCCcEEEEEec
Q 038499 277 VEIDVRSG----QTDGYDAIFLSTHKFLGGPGSPGILLMTK 313 (609)
Q Consensus 277 ~~id~~~~----~~~~~D~v~~S~hK~lggp~g~G~L~~~~ 313 (609)
..+ ++.+ ....+|+++-|.-|-|--|-|-+++....
T Consensus 199 ~~~-~~~i~~a~~~GRvda~vqS~dkNF~VPvGgai~As~~ 238 (389)
T PF05889_consen 199 SKC-MHLIQQAWRVGRVDAFVQSTDKNFMVPVGGAIMASFD 238 (389)
T ss_dssp HHH-HHHHHHHHHHSTCSEEEEEHHHHHCEESSHEEEEESS
T ss_pred HHH-HHHHHHHHhcCCcceeeeecCCCEEecCCCcEEEecC
Confidence 110 0000 00134666666666665565544444443
|
Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A. |
| >PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-07 Score=99.10 Aligned_cols=226 Identities=17% Similarity=0.139 Sum_probs=128.9
Q ss_pred CccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 038499 66 NAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE 139 (609)
Q Consensus 66 ~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~ 139 (609)
+.++.+..|+ .|+|..+. |-..+.|.+++.+.+... ...+.. ........++.+.|.+.++...
T Consensus 7 G~~l~d~dG~---~~lD~~~~~~~~~lGh~~p~i~~ai~~~~~~~-~~~~~~-----~~~~~~~~~la~~L~~~~p~~~- 76 (339)
T PF00202_consen 7 GAYLWDVDGR---EYLDFMSGYGSVNLGHNHPEIAEAIAEQANKL-NYVSFS-----GFTHPEAAELAEKLAELFPGGL- 76 (339)
T ss_dssp BTEEEETTSE---EEEESSHHHHTTTT-BT-HHHHHHHHHHHHHC-SSCSTT-----TSEEHHHHHHHHHHHHHSSTTE-
T ss_pred cCEEEECCCC---EEEECCCCccceecCCCccccchhHHHHhhhc-cccccc-----ceeccchhhhhhhhhhcccccc-
Confidence 3455555553 48998633 455788999998877543 111101 1123446677888888885433
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHc------------CceEE
Q 038499 140 DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQS------------LAEVV 206 (609)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~------------G~~vv 206 (609)
+.+.|+.||+++ +...+++.-. .-.....++.+ .|+.-...||+... ++... ...+.
T Consensus 77 ~~v~f~~sGseA-ve~Alkla~~--------~~~~~~~~~r~-~il~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~ 146 (339)
T PF00202_consen 77 DRVFFANSGSEA-VEAALKLARQ--------YHNKRAYTGRR-KILAFEGSYHGRTLGALSLTGNPPYRKGFGPLYPGVV 146 (339)
T ss_dssp EEEEEESSHHHH-HHHHHHHHHH--------HHHHTHHHTTT-EEEEETTTB-TSSHHHHHHSSSTHHHTTTCSSSTTEE
T ss_pred ceeeeccCchHH-HHHHHHHhhc--------ccccccccCCc-eEEEeeeeeeccCcccccccCCccccccccccccccc
Confidence 389999888886 3333332100 00000123333 56666666665332 22211 12456
Q ss_pred EEecCCCCC-----CCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCc-
Q 038499 207 EIGLDDDGL-----LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPY- 276 (609)
Q Consensus 207 ~v~~~~~g~-----ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~- 276 (609)
.+|.+.... -..+++++.+.+. ..+++..+++..+....|.+.+ +++|.++|++||+++|+|+++.+..
T Consensus 147 ~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~iaavivEPi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR 225 (339)
T PF00202_consen 147 FVPFPDPAADEEEQACLNALEELIAAL-NADEIAAVIVEPIQGEGGMIPPPPEYLRELRELCREHGILLIADEVQTGFGR 225 (339)
T ss_dssp EEETTCHHHHHHHHHHHHHHHHHHHHH-HGGGEEEEEEESSBTTTTSBEE-TTHHHHHHHHHHHTT-EEEEEETTTTTTT
T ss_pred cccCCccchhhhHHHHHHHHHHHHHhh-cCCcEEEEEEeccccccCccccccchhhehcccccccccceecccccccccc
Confidence 677653110 0111233333221 1246778889888888887754 6899999999999999999977532
Q ss_pred cc--ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 277 VE--IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 277 ~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
.. .-..... -.+|+++++ |.++|...+|.+++++++
T Consensus 226 tG~~~a~~~~g-v~PDiv~~g--K~l~gG~p~sav~~~~~i 263 (339)
T PF00202_consen 226 TGKFFASEHYG-VDPDIVTFG--KGLGGGLPISAVLGSEEI 263 (339)
T ss_dssp TSSSSGHHHHT-SSSSEEEEE--GGGGTTSSEEEEEEEHHH
T ss_pred cCCccceeccc-ccCcccccc--cchhhhhhcccccccchh
Confidence 11 1001010 145999997 999877778999999998
|
On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C .... |
| >COG3033 TnaA Tryptophanase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-05 Score=79.94 Aligned_cols=335 Identities=14% Similarity=0.083 Sum_probs=180.5
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHc
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQS 201 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~ 201 (609)
+..+++.+++.+|.+ .++-+..|-. |=+.+..++- . .+ ...||. +.++.+..|... ..-....
T Consensus 81 ~~~L~~avkdifGfq---~~iPthQGRg-AE~Il~~i~i-k----~~-----~~~pg~--~~~~~sN~~FdTTr~h~~~n 144 (471)
T COG3033 81 YYALADAVKDIFGFQ---YTIPTHQGRG-AENILIPILI-K----KG-----EQEPGS--KMVAFSNYHFDTTRGHIQIN 144 (471)
T ss_pred HHHHHHHHHHhcCce---eeeeccCCcc-HHHHHHHHHh-h----hc-----cccCCc--cccccccceecchhHHHHhc
Confidence 456778889999974 4555544322 2333333321 0 00 124554 334444444443 3344567
Q ss_pred CceEEEEecCC----------CCCCCHHHHHHHHhhhccCCCceEEEEecccCcccccc---CHHHHHHHHHHhCCeEEE
Q 038499 202 LAEVVEIGLDD----------DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYS---DTRSIARLLHQYGGFACF 268 (609)
Q Consensus 202 G~~vv~v~~~~----------~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~---dl~~I~~la~~~g~~viv 268 (609)
|+.++-++.++ .|.+|++.|++.|++-...+-|-+++...+|+.-|... .++++.++|++|++.++.
T Consensus 145 g~~~~n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~ 224 (471)
T COG3033 145 GATPRNVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVM 224 (471)
T ss_pred CCccccccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEe
Confidence 88776665432 36899999999998643333344554445555667654 478899999999999999
Q ss_pred eccccC-----------CcccccCCCCC---CCCccEEEEcCCCCCCCCCCcEEEEEechh----hc-cCCCCCCccCCC
Q 038499 269 DFAASG-----------PYVEIDVRSGQ---TDGYDAIFLSTHKFLGGPGSPGILLMTKAL----YQ-LGSFPPSTCGGG 329 (609)
Q Consensus 269 D~A~~~-----------~~~~id~~~~~---~~~~D~v~~S~hK~lggp~g~G~L~~~~~~----~~-l~~~~p~~~ggg 329 (609)
|.+-.+ +|....+.++. ...+|.++.|.-|=-..+-| |+|.++++. +. ...+.-+..|..
T Consensus 225 Da~RfaENaYFIk~rE~gYrd~sI~~IarEm~sYaD~~~mS~KKD~lvnmG-Gfl~~~D~~~fDvy~~~~~~~V~~eG~~ 303 (471)
T COG3033 225 DAARFAENAYFIKQREPGYRDWSIEEIAREMYSYADGCTMSAKKDGLVNMG-GFLCFKDDSFFDVYEECRTLVVVQEGFP 303 (471)
T ss_pred ehhhhhhhhhhhhhcCcccccccHHHHHHHHHhhhhhheeeccccceeccc-cEEEecCccHHHHHHHHHhheEeecccc
Confidence 987332 22222222110 13568889999887655565 999999873 21 111111111100
Q ss_pred ceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCC
Q 038499 330 TVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTST 409 (609)
Q Consensus 330 ~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~ 409 (609)
..|. +.+---.+++.-+.+....+.++.|. +-.+|+.+.|.+. |+.|+.|.
T Consensus 304 -----------------------tYGg--l~GrdmealAvGL~e~~~~~yl~~Rv-~Qv~YL~~~l~~~-GVpi~~pa-- 354 (471)
T COG3033 304 -----------------------TYGG--LAGRDMEALAVGLREGVNFDYLAHRV-AQVQYLADGLEEA-GVPIVQPA-- 354 (471)
T ss_pred -----------------------ccCc--ccchhHHHHHHHHHHhcCcHHHHHHH-HHHHHHHHHHHhc-CCeeEecC--
Confidence 0011 00000122222233444555555444 4467888899886 78777663
Q ss_pred CCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhC
Q 038499 410 KRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKG 489 (609)
Q Consensus 410 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~ 489 (609)
.++-.|.-.. ..-. +. ..+ ...++.++-.|....||.+..-..+ .++-++..-.+
T Consensus 355 --GGHavfvda~-~~lp----hi--p~e-qFpaqala~ely~e~GiRavElG~~-------~~~rd~ktg~q-------- 409 (471)
T COG3033 355 --GGHAVFVDAG-KFLP----HI--PAE-QFPAQALACELYKEAGIRAVELGSF-------SLGRDPKTGKQ-------- 409 (471)
T ss_pred --CCceEEeehh-hhcC----CC--Chh-hCcHHHHHHHHHHHhCeeeeeeece-------ecccCCCcccc--------
Confidence 2333333211 0000 00 001 1345667777777889976532111 12211100000
Q ss_pred CCCCCCcEEEEecC-CCCCHHHHHHHHHHHHHHHHhccccc
Q 038499 490 YVGVKPGWTRISFP-YYMSNEEFEFTLEALEFIAIYGQRFL 529 (609)
Q Consensus 490 ~~~~~~g~iRls~~-~~~t~eeid~ll~al~~v~~~~~~~~ 529 (609)
.-..-..+|+.++ -.-|.+.+|+++++++.+.+++...-
T Consensus 410 -~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e~~~~ik 449 (471)
T COG3033 410 -HPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKENAEDIK 449 (471)
T ss_pred -CCCchheeeEeccccccchhHHHHHHHHHHHHHhccccCC
Confidence 0001267999985 23378999999999999999886433
|
|
| >PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species | Back alignment and domain information |
|---|
Probab=98.40 E-value=1e-05 Score=82.10 Aligned_cols=159 Identities=14% Similarity=0.120 Sum_probs=80.1
Q ss_pred HHHHHHHHHHhC-CCCCC-cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 124 HEASNYIKKCLG-GGQED-AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 124 ~e~r~~ia~~~g-~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
++....|-+.+| +..++ .|+| |+|+|..+++++-+|.-.. -.++....|+...+.|+++...-...
T Consensus 49 ~~~Ir~LH~~VGNAvt~gr~IV~-GtGsTQL~~AalyALSp~~-----------~~~~~p~~VVa~aPYY~~Y~~qt~~f 116 (363)
T PF04864_consen 49 ERQIRRLHRVVGNAVTDGRYIVF-GTGSTQLFNAALYALSPNA-----------SPSSSPASVVAAAPYYSSYPEQTDFF 116 (363)
T ss_dssp HHHHHHHHHHH-SB--TTSEEEE-ECHHHHHHHHHHHHHCHHT------------TTSSSEEEEE-SS--CHHHHHCCCT
T ss_pred HHHHHHHHHHhccccccCcEEEE-cCCHHHHHHHHHHhcCCCC-----------CCCCCCceeEecCCCccchHHHHHhc
Confidence 334444555555 33333 5666 5999999999988885210 01222234666666666554332211
Q ss_pred -CceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc-ccc
Q 038499 202 -LAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY-VEI 279 (609)
Q Consensus 202 -G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~-~~i 279 (609)
.....+-.-..... .. ..+.+-|=+++.||||.|.+-. .+ ++.-+..+|.|-|+..|+ .+|
T Consensus 117 ~s~~y~w~Gda~~~~----------~~--~~~~~~IElVTSPNNPDG~lr~--~V---~~g~~~k~I~D~AYYWPhyTpI 179 (363)
T PF04864_consen 117 DSRLYKWAGDASNFK----------NS--DNPSPYIELVTSPNNPDGQLRE--AV---LNGSSGKVIHDLAYYWPHYTPI 179 (363)
T ss_dssp -BTTEEEEEECCCGT----------T---S-CCGEEEEEESS-TTT--------S---STTTEEEEEEE-TT-STTTS--
T ss_pred cccCccccccHHhhc----------cC--CCCCCeEEEEeCCCCCcccccc--hh---cCCCCcceeeeeeeeccccccc
Confidence 11222222111110 10 0134567789999999998732 22 344567789999998885 455
Q ss_pred cCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhh
Q 038499 280 DVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALY 316 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~ 316 (609)
.-.. +-|++.|+.+|.-| -.| +|+.+++++.+
T Consensus 180 ~~~a----D~DiMLFT~SK~TG-HAGSR~GWAlVKD~~V 213 (363)
T PF04864_consen 180 TAPA----DHDIMLFTLSKLTG-HAGSRFGWALVKDEEV 213 (363)
T ss_dssp -S-B------SEEEEEHHHHCS--GGG-EEEEEES-HHH
T ss_pred CCCC----CCceEEEEEecccC-ccccccceeeecCHHH
Confidence 4322 56999999999976 433 99999998773
|
Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B. |
| >KOG2142 consensus Molybdenum cofactor sulfurase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.36 E-value=5.2e-07 Score=96.97 Aligned_cols=385 Identities=16% Similarity=0.051 Sum_probs=220.9
Q ss_pred EecCCCCCCChHHHHHHHHHhhc-CCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVL-PFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQED-AMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~-~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~-~vift~sGttaal~~l~ 157 (609)
|+|++..+.....-++......+ ....|||+. ...+..+.+...+.|-.+..+++....| +++|+ . +++|+..++
T Consensus 23 yldhag~tl~sesq~~g~~~~sq~~e~~nphs~-~~ts~~l~~~v~Q~r~ril~~f~tta~dy~v~lp-~-~t~al~~va 99 (728)
T KOG2142|consen 23 YLDHAGRTLFSESQLEGVAFQSQSSENANPHSH-LGTSRSLARLVAQVRLRILALFNTTAFDYEVSLP-A-LTEALKLVA 99 (728)
T ss_pred HHHhhhhhhhhhcccchhhhhhhccccCCCccc-ccchHHHHHHHHHHHHHHHHHhccccccccchhH-H-HHHHHHHHH
Confidence 88888777665554444332222 234677774 4566677788888888888888865443 88998 5 899999999
Q ss_pred HHhcccchhhHHHHHHhhhcCCCc-eEEEECCCCccchHH-HH--HHcCceEEEE-ecCC---CCCCCHHHHHHHHhhhc
Q 038499 158 EVMGIAVPSILREKLIKCLRDEER-WVVFVGPHEHHSNLL-SW--RQSLAEVVEI-GLDD---DGLLDIEALRSKLELYK 229 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~-~~Vlv~~~~h~s~~~-~~--~~~G~~vv~v-~~~~---~g~ld~e~L~~al~~~~ 229 (609)
.++... ..+.+ ..+=...+.|-+... -. ...|..+..+ ..+. .....+.....-+
T Consensus 100 e~fp~~-------------s~tekid~lrs~~y~hls~s~~~~~~~~~~~gl~sy~q~~~i~~~~~~sls~~~~~l---- 162 (728)
T KOG2142|consen 100 EAFPFY-------------SQTEKIDNLRSDEYGHLSSSGHLMRLDYSGIGLFSYSQTNEISDSEEFSLSESEANL---- 162 (728)
T ss_pred HhCccc-------------cccccccchhhhhhcccccccceeeeeeeccceEEeeeeeeccccccccccccccCc----
Confidence 987521 22221 012222233333321 11 1233333333 2111 1111221111111
Q ss_pred cCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEE
Q 038499 230 DAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGIL 309 (609)
Q Consensus 230 ~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L 309 (609)
....+....+-.|..|..+....+-.+.-..+-++++|.|..+...+++.... ..|++.. +.|.||-|. |.|
T Consensus 163 --s~~~L~~g~a~~nfeg~kik~ri~d~L~ipe~~y~lldtaSrvSaf~Ldaesy---~f~~~~~-lltiFgyet--gAv 234 (728)
T KOG2142|consen 163 --SEHSLFGGAAQSNFEGDKIKLRIMDRLNIPESEYVLLDTASRVSAFPLDAESY---PFDFNPK-LLTIFGYET--GAV 234 (728)
T ss_pred --ccchhcccchhcccccceeeeeeecccccCCceEEEEEeecccccccchHhhC---CCcccch-heeecCCCc--hhh
Confidence 13447777778888887543333333332446789999998877788887765 5688888 999999777 444
Q ss_pred EEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh--cCHHHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY--IGHEVIKKQEETY 387 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~--~g~~~i~~~~~~l 387 (609)
.+..+.. .. .||++..+...|.. ...--.+...|++.|+......++.-..|-..+. .++..+..+...+
T Consensus 235 lv~~r~A---~~----~Ggkt~sa~f~wp~-~~l~s~~lkkr~e~gk~~~kd~a~gl~vFp~~sRvtG~~ysy~wmt~al 306 (728)
T KOG2142|consen 235 LVMNRSA---EL----KGGKTASAEFSWPM-LYLLSEKLKKRFEDGKLRFKDIAQGLFVFPTQSRVTGGMYSYSWMTLAL 306 (728)
T ss_pred HHHhhhh---Hh----hcCccceeecccch-HHHHHHHHHHHHhhccccccchhhheeccchHhhhcccchhHHHHHHHH
Confidence 4444431 11 17787766544321 1111235678888898766554433333333233 3567777777777
Q ss_pred HHHHHHHhCCC----CceEEeCCC---CCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccC
Q 038499 388 IERALERLLPN----QNIKILGNT---STKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGG 460 (609)
Q Consensus 388 ~~~~~~~L~~~----p~i~v~~~~---~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G 460 (609)
.+++.-.|.+. |.+++++-. ..-..++|.|++.. +. +.+.-.-+|.+.. .+||+.++|
T Consensus 307 ~~~whvlLda~~lG~kdmd~yglS~f~Pdfqg~sf~fv~g~-d~------------psgfGcl~VkKs~--i~~l~lrtG 371 (728)
T KOG2142|consen 307 ANNWHVLLDALALGPKDMDSYGLSLFQPDFQGPSFYFVFGR-DD------------PSGFGCLEVKKSA--ISGLELRTG 371 (728)
T ss_pred hhhHHHHHhhhccCcchHhhhhhhccCccceeeeEEEEecc-CC------------CCceeeeeeehhh--hhceeccCC
Confidence 77777776653 233333321 13456788888876 31 2223333444444 579999999
Q ss_pred cccCChhhhhhcCCChhHHHHHHHHHhh--CCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 461 CACAGPYGHHLLDLDEAQSYQIRSAIQK--GYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 461 ~~ca~p~~~~ll~i~~~~~~~~~~~~~~--~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
|+|+.......+|+..+.+...-++... .+.|-+ ++ ++..+.++++.++.++..-
T Consensus 372 cfcn~Gack~~pgl~~~~~~~~~~~g~~cgD~dg~~-----~s-~~~~~~~~~~a~~~~~v~~ 428 (728)
T KOG2142|consen 372 CFCNIGACKIYPGLYLEMSQKGLSAGKGCGDNDGQP-----VS-GYMQTPADVGAYLSAQVSD 428 (728)
T ss_pred CCCCCcceeecccccHHHHHHHhhhccccccCCCCc-----cc-ccccchhhhhHHHHHhhhh
Confidence 9999655566677776554433222111 123321 67 8888999999999887553
|
|
| >COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.32 E-value=8.3e-06 Score=80.43 Aligned_cols=168 Identities=17% Similarity=0.114 Sum_probs=115.0
Q ss_pred HHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH------
Q 038499 123 VHEASNYIKKCLGGGQED-AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL------ 195 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~------ 195 (609)
++-+.+..|+.+|++..- ..-|. |||.+ |...+-.+ |+|||...-+++. .|-...
T Consensus 67 RdtLe~vyA~vf~aE~a~VRpq~i-sGTHA-I~~aLfg~---------------LRpgDell~i~G~-PYDTLeevIG~r 128 (416)
T COG4100 67 RDTLERVYAQVFGAEAALVRPQII-SGTHA-IACALFGI---------------LRPGDELLYITGS-PYDTLEEVIGLR 128 (416)
T ss_pred hhHHHHHHHHHhccccceeeeeee-cchhH-HHHHHHhc---------------cCCCCeEEEecCC-cchhHHHHhccC
Confidence 445667779999987551 23466 78774 54443322 6899963333332 222221
Q ss_pred ----HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecc----cCccccccCHHHHHHHHHHh--CCe
Q 038499 196 ----LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSAC----SNVTGIYSDTRSIARLLHQY--GGF 265 (609)
Q Consensus 196 ----~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~----sn~TG~~~dl~~I~~la~~~--g~~ 265 (609)
.+++..|+....+++..+|.+|.+.+..+++ ++||++.+.-. .-|+=.+.+++++..+.|+. +++
T Consensus 129 g~~~gSL~dfgi~Y~~v~Lt~~gkiD~~~v~~~i~-----~~tkli~IQRS~GY~~RpS~~I~eI~~~i~~vk~inpn~i 203 (416)
T COG4100 129 GEGQGSLKDFGIKYKAVPLTADGKIDIQAVKTAIS-----DRTKLIGIQRSKGYAWRPSLSIAEIEEMITFVKEINPNVI 203 (416)
T ss_pred CCCcccHHHhCcceeecccccCCcccHHHHHHhcC-----ccceEEEEEeccCcCCCCcccHHHHHHHHHHHHhcCCCEE
Confidence 2345678889999999999999999999999 79999877432 12333345677777888875 799
Q ss_pred EEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCC--CCcEEEEEechhh
Q 038499 266 ACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGP--GSPGILLMTKALY 316 (609)
Q Consensus 266 vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp--~g~G~L~~~~~~~ 316 (609)
++||.+++-.......... |+|++..|.-|.-||. ..-|++..+.+++
T Consensus 204 vFVDNCYGEFvE~~EPt~v---GaDliAGSLIKNpGGgiaktGGYiaGk~~~v 253 (416)
T COG4100 204 VFVDNCYGEFVEEKEPTHV---GADLIAGSLIKNPGGGIAKTGGYIAGKAELV 253 (416)
T ss_pred EEEeccchhhhhccCcccc---chhhhccceeeCCCCceeeccceeechHHHH
Confidence 9999997754433333332 8899999999998875 2358999999884
|
|
| >KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0059 Score=61.08 Aligned_cols=252 Identities=17% Similarity=0.169 Sum_probs=147.3
Q ss_pred EEEECCCCccchHHHHHHcCc-eEEEEecC--CCCCCCHHHHHHHHhhhccCCCceEEEEecc-cCccccccC---HHHH
Q 038499 183 VVFVGPHEHHSNLLSWRQSLA-EVVEIGLD--DDGLLDIEALRSKLELYKDAKRPILGSFSAC-SNVTGIYSD---TRSI 255 (609)
Q Consensus 183 ~Vlv~~~~h~s~~~~~~~~G~-~vv~v~~~--~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~-sn~TG~~~d---l~~I 255 (609)
.|.++.+++......|...|. ++...+.= +.-.+|++-+...|+.. +.-.++.+.+| +||||+=.. ...|
T Consensus 127 ~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd~~~k~~d~e~~Lsdl~~A---Pe~si~iLhaCAhNPTGmDPT~EQW~qi 203 (410)
T KOG1412|consen 127 TVYVSNPTWENHHAIFEKAGFTTVATYPYWDAENKCVDLEGFLSDLESA---PEGSIIILHACAHNPTGMDPTREQWKQI 203 (410)
T ss_pred eeEecCCchhHHHHHHHHcCCceeeeeeeecCCCceecHHHHHHHHhhC---CCCcEEeeeccccCCCCCCCCHHHHHHH
Confidence 699999999999999999994 55555542 24468999988888742 33447777777 899998432 3458
Q ss_pred HHHHHHhCCeEEEeccc-cCCcccccCCCCC-----CCCc-cEEEEcCCCCCCCC-CCcEEEE--EechhhccCCCCCCc
Q 038499 256 ARLLHQYGGFACFDFAA-SGPYVEIDVRSGQ-----TDGY-DAIFLSTHKFLGGP-GSPGILL--MTKALYQLGSFPPST 325 (609)
Q Consensus 256 ~~la~~~g~~vivD~A~-~~~~~~id~~~~~-----~~~~-D~v~~S~hK~lggp-~g~G~L~--~~~~~~~l~~~~p~~ 325 (609)
+++.++.+.+.++|-|+ +...-..+-..+. ..+. =+++-|+.|.+|-- ..+|-|. +++... +..+..
T Consensus 204 a~vik~k~lf~fFDiAYQGfASGD~~~DawAiR~fV~~g~e~fv~QSFaKNfGlYneRvGnltvv~~n~a~-i~~v~S-- 280 (410)
T KOG1412|consen 204 ADVIKSKNLFPFFDIAYQGFASGDLDADAWAIRYFVEQGFELFVCQSFAKNFGLYNERVGNLTVVVNNPAV-IAGVKS-- 280 (410)
T ss_pred HHHHHhcCceeeeehhhcccccCCccccHHHHHHHHhcCCeEEEEhhhhhhcccccccccceEEEecChhH-HHHHHH--
Confidence 89999999999999884 3322233322221 1233 35666999998732 1255433 333321 111110
Q ss_pred cCCCceEeecccccccccccccccccccCCCh-hHHHHH-------HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 326 CGGGTVNYVNGFNEKDTLYLEDIEERESGGTP-QVIQMI-------RAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 326 ~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp-~i~~~~-------~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
.+.- ..|.....| +..+-+ -+--+.|.. .+..+..|+.+++..+++.|..
T Consensus 281 ------------------Ql~l-viR~~~SNPPAyGArIV~kvL~tP~lre~W~~---sik~MssRI~~MR~aLrd~L~a 338 (410)
T KOG1412|consen 281 ------------------QLTL-VIRSNWSNPPAYGARIVHKVLSTPELREQWIQ---SIKTMSSRIKKMRTALRDHLVA 338 (410)
T ss_pred ------------------HHHH-HHhhccCCCcchhhHHHHHHhcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHh
Confidence 0000 112222222 222211 122233432 3567888999999999999877
Q ss_pred C--Cce-EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC
Q 038499 398 N--QNI-KILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL 474 (609)
Q Consensus 398 ~--p~i-~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i 474 (609)
+ ||- .-+ ....+.|+|.- |.+..| +.|.+.+.|.+..
T Consensus 339 L~TPGtWDHI----~~QiGMFSyTG--------------------Ltp~qV-~~li~~h~vyLl~--------------- 378 (410)
T KOG1412|consen 339 LKTPGTWDHI----TQQIGMFSYTG--------------------LTPAQV-DHLIENHKVYLLS--------------- 378 (410)
T ss_pred cCCCCcHHHH----HhhccceeecC--------------------CCHHHH-HHHHHhceEEEec---------------
Confidence 5 221 000 13456666543 344455 4454666776541
Q ss_pred ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 475 DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.| |||+.- .+...+|++..+|.+.++..
T Consensus 379 --------------------~G--RInisG-LN~~NveyVAkAIde~Vr~~ 406 (410)
T KOG1412|consen 379 --------------------DG--RINISG-LNMKNVEYVAKAIDETVRAI 406 (410)
T ss_pred --------------------CC--cEeeec-cccccHHHHHHHHHHHHHhh
Confidence 24 677643 35577999999999887654
|
|
| >KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0028 Score=68.81 Aligned_cols=294 Identities=16% Similarity=0.121 Sum_probs=166.0
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH--
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ-- 200 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-- 200 (609)
.-.....|+++.|.+-.+.-++- -||.++=.+++. .. ..... .+++....|+.....++.
T Consensus 165 llNyQTmi~dlTGL~~aNASLLD-EgTAaaEAm~l~-~~--------------~~krk--k~vvd~~~hpqtlsV~~TRa 226 (1001)
T KOG2040|consen 165 LLNYQTMITDLTGLPMANASLLD-EGTAAAEAMALC-NR--------------INKRK--KFVVDSNCHPQTLSVVKTRA 226 (1001)
T ss_pred HhhhHHhhhhccCCcccchhhhc-cchhHHHHHHHH-Hh--------------hcccc--eEEecCCCCcchhhhhhccc
Confidence 34467788999998755444443 566553332222 21 12333 599999999998877653
Q ss_pred --cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc
Q 038499 201 --SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE 278 (609)
Q Consensus 201 --~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~ 278 (609)
.|++++.. |+++...-. ....-+.+..+ +.-|.+.|.+++++.+|+.|.++++-.- - -...
T Consensus 227 ~~~~i~v~~~--------~~~~~~~s~------~~v~gvlvQYP-~t~G~i~d~~el~~~a~~~~s~vv~atD-L-LaLt 289 (1001)
T KOG2040|consen 227 KGFGIKVVVS--------DIKEADYSS------KDVSGVLVQYP-DTEGSVLDFDELVELAHANGSLVVMATD-L-LALT 289 (1001)
T ss_pred cccceeEEec--------CHHHhhccc------cceeEEEEEcC-CCCCcccCHHHHHHHhhccCceEEEeeh-h-hHHH
Confidence 24443322 222221111 23445555555 4569999999999999999988664221 0 0011
Q ss_pred ccCCCCCCCCccEEEEcCCCC-----CCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccc-----cccc
Q 038499 279 IDVRSGQTDGYDAIFLSTHKF-----LGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY-----LEDI 348 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~-----lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~-----~~~~ 348 (609)
+ +++-...|+|+++.|.+.| +|||. .||+.+++++. +.++-...| -+.+- .....| ....
T Consensus 290 i-LrpPgefGaDIavGSsQRFGVPlGYGGPH-AaFfAv~~~l~--R~mPGRiiG-vtkD~-----~gk~a~RLALQTREQ 359 (1001)
T KOG2040|consen 290 I-LRPPGEFGADIAVGSSQRFGVPLGYGGPH-AAFFAVSESLV--RMMPGRIIG-VTKDA-----LGKEAYRLALQTREQ 359 (1001)
T ss_pred c-cCChhhcCceeeeccccccCccccCCCch-HHHHHHHHHHH--hhCCCceEe-eeecc-----cccHHHHHHHHHHHH
Confidence 1 1221123899999999987 35555 57888888772 333222122 11100 001111 1122
Q ss_pred cccccCCChhHHHH--HHHH--HHHH-HHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEE-eccC
Q 038499 349 EERESGGTPQVIQM--IRAA--LAFW-VKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFN-IHSS 422 (609)
Q Consensus 349 ~~r~~~gtp~i~~~--~~aa--l~~~-~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~-~~~~ 422 (609)
..|.+-.|.||... +.|- ..|. .....|.+.|.+|++.+.-.+...|+.. |-++... ++|--+ +.-
T Consensus 360 HIrRDKATSNICTAQALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~a-ghel~~k------~fFDTLkI~~- 431 (1001)
T KOG2040|consen 360 HIRRDKATSNICTAQALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNA-GHELQHK------PFFDTLKIRC- 431 (1001)
T ss_pred HhhhhccchhhhHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhc-chhhccc------cccceEEEEe-
Confidence 33445567776432 1111 1111 1234578899999999999999999865 4444432 233222 221
Q ss_pred CCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec
Q 038499 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF 502 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~ 502 (609)
+ -+.+++.....++ +|..|- . ..+.|-+|+
T Consensus 432 ~----------------~s~~~~l~rA~~~-~iNlr~------------~---------------------ed~tigvsl 461 (1001)
T KOG2040|consen 432 G----------------CSAEEVLDRAAKR-QINLRL------------V---------------------EDGTIGVSL 461 (1001)
T ss_pred c----------------CcHHHHHHHHHhh-cCceEE------------e---------------------ecCceEEee
Confidence 1 1456666666554 576661 1 258899999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 038499 503 PYYMSNEEFEFTLEALE 519 (609)
Q Consensus 503 ~~~~t~eeid~ll~al~ 519 (609)
--..+++|++.++..+.
T Consensus 462 DETv~~~DvddLl~vf~ 478 (1001)
T KOG2040|consen 462 DETVTEKDVDDLLWVFN 478 (1001)
T ss_pred cccccHHHHHHHHHHHc
Confidence 88899999999998774
|
|
| >KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.01 Score=59.08 Aligned_cols=338 Identities=15% Similarity=0.143 Sum_probs=177.4
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
|-+.+.|.++....+... ++.. -+ -..++.+-+++..+.+=+. +.++||.||+.++= +.++.-
T Consensus 60 ghchp~VV~A~~kQmat~--~tN~--RF---lhd~lv~cA~~l~stlPeL---svc~F~NSGSEAND-LALRLA------ 122 (452)
T KOG1403|consen 60 GHCHPEVVRAGAKQMATI--STNN--RF---LHDELVQCARTLTSTLPEL---SVCFFVNSGSEAND-LALRLA------ 122 (452)
T ss_pred ccCCHHHHHHHHHHHhHh--cccc--hh---hHHHHHHHHHHHhhcCCCc---eEEEEecCCchhhH-HHHHHH------
Confidence 567788888888777533 2221 11 1244455455555444443 37899989988732 222211
Q ss_pred hHHHHHHhhh-cCCCceEEEECCCCccchHHHHHH-------cCc---eEEE--E-ecCC--CC-------------CCC
Q 038499 167 ILREKLIKCL-RDEERWVVFVGPHEHHSNLLSWRQ-------SLA---EVVE--I-GLDD--DG-------------LLD 217 (609)
Q Consensus 167 ~~~~~~~~~l-~~gd~~~Vlv~~~~h~s~~~~~~~-------~G~---~vv~--v-~~~~--~g-------------~ld 217 (609)
+.+ +..| |++-+..||+...+.-+ .|. +..+ | |..+ .| ..-
T Consensus 123 -------R~ftkhqD---vItldHAYHGHl~s~mE~SPYKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Y 192 (452)
T KOG1403|consen 123 -------RNFTKHQD---VITLDHAYHGHLQSVMEVSPYKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALY 192 (452)
T ss_pred -------HhhcccCc---eEEEechhccceeeeeeccceeccCCCCcCCCceeEecCCccccccccccccCCcccchhhh
Confidence 112 2334 66666666665543221 121 2222 2 1111 11 122
Q ss_pred HHHHHHHHhhhccCC-CceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Cccc---ccCCCCCCCC
Q 038499 218 IEALRSKLELYKDAK-RPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVE---IDVRSGQTDG 288 (609)
Q Consensus 218 ~e~L~~al~~~~~~~-~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~---id~~~~~~~~ 288 (609)
.+.+++.+......+ .....+..+-++-.|.+.| .+++++..|.+|...|.|+.+-+ |-+. +.+.-. .--
T Consensus 193 ad~vk~I~~d~~~~g~gvAAfiAEslQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y-~fi 271 (452)
T KOG1403|consen 193 ADPVKEICQDQLAKGQGVAAFIAESLQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTY-NFI 271 (452)
T ss_pred hhHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhh-ccc
Confidence 234555544321112 2223344556677788887 56899999999999999999653 2221 111110 012
Q ss_pred ccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHH
Q 038499 289 YDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALA 368 (609)
Q Consensus 289 ~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~ 368 (609)
.|+++.. |-+|-....+.++..+++. +.+ ++.-+.|.|- ..|.|-..+...+.+.
T Consensus 272 PDIVtmg--KpmGNGhPVa~VattkeIA--~Af-----~atgv~YFNT----------------yGGnPVsCAv~laVm~ 326 (452)
T KOG1403|consen 272 PDIVTMG--KPMGNGHPVAAVATTKEIA--QAF-----HATGVEYFNT----------------YGGNPVSCAVGLAVMR 326 (452)
T ss_pred cchheec--ccCCCCCeeeEEeccHHHH--HHh-----ccccceehhc----------------cCCCchhHHHHHHHHH
Confidence 3666543 7776555578888888872 222 1212223221 1344443333233322
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcceEEEE-eccCCCCCcCCCCCCCCCCCC--CChHH
Q 038499 369 FWVKEYIGHEVIKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAILSFN-IHSSTINSSLGENTKTETDKP--LHGPF 444 (609)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~~~f~-~~~~~~~~~~~~~~~~~~~~~--l~~~~ 444 (609)
....+.+..+.+...+++...|.++. ..+++|.. ...+.|+-. +.. +. ..+.+ ..+..
T Consensus 327 -----v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh~~IGDv--RGvGLFiGIdLVk-D~----------~tRtP~tk~A~~ 388 (452)
T KOG1403|consen 327 -----VCEDENLQEHAQQVGEKLEVLLRRLKQKHECIGDV--RGVGLFIGIDLVK-DR----------KTRTPDTKEAHW 388 (452)
T ss_pred -----HHhhhhHHHHHHHHHHHHHHHHHHHhhhccceecc--ccceEEEeeeeec-cc----------ccCCCcHHHHHH
Confidence 33356677777777777777776542 33555552 223333322 111 10 01111 12456
Q ss_pred HHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 445 VATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 445 v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+...|.+.++|.+..- || ..+.+.|-.+..-+++++++++..+.+++.-
T Consensus 389 ~v~rlke~y~VLlsaD----GP---------------------------h~NilKiKPPmCFneena~e~v~~ld~iLT~ 437 (452)
T KOG1403|consen 389 VVNRLKELYRVLLSAD----GP---------------------------HRNILKIKPPMCFNEENADEFVLGLDEILTV 437 (452)
T ss_pred HHHHHHHhhhEEEecC----CC---------------------------CCceeecCCCcccChhhHHHHHHHHHHHHHH
Confidence 7778888888988732 12 1356777777777899999999999888764
Q ss_pred cc
Q 038499 525 GQ 526 (609)
Q Consensus 525 ~~ 526 (609)
..
T Consensus 438 me 439 (452)
T KOG1403|consen 438 ME 439 (452)
T ss_pred HH
Confidence 43
|
|
| >KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.015 Score=59.32 Aligned_cols=214 Identities=15% Similarity=0.151 Sum_probs=122.6
Q ss_pred CCHHHHHHHHhhhccCCCce-EEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCc--------ccccCC
Q 038499 216 LDIEALRSKLELYKDAKRPI-LGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPY--------VEIDVR 282 (609)
Q Consensus 216 ld~e~L~~al~~~~~~~~~~-lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~--------~~id~~ 282 (609)
-+++++++.|.++.....|. .+++...++.-|.-.- .+.+-+++++||+.++||++|.++. ...++.
T Consensus 253 ~Cl~~Ve~li~~~~~k~~pVaaiIvEPIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~ 332 (484)
T KOG1405|consen 253 GCLAEVEDLIVKYRKKKKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLD 332 (484)
T ss_pred hHHHHHHHHHHHHhhcCCCeEEEEeechhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCC
Confidence 36778888998765444454 6677777777776532 6789999999999999999987543 233333
Q ss_pred CCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH
Q 038499 283 SGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362 (609)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~ 362 (609)
. -+|+|+|| -|+.. .|+ +-+.++ .--.|+.. -....|-|.-.-+
T Consensus 333 ~----PpD~vTFS-KK~q~----gGf-fh~~~f---rpn~pYri-----------------------fNTWmGdP~k~ll 376 (484)
T KOG1405|consen 333 S----PPDVVTFS-KKFQT----GGF-FHDEEF---RPNEPYRI-----------------------FNTWMGDPSKNLL 376 (484)
T ss_pred C----Cccceehh-hhhhc----Ccc-ccCccc---CCCchHHH-----------------------hhhhcCChHHHHH
Confidence 2 46888887 24432 142 333333 11112210 0011344433332
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC
Q 038499 363 IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN----QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK 438 (609)
Q Consensus 363 ~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (609)
+...+ +.+-.+.+........+.+.++|.++ |+. +.+. ..|..++++.... +.
T Consensus 377 l~~vv-----~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~--~~~~-RGrGTF~a~d~ps-~~-------------- 433 (484)
T KOG1405|consen 377 LEEVV-----QEIKREDLLNNVAHVGKALLKGLLELQAKYPGK--INNL-RGRGTFIAWDCPS-GS-------------- 433 (484)
T ss_pred HHHHH-----HHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchh--hhcc-cccceEEEEeCCC-hH--------------
Confidence 23222 23334556666666667777766543 332 1111 1245555555544 21
Q ss_pred CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 439 PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 439 ~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
-.+.++..+ ...|+.+. || + ...||+-...--++...+-+++.+
T Consensus 434 --~Rdk~i~~~-~~nGv~~G-GC--g------------------------------~~siRfRPsLvf~~~Ha~i~l~~~ 477 (484)
T KOG1405|consen 434 --IRDKLILIA-RLNGVNLG-GC--G------------------------------DKSIRFRPSLVFRKHHADIFLDIF 477 (484)
T ss_pred --HHHHHHHHH-HHcCceec-cc--c------------------------------cceeeeccceeehhhhHHHHHHHH
Confidence 234455555 45687664 33 2 356788777667888899999999
Q ss_pred HHHHHh
Q 038499 519 EFIAIY 524 (609)
Q Consensus 519 ~~v~~~ 524 (609)
.+++..
T Consensus 478 ~k~l~~ 483 (484)
T KOG1405|consen 478 DKILAG 483 (484)
T ss_pred HHHhcc
Confidence 888754
|
|
| >KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.02 Score=58.27 Aligned_cols=124 Identities=19% Similarity=0.181 Sum_probs=80.8
Q ss_pred EEEECCCCccchHHHHHHcCceEEEEec-C-CCCCCCHHHHHHHHhhhccCCCceEEEEecccCcccccc---CHHHHHH
Q 038499 183 VVFVGPHEHHSNLLSWRQSLAEVVEIGL-D-DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYS---DTRSIAR 257 (609)
Q Consensus 183 ~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~-~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~---dl~~I~~ 257 (609)
.|+++.+++......+...|+.+..+.. + .+..+|.+.+.+.+.+.. +.-.+++=--++||||+=. ..++|.+
T Consensus 148 ~I~ip~PTWgNh~~if~~ag~~~~~yrYyd~~t~gld~~g~ledl~~~p--~gs~ilLhaCaHNPTGvDPt~eqw~ki~~ 225 (427)
T KOG1411|consen 148 DIYIPDPTWGNHKNIFKDAGLPVKFYRYYDPKTRGLDFKGMLEDLGEAP--EGSIILLHACAHNPTGVDPTKEQWEKISD 225 (427)
T ss_pred ceeecCCcccccCccccccCcceeeeeeccccccccchHHHHHHHhcCC--CCcEEEeehhhcCCCCCCccHHHHHHHHH
Confidence 6999999998877888889998877654 2 356788888777776421 1222333344679999842 2567899
Q ss_pred HHHHhCCeEEEeccccCC-cccccCCCC-----CCCCcc-EEEEcCCCCCCCCCC--cEEE
Q 038499 258 LLHQYGGFACFDFAASGP-YVEIDVRSG-----QTDGYD-AIFLSTHKFLGGPGS--PGIL 309 (609)
Q Consensus 258 la~~~g~~vivD~A~~~~-~~~id~~~~-----~~~~~D-~v~~S~hK~lggp~g--~G~L 309 (609)
+.++.+.+-++|-|+.+. .-.+|-.+. ...+.+ +++-|+.|.+| ..| .|.+
T Consensus 226 ~~~~k~~~pffDmAYQGfaSG~~d~DA~avR~F~~~g~~~~laQSyAKNMG-LYgERvGa~ 285 (427)
T KOG1411|consen 226 LIKEKNLLPFFDMAYQGFASGDLDKDAQAVRLFVEDGHEILLAQSYAKNMG-LYGERVGAL 285 (427)
T ss_pred HhhhccccchhhhhhcccccCCchhhHHHHHHHHHcCCceEeehhhhhhcc-hhhhcccee
Confidence 999999999999984432 222222211 012333 45669999987 433 5554
|
|
| >PLN02994 1-aminocyclopropane-1-carboxylate synthase | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.14 Score=47.34 Aligned_cols=55 Identities=15% Similarity=0.208 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhC----CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCcc
Q 038499 119 TTNMVHEASNYIKKCLG----GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHH 192 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g----~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~ 192 (609)
..++++.+.+.+.+..| .+++ +|++| +|++.++..++..+ +.+|| .|+++.+.|+
T Consensus 94 ~~~lR~AiA~~l~~~~g~~v~~~pd-~Ivvt-~Ga~~al~~l~~~l---------------~dpGD--~VlVp~P~Y~ 152 (153)
T PLN02994 94 LANFRKAIANFMAEARGGRVKFDAD-MIVLS-AGATAANEIIMFCI---------------ADPGD--AFLVPTPYYA 152 (153)
T ss_pred cHHHHHHHHHHHHHHhCCCCccchh-heEEc-CCHHHHHHHHHHHH---------------cCCCC--EEEEeCCCCC
Confidence 34556666666666656 3455 89998 89999999998887 48999 6888888775
|
|
| >KOG0630 consensus Predicted pyridoxal-dependent decarboxylase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.60 E-value=0.48 Score=50.52 Aligned_cols=133 Identities=16% Similarity=0.131 Sum_probs=86.3
Q ss_pred eEEEECCCCccchH-HHHHHcCceEEEEec--C-C----CCCCCHHHHHHHHhhhccCCCce-EEEEecccCccccccCH
Q 038499 182 WVVFVGPHEHHSNL-LSWRQSLAEVVEIGL--D-D----DGLLDIEALRSKLELYKDAKRPI-LGSFSACSNVTGIYSDT 252 (609)
Q Consensus 182 ~~Vlv~~~~h~s~~-~~~~~~G~~vv~v~~--~-~----~g~ld~e~L~~al~~~~~~~~~~-lv~~s~~sn~TG~~~dl 252 (609)
|++++++..|.-.. ..+++.|+..+.|.. + . .|++|...+++.|+++...+++- +++-.-..+.-|...-+
T Consensus 232 Pt~YiS~alh~~l~hYaarefGIa~~aI~~~~dhdqgeiegriDhh~feKiideDlaagkkPLilia~iGasi~GqnDmi 311 (838)
T KOG0630|consen 232 PTFYISEALHMDLLHYAAREFGIADEAIKPILDHDQGEIEGRIDHHLFEKIIDEDLAAGKKPLILIADIGASICGQNDMI 311 (838)
T ss_pred ceEEEcccccHHHHHHHHHHhCCchhheecccccccccccccccHHHHHHHHHHHHhCCCCCeEEEEeccchhhcchHHH
Confidence 58999998888654 457888875444422 2 2 35899999999999877666554 44445566677888889
Q ss_pred HHHHHHHHHhC-CeEEEeccccCC---cccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 253 RSIARLLHQYG-GFACFDFAASGP---YVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 253 ~~I~~la~~~g-~~vivD~A~~~~---~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
-+|.++|++|+ .|++.-+-.-+. ..+-+...-.....|.+....--|+|-|..+ ++...+.+
T Consensus 312 ~kildi~eahakfWLHasGhaiAALt~aepnnil~HV~eqldSMal~ialWLGiPSaP-iV~LHRPl 377 (838)
T KOG0630|consen 312 LKILDICEAHAKFWLHASGHAIAALTCAEPNNILGHVEEQLDSMALNIALWLGIPSAP-IVLLHRPL 377 (838)
T ss_pred HHHHHHHHHhhheeEeeccchhhheeecCcccchhHHHHHHhhccchhHHHhCCCCCc-eEEeeccc
Confidence 99999999996 888876532111 1111110000123588888888999988754 44444433
|
|
| >KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.2 Score=49.26 Aligned_cols=144 Identities=15% Similarity=0.044 Sum_probs=89.5
Q ss_pred cCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC---CCCCHHHHHHHHhhhccCCCceEEEEecc-cCcc-ccccC
Q 038499 177 RDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD---GLLDIEALRSKLELYKDAKRPILGSFSAC-SNVT-GIYSD 251 (609)
Q Consensus 177 ~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~---g~ld~e~L~~al~~~~~~~~~~lv~~s~~-sn~T-G~~~d 251 (609)
+|..+ .|+-......|-..+....|.+.+.|..--+ -.-|++++++.+.+. +.-.++++... +-.. -....
T Consensus 100 rpkak-yiiw~ridqks~~ksi~~agfepiiie~i~d~d~l~tdleav~~~iee~---g~dcilci~sttscfapr~pd~ 175 (432)
T KOG3843|consen 100 RPKAK-YIIWLRIDQKSCFKSIIHAGFEPIIIENILDGDELITDLEAVEAIIEEL---GEDCILCIHSTTSCFAPRSPDN 175 (432)
T ss_pred CCccc-EEEEEecchHHHHHHHHhcCCCceeeeccccchHHHHhHHHHHHHHHHh---CCceEEEEeecccccCCCCCch
Confidence 44444 6777777777877888889999887753222 245889999988863 22223333221 1111 11234
Q ss_pred HHHHHHHHHHhCCeEEEeccccCCcccccCCC----CCCCCccEEEEcCCCCCCCCCCcEEEEE-echhhccCCCCCCcc
Q 038499 252 TRSIARLLHQYGGFACFDFAASGPYVEIDVRS----GQTDGYDAIFLSTHKFLGGPGSPGILLM-TKALYQLGSFPPSTC 326 (609)
Q Consensus 252 l~~I~~la~~~g~~vivD~A~~~~~~~id~~~----~~~~~~D~v~~S~hK~lggp~g~G~L~~-~~~~~~l~~~~p~~~ 326 (609)
+++|+.+|..|++.-+|..|++.-...- ++. .....+|+++-|..|.|.-|-|..++.. ++.. +..+...++
T Consensus 176 leaiaaica~~diphivnnayglqsee~-i~~iaa~~~~grida~vqsldknf~vpvggaiia~fk~n~--iq~iak~yp 252 (432)
T KOG3843|consen 176 LEAIAAICAAHDIPHIVNNAYGLQSEEC-IHKIAAAAECGRIDAFVQSLDKNFMVPVGGAIIAAFKDNF--IQEIAKMYP 252 (432)
T ss_pred HHHHHHHHHccCchhhhccccccchHHH-HHHHHHHhhhccHHHHHHHhhhcceeecchhHhhHhHHHH--HHHHHHhCC
Confidence 8999999999999999999977643211 111 1123679999999999998876333332 3444 344444444
Q ss_pred C
Q 038499 327 G 327 (609)
Q Consensus 327 g 327 (609)
|
T Consensus 253 g 253 (432)
T KOG3843|consen 253 G 253 (432)
T ss_pred C
Confidence 4
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 609 | ||||
| 1jf9_A | 408 | Crystal Structure Of Selenocysteine Lyase Length = | 1e-08 | ||
| 1c0n_A | 406 | Csdb Protein, Nifs Homologue Length = 406 | 1e-08 | ||
| 1i29_A | 406 | Crystal Structure Of Csdb Complexed With L-Propargy | 1e-08 | ||
| 1kmj_A | 406 | E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE | 8e-08 | ||
| 1t3i_A | 420 | Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE De | 3e-06 |
| >pdb|1JF9|A Chain A, Crystal Structure Of Selenocysteine Lyase Length = 408 | Back alignment and structure |
|
| >pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue Length = 406 | Back alignment and structure |
|
| >pdb|1I29|A Chain A, Crystal Structure Of Csdb Complexed With L-Propargylglycine Length = 406 | Back alignment and structure |
|
| >pdb|1KMJ|A Chain A, E. Coli NifsCSDB PROTEIN AT 2.0A WITH THE CYSTEINE PERSULFIDE Intermediate (Residue Css). Length = 406 | Back alignment and structure |
|
| >pdb|1T3I|A Chain A, Structure Of Slr0077SUFS, THE ESSENTIAL CYSTEINE Desulfurase From Synechocystis Pcc 6803 Length = 420 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Length = 406 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-26
Identities = 87/339 (25%), Positives = 133/339 (39%), Gaps = 70/339 (20%)
Query: 190 EHHSNLLSWRQSLAE-----VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHH+N++ W Q L + I L+ DG L +E L + ++ L + + SN
Sbjct: 122 EHHANIVPW-QMLCARVGAELRVIPLNPDGTLQLETLPTLF-----DEKTRLLAITHVSN 175
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFL--STHKFLGG 302
V G + + L HQ+G D A + + +DV++ D F S HK G
Sbjct: 176 VLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQA-----LDCDFYVFSGHKLYGP 230
Query: 303 PGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362
G GIL + +AL L PP GG + V +E T + R GTP +
Sbjct: 231 TGI-GILYVKEAL--LQEMPPWEGGGSMIATV-SLSEGTT-W-TKAPWRFEAGTPNTGGI 284
Query: 363 I--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIH 420
I AAL +V +G I + E+ + AL +L ++ + G R +++FN+
Sbjct: 285 IGLGAALE-YVSA-LGLNNIAEYEQNLMHYALSQLESVPDLTLYG--PQNRLGVIAFNL- 339
Query: 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSY 480
H V + L D +GI R G CA P L+
Sbjct: 340 -----------------GKHHAYDVGSFL-DNYGIAVRTGHHCAMP----LMA------- 370
Query: 481 QIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519
Y V P R S Y ++EE + + L+
Sbjct: 371 ---------YYNV-PAMCRASLAMYNTHEEVDRLVTGLQ 399
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Length = 420 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 4e-26
Identities = 83/358 (23%), Positives = 129/358 (36%), Gaps = 75/358 (20%)
Query: 190 EHHSNLLSWRQSLAE-----VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHHSNL+ W Q +A + + LD+ D+E ++ L +++ L + SN
Sbjct: 127 EHHSNLVPW-QMVAAKTGAVLKFVQLDEQESFDLEHFKTLL-----SEKTKLVTVVHISN 180
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFL--STHKFLGG 302
G + IA+L HQ G D S P+ +DV+ D +L S HK
Sbjct: 181 TLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQL-----IDCDWLVASGHKMCAP 235
Query: 303 PGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362
G G L + + L + PP GG + V ++ + GTP + +
Sbjct: 236 TGI-GFLYGKEEI--LEAMPPFFGGGEMIAEV---FFDHFTT-GELPHKFEAGTPAIAEA 288
Query: 363 I--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNT--STKRQAILSFN 418
I AA+ + +G E I E + L +++ G R A+ SFN
Sbjct: 289 IALGAAVDYL--TDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFN 346
Query: 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQ 478
+ LH VAT++ D GI R G C P
Sbjct: 347 V------------------AGLHASDVATMV-DQDGIAIRSGHHCTQPLHRLF------- 380
Query: 479 SYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNI 536
G R S +Y + EE + L++L+ RF +F +
Sbjct: 381 -------------DA-SGSARASLYFYNTKEEIDLFLQSLQAT----IRFFSDDDFTV 420
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} Length = 406 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 53/356 (14%), Positives = 104/356 (29%), Gaps = 94/356 (26%)
Query: 190 EHHSNLLSWRQSLAE-----VVEIGLD-DDGLLDIEALRSKLELYKDAKRPILGSFSACS 243
+ +N+ W A V +D + G L S + K L + ++ S
Sbjct: 122 DDEANIAPW-LRAAHRYGAKVKWAEVDIETGELPTWQWESLIS-----KSTRLVAVNSAS 175
Query: 244 NVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFL--STHKFLG 301
G +D R++ +L+H G D +A+ PY +D+R DA + + H + G
Sbjct: 176 GTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRE-----TDADVVTVNAHAWGG 230
Query: 302 GPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ 361
P ++ ++ + SF Y R G Q
Sbjct: 231 PPIG-AMVFRDPSV--MNSFGS-------------V--STNPY-ATGPARLEIGVHQFGL 271
Query: 362 MI--RAALAF------------WVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNT 407
+ A++ + + + + + + L + ++G
Sbjct: 272 LAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIG-R 330
Query: 408 STKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA-RGGCACAGP 466
+ ++SF +H + V L GI A +
Sbjct: 331 PEAQIPVVSFAVHK------------------VPADRVVQRL-ADNGILAIANTGSRVLD 371
Query: 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522
+L G V G + +Y + E + + AL +
Sbjct: 372 ----VL----------------GVNDV-GGAVTVGLAHYSTMAEVDQLVRALASLG 406
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Length = 390 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 1e-20
Identities = 58/349 (16%), Positives = 90/349 (25%), Gaps = 85/349 (24%)
Query: 190 EHHSNLLSWRQSLAE-------VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSAC 242
EH + Q++A + + L + L + L S
Sbjct: 110 EHPGIIAIV-QAIAARFGITYRFFPVAATLNQGDAAAVLANHLG-----PKTRLVILSHL 163
Query: 243 SNVTGIYSDTRSIARLLHQYGGFAC----FDFAASGPYVEIDVRSGQTDGYDAIFL--ST 296
TG I + ++ G D A S + +D + + +
Sbjct: 164 LWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSR-----LEVDYYAFTG 218
Query: 297 HKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356
HK+ GP G L + LG P+ G ++ Y T + E + E T
Sbjct: 219 HKWFAGPAGVGGLYIHGDC--LGEINPTYVGWRSITYGAKGEP--TGWAEGGKRFE-VAT 273
Query: 357 PQVIQMI--RAALAFWVKEYIGHEVIKKQEETYI-ERALERLLPNQNIKILGNTSTKRQA 413
Q AAL + G + Q E L ++ L TS +
Sbjct: 274 SAYPQYAGLLAALQ-LHQR-QGTAEERYQAICQRSEFLWRGLNQLPHVHCLA-TSAPQAG 330
Query: 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473
++SF + D PL + L + I R A
Sbjct: 331 LVSFTV-----------------DSPLGHRAIVQKL-EEQRIYLR---TIA--------- 360
Query: 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522
P R Y EE L L
Sbjct: 361 --------------------DPDCIRACCHYITDEEEINHLLARLADFG 389
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* Length = 371 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 2e-19
Identities = 52/338 (15%), Positives = 100/338 (29%), Gaps = 53/338 (15%)
Query: 98 INNVLPFYGNTHTCD-----SYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152
+L + CD T + N + K LG D +G A
Sbjct: 26 RQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGC---DVARVT-NGAREA 81
Query: 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD 212
VM S+ ++ V + + H+S+ ++ ++ + + D
Sbjct: 82 K---FAVMH----SLAKKD------AW----VVMDENCHYSSYVAAERAGLNIALVPKTD 124
Query: 213 --DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270
D + E +E K +L + G D + IA++ +Y +
Sbjct: 125 YPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNG 184
Query: 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGT 330
A + + + + + G D I S HK + G G++ M + ++
Sbjct: 185 AYAIGRMPVSL---KEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKE 241
Query: 331 VNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390
V + + G + M A+ V+E I +E R
Sbjct: 242 VELLGCT---------------ARGATIITLM--ASFPH-VRERIKRW---DEEVEKARR 280
Query: 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSL 428
+ IK LG+ + I+
Sbjct: 281 FAAE-MEKLGIKQLGDNPHNHDLMFFHAEVLYEISKKA 317
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 Length = 416 | Back alignment and structure |
|---|
Score = 78.3 bits (193), Expect = 1e-15
Identities = 57/362 (15%), Positives = 122/362 (33%), Gaps = 46/362 (12%)
Query: 67 AEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTT----NM 122
+F P + Y D + G + +GN + + ++
Sbjct: 21 QQFALP---EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGL-----IRSWNSAGWRDL 72
Query: 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERW 182
N + +G + + T+ + ++ + + LR ++ R ER
Sbjct: 73 SERLGNRLATLIGARDGE--VVVTDTTSINLFKV-------LSAALR---VQATRSPERR 120
Query: 183 VVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSAC 242
V+ ++L + LA++++ G + E L + + + +
Sbjct: 121 VIVTETSNFPTDLYIA-EGLADMLQQGYTLRLVDSPEELPQAI-----DQDTAVVMLTHV 174
Query: 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFL-G 301
+ TG D +++ L H+ G A +D A S V +D+ G D T+K+L G
Sbjct: 175 NYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDL---HQAGADYAIGCTYKYLNG 231
Query: 302 GPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ 361
GPGS + ++ L P G + F + + R GT +
Sbjct: 232 GPGSQAFVWVSPQL--CDLVPQPLSGWFGHS--RQFAMEPRYEPSNGIARYLCGTQPITS 287
Query: 362 MI--RAALAFWVKEYIGHEVIKKQEET---YIERALERLLPNQNIKILG-NTSTKRQAIL 415
+ L + + ++++ +E+ + ++ KR + +
Sbjct: 288 LAMVECGLDVFAQ--TDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHV 345
Query: 416 SF 417
SF
Sbjct: 346 SF 347
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 9e-14
Identities = 99/696 (14%), Positives = 195/696 (28%), Gaps = 249/696 (35%)
Query: 23 EFE-NEQPHHHS-----------ESFGAQDMGSVPKSISSSEK---------------KL 55
+FE E + + ++F +D+ +PKSI S E+ +L
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 56 TWL----QSQI----IGKNAEFDSPFGKRRLTYADHTASGRSLRYIE--NYIINNVLPFY 105
W Q ++ + + + F + S + YIE + + N+ F
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF- 126
Query: 106 GNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFC----GSGTTAAIKRLQEVMG 161
Y + + + +++ L + + GSG T +
Sbjct: 127 ------AKY---NVSR--LQPYLKLRQALLELRPAKNVLIDGVLGSGKT--------WVA 167
Query: 162 IAVPSILREKLIKCLRDEE-RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDI-E 219
+ V ++C D + W+ +L Q L + +I + D
Sbjct: 168 LDV---CLSYKVQCKMDFKIFWLNL-KNCNSPETVLEMLQKL--LYQIDPNWTSRSDHSS 221
Query: 220 ALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE- 278
++ ++ + R RLL PY
Sbjct: 222 NIKLRIHSIQAELR-----------------------RLLKSK------------PYENC 246
Query: 279 --I--DVRSGQT-DGYDAIFLSTHKFLGGPGSPGILLMTK------ALYQLGSFPPSTCG 327
+ +V++ + + ++ ILL T+ L + S
Sbjct: 247 LLVLLNVQNAKAWNAFN------------LSCK-ILLTTRFKQVTDFLSAATTTHISL-- 291
Query: 328 GGTVNYVNGFNEKDTLYL---------EDIEERESGGTPQVIQMIRAAL----AFWVKEY 374
++ + L +D+ P+ + +I ++ A W +
Sbjct: 292 ---DHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW--DN 346
Query: 375 IGHEVIKKQEETYIERALERLLPN-------------QNIKI------------------ 403
H K IE +L L P + I
Sbjct: 347 WKHVNCDKLTTI-IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405
Query: 404 -----LGNTS--TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATL-------L 449
L S K+ + +I S L K E + LH V
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSI----YLELKVKLENEYALHRSIVDHYNIPKTFDS 461
Query: 450 NDLFGIQARGGCACAGPY-----GHHLLDLDEAQSYQIRSAI--------QKGYVGVKPG 496
+DL Y GHHL +++ + + + QK ++
Sbjct: 462 DDLIPPYLDQ-------YFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK----IRHD 510
Query: 497 WTRISFPYYMSNEEFEFTLEALE----FI----AIYGQRFLPLYNFNIKTGTWCFMTAFE 548
T + + N TL+ L+ +I Y + + +F K + +
Sbjct: 511 STAWNASGSILN-----TLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYT 565
Query: 549 ELIIGKQNSHKLHAKQATVPAEDEYAIYLENARHIA 584
+L+ + + AEDE I+ E + +
Sbjct: 566 DLL------------RIALMAEDEA-IFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 4e-05
Identities = 62/395 (15%), Positives = 101/395 (25%), Gaps = 131/395 (33%)
Query: 189 HEHHSNLLSWRQSLAEVVEIGLDDDGLLDI--EALRSKLELY--KDAKRPILGSFSACSN 244
H HH + E E +L + +A + +D + IL +
Sbjct: 3 HHHHMDF--------ETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSK-EEIDH 53
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
+ RL F S Q + KF+
Sbjct: 54 IIMSKDAVSGTLRL------FWTL-------------LSKQEEMVQ-------KFVEEVL 87
Query: 305 SPGI-LLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI 363
LM+ + PS T Y+ ++D LY QV
Sbjct: 88 RINYKFLMSP--IKTEQRQPS---MMTRMYIE---QRDRLY----------NDNQV---- 125
Query: 364 RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKI-----LGNT--------STK 410
+ + V + Q + +AL L P +N+ I G T S K
Sbjct: 126 ----------FAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 411 RQAILSFNIH--------------------SSTINSSLGENTKTETDKPLHGPFVATLLN 450
Q + F I I+ + + ++ L + L
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR 235
Query: 451 DLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSA--IQ---------KGYVGVKPGWTR 499
L + PY + LL L Q+ + +A + K T
Sbjct: 236 RLLKSK---------PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286
Query: 500 ISFPYYMSNEEFEFTL-EALEFIAIY-GQRF--LP 530
+ + T E + Y R LP
Sbjct: 287 THIS--LDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Length = 502 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 39/211 (18%), Positives = 75/211 (35%), Gaps = 31/211 (14%)
Query: 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGT---TAAIKRLQEVMGIAVPSILREKLIKC 175
TT + + N I E+A G GT + AI + G+A + K
Sbjct: 93 TTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAI----MLAGLAFKRKWQNKRKAE 148
Query: 176 LRDEERWVVFVGPHEHHSNLLSWRQSLA----EVVEIGLDDDGL-LDIEALRSKLELYKD 230
+ ++ + G + W + E+ E+ L + +D + ++
Sbjct: 149 GKPVDKPNIVTGANVQV----CWEKFARYFEVELKEVKLSEGYYVMDPQQAVDMVDENTI 204
Query: 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF-----AASG----PYVEIDV 281
ILGS + G + D + + LL + +D AASG P++ ++
Sbjct: 205 CVAAILGST-----LNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPEL 259
Query: 282 RSG-QTDGYDAIFLSTHKFLGGPGSPGILLM 311
+ +I +S HK+ G ++
Sbjct: 260 EWDFRLPLVKSINVSGHKYGLVYAGIGWVIW 290
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* Length = 384 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 35/221 (15%), Positives = 67/221 (30%), Gaps = 57/221 (25%)
Query: 102 LPF----YGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA---AIK 154
+ F YGN ++ G + +A + K LG + F T + +K
Sbjct: 22 IVFYREKYGNPNSAHGM-GIEANLHMEKAREKVAKVLGV-SPSEIFFTSCATESINWILK 79
Query: 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPH------EHHSNLLSWRQSLA----E 204
+A ++ EH + L + + L+ +
Sbjct: 80 ------TVA--ETFEKR---------------KRTIITTPIEHKAVLETMKY-LSMKGFK 115
Query: 205 VVEIGLDDDGLLDIEALRSKLELYKDAKRP--ILGSFSACSNVTGIYSDTRSIARLLHQY 262
V + +D G++ +E L + L S A +N G + R++ +
Sbjct: 116 VKYVPVDSRGVVKLEEL-------EKLVDEDTFLVSIMAANNEVGTIQPVEDVTRIVKKK 168
Query: 263 GGFACF--DFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLG 301
D + + + + D S HKF G
Sbjct: 169 NKETLVHVDAVQTIGKIPFSL---EKLEVDYASFSAHKFHG 206
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* Length = 514 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 25/125 (20%), Positives = 44/125 (35%), Gaps = 19/125 (15%)
Query: 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY- 262
++V LD D D+ A+R + ++ + SA G+ IA L ++
Sbjct: 215 KLVRTPLDADYRADVAAMREAIT-----PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHG 269
Query: 263 ---------GGF-ACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312
GGF + P D R +G ++ THK+ G ++L
Sbjct: 270 IGCHVDACLGGFILPWAERLGYPVPPFDFRL---EGVTSVSADTHKYGYGAKGTSVILYR 326
Query: 313 KALYQ 317
+
Sbjct: 327 RPDLL 331
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Length = 474 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVT-----GIY-SDTRSIAR 257
+V EI +G +D+EAL+ + LG A +T G++ I+R
Sbjct: 179 QVREIPSGPEGEVDLEALKRE-----------LGPHVAALMLTNPNTLGLFERRILEISR 227
Query: 258 LLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHK-FL-----GGPGS 305
L + G +D A + R G G+D + L+ HK F GGPGS
Sbjct: 228 LCKEAGVQLYYDGANLNAIMGW-ARPGDM-GFDVVHLNLHKTFTVPHGGGGPGS 279
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* Length = 382 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 48/222 (21%), Positives = 71/222 (31%), Gaps = 62/222 (27%)
Query: 102 LPF----YGN---THTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA--- 151
LP+ +GN H+ G V EA + K + G ++F T A
Sbjct: 21 LPYMTESFGNPSSVHS----YGFKAREAVQEAREKVAKLVNG-GGGTVVFTSGATEANNL 75
Query: 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPH------EHHSNLLSWRQSLA-- 203
AI G A K G H EH S + + L
Sbjct: 76 AII------GYA--MRNARK---------------GKHILVSAVEHMSVINPAKF-LQKQ 111
Query: 204 --EVVEIGLDDDGLLDIEALRSKLELYKDAKRP--ILGSFSACSNVTGIYSDTRSIARLL 259
EV I + G +D+ + R IL S +N G I+ +L
Sbjct: 112 GFEVEYIPVGKYGEVDVSFI-------DQKLRDDTILVSVQHANNEIGTIQPVEEISEVL 164
Query: 260 HQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLG 301
D AS +E+DV + G D + +S++ G
Sbjct: 165 AGKAALHI-DATASVGQIEVDV---EKIGADMLTISSNDIYG 202
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 Length = 456 | Back alignment and structure |
|---|
Score = 41.2 bits (96), Expect = 9e-04
Identities = 16/114 (14%), Positives = 34/114 (29%), Gaps = 14/114 (12%)
Query: 205 VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYG- 263
V + D + +E + + ++ + + D IA++ Y
Sbjct: 203 VETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDI 262
Query: 264 ------GFACFDFAASGPYVEI-DVRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310
+A + + R DA+ S+ K L P G++
Sbjct: 263 PHIINGAYAIQNNYYLEKLKKAFKYRV------DAVVSSSDKNLLTPIGGGLVY 310
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| 4hvk_A | 382 | Probable cysteine desulfurase 2; transferase and I | 100.0 | |
| 3lvm_A | 423 | Cysteine desulfurase; structural genomics, montrea | 100.0 | |
| 1kmj_A | 406 | Selenocysteine lyase; persulfide perselenide NIFS | 100.0 | |
| 4eb5_A | 382 | Probable cysteine desulfurase 2; scaffold, transfe | 100.0 | |
| 1t3i_A | 420 | Probable cysteine desulfurase; PLP-binding enzyme, | 100.0 | |
| 3cai_A | 406 | Possible aminotransferase; RV3778C; 1.80A {Mycobac | 100.0 | |
| 1eg5_A | 384 | Aminotransferase; PLP-dependent enzymes, iron-sulf | 100.0 | |
| 3e77_A | 377 | Phosphoserine aminotransferase; SERC, PLP, structu | 100.0 | |
| 3vax_A | 400 | Putative uncharacterized protein DNDA; desulfurase | 100.0 | |
| 3e9k_A | 465 | Kynureninase; kynurenine-L-hydrolase, kynurenine h | 100.0 | |
| 1elu_A | 390 | L-cysteine/L-cystine C-S lyase; FES cluster biosyn | 100.0 | |
| 3qm2_A | 386 | Phosphoserine aminotransferase; structural genomic | 100.0 | |
| 2dr1_A | 386 | PH1308 protein, 386AA long hypothetical serine ami | 100.0 | |
| 2z9v_A | 392 | Aspartate aminotransferase; pyridoxamine, pyruvate | 100.0 | |
| 1qz9_A | 416 | Kynureninase; kynurenine, tryptophan, PLP, vitamin | 100.0 | |
| 3a9z_A | 432 | Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph | 100.0 | |
| 2huf_A | 393 | Alanine glyoxylate aminotransferase; alpha and bet | 100.0 | |
| 2ch1_A | 396 | 3-hydroxykynurenine transaminase; PLP-enzyme, kynu | 100.0 | |
| 3m5u_A | 361 | Phosphoserine aminotransferase; alpha-beta half sa | 100.0 | |
| 1vjo_A | 393 | Alanine--glyoxylate aminotransferase; 17130350, AL | 100.0 | |
| 3nnk_A | 411 | Ureidoglycine-glyoxylate aminotransferase; PLP-dep | 100.0 | |
| 1iug_A | 352 | Putative aspartate aminotransferase; wild type, py | 100.0 | |
| 3ffr_A | 362 | Phosphoserine aminotransferase SERC; structural ge | 100.0 | |
| 3zrp_A | 384 | Serine-pyruvate aminotransferase (AGXT); HET: PLP; | 100.0 | |
| 3kgw_A | 393 | Alanine-glyoxylate aminotransferase; AAH25799.1, p | 100.0 | |
| 3isl_A | 416 | Purine catabolism protein PUCG; pyridoxalphosphate | 100.0 | |
| 2e7j_A | 371 | SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st | 100.0 | |
| 3f0h_A | 376 | Aminotransferase; RER070207000802, structural geno | 100.0 | |
| 2yrr_A | 353 | Aminotransferase, class V; structural genomics, NP | 100.0 | |
| 3f9t_A | 397 | TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L | 100.0 | |
| 2jis_A | 515 | Cysteine sulfinic acid decarboxylase; pyridoxal ph | 100.0 | |
| 2qma_A | 497 | Diaminobutyrate-pyruvate transaminase and L-2,4- d | 100.0 | |
| 2dgk_A | 452 | GAD-beta, GADB, glutamate decarboxylase beta; gadb | 99.98 | |
| 1m32_A | 366 | 2-aminoethylphosphonate-pyruvate aminotransferase; | 99.98 | |
| 2okj_A | 504 | Glutamate decarboxylase 1; PLP-dependent decarboxy | 99.98 | |
| 2c0r_A | 362 | PSAT, phosphoserine aminotransferase; pyridoxal-5' | 99.97 | |
| 3hbx_A | 502 | GAD 1, glutamate decarboxylase 1; calmodulin-bindi | 99.97 | |
| 2z67_A | 456 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.97 | |
| 3k40_A | 475 | Aromatic-L-amino-acid decarboxylase; PLP dependent | 99.97 | |
| 2bkw_A | 385 | Alanine-glyoxylate aminotransferase 1; analine-gly | 99.97 | |
| 3vp6_A | 511 | Glutamate decarboxylase 1; catalytic loop SWAP, ly | 99.97 | |
| 1w23_A | 360 | Phosphoserine aminotransferase; pyridoxal-5'-phosp | 99.97 | |
| 4e1o_A | 481 | HDC, histidine decarboxylase; lyase; HET: PLP PVH; | 99.97 | |
| 1js3_A | 486 | DDC;, DOPA decarboxylase; carbidopa, parkinson'S d | 99.97 | |
| 3ke3_A | 379 | Putative serine-pyruvate aminotransferase; structu | 99.97 | |
| 3ffh_A | 363 | Histidinol-phosphate aminotransferase; APC88260, l | 99.97 | |
| 1rv3_A | 483 | Serine hydroxymethyltransferase, cytosolic; one-ca | 99.97 | |
| 3mc6_A | 497 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 3mad_A | 514 | Sphingosine-1-phosphate lyase; carboxy-lyase activ | 99.96 | |
| 1wyu_A | 438 | Glycine dehydrogenase (decarboxylating) subunit 1; | 99.96 | |
| 3ly1_A | 354 | Putative histidinol-phosphate aminotransferase; st | 99.96 | |
| 3get_A | 365 | Histidinol-phosphate aminotransferase; NP_281508.1 | 99.96 | |
| 3euc_A | 367 | Histidinol-phosphate aminotransferase 2; YP_297314 | 99.96 | |
| 3dzz_A | 391 | Putative pyridoxal 5'-phosphate-dependent C-S LYA; | 99.96 | |
| 1svv_A | 359 | Threonine aldolase; structural genomics, structura | 99.96 | |
| 4dq6_A | 391 | Putative pyridoxal phosphate-dependent transferas; | 99.96 | |
| 3nra_A | 407 | Aspartate aminotransferase; structural genomics, j | 99.96 | |
| 3kax_A | 383 | Aminotransferase, classes I and II; PLP, C-S lyase | 99.96 | |
| 2fyf_A | 398 | PSAT, phosphoserine aminotransferase; PLP-dependen | 99.96 | |
| 2bwn_A | 401 | 5-aminolevulinate synthase; tetrapyrrole biosynthe | 99.96 | |
| 1fc4_A | 401 | 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino | 99.96 | |
| 3tqx_A | 399 | 2-amino-3-ketobutyrate coenzyme A ligase; energy m | 99.96 | |
| 3p1t_A | 337 | Putative histidinol-phosphate aminotransferase; PL | 99.96 | |
| 1j32_A | 388 | Aspartate aminotransferase; HET: PLP; 2.10A {Phorm | 99.96 | |
| 2w8t_A | 427 | SPT, serine palmitoyltransferase; HET: LLP; 1.25A | 99.96 | |
| 1bw0_A | 416 | TAT, protein (tyrosine aminotransferase); tyrosine | 99.95 | |
| 3ftb_A | 361 | Histidinol-phosphate aminotransferase; structural | 99.95 | |
| 3a2b_A | 398 | Serine palmitoyltransferase; vitamin B6-dependent | 99.95 | |
| 1o4s_A | 389 | Aspartate aminotransferase; TM1255, structural gen | 99.95 | |
| 2fnu_A | 375 | Aminotransferase; protein-product complex, structu | 99.95 | |
| 1gd9_A | 389 | Aspartate aminotransferase; pyridoxal enzyme, temp | 99.95 | |
| 3dyd_A | 427 | Tyrosine aminotransferase; PLP, SGC, structural ge | 99.95 | |
| 3g0t_A | 437 | Putative aminotransferase; NP_905498.1, putative a | 99.95 | |
| 1xi9_A | 406 | Putative transaminase; alanine aminotransferase, s | 99.95 | |
| 2vi8_A | 405 | Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, | 99.95 | |
| 2zyj_A | 397 | Alpha-aminodipate aminotransferase; alpha-aminoadi | 99.95 | |
| 1wyu_B | 474 | Glycine dehydrogenase subunit 2 (P-protein); alpha | 99.95 | |
| 3hdo_A | 360 | Histidinol-phosphate aminotransferase; PSI-II, his | 99.95 | |
| 2zc0_A | 407 | Alanine glyoxylate transaminase; alanine:glyoxylat | 99.95 | |
| 3frk_A | 373 | QDTB; aminotransferase, sugar-modification, natura | 99.95 | |
| 3kki_A | 409 | CAI-1 autoinducer synthase; quorum sensing, CQSA, | 99.95 | |
| 1v2d_A | 381 | Glutamine aminotransferase; PLP, riken structural | 99.95 | |
| 1c7n_A | 399 | Cystalysin; transferase, aminotransferase, pyridox | 99.95 | |
| 1b5p_A | 385 | Protein (aspartate aminotransferase); pyridoxal en | 99.95 | |
| 1bs0_A | 384 | Protein (8-amino-7-oxonanoate synthase); PLP-depen | 99.95 | |
| 1u08_A | 386 | Hypothetical aminotransferase YBDL; alpha beta pro | 99.95 | |
| 2x5d_A | 412 | Probable aminotransferase; HET: LLP PLP; 2.25A {Ps | 99.95 | |
| 3l8a_A | 421 | METC, putative aminotransferase, probable beta-cys | 99.95 | |
| 1v72_A | 356 | Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2 | 99.95 | |
| 2cb1_A | 412 | O-acetyl homoserine sulfhydrylase; PLP enzyme, lya | 99.95 | |
| 1d2f_A | 390 | MALY protein; aminotransferase fold, large PLP-bin | 99.95 | |
| 2z61_A | 370 | Probable aspartate aminotransferase 2; amino acid | 99.94 | |
| 1lc5_A | 364 | COBD, L-threonine-O-3-phosphate decarboxylase; PLP | 99.94 | |
| 1yiz_A | 429 | Kynurenine aminotransferase; glutamine transaminas | 99.94 | |
| 2o0r_A | 411 | RV0858C (N-succinyldiaminopimelate aminotransfera; | 99.94 | |
| 3cq5_A | 369 | Histidinol-phosphate aminotransferase; PLP, PMP, a | 99.94 | |
| 1o69_A | 394 | Aminotransferase; structural genomics, unknown fun | 99.94 | |
| 2rfv_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate, PL | 99.94 | |
| 3fdb_A | 377 | Beta C-S lyase, putative PLP-dependent beta-cystat | 99.94 | |
| 3h14_A | 391 | Aminotransferase, classes I and II; YP_167802.1, S | 99.94 | |
| 3uwc_A | 374 | Nucleotide-sugar aminotransferase; lipopolysacchar | 99.94 | |
| 2c81_A | 418 | Glutamine-2-deoxy-scyllo-inosose aminotransferase; | 99.94 | |
| 1gc0_A | 398 | Methionine gamma-lyase; pyridoxal-5'-phosphate; HE | 99.94 | |
| 1b9h_A | 388 | AHBA synthase, protein (3-amino-5-hydroxybenzoic a | 99.94 | |
| 2o1b_A | 404 | Aminotransferase, class I; aminotrasferase; HET: P | 99.94 | |
| 1pff_A | 331 | Methionine gamma-lyase; homocysteine; 2.50A {Trich | 99.94 | |
| 3ele_A | 398 | Amino transferase; RER070207001803, structural gen | 99.94 | |
| 2dkj_A | 407 | Serine hydroxymethyltransferase; PLP dependent enz | 99.94 | |
| 3fvs_A | 422 | Kynurenine--oxoglutarate transaminase 1; alpha bet | 99.94 | |
| 3b8x_A | 390 | WBDK, pyridoxamine 5-phosphate-dependent dehydrase | 99.94 | |
| 1mdo_A | 393 | ARNB aminotransferase; type 1 aminotransferase fol | 99.94 | |
| 2dou_A | 376 | Probable N-succinyldiaminopimelate aminotransfera; | 99.94 | |
| 3aow_A | 448 | Putative uncharacterized protein PH0207; protein-P | 99.94 | |
| 3e2y_A | 410 | Kynurenine-oxoglutarate transaminase 3; alpha beta | 99.94 | |
| 3jtx_A | 396 | Aminotransferase; NP_283882.1, structural genomics | 99.94 | |
| 1iay_A | 428 | ACC synthase 2, 1-aminocyclopropane-1-carboxylate | 99.94 | |
| 3dr4_A | 391 | Putative perosamine synthetase; deoxysugar, pyrido | 99.94 | |
| 2gb3_A | 409 | Aspartate aminotransferase; TM1698, structural gen | 99.94 | |
| 1fg7_A | 356 | Histidinol phosphate aminotransferase; HISC, histi | 99.94 | |
| 1qgn_A | 445 | Protein (cystathionine gamma-synthase); methionine | 99.94 | |
| 1vp4_A | 425 | Aminotransferase, putative; structural genomics, j | 99.94 | |
| 3op7_A | 375 | Aminotransferase class I and II; PLP-dependent tra | 99.93 | |
| 3piu_A | 435 | 1-aminocyclopropane-1-carboxylate synthase; fruit | 99.93 | |
| 3ezs_A | 376 | Aminotransferase ASPB; NP_207418.1, structural gen | 99.93 | |
| 3n0l_A | 417 | Serine hydroxymethyltransferase; alpha beta class, | 99.93 | |
| 3qgu_A | 449 | LL-diaminopimelate aminotransferase; L-lysine, pyr | 99.93 | |
| 3fkd_A | 350 | L-threonine-O-3-phosphate decarboxylase; structura | 99.93 | |
| 2x3l_A | 446 | ORN/Lys/Arg decarboxylase family protein; lyase; H | 99.93 | |
| 2r2n_A | 425 | Kynurenine/alpha-aminoadipate aminotransferase mit | 99.93 | |
| 3if2_A | 444 | Aminotransferase; YP_265399.1, structura genomics, | 99.93 | |
| 3gbx_A | 420 | Serine hydroxymethyltransferase; structural genomi | 99.93 | |
| 1cs1_A | 386 | CGS, protein (cystathionine gamma-synthase); lyase | 99.93 | |
| 2oga_A | 399 | Transaminase; PLP-dependent enzyme, desosamine, de | 99.93 | |
| 1e5e_A | 404 | MGL, methionine gamma-lyase; methionine biosynthes | 99.93 | |
| 1jg8_A | 347 | L-ALLO-threonine aldolase; glycine biosynthesis, p | 99.93 | |
| 3cog_A | 403 | Cystathionine gamma-lyase; CTH, PLP, propargylglyc | 99.93 | |
| 2fq6_A | 415 | Cystathionine beta-lyase; protein-inhibitor comple | 99.93 | |
| 3nyt_A | 367 | Aminotransferase WBPE; PLP binding, nucleotide-sug | 99.92 | |
| 3ruy_A | 392 | Ornithine aminotransferase; structural genomics, c | 99.92 | |
| 2eh6_A | 375 | Acoat, acetylornithine aminotransferase; ARGD, str | 99.92 | |
| 2a7v_A | 490 | Serine hydroxymethyltransferase; structural genomi | 99.92 | |
| 3ppl_A | 427 | Aspartate aminotransferase; dimer, PLP-dependent t | 99.92 | |
| 3b46_A | 447 | Aminotransferase BNA3; kynurenine aminotransferase | 99.92 | |
| 1vef_A | 395 | Acetylornithine/acetyl-lysine aminotransferase; PL | 99.92 | |
| 3tcm_A | 500 | Alanine aminotransferase 2; pyridoxal phosphate (P | 99.92 | |
| 1n8p_A | 393 | Cystathionine gamma-lyase; three open alpha/beta s | 99.92 | |
| 3qhx_A | 392 | Cystathionine gamma-synthase METB (CGS); structura | 99.92 | |
| 3ei9_A | 432 | LL-diaminopimelate aminotransferase; lysine biosyn | 99.92 | |
| 1uu1_A | 335 | Histidinol-phosphate aminotransferase; histidine b | 99.92 | |
| 3ju7_A | 377 | Putative PLP-dependent aminotransferase; NP_978343 | 99.92 | |
| 3ez1_A | 423 | Aminotransferase MOCR family; YP_604413.1, struct | 99.92 | |
| 3asa_A | 400 | LL-diaminopimelate aminotransferase; PLP dependent | 99.92 | |
| 3h7f_A | 447 | Serine hydroxymethyltransferase 1; cytoplasm, one- | 99.92 | |
| 2ctz_A | 421 | O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac | 99.92 | |
| 3bb8_A | 437 | CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat | 99.91 | |
| 3acz_A | 389 | Methionine gamma-lyase; L-methionine; HET: LLP; 1. | 99.91 | |
| 1c4k_A | 730 | Protein (ornithine decarboxylase); lyase; HET: PLP | 99.91 | |
| 3ndn_A | 414 | O-succinylhomoserine sulfhydrylase; seattle struct | 99.91 | |
| 2po3_A | 424 | 4-dehydrase; external aldimine, PLP, aminotransfer | 99.91 | |
| 2x5f_A | 430 | Aspartate_tyrosine_phenylalanine pyridoxal-5' phos | 99.91 | |
| 3g7q_A | 417 | Valine-pyruvate aminotransferase; NP_462565.1, str | 99.91 | |
| 2vyc_A | 755 | Biodegradative arginine decarboxylase; pyridoxal p | 99.91 | |
| 3ihj_A | 498 | Alanine aminotransferase 2; helix, structural geno | 99.91 | |
| 3ecd_A | 425 | Serine hydroxymethyltransferase 2; ssgcid, decode, | 99.91 | |
| 1s0a_A | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.91 | |
| 1ibj_A | 464 | CBL, cystathionine beta-lyase; PLP-dependent enzym | 99.9 | |
| 3d6k_A | 422 | Putative aminotransferase; APC82464, corynebacteri | 99.9 | |
| 3ri6_A | 430 | O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate | 99.9 | |
| 2ord_A | 397 | Acoat, acetylornithine aminotransferase; TM1785, a | 99.9 | |
| 3f6t_A | 533 | Aspartate aminotransferase; YP_194538.1, STRU geno | 99.89 | |
| 1ax4_A | 467 | Tryptophanase; tryptophan biosynthesis, tryptophan | 99.89 | |
| 3rq1_A | 418 | Aminotransferase class I and II; structural genomi | 99.89 | |
| 2aeu_A | 374 | Hypothetical protein MJ0158; selenocysteine syntha | 99.89 | |
| 7aat_A | 401 | Aspartate aminotransferase; transferase(aminotrans | 99.89 | |
| 1sff_A | 426 | 4-aminobutyrate aminotransferase; enzyme complexes | 99.89 | |
| 4adb_A | 406 | Succinylornithine transaminase; transferase, PLP e | 99.89 | |
| 2ez2_A | 456 | Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend | 99.89 | |
| 3b1d_A | 392 | Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ | 99.81 | |
| 2pb2_A | 420 | Acetylornithine/succinyldiaminopimelate aminotran; | 99.88 | |
| 3meb_A | 448 | Aspartate aminotransferase; pyridoxal PHOS transfe | 99.88 | |
| 3nmy_A | 400 | Xometc, cystathionine gamma-lyase-like protein; Cy | 99.88 | |
| 3nx3_A | 395 | Acoat, acetylornithine aminotransferase; csgid, st | 99.88 | |
| 3pj0_A | 359 | LMO0305 protein; structural genomics, joint center | 99.88 | |
| 3fsl_A | 397 | Aromatic-amino-acid aminotransferase; tyrosine ami | 99.88 | |
| 3t18_A | 413 | Aminotransferase class I and II; PSI-biology, MCSG | 99.88 | |
| 3lws_A | 357 | Aromatic amino acid beta-eliminating lyase/threoni | 99.87 | |
| 1yaa_A | 412 | Aspartate aminotransferase; HET: PLP; 2.05A {Sacch | 99.87 | |
| 1ajs_A | 412 | Aspartate aminotransferase; PIG, in the presence o | 99.87 | |
| 3bwn_A | 391 | AT1G70560, L-tryptophan aminotransferase; auxin sy | 99.87 | |
| 3dxv_A | 439 | Alpha-amino-epsilon-caprolactam racemase; fold-TYP | 99.87 | |
| 2eo5_A | 419 | 419AA long hypothetical aminotransferase; PLP enzy | 99.87 | |
| 4f4e_A | 420 | Aromatic-amino-acid aminotransferase; ssgcid, stru | 99.87 | |
| 2oat_A | 439 | Ornithine aminotransferase; 5-fluoromethylornithin | 99.87 | |
| 2oqx_A | 467 | Tryptophanase; lyase, pyridoxal phosphate, tryptop | 99.86 | |
| 2q7w_A | 396 | Aspartate aminotransferase; mechanism-based inhibi | 99.86 | |
| 2ay1_A | 394 | Aroat, aromatic amino acid aminotransferase; HET: | 99.86 | |
| 1z7d_A | 433 | Ornithine aminotransferase; structural genomics co | 99.86 | |
| 3i4j_A | 430 | Aminotransferase, class III; structural GENOMICS,N | 99.86 | |
| 3n5m_A | 452 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.85 | |
| 3a8u_X | 449 | Omega-amino acid--pyruvate aminotransferase; large | 99.85 | |
| 3tfu_A | 457 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.84 | |
| 3jzl_A | 409 | Putative cystathionine beta-lyase involved in ALU | 99.84 | |
| 3dod_A | 448 | Adenosylmethionine-8-amino-7-oxononanoate aminotr; | 99.84 | |
| 2cjg_A | 449 | L-lysine-epsilon aminotransferase; internal aldimi | 99.83 | |
| 3gju_A | 460 | Putative aminotransferase; pyridoxal phosphate, PL | 99.83 | |
| 3hvy_A | 427 | Cystathionine beta-lyase family protein, YNBB B.S | 99.83 | |
| 3oks_A | 451 | 4-aminobutyrate transaminase; ssgcid, transferase, | 99.83 | |
| 3n75_A | 715 | LDC, lysine decarboxylase, inducible; pyridoxal-5' | 99.82 | |
| 3i16_A | 427 | Aluminum resistance protein; YP_878183.1, carbon-s | 99.82 | |
| 4ffc_A | 453 | 4-aminobutyrate aminotransferase (GABT); structura | 99.82 | |
| 1zod_A | 433 | DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, | 99.82 | |
| 4a6r_A | 459 | Omega transaminase; transferase, PLP-binding enzym | 99.82 | |
| 2hox_A | 427 | ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA | 99.81 | |
| 3l44_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha | 99.81 | |
| 4eu1_A | 409 | Mitochondrial aspartate aminotransferase; ssgcid, | 99.81 | |
| 2zy4_A | 546 | L-aspartate beta-decarboxylase; pyridoxal 5'-phosp | 99.81 | |
| 3hmu_A | 472 | Aminotransferase, class III; structural genomics, | 99.8 | |
| 3k28_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn | 99.8 | |
| 3bc8_A | 450 | O-phosphoseryl-tRNA(SEC) selenium transferase; dis | 99.8 | |
| 3i5t_A | 476 | Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N | 99.8 | |
| 3fq8_A | 427 | Glutamate-1-semialdehyde 2,1-aminomutase; drug res | 99.79 | |
| 3ht4_A | 431 | Aluminum resistance protein; lyase, putative cysta | 99.78 | |
| 3ou5_A | 490 | Serine hydroxymethyltransferase, mitochondrial; st | 99.78 | |
| 4e77_A | 429 | Glutamate-1-semialdehyde 2,1-aminomutase; structur | 99.78 | |
| 2epj_A | 434 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.78 | |
| 1ohv_A | 472 | 4-aminobutyrate aminotransferase; PLP-dependent en | 99.78 | |
| 2cy8_A | 453 | D-phgat, D-phenylglycine aminotransferase; structu | 99.76 | |
| 3k7y_A | 405 | Aspartate aminotransferase; aminotrans pyridoxal p | 99.75 | |
| 2e7u_A | 424 | Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy | 99.73 | |
| 3hl2_A | 501 | O-phosphoseryl-tRNA(SEC) selenium transferase; sel | 99.71 | |
| 4h51_A | 420 | Aspartate aminotransferase; ssgcid, structural gen | 99.66 | |
| 4ao9_A | 454 | Beta-phenylalanine aminotransferase; HET: PLP; 1.5 | 99.62 | |
| 4atq_A | 456 | 4-aminobutyrate transaminase; transferase; HET: PL | 99.61 | |
| 2yky_A | 465 | Beta-transaminase; transferase; HET: PLP SFE; 1.69 | 99.37 | |
| 4e3q_A | 473 | Pyruvate transaminase; aminotransferase, transfera | 99.48 | |
| 4a0g_A | 831 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.36 |
| >4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-39 Score=338.68 Aligned_cols=372 Identities=23% Similarity=0.288 Sum_probs=289.1
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
+||+|++++++.++.+.+++.+.+...++|++.. +..+......++++++++++++|++++ +|+++ +|+++++..++
T Consensus 1 ~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~la~~~~~~~~-~i~~~-~g~~~a~~~~~ 77 (382)
T 4hvk_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSSV-HSYGFKAREAVQEAREKVAKLVNGGGG-TVVFT-SGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTCS-SHHHHHHHHHHHHHHHHHHHHTTCTTE-EEEEE-SSHHHHHHHHH
T ss_pred CEeecCCCcCCCCHHHHHHHHHHHHhhcCCCccc-chHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEE-CCchHHHHHHH
Confidence 4799999999999999999999998888888873 556777889999999999999999876 89998 77787888888
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH---cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ---SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
.++... ..++|| .|+++..+|+++...+.. .|++++.++.++++.+|+++|+++++ +++
T Consensus 78 ~~~~~~-----------~~~~gd--~vi~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~ 139 (382)
T 4hvk_A 78 IGYAMR-----------NARKGK--HILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR-----DDT 139 (382)
T ss_dssp HHHHHH-----------HGGGCC--EEEEETTCCHHHHHHHHHHHHTTCEEEEECBCTTSCBCHHHHHHHCC-----TTE
T ss_pred HHhhhh-----------hcCCCC--EEEECCCCcHHHHHHHHHHHhcCCEEEEeccCCCCCcCHHHHHHHhc-----cCc
Confidence 776310 016888 799999999999877655 59999999999889999999999998 689
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
+++++++++||||.+.|+++|.++|++||+ +|+|++++.+..++++... ++|++++|+||++| |.|+|+++++++
T Consensus 140 ~~v~~~~~~nptG~~~~~~~i~~l~~~~~~-li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~g-~~g~g~~~~~~~ 214 (382)
T 4hvk_A 140 ILVSVQHANNEIGTIQPVEEISEVLAGKAA-LHIDATASVGQIEVDVEKI---GADMLTISSNDIYG-PKGVGALWIRKE 214 (382)
T ss_dssp EEEECCSBCTTTCBBCCHHHHHHHHSSSSE-EEEECTTTBTTBCCCHHHH---TCSEEEEESGGGTS-CTTCEEEEEETT
T ss_pred eEEEEECCCCCceeeCCHHHHHHHHHHcCE-EEEEhHHhcCCCCCCchhc---CCCEEEEeHHHhcC-CCceEEEEEcCc
Confidence 999999999999999999999999999999 9999999988777766543 67999999999865 777999999987
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
. .+.+...+++. ..+...++++......+..++... ..+.+.+.++.+++++++.+.
T Consensus 215 ~----~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~ 271 (382)
T 4hvk_A 215 A----KLQPVILGGGQ------------------ENGLRSGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDN 271 (382)
T ss_dssp C----CCCCSSCSSCT------------------GGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred c----CcCcccccCCC------------------cCccccCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHH
Confidence 6 34455554443 345567777766654433222211 236788889999999999999
Q ss_pred hCCCCceEEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh---hhh
Q 038499 395 LLPNQNIKILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY---GHH 470 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~---~~~ 470 (609)
|+++|++++..+. ..+.+ +++|.+.. .+...+.+.|.+ .||.+++|..|..+. .+.
T Consensus 272 L~~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~~ 331 (382)
T 4hvk_A 272 VLKIEESYLNGHP-EKRLPNNVNVRFSY------------------IEGESIVLSLDM-AGIQASTGSACSSKTLQPSHV 331 (382)
T ss_dssp HTTSTTEEECSCS-SSBCTTEEEEEETT------------------CCHHHHHHHHHH-TTCBCBCC--------CCCHH
T ss_pred HhcCCCeEEeCCc-cccCCCEEEEEECC------------------CCHHHHHHHHHH-CCEEEeeCCccCCCCCcchHH
Confidence 9999999998764 23444 66666644 367888998865 599999999887532 111
Q ss_pred --hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccCCCc
Q 038499 471 --LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYN 533 (609)
Q Consensus 471 --ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~p~y~ 533 (609)
.+++++.. .++++||++++++|++|+++++++|++++++..++.|+|.
T Consensus 332 ~~~~g~~~~~---------------~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~ 381 (382)
T 4hvk_A 332 LMACGLKHEE---------------AHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR 381 (382)
T ss_dssp HHHTTCCHHH---------------HHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCC---
T ss_pred HHHcCCChhh---------------cCCeEEEEcCCCCCHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 12222211 1489999999999999999999999999998888777664
|
| >3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-38 Score=338.05 Aligned_cols=386 Identities=20% Similarity=0.269 Sum_probs=297.0
Q ss_pred CceEEecCCCCCCChHHHHHHHHHhhc--CCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 038499 76 RRLTYADHTASGRSLRYIENYIINNVL--PFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 76 ~~~vyld~~a~g~~~~~v~~ai~~~~~--~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal 153 (609)
++.+|+|+++.++.++.|.+++.+.+. ..+++++...+..+......+.++++++++++|++++ +|+|| +|+++++
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~ggt~a~ 98 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFT-SGATESD 98 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTTSCCSCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SSHHHHH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhcccccCCCccccchhHHHHHHHHHHHHHHHHHcCCCCC-eEEEe-CChHHHH
Confidence 368999999999999999999999888 7788888734566777888999999999999999876 89999 6677778
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH---cCceEEEEecCCCCCCCHHHHHHHHhhhcc
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ---SLAEVVEIGLDDDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~g~ld~e~L~~al~~~~~ 230 (609)
..++.++... ..++|| .|+++..+|+++...+.. .|++++.++.++++.+|+++|+++++
T Consensus 99 ~~a~~~l~~~-----------~~~~gd--~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~---- 161 (423)
T 3lvm_A 99 NLAIKGAANF-----------YQKKGK--HIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR---- 161 (423)
T ss_dssp HHHHHHHHHH-----------HTTTCC--EEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC----
T ss_pred HHHHHHHHHh-----------hccCCC--EEEECCccchHHHHHHHHHHHcCCEEEEeccCCCCccCHHHHHHhcC----
Confidence 8877765200 013688 799999999999887744 59999999999999999999999998
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~ 310 (609)
++++++++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... +.|++++|+||++| |.|+|+++
T Consensus 162 -~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~sK~~g-~~g~G~~~ 236 (423)
T 3lvm_A 162 -DDTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL---KVDLMSFSGHKIYG-PKGIGALY 236 (423)
T ss_dssp -TTEEEEECCSBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCTTTS---CCSEEEEESTTTTS-CSSCEEEE
T ss_pred -CCcEEEEEeCCCCCCccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCcChhhc---CCCEEEechHHhcC-CCCeEEEE
Confidence 58999999999999999999999999999999999999999988777776654 78999999999765 66799999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR--AALAFWVKEYIGHEVIKKQEETYI 388 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~--aal~~~~~~~~g~~~i~~~~~~l~ 388 (609)
++++. +..+.+...+++. ......++++...... +++.+. +. ..+.+.++.++++
T Consensus 237 ~~~~~--~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~al~~~--~~-~~~~~~~~~~~~~ 293 (423)
T 3lvm_A 237 VRRKP--RVRIEAQMHGGGH------------------ERGMRSGTLPVHQIVGMGEAYRIA--KE-EMATEMERLRGLR 293 (423)
T ss_dssp ECBTT--BCCCCCSSCSSCT------------------TTTTCCSCCCHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHH
T ss_pred Eeccc--cCCCCccccCCcc------------------cccccCCCCCHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHH
Confidence 99988 5566666555443 2334466766655443 333332 22 2688889999999
Q ss_pred HHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh--
Q 038499 389 ERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP-- 466 (609)
Q Consensus 389 ~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p-- 466 (609)
+++.+.|+++|+++++.+.......++.|.+.. .+...+.+.|.+ |.+++|..|...
T Consensus 294 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~l~~---i~v~~g~~~~~~~~ 352 (423)
T 3lvm_A 294 NRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNY------------------VEGESLIMALKD---LAVSSGSACTSASL 352 (423)
T ss_dssp HHHHHHHTTSTTEEEESCSTTBCTTEEEEEETT------------------SCHHHHHHHTTT---EECBCCCC-----C
T ss_pred HHHHHHHhcCCCEEEeCCccccCCCeEEEEeCC------------------CCHHHHHHHHhh---heeccCccccCCCc
Confidence 999999999999999876432223466666643 467788888854 999999888741
Q ss_pred ---hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccCCCcc-----cccC
Q 038499 467 ---YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNF-----NIKT 538 (609)
Q Consensus 467 ---~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~p~y~~-----~~~~ 538 (609)
+.....++.... .++++||+++..+|++|+++++++|+++++...++.|.|.. +..+
T Consensus 353 ~~~~~~~~~g~~~~~---------------~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (423)
T 3lvm_A 353 EPSYVLRALGLNDEL---------------AHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMYKQGVDLNS 417 (423)
T ss_dssp CCCHHHHHHTCCHHH---------------HHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHTSSHHHHHTTSCCCSCC
T ss_pred cccHHHHHhCCCccc---------------cCceEEEECCCCCCHHHHHHHHHHHHHHHHHhhccCccchhhhcccccCc
Confidence 111112332211 14899999999999999999999999999999998887655 6777
Q ss_pred Cceeec
Q 038499 539 GTWCFM 544 (609)
Q Consensus 539 ~~w~~~ 544 (609)
-+|+|.
T Consensus 418 ~~~~~~ 423 (423)
T 3lvm_A 418 IEWAHH 423 (423)
T ss_dssp ------
T ss_pred hhhhcC
Confidence 789874
|
| >1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-37 Score=329.56 Aligned_cols=393 Identities=25% Similarity=0.352 Sum_probs=300.9
Q ss_pred HHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 038499 55 LTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL 134 (609)
Q Consensus 55 ~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~ 134 (609)
+..+|++|+..+..+ .| +.++|||+++.++.++.+.+++.+.+...++|++...+..++.......++++.+++++
T Consensus 5 ~~~~r~~f~~~~~~~---~g-~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~ 80 (406)
T 1kmj_A 5 VDKVRADFPVLSREV---NG-LPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI 80 (406)
T ss_dssp HHHHHHTCGGGGCEE---TT-EECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhCccccccc---CC-CceEEecCCccCCCCHHHHHHHHHHHHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHc
Confidence 467899998543111 12 25899999999999999999999988877778876544455667788899999999999
Q ss_pred CC-CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH----HHcCceEEEEe
Q 038499 135 GG-GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIG 209 (609)
Q Consensus 135 g~-~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~ 209 (609)
|. +++ +|+|+ +|+++++..++.++... .+++|| .|+++.++|+++...| +..|++++.++
T Consensus 81 ~~~~~~-~v~~~-~g~t~a~~~~~~~~~~~-----------~~~~gd--~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 145 (406)
T 1kmj_A 81 NARSAE-ELVFV-RGTTEGINLVANSWGNS-----------NVRAGD--NIIISQMEHHANIVPWQMLCARVGAELRVIP 145 (406)
T ss_dssp TCSCGG-GEEEE-SSHHHHHHHHHHHTHHH-----------HCCTTC--EEEEETTCCGGGTHHHHHHHHHHTCEEEEEC
T ss_pred CCCCCC-eEEEe-CChhHHHHHHHHHhhhh-----------cCCCCC--EEEEecccchHHHHHHHHHHHhCCCEEEEEe
Confidence 99 454 89999 67777888888776200 036788 6999999999887554 45799999999
Q ss_pred cCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCc
Q 038499 210 LDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGY 289 (609)
Q Consensus 210 ~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~ 289 (609)
.++++.+|+++|+++++ ++++++++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... +.
T Consensus 146 ~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~~~~~~~---~~ 217 (406)
T 1kmj_A 146 LNPDGTLQLETLPTLFD-----EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---DC 217 (406)
T ss_dssp BCTTSCBCGGGHHHHCC-----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TC
T ss_pred cCCCCCcCHHHHHHHhc-----cCCeEEEEeCCCccccCcCCHHHHHHHHHHcCCEEEEEchhhcCCCCCccccc---CC
Confidence 98888899999999997 57999999999999999999999999999999999999999988766554433 67
Q ss_pred cEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHH--HH
Q 038499 290 DAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRA--AL 367 (609)
Q Consensus 290 D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~a--al 367 (609)
|++++|+||++| |.|+|++++++++ ++.+.+...||+.+.... ......+.....+++.|++++.+.+.. ++
T Consensus 218 d~~~~s~~K~~g-~~G~G~~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al 291 (406)
T 1kmj_A 218 DFYVFSGHKLYG-PTGIGILYVKEAL--LQEMPPWEGGGSMIATVS---LSEGTTWTKAPWRFEAGTPNTGGIIGLGAAL 291 (406)
T ss_dssp SEEEEEGGGTTS-CTTCEEEEECHHH--HHHCCCSSCSTTSEEEEE---TTTEEEECCTTGGGCCSSCCHHHHHHHHHHH
T ss_pred CEEEEEchhccC-CCCcEEEEEeHHH--HhhcCCcccCCCceeecc---cccccccCCCchhccCCCCCHHHHHHHHHHH
Confidence 999999999995 6669999999888 455666666665543321 000011122234566788887776543 34
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHH
Q 038499 368 AFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVAT 447 (609)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 447 (609)
.+. +..+.+.+.++.+++++++.+.|+++|+++++.+. .+.+++.|.+.. .+..++.+
T Consensus 292 ~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~~~~~~~~~~~------------------~~~~~~~~ 349 (406)
T 1kmj_A 292 EYV--SALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--NRLGVIAFNLGK------------------HHAYDVGS 349 (406)
T ss_dssp HHH--HHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--TCCSEEEEEETT------------------CCHHHHHH
T ss_pred HHH--HHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCC--CcCCEEEEEECC------------------CCHHHHHH
Confidence 433 33478889999999999999999999999988763 256777776532 35678888
Q ss_pred HHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 448 LLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 448 ~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.|.+ .||.+++|..|..+... ..+ .++++||+++.++|++|+++++++|+++++.
T Consensus 350 ~l~~-~gi~v~~g~~~~~~~~~-~~g--------------------~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 404 (406)
T 1kmj_A 350 FLDN-YGIAVRTGHHCAMPLMA-YYN--------------------VPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 404 (406)
T ss_dssp HHHH-TTEECEEECTTCHHHHH-HTT--------------------CSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHhh-CCcEEEeccccchHHHH-hcC--------------------CCCeEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 8865 59999999888743211 111 1489999999999999999999999998764
|
| >4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-37 Score=328.62 Aligned_cols=371 Identities=22% Similarity=0.291 Sum_probs=284.2
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
++|+|+++.++.++.|.+++.+.+...++|+++ .+..+........++++++++++|++++ +|++| +|+++++..++
T Consensus 1 ~~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a~~~~~ 77 (382)
T 4eb5_A 1 MAYFDYTSAKPVDERILEAMLPYMTESFGNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGG-TVVFT-SGATEANNLAI 77 (382)
T ss_dssp -CBCBTTTCCCCCHHHHHHHHHHHHTSCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTE-EEEEE-SSHHHHHHHHH
T ss_pred CeeeccCCCCCCCHHHHHHHHHHHHhccCCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCC-eEEEc-CchHHHHHHHH
Confidence 379999999999999999999988877778776 3455666778899999999999999765 89998 67777888887
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH---cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ---SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
.++... ..++|| .|+++..+|+++...++. .|++++.+++++++.+|+++|+++++ +++
T Consensus 78 ~~l~~~-----------~~~~gd--~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~ 139 (382)
T 4eb5_A 78 IGYAMR-----------NARKGK--HILVSAVEHMSVINPAKFLQKQGFEVEYIPVGKYGEVDVSFIDQKLR-----DDT 139 (382)
T ss_dssp HHHHHH-----------HGGGCC--EEEEETTCCHHHHHHHHHHTTTTCEEEEECBCTTSCBCHHHHHHHCC-----TTE
T ss_pred HHHHhh-----------ccCCCC--EEEECCCcchHHHHHHHHHHhCCcEEEEeccCCCCccCHHHHHHHhc-----CCC
Confidence 765200 015788 799999999998877754 69999999998888899999999998 579
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
+++++++++||||.+.|+++|.++|++||++ |+|++++.+..++++... +.|++++|+||++| |.|+|+++++++
T Consensus 140 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~-i~D~a~~~g~~~~~~~~~---~~di~~~s~sK~~g-~~g~G~~~~~~~ 214 (382)
T 4eb5_A 140 ILVSVQHANNEIGTIQPVEEISEVLAGKAAL-HIDATASVGQIEVDVEKI---GADMLTISSNDIYG-PKGVGALWIRKE 214 (382)
T ss_dssp EEEECCSBCTTTCBBCCHHHHHHHHTTSSEE-EEECTTTBTTBCCCHHHH---TCSEEEEETGGGTC-CSSCEEEEEETT
T ss_pred eEEEEeccCCCccccCCHHHHHHHHHHCCCE-EEEcchhcCCcccCcccc---CCCEEEeehHHhcC-CCceEEEEEccc
Confidence 9999999999999999999999999999999 999999987666555433 67999999999855 778999999887
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERAL 392 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~ 392 (609)
. .+.+...+++. ..+...++++..... .+++.++ +. +.+.+.++.+++++++.
T Consensus 215 ~----~l~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~al~~~--~~-~~~~~~~~~~~~~~~l~ 269 (382)
T 4eb5_A 215 A----KLQPVILGGGQ------------------ENGLRSGSENVPSIVGFGKAAEIT--AM-EWREEAERLRRLRDRII 269 (382)
T ss_dssp C----CCCCSSCSSCT------------------GGGTSCSCCCHHHHHHHHHHHHHH--HH-HHHHHHHHHHHHHHHHH
T ss_pred c----ccCceecCCCc------------------cccccCCCccHHHHHHHHHHHHHH--HH-hHHHHHHHHHHHHHHHH
Confidence 4 23333333322 233445676655543 3344443 22 57788899999999999
Q ss_pred HHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh---hh
Q 038499 393 ERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY---GH 469 (609)
Q Consensus 393 ~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~---~~ 469 (609)
+.|+++|+++++.+......++++|.+.+ .+..++.+.|.+ .||.+++|..|.... .+
T Consensus 270 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~~ 330 (382)
T 4eb5_A 270 DNVLKIEESYLNGHPEKRLPNNVNVRFSY------------------IEGESIVLSLDM-AGIQASTGSACSSKTLQPSH 330 (382)
T ss_dssp HHHTTSTTEEECSCSSSBCTTEEEEEETT------------------SCHHHHHHHHHH-HTCBCBCCCGGGTSSCCCCH
T ss_pred HHHhhCCCeEEeCCcccCCCCEEEEEeCC------------------cCHHHHHHHHHH-CCEEEeccccccCCCCcccH
Confidence 99999999998876321124466666543 357788888865 699999998876321 01
Q ss_pred hh--cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccCCCc
Q 038499 470 HL--LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYN 533 (609)
Q Consensus 470 ~l--l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~p~y~ 533 (609)
.+ ++.++.. .++++||+++.+++++|+++++++|+++++...++.+.|.
T Consensus 331 ~~~~~g~~~~~---------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~~ 381 (382)
T 4eb5_A 331 VLMACGLKHEE---------------AHGTLLLTLGRYNTDEDVDRLLEVLPGVIERLRSMSPLYR 381 (382)
T ss_dssp HHHHTTCCHHH---------------HTTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHTCTTC-
T ss_pred HHHHcCCChhc---------------cCCeEEEECCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence 11 1111100 1589999999999999999999999999988887777774
|
| >1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-36 Score=322.88 Aligned_cols=399 Identities=24% Similarity=0.332 Sum_probs=300.3
Q ss_pred HHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHH
Q 038499 52 EKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIK 131 (609)
Q Consensus 52 ~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia 131 (609)
+..++.+|+.|+..... +..++++|||++..++.|+.|.+++.+.+.....|++...+..+........++++.++
T Consensus 7 ~~~~~~~r~~f~~~~~~----~~g~~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~y~~~~~~~~~~l~~~la 82 (420)
T 1t3i_A 7 PSLAATVRQDFPILNQE----INGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVA 82 (420)
T ss_dssp CCHHHHHGGGCGGGSCE----ETTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhCCccccc----cCCCceEEecCCccCCCCHHHHHHHHHHHHhccCCCCcccchHHHHHHHHHHHHHHHHH
Confidence 34568899999865421 11235899999999998999999999988776667765333344444677899999999
Q ss_pred HHhCC-CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH----HHHcCceEE
Q 038499 132 KCLGG-GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS----WRQSLAEVV 206 (609)
Q Consensus 132 ~~~g~-~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~----~~~~G~~vv 206 (609)
+++|. +++ +|++| +|+++++..++.++.. ..+++|| .|+++.++|++...+ .+..|++++
T Consensus 83 ~~~~~~~~~-~v~~~-~g~t~a~~~~~~~~~~-----------~~~~~gd--~Vl~~~~~~~~~~~~~~~~~~~~g~~~~ 147 (420)
T 1t3i_A 83 KFINARSPR-EIVYT-RNATEAINLVAYSWGM-----------NNLKAGD--EIITTVMEHHSNLVPWQMVAAKTGAVLK 147 (420)
T ss_dssp HHTTCSCGG-GEEEE-SSHHHHHHHHHHHTHH-----------HHCCTTC--EEEEETTCCGGGTHHHHHHHHHHCCEEE
T ss_pred HHcCCCCCC-eEEEc-CChHHHHHHHHHHhhh-----------cccCCCC--EEEECcchhHHHHHHHHHHHHhcCcEEE
Confidence 99999 555 89999 6777788888877620 0036788 699999999996533 346799999
Q ss_pred EEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCC
Q 038499 207 EIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQT 286 (609)
Q Consensus 207 ~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~ 286 (609)
.++.+.++.+|+++|+++++ +++++|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++...
T Consensus 148 ~v~~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~-- 220 (420)
T 1t3i_A 148 FVQLDEQESFDLEHFKTLLS-----EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI-- 220 (420)
T ss_dssp EECBCTTSSBCHHHHHHHCC-----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH--
T ss_pred EeccCCCCCcCHHHHHHhhC-----CCceEEEEeCCcccccCcCCHHHHHHHHHHcCCEEEEEhhhccCCccCchhhc--
Confidence 99998888899999999998 57999999999999999999999999999999999999999988766555443
Q ss_pred CCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHH-
Q 038499 287 DGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRA- 365 (609)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~a- 365 (609)
+.|++++|+||.+| |.|+|++++++++ ++.+.+...+|+....... ....+...+.+++.|++++.+.+..
T Consensus 221 -~~di~~~s~sK~~~-~~g~G~~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~a~~ 292 (420)
T 1t3i_A 221 -DCDWLVASGHKMCA-PTGIGFLYGKEEI--LEAMPPFFGGGEMIAEVFF----DHFTTGELPHKFEAGTPAIAEAIALG 292 (420)
T ss_dssp -TCSEEEEEGGGTTS-CTTCEEEEECHHH--HHHSCCCSCSTTSEEEECS----SCEEECCTTGGGCCSSCCHHHHHHHH
T ss_pred -CCCEEEEehhhhcC-CCceEEEEEchHH--HhhcCceecCCCccccccc----cccCCCCchhhccCCCccHHHHHHHH
Confidence 67999999999765 6669999999988 4456566555554433210 1111223345566788887776543
Q ss_pred -HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCC--CCcceEEEEeccCCCCCcCCCCCCCCCCCCCCh
Q 038499 366 -ALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTST--KRQAILSFNIHSSTINSSLGENTKTETDKPLHG 442 (609)
Q Consensus 366 -al~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~--~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (609)
++.++ +..+.+.+.++.+++++++.+.|+++|+++++.+... .+.++++|.+.. .+.
T Consensus 293 ~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~------------------~~~ 352 (420)
T 1t3i_A 293 AAVDYL--TDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG------------------LHA 352 (420)
T ss_dssp HHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT------------------BCH
T ss_pred HHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccccCCEEEEEECC------------------CCH
Confidence 34443 3457888999999999999999999999999876310 146777776533 356
Q ss_pred HHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 443 PFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 443 ~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
..+.+.|.+ .||.+++|..|..+.... .+ .++++||+++.+++++|+++++++|++++
T Consensus 353 ~~~~~~l~~-~gi~v~~~~~~~~~~~~~-~g--------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~~ 410 (420)
T 1t3i_A 353 SDVATMVDQ-DGIAIRSGHHCTQPLHRL-FD--------------------ASGSARASLYFYNTKEEIDLFLQSLQATI 410 (420)
T ss_dssp HHHHHHHHT-TTEECBCSCTTCHHHHHH-TT--------------------CCCCEEEECCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCeEEeeccccchHHHHh-cC--------------------CCCeEEEecCCCCCHHHHHHHHHHHHHHH
Confidence 788888865 699999998887432111 11 14899999999999999999999999998
Q ss_pred Hhcc
Q 038499 523 IYGQ 526 (609)
Q Consensus 523 ~~~~ 526 (609)
+...
T Consensus 411 ~~~~ 414 (420)
T 1t3i_A 411 RFFS 414 (420)
T ss_dssp HHTC
T ss_pred HHhc
Confidence 7654
|
| >3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-37 Score=328.25 Aligned_cols=369 Identities=16% Similarity=0.197 Sum_probs=285.6
Q ss_pred HHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 038499 55 LTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL 134 (609)
Q Consensus 55 ~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~ 134 (609)
++.+|++||..+ +..+|||+++.++.++.|.+++.+.+...+.|++. .+..+........++++.+++++
T Consensus 13 ~~~~r~~fp~~~---------~~~~~ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~ 82 (406)
T 3cai_A 13 VARVRGLHPSLG---------DGWVHFDAPAGMLIPDSVATTVSTAFRRSGASTVG-AHPSARRSAAVLDAAREAVADLV 82 (406)
T ss_dssp HHHHHHTCTTTT---------SSCEECBGGGCCCCCHHHHHHHHHHHHHCCSSSCS-SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhcC---------CCeEEEeCCCcCCCCHHHHHHHHHHHHhcCCCCCC-ccHHHHHHHHHHHHHHHHHHHHh
Confidence 468999998654 24899999999999999999999888766667653 24455566788999999999999
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH----cCceEEEEec
Q 038499 135 GGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ----SLAEVVEIGL 210 (609)
Q Consensus 135 g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~ 210 (609)
|++++ +|+|| +|+++++..++.++.. .+++|| .|+++..+|+++..+|.. .|++++.++.
T Consensus 83 g~~~~-~v~~~-~g~t~al~~~~~~l~~------------~~~~gd--~vi~~~~~~~~~~~~~~~~~~~~g~~v~~v~~ 146 (406)
T 3cai_A 83 NADPG-GVVLG-ADRAVLLSLLAEASSS------------RAGLGY--EVIVSRLDDEANIAPWLRAAHRYGAKVKWAEV 146 (406)
T ss_dssp TCCGG-GEEEE-SCHHHHHHHHHHHTGG------------GGBTTC--EEEEETTSCGGGTHHHHHHHHHHBCEEEEECC
T ss_pred CCCCC-eEEEe-CChHHHHHHHHHHHhh------------ccCCCC--EEEEcCCccHHHHHHHHHHHHhcCCeEEEEec
Confidence 99766 89998 7777889988776510 146888 699999999998877765 6999999999
Q ss_pred C-CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCc
Q 038499 211 D-DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGY 289 (609)
Q Consensus 211 ~-~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~ 289 (609)
+ +++.+|+++|+++++ ++++++++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... +.
T Consensus 147 ~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~ 218 (406)
T 3cai_A 147 DIETGELPTWQWESLIS-----KSTRLVAVNSASGTLGGVTDLRAMTKLVHDVGALVVVDHSAAAPYRLLDIRET---DA 218 (406)
T ss_dssp CTTTCCCCGGGHHHHCC-----TTEEEEEEESBCTTTCBBCCCHHHHHHHHHTTCEEEEECTTTTTTCCCCHHHH---CC
T ss_pred CcccCCcCHHHHHHHhC-----CCceEEEEeCCcCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCCCchhc---CC
Confidence 8 678899999999997 58999999999999999999999999999999999999999988776665443 68
Q ss_pred cEEEEcCCCCCCCCCCcE-EEEEechhhccCCCCCCcc--CCCceEeecccccccccccccccccccCCChhHHHHH--H
Q 038499 290 DAIFLSTHKFLGGPGSPG-ILLMTKALYQLGSFPPSTC--GGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--R 364 (609)
Q Consensus 290 D~v~~S~hK~lggp~g~G-~L~~~~~~~~l~~~~p~~~--ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~ 364 (609)
|++++|+||++| |. +| ++++++++ ++.+.+... |++ ...+++.||++..+.. .
T Consensus 219 d~~~~s~~K~~g-~~-~G~~~~~~~~~--~~~l~~~~~~~~~~------------------~~~~~~~~t~~~~~~~a~~ 276 (406)
T 3cai_A 219 DVVTVNAHAWGG-PP-IGAMVFRDPSV--MNSFGSVSTNPYAT------------------GPARLEIGVHQFGLLAGVV 276 (406)
T ss_dssp SEEEEEGGGGTS-CS-CEEEEESCHHH--HHTSCCCCSCTTCC------------------GGGGGCCSCCCHHHHHHHH
T ss_pred CEEEeehhhhcC-CC-cCeEEEEehHH--HhhcCCcccCCCCC------------------ccccccCCCccHHHHHHHH
Confidence 999999999886 66 78 99999887 445544321 111 1345567888776654 3
Q ss_pred HHHHHHHHHhcC--------------HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCC
Q 038499 365 AALAFWVKEYIG--------------HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGE 430 (609)
Q Consensus 365 aal~~~~~~~~g--------------~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~ 430 (609)
+++.+. +..| .+.+.++.+++++++.+.|+++|+++++.+. ..+.++++|.+..
T Consensus 277 ~al~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~~~~~~~~--------- 344 (406)
T 3cai_A 277 ASIEYL--AALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRP-EAQIPVVSFAVHK--------- 344 (406)
T ss_dssp HHHHHH--HTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCC-SSBCSEEEEEETT---------
T ss_pred HHHHHH--HHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCc-cccCCEEEEEECC---------
Confidence 344443 3434 6788899999999999999999999988763 2356777776643
Q ss_pred CCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHH
Q 038499 431 NTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEE 510 (609)
Q Consensus 431 ~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ee 510 (609)
.+...+.+.|.+ .||.+++|+. +......+... ..+++||+++.++|++|
T Consensus 345 ---------~~~~~~~~~L~~-~gi~v~~g~~---~~~~~~~g~~~-----------------~~~~iRis~~~~~t~e~ 394 (406)
T 3cai_A 345 ---------VPADRVVQRLAD-NGILAIANTG---SRVLDVLGVND-----------------VGGAVTVGLAHYSTMAE 394 (406)
T ss_dssp ---------BCHHHHHHHHHH-TTEECEECCS---CHHHHHHTTTT-----------------TTCCEEEECCTTCCHHH
T ss_pred ---------cCHHHHHHHHHH-CCcEEecCCh---HHHHHHcCCCC-----------------CCCeEEEEeecCCCHHH
Confidence 357788888865 6999998761 11111111110 14799999999999999
Q ss_pred HHHHHHHHHHH
Q 038499 511 FEFTLEALEFI 521 (609)
Q Consensus 511 id~ll~al~~v 521 (609)
+++++++|+++
T Consensus 395 i~~~~~~l~~~ 405 (406)
T 3cai_A 395 VDQLVRALASL 405 (406)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHHh
Confidence 99999999754
|
| >1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-35 Score=307.44 Aligned_cols=364 Identities=21% Similarity=0.291 Sum_probs=269.5
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
+|||+++.++.++.|.+++.+.+...|++++. .+..++.......++++.+++++|++++ +|+++ +|+++++..++.
T Consensus 3 ~yld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a~~~~~~ 79 (384)
T 1eg5_A 3 VYFDNNATTRVDDRVLEEMIVFYREKYGNPNS-AHGMGIEANLHMEKAREKVAKVLGVSPS-EIFFT-SCATESINWILK 79 (384)
T ss_dssp EECBTTTCCCCCHHHHHHHHHHHHTCCCCTTC-SSHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEE-SCHHHHHHHHHH
T ss_pred EEEecCccCCCCHHHHHHHHHHHHhcCCCCcc-ccHHHHHHHHHHHHHHHHHHHHcCCCCC-eEEEE-CCHHHHHHHHHH
Confidence 89999999999999999999998877777765 3456677788899999999999998876 89998 677778888887
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH---HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++... .+++|| .|+++..+|+++...+ +..|++++.++.++++.+|+++|+++++ ++++
T Consensus 80 ~~~~~-----------~~~~gd--~vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~~ 141 (384)
T 1eg5_A 80 TVAET-----------FEKRKR--TIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD-----EDTF 141 (384)
T ss_dssp HHHHH-----------TTTTCC--EEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC-----TTEE
T ss_pred hhhhh-----------ccCCCC--EEEECCCCchHHHHHHHHHHhcCCEEEEEccCCCCccCHHHHHHHhC-----CCCe
Confidence 76300 015788 6999999999987766 6679999999998888899999999998 5799
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhC--CeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEec
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYG--GFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTK 313 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g--~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~ 313 (609)
++++++++||||.+.|+++|.++|++|| +++|+|++++.+..++++... +.|++++|+||++| |.|+|++++++
T Consensus 142 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~li~Dea~~~~~~~~~~~~~---~~di~~~s~sK~~g-~~G~G~~~~~~ 217 (384)
T 1eg5_A 142 LVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKL---EVDYASFSAHKFHG-PKGVGITYIRK 217 (384)
T ss_dssp EEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTT---CCSEEEEEGGGGTS-CTTCEEEEECT
T ss_pred EEEEECCCCCcccccCHHHHHHHHHhcCCceEEEEEhhhhcCCcccCchhc---CCCEEEecHHHhcC-CCceEEEEEcC
Confidence 9999999999999999999999999999 999999999877666666543 68999999999976 66689999988
Q ss_pred hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 314 ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
++ .+.+...+++. ..+...++++..... .+++... ..+.+.+.++.+++++++
T Consensus 218 ~~----~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~al~~~---~~~~~~~~~~~~~~~~~l 272 (384)
T 1eg5_A 218 GV----PIRPLIHGGGQ------------------ERGLRSGTQNVPGIVGAARAMEIA---VEELSEAAKHMEKLRSKL 272 (384)
T ss_dssp TS----CCCCSBCSSCT------------------TTTTBCSCCCHHHHHHHHHHHHHH---HHTHHHHHHHHHHHHHHH
T ss_pred CC----ccccccccCcc------------------cccccCCCCChHHHHHHHHHHHHH---HHhHHHHHHHHHHHHHHH
Confidence 75 22232222211 112234555554433 2333332 235788889999999999
Q ss_pred HHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh---h
Q 038499 392 LERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY---G 468 (609)
Q Consensus 392 ~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~---~ 468 (609)
.+.|++ +++++..+.......++.|.+.. .+...+.+.|.+ .||.+++|..|..+. .
T Consensus 273 ~~~L~~-~g~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~-~gi~v~~g~~~~~~~~~~~ 332 (384)
T 1eg5_A 273 VSGLMN-LGAHIITPLEISLPNTLSVSFPN------------------IRGSTLQNLLSG-YGIYVSTSSACTSKDERLR 332 (384)
T ss_dssp HHHHHT-TTCEECSCTTSBCTTEEEEECTT------------------CCHHHHHHHHHH-TTEECBC------------
T ss_pred HHHhCC-CCeEEeCCcccCCCCEEEEEeCC------------------CCHHHHHHHHhh-CCeEEeccccccCCCCcch
Confidence 999988 68988765321123455565443 357788888864 699999998775320 1
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+.+..++.+... .++++||++++++|++|+++++++|+++++..
T Consensus 333 ~~~~~~g~~~~~-------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 376 (384)
T 1eg5_A 333 HVLDAMGVDRRI-------------AQGAIRISLCKYNTEEEVDYFLKKIEEILSFL 376 (384)
T ss_dssp CHHHHTTCCHHH-------------HHHEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCChhh-------------cCCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 111111100000 13799999999999999999999999998764
|
| >3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=319.20 Aligned_cols=351 Identities=13% Similarity=0.047 Sum_probs=265.5
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCC--CchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTC--DSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~--~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
+--+|.+++++.|+.|.+++.+.+..+++|+.+. .+..+....+.++++|+.+++++|++++++|+|+.+|+|+++++
T Consensus 13 ~~~~n~at~~~~p~~Vl~a~~~~~~~~~~n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 92 (377)
T 3e77_A 13 LGTENLYFQSMLPHSVLLEIQKELLDYKGVGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSA 92 (377)
T ss_dssp --CCCEECSCCCCHHHHHHHHHTSSSGGGSSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHH
T ss_pred cccccccccCCCCHHHHHHHHHHHHhcccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHH
Confidence 3357888999999999999999999888877553 13467778999999999999999997645899954677778998
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH--HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCC
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL--SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~ 233 (609)
++..+-. -++|| .|++...+|+++.. .++..|++++.++.+.++.+++++++.+++ ++
T Consensus 93 a~~~l~~-------------~~~Gd--~v~~~~~g~~~~~~~~~a~~~G~~~~~~~~~~~~~~~~~~~~~~i~-----~~ 152 (377)
T 3e77_A 93 VPLNLIG-------------LKAGR--CADYVVTGAWSAKAAEEAKKFGTINIVHPKLGSYTKIPDPSTWNLN-----PD 152 (377)
T ss_dssp HHHHHGG-------------GSTTC--EEEECCCSHHHHHHHHHHTTTSEEEECSCCCSSSCSCCCGGGCCCC-----TT
T ss_pred HHHhccC-------------CCCCC--eEEEEECCHHHHHHHHHHHHhCCceEEeccCCCcCCCCChHHhccC-----CC
Confidence 8776520 02377 57777777777531 123458888888887666677777766665 68
Q ss_pred ceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEec
Q 038499 234 PILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTK 313 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~ 313 (609)
|++|++++.+|.||++.|+ +|+++|+++++|++|++|+.++|+..+ |++++|+|||+| |.|+|+|++++
T Consensus 153 t~lV~~~h~et~tG~~~pi-----i~~~~~~~~~vD~~q~~g~~~id~~~~-----~~~~~s~~K~~g-p~G~g~l~~~~ 221 (377)
T 3e77_A 153 ASYVYYCANETVHGVEFDF-----IPDVKGAVLVCDMSSNFLSKPVDVSKF-----GVIFAGAQKNVG-SAGVTVVIVRD 221 (377)
T ss_dssp CSCEEEESEETTTTEECSS-----CCCCTTCCEEEECTTTTTSSCCCGGGC-----SEEEEEGGGTTS-CTTCEEEEEET
T ss_pred ccEEEEeCccCchheEchh-----hhccCCCEEEEEcccccCCCCCchhhc-----CEEEEecccccC-CCccEEEEEcH
Confidence 9999999999999999998 477899999999999999999999875 578999999995 99999999999
Q ss_pred hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Q 038499 314 ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYI-GHEVIKKQEETYIERAL 392 (609)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~-g~~~i~~~~~~l~~~~~ 392 (609)
++ ++.+.|..+. . ..|....+...+.+||++.+++....++...... |++.+.+++++++++++
T Consensus 222 ~~--l~~~~~~~p~--~-----------~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~ 286 (377)
T 3e77_A 222 DL--LGFALRECPS--V-----------LEYKVQAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIY 286 (377)
T ss_dssp TS--CSCCCTTSCG--G-----------GCHHHHHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HH--HhhccCCCCc--h-----------hhHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 99 6666554321 1 0011111233457899988876544343333556 79999999999999999
Q ss_pred HHhCCCCceEEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCCh-----HHHHHHHhhhcCcEeccCcccCCh
Q 038499 393 ERLLPNQNIKILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHG-----PFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 393 ~~L~~~p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~-----~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
+.|+++|++.+.......|++ +++|.+.. +++ ..+.+.|. .+||.+++|..
T Consensus 287 ~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~------------------~~~~~~~~~~~l~~l~-~~Gi~~~~g~~---- 343 (377)
T 3e77_A 287 EIIDNSQGFYVCPVEPQNRSKMNIPFRIGN------------------AKGDDALEKRFLDKAL-ELNMLSLKGHR---- 343 (377)
T ss_dssp HHHHTSTTSEECCSCGGGBCSSEEEEEESS------------------TTCCHHHHHHHHHHHH-HTTEESCBCCT----
T ss_pred HHHHhcCCceecCCCHHHcCCcEEEEEcCC------------------CCCchhHHHHHHHHHH-HCCcEEeCCCC----
Confidence 999999999875432234666 58888875 232 24555554 46999886631
Q ss_pred hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 467 ~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..+.+|+|+++++|++||++++++|++++++
T Consensus 344 ---------------------------~~g~iRiS~~~~~t~edId~l~~al~~~~~~ 374 (377)
T 3e77_A 344 ---------------------------SVGGIRASLYNAVTIEDVQKLAAFMKKFLEM 374 (377)
T ss_dssp ---------------------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------cCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 1367999999999999999999999998865
|
| >3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=319.88 Aligned_cols=368 Identities=20% Similarity=0.231 Sum_probs=261.8
Q ss_pred CCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 72 PFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 72 p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
|+.....+|||+++.++.++.+.+++.+.+...++|++. .+..+....+.++++++++++++|++++ +|++| +|+++
T Consensus 15 ~~~~~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~-~v~~~-~g~t~ 91 (400)
T 3vax_A 15 VPRGSHMTYLDAAATTRVDQRVADIVLHWMTAEFGNAGS-RHEYGIRAKRGVERAREYLASTVSAEPD-ELIFT-SGATE 91 (400)
T ss_dssp -------CCCCCCCCSSSCHHHHHHHHHHHHHHHSCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGG-GEEEE-SCHHH
T ss_pred CcccCCcEEecCCCCCCCCHHHHHHHHHHHHhccCCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCC-cEEEe-CCHHH
Confidence 333457899999999999999999999988877778776 3455666778899999999999999876 89998 77777
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH---cCceEEEEecCCCCCCCHHHHHHHHhhh
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ---SLAEVVEIGLDDDGLLDIEALRSKLELY 228 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~g~ld~e~L~~al~~~ 228 (609)
++..++.++... ..++||. .|+++..+|+++...++. .|++++.++.++++.+|+++|+++++
T Consensus 92 al~~~~~~l~~~-----------~~~~gd~-~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-- 157 (400)
T 3vax_A 92 SNNIALLGLAPY-----------GERTGRR-HIITSAIEHKAVLEPLEHLAGRGFEVDFLTPGPSGRISVEGVMERLR-- 157 (400)
T ss_dssp HHHHHHHTTHHH-----------HHHHTCC-EEEEETTSCHHHHHHHHHHHTTTCEEEEECCCTTCCCCHHHHHTTCC--
T ss_pred HHHHHHHHHHHh-----------hccCCCC-EEEECccccHhHHHHHHHHHhcCCeEEEEccCCCCCcCHHHHHHhcC--
Confidence 888887765100 0146761 489999999998877765 59999999999899999999999998
Q ss_pred ccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEE
Q 038499 229 KDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGI 308 (609)
Q Consensus 229 ~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (609)
++++++++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... +|++++|+||++ ||.|+|+
T Consensus 158 ---~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~~~li~D~a~~~~~~~~~~~~~----~d~~~~s~~K~~-g~~g~g~ 229 (400)
T 3vax_A 158 ---PDTLLVSLMHVNNETGVIQPVAELAQQLRATPTYLHVDAAQGYGKVPGDLTTP----IDMISISGHKIG-APKGVGA 229 (400)
T ss_dssp ---TTEEEEECCSBCTTTCBBCCHHHHHHHHTTSSCEEEEECTTTTTTSGGGGGSC----CSEEEEETGGGT-SCSSCEE
T ss_pred ---CCceEEEEECCCCCceeeCcHHHHHHHHHhcCCEEEEEhhhhcCCCCcChhhc----CcEEEEeHHHhC-CCCceEE
Confidence 68999999999999999999999999999999999999999988877776542 799999999965 4778999
Q ss_pred EE-Eechhhcc---CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH--HHHHHHHHHhcCHHHHHH
Q 038499 309 LL-MTKALYQL---GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR--AALAFWVKEYIGHEVIKK 382 (609)
Q Consensus 309 L~-~~~~~~~l---~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~--aal~~~~~~~~g~~~i~~ 382 (609)
++ ++++.. + ..+.+...++.. ..+...++++..+... +++.+. + .+.+.+.+
T Consensus 230 ~~~~~~~~~-~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~al~~~--~-~~~~~~~~ 287 (400)
T 3vax_A 230 LVTRRREEM-DDERVPLEPIMFGGGQ------------------ERKLRPGTLPVPLIMGLAEAAKIF--E-AEHAQWQV 287 (400)
T ss_dssp EEECBCSSS-TTCBCCCCCSSCSSCT------------------GGGTSCSCCCHHHHHHHHHHHHHH--H-HSHHHHHH
T ss_pred EEEecchhc-cccccccCceecCCCc------------------eeeeecCCCCHHHHHHHHHHHHHH--H-hhHHHHHH
Confidence 99 888321 1 133444433332 3445567777666543 333332 2 36788999
Q ss_pred HHHHHHHHHHHHhCCCCceEEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCc
Q 038499 383 QEETYIERALERLLPNQNIKILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGC 461 (609)
Q Consensus 383 ~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~ 461 (609)
+.+++++++.+.|+ .+++++..+.. .+.+ ++.|.+.. .+...+.+.|. .||.+++|.
T Consensus 288 ~~~~~~~~l~~~L~-~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~l~~~L~--~gi~v~~g~ 345 (400)
T 3vax_A 288 AAQDLRSRLLAGLA-STSFQVNGDQD-HVVPHILNLSFED------------------VDAEAFLVTLK--DLVAVATGS 345 (400)
T ss_dssp HHHHHHHHHHHHHT-TTTCEECSCTT-SBCTTEEEEECTT------------------CCHHHHHHHHH--HHHHHTTTT
T ss_pred HHHHHHHHHHHhhC-CCCEEEeCCcc-cCCCCEEEEEeCC------------------CCHHHHHHHHh--cCcEEEecc
Confidence 99999999999999 88999987643 2333 56665543 46788999986 699999998
Q ss_pred ccCCh---hhhhh--cCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHH
Q 038499 462 ACAGP---YGHHL--LDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 462 ~ca~p---~~~~l--l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~eeid~ll~al~~v~~ 523 (609)
.|... ..+.+ +++.+.. .++++||++ +.++|++|+++++++|+++++
T Consensus 346 ~~~~~~~~~~~~~~~~g~~~~~---------------~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~ 398 (400)
T 3vax_A 346 ASTSASFTPSHVLRAMGLPEEA---------------ASKSLRFSWTPGQATDLDVEELARGVAKLKP 398 (400)
T ss_dssp EEEEEEECCHHHHHTTTCCHHH---------------HTSEEEEEEEEC-------------------
T ss_pred cccCCCCCccHHHHHcCCCccc---------------cCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence 88742 11112 2222111 158999999 999999999999999998765
|
| >3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-36 Score=329.42 Aligned_cols=393 Identities=14% Similarity=0.114 Sum_probs=286.9
Q ss_pred HHHHHhhccCCCcc------ccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhh-HHHHHHHHHHH
Q 038499 55 LTWLQSQIIGKNAE------FDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVG-QHTTNMVHEAS 127 (609)
Q Consensus 55 ~~~~r~~~~g~~~~------~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~-~~~~~~~~e~r 127 (609)
+..+|+.|+..... .....+.++.+|||+++.|+.|+.+.+++.+.+. .|++.....+..+ ..+....++++
T Consensus 39 l~~~r~~f~~~~~~~~~~~~~~~~~~~~~~iyld~~~~g~~p~~v~~~i~~~l~-~~~~~~~~~~~~~~~~~~~~~~~l~ 117 (465)
T 3e9k_A 39 LRHFRECFYIPKIQDLPPVDLSLVNKDENAIYFLGNSLGLQPKMVKTYLEEELD-KWAKIAAYGHEVGKRPWITGDESIV 117 (465)
T ss_dssp TGGGGGGEECCBGGGSTTCCGGGSCTTCBCEECBTTTSCCEETTHHHHHHHHHH-HHHHHGGGGGTSSSSCGGGTTHHHH
T ss_pred HHHHHHhcCCCCcccccccccccccCCCCeEEecCCccCCChHHHHHHHHHHHH-HHHhhCCcccccCCccHHHhHHHHH
Confidence 55788888743200 0001123478999999999999989888877663 3332221101111 11234557789
Q ss_pred HHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCC-ceEEEECCCCccchHHHHH----HcC
Q 038499 128 NYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE-RWVVFVGPHEHHSNLLSWR----QSL 202 (609)
Q Consensus 128 ~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd-~~~Vlv~~~~h~s~~~~~~----~~G 202 (609)
+++++++|++++ +|+|+ +|++++++.++.++. ++++ +..|+++..+|+++..+|. ..|
T Consensus 118 ~~la~~~g~~~~-~v~~t-~g~t~al~~~~~~~~---------------~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G 180 (465)
T 3e9k_A 118 GLMKDIVGANEK-EIALM-NALTVNLHLLMLSFF---------------KPTPKRYKILLEAKAFPSDHYAIESQLQLHG 180 (465)
T ss_dssp GGGHHHHTCCGG-GEEEC-SCHHHHHHHHHHHHC---------------CCCSSSCEEEEETTCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCCcC-CEEEE-CCHHHHHHHHHHHhc---------------cccCCCCEEEEcCCcCCchHHHHHHHHHHcC
Confidence 999999999876 89998 788889999888773 3443 2369999999999776554 468
Q ss_pred ceE-----EEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc
Q 038499 203 AEV-----VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV 277 (609)
Q Consensus 203 ~~v-----v~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~ 277 (609)
+++ ..++.+.++.+|+++|+++|+++. ++++++++++++|+||.+.|+++|.++||+||+++++|++|+.|..
T Consensus 181 ~~~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~--~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~ 258 (465)
T 3e9k_A 181 LNIEESMRMIKPREGEETLRIEDILEVIEKEG--DSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNV 258 (465)
T ss_dssp CCHHHHEEEECCCTTCSSCCHHHHHHHHHHHG--GGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTS
T ss_pred CcceeeeEEEecCCCCCccCHHHHHHHHHhcC--CCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCc
Confidence 774 344666678899999999997421 4789999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCccEEEEcCCCCC-CCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 278 EIDVRSGQTDGYDAIFLSTHKFL-GGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 278 ~id~~~~~~~~~D~v~~S~hK~l-ggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
++++..+ ++|++++|+||++ +||.|+|++++++++ ++.+.+...|+........|.......+.....+++.||
T Consensus 259 ~~~~~~~---~~D~~~~s~~K~l~~gp~~~g~l~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt 333 (465)
T 3e9k_A 259 ELYLHDW---GVDFACWCSYKYLNAGAGGIAGAFIHEKH--AHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISN 333 (465)
T ss_dssp CCCHHHH---TCCEEEECSSSTTCCCTTCCCEEEECGGG--TTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSC
T ss_pred CCchhhc---CCCEEEECcccccccCCCceEEEEEcHHH--HhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCC
Confidence 8887765 7899999999999 578889999999998 556666655532211011111111112233457788999
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----------CceEEeCCCC-CCCcceEEEEeccCCCC
Q 038499 357 PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN----------QNIKILGNTS-TKRQAILSFNIHSSTIN 425 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----------p~i~v~~~~~-~~r~~~~~f~~~~~~~~ 425 (609)
+++.+++....++...+..|++.+.++.+++++++.+.|+++ ++++++.+.+ ..+.++++|.+..
T Consensus 334 ~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~---- 409 (465)
T 3e9k_A 334 PPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV---- 409 (465)
T ss_dssp CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC----
T ss_pred ccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC----
Confidence 998877644333333355689999999999999999999875 7999998743 2357788886653
Q ss_pred CcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CC
Q 038499 426 SSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PY 504 (609)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~ 504 (609)
+...+.+.|.+ .||.++.+ .++++|+|+ +.
T Consensus 410 ---------------~~~~l~~~L~~-~Gi~v~~~---------------------------------~~~~iRis~~~~ 440 (465)
T 3e9k_A 410 ---------------PNKDVFQELEK-RGVVCDKR---------------------------------NPNGIRVAPVPL 440 (465)
T ss_dssp ---------------TTCCHHHHHHT-TTEECEEE---------------------------------TTTEEEEBCCTT
T ss_pred ---------------CHHHHHHHHHH-CCEEEecC---------------------------------CCCEEEEeCccc
Confidence 34568888866 49988611 258999999 89
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q 038499 505 YMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 505 ~~t~eeid~ll~al~~v~~~~ 525 (609)
++|++|+++++++|+++++..
T Consensus 441 ~~t~edi~~~~~~l~~~l~~~ 461 (465)
T 3e9k_A 441 YNSFHDVYKFTNLLTSILDSA 461 (465)
T ss_dssp TCCHHHHHHHHHHHHHHHTC-
T ss_pred CCCHHHHHHHHHHHHHHHHhc
Confidence 999999999999999998754
|
| >1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=306.77 Aligned_cols=371 Identities=16% Similarity=0.107 Sum_probs=276.7
Q ss_pred HHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCc-cCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 038499 55 LTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFY-GNTHTCDSYVGQHTTNMVHEASNYIKKC 133 (609)
Q Consensus 55 ~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~-~n~~~~~~~~~~~~~~~~~e~r~~ia~~ 133 (609)
++.+|++|+..+ +.+|+|+++.++.|+.|.+++.+.+.... .++.+ +...........++++.++++
T Consensus 4 ~~~~r~~f~~~~----------~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~--~~~y~~~~~~~~~l~~~la~~ 71 (390)
T 1elu_A 4 ITPSLHQFPGLA----------NKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS--IAANQHIQQLIAQLRQALAET 71 (390)
T ss_dssp ------CCGGGT----------TSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCC----------CeEEecCCccCCCCHHHHHHHHHHHHHHhccCCcc--hhhHHHHHHHHHHHHHHHHHH
Confidence 467888887543 57999999999999999999988775421 12221 111112246788999999999
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH----HHcCceEEEEe
Q 038499 134 LGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIG 209 (609)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~ 209 (609)
+|++++ +|++| +|+++++..++..+. +++|| .|+++..+|+++...| +..|++++.++
T Consensus 72 ~g~~~~-~v~~~-~g~t~a~~~~~~~~~--------------~~~gd--~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~ 133 (390)
T 1elu_A 72 FNVDPN-TITIT-DNVTTGCDIVLWGLD--------------WHQGD--EILLTDCEHPGIIAIVQAIAARFGITYRFFP 133 (390)
T ss_dssp TTSCGG-GEEEE-SSHHHHHHHHHHHSC--------------CCTTC--EEEEETTCCHHHHHHHHHHHHHHCCEEEEEC
T ss_pred cCCCHH-HEEEe-CChHHHHHHHHhCCC--------------CCCCC--EEEEecCcccHHHHHHHHHHHHhCcEEEEEc
Confidence 998776 89998 677778888888763 36788 6999999999987664 45699999999
Q ss_pred cC--CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHH----HhCCeEEEeccccCCcccccCCC
Q 038499 210 LD--DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLH----QYGGFACFDFAASGPYVEIDVRS 283 (609)
Q Consensus 210 ~~--~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~----~~g~~vivD~A~~~~~~~id~~~ 283 (609)
.+ .++.+|+++|+++++ ++++++++++++||||.+.|+++|.++|+ +||+++|+|++++.+..++++..
T Consensus 134 ~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~~~ 208 (390)
T 1elu_A 134 VAATLNQGDAAAVLANHLG-----PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSR 208 (390)
T ss_dssp CGGGSSSSCHHHHHHTTCC-----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTT
T ss_pred CCCCCCccchHHHHHHhcC-----CCceEEEEeccccCCceecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCChhh
Confidence 87 577899999999997 57999999999999999999999999999 99999999999998877776654
Q ss_pred CCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH
Q 038499 284 GQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI 363 (609)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~ 363 (609)
. +.|++++|+|||++||.|+|++++++++ ++.+.+...|++++..... .. ...+.+...++..++++.....
T Consensus 209 ~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~--~~~~~~~~~g~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~ 280 (390)
T 1elu_A 209 L---EVDYYAFTGHKWFAGPAGVGGLYIHGDC--LGEINPTYVGWRSITYGAK--GE-PTGWAEGGKRFEVATSAYPQYA 280 (390)
T ss_dssp S---CCSEEEEESSSTTCCCTTCEEEEECTTT--GGGCCCCSCCTTTEEECTT--SC-EEEECSGGGGGCCSCCCHHHHH
T ss_pred c---CCCEEEccccccccCCCceEEEEECHHh--HhhcCCccccCCccccccc--Cc-ccccccchHhhCCCCCCHHHHH
Confidence 3 6899999999988888889999999988 5566666666665433211 00 0011112245556777765543
Q ss_pred --HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCC
Q 038499 364 --RAALAFWVKEYIG-HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPL 440 (609)
Q Consensus 364 --~aal~~~~~~~~g-~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l 440 (609)
.+++.++ +..+ .+.+.++.+++++++.+.|+++++++++.+. ....++++|.+.. + .
T Consensus 281 a~~~al~~l--~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~-~~~~~~~~~~~~~-~----------------~ 340 (390)
T 1elu_A 281 GLLAALQLH--QRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS-APQAGLVSFTVDS-P----------------L 340 (390)
T ss_dssp HHHHHHHHH--HHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS-CCSSSEEEEEECS-S----------------S
T ss_pred HHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc-cccccEEEEEcCC-C----------------C
Confidence 3344433 2334 8889999999999999999988899988642 2356677775533 1 3
Q ss_pred ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 441 HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 441 ~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
+...+.+.|.+ .||.+++|. .++++||+++++++++|+++++++|++
T Consensus 341 ~~~~~~~~l~~-~gi~v~~~~--------------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~ 387 (390)
T 1elu_A 341 GHRAIVQKLEE-QRIYLRTIA--------------------------------DPDCIRACCHYITDEEEINHLLARLAD 387 (390)
T ss_dssp CHHHHHHHHHH-TTEECEEET--------------------------------TTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHH-CCEEEEecC--------------------------------CCCeEEEecccCCCHHHHHHHHHHHHh
Confidence 57788888865 599998653 047999999999999999999999875
Q ss_pred H
Q 038499 521 I 521 (609)
Q Consensus 521 v 521 (609)
+
T Consensus 388 ~ 388 (390)
T 1elu_A 388 F 388 (390)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-36 Score=322.32 Aligned_cols=347 Identities=14% Similarity=0.093 Sum_probs=240.8
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCC--CchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTC--DSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~--~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
.+|+|+++.++.|+.|.+++.+.+..+++|+.+. .+..+....+.++++|+.+++++|++++++|+|+.+|+|++++.
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ 106 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWHGLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAG 106 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-----------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhccccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 3799999999999999999999888877777652 13456667889999999999999996544799942455667888
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecC--CCCC-CCHHHHHHHHhhhcc
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLD--DDGL-LDIEALRSKLELYKD 230 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~--~~g~-ld~e~L~~al~~~~~ 230 (609)
++..+ +++||+ |++...+|+++. ..++..| +|+.++.+ ++|. +++++++.+++
T Consensus 107 ai~~l---------------~~~gd~--v~~~~~~~~~~~~~~~a~~~G-~v~~v~~~~~~~G~~~~~~~~~~~l~---- 164 (386)
T 3qm2_A 107 VPLNL---------------LGDKTT--ADYVDAGYWAASAIKEAKKYC-APQIIDAKITVDGKRAVKPMREWQLS---- 164 (386)
T ss_dssp HHHHH---------------CTTCCE--EEEEESSHHHHHHHHHHTTTS-EEEEEECEEEETTEEEECCGGGCCCC----
T ss_pred HHHhc---------------cCCCCe--EEEEeCCHHHHHHHHHHHHhC-CeEEEecCcccCCCCCCchHHHhhcC----
Confidence 87655 468884 444444555542 1223468 89999988 5675 78888887777
Q ss_pred CCCceEEEEecccCccccc-cCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEE
Q 038499 231 AKRPILGSFSACSNVTGIY-SDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGIL 309 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~-~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L 309 (609)
++|++|++++++|.||.+ .|+++|+ +|+++++|++|++|+.++|+.++ |++++|+|||+| |.|+|+|
T Consensus 165 -~~t~lV~~~h~et~tG~~i~pi~~i~-----~g~~~~vDa~qs~g~~pidv~~~-----~~~~~s~hK~lG-P~G~g~l 232 (386)
T 3qm2_A 165 -DNAAYLHYCPNETIDGIAIDETPDFG-----PEVVVTADFSSTILSAPLDVSRY-----GVIYAGAQKNIG-PAGLTLV 232 (386)
T ss_dssp -TTCSCEEECSEETTTTEECCCCCCCC-----TTCCEEEECTTTTTSSCCCGGGC-----SEEEEETTTTTC-CTTEEEE
T ss_pred -CCCcEEEEECCcCCcCEecCchhhhc-----CCCEEEEEcccccCCCCCCcccc-----CEEEEecccccC-CCccEEE
Confidence 689999999999999996 8999886 79999999999999999999875 578899999995 9999999
Q ss_pred EEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYI-GHEVIKKQEETYI 388 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~-g~~~i~~~~~~l~ 388 (609)
++++++ ++.+.|..+. . ..|....+.....|||++.+++..+.++...... |++.+.+++++++
T Consensus 233 ~v~~~~--~~~~~~~~p~--~-----------~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~ 297 (386)
T 3qm2_A 233 IVREDL--LGKAHESCPS--I-----------LDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKA 297 (386)
T ss_dssp EEEGGG--CSCCCTTSCG--G-----------GCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred EECHHH--HhhhcccCCc--H-----------HHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999 6666554221 0 0011112334556898877765433333322455 7999999999999
Q ss_pred HHHHHHhCCCCce-EEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh
Q 038499 389 ERALERLLPNQNI-KILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 389 ~~~~~~L~~~p~i-~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
+++++.|+++ ++ ....+ ...|++ +++|.+.. .. ++ ..+.+.| +.+||.++.|..|.
T Consensus 298 ~~l~~~l~~~-~~~~~~~~-~~~rs~~iv~f~~~~-~~---------------~~-~~~~~~L-~~~gI~~~~g~~~~-- 355 (386)
T 3qm2_A 298 ELLYGVIDNS-DFYRNDVA-QANRSRMNVPFQLAD-NT---------------LD-KVFLEES-FAAGLHALKGHRVV-- 355 (386)
T ss_dssp HHHHHHHHTC-SSEECCBC-GGGBCSSEEEEEESS-GG---------------GH-HHHHHHH-HHTTEECCBCCTTT--
T ss_pred HHHHHHHHHC-CCcccCCC-HHHcCceEEEEECCC-cc---------------cc-HHHHHHH-HHCCCEEeCCCCCc--
Confidence 9999999988 44 33222 224554 78888864 11 34 5666667 45799998775442
Q ss_pred hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 467 ~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+.+|+|+++++|++||++++++|++++++
T Consensus 356 -----------------------------~~iRiS~~~~~t~edId~l~~~l~~~~~~ 384 (386)
T 3qm2_A 356 -----------------------------GGMRASIYNAMPIEGVKALTDFMIDFERR 384 (386)
T ss_dssp -----------------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -----------------------------CeEEEEcCCCCCHHHHHHHHHHHHHHHHh
Confidence 45999999999999999999999998764
|
| >2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-34 Score=302.16 Aligned_cols=365 Identities=14% Similarity=0.106 Sum_probs=270.6
Q ss_pred HHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC
Q 038499 56 TWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG 135 (609)
Q Consensus 56 ~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g 135 (609)
..+|++|+... +.+|+|+.+.++.++.+.+++.+.+.. + .+......++++++++++++|
T Consensus 8 ~~~r~~f~~~~----------~~~~l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g 67 (386)
T 2dr1_A 8 EAFKEVYEMVK----------PKYKLFTAGPVACFPEVLEIMKVQMFS-----H-----RSKEYRKVHMDTVERLREFLE 67 (386)
T ss_dssp HHHHHHHHHHS----------CCSEECCSSSCCCCHHHHHHTTSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhcC----------ccceeecCCCcCCcHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhC
Confidence 67888887432 347999999999999888887654421 1 123347788999999999999
Q ss_pred CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc--hHHHHHHcCceEEEEecCCC
Q 038499 136 GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS--NLLSWRQSLAEVVEIGLDDD 213 (609)
Q Consensus 136 ~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s--~~~~~~~~G~~vv~v~~~~~ 213 (609)
.+..+++++| +|+++++..++.++ +++|| .|+++.+.|++ +...++..|++++.++.+.+
T Consensus 68 ~~~~~~v~~~-~g~t~a~~~~~~~l---------------~~~gd--~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~ 129 (386)
T 2dr1_A 68 VEKGEVLLVP-SSGTGIMEASIRNG---------------VSKGG--KVLVTIIGAFGKRYKEVVESNGRKAVVLEYEPG 129 (386)
T ss_dssp CSSSEEEEES-SCHHHHHHHHHHHH---------------SCTTC--EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTT
T ss_pred CCCCcEEEEe-CChHHHHHHHHHHh---------------hcCCC--eEEEEcCCchhHHHHHHHHHhCCceEEEecCCC
Confidence 9722368888 67777888888776 36888 69999999998 66667788999999999888
Q ss_pred CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEE
Q 038499 214 GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIF 293 (609)
Q Consensus 214 g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~ 293 (609)
+.+|+++|++++++. ++++++++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... +.|+++
T Consensus 130 ~~~d~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~ 203 (386)
T 2dr1_A 130 KAVKPEDLDDALRKN---PDVEAVTITYNETSTGVLNPLPELAKVAKEHDKLVFVDAVSAMGGADIKFDKW---GLDVVF 203 (386)
T ss_dssp CCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCSEEE
T ss_pred CCCCHHHHHHHHhcC---CCCcEEEEEeecCCcchhCCHHHHHHHHHHcCCeEEEEccccccCcccccccc---CCcEEE
Confidence 889999999999531 47899999999999999999999999999999999999999988766665543 689999
Q ss_pred EcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccc-ccccCCChhHHHHH--HHHHHHH
Q 038499 294 LSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE-ERESGGTPQVIQMI--RAALAFW 370 (609)
Q Consensus 294 ~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~-~r~~~gtp~i~~~~--~aal~~~ 370 (609)
+|+||++++|.|+|++++++++ ++.+.+....+.. .+...++.... .+...++++..... .+++..+
T Consensus 204 ~s~sK~~~~~~g~G~~~~~~~~--~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~ 273 (386)
T 2dr1_A 204 SSSQKAFGVPPGLAIGAFSERF--LEIAEKMPERGWY--------FDIPLYVKYLKEKESTPSTPPMPQVFGINVALRII 273 (386)
T ss_dssp EETTSTTCCCSSCEEEEECHHH--HHHHTTCTTCCST--------TCHHHHHHHHHHHSSCSSCCCHHHHHHHHHHHHHH
T ss_pred EeccccccCCCceEEEEECHHH--HHHHhcCCCCceE--------EeHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHH
Confidence 9999999988789999999987 3333322111111 00000111111 22345565554433 3334332
Q ss_pred HHHhc-CHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHH
Q 038499 371 VKEYI-GHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLL 449 (609)
Q Consensus 371 ~~~~~-g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 449 (609)
+.. +.+.+.++.+++++++.+.|+++ ++++..+.......++++.+.. + .+...+.+.|
T Consensus 274 --~~~g~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~l 333 (386)
T 2dr1_A 274 --EKMGGKEKWLEMYEKRAKMVREGVREI-GLDILAEPGHESPTITAVLTPP-G----------------IKGDEVYEAM 333 (386)
T ss_dssp --HHTTCHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCTTCBCSSEEEEECCT-T----------------CCHHHHHHHH
T ss_pred --HHhcCHHHHHHHHHHHHHHHHHHHHHc-CCeeCcCccccCCceEEEEcCC-C----------------CCHHHHHHHH
Confidence 344 68889999999999999999887 7877765321133455555542 1 3577889989
Q ss_pred hhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 450 NDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 450 ~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++ ||.+++|..+. .++++||+++.+++++|+++++++|+++++.
T Consensus 334 ~~~-gi~v~~~~~~~-----------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 378 (386)
T 2dr1_A 334 RKR-GFELAKGYGSV-----------------------------KEKTFRIGHMGYMKFEDIQEMLDNLREVINE 378 (386)
T ss_dssp HHT-TEECEECCGGG-----------------------------TTTEEEEECCSSCCHHHHHHHHHHHHHHHHH
T ss_pred HHC-CeEEecCcccc-----------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence 775 99999776321 1479999999999999999999999998765
|
| >2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=302.74 Aligned_cols=357 Identities=11% Similarity=0.053 Sum_probs=263.3
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.+|+|+++.++.++.|.+++.+.+. + + .+........++++.+++++|++++ +|++| +|+++++..+
T Consensus 8 ~~~yl~~~~~~~~~~~v~~a~~~~~~----~-~-----~~~~~~~~~~~l~~~la~~~g~~~~-~v~~t-~g~t~a~~~~ 75 (392)
T 2z9v_A 8 DPVITLTAGPVNAYPEVLRGLGRTVL----Y-D-----YDPAFQLLYEKVVDKAQKAMRLSNK-PVILH-GEPVLGLEAA 75 (392)
T ss_dssp CCSEECSSSCCCCCHHHHHHTTSCCC----C-T-----TSHHHHHHHHHHHHHHHHHTTCSSC-CEEES-SCTHHHHHHH
T ss_pred CcceeecCCCcCCCHHHHHHHhcccc----c-c-----ccHHHHHHHHHHHHHHHHHhCCCCC-EEEEe-CCchHHHHHH
Confidence 56899999999999998888766543 1 2 2334567788999999999999765 89998 6667788888
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
+..+ +++|| .|+++..+|+++. ...+..|++++.++.++++.+|+++|++++++. +++
T Consensus 76 ~~~~---------------~~~gd--~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~ 135 (392)
T 2z9v_A 76 AASL---------------ISPDD--VVLNLASGVYGKGFGYWAKRYSPHLLEIEVPYNEAIDPQAVADMLKAH---PEI 135 (392)
T ss_dssp HHHH---------------CCTTC--CEEEEESSHHHHHHHHHHHHHCSCEEEEECCTTSCCCHHHHHHHHHHC---TTC
T ss_pred HHHh---------------cCCCC--EEEEecCCcccHHHHHHHHHcCCceEEeeCCCCCCCCHHHHHHHHhcC---CCC
Confidence 7776 36888 5888899998863 223457999999999888889999999999631 478
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
+++++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... +.|++++|+||+++||.|+|+++++++
T Consensus 136 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~G~l~~~~~ 212 (392)
T 2z9v_A 136 TVVSVCHHDTPSGTINPIDAIGALVSAHGAYLIVDAVSSFGGMKTHPEDC---KADIYVTGPNKCLGAPPGLTMMGVSER 212 (392)
T ss_dssp CEEEEESEEGGGTEECCHHHHHHHHHHTTCEEEEECTTTBTTBSCCGGGG---TCSEEEECSSSTTCCCSCCEEEEECHH
T ss_pred cEEEEeccCCCCceeccHHHHHHHHHHcCCeEEEEcccccCCcccccccc---cceEEEecCcccccCCCceeEEEECHH
Confidence 99999999999999999999999999999999999999988776666543 689999999999888888999999988
Q ss_pred hhccCCCCCCccCCCceEeeccccccccccccc-ccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED-IEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~-~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
+. +.+.+...|.+. + ......++.. .......++++..+.. .+++..+ +..|.+.+.++.+++++++
T Consensus 213 ~~--~~l~~~~~g~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~l 282 (392)
T 2z9v_A 213 AW--AKMKANPLAPRA--S----MLSIVDWENAWSRDKPFPFTPSVSEINGLDVALDLY--LNEGPEAVWARHALTAKAM 282 (392)
T ss_dssp HH--HHHHTCTTSCCS--S----TTCSGGGTTTTSTTSCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHH
T ss_pred HH--HHhhhccCCCCc--e----eccHHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHH
Confidence 73 333222111000 0 0000000010 0123446777766544 3444443 3457888899999999999
Q ss_pred HHHhCCCCceEEeCCCCC-CCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhh
Q 038499 392 LERLLPNQNIKILGNTST-KRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470 (609)
Q Consensus 392 ~~~L~~~p~i~v~~~~~~-~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ 470 (609)
.+.|+++ +++++.+... ....++++.+.. + .+...+.+.|.+++||.+++|..+.
T Consensus 283 ~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~l~~~L~~~~gi~v~~g~~~~------ 338 (392)
T 2z9v_A 283 RAGVTAM-GLSVWAASDSIASPTTTAVRTPD-G----------------VDEKALRQAARARYGVVFSSGRGET------ 338 (392)
T ss_dssp HHHHHHT-TCCBSSSSGGGBCTTEEEEECCT-T----------------CCHHHHHHHHHHHHCEECEECCGGG------
T ss_pred HHHHHHc-CCeeccCCccccCCceEEEECCC-C----------------CCHHHHHHHHHhcCCEEEecCCCCC------
Confidence 9999887 8877763211 134455665532 1 3577899988776699999876421
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhc
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++||++ +++++++|+++++++|+++++..
T Consensus 339 -----------------------~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~~~ 371 (392)
T 2z9v_A 339 -----------------------LGKLTRIGHMGPTAQPIYAIAALTALGGAMNAA 371 (392)
T ss_dssp -----------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred -----------------------CCCeEEEeCcccccCHHHHHHHHHHHHHHHHHc
Confidence 248999996 55899999999999999998754
|
| >1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=303.51 Aligned_cols=372 Identities=17% Similarity=0.180 Sum_probs=268.1
Q ss_pred HHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHH
Q 038499 53 KKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKK 132 (609)
Q Consensus 53 ~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~ 132 (609)
+.++.+|++|+... +.+|+|+++.++.|+.|.+++.+.+...++++... +...........++++++++
T Consensus 14 ~~~~~~r~~f~~~~----------~~~yld~~~~~~~~~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~ 82 (416)
T 1qz9_A 14 DSLAPLRQQFALPE----------GVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLAT 82 (416)
T ss_dssp CTTGGGGGGBCCCT----------TCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHT
T ss_pred chhHHHHHhCCCCC----------CeEeecCCCcCCCcHHHHHHHHHHHHHHHhccCcc-ccchhhHHHHHHHHHHHHHH
Confidence 34567888887442 68999999999999999999999887555554321 11111223667889999999
Q ss_pred HhCCCCCCcEEEeCChHHHHHHHHHHHh-cccchhhHHHHHHhhh----cCCCceEEEECCCCccchHHHHHH----c--
Q 038499 133 CLGGGQEDAMIFCGSGTTAAIKRLQEVM-GIAVPSILREKLIKCL----RDEERWVVFVGPHEHHSNLLSWRQ----S-- 201 (609)
Q Consensus 133 ~~g~~~~~~vift~sGttaal~~l~~~l-~~~~~~~~~~~~~~~l----~~gd~~~Vlv~~~~h~s~~~~~~~----~-- 201 (609)
++|++++ +|+|| +|+++++..++..+ . + ++||+ +|++++.+|+++..++.. .
T Consensus 83 ~~g~~~~-~v~~~-~g~t~al~~al~~~~~--------------~~~~~~~gd~-vii~~~~~~~~~~~~~~~~~~~~~~ 145 (416)
T 1qz9_A 83 LIGARDG-EVVVT-DTTSINLFKVLSAALR--------------VQATRSPERR-VIVTETSNFPTDLYIAEGLADMLQQ 145 (416)
T ss_dssp TTTCCTT-SEEEC-SCHHHHHHHHHHHHHH--------------HHHHHSTTCC-EEEEETTSCHHHHHHHHHHHHHHCS
T ss_pred HcCCCcc-cEEEe-CChhHHHHHHHHhhcc--------------cccccCCCCc-EEEEcCCCCCchHHHHHHHHHHhcC
Confidence 9999765 89998 66777787666553 1 2 57774 678888899987766543 3
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccC
Q 038499 202 LAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDV 281 (609)
Q Consensus 202 G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~ 281 (609)
|++++.++. +++|+++|+ ++++++++++++||||.+.|+++|.++|++||+++|+|++++.+..++++
T Consensus 146 g~~~~~v~~-------~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~~~ 213 (416)
T 1qz9_A 146 GYTLRLVDS-------PEELPQAID-----QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDL 213 (416)
T ss_dssp SCEEEEESS-------GGGHHHHCS-----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCH
T ss_pred CceEEEeCc-------HHHHHHHhC-----CCceEEEEeccccCcccccCHHHHHHHHHHcCCEEEEEccccccCcCCCh
Confidence 999999986 788888887 57999999999999999999999999999999999999999988776655
Q ss_pred CCCCCCCccEEEEcCCCCCCCCCCc-EEEEEechhhccCCCCCCccCC-CceEeecccccccccccccccccccCCChhH
Q 038499 282 RSGQTDGYDAIFLSTHKFLGGPGSP-GILLMTKALYQLGSFPPSTCGG-GTVNYVNGFNEKDTLYLEDIEERESGGTPQV 359 (609)
Q Consensus 282 ~~~~~~~~D~v~~S~hK~lggp~g~-G~L~~~~~~~~l~~~~p~~~gg-g~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i 359 (609)
... +.|++++|+||+++++.++ |++++++++ ++.+.+...|+ +.. ..+.......+.....+...++++.
T Consensus 214 ~~~---~~d~~~~s~~K~l~~g~~~~g~l~~~~~~--~~~l~~~~~g~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (416)
T 1qz9_A 214 HQA---GADYAIGCTYKYLNGGPGSQAFVWVSPQL--CDLVPQPLSGWFGHS---RQFAMEPRYEPSNGIARYLCGTQPI 285 (416)
T ss_dssp HHH---TCSEEEECSSSTTCCCTTCCCEEEECTTT--TTTSCCSCCCGGGBC---TTSCCCSSCCBCSSGGGGCCSCCCH
T ss_pred hhc---CCCEEEecCcccCCCCCCCeEEEEECHHH--HhccCCCccccCccc---cccCCCCccCCCcchHHhcCCCCCH
Confidence 433 5799999999998655566 999999998 55666554442 110 0011000111112234556778877
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-C--ceEEeCCCCC-CCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN-Q--NIKILGNTST-KRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~-p--~i~v~~~~~~-~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
.+...+..++......+.+.+.++.+++++++.+.|.++ | +++++.+... .+.+++++.+ +
T Consensus 286 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~-------------- 350 (416)
T 1qz9_A 286 TSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEH-P-------------- 350 (416)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEEC-T--------------
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCeEEeCCCCHHHcCCEEEEec-C--------------
Confidence 665433222222234678899999999999999999875 6 8888876321 1345544443 2
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC-CCCCHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP-YYMSNEEFEFT 514 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~-~~~t~eeid~l 514 (609)
+...+.+.|.+ .||.++.. .++++||+++ +++|++|++++
T Consensus 351 -----~~~~l~~~l~~-~gi~~~~~---------------------------------~~~~lRis~~~~~~t~~~i~~~ 391 (416)
T 1qz9_A 351 -----EGYAVIQALID-RGVIGDYR---------------------------------EPRIMRFGFTPLYTTFTEVWDA 391 (416)
T ss_dssp -----THHHHHHHHHT-TTEECEEE---------------------------------TTTEEEEECCTTTCCHHHHHHH
T ss_pred -----CHHHHHHHHHh-CCcEeccC---------------------------------CCCeEEEeCcccCCCHHHHHHH
Confidence 25678888866 49986410 1489999997 59999999999
Q ss_pred HHHHHHHHHhcc
Q 038499 515 LEALEFIAIYGQ 526 (609)
Q Consensus 515 l~al~~v~~~~~ 526 (609)
+++|+++++...
T Consensus 392 ~~~l~~~~~~~~ 403 (416)
T 1qz9_A 392 VQILGEILDRKT 403 (416)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHhccc
Confidence 999999987643
|
| >3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-33 Score=300.65 Aligned_cols=373 Identities=20% Similarity=0.220 Sum_probs=271.7
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
..+|||+++.++.++.|.+++.+.+...+++++.. +..+....+...++++++++++|++++ +|+|| +|+++++..+
T Consensus 18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~-~v~~~-~g~t~a~~~~ 94 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSS-YVAGRKAKDIINTARASLAKMIGGKPQ-DIIFT-SGGTESNNLV 94 (432)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHHCCSCTTCS-SHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SCHHHHHHHH
T ss_pred CcEEeeCCccCCCCHHHHHHHHHHHHHhcCCCccC-cHHHHHHHHHHHHHHHHHHHHcCCCcC-eEEEe-CChHHHHHHH
Confidence 57999999999999999999999887666777753 455666778899999999999999766 89998 7777788888
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCc-----------eEEEECCCCccchHHHHHH----cCceEEEEecCC-CCCCCHHH
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEER-----------WVVFVGPHEHHSNLLSWRQ----SLAEVVEIGLDD-DGLLDIEA 220 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~-----------~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~-~g~ld~e~ 220 (609)
+..+.... ....+++||+ ..|+++..+|+++..+|.. .|++++.++.++ ++.+|+++
T Consensus 95 ~~~~~~~~-------~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~ 167 (432)
T 3a9z_A 95 IHSTVRCF-------HEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVED 167 (432)
T ss_dssp HHHHHHHH-------HHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSCEEEEECCCTTTSSCCHHH
T ss_pred HHHHHhhh-------hhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCcEEEEEecCcccCCcCHHH
Confidence 77652000 0000124531 2688889999998877754 589999999986 78899999
Q ss_pred HHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhC----------CeEEEeccccCCcccccCCCCCCCCcc
Q 038499 221 LRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYG----------GFACFDFAASGPYVEIDVRSGQTDGYD 290 (609)
Q Consensus 221 L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g----------~~vivD~A~~~~~~~id~~~~~~~~~D 290 (609)
|+++++ ++++++++++++||||.+.|+++|.++|+++| +++|+|++++.+..++++... +.|
T Consensus 168 l~~~i~-----~~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~~~~~~~~---~~d 239 (432)
T 3a9z_A 168 ILAAVR-----PTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDL---GVD 239 (432)
T ss_dssp HHHTCC-----TTEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTSCCCHHHH---CCS
T ss_pred HHHhcc-----CCceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCcccChhhc---CCC
Confidence 999998 57999999999999999999999999999999 999999999888766665443 679
Q ss_pred EEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHH
Q 038499 291 AIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALA 368 (609)
Q Consensus 291 ~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~ 368 (609)
++++|+||++| |. +|+++++++.. ...+.+...|++. ..+...++++..... .+++.
T Consensus 240 ~~~~s~~K~~g-~~-~G~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~aal~ 298 (432)
T 3a9z_A 240 FLTIVGHKFYG-PR-IGALYVRGVGK-LTPLYPMLFGGGQ------------------ERNFRPGTENTPMIAGLGKAAD 298 (432)
T ss_dssp EEEEEGGGTTC-CS-CEEEEETTBTT-TBCCCCSCCSSCG------------------GGGTSCSCCCHHHHHHHHHHHH
T ss_pred EEEEehhHhcC-Cc-ceEEEEccccc-cCCcCceeecCCc------------------cccccCCCcCHHHHHHHHHHHH
Confidence 99999999985 77 89999998751 2345555555443 234556777665543 33444
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE--EeCCC-CCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHH
Q 038499 369 FWVKEYIGHEVIKKQEETYIERALERLLPNQNIK--ILGNT-STKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPF 444 (609)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~--v~~~~-~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (609)
+. + .+.+.+.++.+++++++.+.|+++++++ +.++. ...+.+ +++|.+.. .. .+...
T Consensus 299 ~~--~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~ 359 (432)
T 3a9z_A 299 LV--S-ENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQG-SQ---------------LRGYM 359 (432)
T ss_dssp HH--H-HHHHHHHHHHHHHHHHHHHHHHHHHGGGEEESSCCTTCCBCTTEEEEEECS-TT---------------CCHHH
T ss_pred HH--H-hhHHHHHHHHHHHHHHHHHHHHhccCCcEEEeCCCCcccCCCCEEEEEeCC-CC---------------CcHHH
Confidence 43 2 2578888999999999999998765543 33431 112344 66666653 11 23455
Q ss_pred HHHHHhhhcCcEeccCcccCChh----hhhhc--CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 445 VATLLNDLFGIQARGGCACAGPY----GHHLL--DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 445 v~~~L~~~~GI~v~~G~~ca~p~----~~~ll--~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
+.+.| .+|.++.|..|...+ .+.+. |+... ..++++|||++.++|++|+++++++|
T Consensus 360 ~~~~l---~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~---------------~~~~~iRis~~~~~t~eei~~~~~~l 421 (432)
T 3a9z_A 360 VLAQC---QTLLASVGASCHSDHEDRPSPVLLSCGIPVD---------------VARNAVRLSVGRSTTRAEVDLIVQDL 421 (432)
T ss_dssp HHHHC---SSEECBSSCGGGGGGTTSCCHHHHHTTCCHH---------------HHTTEEEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHh---cCeEEeccccccCCCCCCccHHHHhcCCCcc---------------ccCceEEEEcCCCCCHHHHHHHHHHH
Confidence 65554 389999998887321 01111 22110 01489999999999999999999999
Q ss_pred HHHHHhc
Q 038499 519 EFIAIYG 525 (609)
Q Consensus 519 ~~v~~~~ 525 (609)
+++++..
T Consensus 422 ~~~~~~~ 428 (432)
T 3a9z_A 422 KQAVNQL 428 (432)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9987654
|
| >2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-33 Score=294.76 Aligned_cols=355 Identities=12% Similarity=0.099 Sum_probs=260.9
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.+|+++.+..+.++.|.+++.+.+.. + + .........++++++++++|.+++++|++| +|+++++..+
T Consensus 18 ~~~~~~~~g~~~~~~~v~~a~~~~~~~-----~---~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~-~g~t~a~~~~ 86 (393)
T 2huf_A 18 PNKLLMGPGPSNAPQRVLDAMSRPILG-----H---L--HPETLKIMDDIKEGVRYLFQTNNIATFCLS-ASGHGGMEAT 86 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHTTSCCCC-----T---T--SHHHHHHHHHHHHHHHHHHTCCCSEEEEES-SCHHHHHHHH
T ss_pred CCeEEecCCCCCCCHHHHHHHHhhhcc-----C---C--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEc-CcHHHHHHHH
Confidence 456888887778888888887665432 1 1 223467789999999999999764378888 6777788888
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
+..+ +++|| .|+++..+|+++. ...+..|++++.++.++++.+|+++|++++++ .++
T Consensus 87 ~~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~ 145 (393)
T 2huf_A 87 LCNL---------------LEDGD--VILIGHTGHWGDRSADMATRYGADVRVVKSKVGQSLSLDEIRDALLI----HKP 145 (393)
T ss_dssp HHHH---------------CCTTC--EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCC
T ss_pred HHHH---------------hCCCC--EEEEECCCcchHHHHHHHHHcCCeeEEEeCCCCCCCCHHHHHHHHhc----cCC
Confidence 8776 36888 6899989998853 22345799999999988888999999999983 278
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
+++++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... +.|++++|+||+++||.|.|+++++++
T Consensus 146 ~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~sK~l~g~~G~G~~~~~~~ 222 (393)
T 2huf_A 146 SVLFLTQGDSSTGVLQGLEGVGALCHQHNCLLIVDTVASLGGAPMFMDRW---EIDAMYTGSQKVLGAPPGITPVSFSHR 222 (393)
T ss_dssp SEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSSSTTCCCSSCEEEEECHH
T ss_pred cEEEEEccCCCccccCCHHHHHHHHHHcCCEEEEEcccccCCCCcchhhc---CccEEEECCCcccccCCCeEEEEECHH
Confidence 99999999999999999999999999999999999999988777666543 689999999999888888999999987
Q ss_pred hhccCCCC-------CCccCCCceEeecccccccccccc-cccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Q 038499 315 LYQLGSFP-------PSTCGGGTVNYVNGFNEKDTLYLE-DIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEET 386 (609)
Q Consensus 315 ~~~l~~~~-------p~~~ggg~v~~~~~~~~~~~~~~~-~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~ 386 (609)
+. +.+. +...+++. ...|+. ....+...+++++.+...+..++......+.+.+.++.++
T Consensus 223 ~~--~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 290 (393)
T 2huf_A 223 AV--ERYKRRNTKVKVYYWDMSL----------VGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHED 290 (393)
T ss_dssp HH--HHHHTCSSCCSCGGGCHHH----------HHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HH--HHHhhcCCCCceEEEchHH----------HHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 73 2221 11111000 000000 1123455678777765533222222233478888999999
Q ss_pred HHHHHHHHhCCCCceEEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 387 YIERALERLLPNQNIKILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 387 l~~~~~~~L~~~p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
+++++.+.|+++ +++++.+.. .+.+ ++++.+.. + .+..++.+.|.+++||.+++|..|.
T Consensus 291 ~~~~l~~~L~~~-g~~~~~~~~-~~~~~~~~~~~~~-~----------------~~~~~~~~~L~~~~gi~v~~g~~~~- 350 (393)
T 2huf_A 291 CAKRLYRGLQDA-GFELYADPK-DRLSTVTTIKVPQ-G----------------VDWLKAAQYAMKTYLVEISGGLGPT- 350 (393)
T ss_dssp HHHHHHHHHHHT-TCCBSSCGG-GBCTTEEEEECCT-T----------------CCHHHHHHHHHHHHCEECBCCCGGG-
T ss_pred HHHHHHHHHHHc-CCeeccCcc-ccCCcEEEEEcCC-C----------------CCHHHHHHHHHHhCCEEEecCcccc-
Confidence 999999999887 787776521 1344 55555542 1 4577898888776799999876542
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
.++++||++ ++.++++|+++++++|+++++...
T Consensus 351 ----------------------------~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~~~~ 384 (393)
T 2huf_A 351 ----------------------------AGQVFRIGLMGQNATTERVDRVLQVFQEAVAAVK 384 (393)
T ss_dssp ----------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHHC
T ss_pred ----------------------------cCCEEEEEcccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 148999999 545689999999999999987644
|
| >2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-33 Score=296.82 Aligned_cols=367 Identities=15% Similarity=0.098 Sum_probs=261.2
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
.+|+++....+.++.+.+++.+.+.. + ..........++++.+++++|.+++.+|++| +|+++++..++
T Consensus 18 ~~~~~~~~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~g~t~al~~~~ 86 (396)
T 2ch1_A 18 EKIMMGPGPSNCSKRVLTAMTNTVLS-----N-----FHAELFRTMDEVKDGLRYIFQTENRATMCVS-GSAHAGMEAML 86 (396)
T ss_dssp CCBCCSSSSCCCCHHHHHHTTSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhcccccc-----C-----CChhHHHHHHHHHHHHHHHhCCCCCcEEEEC-CcHHHHHHHHH
Confidence 44666666566777777776543321 1 1223345688999999999999764368888 67777888888
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
.++ +++|| .|+++.++|+++. ..++..|++++.++.+.++.+|+++|++++++ .+++
T Consensus 87 ~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~ 145 (396)
T 2ch1_A 87 SNL---------------LEEGD--RVLIAVNGIWAERAVEMSERYGADVRTIEGPPDRPFSLETLARAIEL----HQPK 145 (396)
T ss_dssp HHH---------------CCTTC--EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH----HCCS
T ss_pred HHh---------------cCCCC--eEEEEcCCcccHHHHHHHHHcCCceEEecCCCCCCCCHHHHHHHHHh----CCCC
Confidence 776 37888 6899999999874 25577899999999988888999999999983 2789
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
+|++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... ++|++++|+||++++|.|+|++++++++
T Consensus 146 ~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~~~ 222 (396)
T 2ch1_A 146 CLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYMDKW---EIDAVYTGAQKVLGAPPGITPISISPKA 222 (396)
T ss_dssp EEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTBTTBCCCTTTT---TCCEEECCCC-CCCCCSSCEEEEECHHH
T ss_pred EEEEECCCCCCceecCHHHHHHHHHHcCCEEEEEccccccCCccchhhc---CcCEEEEcCCccccCCCCeEEEEECHHH
Confidence 9999999999999999999999999999999999999988777766554 6799999999999988889999999877
Q ss_pred hccCCCCCC--ccCCCceEeeccccccc-ccccc-cccccccCCChhHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHH
Q 038499 316 YQLGSFPPS--TCGGGTVNYVNGFNEKD-TLYLE-DIEERESGGTPQVIQMIR--AALAFWVKEYIGHEVIKKQEETYIE 389 (609)
Q Consensus 316 ~~l~~~~p~--~~ggg~v~~~~~~~~~~-~~~~~-~~~~r~~~gtp~i~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~ 389 (609)
. +.+... ..+.... .... ..++. ....+...++++...... +++... ...+.+.+.++.+++++
T Consensus 223 ~--~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~ 292 (396)
T 2ch1_A 223 L--DVIRNRRTKSKVFYW------DLLLLGNYWGCYDEPKRYHHTVASNLIFALREALAQI--AEEGLENQIKRRIECAQ 292 (396)
T ss_dssp H--HHHHTCSSCCSCGGG------CHHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHH
T ss_pred H--HhhhhccCcccceEe------chHHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHH
Confidence 3 222111 0010000 0000 00000 001234556766655433 333332 23578888999999999
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG 468 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~ 468 (609)
++.+.|+++ +++++.+....+.+ ++++.+.. + .+...+.+.|.+++||.+++|..|.
T Consensus 293 ~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~L~~~~gi~v~~g~~~~---- 350 (396)
T 2ch1_A 293 ILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPK-G----------------VDWWKVSQYAMNNFSLEVQGGLGPT---- 350 (396)
T ss_dssp HHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCT-T----------------CCHHHHHHHHHHHHCBCCBCCCGGG----
T ss_pred HHHHHHHHC-CCeeccCCccccCCceEEEEcCC-C----------------CCHHHHHHHHHHhCCEEEecCcccc----
Confidence 999999887 78777653212233 45555432 1 4678899888776799999776432
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhcccccCCCcccccCC
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEEFEFTLEALEFIAIYGQRFLPLYNFNIKTG 539 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~eeid~ll~al~~v~~~~~~~~p~y~~~~~~~ 539 (609)
.++++||++ ++.++++|+++++++|+++++.. .+.|.|++.+|
T Consensus 351 -------------------------~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~~~---~~~~~~~~~~~ 394 (396)
T 2ch1_A 351 -------------------------FGKAWRVGIMGECSTVQKIQFYLYGFKESLKAT---HPDYIFEESNG 394 (396)
T ss_dssp -------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHH---CTTCCCC----
T ss_pred -------------------------CCCEEEEECCCCcCCHHHHHHHHHHHHHHHHHh---CccEEeccccC
Confidence 148999999 56679999999999999998754 58899999875
|
| >3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=297.70 Aligned_cols=345 Identities=11% Similarity=0.028 Sum_probs=254.4
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCC--chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE-eCChHHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCD--SYVGQHTTNMVHEASNYIKKCLGGGQEDAMIF-CGSGTTAAIKR 155 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~--~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vif-t~sGttaal~~ 155 (609)
+|+=+.+.++.|+.|.+++.+.+..+++|+.+.. ++.+....+.++++|+.+++++|++++++|+| | +|+|++++.
T Consensus 6 ~~~f~pgpt~~~~~V~~a~~~~~~~~~~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t-~~~T~a~n~ 84 (361)
T 3m5u_A 6 KINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQ-GGASLQFAM 84 (361)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSGGGSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEES-SHHHHHHHH
T ss_pred eEeecCCCCCCcHHHHHHHHHHHHhcccCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEc-CcHHHHHHH
Confidence 4655677789999999999999988877765421 23466788999999999999999975448998 7 677778998
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCce-EEEECCCCccchHHHHHHcCceEEEEecCCCCC--CCHHHHHHHHhhhccCC
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERW-VVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGL--LDIEALRSKLELYKDAK 232 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~-~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~--ld~e~L~~al~~~~~~~ 232 (609)
++..+ + ++|+. +|+++..+|... ..++..|++|+.++.++++. +++++ + |+ +
T Consensus 85 ~~~~~---------------~-~~~~~~~i~~~~~~~~~~-~~a~~~G~~v~~~~~~~~g~~~~~~~~-~--l~-----~ 139 (361)
T 3m5u_A 85 IPMNL---------------A-LNGVCEYANTGVWTKKAI-KEAQILGVNVKTVASSEESNFDHIPRV-E--FS-----D 139 (361)
T ss_dssp HHHHH---------------C-CSSCEEEEECSHHHHHHH-HHHHHTTCCEEEEEECTTTTSCSCCCC-C--CC-----T
T ss_pred HHHhc---------------C-CCCeEEEEeCCHHHHHHH-HHHHHcCCceEEEecccCcCCCcCChh-h--cC-----C
Confidence 87654 3 56642 355555555432 23355799999999988774 56666 3 76 6
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
+|++|+++|++|.||.+.|. | ++ +|+++++|++|++|+.++|+.. +|++++|+|||+| |.|+|+|+++
T Consensus 140 ~t~lv~~~~~e~~tG~~~~~--i---~~-~~~~~~vD~~q~~g~~~id~~~-----~d~~~~s~~K~~g-p~G~g~l~~~ 207 (361)
T 3m5u_A 140 NADYAYICSNNTIYGTQYQN--Y---PK-TKTPLIVDASSDFFSRKVDFSN-----IALFYGGVQKNAG-ISGLSCIFIR 207 (361)
T ss_dssp TSSEEEEESEETTTTEECSS--C---CC-CSSCEEEECGGGTTSSCCCCTT-----EEEEEEETTTTSS-CTTCEEEEEE
T ss_pred CCCEEEEeCCCCCcceeCCc--c---cc-cCCEEEEEcccccCCCCCCccc-----CCEEEEechhccC-CCccEEEEEc
Confidence 89999999999999999773 3 33 4999999999999999999974 5999999999995 9999999999
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYI-GHEVIKKQEETYIERA 391 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~-g~~~i~~~~~~l~~~~ 391 (609)
+++ ++.+.|.... .. ..|....+.....|||++.+++....++...... |++.+.++++++++++
T Consensus 208 ~~~--~~~~~~~~~p-~~-----------~~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l 273 (361)
T 3m5u_A 208 KDM--LERSKNKQIP-SM-----------LNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATML 273 (361)
T ss_dssp HHH--HHHHHTCCCC-GG-----------GCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHH--HhhhcCCCCC-ce-----------eehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 998 4344331100 01 0011111234456899988876544444433667 8999999999999999
Q ss_pred HHHhCCCCce-EEeCCCCCCCc-ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 392 LERLLPNQNI-KILGNTSTKRQ-AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 392 ~~~L~~~p~i-~v~~~~~~~r~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
++.|++++++ .++.+. ..++ .+++|.+.. .. .++ ..+...|. ..||.++.|..+
T Consensus 274 ~~~L~~~~g~~~~~~~~-~~rs~~ivsf~~~~-~~--------------~~~-~~~~~~L~-~~gI~~~~g~~~------ 329 (361)
T 3m5u_A 274 YECIDLSNGFYKGHADK-KDRSLMNVSFNIAK-NK--------------DLE-PLFVKEAE-EAGMIGLKGHRI------ 329 (361)
T ss_dssp HHHHHTSTTSEEESSCG-GGBCSSEEEEEESS-CT--------------THH-HHHHHHHH-HTTEECCBCCTT------
T ss_pred HHHHHHCCCeeeccCCH-HHcCCeEEEEECCC-ch--------------hhh-HHHHHHHH-HCCCEEecCCCc------
Confidence 9999999876 665442 2344 478888763 10 023 46777774 569998866432
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+.+|+|++.++|++||++++++|+++.++
T Consensus 330 -------------------------~g~iRiS~~~~~t~edId~l~~al~~~~~~ 359 (361)
T 3m5u_A 330 -------------------------LGGIRASIYNALNLDQVKTLCEFMKEFQGK 359 (361)
T ss_dssp -------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------cCeEEEEccCCCCHHHHHHHHHHHHHHHHh
Confidence 156999999999999999999999998865
|
| >1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.4e-33 Score=294.26 Aligned_cols=347 Identities=17% Similarity=0.136 Sum_probs=258.4
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.+|+|+.+.++.++.+.+++.+.+.. + .+....+.++++++++++++|.+++.+|++| +|+++++..+
T Consensus 33 ~~~~l~~~~~~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g~~~~~~v~~t-~g~t~al~~~ 101 (393)
T 1vjo_A 33 PSRLLLGPGPSNAHPSVLQAMNVSPVG-----H-----LDPAFLALMDEIQSLLRYVWQTENPLTIAVS-GTGTAAMEAT 101 (393)
T ss_dssp CCCEECSSSCCCCCHHHHHHHSSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHHHHHH
T ss_pred ccceeccCCCCCCCHHHHHHHhccccc-----c-----cCHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CchHHHHHHH
Confidence 347999999999999998888665431 1 1233567889999999999999643278998 6777788888
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc--hHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS--NLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s--~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
+..+ +++|| .|++..+.|++ +...++..|++++.++.+.++.+|+++|++++++ .++
T Consensus 102 ~~~~---------------~~~gd--~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~ 160 (393)
T 1vjo_A 102 IANA---------------VEPGD--VVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALET----HRP 160 (393)
T ss_dssp HHHH---------------CCTTC--EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCC
T ss_pred HHhc---------------cCCCC--EEEEEcCChhHHHHHHHHHHcCCceEEEecCCCCCCCHHHHHHHHhh----CCc
Confidence 8776 36888 68998999998 6777788899999999988888999999999983 178
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
+++++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... +.|++++|+||++++|+++|+++++++
T Consensus 161 ~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~---~~di~~~s~sK~l~~~~~~G~l~~~~~ 237 (393)
T 1vjo_A 161 AILALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAW---GVDLAYSCSQKGLGCSPGASPFTMSSR 237 (393)
T ss_dssp SEEEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEECCSSSTTCSCSSCEEEEECHH
T ss_pred eEEEEeccCCCcceeccHHHHHHHHHHcCCEEEEECCccccCcCCccccc---CccEEEEcCcccccCCCceEEEEECHH
Confidence 89999999999999999999999999999999999999988777666543 789999999999999989999999988
Q ss_pred hhccCCC-------CCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHH
Q 038499 315 LYQLGSF-------PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 315 ~~~l~~~-------~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~ 385 (609)
+. +.+ .+...+.. +. ..|. ...+...|+++..... .+++... ...+.+.+.++.+
T Consensus 238 ~~--~~~~~~~~~~~~~~~~~~---~~-------~~~~--~~~~~~~g~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~ 301 (393)
T 1vjo_A 238 AI--EKLQRRRTKVANWYLDMN---LL-------GKYW--GSERVYHHTAPINLYYALREALRLI--AQEGLANCWQRHQ 301 (393)
T ss_dssp HH--HHHHTCSSCCSCSTTCHH---HH-------HHHH--STTCCCCSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHH
T ss_pred HH--HHHhccCCCCCceecCcH---hh-------hhhh--ccCCCCCCCCCHHHHHHHHHHHHHH--HHccHHHHHHHHH
Confidence 73 222 11111000 00 0000 0112333465555433 3334332 3447888999999
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCc-ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQ-AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
++++++.+.|+++ +++++.+.. ... .++++.+.. + .+...+.+.|.+++||.+++|..|.
T Consensus 302 ~~~~~l~~~L~~~-g~~~~~~~~-~~~~~~~~~~~~~-~----------------~~~~~~~~~l~~~~gi~v~~g~~~~ 362 (393)
T 1vjo_A 302 KNVEYLWERLEDI-GLSLHVEKE-YRLPTLTTVCIPD-G----------------VDGKAVARRLLNEHNIEVGGGLGEL 362 (393)
T ss_dssp HHHHHHHHHHHHT-TCCBSSCGG-GBCSSEEEEECCT-T----------------CCHHHHHHHHHHHHCEECEECCGGG
T ss_pred HHHHHHHHHHHHc-CCcccCCcc-ccCCcEEEEEcCC-C----------------CCHHHHHHHHHhhCCEEEecCcccc
Confidence 9999999999887 787776531 112 344554432 1 3577899989776799999887543
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~eeid~ll~al~~v~ 522 (609)
.++++||++ ++.++++++++++++|++++
T Consensus 363 -----------------------------~~~~iRis~~~~~~~~~~i~~~~~~l~~~l 392 (393)
T 1vjo_A 363 -----------------------------AGKVWRVGLMGFNSRKESVDQLIPALEQVL 392 (393)
T ss_dssp -----------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHH
T ss_pred -----------------------------CCCEEEEeCCccCChHHHHHHHHHHHHHHh
Confidence 148999995 55667888999999998875
|
| >3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=292.95 Aligned_cols=364 Identities=15% Similarity=0.124 Sum_probs=264.3
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
.|+......+.++.|.+++.+.+.. + ........+.++++++++++|.+.++.+++++ |+++++..++.
T Consensus 14 ~~~~~pgp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~-sgt~al~~~~~ 82 (411)
T 3nnk_A 14 RLLMGPGPINADPRVLRAMSSQLIG-----Q-----YDPAMTHYMNEVMALYRGVFRTENRWTMLVDG-TSRAGIEAILV 82 (411)
T ss_dssp CEEESSSCCCCCHHHHHHHTSCCCC-----T-----TCHHHHHHHHHHHHHHHHHHTCCCSEEEEEES-CHHHHHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhhccccc-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEECC-CcHHHHHHHHH
Confidence 3555555566677787777654321 1 12334578899999999999998763478884 45557777777
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccc--hHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceE
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS--NLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPIL 236 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s--~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~l 236 (609)
.+ +++|| .|+++..+|++ ....++..|++++.++.+.++.+|+++|++++++ .++++
T Consensus 83 ~~---------------~~~gd--~Vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~~ 141 (411)
T 3nnk_A 83 SA---------------IRPGD--KVLVPVFGRFGHLLCEIARRCRAEVHTIEVPWGEVFTPDQVEDAVKR----IRPRL 141 (411)
T ss_dssp HH---------------CCTTC--EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCSE
T ss_pred Hh---------------cCCCC--EEEEecCCchHHHHHHHHHHcCCeEEEEecCCCCCCCHHHHHHHHhh----CCCeE
Confidence 65 47888 69999999988 5666778899999999988899999999999984 37999
Q ss_pred EEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhh
Q 038499 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALY 316 (609)
Q Consensus 237 v~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~ 316 (609)
+++++++|+||.+.|+++|.++|++||+++|+|++++.+..++++... ++|++++|+||+++||.|+|++++++++.
T Consensus 142 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~~~~ 218 (411)
T 3nnk_A 142 LLTVQGDTSTTMLQPLAELGEICRRYDALFYTDATASLGGNPLETDVW---GLDAVSAGMQKCLGGPSGTSPITLSARME 218 (411)
T ss_dssp EEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTBTTBCCCTTTT---TCSEEECCSTTTTCCCSSEEEEEECHHHH
T ss_pred EEEeCCCCCcceeccHHHHHHHHHHcCCEEEEECCcccCCcccchhcc---CCcEEEecCccccCCCCceEEEEECHHHH
Confidence 999999999999999999999999999999999999988887777654 78999999999988888999999998873
Q ss_pred c-cCC---CCCCccCCCceEeeccccccccccccc-------ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 038499 317 Q-LGS---FPPSTCGGGTVNYVNGFNEKDTLYLED-------IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 317 ~-l~~---~~p~~~ggg~v~~~~~~~~~~~~~~~~-------~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (609)
. +.. +.+.+.|++...... ......|++. ...+...+++++.....+..++......|.+.+.++.+
T Consensus 219 ~~~~~~~~~~~~~~g~~~~gg~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~ 296 (411)
T 3nnk_A 219 EAIRRRKCVEEGIRTDAHRDGDE--EMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHK 296 (411)
T ss_dssp HHHHTTCCCCGGGCCTTCCCCSS--CCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHhhcccccccccccccccccC--CCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 2 111 223333332211000 0001111111 13345667877766554333333334557889999999
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
++++++.+.|+++ +++++.+.......++++.+.. + .+..++.+.|.+++||.+++|..
T Consensus 297 ~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~l~~~l~~~~gi~v~~g~~--- 355 (411)
T 3nnk_A 297 LHGDALVKGIQAM-GLETFGDLKHKMNNVLGVVIPQ-G----------------INGDQARKLMLEDFGIEIGTSFG--- 355 (411)
T ss_dssp HHHHHHHHHHHHT-TCCBCSCGGGBCSSEEEEECCT-T----------------CCHHHHHHHHHHHHSEEEEECCG---
T ss_pred HHHHHHHHHHHHc-CCEeCCCcccccccEEEEECCC-C----------------CCHHHHHHHHHHhcCeEEeCccC---
Confidence 9999999999887 7887765321223445555432 1 46788999887777999997631
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
+. .++++||++ ++.++++|+++++++|+++++...
T Consensus 356 ~~--------------------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 391 (411)
T 3nnk_A 356 PL--------------------------HGKVWRIGTMGYNARKDCVMTTLSALEAVLNYLK 391 (411)
T ss_dssp GG--------------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHTT
T ss_pred CC--------------------------CCCEEEEeCccCcCCHHHHHHHHHHHHHHHHHcC
Confidence 10 257999998 777799999999999999987643
|
| >1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-32 Score=283.91 Aligned_cols=340 Identities=16% Similarity=0.042 Sum_probs=255.2
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEV 159 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (609)
|+.+.+..+.++.+.+++.+.+.. + .+........++++++++++|++++ ++++| +|+++++..++..
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~g~~~~-~i~~~-~g~t~a~~~~~~~ 70 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH-----H-----RTEAAREVFLKARGLLREAFRTEGE-VLILT-GSGTLAMEALVKN 70 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCSSE-EEEEE-SCHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCC-----c-----cCHHHHHHHHHHHHHHHHHhCCCCc-eEEEc-CchHHHHHHHHHh
Confidence 677777788889999998776531 1 2334567788999999999999865 89998 6777788888877
Q ss_pred hcccchhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEE
Q 038499 160 MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
+ +++|| .|+++..+|+++. ..++..|++++.++.+.++.+|+++|++ ++++++
T Consensus 71 ~---------------~~~gd--~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~--------~~~~~v 125 (352)
T 1iug_A 71 L---------------FAPGE--RVLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDVAK--------EGYAGL 125 (352)
T ss_dssp H---------------CCTTC--EEEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTSCC--------SSCSEE
T ss_pred c---------------cCCCC--eEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHhc--------cCCcEE
Confidence 6 36888 6999999999975 2335579999999998888889888765 268899
Q ss_pred EEecccCccccccCHHHHHHHHHHh--CCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~--g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
++++++||||.+.|+++|.++|++| |+++|+|++++.+..++++... +.|++++|+||+++||.|+|+++++++.
T Consensus 126 ~~~~~~nptG~~~~l~~i~~l~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~ 202 (352)
T 1iug_A 126 LLVHSETSTGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM---GVDAAASGSQKGLMCPPGLGFVALSPRA 202 (352)
T ss_dssp EEESEETTTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG---TCSEEEEESSSTTCCCSCEEEEEECHHH
T ss_pred EEEEecCCcceecCHHHHHHHHHhhCCCCEEEEECCccccCcceecccc---CeeEEEecCcccccCCCceeEEEECHHH
Confidence 9999999999999999999999999 9999999999887776665543 6899999999988888889999999987
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALE 393 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~ 393 (609)
++.+.+ ++.. .+...++.....+...++++..... .+++... +.. .+.+.++.+++++++.+
T Consensus 203 --~~~~~~---~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~-~~~~~~~~~~~~~~l~~ 266 (352)
T 1iug_A 203 --LERLKP---RGYY--------LDLARELKAQKEGESAWTPAINLVLAVAAVLEEV--LPR-LEEHLALKAWQNALLYG 266 (352)
T ss_dssp --HHTCCC---CSST--------TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--GGG-HHHHHHHHHHHHHHHHH
T ss_pred --HHHhhC---CCce--------eeHHHHHhhcccCCCCCCCCHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHH
Confidence 344433 1100 0001111111223445676665543 3344432 233 77888899999999999
Q ss_pred HhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcC
Q 038499 394 RLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 394 ~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~ 473 (609)
.|+++ +++++.+. ....++++.+.. + .+..++.+.|.++ ||.+++|..+.
T Consensus 267 ~L~~~-g~~~~~~~--~~~~~~~~~~~~-~----------------~~~~~~~~~l~~~-gi~v~~~~~~~--------- 316 (352)
T 1iug_A 267 VGEEG-GLRPVPKR--FSPAVAAFYLPE-G----------------VPYARVKEAFAQR-GAVIAGGQGPL--------- 316 (352)
T ss_dssp HHHHT-TCEESCSS--BCTTCEEEECCT-T----------------CCHHHHHHHHHTT-TEECEECCGGG---------
T ss_pred HHHHC-CCcccccc--cCCeEEEEEcCC-C----------------CCHHHHHHHHHHC-CEEEEeCCCcc---------
Confidence 99887 88887652 134466665542 1 4577899999765 99999775211
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++||+++.+++++|+++++++|++++++.
T Consensus 317 --------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 348 (352)
T 1iug_A 317 --------------------KGKVFRLSLMGAYDRYEALGVAGMFREVLEEI 348 (352)
T ss_dssp --------------------TTTEEEECCCSSCCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCEEEEEccccCCHHHHHHHHHHHHHHHHHh
Confidence 14899999999999999999999999988654
|
| >3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-33 Score=289.81 Aligned_cols=352 Identities=13% Similarity=0.066 Sum_probs=254.7
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEV 159 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (609)
|+.+.+..+.|+.+.+++.+.+..- ..+.+..+....+..+++++++++++|.+..++|+++ +|+++++..++..
T Consensus 6 ~~~~p~p~~~~~~v~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~-~g~t~al~~~~~~ 80 (362)
T 3ffr_A 6 IYFTPGPSELYPTVRQHMITALDEK----IGVISHRSKKFEEVYKTASDNLKTLLELPSNYEVLFL-ASATEIWERIIQN 80 (362)
T ss_dssp EEECSSSCCCCTTHHHHHHHHHHTT----TTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEE-SCHHHHHHHHHHH
T ss_pred eeccCCCcCCCHHHHHHHHHHhcCC----ccCcCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEe-CCchHHHHHHHHh
Confidence 4555555667788887777766531 1011123445668889999999999998644489998 6777789988887
Q ss_pred hcccchhhHHHHHHhhhcCCCceEEEECCCCccch--HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEE
Q 038499 160 MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN--LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
+. ++ + +++....|++. ....+..|++++.++.+.++.+|+++|+ ++ ++++++
T Consensus 81 l~---------------~~-~---~i~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~--~~-----~~~~~v 134 (362)
T 3ffr_A 81 CV---------------EK-K---SFHCVNGSFSKRFYEFAGELGREAYKEEAAFGKGFYPADIT--VP-----ADAEII 134 (362)
T ss_dssp HC---------------SS-E---EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCGGGCC--CC-----TTCCEE
T ss_pred cc---------------CC-c---EEEEcCcHHHHHHHHHHHHhCCCeEEEecCCCCCCCHHHHh--cc-----CCccEE
Confidence 63 44 3 44444445552 2244567999999999888889999998 44 689999
Q ss_pred EEecccCccccccCHHHHHHHHHHh-CCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhh
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQY-GGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALY 316 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~-g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~ 316 (609)
++++++||||.+.|+++|+++|++| |+++|+|++++.+..++++.. +|++++|+||+++||.|+|++++++++
T Consensus 135 ~~~~~~nptG~~~~l~~i~~la~~~p~~~li~D~a~~~~~~~~~~~~-----~d~~~~s~~K~~~~~~G~g~~~~~~~~- 208 (362)
T 3ffr_A 135 CLTHNETSSGVSMPVEDINTFRDKNKDALIFVDAVSSLPYPKFDWTK-----IDSVFFSVQKCFGLPAGLGVWILNDRV- 208 (362)
T ss_dssp EEESEETTTTEECCHHHHTTSGGGSTTSEEEEECTTTTTSSCCCTTS-----CSEEEEETTSTTCCCSCCEEEEEEHHH-
T ss_pred EEEcCCCCcceeCCHHHHHHHHHhCCCCEEEEecccccCCcccChhH-----CcEEEEecccccCCCCceEEEEECHHH-
Confidence 9999999999999999999999999 999999999998877776642 799999999999988889999999988
Q ss_pred ccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
++.+.+...||+...+. .+...+..........++++......+..++......|.+.+.++.+++++++.+.|+
T Consensus 209 -~~~~~~~~~gg~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 283 (362)
T 3ffr_A 209 -IEKSKALLAKRKSIGTY----HTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIE 283 (362)
T ss_dssp -HHHHHHHHHTTCCCCST----TSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhhhccccCCCCccc----ccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHH
Confidence 34444444454432211 1111122222233346777766654332222222344788999999999999999999
Q ss_pred CCCceEEeCCCCCC-CcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCC
Q 038499 397 PNQNIKILGNTSTK-RQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD 475 (609)
Q Consensus 397 ~~p~i~v~~~~~~~-r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~ 475 (609)
++|+++++.+.... ...+++|.+.. +..++.+.|.++ ||.+++|..|.
T Consensus 284 ~~~g~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~l~~~-gi~~~~g~~~~----------- 332 (362)
T 3ffr_A 284 SSKVFSFGVEDAKLRSMTTIVANTTM-------------------LPGEINKILEPF-DMAVGAGYGSK----------- 332 (362)
T ss_dssp HCSSEEESSSCGGGBCSSEEEEEESS-------------------CHHHHHHHHGGG-TEEEEECSGGG-----------
T ss_pred HccCceeccCChhhcCCceEEEecCC-------------------CHHHHHHHHHHC-CeEEecCcccc-----------
Confidence 99999998743222 34455555432 467889999775 99999875442
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.++++|||++.+++++|+++++++|++++
T Consensus 333 ------------------~~~~iRis~~~~~~~e~i~~l~~~l~~~~ 361 (362)
T 3ffr_A 333 ------------------KETQIRIANFPAHSLEQVHKLVQTLKEKI 361 (362)
T ss_dssp ------------------TTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 24899999999999999999999998764
|
| >3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-32 Score=289.96 Aligned_cols=346 Identities=13% Similarity=0.136 Sum_probs=253.5
Q ss_pred CCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhccc
Q 038499 85 ASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE-DAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 85 a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~ 163 (609)
+..+.++.|.+++.+.+.. ..+....+...++++++++++|++++ ++|++| +|+++++. ++..+
T Consensus 9 gp~~~~~~v~~a~~~~~~~----------~~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~-~g~t~al~-~~~~~--- 73 (384)
T 3zrp_A 9 GPTTIKEDVLVAGLENNVG----------FTSKEFVEALAYSLKGLRYVMGASKNYQPLIIP-GGGTSAME-SVTSL--- 73 (384)
T ss_dssp SCSCCCHHHHHHTTCCSCC----------TTSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEE-SCHHHHHH-HGGGG---
T ss_pred CCCCCCHHHHHHhhccccc----------cccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEc-CCcHHHHH-HHHhh---
Confidence 3356677777777554421 12334577889999999999999872 379998 66777787 65544
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEec
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSA 241 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~ 241 (609)
+++|| .|++....|++.. ...+..|++++.++.+.++.+|+++|++++++ .+++++++++
T Consensus 74 ------------~~~gd--~vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~~v~~~~ 135 (384)
T 3zrp_A 74 ------------LKPND--KILVVSNGVFGDRWEQIFKRYPVNVKVLRPSPGDYVKPGEVEEEVRK----SEYKLVALTH 135 (384)
T ss_dssp ------------CCTTC--EEEEECSSHHHHHHHHHHTTSSCEEEEECCSTTCCCCHHHHHHHHHH----SCEEEEEEES
T ss_pred ------------cCCCC--EEEEecCCcchHHHHHHHHHcCCcEEEecCCCCCCCCHHHHHHHHHh----CCCcEEEEeC
Confidence 47888 6888888998742 33456799999999998889999999999984 3799999999
Q ss_pred ccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC
Q 038499 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF 321 (609)
Q Consensus 242 ~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~ 321 (609)
++||||.+.|+++|.++|++||+++|+|++++.+..+.++... +.|++++|+||+++||.|+|++++++++ ++.+
T Consensus 136 ~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~g~~~~~~~~--~~~~ 210 (384)
T 3zrp_A 136 VETSTGVREPVKDVINKIRKYVELIVVDGVSSVGAEEVKAEEW---NVDVYLTASQKALGSAAGLGLLLLSPKA--LSIL 210 (384)
T ss_dssp EETTTTEECCHHHHHHHHGGGEEEEEEECTTTTTTSCCCTTTT---TCSEEEEETTSTTCCCSSEEEEEECHHH--HHHH
T ss_pred CCCCCceECcHHHHHHHHHhcCCEEEEECcccccCcccccccc---CCCEEEecCcccccCCCceEEEEECHHH--HHHh
Confidence 9999999999999999999999999999999998887777654 7899999999999888889999999988 3333
Q ss_pred -CCCccCCCceEeeccccccccccccccc-----ccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 038499 322 -PPSTCGGGTVNYVNGFNEKDTLYLEDIE-----ERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL 395 (609)
Q Consensus 322 -~p~~~ggg~v~~~~~~~~~~~~~~~~~~-----~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L 395 (609)
.+....+ +..+...+..... .....|+++......+..++...+..+.+.+.++.+++++++.+.|
T Consensus 211 ~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L 282 (384)
T 3zrp_A 211 DSQNSIAG--------YYLDLRNWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGL 282 (384)
T ss_dssp HHCCCSCC--------STTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCc--------ccccHHHHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence 2211100 0000011110000 1122357776655433222222245678899999999999999999
Q ss_pred CCCCceEEeCCCCCCCcceE-EEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC
Q 038499 396 LPNQNIKILGNTSTKRQAIL-SFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL 474 (609)
Q Consensus 396 ~~~p~i~v~~~~~~~r~~~~-~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i 474 (609)
+++ +++++.+....+.+.+ +|.+.. .+...+.+.|.++ ||.+++|..|.
T Consensus 283 ~~~-g~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l~~~-gi~v~~g~~~~---------- 332 (384)
T 3zrp_A 283 EAL-GLEIVARRPESYSNTVTGVILKV------------------ADPQKVLAGTVNE-GVEFAPGVHPA---------- 332 (384)
T ss_dssp HHT-TCCBSCSSGGGBCSSEEEEECSS------------------SCHHHHHHHHHTT-TCCCEECCCTT----------
T ss_pred HHC-CCeEccCcccccCccEEEEECCC------------------CCHHHHHHHHHHC-CEEEecCCCCC----------
Confidence 988 8887765312233444 454433 3678899999775 99999775432
Q ss_pred ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 475 DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
.+++||+++.++|++|+++++++|+++++...
T Consensus 333 --------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~~ 364 (384)
T 3zrp_A 333 --------------------FKYFRIGHMGWVTPNDAIIAISVIERTLRKLG 364 (384)
T ss_dssp --------------------CCEEEEECCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred --------------------cCEEEEeccccCCHHHHHHHHHHHHHHHHHcC
Confidence 16899999999999999999999999988753
|
| >3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=288.84 Aligned_cols=361 Identities=14% Similarity=0.095 Sum_probs=257.6
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEV 159 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~ 159 (609)
|+.+.+..+.++.|.+++.+.+.. + ..........++++++++++|.+..++|++++ |+++++..++..
T Consensus 25 ~~~~p~p~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~-gg~~al~~~~~~ 93 (393)
T 3kgw_A 25 LLLGPGPSNLAPRVLAAGSLRMIG-----H-----MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSG-SGHCAMETALFN 93 (393)
T ss_dssp EECSSSCCCCCHHHHHHTTCCCCC-----T-----TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESC-CTTTHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHhcccccC-----c-----ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeC-CcHHHHHHHHHh
Confidence 555555556777777777543311 1 12234567889999999999997654588985 445577777776
Q ss_pred hcccchhhHHHHHHhhhcCCCceEEEECCCCccch--HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEE
Q 038499 160 MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN--LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
+ +++|| .|++..+.|++. ...++..|++++.++.+.++.+|+++|++++++ .+++++
T Consensus 94 ~---------------~~~gd--~vl~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~v 152 (393)
T 3kgw_A 94 L---------------LEPGD--SFLTGTNGIWGMRAAEIADRIGARVHQMIKKPGEHYTLQEVEEGLAQ----HKPVLL 152 (393)
T ss_dssp H---------------CCTTC--EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCSEE
T ss_pred c---------------CCCCC--EEEEEeCCchhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHhh----CCCcEE
Confidence 5 37888 588877777643 455667899999999988889999999999984 279999
Q ss_pred EEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhc
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQ 317 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~ 317 (609)
++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... ++|++++|+||+++||.|+|++++++++.
T Consensus 153 ~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~---~~d~~~~s~sK~~~~~~g~g~~~~~~~~~- 228 (393)
T 3kgw_A 153 FLVHGESSTGVVQPLDGFGELCHRYQCLLLVDSVASLGGVPIYMDQQ---GIDIMYSSSQKVLNAPPGISLISFNDKAK- 228 (393)
T ss_dssp EEESEETTTTEECCCTTHHHHHHHTTCEEEEECTTTTTTSCCCTTTT---TCCEEEEESSSTTCCCSSCEEEEECHHHH-
T ss_pred EEeccCCcchhhccHHHHHHHHHHcCCEEEEECCccccCcccchhhc---CCCEEEecCcccccCCCceeEEEECHHHH-
Confidence 99999999999999999999999999999999999988777776554 78999999999998888899999999873
Q ss_pred cCCCCCCccCCCceEeecccccccccccc-cccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 318 LGSFPPSTCGGGTVNYVNGFNEKDTLYLE-DIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~-~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
+.+.+...++... +.+ .. ....++. ....+...++++......+..++...+..+.+.+.++.+++++++.+.|+
T Consensus 229 -~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 304 (393)
T 3kgw_A 229 -YKVYSRKTKPVSF-YTD-IT-YLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQ 304 (393)
T ss_dssp -HHHHTCSSCCSCS-TTC-HH-HHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHhccCCCCCce-eec-HH-HHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3332221111100 000 00 0000000 01234556777766654433333322456788999999999999999998
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
++ +++++.+....+.+.+.+...+ .. .+..++.+.|.+++||.+++|..|.
T Consensus 305 ~~-g~~~~~~~~~~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~~~gi~v~~g~~~~------------ 355 (393)
T 3kgw_A 305 EM-GLKFFVKDPEIRLPTITTVTVP-AG---------------YNWRDIVSYVLDHFSIEISGGLGPT------------ 355 (393)
T ss_dssp HT-TCCBSSSSGGGBCSSEEEEECC-TT---------------BCHHHHHHHHHHHHCEECBCCCGGG------------
T ss_pred Hc-CCeeccCChhhcCCeEEEEeCC-CC---------------CCHHHHHHHHHHhCCEEEeCCcccC------------
Confidence 88 7877654323445555433333 11 4678899988776799999876332
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
.++++||++ ++.+|++|+++++++|+++++...
T Consensus 356 -----------------~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~~~~ 389 (393)
T 3kgw_A 356 -----------------EERVLRIGLLGYNATTENVDRVAEALREALQHCP 389 (393)
T ss_dssp -----------------TTTEEEEECCGGGCCHHHHHHHHHHHHHHHHHSC
T ss_pred -----------------CCCEEEEEecccCCCHHHHHHHHHHHHHHHHhhh
Confidence 248999998 666799999999999999987653
|
| >3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-32 Score=289.24 Aligned_cols=331 Identities=15% Similarity=0.102 Sum_probs=246.0
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCCCcEE-EeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc--
Q 038499 117 QHTTNMVHEASNYIKKCLGGGQEDAMI-FCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS-- 193 (609)
Q Consensus 117 ~~~~~~~~e~r~~ia~~~g~~~~~~vi-ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-- 193 (609)
....+...++++++++++|.+++ .++ ++ +|+++++..++..+ +++|| .|+++.++|++
T Consensus 40 ~~~~~~~~~l~~~la~~~g~~~~-~~~~~~-~s~t~al~~~~~~l---------------~~~gd--~Vl~~~~~~~~~~ 100 (416)
T 3isl_A 40 PAFTGIMNETMEMLRELFQTKNR-WAYPID-GTSRAGIEAVLASV---------------IEPED--DVLIPIYGRFGYL 100 (416)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCS-EEEEEE-SCHHHHHHHHHHHH---------------CCTTC--EEEEEESSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCC-cEEEec-CcHHHHHHHHHHHh---------------cCCCC--EEEEecCCcccHH
Confidence 34577889999999999999876 555 77 45556788777765 47888 69999999998
Q ss_pred hHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecccc
Q 038499 194 NLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 194 ~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~ 273 (609)
....++..|++++.++.+.++.+|+++|++++++ ++++++++++++||||.+.|+++|.++|++||+++|+|++++
T Consensus 101 ~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~a~~ 176 (416)
T 3isl_A 101 LTEIAERYGANVHMLECEWGTVFDPEDIIREIKK----VKPKIVAMVHGETSTGRIHPLKAIGEACRTEDALFIVDAVAT 176 (416)
T ss_dssp HHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCSEEEEESEETTTTEECCCHHHHHHHHHTTCEEEEECTTT
T ss_pred HHHHHHhcCCeeEEEecCCCCCCCHHHHHHHHhh----CCCcEEEEEccCCCCceecCHHHHHHHHHHcCCEEEEECCcc
Confidence 4445677899999999998899999999999984 378999999999999999999999999999999999999999
Q ss_pred CCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCC---------------CccCCCceEeecccc
Q 038499 274 GPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPP---------------STCGGGTVNYVNGFN 338 (609)
Q Consensus 274 ~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p---------------~~~ggg~v~~~~~~~ 338 (609)
.+..++++... ++|++++|+||+++||.|+|++++++++. +.+.+ ...||..... +.
T Consensus 177 ~~~~~~~~~~~---~~d~~~~s~~K~l~g~~g~g~~~~~~~~~--~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~---~~ 248 (416)
T 3isl_A 177 IGGCEVKVDEW---KIDAAIGGTQKCLSVPSGMAPITYNERVA--DVIAARKKVERGIATQADRAALSGNRPITS---NY 248 (416)
T ss_dssp TTTSCCCTTTT---TCSEEECCSSSTTCCCSSEEEEEECHHHH--HHHHTC------------------CCCCSC---ST
T ss_pred ccCCCcchhhc---CCCEEEecCccccCCCCCeEEEEECHHHH--HHhhccccccccccccccchhccCCCCCCc---cc
Confidence 88888877664 78999999999988898999999999873 23322 1122211100 00
Q ss_pred ccccccccc-ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEE
Q 038499 339 EKDTLYLED-IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSF 417 (609)
Q Consensus 339 ~~~~~~~~~-~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f 417 (609)
.....+... ...++..++++......+..++...+..|.+.+.++.+++++++.+.|+++ +++++.+.......+++|
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~ 327 (416)
T 3isl_A 249 FDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAM-GLRLFGDDSCKMPVVTCV 327 (416)
T ss_dssp TCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT-TCCBCSCGGGBCTTEEEE
T ss_pred cchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc-CCEeccCccccCCcEEEE
Confidence 000001000 134456778777665443333332245578899999999999999999885 888876632112345556
Q ss_pred EeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 418 NIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
.+.. + .+..++.+.|.+++||.+++|.... .+++
T Consensus 328 ~~~~-~----------------~~~~~l~~~L~~~~gi~v~~g~~~~-----------------------------~~~~ 361 (416)
T 3isl_A 328 EIPG-G----------------IDGESVRDMLLAQFGIEIASSFGPL-----------------------------AGKI 361 (416)
T ss_dssp ECCT-T----------------CCHHHHHHHHHHHHCEECBCCCSTT-----------------------------TTTE
T ss_pred eCCC-C----------------CCHHHHHHHHHHhCCEEEecCCCCC-----------------------------CCCE
Confidence 5543 2 4678899999776799999775211 2589
Q ss_pred EEEecCCCCCHHH-HHHHHHHHHHHHHhc
Q 038499 498 TRISFPYYMSNEE-FEFTLEALEFIAIYG 525 (609)
Q Consensus 498 iRls~~~~~t~ee-id~ll~al~~v~~~~ 525 (609)
+||+++.+++++| +++++++|+++++..
T Consensus 362 iRi~~~~~~~~~e~i~~~~~~l~~~~~~~ 390 (416)
T 3isl_A 362 WRIGTMGYSCRKENVLFVLAGLEAVLLRH 390 (416)
T ss_dssp EEEECCGGGCSHHHHHHHHHHHHHHHHHT
T ss_pred EEEecccCCCcHHHHHHHHHHHHHHHHHc
Confidence 9999977777777 999999999998764
|
| >2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-32 Score=286.78 Aligned_cols=352 Identities=17% Similarity=0.148 Sum_probs=251.9
Q ss_pred CceEEecC-CCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHH-HHHHhCCCCCCcEEEeCChHHHHH
Q 038499 76 RRLTYADH-TASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNY-IKKCLGGGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 76 ~~~vyld~-~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~-ia~~~g~~~~~~vift~sGttaal 153 (609)
+.++|+|+ ...++.++.+.+++.+.+.....+.....+..+........+++++ +++++|.+ +|+++ +|+++++
T Consensus 7 ~~~i~ld~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~la~~~~~~---~v~~~-~g~t~a~ 82 (371)
T 2e7j_A 7 KDFINIDPLQTGGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVT-NGAREAK 82 (371)
T ss_dssp -CCEECCHHHHTCCCCHHHHHHHHHC--------------------CCHHHHHHTHHHHHTTSS---EEEEE-SSHHHHH
T ss_pred CCcEEecccccCCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHHHHHHHHcCCC---EEEEe-CChHHHH
Confidence 36899999 5578889999999988775431111100112233445668899999 99999986 78898 7777789
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEe--cCCCCCCCHHHHHHHHhhhccC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIG--LDDDGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~--~~~~g~ld~e~L~~al~~~~~~ 231 (609)
..++.++ +++|| .|+++.++|+++...++..|++++.++ .++++.+|+++|++++++....
T Consensus 83 ~~~~~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~ 145 (371)
T 2e7j_A 83 FAVMHSL---------------AKKDA--WVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKR 145 (371)
T ss_dssp HHHHHHH---------------CCTTC--EEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTT
T ss_pred HHHHHHH---------------hCCCC--EEEEccCcchHHHHHHHHcCCeEEEeecccCCCCCcCHHHHHHHHHhhccc
Confidence 8888876 36888 799999999999999999999999999 8778889999999999743211
Q ss_pred CCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEE
Q 038499 232 KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLM 311 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~ 311 (609)
++++++++++++||||.+.|+++|.++|++||+++|+|++++.+..++++... +.|++++|+||++++|.++|++++
T Consensus 146 ~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~---~~di~~~s~sK~~~~~~~~G~~~~ 222 (371)
T 2e7j_A 146 GEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGM 222 (371)
T ss_dssp SCEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEE
T ss_pred CCeEEEEEECCCCCCcccCCHHHHHHHHHHcCCeEEEECccccCCCCCChhhc---CCCEEEecCCcCCCCCCCcEEEEE
Confidence 37899999999999999999999999999999999999999987765554433 579999999999998888999999
Q ss_pred echhhccCC-CCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHH--HH
Q 038499 312 TKALYQLGS-FPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQE--ET 386 (609)
Q Consensus 312 ~~~~~~l~~-~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~--~~ 386 (609)
++++ ++. +.+...++.. ...++.++++..+.. .+++.+. +. .+.++. ++
T Consensus 223 ~~~~--~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~a~~~~l~~~--~~----~~~~~~~~~~ 276 (371)
T 2e7j_A 223 KEEW--AEIVLRRSEKYKNK------------------EVELLGCTARGATIITLMASFPHV--RE----RIKRWDEEVE 276 (371)
T ss_dssp CTTT--TTTTTCBCSSCTTS------------------BGGGTTCCCCSHHHHHHHHHHHHH--HH----HGGGHHHHHH
T ss_pred echh--hhhhccccccCccc------------------ccccccCCcCHHHHHHHHHHHHHH--HH----HHHHHHHHHH
Confidence 9988 455 5443322111 111235666555443 2344432 21 556667 78
Q ss_pred HHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh
Q 038499 387 YIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 387 l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
+++++.+.|+++ +++++.+.. .+.+++++.+. +...+.+.|.+ .||.+++ ..
T Consensus 277 ~~~~l~~~L~~~-~~~~~~~~~-~~~~~~~~~~~--------------------~~~~~~~~l~~-~gi~~~~-~~---- 328 (371)
T 2e7j_A 277 KARRFAAEMEKL-GIKQLGDNP-HNHDLMFFHAE--------------------VLYEISKKAKG-GRFFLYR-EL---- 328 (371)
T ss_dssp HHHHHHHHHHHT-TCEEESSSS-CCSSEEEEECH--------------------HHHHHHHHSSS-GGGHHHH-HH----
T ss_pred HHHHHHHHHHHc-CcEEecCCC-ccCceEEEECC--------------------CHHHHHHHHHH-CCEEEEe-cc----
Confidence 889999999887 888886531 13455554432 24678888864 6998874 11
Q ss_pred hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE-EecCCC-CCHHHHHHHHHHHHHHHHh
Q 038499 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR-ISFPYY-MSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 467 ~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR-ls~~~~-~t~eeid~ll~al~~v~~~ 524 (609)
.... ..+..++++| ++++.+ ++++|+++++++|++++++
T Consensus 329 ---~~~~----------------~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~~ 369 (371)
T 2e7j_A 329 ---KSRK----------------IHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIEK 369 (371)
T ss_dssp ---HHTT----------------EECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---cccc----------------ccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHHh
Confidence 1000 0011258999 999988 9999999999999998764
|
| >3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=279.44 Aligned_cols=345 Identities=12% Similarity=0.054 Sum_probs=245.2
Q ss_pred CCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 84 TASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 84 ~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
.+..+.++.|.+++.+.+.. | .+......++++++++++++|.+++.+++|..+|+++++..++..+
T Consensus 25 pgp~~~~~~v~~a~~~~~~~-----~-----~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~--- 91 (376)
T 3f0h_A 25 VGPVMSSEEVRAIGAEQVPY-----F-----RTTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC--- 91 (376)
T ss_dssp SSSCCCCHHHHHHHTSCCCC-----C-----SSHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH---
T ss_pred CCCCCCcHHHHHHhcCCCCC-----C-----CCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc---
Confidence 33456677888887664421 1 1233457788999999999999764456663367677888887776
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEec
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSA 241 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~ 241 (609)
+++||+ |++....+++.. ......|++++.++.+.++.+|+++|+++++ ++++++++++
T Consensus 92 ------------~~~gd~--vi~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~-----~~~~~v~~~~ 152 (376)
T 3f0h_A 92 ------------FTKKDK--VLVIDGGSFGHRFVQLCEIHEIPYVALKLEHGKKLTKEKLYEYDN-----QNFTGLLVNV 152 (376)
T ss_dssp ------------CCTTCC--EEEEESSHHHHHHHHHHHHTTCCEEEEECCTTCCCCHHHHHTTTT-----SCCCEEEEES
T ss_pred ------------cCCCCe--EEEEeCChhhHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHhhc-----cCceEEEEec
Confidence 378884 666665555433 2355679999999998888999999999876 6899999999
Q ss_pred ccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC
Q 038499 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF 321 (609)
Q Consensus 242 ~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~ 321 (609)
++||||.+.|+++|.++|++||+++|+|++++.+..++++... ++|++++|+||+++||.|+|++++++++. +.+
T Consensus 153 ~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~~---~~d~~~~s~~K~l~~~~G~g~~~~~~~~~--~~~ 227 (376)
T 3f0h_A 153 DETSTAVLYDTMMIGEFCKKNNMFFVCDCVSAFLADPFNMNEC---GADVMITGSQKVLACPPGISVIVLAPRGV--ERV 227 (376)
T ss_dssp EETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCSEEEEETTTTTCCCSSCEEEEECHHHH--HHH
T ss_pred ccCCcceecCHHHHHHHHHHcCCEEEEEcCccccCcccccccc---CccEEEecCcccccCCCceEEEEECHHHH--HHh
Confidence 9999999999999999999999999999999988777665543 68999999999999888899999999873 233
Q ss_pred CCCccCCCceEeecccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHhCCC
Q 038499 322 PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYI-GHEVIKKQEETYIERALERLLPN 398 (609)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~-g~~~i~~~~~~l~~~~~~~L~~~ 398 (609)
.+....+.. .....+...........++++... +.+++.+. +.. +.+.+.++.+++++++.+.|+++
T Consensus 228 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~~l~~~L~~~ 297 (376)
T 3f0h_A 228 EKSKVRTMY--------FDLKDALKNQERGQTPFTPAVGILLQINERLKEI--KKHGGADAEVARIASQAADFRAKIKDL 297 (376)
T ss_dssp HTCCCCCST--------TCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hcCCCCcee--------ecHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHHHHHHHHHHHc
Confidence 221111100 000011111111122334554332 23444443 334 57889999999999999999987
Q ss_pred CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhH
Q 038499 399 QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQ 478 (609)
Q Consensus 399 p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~ 478 (609)
++++..+. ....++.+.. . + .+...+.+.|.+++||.+++|.. +.
T Consensus 298 -~~~~~~~~--~~~~~~~~~~-~-~----------------~~~~~l~~~l~~~~gi~v~~g~~---~~----------- 342 (376)
T 3f0h_A 298 -PFELVSES--PANGVTSVHP-T-T----------------ANAYDIFLKLKDEYGIWICPNGG---EM----------- 342 (376)
T ss_dssp -SEEECCSS--BBTTEEEEEE-S-S----------------SCHHHHHHHHHHHSSEECEECCG---GG-----------
T ss_pred -CCccCccc--cCceEEEEeC-C-C----------------CCHHHHHHHHHHhCCEEEecCcc---cc-----------
Confidence 67776542 2233344432 2 1 46788999998767999997621 10
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 479 SYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 479 ~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++||+++.++|++|+++++++|+++++.+
T Consensus 343 ---------------~~~~lRis~~~~~t~e~i~~~~~~l~~~l~~~ 374 (376)
T 3f0h_A 343 ---------------KDTIFRVGHIGALTHEDNTTLVNAFKDLQKRN 374 (376)
T ss_dssp ---------------TTTCEEEECCSSCCHHHHHHHHHHHHHHHHTT
T ss_pred ---------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHHhh
Confidence 25899999999999999999999999988754
|
| >2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=278.16 Aligned_cols=343 Identities=13% Similarity=0.085 Sum_probs=248.1
Q ss_pred cCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCChHHHHHHHHHHHh
Q 038499 82 DHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG-QEDAMIFCGSGTTAAIKRLQEVM 160 (609)
Q Consensus 82 d~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~-~~~~vift~sGttaal~~l~~~l 160 (609)
.+.+..+.++.|.+++.+.+. + + .+....+...++++++++++|.+ +.++|++| +|+++++..++..+
T Consensus 4 ~~~gp~~~~~~v~~a~~~~~~----~-~-----~~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t-~g~t~a~~~~~~~~ 72 (353)
T 2yrr_A 4 LTPGPTPIPERVQKALLRPMR----G-H-----LDPEVLRVNRAIQERLAALFDPGEGALVAALA-GSGSLGMEAGLANL 72 (353)
T ss_dssp CSSSSCCCCHHHHGGGGSCCC----C-T-----TCHHHHHHHHHHHHHHHHHHCCCTTCEEEEES-SCHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHhcccc----c-c-----cCHHHHHHHHHHHHHHHHHhCCCCCCceEEEc-CCcHHHHHHHHHHh
Confidence 334445677777777765443 1 2 23345677899999999999986 22378998 67777888887654
Q ss_pred cccchhhHHHHHHhhhcCCCceEEEECCCCccch--HHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEE
Q 038499 161 GIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN--LLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGS 238 (609)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~ 238 (609)
++ | .|+++..+|+++ ...++..|++++.++.++++.+|+++|++++++ .++++++
T Consensus 73 ---------------~~--d--~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~----~~~~~v~ 129 (353)
T 2yrr_A 73 ---------------DR--G--PVLVLVNGAFSQRVAEMAALHGLDPEVLDFPPGEPVDPEAVARALKR----RRYRMVA 129 (353)
T ss_dssp ---------------SC--C--CEEEEECSHHHHHHHHHHHHTTCCEEEEECCTTSCCCHHHHHHHHHH----SCCSEEE
T ss_pred ---------------cC--C--cEEEEcCCCchHHHHHHHHHcCCceEEEeCCCCCCCCHHHHHHHHHh----CCCCEEE
Confidence 23 5 488888899986 233466799999999988888999999999983 2789999
Q ss_pred EecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhcc
Q 038499 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQL 318 (609)
Q Consensus 239 ~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l 318 (609)
+++++||||.+.|+++|.++|++||+++|+|++++.+..++++... +.|++++|+||+++||.|+|++++++++ +
T Consensus 130 ~~~~~nptG~~~~~~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~g~G~~~~~~~~--~ 204 (353)
T 2yrr_A 130 LVHGETSTGVLNPAEAIGALAKEAGALFFLDAVTTLGMLPFSMRAM---GVDYAFTGSQKCLSAPPGLAPIAASLEA--R 204 (353)
T ss_dssp EESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCSEEECCTTSTTCCCSSCEEEEECHHH--H
T ss_pred EEccCCCcceecCHHHHHHHHHHcCCeEEEEcCccccccccccccc---CceEEEecCcccccCCCceEEEEECHHH--H
Confidence 9999999999999999999999999999999999877666554433 5799999999998888889999999988 3
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR--AALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
+.+.. ..+.. .+...+..........++++...... +++..+ +..|.+.+.++.+++++++.+.|+
T Consensus 205 ~~l~~-~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~ 272 (353)
T 2yrr_A 205 KAFTG-KRGWY---------LDLARVAEHWERGGYHHTTPVLLHYALLEALDLV--LEEGVAARERRAREVYAWVLEELK 272 (353)
T ss_dssp HHCCC-CSCST---------TCHHHHHHHHTTCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcc-CCCcc---------ccHHHHhhhhhcCCCCCCCCHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33321 00000 00000000001223356666655433 344443 345788889999999999999998
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
++ +++++.+. .....++++.+.. + .+...+.+.|.++ ||.+++|..|.
T Consensus 273 ~~-g~~~~~~~-~~~~~~~~~~~~~-~----------------~~~~~~~~~l~~~-gi~v~~g~~~~------------ 320 (353)
T 2yrr_A 273 AR-GFRPYPKA-SPLPTVLVVRPPE-G----------------VDADRLVRALYAE-GVAVAGGIGPT------------ 320 (353)
T ss_dssp HT-TCEESCSS-SBCTTEEEEECCT-T----------------CCHHHHHHHHHHT-TEECEECCGGG------------
T ss_pred HC-CCccccCc-cCCCeEEEEECCC-C----------------CCHHHHHHHHHHC-CEEEeCCcccc------------
Confidence 87 88887642 1123344555532 1 4578899999775 99999876542
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHH-HHHHHHHHHHHh
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE-FTLEALEFIAIY 524 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid-~ll~al~~v~~~ 524 (609)
.++++|++++.+++++|++ +++++|+++++.
T Consensus 321 -----------------~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~~ 352 (353)
T 2yrr_A 321 -----------------RGQVLRLGLMGEGARREAYQAFLKALDRALAL 352 (353)
T ss_dssp -----------------TTTCEEEECSGGGSCHHHHHHHHHHHHHHHHC
T ss_pred -----------------CCCeEEEecCccCCHHHHHHHHHHHHHHHHhh
Confidence 1478999998888999999 999999988753
|
| >3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-30 Score=273.66 Aligned_cols=371 Identities=16% Similarity=0.038 Sum_probs=260.5
Q ss_pred CCcchHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHH
Q 038499 46 KSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHE 125 (609)
Q Consensus 46 r~~~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e 125 (609)
+...+.++.++.+++...... ... ...|+.+... +.++.+.+++.+.+...+.++.. .....+...+
T Consensus 7 ~~~~~~~~~~~~l~~~~~~~~-~~~------~~~~~~~~~~-~~~~~v~~a~~~~~~~~~~~~~~-----~~~~~~~~~~ 73 (397)
T 3f9t_A 7 EKGVSEKEILEELKKYRSLDL-KYE------DGNIFGSMCS-NVLPITRKIVDIFLETNLGDPGL-----FKGTKLLEEK 73 (397)
T ss_dssp SSCCCHHHHHHHHHHHHTTSC-CGG------GTCBCSCSCC-CCCTHHHHHHHHHTTCCTTSGGG-----BHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhhccCC-CCC------CCCeEEEecC-CCcHHHHHHHHHHHhhcCCCccc-----ChhHHHHHHH
Confidence 333346777788887654321 111 2247777754 45567888888887655444431 1246788889
Q ss_pred HHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhh--hcCCCceEEEECCCCccchHHHHHHcCc
Q 038499 126 ASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKC--LRDEERWVVFVGPHEHHSNLLSWRQSLA 203 (609)
Q Consensus 126 ~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~--l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (609)
+++++++++|++++ +|++| +|+++++..++.++... +++.-... -.+|| .|+++..+|+++...++..|+
T Consensus 74 l~~~la~~~~~~~~-~i~~~-~ggt~a~~~~~~~~~~~----~~~~~~~~~~~~~gd--~vl~~~~~~~~~~~~~~~~g~ 145 (397)
T 3f9t_A 74 AVALLGSLLNNKDA-YGHIV-SGGTEANLMALRCIKNI----WREKRRKGLSKNEHP--KIIVPITAHFSFEKGREMMDL 145 (397)
T ss_dssp HHHHHHHHTTCTTC-EEEEE-SCHHHHHHHHHHHHHHH----HHHHHHTTCCCCSSC--EEEEETTCCTHHHHHHHHHTC
T ss_pred HHHHHHHHhCCCCC-CEEEe-cCcHHHHHHHHHHHHHH----HHhhhhhcccCCCCe--EEEECCcchhHHHHHHHHcCc
Confidence 99999999999876 89998 56666777777665210 00000000 02366 799999999999999999999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccC--
Q 038499 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDV-- 281 (609)
Q Consensus 204 ~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~-- 281 (609)
+++.++.++++.+|+++|++++++ .+++++++++++||||.+.|+++|.++|++||+++|+|++++.+..+..-
T Consensus 146 ~~~~v~~~~~~~~d~~~l~~~i~~----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~ 221 (397)
T 3f9t_A 146 EYIYAPIKEDYTIDEKFVKDAVED----YDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDK 221 (397)
T ss_dssp EEEEECBCTTSSBCHHHHHHHHHH----SCCCEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGG
T ss_pred eeEEEeeCCCCcCCHHHHHHHHhh----cCCeEEEEECCCCCCCCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccc
Confidence 999999998999999999999983 27899999999999999999999999999999999999998754332110
Q ss_pred ---------CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC---CCCccCCCceEeeccccccccccccccc
Q 038499 282 ---------RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF---PPSTCGGGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 282 ---------~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~---~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (609)
..... ++|++++|+||++++|.++|+++++++.. .+.+ .+...++..
T Consensus 222 ~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~~------------------- 280 (397)
T 3f9t_A 222 YKKKGVNYKFDFSL-GVDSITIDPHKMGHCPIPSGGILFKDIGY-KRYLDVDAPYLTETRQ------------------- 280 (397)
T ss_dssp GCCTTCCCCCSGGG-TCSEEECCTTTTTCCCSSCEEEEESSGGG-GGGTCEECTTSSSSEE-------------------
T ss_pred cccccccccccccc-cCCeEEEccccccCCCCCceEEEEeCHHH-HHhhccCCccccCCCc-------------------
Confidence 01112 67999999999998888899999987652 2222 222222111
Q ss_pred ccccCCCh---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCC
Q 038499 350 ERESGGTP---QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINS 426 (609)
Q Consensus 350 ~r~~~gtp---~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~ 426 (609)
....+++ ++.+ ..+++.++ ...+.+.+.++.+++++++.+.|+++ +++++.+ +..++++|....
T Consensus 281 -~~~~~~~~~~~~~~-~~a~~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~---~~~~~~~~~~~~----- 347 (397)
T 3f9t_A 281 -ATILGTRVGFGGAC-TYAVLRYL--GREGQRKIVNECMENTLYLYKKLKEN-NFKPVIE---PILNIVAIEDED----- 347 (397)
T ss_dssp -CSSCSSCCSHHHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSC---CSSSEEEEECTT-----
T ss_pred -cccccccccchHHH-HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHC-CCEEEcC---CCccEEEEEeCC-----
Confidence 0112332 2222 23334433 34567788888889999999999888 7776655 345666554432
Q ss_pred cCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCC
Q 038499 427 SLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYM 506 (609)
Q Consensus 427 ~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~ 506 (609)
...+.+.|.++ ||.+++|. .++++||+++.++
T Consensus 348 ---------------~~~~~~~l~~~-gi~v~~~~--------------------------------~~~~~Ri~~~~~~ 379 (397)
T 3f9t_A 348 ---------------YKEVCKKLRDR-GIYVSVCN--------------------------------CVKALRIVVMPHI 379 (397)
T ss_dssp ---------------HHHHHHHHHHT-TCBCEECS--------------------------------SSSEEEEECCTTC
T ss_pred ---------------HHHHHHHHHhC-CeEEeccC--------------------------------CCCEEEEEEcCCC
Confidence 56888888765 99988542 1489999999999
Q ss_pred CHHHHHHHHHHHHHHHH
Q 038499 507 SNEEFEFTLEALEFIAI 523 (609)
Q Consensus 507 t~eeid~ll~al~~v~~ 523 (609)
|++|+++++++|+++++
T Consensus 380 ~~e~i~~~~~~l~~~l~ 396 (397)
T 3f9t_A 380 KREHIDNFIEILNSIKR 396 (397)
T ss_dssp CHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHHHhhC
Confidence 99999999999998753
|
| >2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-31 Score=289.72 Aligned_cols=399 Identities=15% Similarity=0.119 Sum_probs=258.5
Q ss_pred cchHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHH
Q 038499 48 ISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEAS 127 (609)
Q Consensus 48 ~~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r 127 (609)
..+.++.++.+++.+... ...+ ...|+++..+++.|..+...+... +.|++...+..+...+++..+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~-----~~~~--~p~~~~~~~~~~~~~~~~~~~l~~----~~n~~~~~~~~s~~~~~le~~~~ 154 (515)
T 2jis_A 86 GESQKQILERCRAVIRYS-----VKTG--HPRFFNQLFSGLDPHALAGRIITE----SLNTSQYTYEIAPVFVLMEEEVL 154 (515)
T ss_dssp CCCHHHHHHHHHHHHHHS-----CCTT--STTEESSSCCCCCHHHHHHHHHHH----HHCCCTTCTTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhcCC-----CCCC--CCCeEEEeeCCCCHHHHHHHHHHH----HhccCCCchhhchHHHHHHHHHH
Confidence 333667777777654321 1122 235999999998888776543332 34665543445667788999999
Q ss_pred HHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhc-CCC----ceEEEECCCCccchHHHHHHcC
Q 038499 128 NYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLR-DEE----RWVVFVGPHEHHSNLLSWRQSL 202 (609)
Q Consensus 128 ~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~-~gd----~~~Vlv~~~~h~s~~~~~~~~G 202 (609)
+++++++|.+++ .++|+++||.+ +..++.++. ++....++ +|+ +.+|+++..+|+++..+++..|
T Consensus 155 ~~la~l~g~~~~-~~~~t~ggtea-~~~al~~ar--------~~~~~~~~~~G~~~~~~~~vl~s~~~h~s~~~~~~~~g 224 (515)
T 2jis_A 155 RKLRALVGWSSG-DGIFCPGGSIS-NMYAVNLAR--------YQRYPDCKQRGLRTLPPLALFTSKECHYSIQKGAAFLG 224 (515)
T ss_dssp HHHHHHHTCSSC-EEEEESSHHHH-HHHHHHHHH--------HHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHTT
T ss_pred HHHHHHhCCCCC-CeEEcCCcHHH-HHHHHHHHH--------HHHhhHHhhcCccccCCeEEEECCCccHHHHHHHHHcC
Confidence 999999999865 89999555554 444433321 10000011 343 4479999999999999999888
Q ss_pred c---eEEEEecCCCCCCCHHHHHHHHhhhccCC-CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc
Q 038499 203 A---EVVEIGLDDDGLLDIEALRSKLELYKDAK-RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE 278 (609)
Q Consensus 203 ~---~vv~v~~~~~g~ld~e~L~~al~~~~~~~-~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~ 278 (609)
. +++.|+.++++.+|+++|+++|++....+ +|++|++++++|+||.+.|+++|+++|++||+++|+|+|++.+...
T Consensus 225 ~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~a~~~~~~~ 304 (515)
T 2jis_A 225 LGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDAAWGGSVLL 304 (515)
T ss_dssp SCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGG
T ss_pred CCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEehhhhhHHHh
Confidence 8 99999998889999999999997532212 5899999999999999999999999999999999999999887765
Q ss_pred cc-----CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech--hhc--cCCCCCCccCCCceEeeccccccccccccccc
Q 038499 279 ID-----VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA--LYQ--LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 279 id-----~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~--~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (609)
.+ +.. ..++|++++|+|||+++|.|+|+++++++ +.. .....+...+++.. +...+.. .+..+ ...
T Consensus 305 ~~~~~~~~~g--~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~-~~~~~~~-~~~~~-~~~ 379 (515)
T 2jis_A 305 SQTHRHLLDG--IQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKF-YDVALDT-GDKVV-QCG 379 (515)
T ss_dssp CTTTGGGGTT--GGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CC-SCGGGCC-GGGCS-CSS
T ss_pred ChhhHhhcCC--CccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCccc-ccccCCC-CCCCC-CCC
Confidence 54 221 13679999999999999999999999987 421 11123333332210 0000000 00000 000
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 350 ERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 350 ~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
+| .+ .+. +.+++..+ ...|++.+.++..++++++.+.|+++|+++++.+ +..++++|...+ ...
T Consensus 380 rr--~~---al~-~~~~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~---~~~~~v~f~~~p-~~~---- 443 (515)
T 2jis_A 380 RR--VD---CLK-LWLMWKAQ--GDQGLERRIDQAFVLARYLVEEMKKREGFELVME---PEFVNVCFWFVP-PSL---- 443 (515)
T ss_dssp CC--CC---HHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSC---CSSSEEEEEECC-GGG----
T ss_pred Cc--cc---HHH-HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC---CCeeEEEEEEeC-ccc----
Confidence 11 11 111 12223322 3456888899999999999999999999999876 356788887754 210
Q ss_pred CCCCCCCCCCCChH-----------HHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEE
Q 038499 430 ENTKTETDKPLHGP-----------FVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWT 498 (609)
Q Consensus 430 ~~~~~~~~~~l~~~-----------~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~i 498 (609)
.+. .+.. .+.+.|.+. |+.. .++. . +.+ .++++
T Consensus 444 ------~~~-~~~~~~~~~l~~~~~~l~~~l~~~-G~~~------~~~~-~-~~~--------------------~~~~l 487 (515)
T 2jis_A 444 ------RGK-QESPDYHERLSKVAPVLKERMVKE-GSMM------IGYQ-P-HGT--------------------RGNFF 487 (515)
T ss_dssp ------TTC-TTSTTHHHHHHTHHHHHHHHHHHH-TSCE------EEEE-E-ETT--------------------EEEEE
T ss_pred ------ccc-ccchhHHHHHHHHHHHHHHHHHhc-CCEE------EEEE-E-ECC--------------------ceEEE
Confidence 000 0111 134444332 4432 1110 0 000 14789
Q ss_pred EEec-CCCCCHHHHHHHHHHHHHHHHh
Q 038499 499 RISF-PYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 499 Rls~-~~~~t~eeid~ll~al~~v~~~ 524 (609)
|+++ ++++|++|+++++++|++++++
T Consensus 488 Ris~~~~~~t~edid~~~~~l~~~~~~ 514 (515)
T 2jis_A 488 RVVVANSALTCADMDFLLNELERLGQD 514 (515)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence 9999 8999999999999999988753
|
| >2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-30 Score=284.03 Aligned_cols=397 Identities=12% Similarity=0.074 Sum_probs=263.0
Q ss_pred CCcchHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHH
Q 038499 46 KSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHE 125 (609)
Q Consensus 46 r~~~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e 125 (609)
....+.++.++.+++.+.... .+++ ...|+|+.++++.++.+.+++..... |++...+..+...+.+..+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~----~~~~--~~~yl~~~~~~~~~~~v~~~~~~~~~----n~~~~~~~~~~~~~~le~~ 144 (497)
T 2qma_A 75 NKNAPLKSVIDDVAELVAKNA----IFTQ--HPDCIAHLHTPPLMPAVAAEAMIAAL----NQSMDSWDQASSATYVEQK 144 (497)
T ss_dssp SCCCCHHHHHHHHHHHTTTTS----CCTT--STTBCSSSCCCCBHHHHHHHHHHHHH----CCCTTCGGGCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcCC----CCCC--CCCeeEeCCCCCcHHHHHHHHHHHhh----cccccchhhChHHHHHHHH
Confidence 344447888888888764221 1233 23599999999999999888876554 3332223344567788888
Q ss_pred HHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhh------hcCC-----CceEEEECCCCccch
Q 038499 126 ASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKC------LRDE-----ERWVVFVGPHEHHSN 194 (609)
Q Consensus 126 ~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~------l~~g-----d~~~Vlv~~~~h~s~ 194 (609)
+++++++++|.++.+.++||++||. ++..++.+. |+..... ..+| ++.+|+++..+|+++
T Consensus 145 ~~~~la~~~g~~~~~~~~~t~ggt~-a~~~al~~a--------r~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~ 215 (497)
T 2qma_A 145 VVNWLCDKYDLSEKADGIFTSGGTQ-SNQMGLMLA--------RDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTV 215 (497)
T ss_dssp HHHHHHHHTTCCTTCEEEEESSHHH-HHHHHHHHH--------HHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHH
T ss_pred HHHHHHHHhCCCCCCCeEEcCCchH-HHHHHHHHH--------HHHHHHhhcccchhhcccccccCCeEEEECCCchHHH
Confidence 9999999999976448999955555 555544432 1110000 0121 233799999999999
Q ss_pred HHHHHHcCc---eEEEEecCCCCCCCHHHHHHHHhhhccCC-CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLSWRQSLA---EVVEIGLDDDGLLDIEALRSKLELYKDAK-RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~~~~~G~---~vv~v~~~~~g~ld~e~L~~al~~~~~~~-~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
..+++..|. +++.||.++++.+|+++|+++|++....+ ++.++++++++|+||.+.|+++|+++|++||+++|+|+
T Consensus 216 ~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~ 295 (497)
T 2qma_A 216 QKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDG 295 (497)
T ss_dssp HHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEeh
Confidence 999988876 89999999899999999999997532111 24488899999999999999999999999999999999
Q ss_pred cccCCcccccCCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccc
Q 038499 271 AASGPYVEIDVRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI 348 (609)
Q Consensus 271 A~~~~~~~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (609)
|++.+....++... ...++|++++|+|||+++|.++|+++++++.. ++.+. .... |..........+.
T Consensus 296 a~~~~~~~~~~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~~~~~-~~~~~---~~~~---yl~~~~~~~~~~~--- 365 (497)
T 2qma_A 296 AYGGALILSSHKSRLKGVERAHSISVDFHKLFYQTISCGALLVNDKSN-FKFLL---HHAD---YLNREHDELPNLV--- 365 (497)
T ss_dssp TTGGGGGGSTTGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEESCGGG-GGGGC---C----------------------
T ss_pred hhhHHHHhCcchHhhcCcccCCEEEEcchhccCCCcceEEEEEeCHHH-HHHhc---CCch---hcCCccccCCCcc---
Confidence 99887765552211 11367999999999999999999999987652 22111 1110 0000000000000
Q ss_pred cccccCCCh--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCC
Q 038499 349 EERESGGTP--QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINS 426 (609)
Q Consensus 349 ~~r~~~gtp--~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~ 426 (609)
....+ ++. ..+. +.+++... ...|++.+.++..++++++.+.|+++|+++++.+ ++.++++|.+.+ ..
T Consensus 366 ~~~~~-~~r~~~al~-~~~~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~---~~~~~v~f~~~~-~~-- 435 (497)
T 2qma_A 366 DKSIA-TTKRFDALK-VFMTMQNV--GPKALGDMYDHLLAQTLEVADMIRTNDQFELLAE---PSLSTVLFRATH-ET-- 435 (497)
T ss_dssp ----C-CSCCCTHHH-HHHHHHHT--CHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECSC---CSSSEEEEEECC-SS--
T ss_pred ccCCC-CCCchhHHH-HHHHHHHh--CHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEEcC---CCceEEEEEEcC-Cc--
Confidence 00000 110 1111 12233322 2345677888899999999999999999999865 357888888765 21
Q ss_pred cCCCCCCCCCCCCCC----hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec
Q 038499 427 SLGENTKTETDKPLH----GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF 502 (609)
Q Consensus 427 ~~~~~~~~~~~~~l~----~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~ 502 (609)
.. ...+.+.|.+ .|+.+.++.... ..+++|+++
T Consensus 436 -------------~~~~~l~~~l~~~l~~-~G~~~~~~~~~~-----------------------------g~~~lRis~ 472 (497)
T 2qma_A 436 -------------ADLDELNKALRLEALT-RGIAVLGETIVD-----------------------------GKTALKFTI 472 (497)
T ss_dssp -------------SCHHHHHHHHHHHHHH-HTSCBCEEEEET-----------------------------TEEEEEEEC
T ss_pred -------------cCHHHHHHHHHHHHHh-CCCEEEEeeEEC-----------------------------CEEEEEEEe
Confidence 11 2345566655 377665321100 137899998
Q ss_pred -CCCCCHHHHHHHHHHHHHHHHh
Q 038499 503 -PYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 503 -~~~~t~eeid~ll~al~~v~~~ 524 (609)
++++|++|+++++++|+++++.
T Consensus 473 ~~~~~t~edi~~~~~~l~~~~~~ 495 (497)
T 2qma_A 473 LNPCLTTSDFESLLSKINMLAVE 495 (497)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHh
Confidence 8999999999999999998765
|
| >2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.7e-29 Score=273.00 Aligned_cols=391 Identities=12% Similarity=-0.011 Sum_probs=262.7
Q ss_pred chHHHHHHHHHhhccCCC-ccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHH
Q 038499 49 SSSEKKLTWLQSQIIGKN-AEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEAS 127 (609)
Q Consensus 49 ~~~~~~~~~~r~~~~g~~-~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r 127 (609)
.+.++.++.+++.+...+ .....|. |+. ++.++.+.+++.+.+.....+ +..+....++.++++
T Consensus 23 ~~~~~v~~~~~~~~~~~~~~~~~~~~------f~~----~~~~~~v~e~~~~a~~~~~~~-----~~~~~~~~~l~~~~~ 87 (452)
T 2dgk_A 23 MRDDVAFQIINDELYLDGNARQNLAT------FCQ----TWDDENVHKLMDLSINKNWID-----KEEYPQSAAIDLRCV 87 (452)
T ss_dssp CCHHHHHHHHHHHGGGSCCCTTBCSC------CSC----CCCCHHHHHHHHHTTTCBTTC-----TTTCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCCCccCCCC------eeC----CCchHHHHHHHHHHhccCCCC-----hhhChhHHHHHHHHH
Confidence 336677788877762111 1122221 221 344567888887766432112 123446778899999
Q ss_pred HHHHHHhCCCCCC----cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC---CceEEEECCCCccchHHHHHH
Q 038499 128 NYIKKCLGGGQED----AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE---ERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 128 ~~ia~~~g~~~~~----~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g---d~~~Vlv~~~~h~s~~~~~~~ 200 (609)
+++++++|.+.+. .+++| +|+++++..++.++.- .++.+ ...+| ++++|+++. .|+++...++.
T Consensus 88 ~~la~l~g~~~~~~~~~~~~~t-~ggtea~~~al~a~~~----~~~~~---~~~~G~~~~~~~vi~~~-~h~~~~~~~~~ 158 (452)
T 2dgk_A 88 NMVADLWHAPAPKNGQAVGTNT-IGSSEACMLGGMAMKW----RWRKR---MEAAGKPTDKPNLVCGP-VQICWHKFARY 158 (452)
T ss_dssp HHHHHHTTCCCCTTSCCEEEEE-SSHHHHHHHHHHHHHH----HHHHH---HHHTTCCCSCCEEEESS-CCHHHHHHHHH
T ss_pred HHHHHHhCCCcccccCCceEEe-CCHHHHHHHHHHHHHH----HHHHH---HHhcCCCCCCcEEEECC-CcHHHHHHHHH
Confidence 9999999998752 48888 5555566655544310 00000 01244 334799999 99999999999
Q ss_pred cCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHh------CCeEEEecccc
Q 038499 201 SLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY------GGFACFDFAAS 273 (609)
Q Consensus 201 ~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~------g~~vivD~A~~ 273 (609)
.|++++.|++++ ++.+|+++|+++|+ ++|++|++++++|+||.+.|+++|+++|++| |+++|+|+|++
T Consensus 159 ~G~~v~~v~~~~~~~~~d~~~l~~~i~-----~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~ 233 (452)
T 2dgk_A 159 WDVELREIPMRPGQLFMDPKRMIEACD-----ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASG 233 (452)
T ss_dssp TTCEEEECCCBTTBCSCCHHHHHHHCC-----TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTG
T ss_pred cCceEEEEecCCCCCeECHHHHHHHHh-----hCCEEEEEEcCCcCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccH
Confidence 999999999987 78999999999998 5799999999999999999999999999996 99999999988
Q ss_pred CCcc-------cccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech-hhccCCC--CCCccCCCceEeeccccccccc
Q 038499 274 GPYV-------EIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA-LYQLGSF--PPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 274 ~~~~-------~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~-~~~l~~~--~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
.+.. +.++. ..++|++++++|||+++|.++|+++++++ .. .+.+ .+.+.++...
T Consensus 234 ~~~~~~~~~~~~~~~~---~~~~d~~~~~~hK~~~~~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~------------ 297 (452)
T 2dgk_A 234 GFLAPFVAPDIVWDFR---LPRVKSISASGHKFGLAPLGCGWVIWRDEEAL-PQELVFNVDYLGGQIG------------ 297 (452)
T ss_dssp GGTHHHHCTTCCCSTT---STTEEEEEEETTTTTCCCSSCEEEEESSGGGS-CGGGCEEECCTTCCEE------------
T ss_pred HHHHHhhCccchhhcC---CCCCcEEEECcccccCCCCCeEEEEEcCHHHH-HHHhccCccccCCCCC------------
Confidence 6543 12332 24789999999999988999999999765 31 0111 1222222110
Q ss_pred ccccccccccCCChhHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC-CCCcceEEEEec
Q 038499 344 YLEDIEERESGGTPQVIQ--MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTS-TKRQAILSFNIH 420 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~--~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~-~~r~~~~~f~~~ 420 (609)
.....++..... ...+++..+ ...|++.+.++..++++++.+.|+++++++++.+.. ....++++|.+.
T Consensus 298 ------~~~~~~~r~~~~~~~~~aal~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~~~~v~f~~~ 369 (452)
T 2dgk_A 298 ------TFAINFSRPAGQVIAQYYEFLRL--GREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLK 369 (452)
T ss_dssp ------ECCSCCSCBCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECCTTTBSSEEEEEEC
T ss_pred ------CcccCCCChhHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCCCCCCeEEEEEEec
Confidence 000112222111 122333333 335678888999999999999999998899986421 146788888876
Q ss_pred cCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEE
Q 038499 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRI 500 (609)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRl 500 (609)
+ .. ...++...+.+.|.+ .||.++.. ..|.. +. ..+++|+
T Consensus 370 ~-~~------------~~~~~~~~l~~~L~~-~Gi~v~~~---~~~~~--~~---------------------~~~~lRi 409 (452)
T 2dgk_A 370 D-GE------------DPGYTLYDLSERLRL-RGWQVPAF---TLGGE--AT---------------------DIVVMRI 409 (452)
T ss_dssp T-TC------------CCSCCHHHHHHHHHH-TTCBCCEE---ECSTT--CT---------------------TCEEEEE
T ss_pred C-cc------------cccCCHHHHHHHHHh-cCCeeeee---eCCcc--cC---------------------CeEEEEE
Confidence 4 21 011345789999976 59987742 21210 00 1469999
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhcccccCCC
Q 038499 501 SFPYYMSNEEFEFTLEALEFIAIYGQRFLPLY 532 (609)
Q Consensus 501 s~~~~~t~eeid~ll~al~~v~~~~~~~~p~y 532 (609)
+++.++|++|+++++++|+++++...+.-+.+
T Consensus 410 s~~~~~t~e~id~li~~l~~~~~~~~~~~~~~ 441 (452)
T 2dgk_A 410 MCRRGFEMDFAELLLEDYKASLKYLSDHPKLQ 441 (452)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHHHHCGGGT
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999987765543444
|
| >1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.3e-30 Score=269.67 Aligned_cols=319 Identities=11% Similarity=0.046 Sum_probs=231.1
Q ss_pred HHHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHH
Q 038499 121 NMVHEASNYIKKCLGGGQE-DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSW 198 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~ 198 (609)
....++++++++++|.+.+ ++++++ +|+++++..++.++ +++||+ +|++++.+|++. ....
T Consensus 37 ~~~~~l~~~la~~~g~~~~~~~v~~~-~g~t~a~~~~~~~~---------------~~~gd~-vi~~~~~~~~~~~~~~~ 99 (366)
T 1m32_A 37 GVVEQIRQQLTALATASEGYTSVLLQ-GSGSYAVEAVLGSA---------------LGPQDK-VLIVSNGAYGARMVEMA 99 (366)
T ss_dssp TTHHHHHHHHHHHHCSSSSEEEEEEE-SCHHHHHHHHHHHS---------------CCTTCC-EEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcCcEEEEe-cChHHHHHHHHHHh---------------cCCCCe-EEEEeCCCccHHHHHHH
Confidence 5678899999999993211 268998 67777888888776 367774 455666777763 3456
Q ss_pred HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc
Q 038499 199 RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE 278 (609)
Q Consensus 199 ~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~ 278 (609)
+..|++++.++.+.++.+|+++|++++++. .+++++++++++||||.+.|+++|.++|++||+++|+|++++.+..+
T Consensus 100 ~~~g~~~~~v~~~~~~~~d~~~l~~~l~~~---~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~ 176 (366)
T 1m32_A 100 GLMGIAHHAYDCGEVARPDVQAIDAILNAD---PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDAMSSFGGIP 176 (366)
T ss_dssp HHHTCCEEEEECCTTSCCCHHHHHHHHHHC---TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEECTTTTTTSC
T ss_pred HHhCCceEEEeCCCCCCCCHHHHHHHHhcC---CCeEEEEEecccCCcceecCHHHHHHHHHHcCCEEEEECCccccCcC
Confidence 678999999999888889999999999852 25889999999999999999999999999999999999999988777
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccc--cccccCCC
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI--EERESGGT 356 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~--~~r~~~gt 356 (609)
+++... +.|++++|+||+++||.|+|++++++++ ++.+.+...+. ..+....+... ......++
T Consensus 177 ~~~~~~---~~di~~~s~~K~~~~~~g~G~~~~~~~~--~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~ 242 (366)
T 1m32_A 177 MDIAAL---HIDYLISSANKCIQGVPGFAFVIAREQK--LAACKGHSRSL---------SLDLYAQWRCMEDNHGKWRFT 242 (366)
T ss_dssp CCTTTT---TCSEEEEESSSTTCCCSSEEEEEEEHHH--HTTCTTCCSCS---------TTCHHHHHHHHHHTTTCCSSC
T ss_pred cccccc---CccEEEecCcccccCCCceEEEEECHHH--HHhhcCCCCCc---------cccHHHHHhhhcccCCCCCCC
Confidence 766543 6899999999999888889999999988 44543321000 00000000000 00111245
Q ss_pred hhHHHHH--HHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcc-eEEEEeccCCCCCcCCCCC
Q 038499 357 PQVIQMI--RAALAFWVKEYIG-HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA-ILSFNIHSSTINSSLGENT 432 (609)
Q Consensus 357 p~i~~~~--~aal~~~~~~~~g-~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~ 432 (609)
++..... .+++..+ +..| ++.+.++.+++++++.+.|+++ +++++.+. ..+.+ ++++.+.. .
T Consensus 243 ~~~~~~~a~~~al~~~--~~~g~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~-~~~~~~~~~~~~~~-~--------- 308 (366)
T 1m32_A 243 SPTHTVLAFAQALKEL--AKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDD-ELHSPIITAFYSPE-D--------- 308 (366)
T ss_dssp CCHHHHHHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCG-GGBCSSEEEEECCC-C---------
T ss_pred CCHHHHHHHHHHHHHH--HHccCHhHHHHHHHHHHHHHHHHHHHC-CCeeccCc-hhcCceEEEEEcCc-c---------
Confidence 5554433 3444443 3345 7888899999999999999887 77776542 12455 44444431 0
Q ss_pred CCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHH
Q 038499 433 KTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512 (609)
Q Consensus 433 ~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid 512 (609)
...+...+.+.|.++ ||.+++|..|. ++++|++++.+++++|++
T Consensus 309 -----~~~~~~~~~~~l~~~-gi~v~~~~~~~------------------------------~~~iRi~~~~~~~~~~i~ 352 (366)
T 1m32_A 309 -----PQYRFSEFYRRLKEQ-GFVIYPGKVSQ------------------------------SDCFRIGNIGEVYAADIT 352 (366)
T ss_dssp -----TTCCHHHHHHHHHHT-TEECEECCCSS------------------------------SCEEEEECCSSCCHHHHH
T ss_pred -----CCCCHHHHHHHHHHC-CEEEECCcCCC------------------------------CCEEEEecCCCCCHHHHH
Confidence 014577899988765 99999876552 479999999999999999
Q ss_pred HHHHHHHHHHH
Q 038499 513 FTLEALEFIAI 523 (609)
Q Consensus 513 ~ll~al~~v~~ 523 (609)
+++++|+++++
T Consensus 353 ~~~~~l~~~~~ 363 (366)
T 1m32_A 353 ALLTAIRTAMY 363 (366)
T ss_dssp HHHHHHHHHCT
T ss_pred HHHHHHHHHHH
Confidence 99999998764
|
| >2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.1e-29 Score=277.83 Aligned_cols=415 Identities=13% Similarity=0.089 Sum_probs=263.8
Q ss_pred CCCcchHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHH
Q 038499 45 PKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVH 124 (609)
Q Consensus 45 ~r~~~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~ 124 (609)
+....+.++.++.+++.+... .+.+. ..|+++..++..+..+...+.... .|++...+..+...+.+..
T Consensus 67 p~~~~~~~~~~~~~~~~~~~~-----~~~~~--p~~~~~~~~~~~~~~~~~~~l~~~----~n~~~~~~~~~~~~~~le~ 135 (504)
T 2okj_A 67 SDHPESLEQILVDCRDTLKYG-----VRTGH--PRFFNQLSTGLDIIGLAGEWLTST----ANTNMFTYEIAPVFVLMEQ 135 (504)
T ss_dssp CSSCCCHHHHHHHHHHHHHTS-----CCTTC--TTEESSSSCCCCHHHHHHHHHHHH----HCCBSSCTTTCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHhhcc-----CCCCC--CCEEEEccCCCCHHHHHHHHHHHh----hccCCCchhhChHHHHHHH
Confidence 333444677888887755422 12222 249999988888876644332222 2443322344556678888
Q ss_pred HHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhc-ccchhhHHHHHHhhhcCC----CceEEEECCCCccchHHH
Q 038499 125 EASNYIKKCLGGG--QEDAMIFCGSGTTAAIKRLQEVMG-IAVPSILREKLIKCLRDE----ERWVVFVGPHEHHSNLLS 197 (609)
Q Consensus 125 e~r~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~-~~~~~~~~~~~~~~l~~g----d~~~Vlv~~~~h~s~~~~ 197 (609)
++++++++++|.+ ++ .++||++|| +++..++.++. ...+.. .++| ++.+|+++..+|+++..+
T Consensus 136 ~~~~~la~~~g~~~~~~-~~~~t~ggt-ea~~~al~~~~~~~~~~~--------~~~G~~~~~~~~v~~s~~~h~s~~~~ 205 (504)
T 2okj_A 136 ITLKKMREIVGWSSKDG-DGIFSPGGA-ISNMYSIMAARYKYFPEV--------KTKGMAAVPKLVLFTSEQSHYSIKKA 205 (504)
T ss_dssp HHHHHHHHHHTCCSSSC-EEEEESSHH-HHHHHHHHHHHHHHCTTH--------HHHCGGGSCCEEEEEETTSCTHHHHH
T ss_pred HHHHHHHHHhCCCCCCC-CEEEeCCcH-HHHHHHHHHHHHHHhhHH--------hhcCccccCCeEEEECCcchHHHHHH
Confidence 8999999999998 44 899995555 45555544431 000000 0123 234799999999999999
Q ss_pred HHHcCc---eEEEEecCCCCCCCHHHHHHHHhhhccCC-CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecccc
Q 038499 198 WRQSLA---EVVEIGLDDDGLLDIEALRSKLELYKDAK-RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 198 ~~~~G~---~vv~v~~~~~g~ld~e~L~~al~~~~~~~-~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~ 273 (609)
++..|. +++.|+.++++.+|+++|+++|++....+ +|++|++++++|+||.+.|+++|+++|++||+++|+|+|++
T Consensus 206 ~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhvD~a~~ 285 (504)
T 2okj_A 206 GAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWG 285 (504)
T ss_dssp HHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTG
T ss_pred HHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEehhhh
Confidence 988776 89999998899999999999997532212 58899999999999999999999999999999999999988
Q ss_pred CCccc-----ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEech-hhc--cCCCCCCccCCCceEeeccccccccccc
Q 038499 274 GPYVE-----IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKA-LYQ--LGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 274 ~~~~~-----id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~-~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
.+... ..+.. ..++|++++++|||+++|.++|+++++++ +.. +....+...+++.... ...+...+.
T Consensus 286 ~~~~~~~~~~~~~~g--~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~ 360 (504)
T 2okj_A 286 GGLLMSRKHRHKLNG--IERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYD---VSYDTGDKA 360 (504)
T ss_dssp GGGGGCTTTGGGGTT--GGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSC---GGGCCGGGS
T ss_pred hHHHhCHhhHhhcCC--cccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCccccc---CcCCcccCC
Confidence 76543 22221 13679999999999999999999999874 421 1123344333322000 000000000
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCC
Q 038499 346 EDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTIN 425 (609)
Q Consensus 346 ~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~ 425 (609)
-...+| .++..+ .+++..+ ...|++.+.++..++++++.+.|+++|+++++.+. .+..++++|...+ ...
T Consensus 361 ~~~~rr--~~~l~~----~a~l~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~p~~~~v~f~~~~-~~~ 430 (504)
T 2okj_A 361 IQCGRH--VDIFKF----WLMWKAK--GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNG-EPEHTNVCFWYIP-QSL 430 (504)
T ss_dssp SCSSCB--CCHHHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSS-CCSSSCEEEEECC-GGG
T ss_pred CCCCCC--ccHHHH----HHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecC-CCCeEEEEEEEeC-ccc
Confidence 000111 222222 2223322 23467888899999999999999999999998731 2467888888755 210
Q ss_pred CcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC-C
Q 038499 426 SSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP-Y 504 (609)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~-~ 504 (609)
...+....-..........+.+.|.+. |+.+.++..+. + .++++|++++ +
T Consensus 431 ~~~~~~~~~~~~~~~~~~~l~~~L~~~-G~~~~~~~~~~--------~--------------------~~~~lRis~~~~ 481 (504)
T 2okj_A 431 RGVPDSPQRREKLHKVAPKIKALMMES-GTTMVGYQPQG--------D--------------------KANFFRMVISNP 481 (504)
T ss_dssp SSCCCCHHHHHHHTTHHHHHHHHHHHH-TSCEEEEEEET--------T--------------------EEEEEEECCCCT
T ss_pred cccccchhhHHHHHHHHHHHHHHHHhC-CcEEEEeeEEC--------C--------------------ceEEEEEEeCCC
Confidence 000000000000000134677777664 75433211100 0 1368999995 9
Q ss_pred CCCHHHHHHHHHHHHHHHHh
Q 038499 505 YMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 505 ~~t~eeid~ll~al~~v~~~ 524 (609)
++|++|+++++++|+++++.
T Consensus 482 ~~t~edi~~~~~~l~~~~~~ 501 (504)
T 2okj_A 482 AATQSDIDFLIEEIERLGQD 501 (504)
T ss_dssp TCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999998765
|
| >2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.7e-30 Score=272.08 Aligned_cols=344 Identities=11% Similarity=0.070 Sum_probs=242.2
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCC---CchhhHHHHHHHHHHHHHHHHHhCCCCCCcE-EEeCChHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTC---DSYVGQHTTNMVHEASNYIKKCLGGGQEDAM-IFCGSGTTAAI 153 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~---~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~v-ift~sGttaal 153 (609)
.+|+|+.+..+.|+.|.+++.+.+.... +.... ....+....+.++++++.+++++|++++.++ ++| +|+++++
T Consensus 4 ~~~l~~~~~~~~~~~v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t-~g~t~a~ 81 (362)
T 2c0r_A 4 RAYNFNAGPAALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQ-GGASTQF 81 (362)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEES-SHHHHHH
T ss_pred ceeeccCCCCCCCHHHHHHHHHHHhhhh-hcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEEC-CCchHHH
Confidence 4799999999999999999999886543 32211 1113445667889999999999999753254 565 7888899
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch--HHHHHHcCceEEEEecCC---CC-CCCHHHHHHHHhh
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN--LLSWRQSLAEVVEIGLDD---DG-LLDIEALRSKLEL 227 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~--~~~~~~~G~~vv~v~~~~---~g-~ld~e~L~~al~~ 227 (609)
+.++..+ +++|| .|++....|++. ....+..| +++.++.+. .+ .+|+++++ ++
T Consensus 82 ~~~~~~l---------------~~~gd--~vl~~~~~~~~~~~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~- 140 (362)
T 2c0r_A 82 AMIPMNF---------------LKEGQ--TANYVMTGSWASKALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQ- 140 (362)
T ss_dssp HHHHHHH---------------CCTTC--EEEEEECSHHHHHHHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CC-
T ss_pred HHHHHhc---------------CCCCC--eEEEEecCcHhHHHHHHHHHhC-CeEEEecccccccccCCCHHHcc--cC-
Confidence 9888876 47888 566655555553 23445679 999998862 22 35666654 54
Q ss_pred hccCCCceEEEEecccCccccc-cCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCc
Q 038499 228 YKDAKRPILGSFSACSNVTGIY-SDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSP 306 (609)
Q Consensus 228 ~~~~~~~~lv~~s~~sn~TG~~-~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~ 306 (609)
++|+++++++++|+||.+ .|+++| ||+++++|++|+.+..++++.. .|++++|+||++| |.|+
T Consensus 141 ----~~t~~v~~~~~~n~tG~~~~~l~~i------~~~~vivD~a~~~~~~~~~~~~-----~d~~~~s~~K~~g-~~G~ 204 (362)
T 2c0r_A 141 ----DNAAYLHLTSNETIEGAQFKAFPDT------GSVPLIGDMSSDILSRPFDLNQ-----FGLVYAGAQKNLG-PSGV 204 (362)
T ss_dssp ----TTEEEEEEESEETTTTEECSSCCCC------TTSCEEEECTTTTTSSCCCGGG-----CSEEEEETTTTTC-CSSC
T ss_pred ----CCcCEEEEeCCcCccceeccccccc------CCCEEEEEChhhccCCccchhH-----CcEEEEecccccc-CcCc
Confidence 689999999999999995 778877 8999999999999887776643 3999999999997 7789
Q ss_pred EEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhc-CHHHHHHHHH
Q 038499 307 GILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYI-GHEVIKKQEE 385 (609)
Q Consensus 307 G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~-g~~~i~~~~~ 385 (609)
|++++++++ ++.+.+..+ .. ..+..........+|++......+..++...+.. +.+.+.++.+
T Consensus 205 G~l~~~~~~--~~~l~~~~~--~~-----------~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~ 269 (362)
T 2c0r_A 205 TVVIVREDL--VAESPKHLP--TM-----------LRYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANR 269 (362)
T ss_dssp EEEEEEGGG--SSSCCTTSC--GG-----------GCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEEEEcHHH--HhhccccCc--hH-----------HhHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999998 445543211 00 0000000112334677765544333333222344 6889999999
Q ss_pred HHHHHHHHHhCCCCce-EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 386 TYIERALERLLPNQNI-KILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i-~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
++++++.+.|++++++ +++.+......++++|.+.. + .+..++++.|.+ .||.+++|..|
T Consensus 270 ~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~~~~~L~~-~gi~~~~g~~~- 330 (362)
T 2c0r_A 270 KKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLAS-E----------------ELEKEFVKASEQ-EGFVGLKGHRS- 330 (362)
T ss_dssp HHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSC-H----------------HHHHHHHHHHHH-TTEESCBCCTT-
T ss_pred HHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcCC-c----------------chHHHHHHHHHH-CCCeeccCCCC-
Confidence 9999999999988646 77653211234566665542 1 246788888855 59988765422
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+++|||++.+++++|+++++++|+++++.
T Consensus 331 ------------------------------~~~iRis~~~~~~~e~i~~l~~~l~~~~~~ 360 (362)
T 2c0r_A 331 ------------------------------VGGLRASIYNAVPYESCEALVQFMEHFKRS 360 (362)
T ss_dssp ------------------------------TCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 257999999999999999999999998753
|
| >3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=269.89 Aligned_cols=382 Identities=14% Similarity=0.075 Sum_probs=263.4
Q ss_pred HHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHH
Q 038499 51 SEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYI 130 (609)
Q Consensus 51 ~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~i 130 (609)
.++..+.+++.+... |. +..++....+++.++.+.+++.+.+...+.+++ ......++..++++++
T Consensus 39 ~~~~~~~~~~~i~l~--------gn-p~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~-----~~p~~~~le~~~~~~l 104 (502)
T 3hbx_A 39 KEAAYQIINDELMLD--------GN-PRLNLASFVTTWMEPECDKLIMSSINKNYVDMD-----EYPVTTELQNRCVNMI 104 (502)
T ss_dssp HHHHHHHHHHHGGGS--------CC-GGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCTT-----TCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--------CC-CCceeccccCCCCCHHHHHHHHHHhccCCCChh-----cChhHHHHHHHHHHHH
Confidence 566677777665321 11 223444444466778888988887765444332 2234678888999999
Q ss_pred HHHhCCC--CCC--cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCC---ceEEEECCCCccchHHHHHHcCc
Q 038499 131 KKCLGGG--QED--AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE---RWVVFVGPHEHHSNLLSWRQSLA 203 (609)
Q Consensus 131 a~~~g~~--~~~--~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~~~~h~s~~~~~~~~G~ 203 (609)
++++|++ +++ ..++| +|+++++..++.++... +..+. ..+|+ ++.|+++..+|+++...++..|+
T Consensus 105 a~l~g~~~~~~~~~~g~~t-~ggtea~~~a~~a~~~~----~~~~~---~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~ 176 (502)
T 3hbx_A 105 AHLFNAPLEEAETAVGVGT-VGSSEAIMLAGLAFKRK----WQNKR---KAEGKPVDKPNIVTGANVQVCWEKFARYFEV 176 (502)
T ss_dssp HHHTTCCCCSSCCCEEEEE-SSHHHHHHHHHHHHHHH----HHHHH---HHTTCCCSCCEEEEETTCCHHHHHHHHHTTC
T ss_pred HHHhCCCcccccCCcceec-CcHHHHHHHHHHHHHHH----HhHHH---HhcCCCCCCcEEEEcCCchHHHHHHHHHcCc
Confidence 9999998 432 22357 45555665554443210 00000 01233 34799999999999999999999
Q ss_pred eEEEEecCCC-CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHh------CCeEEEeccccCCc
Q 038499 204 EVVEIGLDDD-GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY------GGFACFDFAASGPY 276 (609)
Q Consensus 204 ~vv~v~~~~~-g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~------g~~vivD~A~~~~~ 276 (609)
+++.|+++++ +.+|+++|+++|+ ++|++|++++++|+||.+.|+++|+++|+++ |+++|+|+|++.+.
T Consensus 177 ~~~~v~~~~~~~~~d~~~l~~~i~-----~~t~~v~~~~~~n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~ 251 (502)
T 3hbx_A 177 ELKEVKLSEGYYVMDPQQAVDMVD-----ENTICVAAILGSTLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFI 251 (502)
T ss_dssp EEEEECCBTTBCSCCHHHHHHHCC-----TTEEEEEEEBSCTTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGT
T ss_pred eeEEEecCCCcCcCCHHHHHHHHh-----hCCEEEEEecCCCCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchh
Confidence 9999999875 8999999999998 6799999999999999999999999999999 99999999987432
Q ss_pred -------ccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCC---CCCCccCCCceEeecccccccccccc
Q 038499 277 -------VEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGS---FPPSTCGGGTVNYVNGFNEKDTLYLE 346 (609)
Q Consensus 277 -------~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~---~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (609)
.+.++. ..++|++++++|||+++|.|+|++++++... +.. ..+.+.++....+
T Consensus 252 ~p~~~~~~~~~~~---~~~~D~v~~s~hK~l~~p~g~G~~~~~~~~~-l~~~~~~~~~yl~~~~~~~------------- 314 (502)
T 3hbx_A 252 APFLYPELEWDFR---LPLVKSINVSGHKYGLVYAGIGWVIWRNKED-LPEELIFHINYLGADQPTF------------- 314 (502)
T ss_dssp HHHHCTTCCCSTT---STTEEEEEEETTTTTCCCSSCEEEEESSGGG-SCGGGCEEECSSSSCEEEC-------------
T ss_pred hhhhCcccccccC---CCCceEEEECcccccCCCCCeEEEEEeCHHH-hhHHhccCcccccCCCCCc-------------
Confidence 233333 2488999999999999999999999976431 111 1112222221100
Q ss_pred cccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCC
Q 038499 347 DIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424 (609)
Q Consensus 347 ~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~ 424 (609)
...++.+.... ..+++..+ ...|++.+.++..++++++.+.|+++++++++.+ .+..++++|.+.+ +.
T Consensus 315 -----~~~~sr~~~~~~a~~~al~~l--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~--~~~~~~v~f~~~~-~~ 384 (502)
T 3hbx_A 315 -----TLNFSKGSSQVIAQYYQLIRL--GHEGYRNVMENCRENMIVLREGLEKTERFNIVSK--DEGVPLVAFSLKD-SS 384 (502)
T ss_dssp -----CSCCSCBSHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSC--SSSSSEEEEEESS-CS
T ss_pred -----cccCCchHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeC--CCCceEEEEEecC-CC
Confidence 01122221111 22333332 3446788888999999999999999988999865 2467899998865 21
Q ss_pred CCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCC
Q 038499 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPY 504 (609)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~ 504 (609)
.++...+.+.|.+ .||.++. |..|... . ...++||+++.
T Consensus 385 --------------~~~~~~l~~~L~~-~Gi~v~~---~~~p~~~--~---------------------~~~~lRisv~~ 423 (502)
T 3hbx_A 385 --------------CHTEFEISDMLRR-YGWIVPA---YTMPPNA--Q---------------------HITVLRVVIRE 423 (502)
T ss_dssp --------------SCCHHHHHHHHHT-TTCBCCE---EECCTTC--T---------------------TCEEEEEECCT
T ss_pred --------------cCCHHHHHHHHHh-CCcEEee---ccCCccc--C---------------------CceEEEEEeCC
Confidence 1456689999966 5998863 2212110 0 13789999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhccc
Q 038499 505 YMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 505 ~~t~eeid~ll~al~~v~~~~~~ 527 (609)
.+|++|++.++++|+++++...+
T Consensus 424 ~~t~edid~li~~L~~~l~~l~~ 446 (502)
T 3hbx_A 424 DFSRTLAERLVIDIEKVMRELDE 446 (502)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999876654
|
| >2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=289.53 Aligned_cols=362 Identities=14% Similarity=0.025 Sum_probs=248.0
Q ss_pred HHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCC-------C--CchhhHHHHHH
Q 038499 52 EKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHT-------C--DSYVGQHTTNM 122 (609)
Q Consensus 52 ~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~-------~--~~~~~~~~~~~ 122 (609)
++.+..+|++|+..+ ..+|+|++++|+.++.|.+++....-..+.++.. . ....+....++
T Consensus 65 ~~~i~~~~~~~~~~~----------~~~yld~aa~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (456)
T 2z67_A 65 DEKIKLFLKFLSMMD----------TDKDPKSVRIGEREARTYSKIHEELSSGFCHGIGRSGNLVDPQPKASGASIMYAL 134 (456)
T ss_dssp HHHHHHHHHHHHTTB----------GGGCTTCEECSSCCCCCSCHHHHHHTTTCTTCBSBTTBTTSCCTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcc----------ccccccccccccccccccccccCccccccCCCccHHHHHHhhCcccccCcHHHHH
Confidence 455677888887654 4689999999999998888876532111122111 0 01122246788
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL 202 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (609)
.+++++++++++|++++ ++||++||..++...+..+. .+.+++ +|+++..+|++....++..|
T Consensus 135 ~~~~~~~la~~~g~~~~--~~~t~g~te~a~~~al~~~~-------------~~~~~~--~vi~~~~~h~s~~~~~~~~G 197 (456)
T 2z67_A 135 TNKILESFFKQLGLNVH--AIATPISTGMSISLCLSAAR-------------KKYGSN--VVIYPYASHKSPIKAVSFVG 197 (456)
T ss_dssp HHHHHHHHHHHTTCCCE--EEEESSCHHHHHHHHHHHHH-------------HHHCCC--EEEEECCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCCCC--EEEeCcHHHHHHHHHHHHHH-------------HhcCCC--EEEEECCCcHHHHHHHHHcC
Confidence 89999999999999764 88984444244332322221 012444 68888889999988888899
Q ss_pred ceEEEEec---CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc---
Q 038499 203 AEVVEIGL---DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY--- 276 (609)
Q Consensus 203 ~~vv~v~~---~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~--- 276 (609)
++++.++. ++++.+|+++|+++|++....+++.++++++++|+||.+.|+++|+++|++||+++|+|+|++...
T Consensus 198 ~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~ 277 (456)
T 2z67_A 198 MNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYY 277 (456)
T ss_dssp CEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred CCceEEEEeccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHh
Confidence 99999987 667899999999999321111367888899999999999999999999999999999998866433
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccCC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG 355 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~g 355 (609)
.+.+...+.. ++|++++|+|||+++|.|+|+++++ +++ +..+.+.+.|+. .+
T Consensus 278 ~~~~~~~~~~-~~D~~~~s~hK~~~~p~g~G~l~~~~~~~--~~~l~~~~~g~~------------------------~~ 330 (456)
T 2z67_A 278 LEKLKKAFKY-RVDAVVSSSDKNLLTPIGGGLVYSTDAEF--IKEISLSYPGRA------------------------SA 330 (456)
T ss_dssp HHHHHHHHTS-CCSEEEEEHHHHHCCCSSCEEEEESCHHH--HHHHHTTSCSCB------------------------CS
T ss_pred hHHHHHhhCC-CCCEEEEcCCCCcCCCCCeEEEEEcCHHH--HhhcCcCCCCCC------------------------CC
Confidence 3343322211 6899999999999889999999995 455 223333332221 12
Q ss_pred ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCC
Q 038499 356 TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ---NIKILGNTSTKRQAILSFNIHSSTINSSLGENT 432 (609)
Q Consensus 356 tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~ 432 (609)
++ .+. ..+++... ...|++.+.++..++++++.+.|++++ ++.++.+ . ++++|.+.. +.
T Consensus 331 ~~-~~~-~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~v~~~----~-~~v~~~~~~-~~-------- 392 (456)
T 2z67_A 331 TP-VVN-TLVSLLSM--GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDV----E-SPIASCISV-NS-------- 392 (456)
T ss_dssp HH-HHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCC----C-CSSEEEEEC-SS--------
T ss_pred CH-HHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCEecCC----C-CeEEEEEec-cc--------
Confidence 22 222 22333332 345778889999999999999998886 7766654 2 677776632 10
Q ss_pred CCCCCCCCChHHHHHHHhhhcCc---Eec------cCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC
Q 038499 433 KTETDKPLHGPFVATLLNDLFGI---QAR------GGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP 503 (609)
Q Consensus 433 ~~~~~~~l~~~~v~~~L~~~~GI---~v~------~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~ 503 (609)
...++.+.|.+ .|| .+. +|..|.. ...+++|+|++
T Consensus 393 --------~~~~l~~~L~~-~gi~~~rv~~~~g~f~G~~~~~---------------------------~~~~~vr~s~~ 436 (456)
T 2z67_A 393 --------DPVEIAAKLYN-LRVTGPRGIKKTDHFGNCYLGT---------------------------YTHDYIVMNAA 436 (456)
T ss_dssp --------CHHHHHHHHHH-TTEESCEEECTTCHHHHTCSSC---------------------------CSCCEEEEECC
T ss_pred --------HHHHHHHHHHH-cCCCcceEEeecCccccccccc---------------------------cCcchhhhhhh
Confidence 14578888865 465 232 1333331 01379999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q 038499 504 YYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 504 ~~~t~eeid~ll~al~~v 521 (609)
+++|++|+++++++|+++
T Consensus 437 ~~~t~eeid~~l~~L~~~ 454 (456)
T 2z67_A 437 IGVRTEDIVNSVSKLEKI 454 (456)
T ss_dssp TTCCHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHHHH
Confidence 999999999999999864
|
| >3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=274.75 Aligned_cols=405 Identities=10% Similarity=0.079 Sum_probs=261.8
Q ss_pred CCCCcchHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHH-HHHHHhhcCCccCCCCCCchhhHHHHHH
Q 038499 44 VPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIE-NYIINNVLPFYGNTHTCDSYVGQHTTNM 122 (609)
Q Consensus 44 ~~r~~~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~-~ai~~~~~~~~~n~~~~~~~~~~~~~~~ 122 (609)
.|....+.++.++.+++.+.-.......| -|+.+-.++..++.+. +.+...+ |.....+..+...+++
T Consensus 46 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~~~~~~~l~~~~-----n~~~~~~~~~p~~~~l 114 (475)
T 3k40_A 46 APEKPEKWQDVMQDIERVIMPGVTHWHSP------KFHAYFPTANSYPAIVADMLSGAI-----ACIGFTWIASPACTEL 114 (475)
T ss_dssp CCSSCCCHHHHHHHHHHHTGGGCCCTTCT------TBCCSSCCCCCHHHHHHHHHHHHH-----CCCSSSCCCCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhccCCCCCCc------CceeeCCCCCcHHHHHHHHHHHHh-----CccccCccCCcHHHHH
Confidence 34445557888888888763211111111 2777766666555443 4443333 2222224456678899
Q ss_pred HHHHHHHHHHHhCCCCC--------CcEEEeCChHHHHHHHHHHHhcccchhhHHHH---H-HhhhcCCCceEEEECCCC
Q 038499 123 VHEASNYIKKCLGGGQE--------DAMIFCGSGTTAAIKRLQEVMGIAVPSILREK---L-IKCLRDEERWVVFVGPHE 190 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~--------~~vift~sGttaal~~l~~~l~~~~~~~~~~~---~-~~~l~~gd~~~Vlv~~~~ 190 (609)
.+++.+++++++|.+.+ ...+||++||.+++..+..+.....+. .+.. + ...+.++ .+|+++..+
T Consensus 115 E~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~-~~~~~~~~~~~~~~~~--~~vi~s~~~ 191 (475)
T 3k40_A 115 EVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKE-VKELHPEWDEHTILGK--LVGYCSDQA 191 (475)
T ss_dssp HHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHH-HHHHCTTSCHHHHHHH--EEEEEETTS
T ss_pred HHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHH-hhccCcccccccccCC--eEEEECCCc
Confidence 99999999999999753 157888778887666655443211000 0000 0 0001122 379999999
Q ss_pred ccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC-CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEe
Q 038499 191 HHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK-RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (609)
Q Consensus 191 h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~-~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD 269 (609)
|+++..+++..|++++.|++++++ +|+++|+++|++..... .|+++++++++|+||.+.|+++|+++|++||+++|+|
T Consensus 192 H~s~~~~~~~~g~~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~la~~~~~~lhvD 270 (475)
T 3k40_A 192 HSSVERAGLLGGVKLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGPVGNKHNLWIHVD 270 (475)
T ss_dssp CHHHHHHHHHHTCEEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEE
T ss_pred hHHHHHHHHHcCCceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHHHHHHhCCeEEEe
Confidence 999999999999999999999889 99999999998532211 3678999999999999999999999999999999999
Q ss_pred ccccCCcccc-cCCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCC-C--CCCccCCCceEeeccccccccc
Q 038499 270 FAASGPYVEI-DVRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGS-F--PPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 270 ~A~~~~~~~i-d~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~-~--~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+|++++.... ..... ....+|++++++|||+++|.|+|++++++... +.. + .+.+..... . . .
T Consensus 271 ~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~-l~~~~~~~~~yl~~~~--------~-~-~ 339 (475)
T 3k40_A 271 AAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSW-VVNAFNVDPLYLKHDM--------Q-G-S 339 (475)
T ss_dssp CTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGG-C----------------------------
T ss_pred HHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHH-HHHHhcCCccccCCCc--------C-C-C
Confidence 9988754321 11111 11246999999999999999999999987642 111 1 111111000 0 0 0
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCC
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSST 423 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~ 423 (609)
.++......+.+.+.-...+.+++... ...|++.+.++..++++++.+.|+++|+++++.+ +..++++|.+.+ .
T Consensus 340 ~~~~~~~~~~~sr~~~~l~l~~al~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~---~~~~iv~f~~~~-~ 413 (475)
T 3k40_A 340 APDYRHWQIPLGRRFRALKLWFVLRLY--GVENLQAHIRRHCNFAKQFGDLCVADSRFELAAE---INMGLVCFRLKG-S 413 (475)
T ss_dssp ---------CCCGGGTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSC---CBTTEEEEEESS-C
T ss_pred CCCcccccccCCCcccHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC---CceEEEEEEeCC-c
Confidence 000001122233332122223444443 4557889999999999999999999999999876 467899998865 2
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP 503 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~ 503 (609)
. .....+.+.|++. |+.... |. .+. ...++|+++.
T Consensus 414 ~---------------~~~~~l~~~L~~~-g~~~~~------~~--~~~---------------------g~~~lR~~~~ 448 (475)
T 3k40_A 414 N---------------ERNEALLKRINGR-GHIHLV------PA--KIK---------------------DVYFLRMAIC 448 (475)
T ss_dssp H---------------HHHHHHHHHHHHH-TSCBCE------EE--EET---------------------TEEEEEEECC
T ss_pred h---------------HHHHHHHHHHHhC-CcEEEE------ee--EEC---------------------CEEEEEEEeC
Confidence 1 1356788888775 543321 10 000 1378999975
Q ss_pred -CCCCHHHHHHHHHHHHHHHHhc
Q 038499 504 -YYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 504 -~~~t~eeid~ll~al~~v~~~~ 525 (609)
+.+|++||++++++|++++++.
T Consensus 449 ~~~tt~~di~~~~~~i~~~~~~~ 471 (475)
T 3k40_A 449 SRFTQSEDMEYSWKEVSAAADEM 471 (475)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHH
Confidence 6679999999999999988653
|
| >2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-29 Score=267.73 Aligned_cols=320 Identities=14% Similarity=0.123 Sum_probs=226.8
Q ss_pred HHHHHHHHHHHHHHhCCC----CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEEC-CCCccch
Q 038499 120 TNMVHEASNYIKKCLGGG----QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVG-PHEHHSN 194 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~----~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~ 194 (609)
.....++++.++++++.. ++ +|++| +|+++++..++..+... +++|| .|++. +..|+..
T Consensus 37 ~~~~~~~~~~l~~~~~~~~~~~~~-~v~~~-~g~t~al~~~~~~~~~~------------~~~gd--~vlv~~~~~~~~~ 100 (385)
T 2bkw_A 37 VSIFQRVLKNTRAVFKSAAASKSQ-PFVLA-GSGTLGWDIFASNFILS------------KAPNK--NVLVVSTGTFSDR 100 (385)
T ss_dssp HHHHHHHHHHHHHHTTCCGGGTCE-EEEEE-SCTTHHHHHHHHHHSCT------------TCSCC--EEEEECSSHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCc-eEEEc-CchHHHHHHHHHHHhcc------------CCCCC--eEEEEcCCcchHH
Confidence 445677888899988864 34 89998 66666888887766210 16788 45554 3333333
Q ss_pred -HHHHHHcCceEEEEec-CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHh--CCeEEEec
Q 038499 195 -LLSWRQSLAEVVEIGL-DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDF 270 (609)
Q Consensus 195 -~~~~~~~G~~vv~v~~-~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~vivD~ 270 (609)
...++..|++++.++. +.++.+|+++|++++++ .+++++++++++||||.+.|+++|.++|++| |+++|+|+
T Consensus 101 ~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~~~li~D~ 176 (385)
T 2bkw_A 101 FADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ----NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFFVVDA 176 (385)
T ss_dssp HHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH----SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEEEEEC
T ss_pred HHHHHHHcCCceEEEecCCCCCCCCHHHHHHHHhc----CCCCEEEEEccCCCcCeEcCHHHHHHHHHhhCCCCEEEEEC
Confidence 3556778999999999 77888999999999984 3789999999999999999999999999999 99999999
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccC-CCC------CCccCCCceEeeccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLG-SFP------PSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~-~~~------p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+++.+..++++... ++|++++|+||+++||.|+|+++++++. ++ .+. +...++....+ ..
T Consensus 177 a~~~~~~~~~~~~~---~~d~~~~s~~K~~~~~~G~G~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~--------~~ 243 (385)
T 2bkw_A 177 VCSIGCEEFEFDEW---GVDFALTASQKAIGAPAGLSISLCSSRF--MDYALNDSKNGHVHGYFSSLRRW--------TP 243 (385)
T ss_dssp TTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSCEEEEEECHHH--HHHHTCHHHHCCCSCSTTCHHHH--------HH
T ss_pred ccccCCcccccccc---CceEEEecCccccccCCcceEEEEcHHH--HHHHHhhccCCCCCceeecHHHH--------hh
Confidence 99988777766554 6899999999999888889999999887 33 321 22122111000 00
Q ss_pred cccccc--ccccCCChhHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh-CCCCceEEeCCCCC--CCcceEE
Q 038499 344 YLEDIE--ERESGGTPQVIQMIR--AALAFWVKEYIGHEVIKKQEETYIERALERL-LPNQNIKILGNTST--KRQAILS 416 (609)
Q Consensus 344 ~~~~~~--~r~~~gtp~i~~~~~--aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L-~~~p~i~v~~~~~~--~r~~~~~ 416 (609)
...... .....++++..+... +++.+. +..+.+.+.++.+++++++.+.| +++ +++++.+... ....+++
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-g~~~~~~~~~~~~~~~~~~ 320 (385)
T 2bkw_A 244 IMENYEAGKGAYFATPPVQLINSLDVALKEI--LEEGLHKRWDLHREMSDWFKDSLVNGL-QLTSVSRYPSNMSAHGLTA 320 (385)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTTT-CCEESSCSSSTTBCSSCEE
T ss_pred HHHhhhccCCCCCCCCCHHHHHHHHHHHHHH--HHccHHHHHHHHHHHHHHHHHHHHHhc-CceecccCcccccCCceEE
Confidence 000000 011235666665543 334433 34478888899999999999999 988 8888754211 1345555
Q ss_pred EEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 417 FNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
+.+ + ...++.+.|.+ .||.+++|..|.. .++
T Consensus 321 ~~~-~-------------------~~~~~~~~l~~-~gi~v~~g~~~~~----------------------------~~~ 351 (385)
T 2bkw_A 321 VYV-A-------------------DPPDVIAFLKS-HGVVIAGGIHKDI----------------------------GPK 351 (385)
T ss_dssp EEC-S-------------------CHHHHHHHHHH-TTEECBCCCCTTT----------------------------GGG
T ss_pred Eec-C-------------------CHHHHHHHHHH-CCeEEeCCCCccc----------------------------CCC
Confidence 544 3 15678888865 6999998765320 147
Q ss_pred EEEEe-cC---CCCCHHHHHHHHHHHHHHHHh
Q 038499 497 WTRIS-FP---YYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 497 ~iRls-~~---~~~t~eeid~ll~al~~v~~~ 524 (609)
++||+ ++ +.+|++|+++++++|+++++.
T Consensus 352 ~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~~ 383 (385)
T 2bkw_A 352 YIRIGHMGVTACNKNLPYMKNCFDLIKLALQR 383 (385)
T ss_dssp EEEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEEEEccccccccCCHHHHHHHHHHHHHHHHh
Confidence 99999 66 357999999999999987643
|
| >3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-28 Score=269.66 Aligned_cols=427 Identities=13% Similarity=0.124 Sum_probs=266.7
Q ss_pred CCCCCcchHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHH-HHHHHHhhcCCccCCCCCCchhhHHHHH
Q 038499 43 SVPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYI-ENYIINNVLPFYGNTHTCDSYVGQHTTN 121 (609)
Q Consensus 43 ~~~r~~~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v-~~ai~~~~~~~~~n~~~~~~~~~~~~~~ 121 (609)
+.|....+.++.++.+++.+.. + +.. .. .-|+.+-.++..+..+ .+.+...+. .....+..+...+.
T Consensus 68 ~~p~~~~~~~~~~~~~~~~~~~-~--~~~--~~--p~f~~~~~~~~~~~~~~~e~l~~~~~-----~~~~~~~~~p~~~~ 135 (511)
T 3vp6_A 68 ELSDHPESLEQILVDCRDTLKY-G--VRT--GH--PRFFNQLSTGLDIIGLAGEWLTSTAN-----TNMFTYEIAPVFVL 135 (511)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHT-S--CCT--TS--TTEESSSSCCCCHHHHHHHHHHHHHC-----CCSSCTTTCHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhhc-c--CCC--CC--CCceEeecCCCcHHHHHHHHHHHHhc-----cCCCCcccCchHHH
Confidence 3344444577888888765532 2 111 21 2288887777666554 355554443 22222445667788
Q ss_pred HHHHHHHHHHHHhCCCCC-CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 122 MVHEASNYIKKCLGGGQE-DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~-~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
+.+++++++++++|.+.+ +.++||++||.+++..+..+.....+...++ ++...++.+|+++...|+++...++.
T Consensus 136 le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~----G~~~~~~~~v~~s~~~H~s~~~~~~~ 211 (511)
T 3vp6_A 136 MEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTK----GMAAVPKLVLFTSEQSHYSIKKAGAA 211 (511)
T ss_dssp HHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHH----CGGGSCCEEEEEETTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhc----CcccCCCeEEEECCCchHHHHHHHHH
Confidence 999999999999999842 3789996666665544433322100000000 11111334899999999999999999
Q ss_pred cCc---eEEEEecCCCCCCCHHHHHHHHhhhccC-CCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 201 SLA---EVVEIGLDDDGLLDIEALRSKLELYKDA-KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 201 ~G~---~vv~v~~~~~g~ld~e~L~~al~~~~~~-~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.|+ +++.|+.+.++.+|+++|+++|++.... .+|+++++++++|+||.+.|+++|+++|++||+++|+|+|++++.
T Consensus 212 ~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhvD~a~~~~~ 291 (511)
T 3vp6_A 212 LGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHVDAAWGGGL 291 (511)
T ss_dssp TTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEEEETTGGGG
T ss_pred cCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEEEccchhhH
Confidence 988 9999999989999999999999853211 128899999999999999999999999999999999999998876
Q ss_pred ccccCCCC---CCCCccEEEEcCCCCCCCCCCcEEEEEechh-hc-cCCCCCCccCCCceEeeccccccccccccccccc
Q 038499 277 VEIDVRSG---QTDGYDAIFLSTHKFLGGPGSPGILLMTKAL-YQ-LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEER 351 (609)
Q Consensus 277 ~~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~-~~-l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r 351 (609)
...+-... ...++|++++++|||+++|.++|++++++.. .. .....+.+.......+ ...++.....
T Consensus 292 ~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~--------~~~~~~~~~~ 363 (511)
T 3vp6_A 292 LMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHY--------DVSYDTGDKA 363 (511)
T ss_dssp GGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSS--------CGGGCCGGGS
T ss_pred hhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCccccc--------ccccCccCCC
Confidence 53221000 1135799999999999999999999998753 11 1111122111100000 0000000111
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCC
Q 038499 352 ESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGEN 431 (609)
Q Consensus 352 ~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~ 431 (609)
...+.+.-...+.+++... ...|++.+.++..++++++.+.|+++|+++++.+. .+..++++|...+ ...+....+
T Consensus 364 ~~~~r~~~al~~~~al~~~--g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~-~p~~~~v~f~~~p-~~~~~~~~~ 439 (511)
T 3vp6_A 364 IQCGRHVDIFKFWLMWKAK--GTVGFENQINKCLELAEYLYAKIKNREEFEMVFNG-EPEHTNVCFWYIP-QSLRGVPDS 439 (511)
T ss_dssp SCSSCCCCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSS-CCSSSCEEEEECC-GGGSSCCCC
T ss_pred CCCCCchHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecC-CCCeEEEEEEEeC-ccccccccc
Confidence 2222222112223344433 44578889999999999999999999999998731 2467889998766 220000000
Q ss_pred CCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHH
Q 038499 432 TKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEE 510 (609)
Q Consensus 432 ~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~ee 510 (609)
.....+.......+.+.|.++ |+.+... .+... +.+++|+++ ++.++.+|
T Consensus 440 ~~~~~~l~~~~~~l~~~L~~~-G~~~~~~----~~~~~------------------------~~~~lRi~~~~~~~t~~d 490 (511)
T 3vp6_A 440 PQRREKLHKVAPKIKALMMES-GTTMVGY----QPQGD------------------------KANFFRMVISNPAATQSD 490 (511)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TSCEEEE----EEETT------------------------EEEEEEECCCCTTCCHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhc-CCEEEEE----EEeCC------------------------ceEEEEEEecCCCCCHHH
Confidence 000000000123577778765 7644321 01000 136899999 89999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 038499 511 FEFTLEALEFIAIYGQ 526 (609)
Q Consensus 511 id~ll~al~~v~~~~~ 526 (609)
|++++++|+++.+..+
T Consensus 491 i~~ll~~i~~~~~~~~ 506 (511)
T 3vp6_A 491 IDFLIEEIERLGQDLH 506 (511)
T ss_dssp HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhh
Confidence 9999999999987654
|
| >1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=5.7e-30 Score=268.89 Aligned_cols=344 Identities=14% Similarity=0.121 Sum_probs=246.2
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchh---hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChH-HHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYV---GQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGT-TAAIK 154 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~---~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGt-taal~ 154 (609)
+|+++.+..+.|+.|.+++.+.+... .|++...+.. +....+.++++++++++++|++..++|+++ +|+ ++++.
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~-~g~gt~al~ 81 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLNF-NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFL-QGGASLQFT 81 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSSS-TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEE-SSHHHHHHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhhh-ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEE-CCcchHHHH
Confidence 67788777889999999999888654 5665432222 455677899999999999999733489998 666 88888
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCc-eEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHH-HHhhhccC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEER-WVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRS-KLELYKDA 231 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~-~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~-al~~~~~~ 231 (609)
.++..+. .+|++ .+|+++.++|++.. .++..| +++.+++++ ++.+|+++|++ +++
T Consensus 82 ~~~~~l~---------------~~~~~g~~vi~~~~~~~~~~-~~~~~g-~~~~v~~~~~~~~~d~~~l~~~~i~----- 139 (360)
T 1w23_A 82 MLPMNLL---------------TKGTIGNYVLTGSWSEKALK-EAKLLG-ETHIAASTKANSYQSIPDFSEFQLN----- 139 (360)
T ss_dssp HHHHHHC---------------CTTCEEEEEECSHHHHHHHH-HHHTTS-EEEEEEECGGGTSCSCCCGGGCCCC-----
T ss_pred HHHHHhc---------------CCCCcccEEEecchhHHHHH-HHHHhC-CeEEeecccccCcCCccchHhhccC-----
Confidence 8877663 33322 26788888887633 356679 999999876 67789999988 776
Q ss_pred CCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEE
Q 038499 232 KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLM 311 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~ 311 (609)
++|+++++++++||||.+.| +|. ++||+++|+|++++.+..++++.. .|++++|+||++| |.|+|++++
T Consensus 140 ~~~k~v~~~~~~nptG~~~~--~i~---~~~~~~li~D~a~~~~~~~~~~~~-----~di~~~s~sK~~~-~~G~G~~~~ 208 (360)
T 1w23_A 140 ENDAYLHITSNNTIYGTQYQ--NFP---EINHAPLIADMSSDILSRPLKVNQ-----FGMIYAGAQKNLG-PSGVTVVIV 208 (360)
T ss_dssp TTEEEEEEESEETTTTEECS--SCC---CCCSSCEEEECTTTTTSSCCCGGG-----CSEEEEETTTTTS-CTTCEEEEE
T ss_pred CCCCEEEEeCCCCCcceecc--ccc---ccCCceEEEechhhcCCCCcCccc-----CCEEEEEcccccC-CCCcEEEEE
Confidence 68999999999999999987 333 389999999999998887766543 3899999999997 767999999
Q ss_pred echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhc-CHHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYI-GHEVIKKQEETYI 388 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~-g~~~i~~~~~~l~ 388 (609)
++++ ++.+.+.. ++.. .+ ... ...+...+++++.+.. .+++.+. +.. +.+.+.++.++++
T Consensus 209 ~~~~--~~~~~~~~-~~~~-~~---------~~~--~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~~~~~ 271 (360)
T 1w23_A 209 KKDL--LNTKVEQV-PTML-QY---------ATH--IKSDSLYNTPPTFSIYMLRNVLDWI--KDLGGAEAIAKQNEEKA 271 (360)
T ss_dssp EHHH--HCSCCTTC-CGGG-CH---------HHH--HHTTTCSSCCCHHHHHHHHHHHHHH--HHTTHHHHHHHHHHHHH
T ss_pred cHHH--HhhcccCC-cchh-hh---------hhh--hhccCCCCCCCHHHHHHHHHHHHHH--HHhcCHHHHHHHHHHHH
Confidence 9988 45554432 1110 00 000 0123445677766543 3344432 333 5788899999999
Q ss_pred HHHHHHhCCCCce-EEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh
Q 038499 389 ERALERLLPNQNI-KILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 389 ~~~~~~L~~~p~i-~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
+++.+.|++++++ .++.+. ..+.+ ++++.+.. . .+...+.+.|.+ .||.+++|..
T Consensus 272 ~~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~----------------~~~~~~~~~l~~-~gi~~~~~~~---- 328 (360)
T 1w23_A 272 KIIYDTIDESNGFYVGHAEK-GSRSLMNVTFNLRN-E----------------ELNQQFLAKAKE-QGFVGLNGHR---- 328 (360)
T ss_dssp HHHHHHHHTTTTSSEESSCG-GGBCSSEEEEECSS-H----------------HHHHHHHHHHHH-TTEESCBCCT----
T ss_pred HHHHHHHHHccCcccccCCc-hhccCcEEEEEcCC-C----------------ccHHHHHHHHHH-CCeeeecCCC----
Confidence 9999999988765 544211 12345 55555432 1 134567777754 6999876532
Q ss_pred hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 467 ~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++|||++.+++++|+++++++|++++++
T Consensus 329 ---------------------------~~~~iRis~~~~~~~~~i~~~~~~l~~~~~~ 359 (360)
T 1w23_A 329 ---------------------------SVGGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp ---------------------------TTCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------------CCCeEEEEecCCCCHHHHHHHHHHHHHHHhh
Confidence 1378999999999999999999999998764
|
| >4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=268.07 Aligned_cols=408 Identities=10% Similarity=0.034 Sum_probs=263.9
Q ss_pred CCCCcchHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHH-HHHHHHHhhcCCccCCCCCCchhhHHHHHH
Q 038499 44 VPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRY-IENYIINNVLPFYGNTHTCDSYVGQHTTNM 122 (609)
Q Consensus 44 ~~r~~~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~-v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~ 122 (609)
.|....+.++.++.+++.+.-.......| -|+.+-.++..++. +.+.+...+. .|.. .+..+...+++
T Consensus 51 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~~~~~~~~~~~~n---~~~~--~~~~~p~~~~l 119 (481)
T 4e1o_A 51 APEDPDSWDSIFGDIERIIMPGVVHWQSP------HMHAYYPALTSWPSLLGDMLADAIN---CLGF--TWASSPACTEL 119 (481)
T ss_dssp CCSSCCCHHHHHHHHHHHTGGGCCCTTST------TBCSSSCCCCCHHHHHHHHHHHHHC---CCCS--STTTCHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCCCCC------CeeEeCCCCCCHHHHHHHHHHHHhC---cccC--CcCCCcHHHHH
Confidence 34444557888888888753111111111 26777655555444 4444444442 1222 24456678899
Q ss_pred HHHHHHHHHHHhCCCCC---------CcEEEeCChHHHHHHHHHHHhcccchhhHHHH--H-HhhhcCCCceEEEECCCC
Q 038499 123 VHEASNYIKKCLGGGQE---------DAMIFCGSGTTAAIKRLQEVMGIAVPSILREK--L-IKCLRDEERWVVFVGPHE 190 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~---------~~vift~sGttaal~~l~~~l~~~~~~~~~~~--~-~~~l~~gd~~~Vlv~~~~ 190 (609)
..++.+++++++|.+.. ...+||++||.+++..++.+.....+...... + ...+.+++ +|+++..+
T Consensus 120 E~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~--~v~~s~~~ 197 (481)
T 4e1o_A 120 EMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARL--VAYASDQA 197 (481)
T ss_dssp HHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTE--EEEEETTS
T ss_pred HHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCe--EEEEcCcc
Confidence 99999999999998753 15688877788766666544321100000000 0 00112444 89999999
Q ss_pred ccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC-CCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEe
Q 038499 191 HHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA-KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (609)
Q Consensus 191 h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~-~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD 269 (609)
|+++...++..|++++.|+.++++.+|+++|+++|++.... ..|+++++++++|+||.+.|+++|+++|++||+++|+|
T Consensus 198 H~s~~~~~~~~g~~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~~la~~~~~~lhvD 277 (481)
T 4e1o_A 198 HSSVEKAGLISLVKMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELGPICAREGLWLHID 277 (481)
T ss_dssp CHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEE
T ss_pred hHHHHHHHHhCCCceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHHHHHHHcCCeEEee
Confidence 99999999889999999999889999999999999853221 12778999999999999999999999999999999999
Q ss_pred ccccCCccccc-CCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC--CCCccCCCceEeecccccccccc
Q 038499 270 FAASGPYVEID-VRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF--PPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 270 ~A~~~~~~~id-~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~--~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
+|++++....+ .... ....+|++++++|||+++|.|+|++++++.......+ .+.+..... ......+
T Consensus 278 aA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~-------~~~~~~~ 350 (481)
T 4e1o_A 278 AAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHAN-------SGVATDF 350 (481)
T ss_dssp CTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTT-------TTTSCCG
T ss_pred hhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCcc-------cCCCCCc
Confidence 99887643221 1111 1124599999999999999999999998764211111 111111000 0000001
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCC
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~ 424 (609)
. ......+.+.-...+.+++... ...|++.+.++..++++++.+.|+++|+++++.+ +..++++|.+.+ ..
T Consensus 351 ~---~~~~~~~r~~~~l~~~~al~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~---~~~~~v~f~~~~-~~ 421 (481)
T 4e1o_A 351 M---HWQIPLSRRFRSVKLWFVIRSF--GVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPAK---RHLGLVVFRLKG-PN 421 (481)
T ss_dssp G---GGSSSSCCCCTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCSC---CCSSEEEEEESS-CH
T ss_pred c---cccccCCCCccHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC---CceeEEEEEeCC-ch
Confidence 0 1112223221112223344433 3457888899999999999999999999999865 367888888865 11
Q ss_pred CCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC-
Q 038499 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP- 503 (609)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~- 503 (609)
.....+.+.|++. |+.+.++. .+. ...++|+++.
T Consensus 422 ---------------~~~~~l~~~L~~~-g~~~~~~~--------~~~---------------------g~~~lR~~~~~ 456 (481)
T 4e1o_A 422 ---------------SLTENVLKEIAKA-GRLFLIPA--------TIQ---------------------DKLIIRFTVTS 456 (481)
T ss_dssp ---------------HHHHHHHHHHHHH-CSSBCEEE--------EET---------------------TEEEEEEECCC
T ss_pred ---------------HHHHHHHHHHHhC-CeEEEEee--------EEC---------------------CEEEEEEEeCC
Confidence 1356788888765 64332110 000 1368999975
Q ss_pred CCCCHHHHHHHHHHHHHHHHhc
Q 038499 504 YYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 504 ~~~t~eeid~ll~al~~v~~~~ 525 (609)
+.+|++|+++++++|+++++..
T Consensus 457 ~~tt~~di~~~~~~i~~~~~~l 478 (481)
T 4e1o_A 457 QFTTRDDILRDWNLIRDAATLI 478 (481)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHH
Confidence 5569999999999999988753
|
| >1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-28 Score=266.03 Aligned_cols=399 Identities=13% Similarity=0.083 Sum_probs=258.3
Q ss_pred CCCcchHHHHHHHHHhhc-cCCCccccCCCCCCceEEecCCCCCCChH-HHHHHHHHhhcCCccCCCCCCchhhHHHHHH
Q 038499 45 PKSISSSEKKLTWLQSQI-IGKNAEFDSPFGKRRLTYADHTASGRSLR-YIENYIINNVLPFYGNTHTCDSYVGQHTTNM 122 (609)
Q Consensus 45 ~r~~~~~~~~~~~~r~~~-~g~~~~~~~p~g~~~~vyld~~a~g~~~~-~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~ 122 (609)
|....+.++.++.+++.+ ++.. ... ...|++|..+++.++ .+.+++...+ |+....+..+.....+
T Consensus 47 p~~~~~~~~~~~~~~~~~~~~~~-----~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~-----n~~~~~~~~~~~~~~l 114 (486)
T 1js3_A 47 PQEPDTFEDILQDVEKIIMPGVT-----HWH--SPYFFAYFPTASSYPAMLADMLCGAI-----GCIGFSWAASPACTEL 114 (486)
T ss_dssp CSSCCCHHHHHHHHHHTTGGGCC-----CTT--STTBCSSSCCCCCHHHHHHHHHHHHH-----CCCCSSGGGCHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcCCC-----CCC--CCCceEeCCCCCCHHHHHHHHHHHHh-----CcCccccccChhHHHH
Confidence 334444677888888865 3321 111 122666666666554 4566665554 3333334456667888
Q ss_pred HHHHHHHHHHHhCCCCC--------CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhc--CCC--------ceEE
Q 038499 123 VHEASNYIKKCLGGGQE--------DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLR--DEE--------RWVV 184 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~--------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~--~gd--------~~~V 184 (609)
..++++++++++|.+.+ ..++||++||.+++..+..+.. .....++ .|| +.+|
T Consensus 115 e~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~---------~~~~~~~~~~gd~~~~~~~~~~~v 185 (486)
T 1js3_A 115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAART---------KVVRRLQAASPGLTQGAVLEKLVA 185 (486)
T ss_dssp HHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHH---------HHHHHHHHHSTTCCHHHHHHHEEE
T ss_pred HHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHH---------HHhhhhhccCccchhcccCCCEEE
Confidence 88999999999999742 2588996666654444332221 0000000 132 3368
Q ss_pred EECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC-CceEEEEecccCccccccCHHHHHHHHHHhC
Q 038499 185 FVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK-RPILGSFSACSNVTGIYSDTRSIARLLHQYG 263 (609)
Q Consensus 185 lv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~-~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g 263 (609)
+++..+|+++...++..|++++.|++++++.+|+++|+++|++....+ .+.++++++++|+||.+.|+++|+++|++||
T Consensus 186 ~~s~~~h~s~~~~~~~~G~~v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~la~~~~ 265 (486)
T 1js3_A 186 YASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEED 265 (486)
T ss_dssp EEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTT
T ss_pred EECCCCcHHHHHHHHhCCCceEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHHHHHHcC
Confidence 899999999999999999999999998889999999999998532111 2358999999999999999999999999999
Q ss_pred CeEEEeccccCCcccc-cCCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC---CCCccCCCceEeeccc
Q 038499 264 GFACFDFAASGPYVEI-DVRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF---PPSTCGGGTVNYVNGF 337 (609)
Q Consensus 264 ~~vivD~A~~~~~~~i-d~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~---~p~~~ggg~v~~~~~~ 337 (609)
+++|+|+|++.+.... ++... ...++|++++++|||+++|.++|++++++.....+.+ .+...+++....
T Consensus 266 ~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~~~~yl~~~~~~~~---- 341 (486)
T 1js3_A 266 IWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSG---- 341 (486)
T ss_dssp CEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------CC----
T ss_pred CEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcCCchhhCCCccccc----
Confidence 9999999988765432 22211 1136799999999999999999999998763101122 111111111000
Q ss_pred ccccccccccccccccCCCh-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEE
Q 038499 338 NEKDTLYLEDIEERESGGTP-QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILS 416 (609)
Q Consensus 338 ~~~~~~~~~~~~~r~~~gtp-~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~ 416 (609)
....+.. .....+.+ ..+. +.+++... ...|++.+.++..++++++.+.|+++|+++++.+ +..++++
T Consensus 342 --~~~~~~~---~~~~~~rr~~~~~-~~~al~~~--g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~---~~~~~v~ 410 (486)
T 1js3_A 342 --LITDYRH---WQLPLGRRFRSLK-MWFVFRMY--GVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE---VTLGLVC 410 (486)
T ss_dssp --SCCCGGG---SSSCSCCCCTHHH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSC---CCSSEEE
T ss_pred --CCCCccc---cCCCCCCchhHHH-HHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC---CceeEEE
Confidence 0000000 00111111 1222 23333332 3456788888999999999999999999999875 3578888
Q ss_pred EEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 417 FNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
|.+.+ .. .....+.+.|.+. |+.+.++..+. ..+
T Consensus 411 f~~~~-~~---------------~~~~~l~~~L~~~-g~~~~~~~~~~-----------------------------~~~ 444 (486)
T 1js3_A 411 FRLKG-SD---------------GLNEALLERINSA-RKIHLVPCRLR-----------------------------GQF 444 (486)
T ss_dssp EEESS-CH---------------HHHHHHHHHHHHH-TSCBCEEEEET-----------------------------TEE
T ss_pred EEecC-hH---------------HHHHHHHHHHHhc-CCEEEEEEEEC-----------------------------CEE
Confidence 87764 10 0146788888664 76543221110 147
Q ss_pred EEEEec-CCCCCHHHHHHHHHHHHHHHHhc
Q 038499 497 WTRISF-PYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 497 ~iRls~-~~~~t~eeid~ll~al~~v~~~~ 525 (609)
++|+++ ++++|++|+++++++|+++++..
T Consensus 445 ~lRi~~~~~~~t~~di~~~~~~l~~~~~~~ 474 (486)
T 1js3_A 445 VLRFAICSRKVESGHVRLAWEHIRGLAAEL 474 (486)
T ss_dssp EEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999997 77899999999999999988764
|
| >3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-29 Score=267.73 Aligned_cols=333 Identities=14% Similarity=0.151 Sum_probs=236.5
Q ss_pred CCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCce
Q 038499 103 PFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERW 182 (609)
Q Consensus 103 ~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~ 182 (609)
..++|+.. ++.+....+.++++++.+++++|++ + .++|+++ ++++++.++.. +.+||
T Consensus 19 ~~~~~~~~--~h~~~~~~~~~~~~~~~l~~~~~~~-~-~v~~~~s-gt~a~~~~~~~----------------~~~gd-- 75 (379)
T 3ke3_A 19 VVYTDRAL--NHMSKAFQEVMNDLLSNLKTVYNAE-A-AVIIPGS-GTYGMEAVARQ----------------LTIDE-- 75 (379)
T ss_dssp SSCCTTSC--CTTSHHHHHHHHHHHHHHHHHHTCS-E-EEEEESC-HHHHHHHHHHH----------------HCTTC--
T ss_pred HhccCCCC--CCCCHHHHHHHHHHHHHHHHHhCCC-C-EEEEcCC-hhHHHHHHHHh----------------CCCCC--
Confidence 33566654 3356677899999999999999997 3 7889854 55567776544 35788
Q ss_pred EEEECCCCccchHH--HHHHcC--ceEEEEecCCC---------CCCCHHHHHHHHhhhccCCCceEEEEecccCccccc
Q 038499 183 VVFVGPHEHHSNLL--SWRQSL--AEVVEIGLDDD---------GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY 249 (609)
Q Consensus 183 ~Vlv~~~~h~s~~~--~~~~~G--~~vv~v~~~~~---------g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~ 249 (609)
.|++...+|+++.. ..+..| ++++.++.+.. +.+|+++|++++++ ++++++++++++|+||.+
T Consensus 76 ~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~----~~~~~v~~~~~~~~~G~~ 151 (379)
T 3ke3_A 76 DCLIIRNGWFSYRWTQILEKGKFAKSSTVLTAERTEDTEAPKPFAPVDIETAVAKIKE----DKSAIVYAPHVETSSGII 151 (379)
T ss_dssp EEEEEECSHHHHHHHHHHHHHCCSSEEEEEECEESSCCSSCCCEECCCHHHHHHHHHH----HTCSEEEEESEETTTTEE
T ss_pred eEEEEeCCchhHHHHHHHHHhCCCCceEEEeccccccccccCCCCCCCHHHHHHHHhh----cCCcEEEEEeecCCCcee
Confidence 68888888887542 233445 47888876432 25899999999964 378999999999999999
Q ss_pred cC---HHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCcc
Q 038499 250 SD---TRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTC 326 (609)
Q Consensus 250 ~d---l~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ 326 (609)
.| +++|.++||+||+++|+|++++ +..++++..+ ++|++++|+||+++||.|+|++++++++. +.+.+...
T Consensus 152 ~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~~~~~~~~---~~d~~~~s~~K~l~~~~g~g~~~~~~~~~--~~l~~~~~ 225 (379)
T 3ke3_A 152 LSEEYIKALSEAVHSVGGLLVIDCIAS-GCVWLDMKEL---GIDVLISAPQKGWSSTPCAGLVMLSAAAI--KKVESTES 225 (379)
T ss_dssp CCHHHHHHHHHHHHHTTCEEEEECTTC-TTCCCCHHHH---TCSEEEECTTTTTCSCCCEEEEEECHHHH--HHHHTCCC
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEeccc-CCcccccccc---CCCEEEecchhhcCCCCceEEEEECHHHH--HhhhcCCC
Confidence 99 9999999999999999999998 7777776654 78999999999999999999999999873 33322110
Q ss_pred CCCceEeecccccccccccc---cccc--cccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Q 038499 327 GGGTVNYVNGFNEKDTLYLE---DIEE--RESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ 399 (609)
Q Consensus 327 ggg~v~~~~~~~~~~~~~~~---~~~~--r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p 399 (609)
.+ +..+...|.. ..+. +...+|+++..+. .+++.+. +..|++.+.++.+++++++++.|.++
T Consensus 226 ~~--------~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~aal~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~- 294 (379)
T 3ke3_A 226 NC--------FSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRDAILEA--KEIGFDILRDAQWELGNRVRKVLTDK- 294 (379)
T ss_dssp SC--------STTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred Cc--------eeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHHHHHHH--HHhcHHHHHHHHHHHHHHHHHHHHHc-
Confidence 00 0000000100 0001 1112477766554 3445544 45589999999999999999999887
Q ss_pred ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC--hhhhhhcCCChh
Q 038499 400 NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG--PYGHHLLDLDEA 477 (609)
Q Consensus 400 ~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~--p~~~~ll~i~~~ 477 (609)
+++++.+. ..+.+++.....+ . ....+.+.|.+ .||.+++|..|.. |.
T Consensus 295 g~~~~~~~-~~~~~~i~~~~~~-~-----------------~~~~~~~~L~~-~Gi~v~~g~~~~~~~~~---------- 344 (379)
T 3ke3_A 295 GIESVAAE-GFEAPGVVVSYTE-R-----------------DDMHKGSAFAE-AGLQIAAGVPLKVGEPD---------- 344 (379)
T ss_dssp TCCBSBCT-TCBCSSEEEEECS-C-----------------HHHHSSHHHHH-TTCCCEECCCCSSCCCT----------
T ss_pred CCEecCCc-cccCceEEEEccC-C-----------------cchHHHHHHHH-CCeEEeCCccccccccC----------
Confidence 78877653 3456766554433 1 11122566644 6999998876542 11
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 478 QSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
..+.+|+|++.++|++|+++++++|+++++..
T Consensus 345 ----------------~~~~lRis~~~~~t~~di~~~~~~l~~~l~~~ 376 (379)
T 3ke3_A 345 ----------------NFKTFRLGLFGLDKLTDIDGTVERFEKALDEV 376 (379)
T ss_dssp ----------------TCCEEEEECCSHHHHTCHHHHHHHHHHHHHHH
T ss_pred ----------------cCCEEEEeCCcCCCHHHHHHHHHHHHHHHHHh
Confidence 24799999999999999999999999988654
|
| >3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-28 Score=255.81 Aligned_cols=324 Identities=16% Similarity=0.108 Sum_probs=235.7
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
+++++|+.+... +.++.|.+++.+.+.....++ .....++++.+++++|++++ +|++| +|+++++.
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~-----------~~~~~~lr~~la~~~~~~~~-~v~~~-~g~t~a~~ 98 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVETEIYP-----------DGWASSLRKEVADFYQLEEE-ELIFT-AGVDELIE 98 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSCCCBC---------------CHHHHHHHHHHHTCCGG-GEEEE-SSHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHHhhcCC-----------CcchHHHHHHHHHHhCCChh-hEEEe-CCHHHHHH
Confidence 367888776543 356788888887664332222 12357899999999998876 89998 78888899
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
.++..+ +++|| .|+++.+.|+++...++..|++++.++.++++.+|+++|+++++ +++
T Consensus 99 ~~~~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~-----~~~ 156 (363)
T 3ffh_A 99 LLTRVL---------------LDTTT--NTVMATPTFVQYRQNALIEGAEVREIPLLQDGEHDLEGMLNAID-----EKT 156 (363)
T ss_dssp HHHHHH---------------CSTTC--EEEEEESSCHHHHHHHHHHTCEEEEEECCTTSCCCHHHHHHHCC-----TTE
T ss_pred HHHHHH---------------ccCCC--EEEEcCCChHHHHHHHHHcCCEEEEecCCCCCCcCHHHHHHhcc-----cCC
Confidence 888876 37888 68999999999988899999999999998888999999999998 689
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHh--CCeEEEeccccCCcc---cccCCCCCCCCccEEEEcCCCCCCCC-CCcEE
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYV---EIDVRSGQTDGYDAIFLSTHKFLGGP-GSPGI 308 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~vivD~A~~~~~~---~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~ 308 (609)
+++++++++||||.+.|.++|.++++.+ |+++|+|++++.... ...+......+.++++.|++|++|.+ .++|+
T Consensus 157 ~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~ 236 (363)
T 3ffh_A 157 TIVWICNPNNPTGNYIELADIQAFLDRVPSDVLVVLDEAYIEYVTPQPEKHEKLVRTYKNLIITRTFSKIYGLASARVGY 236 (363)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHTTSCTTSEEEEECTTGGGCSSCCCCCGGGGGTCTTEEEEEESSSTTCCSSCCCEE
T ss_pred CEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCcEEEEeCchHhhcCccccCHHHHhhcCCCEEEEeechhhhcCchhceee
Confidence 9999999999999999999999999888 999999999873211 11111111124467888999999733 24699
Q ss_pred EEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 038499 309 LLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYI 388 (609)
Q Consensus 309 L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (609)
+++++++. +.+.+. ....+++......+... +.+..+.+.+.++.++++
T Consensus 237 ~~~~~~~~--~~l~~~---------------------------~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~~ 285 (363)
T 3ffh_A 237 GIADKEII--RQLNIV---------------------------RPPFNTTSIGQKLAIEA--IKDQAFIGECRTSNANGI 285 (363)
T ss_dssp EEECHHHH--HHHHHT---------------------------CCSCCCBHHHHHHHHHH--HHCHHHHHHHHHHHHHHH
T ss_pred eecCHHHH--HHHHHh---------------------------CCCCCCCHHHHHHHHHH--hcCHHHHHHHHHHHHHHH
Confidence 99988872 222111 00122333332222211 122334677888888999
Q ss_pred HHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh
Q 038499 389 ERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG 468 (609)
Q Consensus 389 ~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~ 468 (609)
+++.+.|+++++++++.+ ...++++.+.. +...+.+.|.+ .||.+++|..|.
T Consensus 286 ~~l~~~l~~~~g~~~~~~----~~~~~~~~~~~-------------------~~~~~~~~l~~-~gi~v~~g~~~~---- 337 (363)
T 3ffh_A 286 KQYEAFAKRFEKVKLYPA----NGNFVLIDLGI-------------------EAGTIFSYLEK-NGYITRSGAALG---- 337 (363)
T ss_dssp HHHHHHHHHCTTCEECCC----CSSEEEEECSS-------------------CHHHHHHHHHH-TTEECEETTTTT----
T ss_pred HHHHHHHhhCCCceECCC----CCeEEEEECCC-------------------CHHHHHHHHHH-CCeEEEeCccCC----
Confidence 999999988778988754 23444443321 46788888876 599999876553
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.++++||+++ +++|+++++++|+++
T Consensus 338 -------------------------~~~~iRis~~---~~~~i~~~~~~l~~~ 362 (363)
T 3ffh_A 338 -------------------------FPTAVRITIG---KEEDNSAVIALLEKL 362 (363)
T ss_dssp -------------------------CTTEEEEECC---CHHHHHHHHHHHHHH
T ss_pred -------------------------CCCeEEEECC---CHHHHHHHHHHHHHh
Confidence 1489999997 999999999999875
|
| >1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=275.46 Aligned_cols=361 Identities=14% Similarity=0.104 Sum_probs=246.1
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCc--cCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC---cEEEeCChHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFY--GNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQED---AMIFCGSGTTAA 152 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~--~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~---~vift~sGttaa 152 (609)
.+.|.. +..+.++.|.+++.+.+...| ++|+...+..+....++.+.+++++++++|+++++ +|+++ +|+ ++
T Consensus 46 ~i~L~a-~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~~g~~~~~~~~~V~~~-sGs-~a 122 (483)
T 1rv3_A 46 GLELIA-SENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPY-SGS-PA 122 (483)
T ss_dssp SEECCT-TCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCS-SHH-HH
T ss_pred CeEEEc-CCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHHhCCCcccCceEEEEC-CcH-HH
Confidence 344432 335678899999988887666 56654333333445677888999999999998642 37776 888 55
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH--------HHcC--ceEEEEecC-CCCCCCHHHH
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW--------RQSL--AEVVEIGLD-DDGLLDIEAL 221 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--------~~~G--~~vv~v~~~-~~g~ld~e~L 221 (609)
+..++.++ ++||| .|++++.+|+++...+ +..| .+++.++++ +++.+|+++|
T Consensus 123 n~~~~~al---------------l~pGD--~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~d~l 185 (483)
T 1rv3_A 123 NFAVYTAL---------------VEPHG--RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRL 185 (483)
T ss_dssp HHHHHHHH---------------TCTTC--EEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHH
T ss_pred HHHHHHHh---------------cCCCC--EEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCHHHH
Confidence 55545544 47999 6999999999887544 2334 345555556 4788999999
Q ss_pred HHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCC
Q 038499 222 RSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLG 301 (609)
Q Consensus 222 ~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lg 301 (609)
++++++ ++|++|++ +++|++ .+.|+++|.++|++||+++++|+||+.+....++......++|++++|+||+|+
T Consensus 186 e~~i~~----~~tklIi~-~~sn~~-~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~ 259 (483)
T 1rv3_A 186 EENARL----FHPKLIIA-GTSCYS-RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLR 259 (483)
T ss_dssp HHHHHH----HCCSEEEE-CCSSCC-SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGC
T ss_pred HHHHhh----cCCcEEEE-eCCcCC-CcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCC
Confidence 999985 47899988 889998 899999999999999999999999987666555443222367999999999999
Q ss_pred CCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHH
Q 038499 302 GPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIK 381 (609)
Q Consensus 302 gp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~ 381 (609)
||.| |++++++++ .. +. ..+|....| +....+.........|+|+...+...+.++......+.+.+.
T Consensus 260 Gprg-G~i~~~~~~--~~-~~--~~~g~~~~y------~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~ 327 (483)
T 1rv3_A 260 GCRA-GMIFYRRGV--RS-VD--PKTGKEILY------NLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQ 327 (483)
T ss_dssp CCSC-EEEEEECSB--CC----------CCBC------CHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHH
T ss_pred CCCc-eEEEEcchh--hh-hc--cccCcchhh------HHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHH
Confidence 9998 999999886 22 22 122211110 000000000011125777766544333333222233578888
Q ss_pred HHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEec---
Q 038499 382 KQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQAR--- 458 (609)
Q Consensus 382 ~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~--- 458 (609)
++..++++++.+.|.++ |++++.+..... .+.+.+.. . .++..++.+.|. +.||.++
T Consensus 328 ~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~--~~~v~~~~-~---------------g~~~~~~~~~L~-~~gI~v~~~~ 387 (483)
T 1rv3_A 328 RQVVANCRALSAALVEL-GYKIVTGGSDNH--LILVDLRS-K---------------GTDGGRAEKVLE-ACSIACNKNT 387 (483)
T ss_dssp HHHHHHHHHHHHHHHHT-TCEEGGGSCSSS--EEEEEGGG-G---------------TCCHHHHHHHHH-HTTEECEEEC
T ss_pred HHHHHHHHHHHHHHHhc-CCEeccCCCCCc--eEEEeccC-C---------------CCCHHHHHHHHH-hCCcEEecCC
Confidence 99999999999999887 899886521112 22222222 1 146778888885 5799999
Q ss_pred -cCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC----HHHHHHHHHHHHHHHHh
Q 038499 459 -GGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS----NEEFEFTLEALEFIAIY 524 (609)
Q Consensus 459 -~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t----~eeid~ll~al~~v~~~ 524 (609)
+|..|. + .++++||+++.++| ++|+++++++|++++..
T Consensus 388 ~pg~~~~--~--------------------------~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~~ 430 (483)
T 1rv3_A 388 CPGDKSA--L--------------------------RPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIEL 430 (483)
T ss_dssp CSSCSCT--T--------------------------SCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcC--C--------------------------CCceEEeecCCcccCCCCHHHHHHHHHHHHHHHHh
Confidence 765433 1 25899999987777 99999999999998765
|
| >3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-28 Score=267.49 Aligned_cols=336 Identities=15% Similarity=0.082 Sum_probs=244.5
Q ss_pred HHHHHHHHHhhcCCc-cCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 91 RYIENYIINNVLPFY-GNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG-QEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 91 ~~v~~ai~~~~~~~~-~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~-~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
+.+.+++.+.+..+. .|+.. +.......++..++++++++++|++ ..++++++ +|+++++..++.++.-
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~-~ggt~a~~~a~~a~~~------ 148 (497)
T 3mc6_A 78 DDLIHLQTIAYEKYCVANQLH--PDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTT-SGGTESLLLACLSAKM------ 148 (497)
T ss_dssp HHHHHHHHHHHHHTSSCBTTC--TTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEE-SSHHHHHHHHHHHHHH------
T ss_pred hHHHHHHHHHHHHHhhcCCCC--cccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEc-CcHHHHHHHHHHHHHH------
Confidence 556666666554331 23322 2233456788899999999999998 33389998 5666677777665410
Q ss_pred HHHHHhhhcCC---CceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 169 REKLIKCLRDE---ERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 169 ~~~~~~~l~~g---d~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
... -++| + +|+++...|+++...++..|++++.|++++ ++.+|+++|+++|+ ++++++++++++|
T Consensus 149 --~~~--~~~g~~~~--~Vi~~~~~h~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~p~n 217 (497)
T 3mc6_A 149 --YAL--HHRGITEP--EIIAPVTAHAGFDKAAYYFGMKLRHVELDPTTYQVDLGKVKKFIN-----KNTVLLVGSAPNF 217 (497)
T ss_dssp --HHH--HHSCCSSC--EEEEETTSCHHHHHHHHHSCCEEEEECBCTTTCSBCTTTTGGGCC-----SSEEEEEEETTCT
T ss_pred --HHH--hcCCCCCc--eEEEeCCccHHHHHHHHHcCCeEEEEecCcccCcCCHHHHHHHHh-----hCCEEEEEECCCC
Confidence 000 0133 4 799999999999999999999999999988 78999999999998 5799999999999
Q ss_pred ccccccCHHHHHHHHHHhCCeEEEeccccCCcc------------cccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYV------------EIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 245 ~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~------------~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
+||.+.|+++|+++|++||+++|+|+|++.+.. +++... .++|++++++||+++||.++|+++++
T Consensus 218 ptG~~~~l~~i~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~---~g~d~~~~s~~K~l~~~~~~g~~~~~ 294 (497)
T 3mc6_A 218 PHGIADDIEGLGKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRV---PGVTSISCDTHKYGFAPKGSSVIMYR 294 (497)
T ss_dssp TTCCCCSCTTTTTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTS---TTCCEEEEETTTTTCCCSSCEEEECS
T ss_pred CCCcCCCHHHHHHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccC---CCCcEEEECchhhcCCCCCceeEEec
Confidence 999999999999999999999999999874322 233322 37899999999999889889999998
Q ss_pred chhhccCCC----CCCccCCCceEeecccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHH
Q 038499 313 KALYQLGSF----PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEET 386 (609)
Q Consensus 313 ~~~~~l~~~----~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~ 386 (609)
++.. ... .+...++.. ......|+...... ..+++..+ ...|++.+.++..+
T Consensus 295 ~~~~--~~~~~~~~~~~~~~~~------------------~~~~~~g~~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~ 352 (497)
T 3mc6_A 295 NSDL--RMHQYYVNPAWTGGLY------------------GSPTLAGSRPGAIVVGCWATMVNM--GENGYIESCQEIVG 352 (497)
T ss_dssp SHHH--HTTTSCCBTTCTTSCB------------------CCSSSCSSCBHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
T ss_pred CHHH--HhhhhcccccccCCCc------------------CCcCcccCCcchhHHHHHHHHHHH--hHHHHHHHHHHHHH
Confidence 8763 222 111111110 00111234333222 23444433 44567888889999
Q ss_pred HHHHHHHHhCC-CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 387 YIERALERLLP-NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 387 l~~~~~~~L~~-~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
+++++.+.|.+ +|+++++++ ++.++++|.... ++..++.+.|.++ ||.++.+.
T Consensus 353 ~~~~l~~~L~~~~~g~~~~~~---~~~~~v~~~~~~------------------~~~~~l~~~L~~~-Gi~v~~~~---- 406 (497)
T 3mc6_A 353 AAMKFKKYIQENIPDLDIMGN---PRYSVISFSSKT------------------LNIHELSDRLSKK-GWHFNALQ---- 406 (497)
T ss_dssp HHHHHHHHHHHSCTTCEECSC---CCSSEEEEECTT------------------TTHHHHHHHHHTT-TCBCEECC----
T ss_pred HHHHHHHHHHhcCCCEEEecC---CCeeEEEEeCCC------------------CCHHHHHHHHHhC-CEEEecCC----
Confidence 99999999998 799999865 466777776543 4678899999764 99887432
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
.+..+|+++. .+|++|+++++++|+++++...
T Consensus 407 ----------------------------~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~~~~ 438 (497)
T 3mc6_A 407 ----------------------------KPVALHMAFT-RLSAHVVDEICDILRTTVQELK 438 (497)
T ss_dssp ----------------------------SSCCEEEECC-TTTTCTHHHHHHHHHHHHHHHT
T ss_pred ----------------------------CCCeEEEEEe-CCCHHHHHHHHHHHHHHHHHHH
Confidence 1356899998 6899999999999999987654
|
| >3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=264.75 Aligned_cols=315 Identities=17% Similarity=0.085 Sum_probs=231.9
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCC--CCcE--EEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCc
Q 038499 116 GQHTTNMVHEASNYIKKCLGGGQ--EDAM--IFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEH 191 (609)
Q Consensus 116 ~~~~~~~~~e~r~~ia~~~g~~~--~~~v--ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h 191 (609)
......+..++++++++++|.+. + ++ ++| +|+++++..++.++.- +.. ++ .. .++| +|+++...|
T Consensus 134 ~p~~~~le~~l~~~la~~~g~~~~~~-~v~~~~t-~ggt~a~~~al~a~~~--~g~-~~---~g-~~~d--~Vi~~~~~~ 202 (514)
T 3mad_A 134 WPSTAKFEAEVVAMTAHMLGGDAAGG-TVCGTVT-SGGTESLLLAMKTYRD--WAR-AT---KG-ITAP--EAVVPVSAH 202 (514)
T ss_dssp CHHHHHHHHHHHHHHHHHTTGGGGTS-CCEEEEE-SSHHHHHHHHHHHHHH--HHH-HH---HC-CSSC--EEEEETTSC
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCccC-CcceEEc-CcHHHHHHHHHHHHHH--Hhh-hh---cC-CCCC--eEEEeCccc
Confidence 34566788889999999999874 3 45 888 6666677777766520 000 00 00 0115 799999999
Q ss_pred cchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecc
Q 038499 192 HSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A 271 (609)
+++...++..|++++.|+.++++.+|+++|+++|+ +++++|++++++|+||.+.|+++|.++|++||+++|+|++
T Consensus 203 ~~~~~~~~~~G~~v~~v~~~~~~~~d~~~Le~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea 277 (514)
T 3mad_A 203 AAFDKAAQYFGIKLVRTPLDADYRADVAAMREAIT-----PNTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDAC 277 (514)
T ss_dssp THHHHHHHHHTCEEEEECBCTTSCBCHHHHHHHCC-----TTEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECT
T ss_pred hHHHHHHHHcCCeeEEeeeCCCCCCCHHHHHHHhc-----cCCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecc
Confidence 99999999999999999999999999999999998 5899999999999999999999999999999999999999
Q ss_pred ccCCcc-----------cccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCC----ccCCCceEeecc
Q 038499 272 ASGPYV-----------EIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPS----TCGGGTVNYVNG 336 (609)
Q Consensus 272 ~~~~~~-----------~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~----~~ggg~v~~~~~ 336 (609)
++.+.. +++... .++|++++|+||+++||.++|+++++++.. ...... +.++..
T Consensus 278 ~~~~~~~~~~~~g~~~~~~~~~~---~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~~~~------ 346 (514)
T 3mad_A 278 LGGFILPWAERLGYPVPPFDFRL---EGVTSVSADTHKYGYGAKGTSVILYRRPDL--LHYQYFIAADWPGGLY------ 346 (514)
T ss_dssp TTTTTHHHHHHTTCCCCCCSTTS---TTCCEEEECTTTTTCCCSSCEEEEESSHHH--HTTTCEEESSCTTCSE------
T ss_pred cccccchhHHhcCCCCCcccccC---CCCcEEEECchhccCCCCCeEEEEEeCHHH--hccccccccccCCCcc------
Confidence 886533 233222 378999999999988888899999998773 222111 111111
Q ss_pred cccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcce
Q 038499 337 FNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAI 414 (609)
Q Consensus 337 ~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~ 414 (609)
......|+++....+ .+++..+ ...+++.+.++..++++++.+.|+++++++++.+. .++
T Consensus 347 ------------~~~~~~gs~~~~~~~a~~aal~~l--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~----~~~ 408 (514)
T 3mad_A 347 ------------FSPTFAGSRPGALSATAWAAMLSL--GEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP----LWV 408 (514)
T ss_dssp ------------EESSSCSSCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC----SSE
T ss_pred ------------cCCccCCCCchHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC----eEE
Confidence 111224555444332 3333333 44567888899999999999999999999998763 346
Q ss_pred EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCC
Q 038499 415 LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVK 494 (609)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~ 494 (609)
++|.... .+..++.+.|.++ ||.+ +|..|
T Consensus 409 ~~~~~~~------------------~~~~~l~~~L~~~-Gi~v-~g~~~------------------------------- 437 (514)
T 3mad_A 409 IAVASDE------------------LNIYQVMEEMAGR-GWRL-NGLHR------------------------------- 437 (514)
T ss_dssp EEEECSS------------------SCHHHHHHHHHTT-TCBC-EEETT-------------------------------
T ss_pred EEEeCCC------------------CCHHHHHHHHHhc-CCEe-ccCCC-------------------------------
Confidence 6665433 4678899999775 9987 33211
Q ss_pred CcEEEEecC-CCCCHHHHHHHHHHHHHHHHhcc
Q 038499 495 PGWTRISFP-YYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 495 ~g~iRls~~-~~~t~eeid~ll~al~~v~~~~~ 526 (609)
++++|+++. ..++++++++++++|+++++...
T Consensus 438 ~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~~~~ 470 (514)
T 3mad_A 438 PPAFHVALTLRHTEPGVVDRFLADLQDAVAQVR 470 (514)
T ss_dssp TTEEEEECCGGGGSTTHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 468999997 44567999999999999987654
|
| >1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=266.67 Aligned_cols=315 Identities=15% Similarity=0.101 Sum_probs=222.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
.+.+..+.+.++++++++++|.+++ +++++ +|+++++..+..++. +++|| +|+++..+|+++
T Consensus 102 ~~~g~~~~~~~~~~~la~~~g~~~~-~i~~~-~g~taa~ea~~~a~~--------------~~~gd--~Viv~~~~h~s~ 163 (438)
T 1wyu_A 102 VSQGVLQATFEYQTMIAELAGLEIA-NASMY-DGATALAEGVLLALR--------------ETGRM--GVLVSQGVHPEY 163 (438)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTSSEE-CSCBS-SHHHHHHHHHHHHHH--------------HHTCC--EEEEETTSCHHH
T ss_pred hhhhHHHHHHHHHHHHHHHhCCCcc-ceEEe-CcHHHHHHHHHHHHh--------------cCCCC--EEEEcCccCHhH
Confidence 3556788899999999999999865 67787 677755555444332 35788 699999999999
Q ss_pred HHHHHH----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~~~~----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
..+|+. .|++++.++. +++.+|+++ |+ ++|++|+++++ |+||.+.|+++|+++||+||+++++|.
T Consensus 164 ~~~~~~~a~~~G~~v~~v~~-~~~~~d~~~----i~-----~~t~~v~i~~p-n~tG~~~~l~~i~~la~~~g~~vivd~ 232 (438)
T 1wyu_A 164 RAVLRAYLEAVGAKLLTLPL-EGGRTPLPE----VG-----EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVA 232 (438)
T ss_dssp HHHHHHHHHHTTCEEEEECC-BTTBCCCCC----CC-----TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEEcC-cCCccCHHH----hC-----CCeEEEEEECC-CCCeEEecHHHHHHHHHHcCCEEEEEe
Confidence 988754 7999999997 567788776 55 58999999998 999999999999999999999999775
Q ss_pred c-ccCCcccccCCCCCCCCccEEEEcCCC-----CCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 271 A-ASGPYVEIDVRSGQTDGYDAIFLSTHK-----FLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 271 A-~~~~~~~id~~~~~~~~~D~v~~S~hK-----~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
. ++.+....+ .. .++|++++|.|| |++|| ++|++++++++ ++.+++...|+ .+.. .......
T Consensus 233 d~~a~g~~~~~-~~---~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~--~~~l~~~~~g~-~~~~----~~~~~~~ 300 (438)
T 1wyu_A 233 DPLSLGVLKPP-GA---YGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAF--VRQLPGRLVSE-TVDV----EGRRGFI 300 (438)
T ss_dssp CTTGGGTBCCH-HH---HTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGG--GGGCCSCCEEE-EEBT----TSCEEEE
T ss_pred chhhccCcCCC-cc---CCCCEEEECCcccCCCccCCCC-CeeEEEEcHHH--HHhCCCceecc-cccc----CCCccee
Confidence 4 444433222 12 268999999888 78889 78999999988 44554433332 2110 0000001
Q ss_pred c----ccccccccCCChhH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceE
Q 038499 345 L----EDIEERESGGTPQV-----IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAIL 415 (609)
Q Consensus 345 ~----~~~~~r~~~gtp~i-----~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~ 415 (609)
+ .....+.+.+|+++ ...+.++..+......|.+.+.++.+++++++.+.|+++||++++.+. .....+
T Consensus 301 ~~l~~~~~~~r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~ 378 (438)
T 1wyu_A 301 LTLQAREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK--PFFNEF 378 (438)
T ss_dssp ECCGGGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS--SBCSEE
T ss_pred eeccccccccchhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCC--CeEEEE
Confidence 1 01122444566654 222333311221234568889999999999999999999999998752 222333
Q ss_pred EEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEe--ccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 416 SFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA--RGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v--~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
.+.. + .+..++++.|.+ .||.+ ++|..|.
T Consensus 379 ~~~~-~------------------~~~~~~~~~L~~-~gi~v~~~~~~~~~----------------------------- 409 (438)
T 1wyu_A 379 ALAL-P------------------KDPEAVRRALAE-RGFHGATPVPREYG----------------------------- 409 (438)
T ss_dssp EEEC-S------------------SCHHHHHHHHHH-TTCCCCEECCTTSC-----------------------------
T ss_pred EEeC-C------------------CCHHHHHHHHHH-CCceeccccccccC-----------------------------
Confidence 3322 1 256789999976 49998 5454332
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 494 KPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 494 ~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
++++|||++.++|++|+++++++|++++
T Consensus 410 -~~~lRis~~~~~t~edi~~~~~~l~~~l 437 (438)
T 1wyu_A 410 -ENLALFAATELHEEEDLLALREALKEVL 437 (438)
T ss_dssp -SSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred -CCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence 3799999999999999999999998763
|
| >3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.1e-28 Score=252.05 Aligned_cols=334 Identities=12% Similarity=0.065 Sum_probs=239.0
Q ss_pred ccCCCCCCceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCC
Q 038499 69 FDSPFGKRRLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGS 147 (609)
Q Consensus 69 ~~~p~g~~~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~s 147 (609)
+..+.|+ .+++|+.+... +.++.|.+++.+.+...+. + . .....++++.+++++|++++ +|++| +
T Consensus 10 ~~~~~~~-~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~------y-~----~~~~~~l~~~la~~~~~~~~-~i~~~-~ 75 (354)
T 3ly1_A 10 FTAPSTD-NPIRINFNENPLGMSPKAQAAARDAVVKANR------Y-A----KNEILMLGNKLAAHHQVEAP-SILLT-A 75 (354)
T ss_dssp CCCCCSS-SCEECSSCCCSSCCCHHHHHHHHHTGGGTTS------C-C----HHHHHHHHHHHHHHTTSCGG-GEEEE-S
T ss_pred ccCCCCC-ceEEccCCCCCCCCCHHHHHHHHHHHhhCcC------C-C----CCchHHHHHHHHHHhCCChH-HEEEe-C
Confidence 3444443 57788766544 3677899999887753211 1 1 22467899999999998876 89998 7
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhh
Q 038499 148 GTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLEL 227 (609)
Q Consensus 148 Gttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~ 227 (609)
|+++++..++..+ +++|| .|++..+.|+++...++..|++++.++.++++.+|+++|++++++
T Consensus 76 g~~~a~~~~~~~l---------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~~ 138 (354)
T 3ly1_A 76 GSSEGIRAAIEAY---------------ASLEA--QLVIPELTYGDGEHFAKIAGMKVTKVKMLDNWAFDIEGLKAAVAA 138 (354)
T ss_dssp HHHHHHHHHHHHH---------------CCTTC--EEEEESSSCTHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHHHT
T ss_pred ChHHHHHHHHHHH---------------hCCCC--eEEECCCCchHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhcc
Confidence 8888999988876 37888 699999999999989999999999999988889999999999984
Q ss_pred hccCCCceEEEEecccCccccccCHHHHHHHHHH--hCCeEEEeccccCCcccc---cCCC-CCCC-CccEEEEcCCCCC
Q 038499 228 YKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVEI---DVRS-GQTD-GYDAIFLSTHKFL 300 (609)
Q Consensus 228 ~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~--~g~~vivD~A~~~~~~~i---d~~~-~~~~-~~D~v~~S~hK~l 300 (609)
+ ++++++++++++||||.+.|.+++.++++. ||+++|+|++++.....- .+.. .... +.++++.|+||++
T Consensus 139 ~---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 215 (354)
T 3ly1_A 139 Y---SGPSIVYLVNPNNPTGTITPADVIEPWIASKPANTMFIVDEAYAEFVNDPRFRSISPMITQGAENIILLKTFSKIH 215 (354)
T ss_dssp C---SSCEEEEEESSCTTTCCCCCHHHHHHHHHTCCTTEEEEEECTTGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTT
T ss_pred C---CCCCEEEEeCCCCCcCCCcCHHHHHHHHHhCCCCeEEEEeccHHHhccccccCCHHHHhhhcCCCEEEEeeChhhc
Confidence 2 378999999999999999999988888887 999999999987432211 1100 0111 4568899999999
Q ss_pred CCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHH
Q 038499 301 GGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEV 379 (609)
Q Consensus 301 ggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~ 379 (609)
|.| .++|++++++++. +.+... ....+++......+... +.+....+.
T Consensus 216 g~~G~r~G~~~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~a~~~~--l~~~~~~~~ 264 (354)
T 3ly1_A 216 AMAGMRVGYAVAHPTVI--ALMGRY---------------------------VAGEKINFSGVDAALAS--MNDSAFITY 264 (354)
T ss_dssp CCGGGCCEEEECCHHHH--HHHGGG---------------------------TTCSCCCHHHHHHHHHH--TTCHHHHHH
T ss_pred cChhhhheeeecCHHHH--HHHHHh---------------------------cCCCCCCHHHHHHHHHH--hcCHHHHHH
Confidence 733 4589999988772 222111 00123333332221111 112234567
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc
Q 038499 380 IKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG 459 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~ 459 (609)
+.++.+++++++.+.|+++ ++.+..+ ...++++. .+ -+...+.+.|.+ .||.++
T Consensus 265 ~~~~~~~~~~~l~~~l~~~-~~~~~~~----~~~~~~~~-~~------------------~~~~~~~~~l~~-~gi~v~- 318 (354)
T 3ly1_A 265 SKKSNDVSRQILLKALEDL-KLPYLPS----EGNFVFHQ-LV------------------VPLKDYQTHMAD-AGVLIG- 318 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCBCCC----CSSEEEEE-CS------------------SCHHHHHHHHHH-TTEECC-
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeECCC----CceEEEEE-CC------------------CCHHHHHHHHHH-CCEEEe-
Confidence 7788888899999988876 6665532 23444333 33 146788888876 699999
Q ss_pred CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 460 GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 460 G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
|..|. .++++||+++ +++|+++++++|+++++..
T Consensus 319 g~~~~-----------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~~~ 352 (354)
T 3ly1_A 319 RAFPP-----------------------------ADNWCRISLG---TPQEMQWVADTMREFRKKS 352 (354)
T ss_dssp CCCTT-----------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHTT
T ss_pred ecCCC-----------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHhh
Confidence 76543 1489999987 8999999999999998764
|
| >3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-28 Score=254.33 Aligned_cols=323 Identities=11% Similarity=0.007 Sum_probs=235.6
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
+.+++|+.+... +.++.|.+++.+.+...+.++... ..++|+.+++++|++++ +|++| +|+++++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~-~v~~~-~g~~~a~~ 96 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANKAHLYPDDS-----------MIELKSTLAQKYKVQNE-NIIIG-AGSDQVIE 96 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGGTTSCCCTT-----------CHHHHHHHHHHHTCCGG-GEEEE-SSHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHhhccCCCCC-----------hHHHHHHHHHHhCCCcc-eEEEC-CCHHHHHH
Confidence 367888866443 467889999988776443333221 13789999999998776 89998 78888899
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec-CCCCCCCHHHHHHHHhhhccCCC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL-DDDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~~g~ld~e~L~~al~~~~~~~~ 233 (609)
.++..+ +++|| .|+++.+.|+++...++..|++++.+++ ++++ +|+++|+++++ ++
T Consensus 97 ~~~~~l---------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~-~d~~~l~~~l~-----~~ 153 (365)
T 3get_A 97 FAIHSK---------------LNSKN--AFLQAGVTFAMYEIYAKQCGAKCYKTQSITHNL-DEFKKLYETHK-----DE 153 (365)
T ss_dssp HHHHHH---------------CCTTC--EEEECSSCCTHHHHHHHHHTCEEEECSSSSCCH-HHHHHHHHHTT-----TT
T ss_pred HHHHHH---------------hCCCC--EEEEeCCChHHHHHHHHHcCCEEEEEecCCCCC-CCHHHHHHHhC-----CC
Confidence 888876 37888 6999999999999999999999999998 5677 99999999998 68
Q ss_pred ceEEEEecccCccccccCHHHHHHHHH--HhCCeEEEecccc------CCcccccCCCC-CCCCccEEEEcCCCCCCCC-
Q 038499 234 PILGSFSACSNVTGIYSDTRSIARLLH--QYGGFACFDFAAS------GPYVEIDVRSG-QTDGYDAIFLSTHKFLGGP- 303 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~dl~~I~~la~--~~g~~vivD~A~~------~~~~~id~~~~-~~~~~D~v~~S~hK~lggp- 303 (609)
++++++++++||||.+.|.+++.++++ ++|+++|+|++++ .+..+.+.... ...+.++++.|+||++|.|
T Consensus 154 ~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 233 (365)
T 3get_A 154 IKLIFLCLPNNPLGECLDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGG 233 (365)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTT
T ss_pred CCEEEEcCCCCCCCCCcCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHhcCcc
Confidence 999999999999999999999988888 7799999999987 32222221110 1124578899999999744
Q ss_pred CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHH
Q 038499 304 GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQ 383 (609)
Q Consensus 304 ~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~ 383 (609)
.++|++++++++. +.+... ....+++......+.. .+.+..+.+.+.++
T Consensus 234 ~r~G~~~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~ 282 (365)
T 3get_A 234 LRIGYGIANANII--SAFYKL---------------------------RAPFNVSNLALKAAVA--AMDDDEFTEKTLEN 282 (365)
T ss_dssp TCCEEEEECHHHH--HHHHHH---------------------------SCTTCSCHHHHHHHHH--HHTCHHHHHHHHHH
T ss_pred hheEEEEcCHHHH--HHHHHh---------------------------cCCCCcCHHHHHHHHH--HhCCHHHHHHHHHH
Confidence 3589999988772 222110 0011223222221111 11222346777888
Q ss_pred HHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCccc
Q 038499 384 EETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
.+++++++.+.|+++ ++++..+ ...++++.+.. .+...+.+.|.+ .||.+++|..|
T Consensus 283 ~~~~~~~l~~~l~~~-g~~~~~~----~~~~~~~~~~~------------------~~~~~~~~~l~~-~gi~v~~g~~~ 338 (365)
T 3get_A 283 NFSQMELYKEFAKKH-NIKIIDS----YTNFITYFFDE------------------KNSTDLSEKLLK-KGIIIRNLKSY 338 (365)
T ss_dssp HHHHHHHHHHHHHHT-TCEECCC----SSSEEEEECSS------------------SCHHHHHHHHHT-TTEECEECGGG
T ss_pred HHHHHHHHHHHHHhC-CCEECCC----CCeEEEEECCC------------------CCHHHHHHHHHH-CCEEEEECccC
Confidence 888999999999887 8887654 23444433332 157788898876 59999988655
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
. ++++||+++ +++|+++++++|++++
T Consensus 339 ~------------------------------~~~iRis~~---~~~~i~~l~~~l~~~l 364 (365)
T 3get_A 339 G------------------------------LNAIRITIG---TSYENEKFFTEFDKIL 364 (365)
T ss_dssp T------------------------------CSEEEEECC---CHHHHHHHHHHHHHHH
T ss_pred C------------------------------CCEEEEEcC---CHHHHHHHHHHHHHHh
Confidence 3 279999997 8999999999999875
|
| >3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=251.46 Aligned_cols=327 Identities=13% Similarity=0.023 Sum_probs=234.8
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcC--CccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC-CCCCcEEEeCChHHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLP--FYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG-GQEDAMIFCGSGTTA 151 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~--~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~-~~~~~vift~sGtta 151 (609)
+.+++|+.+.+. +.++.|.+++.+.+.. ....+. . ...++++.+++++|. +++ +|++| +|+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-----~------~~~~l~~~la~~~g~~~~~-~i~~~-~g~t~ 96 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-----P------SSEALRAKLKEVMQVPAGM-EVLLG-NGSDE 96 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-----C------CHHHHHHHHHHHHTCCTTC-EEEEE-EHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-----C------cHHHHHHHHHHHhCCCCcc-eEEEc-CCHHH
Confidence 467888877654 4567888888887652 111111 1 156889999999999 444 89998 78888
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~ 231 (609)
++..++..+ +++|| .|++..+.|+++...++..|++++.++.++++.+|+++|++++++
T Consensus 97 a~~~~~~~~---------------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~l~~---- 155 (367)
T 3euc_A 97 IISMLALAA---------------ARPGA--KVMAPVPGFVMYAMSAQFAGLEFVGVPLRADFTLDRGAMLAAMAE---- 155 (367)
T ss_dssp HHHHHHHHT---------------CCTTC--EEEEEESCSCCSCHHHHTTTCEEEEEECCTTSCCCHHHHHHHHHH----
T ss_pred HHHHHHHHH---------------cCCCC--EEEEcCCCHHHHHHHHHHcCCeEEEecCCCCCCCCHHHHHHHhhc----
Confidence 999988876 37888 699999999999989999999999999998889999999999984
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHh--CCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCC-CC
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQY--GGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGP-GS 305 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~--g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp-~g 305 (609)
.+++++++++++||||.+.| +++|+++|++| |+++|+|++++.....-.+......+.++++.|+||+ +.+ .+
T Consensus 156 ~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~-~~~G~r 234 (367)
T 3euc_A 156 HQPAIVYLAYPNNPTGNLFDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKL-GLAGIR 234 (367)
T ss_dssp HCCSEEEEESSCTTTCCCCCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCT-TSCSCC
T ss_pred cCCCEEEEcCCCCCCCCCCCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhh-cccccC
Confidence 27899999999999999975 66788889999 9999999997743211101111112456889999999 544 35
Q ss_pred cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 038499 306 PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (609)
+|++++++++. +.+... ....+++......+. +. +......+.+.++.+
T Consensus 235 ~G~~~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~a~~-~~-l~~~~~~~~~~~~~~ 283 (367)
T 3euc_A 235 LGYVAGDPQWL--EQLDKV---------------------------RPPYNVNVLTEATAL-FA-LEHVAVLDEQAAQLR 283 (367)
T ss_dssp EEEEEECHHHH--HHHGGG---------------------------CCSSCCCHHHHHHHH-HH-HTTHHHHHHHHHHHH
T ss_pred ceeeeeCHHHH--HHHHHh---------------------------CCCCCCCHHHHHHHH-HH-hcCHHHHHHHHHHHH
Confidence 89999988772 222111 001122322222211 11 112234577788889
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
++++++.+.|+++|++++..+ ...++++. .+ +...+.+.|.+ .||.+++|..|.+
T Consensus 284 ~~~~~l~~~l~~~~g~~~~~~----~~~~~~~~-~~-------------------~~~~l~~~l~~-~gi~v~~~~~~~~ 338 (367)
T 3euc_A 284 AERSRVAEGMAAHGGVTVFPS----AANFLLAR-VP-------------------DAAQTFDRLLA-RKVLIKNVSKMHP 338 (367)
T ss_dssp HHHHHHHHHHHTSTTCEECCC----SSSEEEEE-CS-------------------CHHHHHHHHHT-TTEECEECGGGCG
T ss_pred HHHHHHHHHHHhCCCcEECCC----CCeEEEEE-CC-------------------CHHHHHHHHHH-CCeEEEECCccCC
Confidence 999999999999999986543 23343332 22 35778888855 6999998877652
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
. .++++|||++ +++|+++++++|+++++
T Consensus 339 ~---------------------------~~~~iRis~~---~~~~i~~~~~~l~~~l~ 366 (367)
T 3euc_A 339 L---------------------------LANCLRVTVS---TPEENAQFLEAFAASLQ 366 (367)
T ss_dssp G---------------------------GTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred C---------------------------CCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence 1 2589999987 99999999999998753
|
| >3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.96 E-value=9.9e-28 Score=254.55 Aligned_cols=353 Identities=12% Similarity=0.021 Sum_probs=245.6
Q ss_pred ccccCCCCCCceEEecCCCC-CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEE
Q 038499 67 AEFDSPFGKRRLTYADHTAS-GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMI 143 (609)
Q Consensus 67 ~~~~~p~g~~~~vyld~~a~-g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vi 143 (609)
..+.+..|+ +++.+..+.. .+.++.|.+++.+.+.... +. + +....++++++++++++.+| .+++ +|+
T Consensus 19 ~~~~d~~g~-~~i~~~~~~~~~~~~~~v~~a~~~~~~~~~---~~--y--~~~~~~l~~~la~~l~~~~g~~~~~~-~i~ 89 (391)
T 3dzz_A 19 SIKWGVLKE-KELPMWIAEMDFKIAPEIMASMEEKLKVAA---FG--Y--ESVPAEYYKAVADWEEIEHRARPKED-WCV 89 (391)
T ss_dssp BTTTTTCCT-TCEECCSSCCSSCCCHHHHHHHHHHHTTCC---CC--C--BCCCHHHHHHHHHHHHHHHSCCCCGG-GEE
T ss_pred ccceeccCC-CceeccccCCCCCCCHHHHHHHHHHHhcCc---CC--C--CCCCHHHHHHHHHHHHHHhCCCCCHH-HEE
Confidence 334444453 5666665433 3567889999988775321 10 1 11135677888889999888 5555 899
Q ss_pred EeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-C--CCCCHHH
Q 038499 144 FCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-D--GLLDIEA 220 (609)
Q Consensus 144 ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~--g~ld~e~ 220 (609)
+| +|+++++..++..+ +++|| .|+++.+.|+++...++..|++++.++.+. + +.+|+++
T Consensus 90 ~~-~g~~~a~~~~~~~l---------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~ 151 (391)
T 3dzz_A 90 FA-SGVVPAISAMVRQF---------------TSPGD--QILVQEPVYNMFYSVIEGNGRRVISSDLIYENSKYSVNWAD 151 (391)
T ss_dssp EE-SCHHHHHHHHHHHH---------------SCTTC--EEEECSSCCHHHHHHHHHTTCEEEECCCEEETTEEECCHHH
T ss_pred EC-CCHHHHHHHHHHHh---------------CCCCC--eEEECCCCcHHHHHHHHHcCCEEEEeeeeecCCceeecHHH
Confidence 98 78888899888876 37888 699999999999999999999999999852 2 3489999
Q ss_pred HHHHHhhhccCCCceEEEEecccCccccc---cCHHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCcc--E
Q 038499 221 LRSKLELYKDAKRPILGSFSACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYD--A 291 (609)
Q Consensus 221 L~~al~~~~~~~~~~lv~~s~~sn~TG~~---~dl~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D--~ 291 (609)
|++++++ ++++++++++++||||.+ .++++|+++|++||+++|+|++++... ...++..+.....| +
T Consensus 152 l~~~l~~----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i 227 (391)
T 3dzz_A 152 LEEKLAT----PSVRMMVFCNPHNPIGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVV 227 (391)
T ss_dssp HHHHHTS----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEE
T ss_pred HHHHHhc----cCceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEE
Confidence 9999974 579999999999999999 568889999999999999999987532 22333332111245 8
Q ss_pred EEEcCCCCCCCC-CCcEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHH
Q 038499 292 IFLSTHKFLGGP-GSPGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAF 369 (609)
Q Consensus 292 v~~S~hK~lggp-~g~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~ 369 (609)
++.|+||++|.| .++|+++++ +++ .+.+... .......+++......+...+
T Consensus 228 ~~~s~sK~~g~~G~r~G~~~~~~~~~--~~~~~~~------------------------~~~~~~~~~~~~~~~a~~~~l 281 (391)
T 3dzz_A 228 SLISPSKTFNLAALHAACAIIPNPDL--RARAEES------------------------FFLAGIGEPNLLAIPAAIAAY 281 (391)
T ss_dssp EEECSHHHHTCTTTCCEEEECCSHHH--HHHHHHH------------------------HHHHTCSSCCTTHHHHHHHHH
T ss_pred EEEeChhhccccchhheEEEECCHHH--HHHHHHH------------------------HHhhccCCCCHHHHHHHHHHH
Confidence 999999999733 458999997 666 2222110 000111122222221111111
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhCC-CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHH
Q 038499 370 WVKEYIGHEVIKKQEETYIERALERLLP-NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATL 448 (609)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~~~~~L~~-~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 448 (609)
. ......+.+.++.+++++++.+.|++ +|++++..+. .+++.+...+ .. ..+...+.+.
T Consensus 282 ~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~----~~~~~~~~~~-~~--------------~~~~~~~~~~ 341 (391)
T 3dzz_A 282 E-EGHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLDSN----ASYLAWVDIS-AL--------------GMNAEDFCKY 341 (391)
T ss_dssp H-HCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECCCC----BSSEEEEECG-GG--------------CSCHHHHHHH
T ss_pred h-ccHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEeccC----ceEEEEEehh-hc--------------CCCHHHHHHH
Confidence 1 11223567788888899999999988 8999987652 3444443333 10 1367889998
Q ss_pred HhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 449 LNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 449 L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
|.+++||.+++|..|..+ .++++||+++ +++++++.++++|+++++..
T Consensus 342 l~~~~gi~v~~g~~~~~~---------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l~~~ 389 (391)
T 3dzz_A 342 LREKTGLIISAGNGYRGN---------------------------GHEFVRINLA--CPKELVIDGMQRLKQGVLNL 389 (391)
T ss_dssp HHHHHCEECEESGGGCTT---------------------------GGGEEEEECC--SCHHHHHHHHHHHHHHHHTC
T ss_pred HHHhCCEEEeCchhhCCC---------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 865579999999877632 1489999998 69999999999999988754
|
| >1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=256.16 Aligned_cols=333 Identities=16% Similarity=0.075 Sum_probs=234.9
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
.++|||++..++.++.+.+++.+.+.. |.. +......++++++++++++|.+++ +|++| +|+++++..+
T Consensus 14 ~~i~l~~~~~~~~~~~v~~a~~~~~~~-~~~--------~~g~~~~~~~~~~~l~~~~g~~~~-~v~~~-~g~t~a~~~~ 82 (359)
T 1svv_A 14 KPYSFVNDYSVGMHPKILDLMARDNMT-QHA--------GYGQDSHCAKAARLIGELLERPDA-DVHFI-SGGTQTNLIA 82 (359)
T ss_dssp -CEECSCSCSSCCCHHHHHHHHHHTTC-CCC--------STTCSHHHHHHHHHHHHHHTCTTS-EEEEE-SCHHHHHHHH
T ss_pred eeEEecCCCcCCCCHHHHHHHHHHHhh-ccc--------cccccHHHHHHHHHHHHHhCCCCc-cEEEe-CCchHHHHHH
Confidence 579999999899999999999887753 111 112346788999999999998766 89998 6777788888
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH--HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhc--cCC
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL--SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYK--DAK 232 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~--~~~ 232 (609)
+..+ +++|| .|+++.++|+++.. .++..|++++.++.+ ++.+|+++|++++++.. ...
T Consensus 83 ~~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~ 144 (359)
T 1svv_A 83 CSLA---------------LRPWE--AVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMV 144 (359)
T ss_dssp HHHH---------------CCTTE--EEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSC
T ss_pred HHHH---------------hCCCC--EEEEcccchHHHHHHHHHhcCCCeeEEEeCC-CCeecHHHHHHHHHHHHhccCC
Confidence 7776 36777 79999999999877 477889999999986 67899999999998520 011
Q ss_pred CceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccc---cCCcccccCCCCCC-CCccEEEEcCCCCCCCCCC
Q 038499 233 RPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAA---SGPYVEIDVRSGQT-DGYDAIFLSTHKFLGGPGS 305 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~---~~~~~~id~~~~~~-~~~D~v~~S~hK~lggp~g 305 (609)
++++++++++ ||||.+.| +++|.++|++||+++|+|+++ +.+..+.+...... ...|++++++||+ |+|.|
T Consensus 145 ~~~~v~~~~~-~ptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~~ 222 (359)
T 1svv_A 145 IPKLVYISNT-TEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMFG 222 (359)
T ss_dssp EEEEEEEESS-CTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSSC
T ss_pred CceEEEEEcC-CCCceecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCCc
Confidence 3889999998 78999998 888999999999999999998 44444433321100 1469999999998 66888
Q ss_pred cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q 038499 306 PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~ 385 (609)
+|++++++++ ++.+.+....++. ....+.+...+ . .++ + +..+.+.+.++.+
T Consensus 223 ~g~l~~~~~~--~~~~~~~~~~~~~--------------------~~~~~~~~~~~---~-~~~-l-~~~~~~~~~~~~~ 274 (359)
T 1svv_A 223 EALIILNDAL--KPNARHLIKQRGA--------------------LMAKGWLLGIQ---F-EVL-M-KDNLFFELGAHSN 274 (359)
T ss_dssp EEEEECSGGG--CTTHHHHHHHTTC--------------------CCTTTHHHHHH---H-HHH-T-STTHHHHHHHHHH
T ss_pred eEEEEEcccH--HHHHHHHHhcCCc--------------------ccccchhhHHH---H-HHH-H-hhhhHHHHHHHHH
Confidence 9999999887 4443221100000 00011122222 1 112 2 2344677888899
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
++++++.+.| +.+++++..+. ...++ +...+ .++.+.|.+++||.+.+. .
T Consensus 275 ~~~~~l~~~L-~~~~~~~~~~~---~~~~~-~~~~~---------------------~~~~~~l~~~~gi~v~~~-~--- 324 (359)
T 1svv_A 275 KMAAILKAGL-EACGIRLAWPS---ASNQL-FPILE---------------------NTMIAELNNDFDMYTVEP-L--- 324 (359)
T ss_dssp HHHHHHHHHH-HHTTCCBSSCC---SSSEE-CBEEE---------------------HHHHHHHTTTEECEEEEE-E---
T ss_pred HHHHHHHHHh-ccCCeEEccCC---ccceE-EEEcC---------------------HHHHHHHHHhcCEEEEec-c---
Confidence 9999999999 56788877552 22332 22111 467788877669988210 0
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+. .++++||++++.++++|+++++++|+++++.
T Consensus 325 ~~--------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~ 357 (359)
T 1svv_A 325 KD--------------------------GTCIMRLCTSWATEEKECHRFVEVLKRLVAS 357 (359)
T ss_dssp TT--------------------------TEEEEEEECCTTCCHHHHHHHHHHHHHC---
T ss_pred cC--------------------------CCceEEEEccCcCCHHHHHHHHHHHHHHHhc
Confidence 00 1479999999999999999999999987653
|
| >4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-28 Score=255.15 Aligned_cols=339 Identities=12% Similarity=0.058 Sum_probs=240.3
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal 153 (609)
+++.+..+... +.++.|.+++.+.+... .+. + +....++++++++++++.+| .+++ +|++| +|+++++
T Consensus 33 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~---~~~--y--~~~~~~~~~~l~~~l~~~~g~~~~~~-~v~~~-~g~~~a~ 103 (391)
T 4dq6_A 33 DLLPMWVADMDFKAAPCIIDSLKNRLEQE---IYG--Y--TTRPDSYNESIVNWLYRRHNWKIKSE-WLIYS-PGVIPAI 103 (391)
T ss_dssp CSEECCSSSCSSCCCHHHHHHHHHHHTTC---CCC--C--BCCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SCHHHHH
T ss_pred CceeccccCCCCCCCHHHHHHHHHHHhCC---CCC--C--CCCCHHHHHHHHHHHHHHhCCCCcHH-HeEEc-CChHHHH
Confidence 56677655443 56788999998877531 111 1 11236778899999999999 5565 89998 7888889
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC--CC--CCCCHHHHHHHHhhhc
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD--DD--GLLDIEALRSKLELYK 229 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~--g~ld~e~L~~al~~~~ 229 (609)
..++..+ +++|| .|++..+.|+++...++..|++++.++.+ .+ +.+|+++|+++++
T Consensus 104 ~~~~~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~--- 163 (391)
T 4dq6_A 104 SLLINEL---------------TKAND--KIMIQEPVYSPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK--- 163 (391)
T ss_dssp HHHHHHH---------------SCTTC--EEEECSSCCTHHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT---
T ss_pred HHHHHHh---------------CCCCC--EEEEcCCCCHHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh---
Confidence 9888876 37888 69999999999999999999999999987 33 3589999999998
Q ss_pred cCCCceEEEEecccCccccc---cCHHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCC--CCccEEEEcCCCCC
Q 038499 230 DAKRPILGSFSACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQT--DGYDAIFLSTHKFL 300 (609)
Q Consensus 230 ~~~~~~lv~~s~~sn~TG~~---~dl~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~--~~~D~v~~S~hK~l 300 (609)
+ ++++++++++||||.+ .++++|+++|++||+++|+|++++... ...++..+.. .+..+++.|+||++
T Consensus 164 --~-~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~ 240 (391)
T 4dq6_A 164 --D-VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTF 240 (391)
T ss_dssp --T-EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHH
T ss_pred --c-CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhc
Confidence 5 8999999999999999 457889999999999999999987632 2222322210 02338889999999
Q ss_pred CCC-CCcEEEEEec-hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHH
Q 038499 301 GGP-GSPGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHE 378 (609)
Q Consensus 301 ggp-~g~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~ 378 (609)
|.| .++|++++++ ++ .+.+... ......++++......+...+. ......+
T Consensus 241 g~~G~r~G~~~~~~~~~--~~~~~~~------------------------~~~~~~~~~~~~~~~a~~~~l~-~~~~~~~ 293 (391)
T 4dq6_A 241 NIAGLQSSYVVLPDEKD--YKLLDDA------------------------FTRIDIKRNNCFSLVATEASYN-NGESWLE 293 (391)
T ss_dssp TCGGGCCEEEECCSHHH--HHHHHHH------------------------HHHTTCCCCCHHHHHHHHHHHH-HCHHHHH
T ss_pred cCcccceEEEEeCCHHH--HHHHHHH------------------------HHhhcCCCCCHHHHHHHHHHHh-chHHHHH
Confidence 734 3589999886 55 2222110 0111123444444322222221 1112356
Q ss_pred HHHHHHHHHHHHHHHHhCC-CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEe
Q 038499 379 VIKKQEETYIERALERLLP-NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA 457 (609)
Q Consensus 379 ~i~~~~~~l~~~~~~~L~~-~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v 457 (609)
.+.++.+++++++.+.|++ +|++.+..+ ..+++.+...+ .. ..+...+.+.|.+++||.+
T Consensus 294 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~-~~--------------~~~~~~~~~~l~~~~gi~v 354 (391)
T 4dq6_A 294 SFLEYLESNIDFAIKYINENMPKLKVRKP----EGTYLLWVDFS-AL--------------GLSDEELESILVQKGKVAL 354 (391)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTSEECCC----SBSSEEEEECG-GG--------------CCCHHHHHHHHHHTTCEEC
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCEecCC----CccEEEEEEhh-hc--------------CCCHHHHHHHHHHhCCEEe
Confidence 7778888899999999987 789988765 23444433333 10 1467889999977669999
Q ss_pred ccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 458 RGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 458 ~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
++|..|..+ .++++||+++ +++++++.++++|++++
T Consensus 355 ~~g~~~~~~---------------------------~~~~iRis~~--~~~~~i~~~l~~l~~~l 390 (391)
T 4dq6_A 355 NQGNSFGIG---------------------------GSGYQRINLA--CPRSMLEEALIRIKNAI 390 (391)
T ss_dssp EEGGGGCTT---------------------------CTTEEEEECC--SCHHHHHHHHHHHHHHH
T ss_pred eCchhhCCC---------------------------CCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence 998877622 2589999998 69999999999998875
|
| >3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-28 Score=259.65 Aligned_cols=346 Identities=13% Similarity=0.034 Sum_probs=242.7
Q ss_pred ceEEecCCCCC--CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHH
Q 038499 77 RLTYADHTASG--RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAA 152 (609)
Q Consensus 77 ~~vyld~~a~g--~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaa 152 (609)
.++.|..+... +.++.|.+++.+.+...... .|....+..++++++++++++++|.+ ++++|++| +|++++
T Consensus 40 ~~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~----~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~-~g~~~a 114 (407)
T 3nra_A 40 RPVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQ----AYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIIT-PGTQGA 114 (407)
T ss_dssp CCEETTSCCTTTSCCCTTHHHHHHHHHHHTHHH----HSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHH
T ss_pred ceeeecCcCCCCCCCcHHHHHHHHHHHhcCCCC----CcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEe-CCcHHH
Confidence 35666543222 46677888888777532100 01112234677888999999999975 32389998 788888
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec------CCCCCCCHHHHHHHHh
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL------DDDGLLDIEALRSKLE 226 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~------~~~g~ld~e~L~~al~ 226 (609)
+..++..+ +++|| .|+++.+.|+++...++..|++++.++. +.++.+|+++|+++++
T Consensus 115 ~~~~~~~l---------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 177 (407)
T 3nra_A 115 LFLAVAAT---------------VARGD--KVAIVQPDYFANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFK 177 (407)
T ss_dssp HHHHHHTT---------------CCTTC--EEEEEESCCTHHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHH
T ss_pred HHHHHHHh---------------CCCCC--EEEEcCCcccchHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHh
Confidence 99888765 37888 6999999999999999999999999998 3577899999999998
Q ss_pred hhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCC--CCCccEEEEcCC
Q 038499 227 LYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQ--TDGYDAIFLSTH 297 (609)
Q Consensus 227 ~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~--~~~~D~v~~S~h 297 (609)
.+++++++++++||||.+.| +++|+++|++||+++|+|++++... ....+.... ..+.++++.|+|
T Consensus 178 -----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~s 252 (407)
T 3nra_A 178 -----AGARVFLFSNPNNPAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPS 252 (407)
T ss_dssp -----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSS
T ss_pred -----hCCcEEEEcCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcc
Confidence 57899999999999999999 8899999999999999999987632 122222211 124568899999
Q ss_pred CCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcC
Q 038499 298 KFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIG 376 (609)
Q Consensus 298 K~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g 376 (609)
|++|.+ .++|++++++++ ++.+... ......+++.+.+. ++.+++......
T Consensus 253 K~~g~~G~r~G~~~~~~~~--~~~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l~~~~~~ 304 (407)
T 3nra_A 253 KTESLSGYRLGVAFGSRAI--IARMEKL------------------------QAIVSLRAAGYSQA--VLRGWFDEAPGW 304 (407)
T ss_dssp STTCCGGGCCEEEEECHHH--HHHHHHH------------------------HHHHTSSSCHHHHG--GGGGTTCCCTTH
T ss_pred cccCCCeeeEEEEEcCHHH--HHHHHHH------------------------HhhhccCCChHHHH--HHHHHHhccchH
Confidence 999833 358999998877 2222110 11111222222221 111111001123
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcE
Q 038499 377 HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQ 456 (609)
Q Consensus 377 ~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~ 456 (609)
.+...++.+++++++.+.|+++|++.+..+ ..+.+.+...+ .. ..+...+.+.|.+++||.
T Consensus 305 ~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~~~~~~~~~~-~~--------------~~~~~~~~~~l~~~~gi~ 365 (407)
T 3nra_A 305 MEDRIARHQAIRDELLHVLRGCEGVFARTP----QAGSYLFPRLP-KL--------------AVAPAEFVKILRLQAGVV 365 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSTTCBCCCC----SBSSEECCBCC-CB--------------SSCHHHHHHHHHHHHCEE
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCceeccC----CeeEEEEEeCC-CC--------------CCCHHHHHHHHHHhCCEE
Confidence 567778888899999999999888887655 23344443333 10 146778888887767999
Q ss_pred eccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 457 ARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 457 v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+++|..|... .++++||+++. ++++++.++++|+++++..
T Consensus 366 v~~g~~~~~~---------------------------~~~~iRis~~~--~~~~i~~~~~~l~~~~~~~ 405 (407)
T 3nra_A 366 VTPGTEFSPH---------------------------TADSVRLNFSQ--DHEAAVAAARRIVTLVERY 405 (407)
T ss_dssp CEEGGGTCTT---------------------------CTTBEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred EeCchhhCCC---------------------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHHHh
Confidence 9998877621 25899999984 9999999999999988764
|
| >2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=8.4e-28 Score=256.67 Aligned_cols=349 Identities=12% Similarity=0.089 Sum_probs=235.8
Q ss_pred cCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE-eCCh
Q 038499 70 DSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIF-CGSG 148 (609)
Q Consensus 70 ~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vif-t~sG 148 (609)
.-|-..++.+|.++.+..+.|+.|.+++.+. ++.....+..+....+..+++++++++++|+++.++|+| | +|
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t-~g 105 (398)
T 2fyf_A 32 EIPTAIKPRDGRFGSGPSKVRLEQLQTLTTT-----AAALFGTSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGN-GG 105 (398)
T ss_dssp CCCGGGSCSSCBCCSSSCCCCHHHHHGGGTT-----TTTTTTSCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEE-TC
T ss_pred CCccccccCCccccCCCCCCCHHHHHHHhhc-----CCCccCcCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeC-Cc
Confidence 3333334556777777777888888877552 111111011233456778999999999999984348888 7 77
Q ss_pred HHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH-HHHHHc--CceEEEEecCCCCCCCHHHHHHHH
Q 038499 149 TTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL-LSWRQS--LAEVVEIGLDDDGLLDIEALRSKL 225 (609)
Q Consensus 149 ttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~-~~~~~~--G~~vv~v~~~~~g~ld~e~L~~al 225 (609)
++++++.++..+ +++| ++++...+|.... ...... |++++.++.+ ++..+.. .+
T Consensus 106 ~t~al~~~~~~l---------------~~~g---v~~v~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~g~~~~~----~i 162 (398)
T 2fyf_A 106 ATAFWDAAAFGL---------------IDKR---SLHLTYGEFSAKFASAVSKNPFVGEPIIITSD-PGSAPEP----QT 162 (398)
T ss_dssp HHHHHHHHHHHT---------------CSSC---EEEEECSHHHHHHHHHHHHCTTSCCCEEEECC-TTCCCCC----CC
T ss_pred hhHHHHHHHHHh---------------cCCC---eEEEeCCHHHHHHHHHHHHhCCCCceEEEecC-CCCCCCc----cc
Confidence 787899888876 3555 2334444553222 134444 8899999987 3432221 13
Q ss_pred hhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC
Q 038499 226 ELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS 305 (609)
Q Consensus 226 ~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g 305 (609)
+ ++|++|++++++||||.+.|+++|.++ +|+++|+|++++.+..++++. ++|++++|+||++|+++|
T Consensus 163 ~-----~~~~~v~~~~~~nptG~~~~~~~i~~~---~~~~vivD~a~~~~~~~~~~~-----~~di~~~s~sK~~~~~gg 229 (398)
T 2fyf_A 163 D-----PSVDVIAWAHNETSTGVAVAVRRPEGS---DDALVVIDATSGAGGLPVDIA-----ETDAYYFAPQKNFASDGG 229 (398)
T ss_dssp C-----TTCSEEEEESEETTTTEECCCCCCTTC---C-CEEEEECTTTTTTSCCCGG-----GCSEEEECTTSTTCSCSS
T ss_pred c-----CCCCEEEEeCcCCCcceecchHHhhhh---cCCeEEEEeccccCCcccCcc-----cCcEEEEecCcccCCCCc
Confidence 3 579999999999999999999998887 899999999999887776653 479999999999998877
Q ss_pred cEEEEEechhhccCCCC---------CCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHh
Q 038499 306 PGILLMTKALYQLGSFP---------PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEY 374 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~---------p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~ 374 (609)
+|++++++++ ++.+. +....++. ...........+|+++.+.. .+++... ..
T Consensus 230 ~g~l~~~~~~--~~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~t~~~~~~~a~~~al~~~--~~ 292 (398)
T 2fyf_A 230 LWLAIMSPAA--LSRIEAIAATGRWVPDFLSLPI-------------AVENSLKNQTYNTPAIATLALLAEQIDWL--VG 292 (398)
T ss_dssp EEEEEECHHH--HHHHHHHHHTTCCCCGGGCHHH-------------HHHHHTTTCCSSCCCHHHHHHHHHHHHHH--HH
T ss_pred eEEEEECHHH--HHHhhcccccCCCCCcEEehHH-------------HhhhcccCCCCCCCCHHHHHHHHHHHHHH--HH
Confidence 9999999887 32221 11111100 00000011334677766543 3344432 33
Q ss_pred cC-HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhh
Q 038499 375 IG-HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDL 452 (609)
Q Consensus 375 ~g-~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~ 452 (609)
.| .+.+.++.+++++++.+.|+++|+++++.+....+.+ ++++.+.. + ++..++.+.|.++
T Consensus 293 ~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~l~~~L~~~ 355 (398)
T 2fyf_A 293 NGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQVVGTIDFVD-D----------------VDAGTVAKILRAN 355 (398)
T ss_dssp HTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCSSEEEEEECT-T----------------SCHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCCcEEEEECCC-C----------------CCHHHHHHHHHHC
Confidence 44 8889999999999999999988899987521112456 66666543 2 4678899999765
Q ss_pred cCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 453 FGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 453 ~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
||.+++|.. . + .++++|||++.++|++|+++++++|++++++
T Consensus 356 -gI~v~~g~~---~-------~-------------------~~~~iRis~~~~~t~e~i~~~~~~l~~~l~~ 397 (398)
T 2fyf_A 356 -GIVDTEPYR---K-------L-------------------GRNQLRVAMFPAVEPDDVSALTECVDWVVER 397 (398)
T ss_dssp -TCBCCSCCT---T-------T-------------------CSSEEEEECCTTSCHHHHHHHHHHHHHHHHT
T ss_pred -CcEEecCcc---c-------C-------------------CCCEEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 999986510 0 0 1479999999999999999999999988754
|
| >2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=257.93 Aligned_cols=344 Identities=13% Similarity=0.111 Sum_probs=235.8
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.|+++...+ +.++.|.+++.+.+.....+++. +...+.......++++.+++++|.+ ++|+++ +|++ ++..+
T Consensus 49 i~~~~~~~~~~~~~p~v~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~la~~~~~~--~~i~~~-sG~~-a~~~~ 122 (401)
T 2bwn_A 49 TVWCGNDYLGMGQHPVVLAAMHEALEAVGAGSGG--TRNISGTTAYHRRLEAEIAGLHQKE--AALVFS-SAYN-ANDAT 122 (401)
T ss_dssp EECSCSCTTSGGGCHHHHHHHHHHHHHHCSCCCS--BTTTBCCBHHHHHHHHHHHHHTTCS--EEEEES-CHHH-HHHHH
T ss_pred EEeeCCCcccCCCCHHHHHHHHHHHHHcCCCCCC--cCcccCChHHHHHHHHHHHHHhCCC--cEEEEC-CcHH-HHHHH
Confidence 4566655433 23457999998887654444442 2222223456788999999999974 378886 8988 34444
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceE
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPIL 236 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~l 236 (609)
+.++. .+.+|| .|+++.++|+++...++..|++++.++.+ |+++|++++++.. .+++++
T Consensus 123 ~~~l~-------------~~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~le~~l~~~~-~~~~~~ 181 (401)
T 2bwn_A 123 LSTLR-------------VLFPGL--IIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADD-PAAPKL 181 (401)
T ss_dssp HHHHH-------------HHSTTC--EEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSC-TTSCEE
T ss_pred HHHHh-------------cCCCCC--EEEECchhhHHHHHHHHHcCCeEEEEcCC-----CHHHHHHHHHhhc-cCCceE
Confidence 33321 035788 79999999999999999999999999975 7899999887421 136899
Q ss_pred EEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc---C-CCCC-CCCccEEEEcCCCCCCCCCCcEEEEE
Q 038499 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID---V-RSGQ-TDGYDAIFLSTHKFLGGPGSPGILLM 311 (609)
Q Consensus 237 v~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id---~-~~~~-~~~~D~v~~S~hK~lggp~g~G~L~~ 311 (609)
+++++++||||.+.|+++|.++|++||+++|+|++++.+..... + .... ....|+++.|++|.+|+++ |+++.
T Consensus 182 v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~~~~G--G~~~~ 259 (401)
T 2bwn_A 182 IAFESVYSMDGDFGPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAA 259 (401)
T ss_dssp EEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEE
T ss_pred EEEecCcCCCCCcCCHHHHHHHHHHcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhccCCC--CEEec
Confidence 99999999999999999999999999999999999985432110 0 0000 0135899999999999655 89988
Q ss_pred echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH-HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM-IRAALAFWVKEYIGHEVIKKQEETYIER 390 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~-~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (609)
++++. +.+... .....+..++++.... +.+++.+. +..|.+.+.++.++++++
T Consensus 260 ~~~~~--~~l~~~----------------------~~~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~ 313 (401)
T 2bwn_A 260 SARMV--DAVRSY----------------------APGFIFSTSLPPAIAAGAQASIAFL--KTAEGQKLRDAQQMHAKV 313 (401)
T ss_dssp CHHHH--HHHHHH----------------------CHHHHTSBCCCHHHHHHHHHHHHHH--TSHHHHHHHHHHHHHHHH
T ss_pred CHHHH--HHHHHh----------------------CcCceecCCCCHHHHHHHHHHHHHH--HhcccHHHHHHHHHHHHH
Confidence 87762 221100 0011223455553322 23444433 334567888999999999
Q ss_pred HHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhh
Q 038499 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470 (609)
Q Consensus 391 ~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ 470 (609)
+.+.|+++ +++++.+ +.+++++.+.. + .+...+.+.|.++.||.++++..+..+.
T Consensus 314 l~~~L~~~-g~~~~~~----~~~~~~~~~~~-~----------------~~~~~~~~~L~~~~gi~v~~~~~~~~~~--- 368 (401)
T 2bwn_A 314 LKMRLKAL-GMPIIDH----GSHIVPVVIGD-P----------------VHTKAVSDMLLSDYGVYVQPINFPTVPR--- 368 (401)
T ss_dssp HHHHHHHH-TCCBCCC----SSSCEEEECCC-H----------------HHHHHHHHHHHHHHCEECCEECTTTSCT---
T ss_pred HHHHHHHC-CCcccCC----CCCeEEEEeCC-h----------------HHHHHHHHHHHhcCCEEEeecCCCCCCC---
Confidence 99999877 7777654 34566666542 1 2456788888655699998765322110
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..+++|++++.++|++|+++++++|+++++.
T Consensus 369 -----------------------~~~~iRis~~~~~t~~~i~~~~~~l~~~~~~ 399 (401)
T 2bwn_A 369 -----------------------GTERLRFTPSPVHDLKQIDGLVHAMDLLWAR 399 (401)
T ss_dssp -----------------------TCCEEEECCCTTSCHHHHHHHHHHHHHHC--
T ss_pred -----------------------CCceEEEEeeCCCCHHHHHHHHHHHHHHHHh
Confidence 1268999999999999999999999987643
|
| >1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=254.10 Aligned_cols=336 Identities=17% Similarity=0.133 Sum_probs=234.6
Q ss_pred EEecCCCCCC----ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 79 TYADHTASGR----SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 79 vyld~~a~g~----~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
.|+|.+++.+ .++.+.+++.+.+.. +++.... +....+......++++.+++++|.+ + +|++ ++|+. ++.
T Consensus 46 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~-~~~~~g~~~~~~~l~~~la~~~g~~-~-~i~~-~sGs~-a~~ 119 (401)
T 1fc4_A 46 HVINFCANNYLGLANHPDLIAAAKAGMDS-HGFGMAS-VRFICGTQDSHKELEQKLAAFLGME-D-AILY-SSCFD-ANG 119 (401)
T ss_dssp EEEECCCSCTTSCTTCHHHHHHHHHHHHH-HCSCCCS-CHHHHCCBHHHHHHHHHHHHHHTCS-E-EEEE-SCHHH-HHH
T ss_pred cEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCC-CCcccCCcHHHHHHHHHHHHHhCCC-c-EEEe-CChHH-HHH
Confidence 4667665543 368899998887653 3333221 1122122466789999999999986 3 5555 58877 565
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC-CC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA-KR 233 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~-~~ 233 (609)
.++.++ +++|| .|+++.+.|++....++..|++++.++. +|+++|++++++.... .+
T Consensus 120 ~~~~~~---------------~~~gd--~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~ 177 (401)
T 1fc4_A 120 GLFETL---------------LGAED--AIISDALNHASIIDGVRLCKAKRYRYAN-----NDMQELEARLKEAREAGAR 177 (401)
T ss_dssp TTHHHH---------------CCTTC--EEEEETTCCHHHHHHHHTSCSEEEEECT-----TCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHH---------------cCCCC--EEEEcchhHHHHHHHHHHcCCceEEECC-----CCHHHHHHHHHHhhccCCC
Confidence 566655 36888 7999999999988888889999999873 4899999998742110 16
Q ss_pred ceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc-c--------ccCCCCCCCCccEEEEcCCCCCCCCC
Q 038499 234 PILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV-E--------IDVRSGQTDGYDAIFLSTHKFLGGPG 304 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~-~--------id~~~~~~~~~D~v~~S~hK~lggp~ 304 (609)
++++++++++||||.+.|+++|.++|++||+++|+|++++.+.. + .++. .+.|+++.|+||+++|+.
T Consensus 178 ~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~----~~~di~~~s~sK~~~~~~ 253 (401)
T 1fc4_A 178 HVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVM----GRVDIITGTLGKALGGAS 253 (401)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCT----TCCSEEEEESSSTTCSSS
T ss_pred ceEEEEeCCcCCCCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCC----cCCcEEEecchhhccCCC
Confidence 89999999999999999999999999999999999999975443 1 2222 257999999999995566
Q ss_pred CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHH
Q 038499 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKK 382 (609)
Q Consensus 305 g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~ 382 (609)
| |++++++++ ++.+..... .... .++++.... +.+++... +. .+.+.+
T Consensus 254 g-G~~~~~~~~--~~~l~~~~~----------------------~~~~-~~~~~~~~~~a~~~~l~~~--~~--~~~~~~ 303 (401)
T 1fc4_A 254 G-GYTAARKEV--VEWLRQRSR----------------------PYLF-SNSLAPAIVAASIKVLEMV--EA--GSELRD 303 (401)
T ss_dssp C-EEEEECHHH--HHHHHHHCH----------------------HHHH-SCCCCHHHHHHHHHHHHHH--HT--CHHHHH
T ss_pred C-EEEEcCHHH--HHHHHHhCc----------------------Ccee-CCCCCHHHHHHHHHHHHHH--hc--CHHHHH
Confidence 6 999999887 222211000 0011 123332222 23333332 21 366778
Q ss_pred HHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcc
Q 038499 383 QEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCA 462 (609)
Q Consensus 383 ~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ 462 (609)
+.+++++++.+.|+++ ++++.. ...+++++.+.. . .+...+.+.|.++ ||.+++|..
T Consensus 304 ~~~~~~~~l~~~L~~~-g~~~~~----~~~~~~~~~~~~-~----------------~~~~~l~~~l~~~-gi~v~~~~~ 360 (401)
T 1fc4_A 304 RLWANARQFREQMSAA-GFTLAG----ADHAIIPVMLGD-A----------------VVAQKFARELQKE-GIYVTGFFY 360 (401)
T ss_dssp HHHHHHHHHHHHHHHT-TCCBCC----SSSSEEEEEEEC-H----------------HHHHHHHHHHHHT-TEECCEECT
T ss_pred HHHHHHHHHHHHHHHc-CCcccC----CCCCEEEEEcCC-h----------------HHHHHHHHHHHHC-CcEEeeecC
Confidence 8889999999999877 676652 244566665532 1 2456788888764 999998876
Q ss_pred cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 463 CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 463 ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
|..+. ..+++||+++.+++++|+++++++|+++++..
T Consensus 361 ~~~~~--------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 397 (401)
T 1fc4_A 361 PVVPK--------------------------GQARIRTQMSAAHTPEQITRAVEAFTRIGKQL 397 (401)
T ss_dssp TSSCT--------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCC--------------------------CCceEEEEeCCCCCHHHHHHHHHHHHHHHHHh
Confidence 54221 14789999999999999999999999998764
|
| >3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.7e-27 Score=253.51 Aligned_cols=341 Identities=16% Similarity=0.130 Sum_probs=239.7
Q ss_pred EEecCCCCCC----ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 79 TYADHTASGR----SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 79 vyld~~a~g~----~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
-|+|.+++.+ .++.+.+++.+.+.. ++++... +....+......++++.+++++|.+ +.|+++ +|+. ++.
T Consensus 44 ~~id~~~~~~~g~~~~~~v~~a~~~~~~~-~~~~~~~-~~~~~g~~~~~~~l~~~la~~~~~~--~~i~~~-sGt~-a~~ 117 (399)
T 3tqx_A 44 EVLNFCANNYLGLADHPALIKTAQTVVEQ-YGFGMAS-VRFICGTQTIHKELEKDISEFLGTD--DTILYS-SCFD-ANG 117 (399)
T ss_dssp EEEECSSCCTTSCTTCHHHHHHHHHHHHH-HCSCCCS-CCCCCCCBHHHHHHHHHHHHHHTCS--EEEEES-CHHH-HHH
T ss_pred eEEEeeccCcccccCCHHHHHHHHHHHHH-hCCCCCC-cCccccCchHHHHHHHHHHHHHCCC--cEEEEC-chHH-HHH
Confidence 4677666543 357888888887764 2332221 1112233466789999999999986 256665 8876 566
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC-CC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA-KR 233 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~-~~ 233 (609)
.++..+ +++|| .|+++.++|+++...++..|++++.++. +|+++|++++++.... .+
T Consensus 118 ~~l~~~---------------~~~gd--~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~~~~~~ 175 (399)
T 3tqx_A 118 GLFETL---------------LGPED--AIISDELNHASIIDGIRLCKAQRYRYKN-----NAMGDLEAKLKEADEKGAR 175 (399)
T ss_dssp TTHHHH---------------CCTTC--EEEEETTCCHHHHHHHHSCCSEEEEECT-----TCTTHHHHHHHHHHTTTCS
T ss_pred HHHHHh---------------cCCCC--EEEECCcccHHHHHHHHHcCCceeEeCC-----CCHHHHHHHHHhhhccCCC
Confidence 666554 37888 7999999999999999999999999986 4778999988753211 17
Q ss_pred ceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCC----CC-CCCccEEEEcCCCCCCCCCCcEE
Q 038499 234 PILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRS----GQ-TDGYDAIFLSTHKFLGGPGSPGI 308 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~----~~-~~~~D~v~~S~hK~lggp~g~G~ 308 (609)
++++++++++||||.+.|+++|.++|++||+++|+|++++.+....+... .. ..+.|+++.|+||+++|+.| |+
T Consensus 176 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~ 254 (399)
T 3tqx_A 176 FKLIATDGVFSMDGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASG-GY 254 (399)
T ss_dssp SEEEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCC-EE
T ss_pred ceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCce-EE
Confidence 89999999999999999999999999999999999999975543222110 00 12579999999999997776 99
Q ss_pred EEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHH
Q 038499 309 LLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEET 386 (609)
Q Consensus 309 L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~ 386 (609)
++.++++ ++.+.... ......++++..+.. .+++... + .+.+.+.++.++
T Consensus 255 ~~~~~~~--~~~~~~~~-----------------------~~~~~~~~~~~~~~~~~~~~l~~~--~-~~~~~~~~~~~~ 306 (399)
T 3tqx_A 255 TSGHKEI--IEWLRNRS-----------------------RPYLFSNTVAPVIVATSLKVLELL--K-TEGPQLRKQLQE 306 (399)
T ss_dssp EEECHHH--HHHHHHHC-----------------------HHHHSSCCCCHHHHHHHHHHHHHH--H-HTHHHHHHHHHH
T ss_pred EEcCHHH--HHHHHHhC-----------------------cceeccCCCcHHHHHHHHHHHHHH--h-hccHHHHHHHHH
Confidence 9999887 22221100 000112344433322 2333321 1 467888899999
Q ss_pred HHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh
Q 038499 387 YIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 387 l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
+++++.+.|+++ ++++..+ ..+++++.+.. . .+...+.+.|.+ .||.+++++.+..+
T Consensus 307 ~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-~----------------~~~~~~~~~l~~-~gi~v~~~~~~~~~ 363 (399)
T 3tqx_A 307 NSRYFRAGMEKL-GFQLVPG----NHPIIPVMLGD-A----------------QLATNMADHLLQ-EGIYVVGFSYPVVP 363 (399)
T ss_dssp HHHHHHHHHHHH-TCCBCCC----SSSEEEEEEEC-H----------------HHHHHHHHHHHH-TTEECCEECTTTSC
T ss_pred HHHHHHHHHHHc-CCCcCCC----CCCEEEEEeCC-H----------------HHHHHHHHHHHH-CCCEEeeeCCCCCC
Confidence 999999999876 6666533 44666665543 1 246788888877 59999976433211
Q ss_pred hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 467 ~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
. .++++||+++++++++|+++++++|++++++.
T Consensus 364 ~--------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~~~ 396 (399)
T 3tqx_A 364 M--------------------------GKARIRVQMSAVHTQQQLDRAIEAFGQVGKKL 396 (399)
T ss_dssp T--------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred C--------------------------CCceEEEEeecCCCHHHHHHHHHHHHHHHHHh
Confidence 1 24799999999999999999999999998764
|
| >3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.8e-27 Score=244.23 Aligned_cols=316 Identities=14% Similarity=0.077 Sum_probs=226.2
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
+++++|+.+.+. +.++.|.+++.+.+..... | . .....++|+.+++++|++++ +|++| +|+++++.
T Consensus 16 ~~~i~l~~n~~~~~~~~~v~~a~~~~~~~~~~------y-~----~~~~~~lr~~la~~~~~~~~-~i~~t-~G~~~~l~ 82 (337)
T 3p1t_A 16 AQAVCLAFNENPEAVEPRVQAAIAAAAARINR------Y-P----FDAEPRVMRKLAEHFSCPED-NLMLV-RGIDECFD 82 (337)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHHGGGTTS------C-C----TTHHHHHHHHHHHHHTSCGG-GEEEE-SHHHHHHH
T ss_pred CCceEeeCCCCCCCCCHHHHHHHHHhhhhhcc------C-C----CCchHHHHHHHHHHhCcCHH-HEEEe-CCHHHHHH
Confidence 468999988654 4567788888876653211 1 1 12367899999999999876 89998 89999999
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
.++.. + +|| .|+++.+.|+++...++..|++++.++.++++.+|+++|+++ .++
T Consensus 83 ~~~~~----------------~-~gd--~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~-------~~~ 136 (337)
T 3p1t_A 83 RISAE----------------F-SSM--RFVTAWPGFDGYRARIAVSGLRHFEIGLTDDLLLDPNDLAQV-------SRD 136 (337)
T ss_dssp HHHHH----------------S-TTS--EEEEESSSCSHHHHHHTTSCCEEEEECBCTTSSBCHHHHTTC-------CTT
T ss_pred HHHHh----------------c-CCC--eEEEeCCCcHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHhh-------cCC
Confidence 88765 3 677 699999999999988999999999999988888999998764 357
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccC--CcccccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEE
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG--PYVEIDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLM 311 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~--~~~~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~ 311 (609)
+++++++++||||.+.|+++|.++|+++++ +++|++++. +....... ..+.++++.|+||++|.| .++|++++
T Consensus 137 ~~v~i~~p~nptG~~~~~~~l~~l~~~~~~-~ivDea~~~~~~~~~~~~~---~~~~~i~~~S~sK~~g~~G~r~G~~~~ 212 (337)
T 3p1t_A 137 DCVVLANPSNPTGQALSAGELDQLRQRAGK-LLIDETYVDYSSFRARGLA---YGENELVFRSFSKSYGLAGLRLGALFG 212 (337)
T ss_dssp EEEEEESSCTTTCCCCCHHHHHHHHHHCSE-EEEECTTGGGSSCSSSCCC---CBTTEEEEEESSSTTCCTTTCCEEEEC
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHhCCc-EEEECCChhhccccccccc---cCCCEEEEeeCchhccCcchheEEEEe
Confidence 999999999999999999999999999997 566999763 11111111 125689999999999733 45799999
Q ss_pred echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
++++. +.+... ....+++......+ .++ +.+....+...++..+.++++
T Consensus 213 ~~~~~--~~l~~~---------------------------~~~~~~~~~~~~a~-~~~-l~~~~~~~~~~~~~~~~~~~l 261 (337)
T 3p1t_A 213 PSELI--AAMKRK---------------------------QWFCNVGTLDLHAL-EAA-LDNDRAREAHIAKTLAQRRRV 261 (337)
T ss_dssp CHHHH--HHHHTT---------------------------SCTTCSCHHHHHHH-HHH-HTCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHH--HHHHhh---------------------------cCCCCCCHHHHHHH-HHH-hCCHHHHHHHHHHHHHHHHHH
Confidence 88872 222111 01122333322211 111 212122445556667778888
Q ss_pred HHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh
Q 038499 392 LERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL 471 (609)
Q Consensus 392 ~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l 471 (609)
.+.|+++ ++++..+ ..+++++.... ...+.+.|.+ .||.+++|..|.
T Consensus 262 ~~~L~~~-g~~~~~~----~~~~~~~~~~~--------------------~~~~~~~l~~-~gi~v~~g~~~~------- 308 (337)
T 3p1t_A 262 ADALRGL-GYRVASS----EANFVLVENAA--------------------GERTLRFLRE-RGIQVKDAGQFG------- 308 (337)
T ss_dssp HHHHHHT-TCCBCCC----SSSEEEEECTT--------------------THHHHHHHHH-TTEECEEGGGGT-------
T ss_pred HHHHHHC-cCEECCC----CCeEEEEEcCC--------------------HHHHHHHHHH-CCeEEEECccCC-------
Confidence 8888877 7766543 33455544332 3567777754 699999887664
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++++|||++ +++|+++++++|+++.+
T Consensus 309 ----------------------~~~~iRis~~---~~~~~~~l~~al~~~~~ 335 (337)
T 3p1t_A 309 ----------------------LHHHIRISIG---REEDNDRLLAALAEYSD 335 (337)
T ss_dssp ----------------------CCSEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred ----------------------CCCeEEEecC---CHHHHHHHHHHHHHHhh
Confidence 1489999997 89999999999998764
|
| >1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-27 Score=250.27 Aligned_cols=341 Identities=13% Similarity=0.053 Sum_probs=234.2
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal 153 (609)
.+++++.+... +.++.+.+++.+.+.... . .|....+..++++.+.+++.+.+|. +++ +|++| +|+++++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~-~v~~~-~g~~~a~ 103 (388)
T 1j32_A 31 DVCSFSAGEPDFNTPKHIVEAAKAALEQGK----T-RYGPAAGEPRLREAIAQKLQRDNGLCYGAD-NILVT-NGGKQSI 103 (388)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHHHHHH
T ss_pred CEEECCCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHhcCCCCChh-hEEEc-CCHHHHH
Confidence 35566555433 346778888877764310 0 1111112345555666666666675 444 89998 7888899
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~ 231 (609)
..++..+ +++|| .|+++.++|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 104 ~~~~~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----- 161 (388)
T 1j32_A 104 FNLMLAM---------------IEPGD--EVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT----- 161 (388)
T ss_dssp HHHHHHH---------------CCTTC--EEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC-----
T ss_pred HHHHHHh---------------cCCCC--EEEEcCCCChhHHHHHHHcCCEEEEecCCcccCCCCCHHHHHHhcC-----
Confidence 9988876 36888 699999999999988999999999999875 56789999999997
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCccc----ccCCCCCC--CCccEEEEcCCCCCCC
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE----IDVRSGQT--DGYDAIFLSTHKFLGG 302 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~----id~~~~~~--~~~D~v~~S~hK~lgg 302 (609)
++++++++++++||||.+.| +++|+++|++||+++|+|++++..... ..+..+.. .+.|+++.|+||++|.
T Consensus 162 ~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~ 241 (388)
T 1j32_A 162 PKTKLLVFNTPSNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAM 241 (388)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTC
T ss_pred cCceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhccCC
Confidence 57899999999999999966 889999999999999999998754221 12222110 2468999999999973
Q ss_pred CC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHH
Q 038499 303 PG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIK 381 (609)
Q Consensus 303 p~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~ 381 (609)
|+ .+|++++++++ ++.+.+.. .....+++.+.+. ++.+.+.......+.+.
T Consensus 242 ~G~r~G~~~~~~~~--~~~l~~~~------------------------~~~~~~~~~~~~~--a~~~~l~~~~~~~~~~~ 293 (388)
T 1j32_A 242 TGWRVGFLAGPVPL--VKAATKIQ------------------------GHSTSNVCTFAQY--GAIAAYENSQDCVQEML 293 (388)
T ss_dssp TTTCCEEEECCHHH--HHHHHHHH------------------------HTTTCSCCHHHHH--HHHHHHHSCSHHHHHHH
T ss_pred cccceEEEEeCHHH--HHHHHHHH------------------------hhcccCCCHHHHH--HHHHHHhCCcHHHHHHH
Confidence 32 38999999887 22221110 0011223333332 22222210112356777
Q ss_pred HHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCc
Q 038499 382 KQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGC 461 (609)
Q Consensus 382 ~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~ 461 (609)
++.+++++++.+.|+++|++++..+ ..+++.+...+ .. ..+...+.+.|.+++||.+++|.
T Consensus 294 ~~~~~~~~~l~~~L~~~~g~~~~~~----~~~~~~~~~~~-~~--------------~~~~~~~~~~l~~~~gi~v~~g~ 354 (388)
T 1j32_A 294 AAFAERRRYMLDALNAMPGLECPKP----DGAFYMFPSIA-KT--------------GRSSLDFCSELLDQHQVATVPGA 354 (388)
T ss_dssp HHHHHHHHHHHHHHHTCTTCBCCCC----CBTTEECCBCG-GG--------------TCCHHHHHHHHHHHHCEECEEGG
T ss_pred HHHHHHHHHHHHHHhhCCCCcccCC----CeeEEEEEecC-CC--------------CCCHHHHHHHHHHhCCEEEeChh
Confidence 8888899999999998888887654 23444433222 10 13567888888765799999886
Q ss_pred ccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 462 ACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 462 ~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.|.. ++++||+++ +++++++.++++|+++++.
T Consensus 355 ~~~~-----------------------------~~~iRis~~--~~~~~i~~~~~~l~~~l~~ 386 (388)
T 1j32_A 355 AFGA-----------------------------DDCIRLSYA--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp GGTC-----------------------------TTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred hhCC-----------------------------CCcEEEEec--CCHHHHHHHHHHHHHHHHH
Confidence 5541 378999997 6999999999999988764
|
| >2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-26 Score=249.21 Aligned_cols=336 Identities=13% Similarity=0.061 Sum_probs=237.8
Q ss_pred EecCCCCC----CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 80 YADHTASG----RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 80 yld~~a~g----~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
|+|.+++. ..++.+.+++.+.+..+ +. +...+....+......++++.+++++|.+ +.+++ ++|+++ +..
T Consensus 66 ~id~~~~~~lg~~~~~~v~~a~~~~~~~~-~~-~~~~~~~~~G~~~~~~~l~~~la~~~g~~--~~i~~-~sGs~a-~~~ 139 (427)
T 2w8t_A 66 TILLGTYNYMGMTFDPDVIAAGKEALEKF-GS-GTCGSRMLNGTFHDHMEVEQALRDFYGTT--GAIVF-STGYMA-NLG 139 (427)
T ss_dssp EEECSCCCTTCGGGCHHHHHHHHHHHHHH-CS-CCCSCTTTTCCCHHHHHHHHHHHHHHTCS--EEEEE-SCHHHH-HHH
T ss_pred EEEEECcccccCCCCHHHHHHHHHHHHHh-CC-CCcccccccCCcHHHHHHHHHHHHHhCCC--ceEEe-cCcHHH-HHH
Confidence 55655543 35678889888877542 21 11111122223466788999999999975 24555 588885 444
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++.++ +++|| .|+++...|.++...++..|++++.++. +|+++|++++++... .+++
T Consensus 140 al~~l---------------~~~gd--~vl~~~~~h~~~~~~~~~~g~~~~~~~~-----~d~~~le~~l~~~~~-~~~~ 196 (427)
T 2w8t_A 140 IISTL---------------AGKGE--YVILDADSHASIYDGCQQGNAEIVRFRH-----NSVEDLDKRLGRLPK-EPAK 196 (427)
T ss_dssp HHHHH---------------SCTTC--EEEEETTCCHHHHHHHHHSCSEEEEECT-----TCHHHHHHHHHTSCS-SSCE
T ss_pred HHHHh---------------cCCCC--EEEECCcccHHHHHHHHHcCCeeEEeCC-----CCHHHHHHHHHhccC-CCCe
Confidence 55554 36888 7999999999999999999999998874 599999999984211 1789
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc---------ccCCCCCCCCccEEEEcCCCCCCCCCCc
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE---------IDVRSGQTDGYDAIFLSTHKFLGGPGSP 306 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~---------id~~~~~~~~~D~v~~S~hK~lggp~g~ 306 (609)
+|++++++|+||.+.|+++|.++|++||+++|+|++++.+... .++. .++|+++.|+||++| +.|
T Consensus 197 ~v~~~~~~n~tG~~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~----~~~di~~~s~sK~~g-~~g- 270 (427)
T 2w8t_A 197 LVVLEGVYSMLGDIAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLE----GQIDFVVGTFSKSVG-TVG- 270 (427)
T ss_dssp EEEEESEETTTTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCT----TCCSEEEEESSSTTC-SCC-
T ss_pred EEEEcCCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCC----cCCcEEEecchhhhc-cCC-
Confidence 9999999999999999999999999999999999999876543 2332 267999999999998 555
Q ss_pred EEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHH
Q 038499 307 GILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQE 384 (609)
Q Consensus 307 G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~ 384 (609)
|++++++++ ++.+.+.. . ...+ .++.+..+.. .+++... + ..+.+.++.
T Consensus 271 G~v~~~~~l--~~~l~~~~----------------~------~~~~-~~~~~~~~~aa~~~al~~~--~--~~~~~~~~~ 321 (427)
T 2w8t_A 271 GFVVSNHPK--FEAVRLAC----------------R------PYIF-TASLPPSVVATATTSIRKL--M--TAHEKRERL 321 (427)
T ss_dssp EEEEECCTT--GGGGGGTC----------------H------HHHS-SCCCCHHHHHHHHHHHHHH--T--SCHHHHHHH
T ss_pred CEEEeCHHH--HHHHHHhc----------------c------cccc-cCCCCHHHHHHHHHHHHHH--h--cCHHHHHHH
Confidence 999999887 33332110 0 0001 2233333332 2333332 1 246778888
Q ss_pred HHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 385 ETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 385 ~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
+++++++.+.|+++ ++.+..+. ...+++++.+.. . .....+.+.|.++ ||.+++|..|.
T Consensus 322 ~~~~~~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~-~----------------~~~~~l~~~L~~~-Gi~v~~~~~~~ 380 (427)
T 2w8t_A 322 WSNARALHGGLKAM-GFRLGTET--CDSAIVAVMLED-Q----------------EQAAMMWQALLDG-GLYVNMARPPA 380 (427)
T ss_dssp HHHHHHHHHHHHHH-TCEESCSS--CCSSEEEEEESS-H----------------HHHHHHHHHHHHT-TEECEEECTTT
T ss_pred HHHHHHHHHHHHHc-CCcccCCC--CCCCEEEEEECC-H----------------HHHHHHHHHHHHC-CeEEeeeCCCC
Confidence 99999999999877 78877432 245666666543 1 2356788888775 99999876554
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
.|. ..+++||+++.++|++|+++++++|+++++...
T Consensus 381 ~~~--------------------------~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~~~~ 416 (427)
T 2w8t_A 381 TPA--------------------------GTFLLRCSICAEHTPAQIQTVLGMFQAAGRAVG 416 (427)
T ss_dssp SCT--------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCC--------------------------CCeEEEEEeCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 221 147999999999999999999999999987643
|
| >1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=247.87 Aligned_cols=346 Identities=14% Similarity=0.004 Sum_probs=235.8
Q ss_pred CceEEecCCC-----CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC------------CCC
Q 038499 76 RRLTYADHTA-----SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG------------GGQ 138 (609)
Q Consensus 76 ~~~vyld~~a-----~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g------------~~~ 138 (609)
+++++|+.+. ..+.++.+.+++.+.+.... .+ .|.. .....++|+.++++++ .++
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~--~~--~y~~----~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~ 104 (416)
T 1bw0_A 33 KPIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQE--CN--GYFP----TVGSPEAREAVATWWRNSFVHKEELKSTIVK 104 (416)
T ss_dssp SCCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTC--SS--SCCC----TTCCHHHHHHHHHHHHHHHCCSTTTGGGCCG
T ss_pred CCeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCc--cC--CcCC----CCCCHHHHHHHHHHHHhhhcccccCCCCCCc
Confidence 3577887765 35677889999888775310 01 0111 1124567777777777 555
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCC
Q 038499 139 EDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLL 216 (609)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~l 216 (609)
+ +|++| +|+++++..++.++ +++|| .|++..++|+++...++..|++++.++.+++ +.+
T Consensus 105 ~-~v~~~-~g~~~al~~~~~~l---------------~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~ 165 (416)
T 1bw0_A 105 D-NVVLC-SGGSHGILMAITAI---------------CDAGD--YALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEA 165 (416)
T ss_dssp G-GEEEE-SHHHHHHHHHHHHH---------------CCTTC--EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEE
T ss_pred c-eEEEe-CChHHHHHHHHHHh---------------CCCCC--EEEEcCCCcHhHHHHHHHcCcEEEEeecCcccCCCC
Confidence 5 89998 78888999888876 36888 6999999999998888899999999998653 568
Q ss_pred CHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc--------ccccCCCCC
Q 038499 217 DIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY--------VEIDVRSGQ 285 (609)
Q Consensus 217 d~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~--------~~id~~~~~ 285 (609)
|+++|+++++ ++++++++++++||||.+.| +++|+++|++||+++|+|++++... ...++..+.
T Consensus 166 d~~~l~~~l~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~ 240 (416)
T 1bw0_A 166 DLDEIRRLKD-----DKTKLLIVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFE 240 (416)
T ss_dssp CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSC
T ss_pred CHHHHHHHhc-----cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHcc
Confidence 9999999997 57899999999999999999 8899999999999999999987521 112232221
Q ss_pred CCCccEEEEcCCCCCCCCC-CcEEEEEech--hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH
Q 038499 286 TDGYDAIFLSTHKFLGGPG-SPGILLMTKA--LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362 (609)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~-g~G~L~~~~~--~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~ 362 (609)
..+.++++.|+||++++|+ .+|+++++++ + ++.+... .. .......+++....
T Consensus 241 ~~~~~i~~~s~sK~~~~~Glr~G~~~~~~~~~~--~~~~~~~--------------------~~--~~~~~~~~~~~~~~ 296 (416)
T 1bw0_A 241 TTVPRVILGGTAKNLVVPGWRLGWLLYVDPHGN--GPSFLEG--------------------LK--RVGMLVCGPCTVVQ 296 (416)
T ss_dssp CSCCEEEEEESTTTTSCGGGCCEEEEEECTTCS--CHHHHHH--------------------HH--HHHHHHTCSCHHHH
T ss_pred CCCcEEEEecchhhCCCCCceEEEEEeeCchhh--HHHHHHH--------------------HH--HHhccccCCCcHHH
Confidence 1223577889999987653 4899999875 3 1111000 00 00001122333222
Q ss_pred HHHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCC
Q 038499 363 IRAALAFWVKE--YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPL 440 (609)
Q Consensus 363 ~~aal~~~~~~--~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l 440 (609)
..+. +. +.. ..+.+.+.++.+++++++.+.|+++|++.+..+. ...++++.+.. .. -....
T Consensus 297 ~a~~-~~-l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~---~~~~~~~~~~~-~~-----------~~~~~ 359 (416)
T 1bw0_A 297 AALG-EA-LLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPR---GAMYLMSRIDL-EK-----------YRDIK 359 (416)
T ss_dssp HHHH-HH-HHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCC---BTTEEEEEECG-GG-----------BSSCC
T ss_pred HHHH-HH-HhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCC---eeEEEEEeCCH-HH-----------cCCCC
Confidence 2111 11 211 2345677888889999999999998899887542 23344444432 10 00012
Q ss_pred ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 441 HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 441 ~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
+...+.+.|.+++||.+++|..|. .++++||+++ +++++++.+++.|.+
T Consensus 360 ~~~~~~~~l~~~~gi~v~~g~~f~-----------------------------~~~~iRis~~--~~~e~l~~~l~~l~~ 408 (416)
T 1bw0_A 360 TDVEFFEKLLEEENVQVLPGTIFH-----------------------------APGFTRLTTT--RPVEVYREAVERIKA 408 (416)
T ss_dssp SHHHHHHHHHHHHCEECEEGGGGT-----------------------------CTTEEEEECC--SCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCEEEecccccC-----------------------------CCCeEEEEec--CCHHHHHHHHHHHHH
Confidence 467787877555799999887654 1479999996 689999999999999
Q ss_pred HHHhc
Q 038499 521 IAIYG 525 (609)
Q Consensus 521 v~~~~ 525 (609)
+++..
T Consensus 409 ~l~~~ 413 (416)
T 1bw0_A 409 FCQRH 413 (416)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88654
|
| >3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=243.72 Aligned_cols=324 Identities=14% Similarity=0.050 Sum_probs=230.3
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
+++.++.+... +.++.+.+++.+.+......++. ...++++.+++++|++++ +|++| +|+++++..
T Consensus 27 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~-----------~~~~l~~~la~~~~~~~~-~i~~~-~g~t~al~~ 93 (361)
T 3ftb_A 27 ELLDYSSNINPLGIPKSFLNNIDEGIKNLGVYPDV-----------NYRRLNKSIENYLKLKDI-GIVLG-NGASEIIEL 93 (361)
T ss_dssp -CEETTCCCCTTCSCHHHHTTHHHHHHGGGSCCCT-----------TCHHHHHHHHHHHTCCSC-EEEEE-SSHHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHHHhcCCCCc-----------cHHHHHHHHHHHhCCCcc-eEEEc-CCHHHHHHH
Confidence 56666655332 35678888888777643332221 146789999999998876 89998 778888887
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++.. + | .|++..+.|+++...++..|++++.++.++++.+++++|+++++ + ++
T Consensus 94 ~~~~----------------~---d--~vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~-----~-~~ 146 (361)
T 3ftb_A 94 SISL----------------F---E--KILIIVPSYAEYEINAKKHGVSVVFSYLDENMCIDYEDIISKID-----D-VD 146 (361)
T ss_dssp HHTT----------------C---S--EEEEEESCCTHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHTT-----T-CS
T ss_pred HHHH----------------c---C--cEEEecCChHHHHHHHHHcCCeEEEeecCcccCCCHHHHHHhcc-----C-CC
Confidence 7653 2 4 68899999999999999999999999999887899999999998 5 88
Q ss_pred EEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCccc--ccCCCC-CCCCccEEEEcCCCCCCCC-CCcEE
Q 038499 236 LGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE--IDVRSG-QTDGYDAIFLSTHKFLGGP-GSPGI 308 (609)
Q Consensus 236 lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~--id~~~~-~~~~~D~v~~S~hK~lggp-~g~G~ 308 (609)
++++++++||||.+.| +++|+++|++||+++|+|++++..... ...... ...+.++++.|+||++|.| .++|+
T Consensus 147 ~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~g~ 226 (361)
T 3ftb_A 147 SVIIGNPNNPNGGLINKEKFIHVLKLAEEKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGIRFGY 226 (361)
T ss_dssp EEEEETTBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGGCCEE
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCcceeE
Confidence 9999999999999987 556788888999999999998743321 111111 1123457788999999743 35799
Q ss_pred EE-EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 038499 309 LL-MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETY 387 (609)
Q Consensus 309 L~-~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (609)
++ .++++. +.+... ....+++......+... +.+..+.+.+.++.+++
T Consensus 227 ~~~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~~~~~ 275 (361)
T 3ftb_A 227 GITNNKEIA--AKIKAK---------------------------QNPWNINCFAEMAAINC--LKDTNYIEESLLWIKKE 275 (361)
T ss_dssp EEESCHHHH--HHHHTT---------------------------SCTTCSCHHHHHHHHHT--SSCHHHHHHHHHHHHHH
T ss_pred EEeCCHHHH--HHHHhh---------------------------CCCCCCCHHHHHHHHHH--hcCHHHHHHHHHHHHHH
Confidence 88 566662 222111 00123333332222111 11223456778888889
Q ss_pred HHHHHHHhCCCCceE-EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh
Q 038499 388 IERALERLLPNQNIK-ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP 466 (609)
Q Consensus 388 ~~~~~~~L~~~p~i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p 466 (609)
++++.+.|+++|++. +..+ ..+++++.+.. .+...+.+.|.++ ||.+++|..|.+.
T Consensus 276 ~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~------------------~~~~~l~~~l~~~-gi~v~~g~~~~~~ 332 (361)
T 3ftb_A 276 RKRFIEELNKIGFIKRVFSP----HANFVLCRLEN------------------ISGEKLYDSLLKE-DIVIRRCCNFIGL 332 (361)
T ss_dssp HHHHHHHHHHSSSEEEEECC----SSSEEEEEESS------------------SCHHHHHHHHHTT-TEECEECTTSTTC
T ss_pred HHHHHHHHHhCCCCceecCC----CCeEEEEEcCC------------------CCHHHHHHHHHHC-CeEEeeCccCCCC
Confidence 999999999899998 7654 33555554433 3577899999775 9999998877521
Q ss_pred hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 467 YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 467 ~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++|++++ +.+|+++++++|+.+.+.
T Consensus 333 ---------------------------~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 360 (361)
T 3ftb_A 333 ---------------------------DDSFVRFAIK---DEKKNTKFLRALKGVENN 360 (361)
T ss_dssp ---------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHHT
T ss_pred ---------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHhc
Confidence 2589999997 899999999999988753
|
| >3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-27 Score=248.35 Aligned_cols=328 Identities=15% Similarity=0.123 Sum_probs=232.4
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
.++.+.+++.+.+... .+... .+....+....++++++++++++|.+ ++++| +|+++++..++.++
T Consensus 58 ~~~~v~~a~~~~~~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~---~v~~~-~ggt~a~~~~~~~~-------- 123 (398)
T 3a2b_A 58 TDTRIIKAAQDALEKY-GTGCA-GSRFLNGTLDIHVELEEKLSAYVGKE---AAILF-STGFQSNLGPLSCL-------- 123 (398)
T ss_dssp GCHHHHHHHHHHHHHH-CSCCC-SBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEE-SSHHHHHHHHHHHS--------
T ss_pred CCHHHHHHHHHHHHHc-CCCCC-CcCcccCCcHHHHHHHHHHHHHhCCC---cEEEE-CCHHHHHHHHHHHH--------
Confidence 5678888888777532 11111 11112223467889999999999973 78998 45556888887776
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcccc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGI 248 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~ 248 (609)
+++|| .|+++.+.|+++...++..|++++.++. +|+++|++++++... ++++++++++++||||.
T Consensus 124 -------~~~gd--~V~~~~p~~~~~~~~~~~~g~~~~~v~~-----~d~~~l~~~l~~~~~-~~~~~v~~~~~~nptG~ 188 (398)
T 3a2b_A 124 -------MGRND--YILLDERDHASIIDGSRLSFSKVIKYGH-----NNMEDLRAKLSRLPE-DSAKLICTDGIFSMEGD 188 (398)
T ss_dssp -------SCTTC--EEEEETTCCHHHHHHHHHSSSEEEEECT-----TCHHHHHHHHHTSCS-SSCEEEEEESBCTTTCC
T ss_pred -------hCCCC--EEEECCccCHHHHHHHHHcCCceEEeCC-----CCHHHHHHHHHhhcc-CCceEEEEeCCCCCCCC
Confidence 37888 7999999999999999999999999986 589999999984210 17899999999999999
Q ss_pred ccCHHHHHHHHHHhCCeEEEeccccCCcc---cccCCC-CC-CCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCC
Q 038499 249 YSDTRSIARLLHQYGGFACFDFAASGPYV---EIDVRS-GQ-TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPP 323 (609)
Q Consensus 249 ~~dl~~I~~la~~~g~~vivD~A~~~~~~---~id~~~-~~-~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p 323 (609)
+.|+++|.++|++||+++|+|++++.+.. ..++.. .. .+++|+++.|+||++| |.| |++++++++ ++.+..
T Consensus 189 ~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~-~~G-G~~~~~~~~--~~~l~~ 264 (398)
T 3a2b_A 189 IVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSLA-SLG-GFVAGDADV--IDFLKH 264 (398)
T ss_dssp BCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTTC-SSC-EEEEECHHH--HHHHHH
T ss_pred ccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEeccccccc-CCC-cEEEeCHHH--HHHHHH
Confidence 99999999999999999999999976532 121111 00 1136999999999998 666 999999887 222211
Q ss_pred CccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce
Q 038499 324 STCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI 401 (609)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i 401 (609)
.. ......++++..+.. .+++... + ..+.+.++.+++++++.+.|+++ ++
T Consensus 265 ~~-----------------------~~~~~~~~~~~~~~a~~~~~l~~~--~--~~~~~~~~~~~~~~~l~~~L~~~-g~ 316 (398)
T 3a2b_A 265 NA-----------------------RSVMFSASMTPASVASTLKALEII--Q--NEPEHIEKLWKNTDYAKAQLLDH-GF 316 (398)
T ss_dssp HC-----------------------HHHHSSBCCCHHHHHHHHHHHHHH--H--HCTHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred hc-----------------------ccceecCCCCHHHHHHHHHHHHHH--h--hCHHHHHHHHHHHHHHHHHHHhc-CC
Confidence 00 000112333444432 2333332 1 13466778888899999999877 77
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHH
Q 038499 402 KILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQ 481 (609)
Q Consensus 402 ~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~ 481 (609)
++..+ ...++++.+.. + .+...+.+.|.++ ||.+++|..|..+.
T Consensus 317 ~~~~~----~g~~~~~~~~~-~----------------~~~~~l~~~l~~~-gi~v~~~~~~~~~~-------------- 360 (398)
T 3a2b_A 317 DLGAT----ESPILPIFIRS-N----------------EKTFWVTKMLQDD-GVFVNPVVSPAVPA-------------- 360 (398)
T ss_dssp CBCSC----CSSEEEEECCC-H----------------HHHHHHHHHHHHT-TEECEEECTTTSCG--------------
T ss_pred CcCCC----CCCEEEEEcCC-H----------------HHHHHHHHHHHHC-CcEEEeeCCCCCCC--------------
Confidence 76543 23455554432 1 2466788888776 99999887765331
Q ss_pred HHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 482 IRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 482 ~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++||+++.+++++|+++++++|+++++..
T Consensus 361 ------------~~~~iRis~~~~~~~e~i~~~~~~l~~~l~~~ 392 (398)
T 3a2b_A 361 ------------EESLIRFSLMATHTYDQIDEAIEKMVKVFKQA 392 (398)
T ss_dssp ------------GGCEEEEECCTTCCHHHHHHHHHHHHHHHHHC
T ss_pred ------------CCceEEEEEeCCCCHHHHHHHHHHHHHHHHHh
Confidence 14899999999999999999999999988653
|
| >1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=250.01 Aligned_cols=333 Identities=13% Similarity=0.039 Sum_probs=231.7
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal 153 (609)
.+++++.+... +.++.+.+++.+.+.... . .|.......++++.+.+++.+.+|. +++ +|++| +|+++++
T Consensus 42 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~lr~~la~~~~~~~g~~~~~~-~v~~~-~g~t~al 114 (389)
T 1o4s_A 42 DVINLTAGEPDFPTPEPVVEEAVRFLQKGE----V-KYTDPRGIYELREGIAKRIGERYKKDISPD-QVVVT-NGAKQAL 114 (389)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHTTCC----C-CCCCTTCCHHHHHHHHHHHHHHHTCCCCGG-GEEEE-SHHHHHH
T ss_pred CEEEccCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHHhCCCCCHH-HEEEe-cCHHHHH
Confidence 46777766554 346788888888775321 1 1111112233444444444444476 444 89998 7888899
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~ 231 (609)
..++.++ +++|| .|+++.+.|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 115 ~~~~~~l---------------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----- 172 (389)
T 1o4s_A 115 FNAFMAL---------------LDPGD--EVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV----- 172 (389)
T ss_dssp HHHHHHH---------------CCTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC-----
T ss_pred HHHHHHh---------------CCCCC--EEEEcCCCchhHHHHHHHcCCEEEEEecCCccCCCCCHHHHHHhcc-----
Confidence 9888876 36888 699999999999988999999999999875 45789999999997
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCccc---ccCCCCC-CCCccEEEEcCCCCCCCCC
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE---IDVRSGQ-TDGYDAIFLSTHKFLGGPG 304 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~---id~~~~~-~~~~D~v~~S~hK~lggp~ 304 (609)
++++++++++++||||.+.| +++|+++|++||+++|+|++++.+... .++..+. ..+.|+++.|+||++|.|+
T Consensus 173 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 252 (389)
T 1o4s_A 173 GKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTG 252 (389)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGG
T ss_pred cCceEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCHhhcCCCCCcEEEEeechhhcCCcc
Confidence 57899999999999999988 889999999999999999998865431 1221111 1367999999999997332
Q ss_pred -CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHH
Q 038499 305 -SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQ 383 (609)
Q Consensus 305 -g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~ 383 (609)
.+|++++++++ ++.+.+. ......+++.+.+. ++.+.+ + .+.+.+.++
T Consensus 253 ~r~G~l~~~~~~--~~~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l--~-~~~~~~~~~ 301 (389)
T 1o4s_A 253 WRVGYLISSEKV--ATAVSKI------------------------QSHTTSCINTVAQY--AALKAL--E-VDNSYMVQT 301 (389)
T ss_dssp GCCEEEECCHHH--HHHHHHH------------------------HHHHTCSCCHHHHH--HHHHHT--T-CCCHHHHHH
T ss_pred cceEEEEeCHHH--HHHHHHH------------------------hhhcccCCCHHHHH--HHHHHH--h-ccHHHHHHH
Confidence 38999998887 2222111 00111233333332 222222 2 246778888
Q ss_pred HHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCccc
Q 038499 384 EETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
.+++++++.+.|+++ ++++..+ ..+++.+...+ .+..++.+.|.++.||.+++|..|
T Consensus 302 ~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~------------------~~~~~l~~~l~~~~gi~v~~g~~f 358 (389)
T 1o4s_A 302 FKERKNFVVERLKKM-GVKFVEP----EGAFYLFFKVR------------------GDDVKFCERLLEEKKVALVPGSAF 358 (389)
T ss_dssp HHHHHHHHHHHHHHT-TCCCCCC----SBSSEEEEECS------------------SCHHHHHHHHHHHHCEECEEGGGG
T ss_pred HHHHHHHHHHHHHhc-CCeeecC----CcceEEEEeCC------------------CCHHHHHHHHHHHCCEEEeCchhc
Confidence 889999999999877 7766543 33555444332 246788888864579999987655
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.. ++++||+++ +++++++.++++|+++++
T Consensus 359 ~~-----------------------------~~~~Ris~~--~~~~~l~~~l~~l~~~l~ 387 (389)
T 1o4s_A 359 LK-----------------------------PGFVRLSFA--TSIERLTEALDRIEDFLN 387 (389)
T ss_dssp TC-----------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred CC-----------------------------CCeEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 41 379999998 499999999999988764
|
| >2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-26 Score=241.60 Aligned_cols=351 Identities=12% Similarity=-0.032 Sum_probs=232.2
Q ss_pred CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccch
Q 038499 86 SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 86 ~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
.++.++.+.+++.+.+...+.++ + ....++++.+++++|.+ +++++ +|+++++..++.+++..
T Consensus 8 ~~~~~~~v~~a~~~~~~~~~~~~-------~----~~~~~l~~~la~~~~~~---~v~~~-~ggt~al~~~~~~~~~~-- 70 (375)
T 2fnu_A 8 EPCLDKEDKKAVLEVLNSKQLTQ-------G----KRSLLFEEALCEFLGVK---HALVF-NSATSALLTLYRNFSEF-- 70 (375)
T ss_dssp CCCCCHHHHHHHHHHHTSSCCSS-------S----HHHHHHHHHHHHHHTCS---EEEEE-SCHHHHHHHHHHHSSCC--
T ss_pred CCCCCHHHHHHHHHHHHcCcccC-------C----hHHHHHHHHHHHHhCCC---eEEEe-CCHHHHHHHHHHHhccc--
Confidence 35778889999988875432222 1 24678999999999986 68898 56666888888776200
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCc
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNV 245 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~ 245 (609)
+++|| .|+++.++|+++...++..|++++.+++++++.+|+++|+++++ +++++++++++
T Consensus 71 ----------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~~~--- 130 (375)
T 2fnu_A 71 ----------SADRN--EIITTPISFVATANMLLESGYTPVFAGIKNDGNIDELALEKLIN-----ERTKAIVSVDY--- 130 (375)
T ss_dssp ----------CTTSC--EEEECSSSCTHHHHHHHHTTCEEEECCBCTTSSBCGGGSGGGCC-----TTEEEEEEECG---
T ss_pred ----------CCCCC--EEEECCCccHhHHHHHHHCCCEEEEeccCCCCCCCHHHHHhhcC-----cCceEEEEeCC---
Confidence 25788 79999999999999999999999999998877899999999887 57888877766
Q ss_pred cccccCHHHHHHHHHHhCCeEEEeccccCCccccc--CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe--chhhccCCC
Q 038499 246 TGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID--VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT--KALYQLGSF 321 (609)
Q Consensus 246 TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id--~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~--~~~~~l~~~ 321 (609)
||.+.|+++|.++|++||+++|+|++++.+..+.. +... ..+++.++|+||++| | |.|+++++ +++ .+.+
T Consensus 131 tG~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~~~~~~~~~--~~i~~~s~s~~K~~~-~-g~g~~~~~~~~~~--~~~~ 204 (375)
T 2fnu_A 131 AGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNKKVGGF--ALASVFSFHAIKPIT-T-AEGGAVVTNDSEL--HEKM 204 (375)
T ss_dssp GGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTEETTSS--SSEEEEECCTTSSSC-C-SSCEEEEESCHHH--HHHH
T ss_pred cCCccCHHHHHHHHHHcCCEEEEECccccCCeECCeecccc--CCeEEEeCCCCCCcc-c-cCceEEEeCCHHH--HHHH
Confidence 99999999999999999999999999988765432 2211 124445556669996 6 68988885 444 2223
Q ss_pred CCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce
Q 038499 322 PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI 401 (609)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i 401 (609)
.+...++.. . . ....| .........+...+. +++.+. ...+.+.+.++.+++++++.+.|+++|++
T Consensus 205 ~~~~~~~~~-~--~----~~~~~-~~~~~~~~~~~~~~~----~a~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 270 (375)
T 2fnu_A 205 KLFRSHGML-K--K----DFFEG-EVKSIGHNFRLNEIQ----SALGLS--QLKKAPFLMQKREEAALTYDRIFKDNPYF 270 (375)
T ss_dssp HHHTBTTEE-E--S----SSSCE-EESSCCCBCCCCHHH----HHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCSSE
T ss_pred HHHHhcCCc-c--c----ccccc-ccccccccCCCCHHH----HHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 222222211 0 0 00000 000000111222222 222222 23467888899999999999999999999
Q ss_pred EEeCCCCC-CCcceE-EEEeccCCCCCcCCCCCCCCCCCCC-ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCC---
Q 038499 402 KILGNTST-KRQAIL-SFNIHSSTINSSLGENTKTETDKPL-HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD--- 475 (609)
Q Consensus 402 ~v~~~~~~-~r~~~~-~f~~~~~~~~~~~~~~~~~~~~~~l-~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~--- 475 (609)
++..+.+. ...+.+ .+.+.. . .. +...+.+.|.+ .||.++.+| . | ++.+..++
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~-~---------------~~~~~~~l~~~L~~-~gi~v~~~~--~-p-~~~~~~~~~~~ 329 (375)
T 2fnu_A 271 TPLHPLLKDKSSNHLYPILMHQ-K---------------FFTCKKLILESLHK-RGILAQVHY--K-P-IYQYQLYQQLF 329 (375)
T ss_dssp EESGGGCSSCCCCSCEEEEECG-G---------------GGGGHHHHHHHHHH-TTEECBCCC--C-C-GGGSHHHHHHH
T ss_pred cccCCCCCCCcceEEEEEEeCc-c---------------ccchHHHHHHHHHH-CCCCccccc--c-c-cccchhhhcCC
Confidence 98765211 122232 333332 1 02 46788888865 599999543 2 2 11100000
Q ss_pred ----hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 476 ----EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 476 ----~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.+.+... ..+++||+++.++|++|+++++++|+++++..
T Consensus 330 ~~~~~~~~~~~-----------~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 372 (375)
T 2fnu_A 330 NTAPLKSAEDF-----------YHAEISLPCHANLNLESVQNIAHSVLKTFESF 372 (375)
T ss_dssp CCCCCHHHHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCChHHHHH-----------HhCEEEecCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 0000000 13789999999999999999999999987653
|
| >1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-26 Score=246.71 Aligned_cols=343 Identities=14% Similarity=0.066 Sum_probs=231.8
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCc-EEEeCChHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDA-MIFCGSGTTAA 152 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~-vift~sGttaa 152 (609)
++++|+.+... +.++.+.+++.+.+.... . .|.......++++.+.+++++.+|. +++ + |++| +|++++
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~---~--~y~~~~g~~~l~~~la~~~~~~~g~~~~~~-~~v~~~-~g~~~a 99 (389)
T 1gd9_A 27 DVISLGIGEPDFDTPQHIKEYAKEALDKGL---T--HYGPNIGLLELREAIAEKLKKQNGIEADPK-TEIMVL-LGANQA 99 (389)
T ss_dssp SCEECCCCSCSSCCCHHHHHHHHHHHHTTC---C--SCCCTTCCHHHHHHHHHHHHHHHCCCCCTT-TSEEEE-SSTTHH
T ss_pred CeEecCCCCCCCCCCHHHHHHHHHHHhCCC---C--CCCCCCCcHHHHHHHHHHHHHHhCCCCCCC-CeEEEc-CChHHH
Confidence 46777766554 356788888887775311 0 1111112234444444444444484 455 7 9998 677778
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhcc
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKD 230 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~ 230 (609)
+..++..+ +++|| .|++..+.|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 100 ~~~~~~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~---- 158 (389)
T 1gd9_A 100 FLMGLSAF---------------LKDGE--EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT---- 158 (389)
T ss_dssp HHHHHTTT---------------CCTTC--EEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC----
T ss_pred HHHHHHHh---------------CCCCC--EEEEcCCCchhHHHHHHHCCCEEEEeccCCccCCCCCHHHHHHhcC----
Confidence 88887765 36788 699999999999988999999999999875 45789999999997
Q ss_pred CCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCCC-CCCccEEEEcCCCCCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQ-TDGYDAIFLSTHKFLGG 302 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~-~~~~D~v~~S~hK~lgg 302 (609)
++++++++++++||||.+.+ +++|+++|++||+++|+|++++.+.. ..++..+. ..+.|+++.|+||++|.
T Consensus 159 -~~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 237 (389)
T 1gd9_A 159 -DKTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAM 237 (389)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTC
T ss_pred -cCceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChhhcCC
Confidence 57899999999999999985 88999999999999999999886543 12232221 12568999999999974
Q ss_pred CC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHHHHhcCHHHH
Q 038499 303 PG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKEYIGHEVI 380 (609)
Q Consensus 303 p~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~~~g~~~i 380 (609)
|+ .+|++++++++ ++.+.+...+ ...+.+...+.+ .+++... .+..+.+.+
T Consensus 238 ~G~r~G~~~~~~~~--~~~l~~~~~~------------------------~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~ 290 (389)
T 1gd9_A 238 TGWRLGFVAAPSWI--IERMVKFQMY------------------------NATCPVTFIQYAAAKALKDE-RSWKAVEEM 290 (389)
T ss_dssp GGGCCEEEECCHHH--HHHHHHHHTT------------------------TTCSCCHHHHHHHHHHHTCH-HHHHHHHHH
T ss_pred cccceEEEEECHHH--HHHHHHHHhh------------------------hccCCCHHHHHHHHHHHhCC-CcchHHHHH
Confidence 42 37999999877 2222111000 001122222211 2222110 111145677
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccC
Q 038499 381 KKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGG 460 (609)
Q Consensus 381 ~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G 460 (609)
.++.+++++++.+.|+++ ++++..+ ..+++.+...+ .. ..+...+.+.|.+++||.+++|
T Consensus 291 ~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-~~--------------~~~~~~~~~~l~~~~gi~v~~g 350 (389)
T 1gd9_A 291 RKEYDRRRKLVWKRLNEM-GLPTVKP----KGAFYIFPRIR-DT--------------GLTSKKFSELMLKEARVAVVPG 350 (389)
T ss_dssp HHHHHHHHHHHHHHHHHT-TCCCCCC----CBTTEECCBCG-GG--------------TCCHHHHHHHHHHHTCEECEEG
T ss_pred HHHHHHHHHHHHHHHHHc-CCeecCC----CeeeEEEEecc-CC--------------CCCHHHHHHHHHHhCCEEEeCc
Confidence 788888899999999877 7776544 23444333222 10 1356788888874579999988
Q ss_pred cccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 461 CACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 461 ~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..|... .++++||+++. ++++++.++++|+++++.
T Consensus 351 ~~~~~~---------------------------~~~~iRi~~~~--~~~~i~~~l~~l~~~~~~ 385 (389)
T 1gd9_A 351 SAFGKA---------------------------GEGYVRISYAT--AYEKLEEAMDRMERVLKE 385 (389)
T ss_dssp GGGCGG---------------------------GTTBEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred hhhCCC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 766511 14799999984 899999999999998765
|
| >3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.8e-26 Score=247.41 Aligned_cols=346 Identities=10% Similarity=-0.076 Sum_probs=238.4
Q ss_pred CceEEecCCCC-----CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC-----CCCCCcEEEe
Q 038499 76 RRLTYADHTAS-----GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG-----GGQEDAMIFC 145 (609)
Q Consensus 76 ~~~vyld~~a~-----g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g-----~~~~~~vift 145 (609)
+++++|+.+.. .+.++.|.+++.+.+.....+ . |.. .....++++.++++++ .+++ +|++|
T Consensus 54 ~~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~--~--y~~----~~g~~~lr~~la~~~~~~~~~~~~~-~v~~t 124 (427)
T 3dyd_A 54 KTMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYN--G--YAP----SIGFLSSREEIASYYHCPEAPLEAK-DVILT 124 (427)
T ss_dssp SCCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSS--S--CCC----TTCCHHHHHHHHHHHCBTTBCCCGG-GEEEE
T ss_pred CCEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCC--C--CCC----CCCcHHHHHHHHHHHhhcCCCCChH-HEEEe
Confidence 36788877653 367788999988877532111 0 111 1125678999999998 5565 89998
Q ss_pred CChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHH
Q 038499 146 GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRS 223 (609)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~ 223 (609)
+|+++++..++..+ .++|| .|+++.+.|+.+...++..|++++.++.++ ++.+|+++|++
T Consensus 125 -~g~t~al~~~~~~l---------------~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~ 186 (427)
T 3dyd_A 125 -SGCSQAIDLCLAVL---------------ANPGQ--NILVPRPGFSLYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEY 186 (427)
T ss_dssp -SSHHHHHHHHHHHH---------------CCTTC--EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHS
T ss_pred -cCcHHHHHHHHHHh---------------cCCCC--EEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHH
Confidence 77888899888876 36888 689999999998888999999999999864 56789999999
Q ss_pred HHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEEcC
Q 038499 224 KLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFLST 296 (609)
Q Consensus 224 al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~S~ 296 (609)
+++ ++++++++++++||||.+.| +++|+++|++||+++|+|++++... ....+..+..+...+++.|+
T Consensus 187 ~l~-----~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~ 261 (427)
T 3dyd_A 187 LID-----EKTACLIVNNPSNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGL 261 (427)
T ss_dssp SCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEES
T ss_pred Hhc-----cCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeec
Confidence 997 57899999999999999999 8999999999999999999987532 22233332111223667799
Q ss_pred CCCCCCCC-CcEEEEEechhhc-----cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHH
Q 038499 297 HKFLGGPG-SPGILLMTKALYQ-----LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFW 370 (609)
Q Consensus 297 hK~lggp~-g~G~L~~~~~~~~-----l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~ 370 (609)
||.+|+|+ .+|++++++.... ++.+. ..... ..+++......+...+.
T Consensus 262 sK~~~~~G~riG~~~~~~~~~~~~~~i~~~l~------------------------~~~~~--~~~~~~~~~~a~~~~L~ 315 (427)
T 3dyd_A 262 AKRWLVPGWRLGWILIHDRRDIFGNEIRDGLV------------------------KLSQR--ILGPCTIVQGALKSILC 315 (427)
T ss_dssp TTTSSCGGGCCEEEEEECSTTSSHHHHHHHHH------------------------HHHHH--HCCSCHHHHHHHHHHHH
T ss_pred cccCCCcCcceEEEEecCcchhhHHHHHHHHH------------------------HHHhc--cCCCCHHHHHHHHHHHH
Confidence 99987553 4899999853200 11110 00001 12233322221111111
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEE-EeccCCCCCcCCCCCCCCCCCCCChHHHHHHH
Q 038499 371 VKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSF-NIHSSTINSSLGENTKTETDKPLHGPFVATLL 449 (609)
Q Consensus 371 ~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f-~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 449 (609)
.....+.+.+.++.+++++++.+.|+++|+++++.+. .+++.+ .+.. .. -....+..++++.|
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~p~----~g~~~~~~l~~-~~-----------~~~~~~~~~~~~~l 379 (427)
T 3dyd_A 316 RTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVRPS----GAMYLMVGIEM-EH-----------FPEFENDVEFTERL 379 (427)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCS----BTTEEEEEECG-GG-----------CTTCSSHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecCCC----eeEEEEEecCH-hh-----------cCCCCCHHHHHHHH
Confidence 0012345677788888999999999988999887652 344444 3331 10 00113567788887
Q ss_pred hhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 450 NDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 450 ~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
.+++||.+++|..|.. ++++||+++ ++++++++++++|++++++..
T Consensus 380 ~~~~gV~v~~g~~~~~-----------------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~~~ 425 (427)
T 3dyd_A 380 VAEQSVHCLPATCFEY-----------------------------PNFIRVVIT--VPEVMMLEACSRIQEFCEQHY 425 (427)
T ss_dssp HHHHCEECEEGGGGTC-----------------------------TTEEEEESC--SCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHCCEEEECCcccCC-----------------------------CCeEEEEEC--CCHHHHHHHHHHHHHHHHHhh
Confidence 6667999998876651 489999987 799999999999999887643
|
| >3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-26 Score=244.46 Aligned_cols=356 Identities=13% Similarity=0.007 Sum_probs=233.8
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcC-C-ccCCCCCCchhhHHHHHHHHHHHHHHHHHhC------CCCCCcEEEeCC
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLP-F-YGNTHTCDSYVGQHTTNMVHEASNYIKKCLG------GGQEDAMIFCGS 147 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~-~-~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g------~~~~~~vift~s 147 (609)
.++.|+.+... +.++.|.+++.+.+.. . ...+.. .+ ..++|+.++++++ ++++ +|++| +
T Consensus 45 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~----~g------~~~lr~~la~~~~~~~g~~~~~~-~i~~t-~ 112 (437)
T 3g0t_A 45 KFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYPNL----DG------LPELKQEASRFAKLFVNIDIPAR-ACVPT-V 112 (437)
T ss_dssp CCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCCCT----TC------CHHHHHHHHHHHHHHHCCCCCGG-GEEEE-S
T ss_pred CEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCCCC----CC------hHHHHHHHHHHHHHhhCCCCCcc-cEEEe-C
Confidence 45666555433 3467888888877652 1 111110 11 2355666666665 4455 89998 7
Q ss_pred hHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHh
Q 038499 148 GTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLE 226 (609)
Q Consensus 148 Gttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~ 226 (609)
|+++++..++..+. .+++||+..|+++.+.|+++...++..|++++.+++++ ++.+|+++|++++.
T Consensus 113 g~t~al~~~~~~l~-------------~~~~gd~~~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~ 179 (437)
T 3g0t_A 113 GSMQGCFVSFLVAN-------------RTHKNREYGTLFIDPGFNLNKLQCRILGQKFESFDLFEYRGEKLREKLESYLQ 179 (437)
T ss_dssp HHHHHHHHHHHHHT-------------TSCTTCSCCEEEEESCCHHHHHHHHHHTCCCEEEEGGGGCTTHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHh-------------cCCCCCccEEEEeCCCcHhHHHHHHHcCCEEEEEeecCCCCccCHHHHHHHHh
Confidence 88889999887761 01678721388888999999989999999999999975 44689999999994
Q ss_pred hhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCccc--ccC-------CCCC-CCCccEEE
Q 038499 227 LYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE--IDV-------RSGQ-TDGYDAIF 293 (609)
Q Consensus 227 ~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~--id~-------~~~~-~~~~D~v~ 293 (609)
. ++++++++++++||||.+.| +++|+++|++||+++|+|++++..... ..+ .... ..+.++++
T Consensus 180 ~----~~~~~v~l~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 255 (437)
T 3g0t_A 180 T----GQFCSIIYSNPNNPTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILA 255 (437)
T ss_dssp T----TCCCEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEE
T ss_pred c----CCceEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEE
Confidence 3 68999999999999999987 667899999999999999998753211 111 1111 13567899
Q ss_pred EcCCCCCCCC-CCcEEEEEechhhccC-CCCCCcc--CCCceEeecccccccccccccccccccCCChhHHHHHHHHHHH
Q 038499 294 LSTHKFLGGP-GSPGILLMTKALYQLG-SFPPSTC--GGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAF 369 (609)
Q Consensus 294 ~S~hK~lggp-~g~G~L~~~~~~~~l~-~~~p~~~--ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~ 369 (609)
.|+||++|.| .++|++++++++ ++ ....... +++. ....++... .+....+++......+. ++
T Consensus 256 ~s~sK~~~~~G~r~G~~~~~~~~--~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~~~~~~~~~~a~~-~~ 322 (437)
T 3g0t_A 256 LSSSKAFSYAGQRIGVLMISGKL--YEREYPDLEESFGRLR---------FGEALSSSA-LYALSSGATHSAQWGMA-AM 322 (437)
T ss_dssp EESTTTTSCGGGCCEEEEECHHH--HHCBCGGGHHHHSCSB---------HHHHHHTTH-HHHHHSSSCHHHHHHHH-HH
T ss_pred EcCccCCCCccceeEEEEECHHH--hhhhhhcccccccccc---------hhHHHHHHH-HhhhcCCCCHHHHHHHH-HH
Confidence 9999999833 358999999887 33 2111110 0000 000001110 11112233333322222 22
Q ss_pred HHHHhcC---HHHHHHHHHHHHHHHHHHhCCCCceEEe------CCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCC
Q 038499 370 WVKEYIG---HEVIKKQEETYIERALERLLPNQNIKIL------GNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPL 440 (609)
Q Consensus 370 ~~~~~~g---~~~i~~~~~~l~~~~~~~L~~~p~i~v~------~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l 440 (609)
+.....+ .+.+.++.+++++++.+.|+++ ++++. .+. ....++++.+.. .
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~--~~~~~~~~~~~~------------------~ 381 (437)
T 3g0t_A 323 LKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-GFNIVYDKDGNEPL--ADGFYFTVGYKG------------------M 381 (437)
T ss_dssp HHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-TEEESSCEETTEEC--CSSSEEEEEETT------------------C
T ss_pred HhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-CCEEeccccCCCCC--ceeEEEEEecCC------------------C
Confidence 1111112 7888899999999999999988 88887 220 122333333332 4
Q ss_pred ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 441 HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 441 ~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
+...+.+.|.+ .||.+++|..|..+ .++++|||+++ .+++|+++++++|++
T Consensus 382 ~~~~l~~~L~~-~gi~v~~~~~~~~~---------------------------~~~~iRis~~~-~~~e~i~~~~~~l~~ 432 (437)
T 3g0t_A 382 DSSKLIEKFVR-YGMCAITLKTTGSK---------------------------RNEAMRICTSL-LPESQFPDLEKRLQM 432 (437)
T ss_dssp CHHHHHHHHHH-TTEECEESTTTTCC---------------------------CTTCEEEECSS-SCGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHH-cCeEEeeccccCCC---------------------------CCCEEEEEEec-CCHHHHHHHHHHHHH
Confidence 67889999976 49999988776521 13789999994 499999999999999
Q ss_pred HHHh
Q 038499 521 IAIY 524 (609)
Q Consensus 521 v~~~ 524 (609)
++++
T Consensus 433 ~~~~ 436 (437)
T 3g0t_A 433 LNAE 436 (437)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8765
|
| >1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-26 Score=247.76 Aligned_cols=342 Identities=12% Similarity=-0.030 Sum_probs=232.9
Q ss_pred ceEEecCCCC---C-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHH
Q 038499 77 RLTYADHTAS---G-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTT 150 (609)
Q Consensus 77 ~~vyld~~a~---g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGtt 150 (609)
++++++.+.. . +.++.+.+++.+.+.... . .|.......++.+.+.+++.+..| .+++ +|++| +|++
T Consensus 39 ~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~l~~~la~~l~~~~g~~~~~~-~v~~t-~g~~ 111 (406)
T 1xi9_A 39 KVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH----N-YYGDSEGLPELRKAIVEREKRKNGVDITPD-DVRVT-AAVT 111 (406)
T ss_dssp CCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHHH
T ss_pred CEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCcHHHHHHHHHHHHHhcCCCCCHH-HEEEc-CChH
Confidence 4678877665 2 456788888877775321 0 011111123344444444444444 4454 89998 7888
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhh
Q 038499 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELY 228 (609)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~ 228 (609)
+++..++.++ +++|| .|+++.++|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 112 ~al~~~~~~l---------------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~-- 172 (406)
T 1xi9_A 112 EALQLIFGAL---------------LDPGD--EILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT-- 172 (406)
T ss_dssp HHHHHHHHHH---------------CCTTC--EEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC--
T ss_pred HHHHHHHHHh---------------CCCCC--EEEEcCCCCccHHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhC--
Confidence 8999888876 36888 699999999999988889999999999875 45689999999998
Q ss_pred ccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc---cccCCCCCCCCc-cEEEEcCCCCCC
Q 038499 229 KDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---EIDVRSGQTDGY-DAIFLSTHKFLG 301 (609)
Q Consensus 229 ~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~id~~~~~~~~~-D~v~~S~hK~lg 301 (609)
++++++++++++||||.+.| +++|+++|++||+++|+|++++.+.. ...+..+. .+. |+++.|+||++|
T Consensus 173 ---~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~-~~~~~i~~~s~sK~~~ 248 (406)
T 1xi9_A 173 ---DRTKAIAVINPNNPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLT-KDVPVIVMNGLSKVYF 248 (406)
T ss_dssp ---TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHC-SSSCEEEEEESTTTTC
T ss_pred ---cCceEEEEECCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHcC-CCceEEEEeccccccC
Confidence 57899999999999999987 88999999999999999999876432 11121111 245 788999999997
Q ss_pred CCC-CcEEEE--Eec----hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH-HHHHHHHHHHH
Q 038499 302 GPG-SPGILL--MTK----ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM-IRAALAFWVKE 373 (609)
Q Consensus 302 gp~-g~G~L~--~~~----~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~-~~aal~~~~~~ 373 (609)
.|+ .+|+++ .++ ++ ++.+... .... .+.+.+.+. +.+++.. .
T Consensus 249 ~~G~r~G~~~~~~~~~~~~~l--~~~l~~~------------------------~~~~-~~~~~~~~~a~~~~l~~---~ 298 (406)
T 1xi9_A 249 ATGWRLGYMYFVDPENKLSEV--REAIDRL------------------------ARIR-LCPNTPAQFAAIAGLTG---P 298 (406)
T ss_dssp CGGGCCEEEEEECTTCTTHHH--HHHHHHH------------------------HHHT-CCSCSHHHHHHHHHHHS---C
T ss_pred CCccEEEEEEEecCchhHHHH--HHHHHHH------------------------HHhh-cCCCHHHHHHHHHHHhC---C
Confidence 332 379999 777 65 2222100 0001 122222221 1222210 1
Q ss_pred hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhc
Q 038499 374 YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLF 453 (609)
Q Consensus 374 ~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~ 453 (609)
..+.+.+.++.+++++++.+.|+++|++++..+ ..+++.|...+ .. ...+...+.+.|.++.
T Consensus 299 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~----~~~~~~~~~~~-~~-------------~~~~~~~l~~~l~~~~ 360 (406)
T 1xi9_A 299 MDYLKEYMKKLKERRDYIYKRLNEIPGISTTKP----QGAFYIFPKIE-VG-------------PWKNDKEFVLDVLHNA 360 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTSTTEECCCC----CBSSEECCEEC-SC-------------SCSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecC----CeeEEEEEecC-cc-------------CCCCHHHHHHHHHHhC
Confidence 112567778888899999999998889887654 23555553333 10 0135678888886457
Q ss_pred CcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 454 GIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 454 GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
||.+++|..|... .++++||+++ +++++++.++++|+++++..
T Consensus 361 gi~v~~g~~f~~~---------------------------~~~~lRis~~--~~~~~i~~~~~~l~~~l~~~ 403 (406)
T 1xi9_A 361 HVLFVHGSGFGEY---------------------------GAGHFRAVFL--PPIEILEEAMDRFEKFMKER 403 (406)
T ss_dssp CEECEEGGGGCGG---------------------------GTTBEEEECC--SCHHHHHHHHHHHHHHHHHC
T ss_pred CEEEeCchhcCCC---------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHHH
Confidence 9999988766410 1489999998 89999999999999987653
|
| >2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-27 Score=249.56 Aligned_cols=346 Identities=16% Similarity=0.143 Sum_probs=234.8
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCc--cCCCCCCchhh-HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFY--GNTHTCDSYVG-QHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~--~n~~~~~~~~~-~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
++|+++.++.++.|.+++.+.+...+ ++++.. +..+ ....++.+++|+++++++|.+++ .+++++| ++++..+
T Consensus 26 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~r~~la~~~g~~~~--~i~~~sG-t~a~~~a 101 (405)
T 2vi8_A 26 IELIASENFVSRAVMEAQGSVLTNKYAEGYPGRR-YYGGCEYVDIVEELARERAKQLFGAEHA--NVQPHSG-AQANMAV 101 (405)
T ss_dssp EECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEE--ECCCSSH-HHHHHHH
T ss_pred eeeccCcccCCHHHHHHHHHHhhcccccCCCCcc-ccccchHHHHHHHHHHHHHHHHhCCCce--EEEecCc-HHHHHHH
Confidence 56666677789999999988775322 333321 1122 23455666788999999998743 4544588 6678877
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH---HHcC--ceEEEEecC-CCCCCCHHHHHHHHhhhcc
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW---RQSL--AEVVEIGLD-DDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G--~~vv~v~~~-~~g~ld~e~L~~al~~~~~ 230 (609)
+.++ +++|| .|+++.++|+++...+ ...| .+++.++++ .++.+|+++|++++++
T Consensus 102 ~~~~---------------~~~gd--~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~--- 161 (405)
T 2vi8_A 102 YFTV---------------LEHGD--TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL--- 161 (405)
T ss_dssp HHHH---------------CCTTC--EEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---
T ss_pred HHHh---------------cCCCC--EEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHh---
Confidence 7765 36888 6888888998875321 2334 478888876 4678999999999984
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~ 310 (609)
.++++++++ ++| .|...|+++|.++|++||+++|+|++++.+....+.........|++++|+||+++||.| |+++
T Consensus 162 -~~~~~v~~~-~~~-~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-G~~~ 237 (405)
T 2vi8_A 162 -HRPKLIVAA-AAA-YPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMIL 237 (405)
T ss_dssp -HCCSEEEEC-CSS-CCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEE
T ss_pred -cCCeEEEEe-CCC-CCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCC-eEEE
Confidence 267887774 333 467779999999999999999999998865433333222112579999999999998888 9999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH--HHHHHHHHHhcCHHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR--AALAFWVKEYIGHEVIKKQEETYI 388 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~--aal~~~~~~~~g~~~i~~~~~~l~ 388 (609)
+++++. +.+.+.. .....++++..+... +++... +..+.+.+.++.++++
T Consensus 238 ~~~~~~--~~l~~~~------------------------~~~~~~~~~~~~~aa~~~al~~~--~~~~~~~~~~~~~~~~ 289 (405)
T 2vi8_A 238 CQEQFA--KQIDKAI------------------------FPGIQGGPLMHVIAAKAVAFGEA--LQDDFKAYAKRVVDNA 289 (405)
T ss_dssp ECHHHH--HHHHHHH------------------------TTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHH
T ss_pred EcHHHH--HHHHhhh------------------------cccccCCCCHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHH
Confidence 998772 2221110 011234555544333 333332 2346788889999999
Q ss_pred HHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh
Q 038499 389 ERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG 468 (609)
Q Consensus 389 ~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~ 468 (609)
+++.+.|+++ +++++.+. ....++++.+.. .. .+...+.+.|.+ .||.+++|..|....+
T Consensus 290 ~~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~-~gi~v~~g~~~~~~~~ 349 (405)
T 2vi8_A 290 KRLASALQNE-GFTLVSGG--TDNHLLLVDLRP-QQ---------------LTGKTAEKVLDE-VGITVNKNTIPYDPES 349 (405)
T ss_dssp HHHHHHHHHT-TCEEGGGS--CSSSEEEEECGG-GT---------------CCHHHHHHHHHH-HTEECEEECCTTCSSC
T ss_pred HHHHHHHHhC-CCeEecCC--CCceEEEEEccC-CC---------------CCHHHHHHHHHH-cCceeccCcCccccCC
Confidence 9999999888 88887652 133445554432 11 356788888855 6999998764310000
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCC----CCCHHHHHHHHHHHHHHHHh
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPY----YMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~----~~t~eeid~ll~al~~v~~~ 524 (609)
. ..++++|++++. .++++|+++++++|+++++.
T Consensus 350 ~-----------------------~~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 386 (405)
T 2vi8_A 350 P-----------------------FVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp T-----------------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred C-----------------------CCCCceEEeeeeeeecCCCHHHHHHHHHHHHHHHhc
Confidence 0 014789999986 46799999999999998754
|
| >2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.7e-27 Score=248.49 Aligned_cols=342 Identities=13% Similarity=0.046 Sum_probs=234.1
Q ss_pred ceEEecCCCCC---CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG---RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g---~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal 153 (609)
.+++++.+... ..++.+.+++.+.+......... |.. .....++++.+++++|.+++ +|++| +|+++++
T Consensus 33 ~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~--y~~----~~~~~~l~~~la~~~g~~~~-~v~~~-~g~~~al 104 (397)
T 2zyj_A 33 GILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQ--YSP----TEGYAPLRAFVAEWIGVRPE-EVLIT-TGSQQAL 104 (397)
T ss_dssp TCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTS--CCC----TTCCHHHHHHHHHHHTSCGG-GEEEE-SHHHHHH
T ss_pred CceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhC--CCC----CCCCHHHHHHHHHHhCCChh-hEEEe-ccHHHHH
Confidence 46677655432 25677888887766431000000 100 11246789999999997766 89998 8888899
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~ 233 (609)
..++.++ +++|| .|++..+.|+++...++..|++++.++.++++ +|+++|++++++ .+
T Consensus 105 ~~~~~~~---------------~~~gd--~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~-~d~~~l~~~l~~----~~ 162 (397)
T 2zyj_A 105 DLVGKVF---------------LDEGS--PVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEG-PDLDALEEVLKR----ER 162 (397)
T ss_dssp HHHHHHH---------------CCTTC--EEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHH----CC
T ss_pred HHHHHHh---------------CCCCC--EEEEeCCCcHHHHHHHHHcCCEEEecCcCCCC-CCHHHHHHHHhh----cC
Confidence 9888876 36888 68999999999998899899999999987765 899999999984 36
Q ss_pred ceEE-EEecccCccccccCHH---HHHHHHHHhCCeEEEeccccCCcc----cccCCCCCCC---CccEEEEcCCCCCCC
Q 038499 234 PILG-SFSACSNVTGIYSDTR---SIARLLHQYGGFACFDFAASGPYV----EIDVRSGQTD---GYDAIFLSTHKFLGG 302 (609)
Q Consensus 234 ~~lv-~~s~~sn~TG~~~dl~---~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~~---~~D~v~~S~hK~lgg 302 (609)
++++ ++++++||||.+.|.+ +|+++|++||+++|+|++++.... ..++..+..+ +.++++.|+||++|
T Consensus 163 ~~~v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~- 241 (397)
T 2zyj_A 163 PRFLYLIPSFQNPTGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLS- 241 (397)
T ss_dssp CSCEEECCBSCTTTCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTC-
T ss_pred CeEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEeccccccc-
Confidence 8876 5799999999998865 899999999999999999886432 1222222111 23488899999999
Q ss_pred C-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHh--cCHHH
Q 038499 303 P-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEY--IGHEV 379 (609)
Q Consensus 303 p-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~--~g~~~ 379 (609)
| .++|++++++++ ++.+... ......+++.+.+. ++.+++ ... ...+.
T Consensus 242 ~G~r~G~~~~~~~~--~~~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l-~~~~~~~~~~ 292 (397)
T 2zyj_A 242 PGLRVAFAVAHPEA--LQKLVQA------------------------KQGADLHTPMLNQM--LVHELL-KEGFSERLER 292 (397)
T ss_dssp GGGCCEEEECCHHH--HHHHHHH------------------------HHHHHSSCCHHHHH--HHHHHH-TTTHHHHHHH
T ss_pred ccceeEEEecCHHH--HHHHHHH------------------------HHhhcCCCCHHHHH--HHHHHH-HhCCHHHHHH
Confidence 5 358999999877 2222111 01112334333332 122222 111 12456
Q ss_pred HHHHHHHHHHHHHHHhCC-CC-ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEe
Q 038499 380 IKKQEETYIERALERLLP-NQ-NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA 457 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~-~p-~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v 457 (609)
+.++.+++++++.+.|++ +| ++++..+. .+++.+...+ .. .+...+.+.|.++ ||.+
T Consensus 293 ~~~~~~~~~~~l~~~L~~~~~~g~~~~~~~----~g~~~~~~~~-~~---------------~~~~~~~~~l~~~-gi~v 351 (397)
T 2zyj_A 293 VRRVYREKAQAMLHALDREVPKEVRYTRPK----GGMFVWMELP-KG---------------LSAEGLFRRALEE-NVAF 351 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTSEECCCS----BSSEEEEECS-TT---------------CCHHHHHHHHHHT-TEEE
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEccCC----ccEEEEEEcC-CC---------------CCHHHHHHHHHHC-CCEE
Confidence 677777888888888876 57 68876542 2344443333 11 3577888888775 9999
Q ss_pred ccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 458 RGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 458 ~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
++|..|.... ..++++||+++.. +++|++.++++|+++++..
T Consensus 352 ~~g~~f~~~~-------------------------~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 393 (397)
T 2zyj_A 352 VPGGPFFANG-------------------------GGENTLRLSYATL-DREGIAEGVRRLGRALKGL 393 (397)
T ss_dssp EESGGGCTTS-------------------------CCTTEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred echHHhcCCC-------------------------CCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 9887665210 0258999999875 8999999999999988654
|
| >1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.9e-26 Score=248.92 Aligned_cols=361 Identities=16% Similarity=0.083 Sum_probs=238.0
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
..+|++ ++.+...+.+.+++.+.+.. | ++... ...+.+..+++.++++++++++|.+. .++++++|+. ++...
T Consensus 67 ~~~~lg-~~~~~~~p~v~~~~~~~~~~-~-~~~~~-~~~~~g~~~l~~~l~~~la~~~g~~~--~~~~~~ggt~-a~~~a 139 (474)
T 1wyu_B 67 TFYPLG-SCTMKYNPKLHEEAARLFAD-L-HPYQD-PRTAQGALRLMWELGEYLKALTGMDA--ITLEPAAGAH-GELTG 139 (474)
T ss_dssp SCCCBT-TTCCCCCCHHHHHHHHTTSS-C-CTTSC-GGGCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHH-HHHHH
T ss_pred Cccccc-cccccCCHHHHHHHHHHHHh-c-CCCCc-hhhChHHHHHHHHHHHHHHHHHCCCc--eeecChHHHH-HHHHH
Confidence 356777 44455555666666665321 1 23221 11356778999999999999999874 4667755554 45443
Q ss_pred HHHhcccchhhHHHHHHhhhcCCC---ceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCC
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEE---RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~ 233 (609)
+.++. .. ..++|| +..|+++...|+++...++..|++++.|+.++++.+|+++|+++++ ++
T Consensus 140 l~~~~--------~~---~~~~Gd~~~r~~Vlv~~~~h~~~~~~~~~~G~~vv~v~~~~~~~~d~~~L~~~i~-----~~ 203 (474)
T 1wyu_B 140 ILIIR--------AY---HEDRGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELG-----PH 203 (474)
T ss_dssp HHHHH--------HH---HHHTTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCS-----TT
T ss_pred HHHHH--------HH---HHhcCCccCCCEEEEeCCcChhhHHHHHHCCCEEEEecCCCCCCcCHHHHHHhhC-----CC
Confidence 22210 00 013554 3469999999999999999999999999998889999999999998 57
Q ss_pred ceEEEEecccCccccc-cCHHHHHHHHHHhCCeEEEeccccCCcc-cccCCCCCCCCccEEEEcCCCCCCCCC-----Cc
Q 038499 234 PILGSFSACSNVTGIY-SDTRSIARLLHQYGGFACFDFAASGPYV-EIDVRSGQTDGYDAIFLSTHKFLGGPG-----SP 306 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~-~dl~~I~~la~~~g~~vivD~A~~~~~~-~id~~~~~~~~~D~v~~S~hK~lggp~-----g~ 306 (609)
+++++++++ |+||.+ .|+++|+++||+||+++|+|++++.+.. ..+... .++|++++|+||++++|. ++
T Consensus 204 t~~v~~~~p-n~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~~~~~~---~g~di~~~s~~K~~~~p~g~gG~~~ 279 (474)
T 1wyu_B 204 VAALMLTNP-NTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGWARPGD---MGFDVVHLNLHKTFTVPHGGGGPGS 279 (474)
T ss_dssp EEEEEECSS-CTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTTCCHHH---HTCSEEECCTTTTTCCCCTTSCCCC
T ss_pred ceEEEEECC-CCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccCCCccc---CCCcEEEEeCccccccCCCCCCCCe
Confidence 999999987 689998 6999999999999999999999875543 122111 268999999999999884 58
Q ss_pred EEEEEechhhccCCCC-CCcc-CCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHH-HHhcCHHHHHHH
Q 038499 307 GILLMTKALYQLGSFP-PSTC-GGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWV-KEYIGHEVIKKQ 383 (609)
Q Consensus 307 G~L~~~~~~~~l~~~~-p~~~-ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~-~~~~g~~~i~~~ 383 (609)
|++++++++ ++.+. +... +|.. |...+.. .....+...++.+.... .++++++. ....+++.+.++
T Consensus 280 G~~~~~~~l--~~~l~~~~~~~~g~~--~~~~~~~------~~~~~~~~~~~~~~~~~-~aa~~~l~~~g~~~l~~~~~~ 348 (474)
T 1wyu_B 280 GPVGVKAHL--APYLPVPLVERGEEG--FYLDFDR------PKSIGRVRSFYGNFLAL-VRAWAYIRTLGLEGLKKAAAL 348 (474)
T ss_dssp CCEEECGGG--GGGCCSCEEEECSSC--EEEECCC------TTCCCCSSSTTSCHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEcHHH--HHhCCCCeeeccCCe--eEecccC------cccCcccccCcCcHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 999999988 44554 2211 1111 1100000 00012333444454433 33333331 123356666888
Q ss_pred HHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCccc
Q 038499 384 EETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
..++++++.+.|+++ ++++..+. .....+.+.+.. + .+..++.+.|.++ ||.+. +..+
T Consensus 349 ~~~~~~~l~~~L~~~-g~~~~~~~--~~~~~~~~~~~~-~----------------~~~~~l~~~L~~~-Gi~~~-~~~~ 406 (474)
T 1wyu_B 349 AVLNARYLKELLKEK-GYRVPYDG--PSMHEFVAQPPE-G----------------FRALDLAKGLLEL-GFHPP-TVYF 406 (474)
T ss_dssp HHHHHHHHHHHHHHT-TCBCSSCS--SCCSCEEEBCST-T----------------CCHHHHHHHHHHT-TCCCC-EESC
T ss_pred HHHHHHHHHHHHhhc-CcEecCCC--CcceEEEEEcCC-C----------------CCHHHHHHHHHHC-Ccccc-cccc
Confidence 889999999999887 77764321 111112222211 1 3578899999765 99753 2211
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
. . . .++++||+++.++|++|+++++++|+++++.
T Consensus 407 ~----~---~--------------------~~~~lRis~~~~~t~e~id~~~~~L~~~~~~ 440 (474)
T 1wyu_B 407 P----L---I--------------------VKEALMVEPTETEAKETLEAFAEAMGALLKK 440 (474)
T ss_dssp S----T---T--------------------STTCEEECCCTTSCHHHHHHHHHHHHHHHTS
T ss_pred c----c---c--------------------cCCEEEEEeecCCCHHHHHHHHHHHHHHHHh
Confidence 1 0 0 1478999999999999999999999998765
|
| >3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-26 Score=242.28 Aligned_cols=321 Identities=12% Similarity=0.003 Sum_probs=227.0
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcC----CccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLP----FYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTT 150 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~----~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtt 150 (609)
+.+++|+.+... +.++.|.+++.+.+.. .+.++.. ...++++.+++++|++++ +|++| +|++
T Consensus 26 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~~-----------~~~~lr~~la~~~g~~~~-~i~~t-~g~~ 92 (360)
T 3hdo_A 26 ASWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPSA-----------SSQKLREVAGELYGFDPS-WIIMA-NGSD 92 (360)
T ss_dssp TTSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCCS-----------SCHHHHHHHHHHHTCCGG-GEEEE-SSHH
T ss_pred cceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCCC-----------chHHHHHHHHHHhCcCcc-eEEEc-CCHH
Confidence 367888876554 4567899999887764 2222221 135789999999998776 89998 7788
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc
Q 038499 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~ 230 (609)
+++..++..+ +++|| .|++..+.|+++...++..|++++.++.++++.+ ++++++
T Consensus 93 ~al~~~~~~l---------------~~~gd--~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~--~~l~~~------ 147 (360)
T 3hdo_A 93 EVLNNLIRAF---------------AAEGE--EIGYVHPSYSYYGTLAEVQGARVRTFGLTGDFRI--AGFPER------ 147 (360)
T ss_dssp HHHHHHHHHH---------------CCTTC--EEEEESSSCTHHHHHHHHHTCEEEEECBCTTSSB--TTCCSS------
T ss_pred HHHHHHHHHH---------------hCCCC--EEEEcCCChHHHHHHHHHCCCEEEEeeCCCCCCH--HHHHhh------
Confidence 8899888876 37888 6999999999999899999999999999876655 433222
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC--cccccCCCCCCCCccEEEEcCCCCCCCC-CCcE
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP--YVEIDVRSGQTDGYDAIFLSTHKFLGGP-GSPG 307 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~--~~~id~~~~~~~~~D~v~~S~hK~lggp-~g~G 307 (609)
.+++++++++++||||.+.|+++|.++|+++|+++|+|++++.. .....+. ...+.++++.|+||++|.| .++|
T Consensus 148 -~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~--~~~~~~i~~~s~sK~~g~~G~r~G 224 (360)
T 3hdo_A 148 -YEGKVFFLTTPNAPLGPSFPLEYIDELARRCAGMLVLDETYAEFAESNALELV--RRHENVVVTRTLSKSYSLAGMRIG 224 (360)
T ss_dssp -BCSSEEEEESSCTTTCCCCCHHHHHHHHHHBSSEEEEECTTGGGSSCCCTHHH--HHCSSEEEEEESTTTTSCTTSCCE
T ss_pred -cCCCEEEEeCCCCCCCCCcCHHHHHHHHHHCCCEEEEECChHhhCCcchhHHh--ccCCCEEEEecchHhhcCCcccee
Confidence 24679999999999999999999999999999999999998742 1111110 1124568888999999744 3589
Q ss_pred EEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 038499 308 ILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETY 387 (609)
Q Consensus 308 ~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (609)
++++++++. +.+... ....+++......+. +. +.+....+.+.++.+++
T Consensus 225 ~~~~~~~~~--~~~~~~---------------------------~~~~~~~~~~~~a~~-~~-l~~~~~~~~~~~~~~~~ 273 (360)
T 3hdo_A 225 LAIARPEVI--AALDKI---------------------------RDHYNLDRLAQAACV-AA-LRDQAYLSECCRRIRET 273 (360)
T ss_dssp EEECCHHHH--HHHHHH---------------------------SCSCCSCHHHHHHHH-HH-HHCHHHHHHHHHHHHHH
T ss_pred eEeeCHHHH--HHHHHh---------------------------CCCCCCCHHHHHHHH-HH-hcCHHHHHHHHHHHHHH
Confidence 999988772 222110 001122322222211 11 11223457778888889
Q ss_pred HHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh
Q 038499 388 IERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY 467 (609)
Q Consensus 388 ~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~ 467 (609)
++++.+.|+++ ++.+..+ ...++++.+.. .+...+.+.|.+ .||.++++....
T Consensus 274 ~~~l~~~L~~~-~~~~~~~----~~~~~~~~~~~------------------~~~~~l~~~l~~-~gi~v~~~~~~~--- 326 (360)
T 3hdo_A 274 REWFTTELRSI-GYDVIPS----QGNYLFATPPD------------------RDGKRVYDGLYA-RKVLVRHFSDPL--- 326 (360)
T ss_dssp HHHHHHHHHHT-TCEECCC----SSSEEEEECTT------------------CCHHHHHHHHHH-TTEECBCCCSTT---
T ss_pred HHHHHHHHHHC-CCEEcCC----CccEEEEECCC------------------CCHHHHHHHHHH-CCEEEEECCCCC---
Confidence 99999999887 7887643 33455544332 357888888865 699999654310
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++|||++ +++|+++++++|+++.+.
T Consensus 327 --------------------------~~~~iRis~~---~~~e~~~l~~al~~~~~~ 354 (360)
T 3hdo_A 327 --------------------------LAHGMRISIG---TREEMEQTLAALKEIGEG 354 (360)
T ss_dssp --------------------------TTTSEEEECC---CHHHHHHHHHHHHHHHC-
T ss_pred --------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHhcc
Confidence 2589999997 999999999999998764
|
| >2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.9e-26 Score=244.05 Aligned_cols=336 Identities=15% Similarity=0.094 Sum_probs=225.1
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----C--CCCCCcEEEeCChHHHHHHHHHHHhcc
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----G--GGQEDAMIFCGSGTTAAIKRLQEVMGI 162 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g--~~~~~~vift~sGttaal~~l~~~l~~ 162 (609)
.++.+.+++.+.+..... ... |... ....++++.+++++ | .+++ +|++| +|+++++..++.++
T Consensus 50 ~~~~v~~a~~~~~~~~~~--~~~-y~~~----~~~~~l~~~la~~~~~~~g~~~~~~-~v~~t-~g~t~a~~~~~~~~-- 118 (407)
T 2zc0_A 50 PRAVLGEIAKEVLEKEPK--SVM-YTPA----NGIPELREELAAFLKKYDHLEVSPE-NIVIT-IGGTGALDLLGRVL-- 118 (407)
T ss_dssp CHHHHHHHHHHHHHHCGG--GGS-CCCT----TCCHHHHHHHHHHHHHHSCCCCCGG-GEEEE-SHHHHHHHHHHHHH--
T ss_pred CHHHHHHHHHHHHhhccc--ccc-CCCC----CCCHHHHHHHHHHHHHhcCCCCCcc-eEEEe-cCHHHHHHHHHHHh--
Confidence 567788888777653210 000 1111 11345566666666 8 4454 89998 78888999988876
Q ss_pred cchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccC-CCceEE-EEe
Q 038499 163 AVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDA-KRPILG-SFS 240 (609)
Q Consensus 163 ~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~-~~~~lv-~~s 240 (609)
+++|| .|++..+.|+++...++..|++++.++.++++ +|+++|+++++..... ++++++ +++
T Consensus 119 -------------~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~ 182 (407)
T 2zc0_A 119 -------------IDPGD--VVITENPSYINTLLAFEQLGAKIEGVPVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIP 182 (407)
T ss_dssp -------------CCTTC--EEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred -------------cCCCC--EEEEeCCChHHHHHHHHHcCCEEEEcccCCCC-CCHHHHHHHHHhhhcccCCceEEEECC
Confidence 36788 68999999999988888899999999987765 8999999999721101 367876 578
Q ss_pred cccCccccccCHH---HHHHHHHHhCCeEEEeccccCCcc----cccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEe
Q 038499 241 ACSNVTGIYSDTR---SIARLLHQYGGFACFDFAASGPYV----EIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMT 312 (609)
Q Consensus 241 ~~sn~TG~~~dl~---~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~ 312 (609)
+++||||.+.|.+ +|+++|++||+++|+|++++.... ..++..+...+.++++.|+||++| |+ .+|+++++
T Consensus 183 ~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~~~~ 261 (407)
T 2zc0_A 183 TGQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLG-TGFRIGWIIAE 261 (407)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTC-TTSCCEEEECC
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccC-CCcceEEEecC
Confidence 9999999999986 899999999999999999876432 122222211244678889999999 54 58999998
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHHHHh-cCHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKEY-IGHEVIKKQEETYIER 390 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~~-~g~~~i~~~~~~l~~~ 390 (609)
+++. +.+.... .....+++.+.+.+ .+++... ... .+.+.+.++.++++++
T Consensus 262 ~~~~--~~~~~~~------------------------~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~ 314 (407)
T 2zc0_A 262 GEIL--KKVLMQK------------------------QPIDFCAPAISQYIALEYLKRG-YFEKYHLEGALLGYKEKRDI 314 (407)
T ss_dssp HHHH--HHHHHHH------------------------TTTTSSSCHHHHHHHHHHHHTT-HHHHHTTTTHHHHHHHHHHH
T ss_pred HHHH--HHHHHHH------------------------HhhcCCCCHHHHHHHHHHHHcC-CchHHHHHHHHHHHHHHHHH
Confidence 8772 2221110 00111222222221 1122110 001 3455677778888888
Q ss_pred HHHHhCC-CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 391 ALERLLP-NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 391 ~~~~L~~-~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
+.+.|++ +|++++..+ ..+++.+...+ .. .+...+.+.|.+++||.+++|..|..+. .
T Consensus 315 l~~~L~~~~~~~~~~~~----~~~~~~~~~~~-~~---------------~~~~~l~~~l~~~~gi~v~~g~~~~~~~-~ 373 (407)
T 2zc0_A 315 MLKALENHLPNAEFTKP----IAGMFVMFFLP-EG---------------ADGISFANELMEREGVVVVPGKPFYTDE-S 373 (407)
T ss_dssp HHHHHHHHCTTSCBCCC----SBSSEEEEECS-TT---------------CCHHHHHHHHHHHTCEECBCSGGGCSSS-C
T ss_pred HHHHHHHhCCCCEEecC----CCcEEEEEEcC-CC---------------CCHHHHHHHHHHhCCeEEECchhccCCC-C
Confidence 9888876 577766544 23434333333 11 3577889988776799999988775220 0
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++||+++.. +++|+++++++|+++++..
T Consensus 374 ------------------------~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 404 (407)
T 2zc0_A 374 ------------------------GKNAIRLNFSRP-SKEEIPIGIKKLAKLYKEK 404 (407)
T ss_dssp ------------------------CTTEEEEECSSS-CTTHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 148999999877 8999999999999987653
|
| >3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.1e-27 Score=247.03 Aligned_cols=321 Identities=15% Similarity=0.108 Sum_probs=219.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
....++++.+++++|.+ +++++++|+. ++..++..++ +++|| .|+++.++|+++...++.
T Consensus 36 ~~~~~l~~~la~~~~~~---~~i~~~sgt~-al~~~l~~l~--------------~~~gd--~Vi~~~~~~~~~~~~~~~ 95 (373)
T 3frk_A 36 DEDKKFEQEFADYCNVN---YCIGCGNGLD-ALHLILKGYD--------------IGFGD--EVIVPSNTFIATALAVSY 95 (373)
T ss_dssp HHHHHHHHHHHHHHTSS---EEEEESCHHH-HHHHHHHHTT--------------CCTTC--EEEEETTSCTHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCC---eEEEeCCHHH-HHHHHHHHcC--------------CCCcC--EEEECCCCcHHHHHHHHH
Confidence 45788999999999985 6788866655 7888777764 47888 799999999999999999
Q ss_pred cCceEEEEecC-CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccc
Q 038499 201 SLAEVVEIGLD-DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 201 ~G~~vv~v~~~-~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~i 279 (609)
.|++++.++.+ +++.+|+++|+++++ +++++++ ++|+||.+.|+++|.++|++||+++|+|++++.+.. +
T Consensus 96 ~g~~~~~~~~~~~~~~~d~~~l~~~l~-----~~~~~v~---~~n~~G~~~~l~~i~~l~~~~~~~li~D~a~~~g~~-~ 166 (373)
T 3frk_A 96 TGAKPIFVEPDIRTYNIDPSLIESAIT-----EKTKAII---AVHLYGQPADMDEIKRIAKKYNLKLIEDAAQAHGSL-Y 166 (373)
T ss_dssp HSCEEEEECEETTTTEECGGGTGGGCC-----TTEEEEE---EECCTTCCCCHHHHHHHHHHHTCEEEEECTTCTTCE-E
T ss_pred cCCEEEEEeccccccCcCHHHHHHhcC-----CCCeEEE---EECCCcCcccHHHHHHHHHHcCCEEEEECCcccCCE-E
Confidence 99999999988 467899999999987 5788776 678999999999999999999999999999998765 4
Q ss_pred cCCCCCCCCccEEEEc--CCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCCh
Q 038499 280 DVRSGQTDGYDAIFLS--THKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP 357 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S--~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp 357 (609)
+...... ..|++++| .||++++++..|+++.+++.. .+.+.+...+|... .|. ....|.+
T Consensus 167 ~~~~~~~-~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~-~~~~~~~~~~g~~~-----------~~~-----~~~~g~~ 228 (373)
T 3frk_A 167 KGMKVGS-LGDAAGFSFYPAKNLGSLGDGGAVVTNDKDL-AEKIKALSNYGSEK-----------KYH-----HIYKGFN 228 (373)
T ss_dssp TTEETTS-SSSEEEEECCTTSSSCCSSSCEEEEESCHHH-HHHHHHHHBTTCSB-----------TTB-----CCSCCCB
T ss_pred CCEeccc-cccEEEEeCcCCCccCccceeEEEEeCCHHH-HHHHHHHHhcCccc-----------CCc-----ccccccc
Confidence 4444311 25888888 569998645468888875431 22222322222210 000 0111211
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCC
Q 038499 358 QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETD 437 (609)
Q Consensus 358 ~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~ 437 (609)
..+..+.+++.+. ...+.+.+.++.+++.+++.+.|++++ +.+..........++.|.+..
T Consensus 229 ~~~~~~~aa~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~---------------- 289 (373)
T 3frk_A 229 SRLDELQAGFLRV--KLKYLDKWNEERRKIAQKYIAGINNPN-VIIPVEADYAKHVWYTFVIRS---------------- 289 (373)
T ss_dssp CCCCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHCCCTT-EECCCCCTTEECCCSSEEEEE----------------
T ss_pred CCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCc-eEeccCCCCCceeeEEEEEEe----------------
Confidence 1011122232322 234677888899999999999999987 766433211222333344433
Q ss_pred CCCChHHHHHHHhhhcCcEeccCc----ccCChhhhhhcCC---ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHH
Q 038499 438 KPLHGPFVATLLNDLFGIQARGGC----ACAGPYGHHLLDL---DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEE 510 (609)
Q Consensus 438 ~~l~~~~v~~~L~~~~GI~v~~G~----~ca~p~~~~ll~i---~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ee 510 (609)
.+...+.+.|.+ .||.++.+. .|.+.+.. ++. ..+.+..+ ..+.+|+++++++|++|
T Consensus 290 --~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~-----------~~~~lrl~~~~~~t~~d 353 (373)
T 3frk_A 290 --EKRDELQKYLNN-NGIGTLIHYPIPIHLQQAYKD--LGFKTGNFPIAEKI-----------ANEILSIPIWYGMKNEE 353 (373)
T ss_dssp --SSHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGG--GCCCTTSSHHHHHH-----------HHHEEEECCCTTCCHHH
T ss_pred --CCHHHHHHHHHH-CCCCcccCcCCccccChHHHh--cCCCCCCCHHHHHH-----------HhCEEEccCCCCCCHHH
Confidence 146789999966 499999654 34322211 111 11222211 13789999999999999
Q ss_pred HHHHHHHHHHHHH
Q 038499 511 FEFTLEALEFIAI 523 (609)
Q Consensus 511 id~ll~al~~v~~ 523 (609)
+++++++|+++..
T Consensus 354 i~~~~~~l~~~~~ 366 (373)
T 3frk_A 354 IEYVIDKINAWKL 366 (373)
T ss_dssp HHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHhh
Confidence 9999999987654
|
| >3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=240.29 Aligned_cols=347 Identities=13% Similarity=0.033 Sum_probs=236.3
Q ss_pred CCccccCCCCCCceEEecCCC-C-CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcE
Q 038499 65 KNAEFDSPFGKRRLTYADHTA-S-GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAM 142 (609)
Q Consensus 65 ~~~~~~~p~g~~~~vyld~~a-~-g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~v 142 (609)
.+..+..+.|+ .++++..+. . -+.++.|.+++.+.+..+ +.... .+....+......++++++++++|.+. .+
T Consensus 49 ~~~~~~~~~g~-~~ld~~s~~~l~~~~~p~v~~a~~~~l~~~-~~~~~-~~~~~~g~~~~~~~l~~~la~~~g~~~--~i 123 (409)
T 3kki_A 49 KHLVLGKQASP-DDIILQSNDYLALANHPLIKARLAKSLLEE-QQSLF-MSASFLQNDYDKPMIEKRLAKFTGFDE--CL 123 (409)
T ss_dssp SCTTCCCCCCT-TSEECCCSCTTCCTTCHHHHHHHHHHHHSC-CCCCC-SBGGGGCSTTTSCHHHHHHHHHHTCSE--EE
T ss_pred CeeeeCCCCCC-ceEEeeccCccCCcCCHHHHHHHHHHHHHc-CCCCC-ccccccCCcHHHHHHHHHHHHHhCCCe--EE
Confidence 33455556664 344443221 1 124678999998888653 22111 122222334556789999999999863 45
Q ss_pred EEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHH
Q 038499 143 IFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALR 222 (609)
Q Consensus 143 ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~ 222 (609)
++ ++|+ +++..++.++ +++|| .|+++.+.|+++...++..|++++.++. .|+++|+
T Consensus 124 ~~-~sGt-~a~~~~l~~~---------------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~le 179 (409)
T 3kki_A 124 LS-QSGW-NANVGLLQTI---------------CQPNT--NVYIDFFAHMSLWEGARYANAQAHPFMH-----NNCDHLR 179 (409)
T ss_dssp EE-SCHH-HHHHHHHHHH---------------CCTTC--EEEEETTSCHHHHHHHHHTTCEEEEECT-----TCHHHHH
T ss_pred Ee-cchH-HHHHHHHHHh---------------cCCCC--EEEECCCcCHHHHHHHHHcCCeEEEecC-----CCHHHHH
Confidence 55 4887 4566565555 37888 7999999999999999999999998875 5899999
Q ss_pred HHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCC----CC-CCCccEEEEcCC
Q 038499 223 SKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRS----GQ-TDGYDAIFLSTH 297 (609)
Q Consensus 223 ~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~----~~-~~~~D~v~~S~h 297 (609)
+++++ .+++++++++++||||.+.|+++|.++|++||+++|+|++++.+.....-.. .. ..++|+++.|+|
T Consensus 180 ~~l~~----~~~~~vi~~~~~nptG~~~~l~~l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~s 255 (409)
T 3kki_A 180 MLIQR----HGPGIIVVDSIYSTLGTIAPLAELVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLA 255 (409)
T ss_dssp HHHHH----HCSCEEEEESBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESS
T ss_pred HHHHh----cCCeEEEECCCCCCCCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecc
Confidence 99985 3579999999999999999999999999999999999999976543111000 00 125789999999
Q ss_pred CCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC-CChhHHHHHHHHHHHHHHHhcC
Q 038499 298 KFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG-GTPQVIQMIRAALAFWVKEYIG 376 (609)
Q Consensus 298 K~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~-gtp~i~~~~~aal~~~~~~~~g 376 (609)
|+++++ | |+++.++++ ++.+..... ...+.. ..+.....+.+++... +..
T Consensus 256 K~~~~~-g-g~v~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~~~aa~~aal~~~--~~~- 306 (409)
T 3kki_A 256 KTFAYR-A-GAIWCNNEV--NRCVPFISY----------------------PAIFSSTLLPYEAAGLETTLEII--ESA- 306 (409)
T ss_dssp STTCSS-C-EEEEESSSG--GGTHHHHCH----------------------HHHHSBCCCHHHHHHHHHHHHHH--HHC-
T ss_pred hhhCCC-c-eEEEECHHH--HHHHHHhCc----------------------CccccCCCcHHHHHHHHHHHHHH--hcC-
Confidence 999866 3 999999887 333211000 000111 1222222233444433 222
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcE
Q 038499 377 HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQ 456 (609)
Q Consensus 377 ~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~ 456 (609)
+.++++.+++++++.+.|+++ ++++.+ ..+++++.+.. . .....+.+.|.++ ||.
T Consensus 307 -~~~~~~~~~~~~~l~~~L~~~-g~~~~~-----~~~~~~~~~~~-~----------------~~~~~~~~~L~~~-Gv~ 361 (409)
T 3kki_A 307 -DNRRQHLDRMARKLRIGLSQL-GLTIRS-----ESQIIGLETGD-E----------------RNTEKVRDYLESN-GVF 361 (409)
T ss_dssp -HHHHHHHHHHHHHHHHHHHTT-TCCCCC-----SSSEEEEEEES-H----------------HHHHHHHHHHHHT-TEE
T ss_pred -HHHHHHHHHHHHHHHHHHHHc-CCccCC-----CCCEEEEEeCC-H----------------HHHHHHHHHHHHC-Cce
Confidence 567788889999999999887 666542 34566665543 1 1355788888775 999
Q ss_pred eccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 457 ARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 457 v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++++.+..+. .++++||+++.++|++|+++++++|+++++.
T Consensus 362 v~~~~~~~~~~--------------------------~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~~ 403 (409)
T 3kki_A 362 GSVFCRPATSK--------------------------NKNIIRLSLNSDVNDEQIAKIIEVCSDAVNY 403 (409)
T ss_dssp CEEECTTSSCT--------------------------TCEEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred EeeeCCCCcCC--------------------------CCcEEEEEccCCCCHHHHHHHHHHHHHHHhc
Confidence 98755433221 2589999999999999999999999999875
|
| >1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-26 Score=245.95 Aligned_cols=333 Identities=14% Similarity=0.045 Sum_probs=230.4
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
++.++.+... +.++.+.+++.+.+.. .+. |... ....++++.++++++++++ +|++| +|+++++..+
T Consensus 27 ~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~----y~~~----~~~~~l~~~la~~~~~~~~-~v~~~-~g~~~a~~~~ 94 (381)
T 1v2d_A 27 AVNLGQGFPSNPPPPFLLEAVRRALGR--QDQ----YAPP----AGLPALREALAEEFAVEPE-SVVVT-SGATEALYVL 94 (381)
T ss_dssp CEECCCCSCSSCCCHHHHHHHHHHTTT--SCS----CCCT----TCCHHHHHHHHHHHTSCGG-GEEEE-SSHHHHHHHH
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHH--hcC----CCCC----CCCHHHHHHHHHhcCCChh-hEEEc-CChHHHHHHH
Confidence 3444443322 3567888998887754 111 1111 1246789999999999876 79998 6777788888
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC---CCCCCCHHHHHHHHhhhccCCC
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD---DDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~---~~g~ld~e~L~~al~~~~~~~~ 233 (609)
+..+ +++|| .|+++.+.|+++...++..|++++.++.+ +++.+|+++|+++++ ++
T Consensus 95 ~~~~---------------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~-----~~ 152 (381)
T 1v2d_A 95 LQSL---------------VGPGD--EVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT-----PR 152 (381)
T ss_dssp HHHH---------------CCTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC-----TT
T ss_pred HHHh---------------CCCCC--EEEEcCCCchhHHHHHHHcCCEEEEEeCCCCCccCCcCHHHHHHhcC-----cC
Confidence 8776 36788 69999999999998888899999999987 457799999999987 57
Q ss_pred ceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc---cccCCCCCCCCccEEEEcCCCCCCCCC-Cc
Q 038499 234 PILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---EIDVRSGQTDGYDAIFLSTHKFLGGPG-SP 306 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~id~~~~~~~~~D~v~~S~hK~lggp~-g~ 306 (609)
++++++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+ ..+.|+++.|+||++|.|+ .+
T Consensus 153 ~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~g~~~~~~~~~-~~~~~~~~~s~sK~~~~~G~r~ 231 (381)
T 1v2d_A 153 TRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREF-APERTFTVGSAGKRLEATGYRV 231 (381)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHH-CTTTEEEEEEHHHHTTCGGGCC
T ss_pred CEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCCCHHHh-cCCCEEEEeechhhcCCcccce
Confidence 999999999999999987 78899999999999999999875421 2222211 1367999999999997442 38
Q ss_pred EEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHH
Q 038499 307 GILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQE 384 (609)
Q Consensus 307 G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~ 384 (609)
|++++++++ ++.+... ......+++.... +.+++... ....+.+.+.++.
T Consensus 232 G~~~~~~~~--~~~~~~~-------------------------~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~ 283 (381)
T 1v2d_A 232 GWIVGPKEF--MPRLAGM-------------------------RQWTSFSAPTPLQAGVAEALKLA-RREGFYEALREGY 283 (381)
T ss_dssp EEEECCTTT--HHHHHHH-------------------------HHHHTSSCCHHHHHHHHHHHHHH-HHTTHHHHHHHHH
T ss_pred EEEEeCHHH--HHHHHHH-------------------------HhhcccCCCcHHHHHHHHHHhCc-ccHHHHHHHHHHH
Confidence 999998877 2222110 0011122222222 12222211 0134567788889
Q ss_pred HHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 385 ETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 385 ~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
+++++++.+.|++. ++++..+ ..+++.+...+ . . + +.+.| +++||.+++|..|.
T Consensus 284 ~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-~----------------~--~-~~~~l-~~~gi~v~~g~~~~ 337 (381)
T 1v2d_A 284 RRRRDLLAGGLRAM-GLRVYVP----EGTYFLMAELP-G----------------W--D-AFRLV-EEARVALIPASAFY 337 (381)
T ss_dssp HHHHHHHHHHHHHT-TCCEECC----SBSSEEEEECT-T----------------C--C-HHHHH-HHTCEECEEGGGGC
T ss_pred HHHHHHHHHHHHHC-CCEecCC----CcceEEEEecC-h----------------H--h-HHHHH-HhCCEEEecchHhC
Confidence 99999999999875 7888765 22444443333 1 1 2 55555 45799999887765
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
... . .++++||+++. +++++++++++|+.+++..+
T Consensus 338 ~~~-~------------------------~~~~iRi~~~~--~~~~i~~~~~~l~~~l~~~r 372 (381)
T 1v2d_A 338 LED-P------------------------PKDLFRFAFCK--TEEELHLALERLGRVVNSPR 372 (381)
T ss_dssp SSS-C------------------------CTTEEEEECCS--CHHHHHHHHHHHHHHC----
T ss_pred CCC-C------------------------CCCEEEEEeCC--CHHHHHHHHHHHHHHHhhcc
Confidence 210 0 25899999986 99999999999998876543
|
| >1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=245.06 Aligned_cols=344 Identities=11% Similarity=0.015 Sum_probs=232.4
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal 153 (609)
.+++++.+..+ +.++.+.+++.+.+... .. .|..+ ..++++.+.+++++.+| .+++ +|++| +|+++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~--~~~l~~~la~~l~~~~g~~~~~~-~v~~t-~g~~~a~ 102 (399)
T 1c7n_A 32 EVVPLSVADMEFKNPPELIEGLKKYLDET----VL-GYTGP--TEEYKKTVKKWMKDRHQWDIQTD-WIINT-AGVVPAV 102 (399)
T ss_dssp TCCCCCSSSCSSCCCHHHHHHHHHHHHHC----CC-SSBCC--CHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SSHHHHH
T ss_pred CceeeeecCCCCCCCHHHHHHHHHHHhcC----CC-CCCCC--cHHHHHHHHHHHHHHhCCCCChh-hEEEc-CCHHHHH
Confidence 45555554442 35678888888776421 11 11111 23444455555555567 5555 89998 7888889
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC-CCC--CCCHHHHHHHHhhhcc
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD-DDG--LLDIEALRSKLELYKD 230 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~g--~ld~e~L~~al~~~~~ 230 (609)
..++.++ +++|| .|++..+.|+++...++..|++++.++.+ ++| .+|+++|++++++
T Consensus 103 ~~~~~~l---------------~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~--- 162 (399)
T 1c7n_A 103 FNAVREF---------------TKPGD--GVIIITPVYYPFFMAIKNQERKIIECELLEKDGYYTIDFQKLEKLSKD--- 162 (399)
T ss_dssp HHHHHHH---------------CCTTC--EEEECSSCCTHHHHHHHTTTCEEEECCCEEETTEEECCHHHHHHHHTC---
T ss_pred HHHHHHh---------------cCCCC--EEEEcCCCcHhHHHHHHHcCCEEEecccccCCCCEEEcHHHHHHHhcc---
Confidence 9888876 36788 69999999999998888899999999886 333 5899999999974
Q ss_pred CCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCC--CCccEEEEcCCCCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQT--DGYDAIFLSTHKFLG 301 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~--~~~D~v~~S~hK~lg 301 (609)
++++++++++++||||.+.| +++|+++|++||+++|+|++++... ...++..+.. .+.++++.|+||++|
T Consensus 163 -~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~ 241 (399)
T 1c7n_A 163 -KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFN 241 (399)
T ss_dssp -TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHT
T ss_pred -CCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeChhhcc
Confidence 47899999999999999999 8999999999999999999987632 1223332211 144688899999997
Q ss_pred CCC-CcEEEEEec-hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHH
Q 038499 302 GPG-SPGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEV 379 (609)
Q Consensus 302 gp~-g~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~ 379 (609)
.|+ .+|++++++ ++ ++.+.+. ......++++......+...+. ......+.
T Consensus 242 ~~G~r~G~~~~~~~~~--~~~l~~~------------------------~~~~~~~~~~~~~~~a~~~~l~-~~~~~~~~ 294 (399)
T 1c7n_A 242 IAGMGMSNIIIKNPDI--RERFTKS------------------------RDATSGMPFTTLGYKACEICYK-ECGKWLDG 294 (399)
T ss_dssp CGGGCCEEEECCCHHH--HHHHHHH------------------------HHHTTCCCCCHHHHHHHHHHHH-HCHHHHHH
T ss_pred ccchheEEEEECCHHH--HHHHHHH------------------------HhhcccCCCCHHHHHHHHHHHh-CChHHHHH
Confidence 443 479999974 45 2222111 0111122333333222221221 11224567
Q ss_pred HHHHHHHHHHHHHHHhCC-CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEec
Q 038499 380 IKKQEETYIERALERLLP-NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQAR 458 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~-~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~ 458 (609)
+.++.+++++++.+.|++ +|++++..+ ..+++.+...+ .. ..+...+.+.|.+++||.++
T Consensus 295 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~-~~--------------~~~~~~~~~~l~~~~gi~v~ 355 (399)
T 1c7n_A 295 CIKVIDKNQRIVKDFFEVNHPEIKAPLI----EGTYLQWIDFR-AL--------------KMDHKAMEEFMIHKAQIFFD 355 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTSBCCCC----SBSSEEEEECG-GG--------------CCCHHHHHHHHHHTTCCCCE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCeEecC----CceEEEEEEcc-cC--------------CCCHHHHHHHHHHhCCEEEe
Confidence 777888889999999987 788877644 34555443333 10 03567888888655799999
Q ss_pred cCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 459 GGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 459 ~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+|..|... .++++||+++. ++++++.+++.|+++++..
T Consensus 356 ~g~~~~~~---------------------------~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~ 393 (399)
T 1c7n_A 356 EGYIFGDG---------------------------GIGFERINLAA--PSSVIQESLERLNKALKDL 393 (399)
T ss_dssp EGGGGCGG---------------------------GTTEEEEECCS--CHHHHHHHHHHHHHHHHHH
T ss_pred CccccCCC---------------------------CCCeEEEEecc--CHHHHHHHHHHHHHHHHHH
Confidence 88776511 15899999985 4789999999999887654
|
| >1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-26 Score=243.52 Aligned_cols=338 Identities=16% Similarity=0.056 Sum_probs=225.9
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal 153 (609)
.++.|+.+... +.++.+.+++.+.+.... . .|....+..++++.+.+++.+..|. +++ +|++| +|+++++
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~g~~~al 104 (385)
T 1b5p_A 32 DLVALTAGEPDFDTPEHVKEAARRALAQGK----T-KYAPPAGIPELREALAEKFRRENGLSVTPE-ETIVT-VGGSQAL 104 (385)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHTTC----C-SCCCTTCCHHHHHHHHHHHHHTTCCCCCGG-GEEEE-SHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCCCHHHHHHHHHHHHHHhCCCCChH-HEEEc-CChHHHH
Confidence 35566555432 345778888877664311 1 1111112234444444444444454 444 89998 8888899
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~ 231 (609)
..++..+ +++|| .|+++.++|+.+...++..|++++.+++++ ++.+|+++|+++++
T Consensus 105 ~~~~~~l---------------~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~----- 162 (385)
T 1b5p_A 105 FNLFQAI---------------LDPGD--EVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT----- 162 (385)
T ss_dssp HHHHHHH---------------CCTTC--EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC-----
T ss_pred HHHHHHh---------------cCCCC--EEEEcCCCchhHHHHHHHcCCEEEEeecCcccCCCCCHHHHHHhcC-----
Confidence 9998876 37888 699999999999888999999999999975 45789999999997
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc---cccCCCCCCCCccEEEEcCCCCCCCCC-
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---EIDVRSGQTDGYDAIFLSTHKFLGGPG- 304 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~id~~~~~~~~~D~v~~S~hK~lggp~- 304 (609)
++++++++++++||||.+.+ +++|+++|++||+++|+|++++.... ..++..+.. +.++++.|+||++|.|+
T Consensus 163 ~~~~~v~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~i~~~s~SK~~~~~G~ 241 (385)
T 1b5p_A 163 PRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAP-EHTLTVNGAAKAFAMTGW 241 (385)
T ss_dssp TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCT-TTEEEEEESTTTTTCGGG
T ss_pred CCCEEEEEeCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCHHHcCC-CCEEEEEechhhcCCccc
Confidence 57899999999999999977 78899999999999999999775322 122222211 45788999999998442
Q ss_pred CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHHHHhcCHHHHHHH
Q 038499 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKEYIGHEVIKKQ 383 (609)
Q Consensus 305 g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~~~g~~~i~~~ 383 (609)
++|++++++++ ++.+.+. ......+.+.+.+.+ .+++..........+.+.++
T Consensus 242 RiG~~~~~~~~--~~~l~~~------------------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~ 295 (385)
T 1b5p_A 242 RIGYACGPKEV--IKAMASV------------------------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREA 295 (385)
T ss_dssp CCEEEECCHHH--HHHHHHH------------------------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCHHH--HHHHHHH------------------------HhhccCCCCHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 38999998877 2222111 000111233333322 12221100011235667778
Q ss_pred HHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCccc
Q 038499 384 EETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
.++.++++.+.|+++ ++++..+ ..+++.+...+ .. ..+..++.+.|. +.||.+++|..|
T Consensus 296 ~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-~~--------------~~~~~~l~~~l~-~~gv~v~~g~~f 354 (385)
T 1b5p_A 296 YRRRRDLLLEGLTAL-GLKAVRP----SGAFYVLMDTS-PI--------------APDEVRAAERLL-EAGVAVVPGTDF 354 (385)
T ss_dssp HHHHHHHHHHHHHHH-TCCBCCC----SBTTEEEEECT-TT--------------CSSHHHHHHHHH-HTTEECEESGGG
T ss_pred HHHHHHHHHHHHHHC-CCeecCC----CeeEEEEEecC-CC--------------CCCHHHHHHHHH-HCCeEEeccccc
Confidence 888888888888876 7776654 23444443332 10 145778888887 579999988766
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.. ++++|||++ +++++++.+++.|++++
T Consensus 355 ~~-----------------------------~~~iRis~~--~~~~~i~~~l~~l~~~l 382 (385)
T 1b5p_A 355 AA-----------------------------FGHVRLSYA--TSEENLRKALERFARVL 382 (385)
T ss_dssp TC-----------------------------TTEEEEECC--SCHHHHHHHHHHGGGGC
T ss_pred CC-----------------------------CCeEEEEec--CCHHHHHHHHHHHHHHH
Confidence 41 379999997 78999999888887654
|
| >1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=5.8e-26 Score=240.75 Aligned_cols=333 Identities=14% Similarity=0.056 Sum_probs=230.7
Q ss_pred eEEecCCCCC----CChHHHHHHHHHhhcCC-ccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 78 LTYADHTASG----RSLRYIENYIINNVLPF-YGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 78 ~vyld~~a~g----~~~~~v~~ai~~~~~~~-~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
..|+|.+++. +.++.+.+++.+.+... .+++.. ...........++++.+++++|.+ +.+++++|+ ++
T Consensus 39 ~~~id~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~---~~~~g~~~~~~~l~~~la~~~g~~---~~i~~~sGt-~a 111 (384)
T 1bs0_A 39 RQYLNFSSNDYLGLSHHPQIIRAWQQGAEQFGIGSGGS---GHVSGYSVVHQALEEELAEWLGYS---RALLFISGF-AA 111 (384)
T ss_dssp EEEEECSCCCTTSGGGCHHHHHHHHHHHHHHCSCCCSB---TTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHH-HH
T ss_pred ceEEEeeccCccCCCCCHHHHHHHHHHHHHhCCCCCCc---CcccCChHHHHHHHHHHHHHhCCC---cEEEeCCcH-HH
Confidence 4577877643 35678999988877542 111111 111112356788999999999985 345555885 56
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
+..++.++ +++|| .|+++.+.|+++...++..|++++.++. .|+++|++++++.. +
T Consensus 112 ~~~~~~~~---------------~~~gd--~v~~~~~~~~~~~~~~~~~g~~~~~~~~-----~d~~~l~~~l~~~~--~ 167 (384)
T 1bs0_A 112 NQAVIAAM---------------MAKED--RIAADRLSHASLLEAASLSPSQLRRFAH-----NDVTHLARLLASPC--P 167 (384)
T ss_dssp HHHHHHHH---------------CCTTC--EEEEETTCCHHHHHHHHTSSSEEEEECT-----TCHHHHHHHHHSCC--S
T ss_pred HHHHHHHh---------------CCCCc--EEEEcccccHHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHhcC--C
Confidence 76666665 36888 7999999999999999999999999984 48999999997421 1
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc---ccC-CCCCCCCccEEEEcCCCCCCCCCCcEE
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE---IDV-RSGQTDGYDAIFLSTHKFLGGPGSPGI 308 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~---id~-~~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (609)
+++++++++++||||.+.|+++|.++|++||+++|+|++++.+... ..+ .... .+.|+++.|+||++| |.| |+
T Consensus 168 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~-~~~di~~~s~sK~~~-~~G-G~ 244 (384)
T 1bs0_A 168 GQQMVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQK-VKPELLVVTFGKGFG-VSG-AA 244 (384)
T ss_dssp SCEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTT-CCCSEEEEESSSTTS-SCC-EE
T ss_pred CCeEEEEeCCCCCCCCccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcC-CCCcEEEeeccchhh-ccC-cE
Confidence 4789999999999999999999999999999999999998765421 111 1111 257999999999998 666 99
Q ss_pred EEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc-CCChhHHH--HHHHHHHHHHHHhcCHHHHHHHHH
Q 038499 309 LLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES-GGTPQVIQ--MIRAALAFWVKEYIGHEVIKKQEE 385 (609)
Q Consensus 309 L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~-~gtp~i~~--~~~aal~~~~~~~~g~~~i~~~~~ 385 (609)
+++++++ ++.+... ...+. .++++... .+.+++... +..+.+.+.++.+
T Consensus 245 ~~~~~~~--~~~l~~~------------------------~~~~~~~~~~~~~~~~~~~~al~~~--~~~~~~~~~~~~~ 296 (384)
T 1bs0_A 245 VLCSSTV--ADYLLQF------------------------ARHLIYSTSMPPAQAQALRASLAVI--RSDEGDARREKLA 296 (384)
T ss_dssp EEECHHH--HHHHHHH------------------------CHHHHSSBCCCHHHHHHHHHHHHHH--HSHHHHHHHHHHH
T ss_pred EEeCHHH--HHHHHHh------------------------chhhhcCCCCCHHHHHHHHHHHHHH--hccccHHHHHHHH
Confidence 9999887 2222110 00011 11223222 223344432 1113467788889
Q ss_pred HHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC
Q 038499 386 TYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG 465 (609)
Q Consensus 386 ~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~ 465 (609)
++++++.+.|+++ ++++..+ ..+++++.+.. . .+...+.+.|.++ ||.+++|..+..
T Consensus 297 ~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-~----------------~~~~~l~~~l~~~-gi~v~~~~~~~~ 353 (384)
T 1bs0_A 297 ALITRFRAGVQDL-PFTLADS----CSAIQPLIVGD-N----------------SRALQLAEKLRQQ-GCWVTAIRPPTV 353 (384)
T ss_dssp HHHHHHHHHHTTS-SCEECSC----CSSBCCEEEES-H----------------HHHHHHHHHHHHT-TEECCEECTTSS
T ss_pred HHHHHHHHHHHhc-CCcccCC----CCCEEEEEeCC-H----------------HHHHHHHHHHHHC-CcEEEeecCCCC
Confidence 9999999999987 7877632 33455554432 1 2466788888765 999997764321
Q ss_pred hhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 466 PYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 466 p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+. ..+++||+++.+++++|+++++++|+++
T Consensus 354 ~~--------------------------~~~~~Ri~~~~~~~~~~i~~~~~~l~~~ 383 (384)
T 1bs0_A 354 PA--------------------------GTARLRLTLTAAHEMQDIDRLLEVLHGN 383 (384)
T ss_dssp CT--------------------------TCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred CC--------------------------CCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence 10 1479999999999999999999999875
|
| >1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-26 Score=243.06 Aligned_cols=341 Identities=12% Similarity=0.029 Sum_probs=230.1
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC-CCC-cEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG-QED-AMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~-~~~-~vift~sGttaal 153 (609)
.+++|+.+... +.++.+.+++.+.+... .. .|....+..++.+.+.+++++.+|.+ ..+ +|++| +|+++++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~-~g~~~a~ 104 (386)
T 1u08_A 31 QAINLSQGFPDFDGPRYLQERLAHHVAQG----AN-QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVT-AGATEAL 104 (386)
T ss_dssp TCEECCCSSCSSCCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEE-SSHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHHhh----cc-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEc-CChHHHH
Confidence 35677666543 35678888888877531 00 11111123445555555555556754 234 79998 7788889
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~ 232 (609)
..++.++ +++|| .|++..+.|+++...++..|++++.++.+. ++.+|+++|+++++ +
T Consensus 105 ~~~~~~~---------------~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-----~ 162 (386)
T 1u08_A 105 YAAITAL---------------VRNGD--EVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS-----E 162 (386)
T ss_dssp HHHHHHH---------------CCTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC-----T
T ss_pred HHHHHHh---------------CCCCC--EEEEeCCCchhHHHHHHHcCCEEEEeecCcccCcCCHHHHHHhhc-----c
Confidence 8888876 36788 699999999999888899999999999876 57799999999997 5
Q ss_pred CceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCC-CCCccEEEEcCCCCCCCCC
Q 038499 233 RPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQ-TDGYDAIFLSTHKFLGGPG 304 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~-~~~~D~v~~S~hK~lggp~ 304 (609)
+++++++++++||||.+.| +++|+++|++||+++|+|++++... ....+..+. ..+.|+++.|+||++|.|+
T Consensus 163 ~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G 242 (386)
T 1u08_A 163 RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTG 242 (386)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGG
T ss_pred cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecchhhcCCcc
Confidence 8999999999999999986 5889999999999999999987522 111222110 1257999999999998332
Q ss_pred -CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHHHHHH
Q 038499 305 -SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHEVIKK 382 (609)
Q Consensus 305 -g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~~i~~ 382 (609)
.+|++++++++ ++.+.+. ......+.+.+.+. ++.+. ++. ..+.+.+.+
T Consensus 243 ~r~G~~~~~~~~--~~~l~~~------------------------~~~~~~~~~~~~~~--a~~~~-l~~~~~~~~~~~~ 293 (386)
T 1u08_A 243 WKVGYCVAPAPI--SAEIRKV------------------------HQYLTFSVNTPAQL--ALADM-LRAEPEHYLALPD 293 (386)
T ss_dssp GCCEEEECCHHH--HHHHHHH------------------------HHHHTSSCCHHHHH--HHHHH-HHHCTHHHHTHHH
T ss_pred cceEEEEcCHHH--HHHHHHH------------------------HHhhccCCChHHHH--HHHHH-HhCCcHHHHHHHH
Confidence 38999999887 2222111 00001122222221 11121 222 234567788
Q ss_pred HHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcc
Q 038499 383 QEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCA 462 (609)
Q Consensus 383 ~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ 462 (609)
+.+++++++.+.|+++ ++++..+. ...++++.+.. . ...+...+.+.|.++.||.+++|..
T Consensus 294 ~~~~~~~~l~~~L~~~-g~~~~~~~---~g~~~~~~~~~-~--------------~~~~~~~~~~~l~~~~gi~v~~g~~ 354 (386)
T 1u08_A 294 FYRQKRDILVNALNES-RLEILPCE---GTYFLLVDYSA-V--------------STLDDVEFCQWLTQEHGVAAIPLSV 354 (386)
T ss_dssp HHHHHHHHHHHHTTSS-SCEECCCC---BSSEEEEECTT-T--------------CCSCHHHHHHHHHHHSCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHC-CCeecCCC---ceEEEEEecCC-C--------------CCCCHHHHHHHHHHhCCEEEeCchH
Confidence 8889999999999987 88877542 22334443332 1 0024678888776667999998865
Q ss_pred cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 463 CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 463 ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
|.... . .++++||+++ +++++++.++++|++
T Consensus 355 f~~~~-~------------------------~~~~iRis~~--~~~~~i~~~~~~l~~ 385 (386)
T 1u08_A 355 FCADP-F------------------------PHKLIRLCFA--KKESTLLAAAERLRQ 385 (386)
T ss_dssp GCSSC-C------------------------CSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred hCCCC-C------------------------CCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence 54210 0 2589999997 489999999998853
|
| >2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=244.50 Aligned_cols=347 Identities=11% Similarity=0.044 Sum_probs=230.1
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----CC--CCCCcEEEeCChH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----GG--GQEDAMIFCGSGT 149 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g~--~~~~~vift~sGt 149 (609)
.++.|+.+... +.++.+.+++.+.+... ..+ .|... ....++++.+++++ |. +++++|++| +|+
T Consensus 38 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~--~~~--~y~~~----~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t-~g~ 108 (412)
T 2x5d_A 38 DIIDLSMGNPDGPTPPHIVEKLCTVAQRE--DTH--GYSTS----RGIPRLRRAISHWYRDRYDVQIDPESEAIVT-IGS 108 (412)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHTC-------------CT----TCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE-SCH
T ss_pred CEEecCCCCCCCCCCHHHHHHHHHHHhCC--CCC--CCCCC----CCcHHHHHHHHHHHHHHhCCCCCCCcCEEEc-CCh
Confidence 35555544432 25678888888776432 011 01111 11345566666666 85 341389998 778
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC-C-CCCHHHHHHHHhh
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD-G-LLDIEALRSKLEL 227 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-g-~ld~e~L~~al~~ 227 (609)
++++..++..+ +++|| .|++..+.|+++...++..|++++.++.+++ + .+|+++|+++++
T Consensus 109 ~~a~~~~~~~~---------------~~~gd--~Vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~- 170 (412)
T 2x5d_A 109 KEGLAHLMLAT---------------LDHGD--TILVPNPSYPIHIYGAVIAGAQVRSVPLVPGIDFFNELERAIRESI- 170 (412)
T ss_dssp HHHHHHHHHHH---------------CCTTC--EEEEEESCCHHHHHHHHHHTCEEEEEECSTTSCHHHHHHHHHHTEE-
T ss_pred HHHHHHHHHHh---------------CCCCC--EEEEcCCCchhHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHhcc-
Confidence 88899888876 36888 6999999999999889999999999998864 3 378899999987
Q ss_pred hccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCCCC-CCccEEEEcCCCC
Q 038499 228 YKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQT-DGYDAIFLSTHKF 299 (609)
Q Consensus 228 ~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~-~~~D~v~~S~hK~ 299 (609)
++++++++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+.. .+.|+++.|+||+
T Consensus 171 ----~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~ 246 (412)
T 2x5d_A 171 ----PKPRMMILGFPSNPTAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKS 246 (412)
T ss_dssp ----SCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-C
T ss_pred ----cCceEEEECCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCccc
Confidence 57899999999999999987 57899999999999999999886432 223322211 2568999999999
Q ss_pred CCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCH
Q 038499 300 LGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGH 377 (609)
Q Consensus 300 lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~ 377 (609)
+|.|+ ++|++++++++ ++.+... ......+.+...... +.+++ .. ....
T Consensus 247 ~~~~G~r~G~~~~~~~~--~~~l~~~-------------------------~~~~~~~~~~~~~~a-~~~~l-~~~~~~~ 297 (412)
T 2x5d_A 247 YNMAGWRIGFMVGNPEL--VSALARI-------------------------KSYHDYGTFTPLQVA-AIAAL-EGDQQCV 297 (412)
T ss_dssp CSCTTSCCEEEEECHHH--HHHHHHH-------------------------HHHHCCCCCHHHHHH-HHHHH-HSCSHHH
T ss_pred cCCcccceEEEEcCHHH--HHHHHHH-------------------------HhhhccCCCHHHHHH-HHHHH-hCCHHHH
Confidence 97443 48999998887 2222110 000012223222222 22222 11 1235
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCC---ChHHHHHHHhhhcC
Q 038499 378 EVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPL---HGPFVATLLNDLFG 454 (609)
Q Consensus 378 ~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l---~~~~v~~~L~~~~G 454 (609)
+.+.++.+++++++.+.|+++ ++++..+ ..+++.+...+ .. + +...+++.|.+++|
T Consensus 298 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~-~~---------------~~~~~~~~~~~~l~~~~g 356 (412)
T 2x5d_A 298 RDIARQYQQRRDVLVKGLREA-GWMVENP----KASMYVWAKIP-EP---------------YAHLGSLEFAKKLLQDAK 356 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-TCCCCCC----SBSSEEEEECC-TT---------------TGGGCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHC-CCEecCC----CeeeEEEEEcC-Cc---------------cCCCCHHHHHHHHHHHCC
Confidence 677788888899999988876 6666543 34544444333 11 2 46778888866679
Q ss_pred cEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccCCCc
Q 038499 455 IQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYN 533 (609)
Q Consensus 455 I~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~p~y~ 533 (609)
|.+++|..|... .++++||+++. ++++++.+++.|+++++......+.-.
T Consensus 357 i~v~~g~~f~~~---------------------------~~~~iRis~~~--~~~~l~~~l~~l~~~l~~~~~~~~~~~ 406 (412)
T 2x5d_A 357 VSVSPGIGFGDY---------------------------GDDHVRFALIE--NRDRLRQAVRGIKAMFRADGLLSPQRK 406 (412)
T ss_dssp EECEEGGGGCGG---------------------------GTTEEEEECCS--CHHHHHHHHHHHHHHHHHTTCC-----
T ss_pred EEEeCchhhCCC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHhcCCcChHHH
Confidence 999988777421 14899999985 899999999999999987665554433
|
| >3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.7e-26 Score=246.90 Aligned_cols=331 Identities=15% Similarity=0.119 Sum_probs=233.7
Q ss_pred CCChHHHHHHHHHhhcCC-ccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 87 GRSLRYIENYIINNVLPF-YGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~-~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
.+.++.|.+++.+.+... ++.+ ....++.+++++++++.+| .+++ +|+|+ +|+++++..++..+
T Consensus 73 ~~~~~~v~~a~~~~~~~~~~~y~--------~~~~~l~~~l~~~l~~~~g~~~~~~-~v~~~-~g~~ea~~~a~~~~--- 139 (421)
T 3l8a_A 73 FLPVPEIKEAIINYGREHIFGYN--------YFNDDLYQAVIDWERKEHDYAVVKE-DILFI-DGVVPAISIALQAF--- 139 (421)
T ss_dssp SCCCHHHHHHHHHHHHHCCSSCB--------CCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SCHHHHHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHhcCCcCCC--------CCCHHHHHHHHHHHHHHhCCCCCHH-HEEEc-CCHHHHHHHHHHHh---
Confidence 356788999998877531 1111 1125678889999999998 5555 89998 78888898888876
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC-CC--CCCCHHHHHHHHhhhccCCCceEEEEe
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD-DD--GLLDIEALRSKLELYKDAKRPILGSFS 240 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~--g~ld~e~L~~al~~~~~~~~~~lv~~s 240 (609)
+++|| .|++..+.|+++...++..|++++.++++ .+ +.+|+++|++++++ +++++++++
T Consensus 140 ------------~~~gd--~Vi~~~~~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~----~~~~~vil~ 201 (421)
T 3l8a_A 140 ------------SEKGD--AVLINSPVYYPFARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIID----NNVKIYLLC 201 (421)
T ss_dssp ------------SCTEE--EEEEEESCCHHHHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHH----TTEEEEEEE
T ss_pred ------------cCCCC--EEEECCCCcHHHHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhc----cCCeEEEEC
Confidence 36777 68999999999998999999999999986 33 36899999999985 579999999
Q ss_pred cccCccccc---cCHHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCC--CCccEEEEcCCCCCCCC-CCcEEEE
Q 038499 241 ACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQT--DGYDAIFLSTHKFLGGP-GSPGILL 310 (609)
Q Consensus 241 ~~sn~TG~~---~dl~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~--~~~D~v~~S~hK~lggp-~g~G~L~ 310 (609)
+++||||.+ .++++|.++|++||+++|+|++++... ....+..+.. .+.++++.|++|++|.+ .++|+++
T Consensus 202 ~p~nptG~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~~~G~~~ 281 (421)
T 3l8a_A 202 SPHNPGGRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGTKNSFAI 281 (421)
T ss_dssp SSBTTTTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGGCCEEEE
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchhheEeEE
Confidence 999999998 568889999999999999999987532 1222222211 24568889999999733 3579999
Q ss_pred Ee-chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 038499 311 MT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIE 389 (609)
Q Consensus 311 ~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (609)
++ +++. +.+.+. ......++++.++...+..++. ......+.+.++.+++++
T Consensus 282 ~~~~~l~--~~~~~~------------------------~~~~~~~~~n~~~~~a~~aal~-~~~~~~~~~~~~~~~~~~ 334 (421)
T 3l8a_A 282 IQNESLR--RKFQYR------------------------QLANNQHEVPTVGMIATQAAFQ-YGKPWLEELKTVIEGNIK 334 (421)
T ss_dssp CCSHHHH--HHHHHH------------------------HHHTTCSCCCHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHH
T ss_pred cCCHHHH--HHHHHH------------------------HHhcccCCCCHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHH
Confidence 98 5652 222111 1111223444444332222222 112235677888888899
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
++.+.|+++|++.+..+. .+++.+...+ .. ..+...+.+.|.+++||.+++|..|...
T Consensus 335 ~l~~~L~~~~~i~~~~~~----~~~~~~v~~~-~~--------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~--- 392 (421)
T 3l8a_A 335 LVIKELEAKTKIKVMEPE----GTYLVWLDFS-AY--------------AIAQPQLSEKLQNEAKVVLNDGAHFGKE--- 392 (421)
T ss_dssp HHHHHHHHHCSCEEECCS----BSSEEEEECG-GG--------------TCCTTHHHHHHHHTTCEECEEGGGGCGG---
T ss_pred HHHHHHHhCCCceEeCCC----eeEEEEEecc-cc--------------CCCHHHHHHHHHHhCCEEEECchhhCCC---
Confidence 999999877889888652 3444433333 10 1356688888876679999998877521
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++++||+++ +++++++.++++|+++++
T Consensus 393 ------------------------~~~~iRi~~~--~~~~~i~~~l~~l~~~l~ 420 (421)
T 3l8a_A 393 ------------------------GKYFARLNVA--TPKNTVQEALSRIISVFG 420 (421)
T ss_dssp ------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred ------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence 2589999998 699999999999988753
|
| >1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.9e-27 Score=243.42 Aligned_cols=331 Identities=14% Similarity=0.076 Sum_probs=223.9
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
.++|+++...++.++.|.+++.+.+.. +.. ++.......++++++++++| . +++|+||++|+ +++..+
T Consensus 8 ~~id~~~~~~~~~~~~v~~a~~~~~~~-----~~~----~~~~~~~~~~l~~~la~~~g-~-~~~v~~~~~gt-~a~~~a 75 (356)
T 1v72_A 8 PALGFSSDNIAGASPEVAQALVKHSSG-----QAG----PYGTDELTAQVKRKFCEIFE-R-DVEVFLVPTGT-AANALC 75 (356)
T ss_dssp CCCBCSCGGGCCCCHHHHHHHHHTTSS-----CCC----STTCSHHHHHHHHHHHHHHT-S-CCEEEEESCHH-HHHHHH
T ss_pred ceEeeccCCccCCCHHHHHHHHhhccC-----ccc----ccccchHHHHHHHHHHHHhC-C-CCcEEEeCCcc-HHHHHH
Confidence 577888877778889999999886531 111 11124567889999999999 4 33689985555 467666
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH--HHHc--CceEEEEecCCCCCCCHHHHHH-HHhhh--c
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS--WRQS--LAEVVEIGLDDDGLLDIEALRS-KLELY--K 229 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~--G~~vv~v~~~~~g~ld~e~L~~-al~~~--~ 229 (609)
+.++ +++|| .|++++.+|++.... +... |++++.++.+ ++.+|+++|++ ++++. .
T Consensus 76 l~~~---------------~~~gd--~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-~~~~d~~~l~~~~i~~~~~~ 137 (356)
T 1v72_A 76 LSAM---------------TPPWG--NIYCHPASHINNDECGAPEFFSNGAKLMTVDGP-AAKLDIVRLRERTREKVGDV 137 (356)
T ss_dssp HHTS---------------CCTTE--EEEECTTSHHHHSSTTHHHHHTTSCEEEECCCG-GGCCCHHHHHHHTTSSTTCT
T ss_pred HHHh---------------cCCCC--EEEEcCccchhhhhchHHHHHhCCcEEEEecCC-CCeEcHHHHHHHhhhcchhh
Confidence 6654 36777 799999999887655 7777 9999999875 47799999999 88731 0
Q ss_pred cCCCceEEEEecccCccccc---cCHHHHHHHHHHhCCeEEEeccccCCc---ccccCCCCC-CCCccEEEEcCCCCCCC
Q 038499 230 DAKRPILGSFSACSNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPY---VEIDVRSGQ-TDGYDAIFLSTHKFLGG 302 (609)
Q Consensus 230 ~~~~~~lv~~s~~sn~TG~~---~dl~~I~~la~~~g~~vivD~A~~~~~---~~id~~~~~-~~~~D~v~~S~hK~lgg 302 (609)
..++++++++++++| ||.+ .++++|.++|++||+++|+|++++.+. ......... ..++|++++|+||+ |+
T Consensus 138 ~~~~~~~v~~~~~~~-tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~ 215 (356)
T 1v72_A 138 HTTQPACVSITQATE-VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GV 215 (356)
T ss_dssp TSCEEEEEEEESSCT-TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TC
T ss_pred ccCCceEEEEEcCCC-CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CC
Confidence 112689999999876 9995 457889999999999999999976321 111111111 02679999999999 77
Q ss_pred CCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHH
Q 038499 303 PGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKK 382 (609)
Q Consensus 303 p~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~ 382 (609)
|.|.|++++++++. +.+.......+ ....+..... .+.+.++ +...++.+.+
T Consensus 216 ~~G~g~~~~~~~~~--~~~~~~~~~~~-----------------------~~~~~~~~~~-~~~~~~l--~~~~~~~~~~ 267 (356)
T 1v72_A 216 LAAEAIVLFNTSLA--TEMSYRRKRAG-----------------------HLSSKMRFLS-AQIDAYL--TDDLWLRNAR 267 (356)
T ss_dssp SSCEEEEESSGGGH--HHHHHHHHHTT-----------------------CCCSSTHHHH-HHHHHHT--STTHHHHHHH
T ss_pred cCccEEEEECHHHH--hhHHHHhhccC-----------------------chhhhHHHHH-HHHHHHH--HhhhHHHHHH
Confidence 88778998888772 22211000000 0011111111 1122222 1222445667
Q ss_pred HHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcc
Q 038499 383 QEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCA 462 (609)
Q Consensus 383 ~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ 462 (609)
+.+++++++.+.|++++++++..+. ...++++.+ + ..+.+.|.+ .||.+++|.
T Consensus 268 ~~~~~~~~l~~~L~~~~g~~~~~~~---~~~~~~~~~-~---------------------~~~~~~l~~-~gi~v~~g~- 320 (356)
T 1v72_A 268 KANAAAQRLAQGLEGLGGVEVLGGT---EANILFCRL-D---------------------SAMIDALLK-AGFGFYHDR- 320 (356)
T ss_dssp HHHHHHHHHHHHHTTCTTEEEESCC---CSSEEEEEE-C---------------------HHHHHHHHH-TTCBCBCSS-
T ss_pred HHHHHHHHHHHHHhhCCCcEEccCC---CccEEEEEc-C---------------------HHHHHHHHh-cCeEEeccc-
Confidence 7788999999999998899987652 334443332 2 267777855 599998764
Q ss_pred cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 463 CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 463 ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+. ++++|+++++.+|++|+++++++|+++++.
T Consensus 321 ~~------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l~~ 352 (356)
T 1v72_A 321 WG------------------------------PNVVRFVTSFATTAEDVDHLLNQVRLAADR 352 (356)
T ss_dssp SS------------------------------TTEEEEECCTTCCHHHHHHHHHHHHHTC--
T ss_pred cC------------------------------CCeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 11 278999999999999999999999987654
|
| >2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-26 Score=242.08 Aligned_cols=354 Identities=17% Similarity=0.092 Sum_probs=225.0
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.+|...+-.-+.++.+.+.+. ... .+ .++.......+++++++++++|.+ +++++++ ++++++.+
T Consensus 22 ~pi~~s~~~~~~~~~~~~~~~~--~~~----~~----~y~~~~~~~~~~l~~~la~~~g~~---~~~~~~~-gt~a~~~a 87 (412)
T 2cb1_A 22 LPIYAVAAYGFKTLEEGQERFA--TGE----GY----VYARQKDPTAKALEERLKALEGAL---EAVVLAS-GQAATFAA 87 (412)
T ss_dssp CCCCCCSBCCCSSHHHHHHHHH--HCC----SC----SBTTTCCHHHHHHHHHHHHHHTCS---EEEEESS-HHHHHHHH
T ss_pred CCccccceeecCChHHHHHHhc--ccc----Cc----CcCCCCChHHHHHHHHHHHHhCCC---cEEEECC-HHHHHHHH
Confidence 4456654444566776666653 111 11 112222355788999999999985 6888855 45678877
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH----cCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
+..+ +++|| .|+++..+|+++...|.. .|++++.++. |+++|+++++ +
T Consensus 88 l~~l---------------~~~gd--~vi~~~~~~~~~~~~~~~~~~~~g~~~~~~~~------~~~~l~~~i~-----~ 139 (412)
T 2cb1_A 88 LLAL---------------LRPGD--EVVAAKGLFGQTIGLFGQVLSLMGVTVRYVDP------EPEAVREALS-----A 139 (412)
T ss_dssp HHTT---------------CCTTC--EEEEETTCCHHHHHHHHHTTTTTTCEEEEECS------SHHHHHHHCC-----T
T ss_pred HHHH---------------hCCCC--EEEEeCCCchhHHHHHHHHHHHcCCEEEEECC------CHHHHHHHhc-----c
Confidence 7654 36888 699999999998877653 6999999985 3899999998 6
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC-cEEEEE
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS-PGILLM 311 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~L~~ 311 (609)
++++|++++++||||.+.|+++|+++|++||+++|+|++++.+........ .+.|++++|+||+++||++ +|++++
T Consensus 140 ~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~~---~~~di~~~S~~K~~~~~~~~~G~~~~ 216 (412)
T 2cb1_A 140 KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGALCRPLA---WGAHVVVESLTKWASGHGSVLGGAVL 216 (412)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTSCCGGG---GTCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCccccccCCccc---cCCeEEEECCcccccCCCCcEEEEEE
Confidence 899999999999999999999999999999999999999987722111111 2689999999999998876 788887
Q ss_pred echhhcc---CCC-CCCccCCCceEeeccccccccccccccccc--ccCCC--hhHHHHHHHHHHHHHHHhcCHHHHHHH
Q 038499 312 TKALYQL---GSF-PPSTCGGGTVNYVNGFNEKDTLYLEDIEER--ESGGT--PQVIQMIRAALAFWVKEYIGHEVIKKQ 383 (609)
Q Consensus 312 ~~~~~~l---~~~-~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r--~~~gt--p~i~~~~~aal~~~~~~~~g~~~i~~~ 383 (609)
.++.... ..+ .|...|+. +...+. ...+.+..... ...|. .+.. +.+.+. ....++...++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~g~~---~~~~~~--~~~~~~~~r~~~~~~~g~~~~~~~----a~~~~~--~l~~l~~~~~~ 285 (412)
T 2cb1_A 217 SRETELWRNYPQFLQPDLKGQI---PWEALR--ARCFPERVRTLGLSLCGMALSPFN----AYLLFQ--GLETVALRVAR 285 (412)
T ss_dssp ECCCSGGGGSGGGGCC----------HHHHG--GGHHHHHHHHHHTTTTCCCCCHHH----HHHHHH--HGGGHHHHHHH
T ss_pred eccccccccccccccccccccc---hhhccc--hHHHHHHHHHHHHHhcCCCCChHH----hHHHHc--CCchHHHHHHH
Confidence 6632000 011 12221111 000000 00111111110 01121 1111 111111 11223444556
Q ss_pred HHHHHHHHHHHhCCCCceEEe-CCCC-------------CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHH
Q 038499 384 EETYIERALERLLPNQNIKIL-GNTS-------------TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLL 449 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~-~~~~-------------~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 449 (609)
..++.+++.+.|.+++++.++ .+.. ....++++|.+ . +.+.+.+.|
T Consensus 286 ~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~-------------------~~~~~~~~l 345 (412)
T 2cb1_A 286 MSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G-------------------DLERASRFL 345 (412)
T ss_dssp HHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S-------------------SHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C-------------------CHHHHHHHH
Confidence 667889999999998898744 3321 13567888888 5 356677777
Q ss_pred hhhcCcEeccC---------cccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 450 NDLFGIQARGG---------CACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 450 ~~~~GI~v~~G---------~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
. ..||.+ +| +.|+.+ .|.. +...... ..|+.++.||+|++.++++++++.++++|+.
T Consensus 346 ~-~~~i~~-~~s~g~~~sl~~~~~~~-~~~~--~~~~~~~---------~~g~~~~~iR~s~g~~~~~~~i~~l~~al~~ 411 (412)
T 2cb1_A 346 G-AIRLLK-AANLGDARTLLVHPWTT-THSR--LKEEARL---------QAGVTPGLVRVSVGLEDPLDLLALFEEALEA 411 (412)
T ss_dssp H-HCSSEE-CSCCSCSSCEEECTTTT-TTTT--SCHHHHH---------HTTCCTTEEEEECCSSCHHHHHHHHHHHHHC
T ss_pred H-hCCeee-ecccCCCcceeecCccc-cccc--CCHHHHH---------hcCCCCCeEEEEeccCCHHHHHHHHHHHHhh
Confidence 4 469999 88 467632 2211 1110000 0233479999999999999999999999874
|
| >1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.3e-26 Score=239.80 Aligned_cols=344 Identities=10% Similarity=0.037 Sum_probs=229.7
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHH-HHHHHHHHHHHHhC--CCCCCcEEEeCChHHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTN-MVHEASNYIKKCLG--GGQEDAMIFCGSGTTA 151 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~-~~~e~r~~ia~~~g--~~~~~~vift~sGtta 151 (609)
++++++..+... +.++.|.+++.+.+... .. .|..+ ..+ +++.+.+++.+.+| .+++ +|++| +|+++
T Consensus 28 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~--~~~~lr~~la~~l~~~~g~~~~~~-~v~~t-~g~~~ 98 (390)
T 1d2f_A 28 ADLLPFTISDMDFATAPCIIEALNQRLMHG----VF-GYSRW--KNDEFLAAIAHWFSTQHYTAIDSQ-TVVYG-PSVIY 98 (390)
T ss_dssp --CEECCSSSCSSCCCHHHHHHHHHHHTTC----CC-CCCCS--CCHHHHHHHHHHHHHHSCCCCCGG-GEEEE-SCHHH
T ss_pred CCeeEeeecCCCCCCCHHHHHHHHHHHhCC----CC-CCCCC--ChHHHHHHHHHHHHHhcCCCCCHH-HEEEc-CCHHH
Confidence 456777655543 45678999988877431 11 11111 223 44444444444456 5555 89998 78888
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCC---CCCHHHHHHHHhhh
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDG---LLDIEALRSKLELY 228 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g---~ld~e~L~~al~~~ 228 (609)
++..++.++ +++|| .|++..+.|+++...++..|++++.++.+.++ .+|+++|++++++
T Consensus 99 al~~~~~~l---------------~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~- 160 (390)
T 1d2f_A 99 MVSELIRQW---------------SETGE--GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK- 160 (390)
T ss_dssp HHHHHHHHS---------------SCTTC--EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS-
T ss_pred HHHHHHHHh---------------cCCCC--EEEEcCCCcHHHHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhcc-
Confidence 999888876 36788 68999999999998899999999999986542 5899999999973
Q ss_pred ccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCCCCccEEEEcCCCCCC
Q 038499 229 KDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQTDGYDAIFLSTHKFLG 301 (609)
Q Consensus 229 ~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~~~~D~v~~S~hK~lg 301 (609)
.+++++++++++||||.+.| +++|+++|++||+++|+|++++... ...++..+.....|. +.|+||++|
T Consensus 161 ---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~~ 236 (390)
T 1d2f_A 161 ---PECKIMLLCSPQNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSFN 236 (390)
T ss_dssp ---TTEEEEEEESSCTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHHT
T ss_pred ---CCCeEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhhc
Confidence 37899999999999999988 7889999999999999999988642 222332221111267 999999997
Q ss_pred CCC-CcEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHH
Q 038499 302 GPG-SPGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEV 379 (609)
Q Consensus 302 gp~-g~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~ 379 (609)
.|+ .+|+++++ +++ ++.+.....| ....++++......+...+.. .....+.
T Consensus 237 ~~G~r~G~~~~~~~~~--~~~~~~~~~~-----------------------~~~~~~~~~~~~~a~~~~l~~-~~~~~~~ 290 (390)
T 1d2f_A 237 IPALTGAYGIIENSSS--RDAYLSALKG-----------------------RDGLSSPSVLALTAHIAAYQQ-GAPWLDA 290 (390)
T ss_dssp CGGGCCEEEEECSHHH--HHHHHHHHHT-----------------------TSCCCSCCHHHHHHHHHHHHH-CHHHHHH
T ss_pred ccChhheEEEECCHHH--HHHHHHHHhh-----------------------hcccCCCCHHHHHHHHHHHhc-CHHHHHH
Confidence 332 47999996 455 2222111000 111234444333222111211 1223567
Q ss_pred HHHHHHHHHHHHHHHhCC-CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEec
Q 038499 380 IKKQEETYIERALERLLP-NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQAR 458 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~-~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~ 458 (609)
+.++.+++++++.+.|++ +|++++..+ ..+++.+...+ .. ..+...+.+.|.++.||.++
T Consensus 291 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~-~~--------------~~~~~~l~~~l~~~~gi~v~ 351 (390)
T 1d2f_A 291 LRIYLKDNLTYIADKMNAAFPELNWQIP----QSTYLAWLDLR-PL--------------NIDDNALQKALIEQEKVAIM 351 (390)
T ss_dssp HHHHHHHHHHHHHHHHHHHCSSCCCCCC----SBCSEEEEECG-GG--------------CCCHHHHHHHHHHTTCEECE
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCEEecC----CccEEEEEEcc-cc--------------CCCHHHHHHHHHHHcCEEee
Confidence 777888889999999987 788876644 34555443333 10 03567888888755799999
Q ss_pred cCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 459 GGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 459 ~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+|..|. +. .++++||+++. ++++++.+++.|++++++
T Consensus 352 ~g~~f~-~~--------------------------~~~~~Ris~~~--~~~~l~~~l~~l~~~l~~ 388 (390)
T 1d2f_A 352 PGYTYG-EE--------------------------GRGFVRLNAGC--PRSKLEKGVAGLINAIRA 388 (390)
T ss_dssp EGGGGC-GG--------------------------GTTEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred CccccC-CC--------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHh
Confidence 987775 10 15899999985 688999999999888754
|
| >2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-26 Score=241.15 Aligned_cols=326 Identities=13% Similarity=0.000 Sum_probs=225.3
Q ss_pred ceEEecCCCCCC-ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----C--CCCCCcEEEeCChH
Q 038499 77 RLTYADHTASGR-SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----G--GGQEDAMIFCGSGT 149 (609)
Q Consensus 77 ~~vyld~~a~g~-~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g--~~~~~~vift~sGt 149 (609)
.+++++.+.... .++.+.+++.+.+.... . .|..... ..++++.+++++ | .+++ +|++| +|+
T Consensus 30 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~---~--~y~~~~~----~~~l~~~la~~~~~~~g~~~~~~-~v~~~-~g~ 98 (370)
T 2z61_A 30 KVIHLEIGEPDFNTPKPIVDEGIKSLKEGK---T--HYTDSRG----ILELREKISELYKDKYKADIIPD-NIIIT-GGS 98 (370)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHHHTTC---C--SCCCTTC----CHHHHHHHHHHHHHHSSCCCCGG-GEEEE-SSH
T ss_pred CEEEccCCCCCCCCCHHHHHHHHHHHHcCc---c--CCCCCCC----CHHHHHHHHHHHHHHhCCCCChh-hEEEC-CCh
Confidence 567887776543 46788888887764311 0 0111111 234555555555 4 4454 89998 777
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhc
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYK 229 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~ 229 (609)
++++..++.++ +++|| .|++..+.|+++...++..|++++.++ +|+++|+++++
T Consensus 99 ~~a~~~~~~~~---------------~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~v~------~d~~~l~~~l~--- 152 (370)
T 2z61_A 99 SLGLFFALSSI---------------IDDGD--EVLIQNPCYPCYKNFIRFLGAKPVFCD------FTVESLEEALS--- 152 (370)
T ss_dssp HHHHHHHHHHH---------------CCTTC--EEEEESSCCTHHHHHHHHTTCEEEEEC------SSHHHHHHHCC---
T ss_pred HHHHHHHHHHh---------------cCCCC--EEEEeCCCchhHHHHHHHcCCEEEEeC------CCHHHHHHhcc---
Confidence 77899888876 36888 699999999999999999999999998 68999999997
Q ss_pred cCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc---cccCCCCC-CCCccEEEEcCCCCCCCCC-
Q 038499 230 DAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV---EIDVRSGQ-TDGYDAIFLSTHKFLGGPG- 304 (609)
Q Consensus 230 ~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~---~id~~~~~-~~~~D~v~~S~hK~lggp~- 304 (609)
++++++++++++||||.+.|.+ |.++|++||+++|+|++++.+.. +.++..+. ..+.|+++.|+||++|.|+
T Consensus 153 --~~~~~v~~~~p~nptG~~~~~~-l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~ 229 (370)
T 2z61_A 153 --DKTKAIIINSPSNPLGEVIDRE-IYEFAYENIPYIISDEIYNGLVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGW 229 (370)
T ss_dssp --SSEEEEEEESSCTTTCCCCCHH-HHHHHHHHCSEEEEECTTTTCBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGG
T ss_pred --cCceEEEEcCCCCCcCcccCHH-HHHHHHHcCCEEEEEcchhhcccCCCCcCHHHccCCCCcEEEEecChhccCCccc
Confidence 5789999999999999999999 99999999999999999886533 22332221 2367899999999997332
Q ss_pred CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHH
Q 038499 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKK 382 (609)
Q Consensus 305 g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~ 382 (609)
.+|++++++++ ++.+.+.. . ...++++..... .+++... ...+.+.+.+
T Consensus 230 r~G~~~~~~~~--~~~~~~~~------------------------~-~~~~~~~~~~~~a~~~~l~~~--~~~~~~~~~~ 280 (370)
T 2z61_A 230 RIGYVISNDEI--IEAILKLQ------------------------Q-NLFISAPTISQYAALKAFEKE--TEREINSMIK 280 (370)
T ss_dssp CCEEEECCHHH--HHHHHHHH------------------------H-HHTSSSCHHHHHHHGGGGSHH--HHHHHHHHHH
T ss_pred eEEEEEECHHH--HHHHHHHH------------------------h-hcccCCCHHHHHHHHHHHhcc--CHHHHHHHHH
Confidence 38999999887 22221110 0 011222322221 1222210 1224566778
Q ss_pred HHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcc
Q 038499 383 QEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCA 462 (609)
Q Consensus 383 ~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ 462 (609)
+.+++++++.+.|+++ ++++..+ ..+++.+...+ . +...+.+.|.+++||.+++|..
T Consensus 281 ~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-~-----------------~~~~~~~~l~~~~gi~v~~g~~ 337 (370)
T 2z61_A 281 EFDRRRRLVLKYVKDF-GWEVNNP----IGAYYVFPNIG-E-----------------DGREFAYKLLKEKFVALTPGIG 337 (370)
T ss_dssp HHHHHHHHHHHHHHHT-TCBCCCC----CBTTEECCBCS-S-----------------CHHHHHHHHHHHHCEECEEGGG
T ss_pred HHHHHHHHHHHHHHHc-CCeecCC----CcceEEEEecC-C-----------------CHHHHHHHHHHhCCEEEeCchh
Confidence 8888899999999877 7766544 23444443333 0 3667888886557999998876
Q ss_pred cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 463 CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 463 ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
|... .++++||+++ +++++++.++++|+++++
T Consensus 338 f~~~---------------------------~~~~~Ri~~~--~~~~~i~~~~~~l~~~l~ 369 (370)
T 2z61_A 338 FGSK---------------------------GKNYIRISYA--NSYENIKEGLERIKEFLN 369 (370)
T ss_dssp GCGG---------------------------GSSBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred hCCC---------------------------CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence 6410 1489999999 699999999999988763
|
| >1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=237.05 Aligned_cols=326 Identities=13% Similarity=0.021 Sum_probs=223.3
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
.+++|+.+... +.++.+.+++.+.+......+. ....++++.+++++|.+++ +|++| +|+++++..
T Consensus 25 ~~idl~~~~~~~~~~~~v~~a~~~~~~~~~~y~~-----------~~~~~l~~~la~~~~~~~~-~v~~~-~g~~~al~~ 91 (364)
T 1lc5_A 25 QLLDFSANINPLGMPVSVKRALIDNLDCIERYPD-----------ADYFHLHQALARHHQVPAS-WILAG-NGETESIFT 91 (364)
T ss_dssp GSEECSSCCCTTCCCHHHHHHHHHTGGGGGSCCC-----------TTCHHHHHHHHHHHTSCGG-GEEEE-SSHHHHHHH
T ss_pred ceEEeccccCCCCCCHHHHHHHHHHHHHhhcCCC-----------CCHHHHHHHHHHHHCcCHH-HEEEC-CCHHHHHHH
Confidence 45666555432 2567788888887643211111 1246789999999998776 89998 788888988
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCC-HHHHHHHHhhhccCCCc
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLD-IEALRSKLELYKDAKRP 234 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld-~e~L~~al~~~~~~~~~ 234 (609)
++..+ +|| .|++..+.|+++...++..|++++.++.+.+..++ ++++.++++ +++
T Consensus 92 ~~~~~-----------------~gd--~vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~l~~~~~~~~-----~~~ 147 (364)
T 1lc5_A 92 VASGL-----------------KPR--RAMIVTPGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALT-----PDL 147 (364)
T ss_dssp HHHHH-----------------CCS--EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCC-----TTC
T ss_pred HHHHc-----------------CCC--eEEEeCCCcHHHHHHHHHcCCeEEEEeCCcccccchhHHHHHhcc-----CCC
Confidence 87653 456 68888899999998899999999999987522234 455555554 578
Q ss_pred eEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc-cccCCC-CCCCCccEEEEcCCCCCCCCC-CcEE
Q 038499 235 ILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-EIDVRS-GQTDGYDAIFLSTHKFLGGPG-SPGI 308 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~-~id~~~-~~~~~~D~v~~S~hK~lggp~-g~G~ 308 (609)
+++++++++||||.+.| +++|+++|++||+++|+|++++.... ...+-. ....+.|+++.|+||++|.|+ ++|+
T Consensus 148 ~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~ 227 (364)
T 1lc5_A 148 DCLFLCTPNNPTGLLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGY 227 (364)
T ss_dssp CEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEE
T ss_pred CEEEEeCCCCCCCCCCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhhcCCccceEE
Confidence 99999999999999999 88999999999999999999875321 111111 111356899999999998443 4799
Q ss_pred EE-EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 038499 309 LL-MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETY 387 (609)
Q Consensus 309 L~-~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (609)
++ .++++. +.+.+. ....+++...... +.+++ +.....+.+.++.+++
T Consensus 228 ~~~~~~~~~--~~l~~~---------------------------~~~~~~~~~~~~~-~~~~l-~~~~~~~~~~~~~~~~ 276 (364)
T 1lc5_A 228 LVNSDDAAM--ARMRRQ---------------------------QMPWSVNALAALA-GEVAL-QDSAWQQATWHWLREE 276 (364)
T ss_dssp EECCCHHHH--HHHHHH---------------------------SCTTCSCHHHHHH-HHHGG-GCHHHHHHHHHHHHHH
T ss_pred EEECCHHHH--HHHHHh---------------------------CCCCCCCHHHHHH-HHHHH-hCcHHHHHHHHHHHHH
Confidence 99 888772 222111 0011223322221 11221 1222456777888888
Q ss_pred HHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh
Q 038499 388 IERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY 467 (609)
Q Consensus 388 ~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~ 467 (609)
++++.+.|+++|++++..+ ..+++++.+.. ....+.+.|.+ .||.+++|..|.+.
T Consensus 277 ~~~l~~~L~~~~~~~~~~~----~g~~~~~~~~~-------------------~~~~l~~~l~~-~gi~v~~g~~~~~~- 331 (364)
T 1lc5_A 277 GARFYQALCQLPLLTVYPG----RANYLLLRCER-------------------EDIDLQRRLLT-QRILIRSCANYPGL- 331 (364)
T ss_dssp HHHHHHHHHTSTTEEECCC----SSSEEEEEESC-------------------TTCCHHHHHHT-TTEECEECTTSTTC-
T ss_pred HHHHHHHHhcCCCCEECCC----CCeEEEEECCC-------------------cHHHHHHHHHH-CCcEEeeCcccCCC-
Confidence 9999999998889988643 34555544432 13357777766 49999988766421
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++||+++ +.+|+++++++|+.+++.
T Consensus 332 --------------------------~~~~iRis~~---~~~~~~~l~~~l~~~~~~ 359 (364)
T 1lc5_A 332 --------------------------DSRYYRVAIR---SAAQNERLLAALRNVLTG 359 (364)
T ss_dssp --------------------------CTTEEEEECC---CHHHHHHHHHHHHHHC--
T ss_pred --------------------------CCCEEEEEeC---CHHHHHHHHHHHHHHhhc
Confidence 2589999986 799999999999988654
|
| >1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=243.69 Aligned_cols=360 Identities=12% Similarity=-0.001 Sum_probs=232.9
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC-CCC-cEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG-QED-AMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~-~~~-~vift~sGttaal 153 (609)
.+++|+.+... +.++.+.+++.+.+... +.....|....+..++.+.+.+++.+.+|.+ ..+ +|++| +|+++++
T Consensus 38 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~~v~~~-~g~~~a~ 114 (429)
T 1yiz_A 38 KPLNLGQGFPDYHAPKYALNALAAAANSP--DPLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVT-VGAYEAL 114 (429)
T ss_dssp CCEECCSSSCSSCCCHHHHHHHHHHHTCS--CGGGGSCCCSSCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHHH
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhcc--ccCccCCCCCCCcHHHHHHHHHHHHHHhCCCCCCcCCEEEe-cChHHHH
Confidence 46777766544 35678899998877542 0000011111123445555555555556853 224 79998 7888899
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC----------CCCCHHHHHH
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD----------GLLDIEALRS 223 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~----------g~ld~e~L~~ 223 (609)
..++.++ +++|| .|++..+.|+++...++..|++++.++.+.+ +.+|+++|++
T Consensus 115 ~~~~~~~---------------~~~gd--~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 177 (429)
T 1yiz_A 115 YATIQGH---------------VDEGD--EVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEA 177 (429)
T ss_dssp HHHHHHH---------------CCTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECBCCCSSSSEEGGGCBCCHHHHHH
T ss_pred HHHHHHh---------------cCCCC--EEEEcCCCchhHHHHHHHcCCEEEEEeCCcccccccccccCcccCHHHHHH
Confidence 9888876 36788 6899999999998888889999999998753 5789999999
Q ss_pred HHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCCC-CCCccEEEEc
Q 038499 224 KLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQ-TDGYDAIFLS 295 (609)
Q Consensus 224 al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~-~~~~D~v~~S 295 (609)
+++ ++++++++++++||||.+.| +++|+++|++||+++|+|++++.... ...+..+. ..+.|+++.|
T Consensus 178 ~l~-----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s 252 (429)
T 1yiz_A 178 LFN-----EKTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGS 252 (429)
T ss_dssp HCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGEEEEEE
T ss_pred Hhc-----cCceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCceEEEec
Confidence 997 58999999999999999986 88999999999999999999875221 11222111 1357999999
Q ss_pred CCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-
Q 038499 296 THKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE- 373 (609)
Q Consensus 296 ~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~- 373 (609)
+||++|.|+ .+|++++++++ ++.+... ......+.+..... ++.+. +..
T Consensus 253 ~sK~~~~~G~r~G~~~~~~~~--~~~l~~~-------------------------~~~~~~~~~~~~~~-a~~~~-l~~~ 303 (429)
T 1yiz_A 253 AGKTFSLTGWKIGWAYGPEAL--LKNLQMV-------------------------HQNCVYTCATPIQE-AIAVG-FETE 303 (429)
T ss_dssp HHHHHTCGGGCCEEEESCHHH--HHHHHHH-------------------------HHTTTCCCCHHHHH-HHHHH-HHHH
T ss_pred chhccCCCCcceEEEEeCHHH--HHHHHHH-------------------------HhhcccCCChHHHH-HHHHH-Hhcc
Confidence 999998332 38999999887 2222110 00011122222211 11122 222
Q ss_pred -------hcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHH
Q 038499 374 -------YIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVA 446 (609)
Q Consensus 374 -------~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 446 (609)
....+.++++.+++++++.+.|+++ ++.+..+. ...++++.+.. ... . .. ........+...++
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~g~~~~~~~~~-~~~-~--~~-~~~~~~~~~~~~l~ 374 (429)
T 1yiz_A 304 LKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQ---GGYFMVADWSS-LDS-K--VD-LTQETDARKDYRFT 374 (429)
T ss_dssp HTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-TCEEEECS---BSSEEEEECCS-SCT-T--TT-CCSSSSSCHHHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHhC-CCcccCCC---cceEEEEEccc-ccc-c--cc-ccccccCCCHHHHH
Confidence 2336777888888999999999876 77776542 22234444332 100 0 00 00000012456788
Q ss_pred HHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 447 TLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 447 ~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
+.|.+++||.+++|..|..+.... ..++++||+++ +++++++.++++|+++++
T Consensus 375 ~~l~~~~gv~v~~g~~f~~~~~~~----------------------~~~~~iRis~~--~~~e~i~~~l~~l~~~l~ 427 (429)
T 1yiz_A 375 KWMTKSVGLQGIPPSAFYSEPNKH----------------------LGEDFVRYCFF--KKDENLQKAAEILRKWKG 427 (429)
T ss_dssp HHHHHHTSEECBCGGGGSCGGGGG----------------------GTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred HHHHHhCCEEEeCchHhCCCcccC----------------------CCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence 877656799999887654221000 01589999998 489999999999988753
|
| >2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=245.74 Aligned_cols=351 Identities=13% Similarity=0.033 Sum_probs=231.8
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC-CCC-cEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG-QED-AMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~-~~~-~vift~sGttaal 153 (609)
..++|+.+... +.++.+.+++.+.+... .. .|....+..++.+.+.+++.+.+|.+ ..+ +|++| +|+++++
T Consensus 26 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~----~~-~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~~v~~t-~g~~~al 99 (411)
T 2o0r_A 26 GAVNLGQGFPDEDGPPKMLQAAQDAIAGG----VN-QYPPGPGSAPLRRAIAAQRRRHFGVDYDPETEVLVT-VGATEAI 99 (411)
T ss_dssp TCEESSCSSCSSCCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEE-EHHHHHH
T ss_pred CeeeccCcCCCCCCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHHHHHHcCCCCCCCceEEEe-CCHHHHH
Confidence 35677666544 35678889988877531 00 11111123445555555555556754 223 79998 7888889
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC---CCCCHHHHHHHHhhhcc
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD---GLLDIEALRSKLELYKD 230 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~---g~ld~e~L~~al~~~~~ 230 (609)
..++.++ +++|| .|+++.+.|+++...++..|++++.++.+.+ +.+|+++|+++++
T Consensus 100 ~~~~~~~---------------~~~gd--~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~---- 158 (411)
T 2o0r_A 100 AAAVLGL---------------VEPGS--EVLLIEPFYDSYSPVVAMAGAHRVTVPLVPDGRGFALDADALRRAVT---- 158 (411)
T ss_dssp HHHHHHH---------------CCTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHHHCC----
T ss_pred HHHHHHh---------------cCCCC--EEEEeCCCcHhHHHHHHHcCCEEEEeeccccccCCCCCHHHHHHhhc----
Confidence 9888876 36888 6999999999998888899999999998653 5689999999997
Q ss_pred CCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCcc----cccCCCCC-CCCccEEEEcCCCCCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQ-TDGYDAIFLSTHKFLGG 302 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~-~~~~D~v~~S~hK~lgg 302 (609)
++++++++++++||||.+.|. ++|+++|++||+++|+|++++.+.. ..++..+. ..+.|+++.|+||++|.
T Consensus 159 -~~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~ 237 (411)
T 2o0r_A 159 -PRTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITISSAAKMFNC 237 (411)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTC
T ss_pred -cCceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEeechhhcCC
Confidence 579999999999999999875 8899999999999999999876432 12222221 13579999999999983
Q ss_pred CC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHH-HHHHHHHHHHHHhcCHHHH
Q 038499 303 PG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ-MIRAALAFWVKEYIGHEVI 380 (609)
Q Consensus 303 p~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~-~~~aal~~~~~~~~g~~~i 380 (609)
|+ .+|++++++++. +.+... ......+.+...+ .+.+++.. ...+.+.+
T Consensus 238 ~G~r~G~~~~~~~~~--~~l~~~------------------------~~~~~~~~~~~~~~a~~~~l~~---~~~~~~~~ 288 (411)
T 2o0r_A 238 TGWKIGWACGPAELI--AGVRAA------------------------KQYLSYVGGAPFQPAVALALDT---EDAWVAAL 288 (411)
T ss_dssp TTTCEEEEECCHHHH--HHHHHH------------------------HHHHTSCCCTTHHHHHHHHHHH---CHHHHHHH
T ss_pred ccceEEEEeeCHHHH--HHHHHH------------------------HhhccCCCChHHHHHHHHHHhC---ChHHHHHH
Confidence 32 389999988772 222111 0000111112222 11222221 12245677
Q ss_pred HHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccC
Q 038499 381 KKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGG 460 (609)
Q Consensus 381 ~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G 460 (609)
.++.+++++++.+.|+++ ++.+..+ ..+++.+...+ .. ...+...+.+.|.++.||.+++|
T Consensus 289 ~~~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~-~~-------------~~~~~~~~~~~l~~~~gi~v~~g 349 (411)
T 2o0r_A 289 RNSLRARRDRLAAGLTEI-GFAVHDS----YGTYFLCADPR-PL-------------GYDDSTEFCAALPEKVGVAAIPM 349 (411)
T ss_dssp HHHHHHHHHHHHHHHHHH-TCEECCC----CBSSEEEEECG-GG-------------TCCCHHHHHHHHHHHHSEECEEG
T ss_pred HHHHHHHHHHHHHHHHHc-CCEecCC----CeeEEEEEecC-CC-------------CCCCHHHHHHHHHHhCCEEEcCh
Confidence 788888899999999876 7887654 23434333333 10 00246778887766679999998
Q ss_pred cccCCh---hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 461 CACAGP---YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 461 ~~ca~p---~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..|.++ .++.+... .++++||+++ ++++|++.++++|+++++.
T Consensus 350 ~~f~~~~~~~~~~~~~~-------------------~~~~iRis~~--~~~e~i~~~~~~l~~~~~~ 395 (411)
T 2o0r_A 350 SAFCDPAAGQASQQADV-------------------WNHLVRFTFC--KRDDTLDEAIRRLSVLAER 395 (411)
T ss_dssp GGGSCCC--------CC-------------------GGGCEEEECC--SCHHHHHHHHHHHGGGGC-
T ss_pred hhhCCCccccccccccC-------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 877422 12222111 1479999997 4899999999999876543
|
| >3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=233.63 Aligned_cols=328 Identities=11% Similarity=0.036 Sum_probs=223.2
Q ss_pred EEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHH--hCCCCCCcEEEeCChHHHHHHH
Q 038499 79 TYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKC--LGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 79 vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~--~g~~~~~~vift~sGttaal~~ 155 (609)
++|+.+... +.++.+.+++.+.+.......+. +..... .++.+.+.+++++. ++.+++ +|+++ +|+++++..
T Consensus 33 idl~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~--y~~~~~-~~l~~~la~~l~~~~g~~~~~~-~v~~~-~G~~~al~~ 107 (369)
T 3cq5_A 33 IRLNTNENPYPPSEALVADLVATVDKIATELNR--YPERDA-VELRDELAAYITKQTGVAVTRD-NLWAA-NGSNEILQQ 107 (369)
T ss_dssp EECSSCCCCSCCCHHHHHHHHHHHHHHGGGTTS--CCCTTC-HHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHHHHHHHH
T ss_pred eeccCCCCCCCCCHHHHHHHHHHHHhccccccc--CCCccH-HHHHHHHHHhhhhcccCCCChH-hEEEC-CChHHHHHH
Confidence 566655442 35678888888777532000111 111111 23333333333333 344555 89998 899999988
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++.++ +++|| .|++..++|+++...++..|++++.++.+.++.+|+++|++++++ .+++
T Consensus 108 ~~~~l---------------~~~gd--~Vl~~~~~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~----~~~~ 166 (369)
T 3cq5_A 108 LLQAF---------------GGPGR--TALGFQPSYSMHPILAKGTHTEFIAVSRGADFRIDMDVALEEIRA----KQPD 166 (369)
T ss_dssp HHHHH---------------CSTTC--EEEEEESSCTHHHHHHHHTTCEEEEEECCTTSSCCHHHHHHHHHH----HCCS
T ss_pred HHHHh---------------cCCCC--EEEEcCCChHHHHHHHHHcCCEEEEecCCcCCCCCHHHHHHHhhc----cCCC
Confidence 88876 36888 699999999999988899999999999887778999999999983 2788
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCC-CCCC-ccEEEEcCCCCCCCCC-CcEEEEEe
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSG-QTDG-YDAIFLSTHKFLGGPG-SPGILLMT 312 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~-~~~~-~D~v~~S~hK~lggp~-g~G~L~~~ 312 (609)
++++++++||||.+.|.+++.++++.+++++|+|++++.+....++... ...+ .++++.|+||++|.|+ ++|+++++
T Consensus 167 ~v~~~~~~nptG~~~~~~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~ 246 (369)
T 3cq5_A 167 IVFVTTPNNPTGDVTSLDDVERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGGRLGYFVAN 246 (369)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGGCCEEEEEC
T ss_pred EEEEeCCCCCCCCCCCHHHHHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCcccceEEEEeC
Confidence 9999999999999999999999999999999999998765432221111 1123 5689999999997443 47999999
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERAL 392 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~ 392 (609)
+++. +.+.... . ..+++...... +.+.+ .+....+.+.++.+++++++.
T Consensus 247 ~~~~--~~l~~~~------------------------~---~~~~~~~~~~a-~~~~l-~~~~~~~~~~~~~~~~~~~l~ 295 (369)
T 3cq5_A 247 PAFI--DAVMLVR------------------------L---PYHLSALSQAA-AIVAL-RHSADTLGTVEKLSVERVRVA 295 (369)
T ss_dssp THHH--HHHHTTS------------------------C---TTCSCHHHHHH-HHHHH-HTHHHHHTHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHcC------------------------C---CCCCCHHHHHH-HHHHh-cCHHHHHHHHHHHHHHHHHHH
Confidence 8872 2221110 0 01122222211 11111 122235667778888888999
Q ss_pred HHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhc
Q 038499 393 ERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLL 472 (609)
Q Consensus 393 ~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll 472 (609)
+.|++. ++++..+ ..+++++.+ + .+...+.+.|. +.||.+++| .
T Consensus 296 ~~L~~~-g~~~~~~----~~~~~~~~~-~------------------~~~~~l~~~l~-~~gi~v~~~---~-------- 339 (369)
T 3cq5_A 296 ARLEEL-GYAVVPS----ESNFVFFGD-F------------------SDQHAAWQAFL-DRGVLIRDV---G-------- 339 (369)
T ss_dssp HHHHHH-TCEEECC----SSSEEEEEC-C------------------SSHHHHHHHHH-HTTEECBCC---S--------
T ss_pred HHHHhC-CCEECCC----CCeEEEEEC-C------------------CCHHHHHHHHH-HCCEEEEEC---C--------
Confidence 888774 7887633 334554433 2 24677888885 469999865 1
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 473 DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 473 ~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++++||+++ +++|+++++++|+++++
T Consensus 340 ---------------------~~~~iRis~~---~~~~i~~~~~~l~~~~~ 366 (369)
T 3cq5_A 340 ---------------------IAGHLRTTIG---VPEENDAFLDAAAEIIK 366 (369)
T ss_dssp ---------------------CTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred ---------------------CCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence 1479999998 89999999999998864
|
| >1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-25 Score=237.61 Aligned_cols=364 Identities=13% Similarity=0.037 Sum_probs=234.6
Q ss_pred HHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHH
Q 038499 91 RYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILRE 170 (609)
Q Consensus 91 ~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~ 170 (609)
+.+.+++.+.+...|.++ .| ....++++.+++++|. ++++++ +|+++++..++.+++
T Consensus 12 ~~v~~a~~~~~~~~~~~~------~g----~~~~~l~~~la~~~~~---~~v~~~-~ggt~al~~~~~~l~--------- 68 (394)
T 1o69_A 12 GNELKYIEEVFKSNYIAP------LG----EFVNRFEQSVKDYSKS---ENALAL-NSATAALHLALRVAG--------- 68 (394)
T ss_dssp CCHHHHHHHHHHHTTTSC------TT----HHHHHHHHHHHHHHCC---SEEEEE-SCHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHHHHHcCCccC------CC----hHHHHHHHHHHHHhCC---CcEEEe-CCHHHHHHHHHHHcC---------
Confidence 456666666654322221 11 3467899999999998 378998 666778988888763
Q ss_pred HHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcccccc
Q 038499 171 KLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYS 250 (609)
Q Consensus 171 ~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~ 250 (609)
+++|| .|+++.++|+++...++..|++++.++.++++.+|+++|++++++.. ++++++++++ +||...
T Consensus 69 -----~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~i~~~~--~~~~~v~~~~---~~G~~~ 136 (394)
T 1o69_A 69 -----VKQDD--IVLASSFTFIASVAPICYLKAKPVFIDCDETYNIDVDLLKLAIKECE--KKPKALILTH---LYGNAA 136 (394)
T ss_dssp -----CCTTC--EEEEESSSCGGGTHHHHHTTCEEEEECBCTTSSBCHHHHHHHHHHCS--SCCCEEEEEC---GGGCCC
T ss_pred -----CCCCC--EEEECCCccHHHHHHHHHcCCEEEEEEeCCCCCcCHHHHHHHHhccc--CCceEEEEEC---CCCChh
Confidence 36888 69999999999999999999999999998888899999999998410 1688888875 899999
Q ss_pred CHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe-chhhccCCCCCCccCCC
Q 038499 251 DTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT-KALYQLGSFPPSTCGGG 329 (609)
Q Consensus 251 dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~-~~~~~l~~~~p~~~ggg 329 (609)
|+++|.++|++||+++|+|++++.+....+.......++|++++|.||+++ |.++|+++++ +++. +.+.+...++.
T Consensus 137 ~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~-~~~~G~~~~~~~~l~--~~l~~~~~~~~ 213 (394)
T 1o69_A 137 KMDEIVEICKENDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIIT-TSGGGMLIGKNKEKI--EKARFYSTQAR 213 (394)
T ss_dssp CHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSC-CSSCEEEEESCHHHH--HHHHHHTBTCC
T ss_pred hHHHHHHHHHHcCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCC-CCCceEEEECCHHHH--HHHHHHHHhcc
Confidence 999999999999999999999986654333211111357889999999998 4568999996 5652 22222111110
Q ss_pred ceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCC
Q 038499 330 TVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTST 409 (609)
Q Consensus 330 ~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~ 409 (609)
. ....+...+.++..+++++.+.+... ....++...++.+++++++.+.|.++ ++++.+...
T Consensus 214 ~----------~~~~~~~~~~g~~~~~~~~~aa~~l~------~l~~l~~~~~~~~~~~~~l~~~L~~~--~~~~~~~~~ 275 (394)
T 1o69_A 214 E----------NCLHYEHLDYGYNYRLSNVLGAIGVA------QMEVLEQRVLKKREIYEWYKEFLGEY--FSFLDELEN 275 (394)
T ss_dssp C----------SSSSCCCSSCCCBCBCCHHHHHHHHH------HHTTHHHHHHHHHHHHHHHHHHHTTT--EECCCCCTT
T ss_pred c----------cCccccccccCcccCcCHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhccc--ccccCCCCC
Confidence 0 00001122334456677776654322 11135567788899999999999887 666654211
Q ss_pred --CCcceEEEEeccCCCC---CcCC-CCC-CCCCCCCCChHHHHHHHhhhcCcEeccCcccCC--hhhhhhc--CCChhH
Q 038499 410 --KRQAILSFNIHSSTIN---SSLG-ENT-KTETDKPLHGPFVATLLNDLFGIQARGGCACAG--PYGHHLL--DLDEAQ 478 (609)
Q Consensus 410 --~r~~~~~f~~~~~~~~---~~~~-~~~-~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~--p~~~~ll--~i~~~~ 478 (609)
....++++.+.. ... ..+. .+. .......++...+.+.|.+ .||.+++|..|.. |....+. ++. .
T Consensus 276 ~~~~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~p~~~~~~~~~~~--~ 351 (394)
T 1o69_A 276 SRSNRWLSTALINF-DKNELNACQKDINISQKNITLHPKISKLIEDLKN-KQIETRPLWKAMHTQEVFKGAKAYLNG--N 351 (394)
T ss_dssp EECCCSSEEEEESC-CGGGSCCCCEEEECCCCCCCCCHHHHHHHHHHHH-TTCCCBCCCCCGGGCGGGTTCEEEECS--H
T ss_pred CcceeEEEEEEecc-hhhccccccccccccccccccccCHHHHHHHHHH-cCCcccccCCccccchhhhccCCCCCh--H
Confidence 111245565542 100 0000 000 0000001356788898866 6999999955421 2111100 111 1
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 479 SYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 479 ~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+..+ ....+|+++++++|++|+++++++|++++..+
T Consensus 352 ~~~~-----------~~~~~~~~~~~~~t~edi~~~~~~l~~~~~~~ 387 (394)
T 1o69_A 352 SELF-----------FQKGICLPSGTAMSKDDVYEISKLILKSIKAG 387 (394)
T ss_dssp HHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred HHHH-----------hcCeEEccCCCCCCHHHHHHHHHHHHHHHhcc
Confidence 1111 02456777799999999999999999987665
|
| >2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-26 Score=244.64 Aligned_cols=198 Identities=15% Similarity=0.134 Sum_probs=155.3
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
.+.|.|+.+.....+.+.+++.. +.+.+.. +..+........++++++++++|.+ + .+++ ++|+ +++..+
T Consensus 26 ~~~~~d~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~-~-~i~~-~sG~-~a~~~~ 95 (398)
T 2rfv_A 26 ALSTPIFQTSTFVFDSAEQGAAR-----FALEESG-YIYTRLGNPTTDALEKKLAVLERGE-A-GLAT-ASGI-SAITTT 95 (398)
T ss_dssp CSSCCCCCCSBCCCSSHHHHHHH-----C-----C-CSBTTTCCHHHHHHHHHHHHHHTCS-E-EEEE-SSHH-HHHHHH
T ss_pred CcCCCCcCCCccccCCHHHHHHh-----hcCCCCC-CceeCCCChHHHHHHHHHHHHhCCC-c-EEEE-CCHH-HHHHHH
Confidence 45677888888777777776652 2233222 2233334567889999999999986 2 4544 4788 678887
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
+..+ +++|| .|+++..+|+++...+ +..|++++.++.+ |+++|+++++ +
T Consensus 96 l~~~---------------~~~gd--~vi~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~ 148 (398)
T 2rfv_A 96 LLTL---------------CQQGD--HIVSASAIYGCTHAFLSHSMPKFGINVRFVDAA-----KPEEIRAAMR-----P 148 (398)
T ss_dssp HHHH---------------CCTTC--EEEEESSSCHHHHHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCC-----T
T ss_pred HHHH---------------hCCCC--EEEEcCCCcccHHHHHHHHHHHcCCEEEEeCCC-----CHHHHHHhcC-----C
Confidence 7765 36888 6999999999998877 6789999999875 8999999998 5
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEE
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILL 310 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~ 310 (609)
+++++++++++||||.+.|+++|+++|++||+++|+|++++.+...... .. +.|+++.|+||+++||++ .|+++
T Consensus 149 ~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~-~~---~~di~~~s~sK~~~~~g~~~~G~~~ 224 (398)
T 2rfv_A 149 ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQPL-QL---GADIVVHSVTKYINGHGDVIGGIIV 224 (398)
T ss_dssp TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEE
T ss_pred CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCCch-hh---CCcEEEEeCcccccCCCCceEEEEE
Confidence 8999999999999999999999999999999999999999876543222 22 689999999999998876 59999
Q ss_pred Eechh
Q 038499 311 MTKAL 315 (609)
Q Consensus 311 ~~~~~ 315 (609)
+++++
T Consensus 225 ~~~~~ 229 (398)
T 2rfv_A 225 GKQEF 229 (398)
T ss_dssp ECHHH
T ss_pred ECHHH
Confidence 99887
|
| >3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=242.80 Aligned_cols=348 Identities=10% Similarity=0.011 Sum_probs=230.5
Q ss_pred CccccCCCCCCceEEecCCCC-CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcE
Q 038499 66 NAEFDSPFGKRRLTYADHTAS-GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAM 142 (609)
Q Consensus 66 ~~~~~~p~g~~~~vyld~~a~-g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~v 142 (609)
+.++.+..|+ +++.+..+.. .+.++.|.+++.+.+... .+. +.. .. .++++.+.+.+.+.+| .+++ +|
T Consensus 14 g~~~~d~~g~-~~idl~~~~~~~~~~~~v~~a~~~~~~~~---~~~--y~~-~~-~~lr~~la~~~~~~~~~~~~~~-~i 84 (377)
T 3fdb_A 14 NTMKWTRYGQ-GVLPLWVAESDFSTCPAVLQAITDAVQRE---AFG--YQP-DG-SLLSQATAEFYADRYGYQARPE-WI 84 (377)
T ss_dssp CCHHHHSSCT-TSEECCSSCCCSCCCHHHHHHHHHHHHTT---CCS--SCC-SS-CCHHHHHHHHHHHHHCCCCCGG-GE
T ss_pred CCceeeccCC-CeeeecccCCCCCCCHHHHHHHHHHHHcC---CCC--CCC-CC-HHHHHHHHHHHHHHhCCCCCHH-HE
Confidence 3444444554 5666665543 246788999998877541 010 111 11 2233333444444444 5555 89
Q ss_pred EEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHH
Q 038499 143 IFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALR 222 (609)
Q Consensus 143 ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~ 222 (609)
++| +|+++++..++..+ +++|| .|++..+.|+++...++..|++++.++.+.+ +|+++|+
T Consensus 85 ~~t-~g~~~a~~~~~~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~d~~~l~ 144 (377)
T 3fdb_A 85 FPI-PDVVRGLYIAIDHF---------------TPAQS--KVIVPTPAYPPFFHLLSATQREGIFIDATGG--INLHDVE 144 (377)
T ss_dssp EEE-SCHHHHHHHHHHHH---------------SCTTC--CEEEEESCCTHHHHHHHHHTCCEEEEECTTS--CCHHHHH
T ss_pred EEe-CChHHHHHHHHHHh---------------cCCCC--EEEEcCCCcHhHHHHHHHcCCEEEEccCCCC--CCHHHHH
Confidence 998 78888899888876 37888 5889999999999889999999999999876 9999999
Q ss_pred HHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc-----ccccCCCCCCCCccEEEE
Q 038499 223 SKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY-----VEIDVRSGQTDGYDAIFL 294 (609)
Q Consensus 223 ~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~-----~~id~~~~~~~~~D~v~~ 294 (609)
++++ ++++++++++++||||.+.| +++|+++|++||+++|+|++++... ...++......+.++++.
T Consensus 145 ~~l~-----~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 219 (377)
T 3fdb_A 145 KGFQ-----AGARSILLCNPYNPLGMVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITIT 219 (377)
T ss_dssp HHHH-----TTCCEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEE
T ss_pred HHhc-----cCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEE
Confidence 9998 56899999999999999986 5667778999999999999987522 222332210113458889
Q ss_pred cCCCCCCCCC-CcEEEEE-echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHH
Q 038499 295 STHKFLGGPG-SPGILLM-TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK 372 (609)
Q Consensus 295 S~hK~lggp~-g~G~L~~-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~ 372 (609)
|+||++|.|+ ++|++++ ++++. +.+... .. ....+++......+...+. .
T Consensus 220 s~sK~~g~~G~r~G~~~~~~~~~~--~~~~~~------------------------~~-~~~~~~~~~~~~a~~~~l~-~ 271 (377)
T 3fdb_A 220 APSKAWNIAGLKCAQIIFSNPSDA--EHWQQL------------------------SP-VIKDGASTLGLIAAEAAYR-Y 271 (377)
T ss_dssp CSTTTTTCGGGCCEEEECCSHHHH--HHHHHS------------------------CH-HHHCCCCHHHHHHHHHHHH-H
T ss_pred eChHhccCcchhheEEEeCCHHHH--HHHHHH------------------------HH-hhcCCCCHHHHHHHHHHHh-c
Confidence 9999997443 4898887 45552 221110 00 0112223333222111111 1
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHhCC-CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 038499 373 EYIGHEVIKKQEETYIERALERLLP-NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLND 451 (609)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~~~~~L~~-~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 451 (609)
.....+.+.++.+++++++.+.|++ +|++++..+ ..+++.+...+ .. + .. .++.+.|.+
T Consensus 272 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~----~~~~~~~~~~~-~~------------~--~~-~~~~~~l~~ 331 (377)
T 3fdb_A 272 GTDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITPM----QATYLMWIDFR-DT------------T--IE-GSPSEFFIE 331 (377)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECCC----SBCSEEEEECT-TS------------C--CC-SCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecC----CeeEEEEEECc-cc------------C--CC-HHHHHHHHH
Confidence 1223567788888899999999987 789998765 23444433333 10 0 12 346666667
Q ss_pred hcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 452 LFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 452 ~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
++||.+++|..|..+ .++++|||++ .++++++.++++|++++++
T Consensus 332 ~~gi~v~~g~~~~~~---------------------------~~~~~Ris~~--~~~e~i~~~l~~l~~~l~~ 375 (377)
T 3fdb_A 332 KAKVAMNDGAWFGED---------------------------GTGFCRLNFA--TSREVLEEAIDRMAKAVSH 375 (377)
T ss_dssp HHCEECEEGGGGCGG---------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred hCCEEecCChhccCC---------------------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHhh
Confidence 679999999887632 1589999998 4899999999999988754
|
| >3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=238.81 Aligned_cols=338 Identities=12% Similarity=-0.005 Sum_probs=224.8
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal 153 (609)
+++.|+.+... +.++.|.+++.+.+.... . .|....+..++++.+.+.+.+.+| ++++ +|++| +|+++++
T Consensus 32 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~----~-~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~-~v~~t-~g~~~al 104 (391)
T 3h14_A 32 RIIHMEVGQPGTGAPRGAVEALAKSLETDA----L-GYTVALGLPALRQRIARLYGEWYGVDLDPG-RVVIT-PGSSGGF 104 (391)
T ss_dssp CCEECCCSSCSSCSCHHHHHHHHHHHC---------------CCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SSHHHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcCC----C-CCCCCCChHHHHHHHHHHHHHHhCCCCCHH-HEEEe-cChHHHH
Confidence 45666655443 346678888888775310 0 011111123344444444444445 4555 89998 7788889
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhhccC
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELYKDA 231 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~~~~ 231 (609)
..++..+ +++|| .|++..+.|+++...++..|++++.++.+++ ..+|+++|+++
T Consensus 105 ~~~~~~l---------------~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~------- 160 (391)
T 3h14_A 105 LLAFTAL---------------FDSGD--RVGIGAPGYPSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL------- 160 (391)
T ss_dssp HHHHHHH---------------CCTTC--EEEEEESCCHHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS-------
T ss_pred HHHHHHh---------------cCCCC--EEEEcCCCCccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc-------
Confidence 9888776 37888 6999999999999999999999999999864 36799988654
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc---cccCCCCCCCCccEEEEcCCCCCCC-CC
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---EIDVRSGQTDGYDAIFLSTHKFLGG-PG 304 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~id~~~~~~~~~D~v~~S~hK~lgg-p~ 304 (609)
+++++++++++||||.+.| +++|+++|++||+++|+|++++.... +..+... .+.++++.|++|++|. +.
T Consensus 161 -~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~--~~~~i~~~s~sK~~g~~G~ 237 (391)
T 3h14_A 161 -DLAGLMVASPANPTGTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAKAVTALEL--TDECYVINSFSKYFSMTGW 237 (391)
T ss_dssp -CCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGT--CSSSEEEEESSSTTCCTTS
T ss_pred -CCeEEEECCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCCCcChhhc--CCCEEEEEechhccCCccc
Confidence 4789999999999999998 78899999999999999999875321 1222211 2457888899999973 34
Q ss_pred CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 038499 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQE 384 (609)
Q Consensus 305 g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~ 384 (609)
++|++++++++. +.+... .+....+++......+...+. .....+.+.++.
T Consensus 238 r~G~~~~~~~~~--~~~~~~-------------------------~~~~~~~~~~~~~~a~~~~l~--~~~~~~~~~~~~ 288 (391)
T 3h14_A 238 RVGWMVVPEDQV--RVVERI-------------------------AQNMFICAPHASQVAALAALD--CDAELQANLDVY 288 (391)
T ss_dssp CCEEEECCGGGH--HHHHHH-------------------------HHHTTCCCCHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred eeEEEEeCHHHH--HHHHHH-------------------------HhhhccCCCHHHHHHHHHHhC--ChHHHHHHHHHH
Confidence 589999988872 222110 111122333333221111111 223456777888
Q ss_pred HHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 385 ETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 385 ~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
+++++++.+.|++++...+..+ ..+.+.+...+ .. ..+...+++.|.+++||.+++|..|.
T Consensus 289 ~~~~~~l~~~l~~~~~~~~~~~----~~~~~~~~~~~-~~--------------~~~~~~~~~~l~~~~gi~v~~g~~~~ 349 (391)
T 3h14_A 289 KANRKLMLERLPKAGFTRIAPP----DGAFYVYADVS-DL--------------TDDSRAFAAEILEKAGVAVTPGLDFD 349 (391)
T ss_dssp HHHHHHHHHHHHHHTCCCBCCC----CBTTEEEEECT-TT--------------CSCHHHHHHHHHHHHCEECEEGGGTC
T ss_pred HHHHHHHHHHHHHcCCCcccCC----CeeEEEEEecC-cc--------------CCCHHHHHHHHHHHCCEEEcCchhhC
Confidence 8888999998887633222222 23444444333 10 13577888887776799999998887
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+. .++++||+++. ++++++.++++|++++++
T Consensus 350 ~~~--------------------------~~~~iRis~~~--~~~~i~~~l~~l~~~~~~ 381 (391)
T 3h14_A 350 PER--------------------------GAGTLRFSYAR--ATADIEEGLDRLEAFMQA 381 (391)
T ss_dssp TTT--------------------------GGGEEEEECCS--CHHHHHHHHHHHHHHHHH
T ss_pred CCC--------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHHHH
Confidence 321 14899999985 889999999999998875
|
| >3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.4e-26 Score=242.64 Aligned_cols=350 Identities=12% Similarity=0.027 Sum_probs=232.3
Q ss_pred ecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHh
Q 038499 81 ADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVM 160 (609)
Q Consensus 81 ld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l 160 (609)
+|...+.+....+.+++.+.+... . +. ......++++.+++++|.+ +++++++|+. ++..++..+
T Consensus 9 ~~l~~~~~~~~~~~~~~~~~~~~~----~---~~----~~~~~~~l~~~la~~~~~~---~~~~~~~gt~-a~~~~~~~~ 73 (374)
T 3uwc_A 9 SYLERQFADIEPYLNDLREFIKTA----D---FT----LGAELEKFEKRFAALHNAP---HAIGVGTGTD-ALAMSFKML 73 (374)
T ss_dssp CCHHHHTSSCHHHHHHHHHHHHHT----C---CS----SCHHHHHHHHHHHHHTTCS---EEEEESCHHH-HHHHHHHHT
T ss_pred eccccCCCCchHHHHHHHHHHHcC----C---cc----cChhHHHHHHHHHHHhCCC---cEEEeCCHHH-HHHHHHHHc
Confidence 333333333333777777655421 1 11 1234678999999999986 5788867755 677777766
Q ss_pred cccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEe
Q 038499 161 GIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFS 240 (609)
Q Consensus 161 ~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s 240 (609)
+ +++|| .|+++.++|+++...++..|++++.++.+.++.+|+++|+++++ +++++++
T Consensus 74 ~--------------~~~gd--~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~-- 130 (374)
T 3uwc_A 74 N--------------IGAGD--EVITCANTFIASVGAIVQAGATPVLVDSENGYVIDPEKIEAAIT-----DKTKAIM-- 130 (374)
T ss_dssp T--------------CCTTC--EEEEESSSCHHHHHHHHHTTCEEEEECBCTTSSBCGGGTGGGCC-----TTEEEEC--
T ss_pred C--------------CCCCC--EEEECCCccHHHHHHHHHcCCEEEEEecCCCCCcCHHHHHHhCC-----CCceEEE--
Confidence 3 36888 69999999999999999999999999998888899999999987 5788766
Q ss_pred cccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCC--CCCCCCCCcEEEEEechhhcc
Q 038499 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTH--KFLGGPGSPGILLMTKALYQL 318 (609)
Q Consensus 241 ~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~h--K~lggp~g~G~L~~~~~~~~l 318 (609)
++||||.+.|+++|.++|++||+++|+|++++.+.. ++..... ...|++++|+| |++++++..|+++.+++.. .
T Consensus 131 -~~n~~G~~~~~~~i~~~~~~~~~~li~D~~~~~g~~-~~~~~~~-~~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~-~ 206 (374)
T 3uwc_A 131 -PVHYTGNIADMPALAKIAKKHNLHIVEDACQTILGR-INDKFVG-SWGQFACFSLHPLKNLNVWSDAGVIITHSDEY-A 206 (374)
T ss_dssp -CBCGGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETT-SSSSEEEEECSSSSSSCCSSCCEEEEESCHHH-H
T ss_pred -EeCCcCCcCCHHHHHHHHHHcCCEEEEeCCCccCce-eCCeecc-ccccEEEEeCCCCCcCCccceeEEEEeCCHHH-H
Confidence 889999999999999999999999999999987654 3333321 12599999977 9998745468888776431 1
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCC-hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT-PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt-p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
+.+.+...++....+ . . ...+. ..+.. +.+++.+. ...+.+.+.++.+++.+++.+.|++
T Consensus 207 ~~~~~~~~~~~~~~~-----------~----~-~~~~~~~~~~~-~~aa~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~ 267 (374)
T 3uwc_A 207 EKLRLYRNHGLINRD-----------V----C-VEYGINCRMDT-IQAVIANR--LMNQLETITEKRRGIAHLYDQSFVD 267 (374)
T ss_dssp HHHHHHTBTTEEETT-----------E----E-SSCCCBCBCCH-HHHHHHHH--HGGGHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHHHHHHhcCccccC-----------c----c-ccccccCCCCH-HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 222222222211000 0 0 00111 11111 22232322 3446778888999999999999999
Q ss_pred CCc-eEEeCCCCCCCcce-EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCc----ccCChhhhhh
Q 038499 398 NQN-IKILGNTSTKRQAI-LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGC----ACAGPYGHHL 471 (609)
Q Consensus 398 ~p~-i~v~~~~~~~r~~~-~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~----~ca~p~~~~l 471 (609)
+++ +++..... .+.+. +.|.+.. .+...+.+.|.+ .||.+++|. .|.+++..
T Consensus 268 ~~~~~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~l~~~L~~-~gi~v~~~~~~~~~~~~~~~~-- 325 (374)
T 3uwc_A 268 LSEFIDVPVRRE-GVYHVFHIYVLRV------------------KYRDQLFQYLKD-NGIEVKIHYPIAMHLQPAAKS-- 325 (374)
T ss_dssp GTTTEECCCCCT-TEECCCSSEEEEE------------------TTHHHHHHHHHH-TTBCCBCSCSSCGGGSGGGGG--
T ss_pred CCCeEEeccCCC-CCceeeEEEEEEc------------------CCHHHHHHHHHH-CCCccccCCCCccccChhhhh--
Confidence 887 87754321 12222 2333333 146788888866 599999885 33222211
Q ss_pred cCC---ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 472 LDL---DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 472 l~i---~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
++. ..+.+..+ ..+.+||+++.++|++|+++++++|++++++
T Consensus 326 ~~~~~~~~~~~~~~-----------~~~~lrl~~~~~~t~edi~~~~~~l~~~l~~ 370 (374)
T 3uwc_A 326 LGYQQGDFPMAEKH-----------GEAVITLPAHPYLTEEEINYIIKKVREFYLE 370 (374)
T ss_dssp GCCCTTSCHHHHHH-----------HHHEEEECCCTTSCHHHHHHHHHHHHHHHHT
T ss_pred cCCccCCCccHHHH-----------HhCEEEccCCCCCCHHHHHHHHHHHHHHHHh
Confidence 111 01111111 1378999999999999999999999999875
|
| >2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.1e-25 Score=241.78 Aligned_cols=373 Identities=11% Similarity=0.039 Sum_probs=234.1
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
+.++.+.+++.+.+... +.+......| ..++.+++++.+++++|.+ +++++++|+ +++..++..++
T Consensus 13 ~~~~~~~~a~~~~~~~~--~~~~~~~~~g--~~~l~~~l~~~la~~~g~~---~~i~~~~gt-~al~~~~~~~~------ 78 (418)
T 2c81_A 13 QHSDRTRRKIEEVFQSN--RWAISGYWTG--EESMERKFAKAFADFNGVP---YCVPTTSGS-TALMLALEALG------ 78 (418)
T ss_dssp CCCHHHHHHHHHHHHHT--CCSTTSBCCS--SCCHHHHHHHHHHHHHTCS---EEEEESCHH-HHHHHHHHHTT------
T ss_pred CCCHHHHHHHHHHHhcC--CccccCcccC--CHHHHHHHHHHHHHHhCCC---cEEEeCCHH-HHHHHHHHHcC------
Confidence 45678888888877542 2211101112 2456788999999999986 456676775 67888887763
Q ss_pred HHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCcc
Q 038499 168 LREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVT 246 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~T 246 (609)
+++|| .|+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++|+++ |+|
T Consensus 79 --------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~---~~~ 140 (418)
T 2c81_A 79 --------IGEGD--EVIVPSLTWIATATAVLNVNALPVFVDVEADTYCIDPQLIKSAIT-----DKTKAIIPV---HLF 140 (418)
T ss_dssp --------CCTTC--EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHGGGCC-----TTEEEECCB---CCT
T ss_pred --------CCCcC--EEEECCCccHhHHHHHHHcCCEEEEEecCCCCCCcCHHHHHHhhC-----CCCeEEEEe---CCc
Confidence 36888 699999999999999999999999999986 78899999999997 578887754 589
Q ss_pred ccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCC-CCCccEEEEcCCCCCCCCCCcEEEEEe-chhhccCCCCCC
Q 038499 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQ-TDGYDAIFLSTHKFLGGPGSPGILLMT-KALYQLGSFPPS 324 (609)
Q Consensus 247 G~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~-~~~~D~v~~S~hK~lggp~g~G~L~~~-~~~~~l~~~~p~ 324 (609)
|...|+++|.++|++||+++|+|++++.+.. .+..... ...+++.++|+||++|+ +..|+++.+ +++ ++.+.+.
T Consensus 141 G~~~~~~~i~~~~~~~~~~li~D~a~~~~~~-~~~~~~~~~~~~~~~s~s~~K~~~~-g~~g~~~~~~~~l--~~~~~~~ 216 (418)
T 2c81_A 141 GSMANMDEINEIAQEHNLFVIEDCAQSHGSV-WNNQRAGTIGDIGAFSCQQGKVLTA-GEGGIIVTKNPRL--FELIQQL 216 (418)
T ss_dssp TCCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETTSSSSEEEEECCTTSSSCS-SSCEEEEESCHHH--HHHHHHH
T ss_pred CCcccHHHHHHHHHHCCCEEEEECcccccCc-cCCEecccccceEEEeccCCcccCC-CCeEEEEECCHHH--HHHHHHH
Confidence 9999999999999999999999999998753 2211111 11234444455999986 467888885 455 2223222
Q ss_pred ccCCCceEeecccccc-cccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 038499 325 TCGGGTVNYVNGFNEK-DTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKI 403 (609)
Q Consensus 325 ~~ggg~v~~~~~~~~~-~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v 403 (609)
..++..... +... ...|.+........|....+..+.+++... ...+.+.+.++.+++++++.+.|.++|++++
T Consensus 217 ~~~~~~~~~---~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~--~l~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 291 (418)
T 2c81_A 217 RADSRVYCD---DSSELMHGDMQLVKKGDIQGSNYCLSEFQSAILLD--QLQELDDKNAIREKNAMFLNDALSKIDGIKV 291 (418)
T ss_dssp HBTTEEECS---CGGGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTSTTEEE
T ss_pred HHhCccccc---cccccccchhhccccccccCcCCCcCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 222221000 0000 000100000000011100001112222221 2335677888888899999999999999998
Q ss_pred eCCCCC--CCc-ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcE---eccCcccCChh-hhhhcCC--
Q 038499 404 LGNTST--KRQ-AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQ---ARGGCACAGPY-GHHLLDL-- 474 (609)
Q Consensus 404 ~~~~~~--~r~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~---v~~G~~ca~p~-~~~ll~i-- 474 (609)
..+... ... .++.+.+.. .. ....+...+.+.|.+++||. ++.|+.|.... .+.-++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~-~~------------~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~ 358 (418)
T 2c81_A 292 MKRPPQVSRQTYYGYVFRFDP-VK------------FGGLNADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNR 358 (418)
T ss_dssp CCCCTTEEECCCSEEEEEECG-GG------------TTTCCHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTT
T ss_pred CCCCCCCcccccEEEEEEEcc-cc------------ccccCHHHHHHHHHHcCCCCcccccccccccccCchhccccccc
Confidence 854321 112 234444431 00 00146788999997766999 99887443100 0000000
Q ss_pred ---------------ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCC-CHHHHHHHHHHHHHHHHhc
Q 038499 475 ---------------DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYM-SNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 475 ---------------~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~-t~eeid~ll~al~~v~~~~ 525 (609)
..+.++.+ ..+.+||+++.++ |++|+++++++|++++++.
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~~~ 414 (418)
T 2c81_A 359 YLKSVRKTEAYWRGLHYPVSERA-----------SGQSIVIHHAILLAEPSHLSLLVDAVAELARKF 414 (418)
T ss_dssp SCHHHHCCHHHHHTCCCHHHHHH-----------HHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHTT
T ss_pred ccccccccccccccCCChHHHHH-----------HhCEEEecCCccCCCHHHHHHHHHHHHHHHHhh
Confidence 11111111 1379999999999 9999999999999988753
|
| >1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=9.1e-26 Score=241.14 Aligned_cols=341 Identities=14% Similarity=0.163 Sum_probs=212.5
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
+.-.|+.+++...+.+.+++. .++|+... +..++.......++++.+++++|.+ + .+++ ++|+ +++..++
T Consensus 28 ~~~p~~~~~~~~~~~~~~~~~-----~~~~~~~~-~~~~r~~~~~~~~l~~~la~~~g~~-~-~i~~-~sG~-~a~~~~l 97 (398)
T 1gc0_A 28 LVPPVYQTATFTFPTVEYGAA-----CFAGEQAG-HFYSRISNPTLNLLEARMASLEGGE-A-GLAL-ASGM-GAITSTL 97 (398)
T ss_dssp SSCCBCCCSCBCCC---------------------------CCHHHHHHHHHHHHHHTCS-E-EEEE-SSHH-HHHHHHH
T ss_pred cCCCccCCCccccCCHHHHHH-----hhcCCcCC-CcccCCCChHHHHHHHHHHHHhCCC-c-EEEE-CCHH-HHHHHHH
Confidence 334567777776666655553 13444332 3334445567889999999999986 2 4555 4886 6788887
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCC
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~ 233 (609)
..+ +++|| .|+++..+|+++...+ +..|++++.++.+ |+++|+++++ ++
T Consensus 98 ~~~---------------~~~gd--~vl~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-----d~~~l~~~i~-----~~ 150 (398)
T 1gc0_A 98 WTL---------------LRPGD--EVLLGNTLYGCTFAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMT-----PA 150 (398)
T ss_dssp HHH---------------CCTTC--EEEEESSCCSHHHHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC-----TT
T ss_pred HHH---------------hcCCC--EEEEeCCCchhHHHHHHHHHHHcCCEEEEECCC-----CHHHHHHhcC-----CC
Confidence 765 36788 6999999999988877 5579999999864 8999999998 58
Q ss_pred ceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEE
Q 038499 234 PILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLM 311 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~ 311 (609)
++++++++++||||.+.|+++|+++|++||+++|+|++++.+.....+. .++|+++.|+||++|||++ .|++++
T Consensus 151 ~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~~~~----~~~d~~~~S~sK~~~~~~~~~~G~l~~ 226 (398)
T 1gc0_A 151 TRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQRPLE----LGADLVVHSATKYLSGHGDITAGIVVG 226 (398)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCCGGG----GTCSEEEEETTTTTTCSSSCCCEEEEE
T ss_pred CeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCCchh----hCceEEEECCccccCCCCCCeEEEEEE
Confidence 9999999999999999999999999999999999999998765433332 2689999999999998876 599999
Q ss_pred echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
+++... ..+.+.. .....++.+...... ++..+ ...+...++..+.++++
T Consensus 227 ~~~~~~-~~~~~~~------------------------~~~~~~~~~~~~~~~-~~~~l----~~~~~~~~~~~~~~~~l 276 (398)
T 1gc0_A 227 SQALVD-RIRLQGL------------------------KDMTGAVLSPHDAAL-LMRGI----KTLNLRMDRHCANAQVL 276 (398)
T ss_dssp CHHHHH-HHHHTHH------------------------HHHTCCCCCHHHHHH-HHHHH----TTHHHHHHHHHHHHHHH
T ss_pred ChHHHH-HHHHHHh------------------------hccCCCCCCHHHHHH-HHhcc----chHHHHHHHHHHHHHHH
Confidence 887621 0111110 000123333222211 11111 12334445555666666
Q ss_pred HHHhCCCCceE--------------EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEe
Q 038499 392 LERLLPNQNIK--------------ILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA 457 (609)
Q Consensus 392 ~~~L~~~p~i~--------------v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v 457 (609)
.+.|.+++++. ++++......++++|.+.. ....+.+.| +..+|.+
T Consensus 277 ~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-------------------~~~~~~~~l-~~~~i~~ 336 (398)
T 1gc0_A 277 AEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-------------------GIGAGRRFM-NALQLFS 336 (398)
T ss_dssp HHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-------------------HHHHHHHHH-HHCSSSE
T ss_pred HHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-------------------CHHHHHHHH-HhCCCce
Confidence 66666655443 3322111256778886654 134455656 4468877
Q ss_pred cc---Ccc------cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 458 RG---GCA------CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 458 ~~---G~~------ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+. |+. |+.. .|. .+....-. ..|+.+++||||++..+++++++.+.++|+++
T Consensus 337 ~~~s~G~~~sl~~~~~~~-~~~--~~~~~~~~---------~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~ 397 (398)
T 1gc0_A 337 RAVSLGDAESLAQHPASM-THS--SYTPEERA---------HYGISEGLVRLSVGLEDIDDLLADVQQALKAS 397 (398)
T ss_dssp ECSCCSCSSCEEECGGGT-TTS--SSCHHHHH---------HTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred eccCCCCcceeeeccccc-ccc--cCCHHHHH---------hcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence 65 532 3210 110 11100000 12344699999999999999999999999875
|
| >1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=238.89 Aligned_cols=346 Identities=14% Similarity=0.075 Sum_probs=228.3
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHH
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILR 169 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (609)
.+.+.+++.+.+... +.. +.. .....++++.+++++|.+ ++|+++ +| +++++.++..++
T Consensus 16 ~~~~~~a~~~~l~~~--~~~---~~~----~~~~~~l~~~la~~~~~~--~~i~~~-sG-t~al~~~l~~l~-------- 74 (388)
T 1b9h_A 16 DDAERNGLVRALEQG--QWW---RMG----GDEVNSFEREFAAHHGAA--HALAVT-NG-THALELALQVMG-------- 74 (388)
T ss_dssp CHHHHHHHHHHHHTS--CCB---TTT----CSHHHHHHHHHHHHTTCS--EEEEES-CH-HHHHHHHHHHTT--------
T ss_pred CHHHHHHHHHHHHcC--Cee---ecC----CHHHHHHHHHHHHHhCCC--eEEEeC-CH-HHHHHHHHHHcC--------
Confidence 377888888877531 111 111 234678999999999986 356665 88 578888888763
Q ss_pred HHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCcccc
Q 038499 170 EKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGI 248 (609)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~ 248 (609)
+++|| .|+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++|+ ++|+||.
T Consensus 75 ------~~~gd--~Vi~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~v~---~~n~tG~ 138 (388)
T 1b9h_A 75 ------VGPGT--EVIVPAFTFISSSQAAQRLGAVTVPVDVDAATYNLDPEAVAAAVT-----PRTKVIM---PVHMAGL 138 (388)
T ss_dssp ------CCTTC--EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC-----TTEEEEC---CBCGGGC
T ss_pred ------CCCcC--EEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCCCHHHHHHhcC-----cCceEEE---EeCCccC
Confidence 36888 699999999999999999999999999987 47899999999997 5788766 8899999
Q ss_pred ccCHHHHHHHHHHhCCeEEEeccccCCccc--ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhh-ccCCCCCCc
Q 038499 249 YSDTRSIARLLHQYGGFACFDFAASGPYVE--IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALY-QLGSFPPST 325 (609)
Q Consensus 249 ~~dl~~I~~la~~~g~~vivD~A~~~~~~~--id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~-~l~~~~p~~ 325 (609)
+.|+++|.++|++||+++|+|++++.+... .++..+ ..+++.++|.||+++|+. .|+++++++.. .++.+...
T Consensus 139 ~~~l~~i~~la~~~~~~li~D~a~~~g~~~~~~~~~~~--~~i~~~S~s~~K~l~g~~-~G~~~~~~~~~~~~~~~~~~- 214 (388)
T 1b9h_A 139 MADMDALAKISADTGVPLLQDAAHAHGARWQGKRVGEL--DSIATFSFQNGKLMTAGE-GGAVVFPDGETEKYETAFLR- 214 (388)
T ss_dssp CCCHHHHHHHHHHHTCCBCEECTTCTTCEETTEEGGGS--SSCEEEECCTTSSSCSSS-CEEEEECTTCHHHHHHHHHH-
T ss_pred cCCHHHHHHHHHHcCCEEEEecchhcCCccCCeecccc--cceEEEEccCCCcccCCC-eEEEEECCHHHHHHHHHHHH-
Confidence 999999999999999999999999876544 333332 125666667889998765 59999887631 00111111
Q ss_pred cCCCceEeecccccccccccccccccccCCC---hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE
Q 038499 326 CGGGTVNYVNGFNEKDTLYLEDIEERESGGT---PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK 402 (609)
Q Consensus 326 ~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt---p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~ 402 (609)
.+++. ......| .....|+ .+..+. +++. .....++...++.+++++++.+.|+++|+++
T Consensus 215 ~~~~~-------~~~~~~~-----~~~~~g~~~~~~~~~~--a~~~---~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~ 277 (388)
T 1b9h_A 215 HSCGR-------PRDDRRY-----FHKIAGSNMRLNEFSA--SVLR---AQLARLDEQIAVRDERWTLLSRLLGAIDGVV 277 (388)
T ss_dssp TBTTC-------CTTCSSC-----CCCSCCCBCBCBHHHH--HHHH---HHHTTHHHHHHHHHHHHHHHHHHHHTSTTCE
T ss_pred HhCCC-------CccCccc-----eeecccccCCcCHHHH--HHHH---HHHHHHHHHHHHHHHHHHHHHHHhccCCCcc
Confidence 11111 0000000 0012233 232222 1111 1122456677777888999999999999998
Q ss_pred EeCCCCC--CC-cceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh-----cCC
Q 038499 403 ILGNTST--KR-QAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL-----LDL 474 (609)
Q Consensus 403 v~~~~~~--~r-~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l-----l~i 474 (609)
+..+... +. ..++++.+.. .. ..+...+.+.|.+ .||.++.+.... |.+ ++.
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~-~~--------------~~~~~~l~~~L~~-~gI~v~~~~~~~----~~~~~~~~~~~ 337 (388)
T 1b9h_A 278 PQGGDVRADRNSHYMAMFRIPG-LT--------------EERRNALVDRLVE-AGLPAFAAFRAI----YRTDAFWELGA 337 (388)
T ss_dssp ECCCCTTCCBCCCSEEEEECTT-CC--------------HHHHHHHHHHHHH-TTCCEEECCCCG----GGSHHHHHSSC
T ss_pred ccCCCcCCCccceEEEEEEeCC-cC--------------cccHHHHHHHHHH-CCCCcccccCcc----ccChHhHhcCC
Confidence 8764221 12 2345554432 10 0135678888866 599998764321 111 111
Q ss_pred Ch----------hHHHHHHHHHhhCCCCCCCcEEEEecCCCC-CHHHHHHHHHHHHHHHHh
Q 038499 475 DE----------AQSYQIRSAIQKGYVGVKPGWTRISFPYYM-SNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 475 ~~----------~~~~~~~~~~~~~~~~~~~g~iRls~~~~~-t~eeid~ll~al~~v~~~ 524 (609)
.. +.+..+ ..+.+||+++..+ |++|+++++++|++++++
T Consensus 338 ~~~~~~~~~~~~~~~~~~-----------~~~~l~l~~~~~~~t~edi~~~~~~l~~~~~~ 387 (388)
T 1b9h_A 338 PDESVDAIARRCPNTDAI-----------SSDCVWLHHRVLLAGEPELHATAEIIADAVAR 387 (388)
T ss_dssp CSSCHHHHHHTCHHHHHH-----------HHHEEEEEGGGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CcccccccccCCHHHHHH-----------HhCeEEecCCCCCCCHHHHHHHHHHHHHHHhh
Confidence 10 111111 1368999999999 999999999999998764
|
| >2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-26 Score=245.47 Aligned_cols=338 Identities=12% Similarity=0.020 Sum_probs=228.2
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----CCC--CCCcEEEeCChH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----GGG--QEDAMIFCGSGT 149 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g~~--~~~~vift~sGt 149 (609)
.++.|+.+... ..++.+.+++.+.+... ..+. |..... ..++++.+++++ |.+ ++++|++| +|+
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~--~~~~--y~~~~g----~~~lr~~ia~~~~~~~g~~~~~~~~v~~t-~G~ 118 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIP--ENQK--YGAFHG----KEAFKQAIVDFYQRQYNVTLDKEDEVCIL-YGT 118 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCH--HHHS--CCCTTC----CHHHHHHHHHHHHHHHCCCCCTTTSEEEE-SSH
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCC--CCCC--CCCCCC----CHHHHHHHHHHHHHHhCCCCCCcccEEEc-CCc
Confidence 45666655443 24677888888776431 0000 111011 234555555555 875 22389998 788
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC-CCCCHHHHHHHHhhh
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD-GLLDIEALRSKLELY 228 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-g~ld~e~L~~al~~~ 228 (609)
++++..++.++ +++|| .|++..+.|+++...++..|++++.++.+++ ..+|+++|+++++
T Consensus 119 ~~al~~~~~~l---------------~~~gd--~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-- 179 (404)
T 2o1b_A 119 KNGLVAVPTCV---------------INPGD--YVLLPDPGYTDYLAGVLLADGKPVPLNLEPPHYLPDWSKVDSQII-- 179 (404)
T ss_dssp HHHHHHHHHHH---------------CCTTC--EEEEEESCCSSHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH--
T ss_pred HHHHHHHHHHh---------------cCCCC--EEEEcCCCchhHHHHHHHCCCEEEEeccCcccCcCCHHHHHHhhc--
Confidence 88899888876 36788 6899999999999889999999999998863 3589999999997
Q ss_pred ccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc---cccCCCCC-CCCccEEEEcCCCCCC
Q 038499 229 KDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---EIDVRSGQ-TDGYDAIFLSTHKFLG 301 (609)
Q Consensus 229 ~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~id~~~~~-~~~~D~v~~S~hK~lg 301 (609)
++++++++++++||||.+.| +++|+++|++||+++|+|++++.... +.++.... ..+.|+++.|+||++|
T Consensus 180 ---~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g 256 (404)
T 2o1b_A 180 ---DKTKLIYLTYPNNPTGSTATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDAKNPSILASENGKDVAIEIYSLSKGYN 256 (404)
T ss_dssp ---HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSSCCCCGGGSTTHHHHEEEEEESTTTTT
T ss_pred ---cCceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCCEEEEEecchhcc
Confidence 46899999999999999986 67899999999999999999876432 22222221 1145789999999997
Q ss_pred CCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHHH
Q 038499 302 GPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHEV 379 (609)
Q Consensus 302 gp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~~ 379 (609)
.|+ ++|++++++++ ++.+... ......+++..... ++.+++ .. ....+.
T Consensus 257 ~~G~r~G~~~~~~~~--~~~l~~~-------------------------~~~~~~~~~~~~~~-a~~~~l-~~~~~~~~~ 307 (404)
T 2o1b_A 257 MSGFRVGFAVGNKDM--IQALKKY-------------------------QTHTNAGMFGALQD-AAIYAL-NHYDDFLEE 307 (404)
T ss_dssp CGGGCCEEEEECHHH--HHHHHHH-------------------------HHHHCCCCCHHHHH-HHHHHH-HHCHHHHHH
T ss_pred CchhheEeEecCHHH--HHHHHHH-------------------------HhhccCCCCHHHHH-HHHHHH-hcCHHHHHH
Confidence 443 47999998887 2222111 00011222222221 122222 12 234567
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc
Q 038499 380 IKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG 459 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~ 459 (609)
++++.+++++++.+.|+++ ++++..+ ..+++.+...+ .. .+...+.+.|.++.||.+++
T Consensus 308 ~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~-~~---------------~~~~~l~~~l~~~~gi~v~~ 366 (404)
T 2o1b_A 308 QSNVFKTRRDRFEAMLAKA-DLPFVHA----KGGIYVWLETP-PG---------------YDSEQFEQFLVQEKSILVAP 366 (404)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCCEECC----CBSSEEEEECC-TT---------------CCHHHHHHHHHHHHCEECEE
T ss_pred HHHHHHHHHHHHHHHHHhc-CCeecCC----CcceEEEEeCC-CC---------------CCHHHHHHHHHHHCCEEEeC
Confidence 7778888899999999877 7777654 33554443333 11 35678888876667999999
Q ss_pred CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 460 GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 460 G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
|..|... .++++||+++. ++++++.++++|+++++.
T Consensus 367 g~~f~~~---------------------------~~~~iRis~~~--~~e~l~~~l~~l~~~l~~ 402 (404)
T 2o1b_A 367 GKPFGEN---------------------------GNRYVRISLAL--DDQKLDEAAIRLTELAYL 402 (404)
T ss_dssp SGGGCGG---------------------------GTTEEEEECCS--CTTHHHHHHHHHHGGGGG
T ss_pred chhhCcC---------------------------CCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 8776521 14899999985 788999999999877643
|
| >1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=238.51 Aligned_cols=299 Identities=12% Similarity=0.063 Sum_probs=197.2
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH----H
Q 038499 125 EASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----Q 200 (609)
Q Consensus 125 e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~ 200 (609)
++++.+++++|++ + .++++ +| ++++..++..+ +++|| .|+++.++|+++...+. .
T Consensus 2 ~l~~~la~~~g~~-~-~i~~~-sG-~~a~~~~~~~~---------------~~~g~--~v~~~~~~~~~~~~~~~~~~~~ 60 (331)
T 1pff_A 2 ALEGKIAKLEHAE-A-CAATA-SG-MGAIAASVWTF---------------LKAGD--HLISDDCLYGCTHALFEHQLRK 60 (331)
T ss_dssp HHHHHHHHHHTCS-E-EEEES-SH-HHHHHHHHHHH---------------CCTTC--EEEEESCCCHHHHHHHHTHHHH
T ss_pred hHHHHHHHHhCCC-e-EEEeC-Ch-HHHHHHHHHHh---------------cCCCC--EEEEcCCCcchHHHHHHHHHHh
Confidence 5789999999986 3 56665 88 57888887765 36888 69999999999887764 4
Q ss_pred cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHH-hCCeEEEeccccCCcccc
Q 038499 201 SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFDFAASGPYVEI 279 (609)
Q Consensus 201 ~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~-~g~~vivD~A~~~~~~~i 279 (609)
.|++++.++. .|+++|+++++ ++++++++++++||||.+.|+++|.++|++ ||+++|+|++++.+....
T Consensus 61 ~g~~~~~~~~-----~d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~ 130 (331)
T 1pff_A 61 FGVEVDFIDM-----AVPGNIEKHLK-----PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTN 130 (331)
T ss_dssp TTCEEEEECT-----TSTTHHHHTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCC
T ss_pred cCCEEEEeCC-----CCHHHHHHhhc-----CCCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCC
Confidence 7999999986 47889999887 579999999999999999999999999999 999999999998765433
Q ss_pred cCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEec-hhhccCCCCCCccC-CCceEeecccccccccccccccccccCC
Q 038499 280 DVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTK-ALYQLGSFPPSTCG-GGTVNYVNGFNEKDTLYLEDIEERESGG 355 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~-~~~~l~~~~p~~~g-gg~v~~~~~~~~~~~~~~~~~~~r~~~g 355 (609)
++. .+.|++++|+||++|+|++ .|++++++ ++ ++.+.+...+ + .+
T Consensus 131 ~~~----~~~d~~~~s~~K~~~~~~~r~~G~~~~~~~~~--~~~l~~~~~~~~-------------------------~~ 179 (331)
T 1pff_A 131 PLD----LGVDIVVHSATKYINGHTDVVAGLVCSRADII--AKVKSQGIKDIT-------------------------GA 179 (331)
T ss_dssp GGG----GTCSEEEEETTTTTSSSSSCCCEEEEECHHHH--HHHHHTCCCCCC-------------------------CC
T ss_pred hhh----cCCcEEEEECccccCCCCCceEEEEEeCcHHH--HHHHHHHHHhhc-------------------------CC
Confidence 332 2689999999999999887 79999998 76 2333222221 1 11
Q ss_pred ChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH----------hCCCCceEEeCCCCCCCcceEEEEeccCC
Q 038499 356 TPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALER----------LLPNQNIKILGNTSTKRQAILSFNIHSST 423 (609)
Q Consensus 356 tp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~----------L~~~p~i~v~~~~~~~r~~~~~f~~~~~~ 423 (609)
+.+..... ..++... ....+...+....+.+++.+. |.++|+++++.+....+.++++|.+..
T Consensus 180 ~~~~~~~~~~~~~l~~~---~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-- 254 (331)
T 1pff_A 180 IISPHDAWLITRGTLTL---DMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG-- 254 (331)
T ss_dssp CCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS--
T ss_pred CCCHHHHHHHHcCcchH---HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC--
Confidence 22222211 1222211 001122223333333333322 233344444432111245667666542
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccC---------cccCChhhhhhcCCChhHHHHHHHHHhhCCCCCC
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGG---------CACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVK 494 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G---------~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~ 494 (609)
...+.+.|.+ .||.++.. ++|+.+. +.. +....-. ..|+.
T Consensus 255 ------------------~~~~~~~l~~-~gI~~~~~s~g~~~sl~~~~~~~~-~~~--~~~~~~~---------~~g~~ 303 (331)
T 1pff_A 255 ------------------LEKAKKVLDN-CHVVSLAVSLGGPESLIQHPASMT-HAG--VPKEERE---------AAGLT 303 (331)
T ss_dssp ------------------HHHHHHHHHT-CSSSEECSSCCSSSCEEECHHHHT-STT--SCHHHHH---------HTTCC
T ss_pred ------------------HHHHHHHHHh-CCCceeccCCCCcceeeecchhhc-ccc--cCHHHHH---------hcCCC
Confidence 4577777754 69977654 4555321 110 1100000 12334
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 495 PGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 495 ~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
++++|||++.+++++++++++++|+.+
T Consensus 304 ~~~iRis~~~~~t~~~i~~l~~~l~~~ 330 (331)
T 1pff_A 304 DNLIRLSVGCENVQDIIDDLKQALDLV 330 (331)
T ss_dssp TTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred CCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence 689999999999999999999999753
|
| >3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.6e-25 Score=238.62 Aligned_cols=341 Identities=12% Similarity=0.072 Sum_probs=226.1
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCC-CCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTH-TCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~-~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaa 152 (609)
.++.|..+... +.++.+.+++.+.+... ++. ...|....+..++++.+.+++.+.+| .+++ +|++| +|++++
T Consensus 36 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~-~i~~~-~g~~~a 111 (398)
T 3ele_A 36 NVYDFSIGNPSIPAPQIVNDTIKELVTDY--DSVALHGYTSAQGDVETRAAIAEFLNNTHGTHFNAD-NLYMT-MGAAAS 111 (398)
T ss_dssp GCEECCSCCCCSCCCHHHHHHHHHHHHHS--CHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SSHHHH
T ss_pred CeEEeecCCCCCCCCHHHHHHHHHHHhcC--CccccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChH-HEEEc-cCHHHH
Confidence 45555544332 45678888888877541 100 00011111224556666666666666 4554 89998 788888
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhcc
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKD 230 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~ 230 (609)
+..++..+ +++| | .|++..+.|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 112 l~~~~~~l---------------~~~g~d--~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~---- 170 (398)
T 3ele_A 112 LSICFRAL---------------TSDAYD--EFITIAPYFPEYKVFVNAAGARLVEVPADTEHFQIDFDALEERIN---- 170 (398)
T ss_dssp HHHHHHHH---------------CCSTTC--EEEEESSCCTHHHHHHHHTTCEEEEECCCTTTSSCCHHHHHHTCC----
T ss_pred HHHHHHHH---------------cCCCCC--EEEEeCCCchhhHHHHHHcCCEEEEEecCCcCCcCCHHHHHHHhC----
Confidence 99888876 3788 8 689999999999989999999999999986 45899999999997
Q ss_pred CCCceEEEEecccCccccccC---HHHHHHHHHH------hCCeEEEeccccCCccc---ccCCCCCCCCccEEEEcCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSD---TRSIARLLHQ------YGGFACFDFAASGPYVE---IDVRSGQTDGYDAIFLSTHK 298 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~------~g~~vivD~A~~~~~~~---id~~~~~~~~~D~v~~S~hK 298 (609)
++++++++++++||||.+.| +++|+++|++ ||+++|+|++++..... +... ....+.++++.|+||
T Consensus 171 -~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~i~~~s~sK 248 (398)
T 3ele_A 171 -AHTRGVIINSPNNPSGTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFV-TKYYDNTLVCYSYSK 248 (398)
T ss_dssp -TTEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCG-GGTCSSEEEEEESTT
T ss_pred -cCCCEEEEcCCCCCCCCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCCh-HhhcCCeEEEEehhh
Confidence 57999999999999999998 5667789999 99999999998753211 1110 011245788999999
Q ss_pred CCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh-HHHHHHHHHHHHHHHhcC
Q 038499 299 FLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ-VIQMIRAALAFWVKEYIG 376 (609)
Q Consensus 299 ~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~-i~~~~~aal~~~~~~~~g 376 (609)
++|.| .++|++++++++ +... ... ..+..........+++ +.+.+ +.. .+.+ ..
T Consensus 249 ~~~~~G~r~G~~~~~~~~--~~~~-~~~-----------------~~~~~~~~~~~~~~~~~~~~~a--~~~-~l~~-~~ 304 (398)
T 3ele_A 249 SLSLPGERIGYVLVPDEV--YDKA-ELY-----------------AAVCGAGRALGYVCAPSLFQKM--IVK-CQGA-TG 304 (398)
T ss_dssp TSSCTTTCCEEEECCTTS--TTHH-HHH-----------------HHHHHHHHHTTCCCSCHHHHHH--HTT-CTTC-CC
T ss_pred cCCCccceeEEEEEcchh--hhHH-HHH-----------------HHHHHHhhhccccCCCHHHHHH--HHH-HhcC-HH
Confidence 99833 458999998876 2110 000 0000000111111222 22221 111 1111 11
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcE
Q 038499 377 HEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQ 456 (609)
Q Consensus 377 ~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~ 456 (609)
..++.++.++++.+.|+++ ++++..+ ..+++.+...+ . .+...+.+.|.+ .||.
T Consensus 305 ---~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-~----------------~~~~~~~~~l~~-~gi~ 358 (398)
T 3ele_A 305 ---DINAYKENRDLLYEGLTRI-GYHCFKP----DGAFYMFVKAL-E----------------DDSNAFCEKAKE-EDVL 358 (398)
T ss_dssp ---CHHHHHHHHHHHHHHHHHH-TCCEECC----SBSSEEEEECS-S----------------SCHHHHHHHHHT-TTEE
T ss_pred ---HHHHHHHHHHHHHHHHHHc-CCeecCC----CeeEEEEEEcC-C----------------CCHHHHHHHHHH-CCEE
Confidence 3456666777777777765 6777655 33554444333 1 256788888855 6999
Q ss_pred eccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 457 ARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 457 v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+++|..|.. ++++||+++ +++++++.++++|+++++..
T Consensus 359 v~~g~~~~~-----------------------------~~~iRis~~--~~~e~i~~~l~~l~~~l~~~ 396 (398)
T 3ele_A 359 IVAADGFGC-----------------------------PGWVRISYC--VDREMIKHSMPAFEKIYKKY 396 (398)
T ss_dssp CEESGGGTC-----------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred EeCccccCC-----------------------------CCeEEEEec--CCHHHHHHHHHHHHHHHHHh
Confidence 998877651 489999997 69999999999999988764
|
| >2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-26 Score=243.58 Aligned_cols=339 Identities=16% Similarity=0.112 Sum_probs=228.4
Q ss_pred CCChHHHHHHHHHhhcCC--ccCCCCCCchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 87 GRSLRYIENYIINNVLPF--YGNTHTCDSYVGQHTT-NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~--~~n~~~~~~~~~~~~~-~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
++.++.|.+++.+.+... .++++.. +..|.... .....+++++++++|.+++ +|++ ++|+. ++..++.++
T Consensus 33 ~~~~~~v~~a~~~~~~~~~~~~y~~~~-~~~g~~~~~~~e~~ar~~la~~~g~~~~-~i~~-~sGt~-a~~~~~~~~--- 105 (407)
T 2dkj_A 33 NFVSKQVREAVGSVLTNKYAEGYPGAR-YYGGCEVIDRVESLAIERAKALFGAAWA-NVQP-HSGSQ-ANMAVYMAL--- 105 (407)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCC-SSHHH-HHHHHHHHH---
T ss_pred CCCCHHHHHHHHhhhhcCcccCCCccc-ccCCchHHHHHHHHHHHHHHHHhCCCcc-eEEe-cchHH-HHHHHHHHh---
Confidence 445888999998877531 2333221 11122222 3333477899999998753 4444 48887 788887776
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchH---HHHHHcCce--EEEEecCC-CCCCCHHHHHHHHhhhccCCCceEE
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNL---LSWRQSLAE--VVEIGLDD-DGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~---~~~~~~G~~--vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
+++|| .|+++.++|+++. ..++..|++ ++.+++++ ++.+|+++|++++++ .+++++
T Consensus 106 ------------~~~gd--~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~----~~~~~v 167 (407)
T 2dkj_A 106 ------------MEPGD--TLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALE----HRPKVI 167 (407)
T ss_dssp ------------CCTTC--EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCC--EEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhh----cCCeEE
Confidence 36888 6999999998884 344455664 44444343 678999999999984 378888
Q ss_pred EEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe-chhh
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT-KALY 316 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~-~~~~ 316 (609)
++++++|+ .+.|+++|.++|++||+++|+|++++.|....+.........|++++|+||+++|+.+ |+++++ +++.
T Consensus 168 ~~~~p~~~--~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~ 244 (407)
T 2dkj_A 168 VAGASAYP--RFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRG-GLILSNDPELG 244 (407)
T ss_dssp EECCSSCC--SCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSC-EEEEESCHHHH
T ss_pred EEeccccC--CCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCc-eEEEECCHHHH
Confidence 88888886 7789999999999999999999998875443332211112479999999999998886 999999 5762
Q ss_pred ccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
+.+.+.. .....++++..+. +.+++... ...+.+.+.++.+++++++.+.
T Consensus 245 --~~l~~~~------------------------~~~~~~~~~~~~~~a~~~al~~~--~~~~~~~~~~~~~~~~~~l~~~ 296 (407)
T 2dkj_A 245 --KRIDKLI------------------------FPGIQGGPLEHVIAGKAVAFFEA--LQPEFKEYSRLVVENAKRLAEE 296 (407)
T ss_dssp --HHHHHHH------------------------TTTTCSSCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHHhhh------------------------cccccCCCcHHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHHH
Confidence 2221110 0112344444333 23344332 2345688889999999999999
Q ss_pred hCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC
Q 038499 395 LLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL 474 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i 474 (609)
|+++ +++++.+. ...+++++.+.. .. .+...+.+.|.+ .||.+++|..+.. .. ..
T Consensus 297 L~~~-g~~~~~~~--~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~-~gi~v~~~~~~~~----~~-~~ 351 (407)
T 2dkj_A 297 LARR-GYRIVTGG--TDNHLFLVDLRP-KG---------------LTGKEAEERLDA-VGITVNKNAIPFD----PK-PP 351 (407)
T ss_dssp HHHT-TCEEGGGS--CSSSEEEEECGG-GT---------------CCHHHHHHHHHH-TTEECEECCCTTC----SS-CT
T ss_pred HHhC-CceeecCC--CCceEEEEECcc-cC---------------CCHHHHHHHHHH-cCceecCCcCccc----cc-cc
Confidence 9887 88887541 234555555442 11 356788888854 6999998764210 00 00
Q ss_pred ChhHHHHHHHHHhhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHh
Q 038499 475 DEAQSYQIRSAIQKGYVGVKPGWTRISFPYY----MSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~----~t~eeid~ll~al~~v~~~ 524 (609)
. .++++|++++.+ +|++|+++++++|+++++.
T Consensus 352 ~------------------~~~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~~ 387 (407)
T 2dkj_A 352 R------------------VTSGIRIGTPAITTRGFTPEEMPLVAELIDRALLE 387 (407)
T ss_dssp T------------------TCSEEEEECHHHHHTTCCGGGHHHHHHHHHHHHHH
T ss_pred c------------------CCCceeeecccccccCCCHHHHHHHHHHHHHHHhc
Confidence 0 257899999764 7999999999999999876
|
| >3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.8e-25 Score=240.06 Aligned_cols=361 Identities=10% Similarity=-0.035 Sum_probs=234.6
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaal 153 (609)
+++.|..+... +.++.|.+++.+.+.... ....|.......++++.+.+++.+.+|.+ ++++|++| +|+++++
T Consensus 29 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~---~~~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~i~~~-~g~~~a~ 104 (422)
T 3fvs_A 29 DVVNLGQGFPDFPPPDFAVEAFQHAVSGDF---MLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVT-VGGYGAL 104 (422)
T ss_dssp CCEECCCSSCSSCCCHHHHHHHHHHHHSCG---GGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEE-SHHHHHH
T ss_pred CceEeCCCCCCCCCCHHHHHHHHHHHhCCC---ccCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCcEEEE-CChHHHH
Confidence 34555544433 467788899888775421 00011111122445555556666666643 31379998 7888899
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC----C--------CCCCHHHH
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD----D--------GLLDIEAL 221 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~----~--------g~ld~e~L 221 (609)
..++..+ +++|| .|++..+.|+++...++..|++++.++.+. + +.+|+++|
T Consensus 105 ~~~~~~~---------------~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~~~~~~d~~~l 167 (422)
T 3fvs_A 105 FTAFQAL---------------VDEGD--EVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMEL 167 (422)
T ss_dssp HHHHHHH---------------CCTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECBCCCCCSSSCCBGGGSBCCHHHH
T ss_pred HHHHHHH---------------cCCCC--EEEEcCCCchhhHHHHHHcCCEEEEEecccccccccccccccCCCCCHHHH
Confidence 9888876 37888 689999999999888999999999999875 3 36899999
Q ss_pred HHHHhhhccCCCceEEEEecccCcccccc---CHHHHHHHHHHhCCeEEEeccccCC----cccccCCCCCC-CCccEEE
Q 038499 222 RSKLELYKDAKRPILGSFSACSNVTGIYS---DTRSIARLLHQYGGFACFDFAASGP----YVEIDVRSGQT-DGYDAIF 293 (609)
Q Consensus 222 ~~al~~~~~~~~~~lv~~s~~sn~TG~~~---dl~~I~~la~~~g~~vivD~A~~~~----~~~id~~~~~~-~~~D~v~ 293 (609)
+++++ ++++++++++++||||.+. ++++|+++|++||+++|+|++++.. ....++..+.. .+.++++
T Consensus 168 ~~~~~-----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 242 (422)
T 3fvs_A 168 AGKFT-----SRTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTI 242 (422)
T ss_dssp HTTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEE
T ss_pred HhhcC-----CCceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhcccccCcEEEE
Confidence 99997 5799999999999999998 4889999999999999999998752 22223332211 1456888
Q ss_pred EcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHH
Q 038499 294 LSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK 372 (609)
Q Consensus 294 ~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~ 372 (609)
.|+||++|.| .++|++++++++ ++.+... ......+.+......+...+...
T Consensus 243 ~S~sK~~g~~G~r~G~~~~~~~~--~~~~~~~-------------------------~~~~~~~~~~~~~~a~~~~l~~~ 295 (422)
T 3fvs_A 243 GSAGKTFSATGWKVGWVLGPDHI--MKHLRTV-------------------------HQNSVFHCPTQSQAAVAESFERE 295 (422)
T ss_dssp EEHHHHHTCGGGCCEEEECCHHH--HHHHHHH-------------------------HHTTTCCCCHHHHHHHHHHHHHH
T ss_pred ecchhccCCccceEEEEEeCHHH--HHHHHHH-------------------------HhhccCCCCcHHHHHHHHHHhhc
Confidence 8999999733 358999998887 2222110 00011122222221111111100
Q ss_pred ------HhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCC--CCCCCCChHH
Q 038499 373 ------EYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKT--ETDKPLHGPF 444 (609)
Q Consensus 373 ------~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~--~~~~~l~~~~ 444 (609)
.....+.+.++.+++++++.+.|+++ ++++..+. .+++.+.... ..... ... .........+
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~ 365 (422)
T 3fvs_A 296 QLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQ----GSYFLITDIS-DFKRK----MPDLPGAVDEPYDRR 365 (422)
T ss_dssp HHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCS----BSSEEEEECH-HHHHH----CCCCCCCTTCCHHHH
T ss_pred cccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCC----eeeEEEEech-hhccc----ccccccccccccHHH
Confidence 12345778888999999999999988 88877652 3444444332 10000 000 0000000446
Q ss_pred HHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 445 VATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 445 v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++.|.+++||.+.+|..|..+.... ..++++|||++. ++++++.++++|++++++
T Consensus 366 ~~~~ll~~~gv~v~~g~~f~~~~~~~----------------------~~~~~iRis~~~--~~e~i~~~l~~l~~~l~~ 421 (422)
T 3fvs_A 366 FVKWMIKNKGLVAIPVSIFYSVPHQK----------------------HFDHYIRFCFVK--DEATLQAMDEKLRKWKVE 421 (422)
T ss_dssp HHHHHHHHHCEECEEGGGGSCHHHHT----------------------TSCSEEEEECCC--CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCEEEeCcHHhcCCcCCC----------------------CCCCeEEEEecC--CHHHHHHHHHHHHHHHhh
Confidence 77776676799999998887431110 025899999985 999999999999988754
|
| >3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-25 Score=232.85 Aligned_cols=356 Identities=13% Similarity=0.046 Sum_probs=230.3
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
..++.+.+++.+.+...+ +.. .....++++.+++++|.+ +++++++|++ ++..++..+....
T Consensus 12 ~~~~~~~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~---~~i~~~sGt~-a~~~al~~~~~~~--- 73 (390)
T 3b8x_A 12 TWDDLEYKAIQSVLDSKM-------FTM----GEYVKQYETQFAKTFGSK---YAVMVSSGST-ANLLMIAALFFTK--- 73 (390)
T ss_dssp CCCHHHHHHHHHHHHHTC-------CSS----CHHHHHHHHHHHHHHTCS---EEEEESCHHH-HHHHHHHHTTSSS---
T ss_pred CCCHHHHHHHHHHHHcCC-------CCC----ChHHHHHHHHHHHHHCCC---cEEEECCHHH-HHHHHHHHHHhhh---
Confidence 456778888877765311 111 234778999999999986 4677768885 7777777651000
Q ss_pred HHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC-CCCCHHHHHHHHhhhccCCCceEEEEecccCcc
Q 038499 168 LREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD-GLLDIEALRSKLELYKDAKRPILGSFSACSNVT 246 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~T 246 (609)
...+++|| .|+++.++|+++..+++..|++++.++++++ +.+|+++|+++++ +++++++++ |++
T Consensus 74 -----~~~~~~g~--~Vi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~---~~~ 138 (390)
T 3b8x_A 74 -----KPRLKKGD--EIIVPAVSWSTTYYPLQQYGLRVKFVDIDINTLNIDIESLKEAVT-----DSTKAILTV---NLL 138 (390)
T ss_dssp -----SCSCCTTC--EEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHCC-----TTEEEEEEE---CGG
T ss_pred -----hcCCCCcC--EEEECCCCcHHHHHHHHHcCCEEEEEecCccccCcCHHHHHHHhC-----cCCeEEEEE---CCc
Confidence 00036787 7999999999999999999999999999875 8899999999998 578988887 468
Q ss_pred ccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcC--CCCCCCCCCcEEEEEec-hhhccCCCCC
Q 038499 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLST--HKFLGGPGSPGILLMTK-ALYQLGSFPP 323 (609)
Q Consensus 247 G~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~--hK~lggp~g~G~L~~~~-~~~~l~~~~p 323 (609)
|...|+++|.++|++||+++|+|++|+.+... +...... ..|+.++|. +|.++++.| |++++++ ++. +.+.+
T Consensus 139 g~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~g~-~~~~~~~s~~~~k~~~~g~g-G~~~~~~~~l~--~~~~~ 213 (390)
T 3b8x_A 139 GNPNNFDEINKIIGGRDIILLEDNCESMGATF-NNKCAGT-FGLMGTFSSFYSNHIATMEG-GCIVTDDEEIY--HILLC 213 (390)
T ss_dssp GCCCCHHHHHHHHTTSCCEEEEECTTCTTCEE-TTEETTS-SSSEEEEECCTTSSSCSSSC-EEEEESCHHHH--HHHHH
T ss_pred cChhhHHHHHHHHHHcCCEEEEECcCcccCEE-CCccccc-ccceEEEEccCCCCCccCCc-eEEEeCCHHHH--HHHHH
Confidence 88999999999999999999999999987655 4433311 236666542 344444555 9999887 441 12222
Q ss_pred CccCC--CceEeeccc--cccccccccc---ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 324 STCGG--GTVNYVNGF--NEKDTLYLED---IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 324 ~~~gg--g~v~~~~~~--~~~~~~~~~~---~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
...+| +........ ......+... .......+++++.+.+..+. + ...+.+.++.+++++++.+.|+
T Consensus 214 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~---l---~~l~~~~~~~~~~~~~l~~~L~ 287 (390)
T 3b8x_A 214 IRAHGWTRNLPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQ---L---KKLPRFISVRRKNAEYFLDKFK 287 (390)
T ss_dssp HTBTTBSTTSCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCCccccccccccccccccccccccceeccccccCcCHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHhc
Confidence 22222 110000000 0000000000 00112233666655443221 1 1246778888999999999999
Q ss_pred CCCceEEeCCCCCCCcceEEE--EeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc---CcccCC-hhhhh
Q 038499 397 PNQNIKILGNTSTKRQAILSF--NIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG---GCACAG-PYGHH 470 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f--~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~---G~~ca~-p~~~~ 470 (609)
++|++++..+. .+.+++.| .+.. . ...+...+.+.|.+ .||.++. |+.|.. |....
T Consensus 288 ~~~~~~~~~~~--~~~~~~~~~i~~~~-~--------------~~~~~~~l~~~L~~-~gI~v~~~~~~~~~~~~~~~~~ 349 (390)
T 3b8x_A 288 DHPYLDVQQET--GESSWFGFSFIIKK-D--------------SGVIRKQLVENLNS-AGIECRPIVTGNFLKNTDVLKY 349 (390)
T ss_dssp TCSSEEECCCC--SBCCCCEEEEEECT-T--------------SCCCHHHHHHHHHH-TTBCCBCSTTSSGGGCHHHHTT
T ss_pred CCCCcccCCCC--CCcccEEEEEEecC-c--------------CcccHHHHHHHHHH-CCCCeeeecCCchhhcchhhhc
Confidence 99999987642 23344333 3331 0 01467889999965 6999998 677877 64321
Q ss_pred -----hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 471 -----LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 471 -----ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
+..++ .+..+ ..+.+||+++.++|++|+++++++|
T Consensus 350 ~~~~~~~~~~--~~~~~-----------~~~~l~l~~~~~~t~~di~~i~~~l 389 (390)
T 3b8x_A 350 FDYTVHNNVD--NAEYL-----------DKNGLFVGNHQIELFDEIDYLREVL 389 (390)
T ss_dssp CEEEESSCCH--HHHHH-----------HHHEEEEECCSSCCHHHHHHHHHHT
T ss_pred CCCCCcCCCh--HHHHH-----------hcCEEEeeCCCCCCHHHHHHHHHhh
Confidence 11222 22221 1378999999999999999999987
|
| >1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-25 Score=233.66 Aligned_cols=349 Identities=14% Similarity=0.068 Sum_probs=229.0
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
.|+.+.+++.+.+...+ +.. .....++++.+++++|.+ +++++ +|+++++..++.+++
T Consensus 18 ~~~~~~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~---~~~~~-~~gt~al~~~~~~~~------- 75 (393)
T 1mdo_A 18 MGAEELAAVKTVLDSGW-------ITT----GPKNQELEAAFCRLTGNQ---YAVAV-SSATAGMHIALMALG------- 75 (393)
T ss_dssp CCHHHHHHHHHHHHHTC-------CSS----SHHHHHHHHHHHHHHCCS---EEEEE-SCHHHHHHHHHHHTT-------
T ss_pred CCHHHHHHHHHHHhcCC-------cCC----ChHHHHHHHHHHHHhCCC---cEEEe-cChHHHHHHHHHHcC-------
Confidence 44667788877664321 001 134678999999999984 68888 455678888888763
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC-CCCCHHHHHHHHhhhccCCCceEEEEecccCccc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD-GLLDIEALRSKLELYKDAKRPILGSFSACSNVTG 247 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG 247 (609)
+++|| .|+++.++|+++...++..|++++.++++++ +.+|+++|+++++ +++++++++ |+||
T Consensus 76 -------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~-----~~~~~v~~~---~~~G 138 (393)
T 1mdo_A 76 -------IGEGD--EVITPSMTWVSTLNMIVLLGANPVMVDVDRDTLMVTPEHIEAAIT-----PQTKAIIPV---HYAG 138 (393)
T ss_dssp -------CCTTC--EEEEESSSCHHHHHHHHHTTCEEEEECBCTTTCCBCHHHHHHHCC-----TTEEEECCB---CGGG
T ss_pred -------CCCCC--EEEeCCCccHhHHHHHHHCCCEEEEEeccCCcCCCCHHHHHHhcC-----CCceEEEEe---CCCC
Confidence 36888 6999999999999999999999999999874 6899999999998 578888765 4899
Q ss_pred cccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCC-ccEEEEcCC--CCCCCCCCcEEEEEe-chhhccCCCCC
Q 038499 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDG-YDAIFLSTH--KFLGGPGSPGILLMT-KALYQLGSFPP 323 (609)
Q Consensus 248 ~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~-~D~v~~S~h--K~lggp~g~G~L~~~-~~~~~l~~~~p 323 (609)
.+.|+++|.++|++||+++|+|++++.+... +..++ + .|++++|+| |+++|+ ..|+++.+ +++ ++.+.+
T Consensus 139 ~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~-~~~~~---~~~d~~~~S~~k~K~l~~~-~~g~~~~~~~~~--~~~l~~ 211 (393)
T 1mdo_A 139 APADLDAIYALGERYGIPVIEDAAHATGTSY-KGRHI---GARGTAIFSFHAIKNITCA-EGGIVVTDNPQF--ADKLRS 211 (393)
T ss_dssp CCCCHHHHHHHHHHHTCCBCEECTTCTTCEE-TTEET---TSSSEEEEECCTTSSSCSS-SCEEEEESCHHH--HHHHHH
T ss_pred CcCCHHHHHHHHHHcCCeEEEECccccCCeE-CCeec---CCCCeEEEeCCCCCccccc-cceEEEeCCHHH--HHHHHH
Confidence 9999999999999999999999999876443 22223 3 799999999 999865 46899986 555 222222
Q ss_pred CccCCCceEeecccccccccccccccccc---cCCC----hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 324 STCGGGTVNYVNGFNEKDTLYLEDIEERE---SGGT----PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~r~---~~gt----p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
...++... +.+. .+.......+ +.|+ +++.+ ++.+. ...+.+.+.++.+++++++.+.|.
T Consensus 212 ~~~~~~~~---~~~~----~~~~~~~~~~~~~~~g~~~~~~~~~~----a~~~~--~l~~~~~~~~~~~~~~~~l~~~L~ 278 (393)
T 1mdo_A 212 LKFHGLGV---DAWD----RQSGGRAPQAEVLAPGYKYNLPDLNA----AIALA--QLQKLDALNARRAAIAAQYHQAMA 278 (393)
T ss_dssp HTBTTEEC---C---------------CCEESSCCCBCCCCHHHH----HHHHH--HHHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCcc---cchh----hhcccccccccccccCccCCCCHHHH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 22222110 0000 0100001111 2233 22222 11111 112466777888889999999999
Q ss_pred CCCceEEeCCCC--C-CCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC--Chhhhhh
Q 038499 397 PNQNIKILGNTS--T-KRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA--GPYGHHL 471 (609)
Q Consensus 397 ~~p~i~v~~~~~--~-~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca--~p~~~~l 471 (609)
+++ +++..... . ....++++.+.. .. ...+...+.+.|.+ .||.+++|..|. .|+...
T Consensus 279 ~~~-~~~~~~~~~~~~~~~~~~~v~~~~-~~-------------~~~~~~~l~~~l~~-~gi~v~~~~~~~~~~~~~~~- 341 (393)
T 1mdo_A 279 DLP-FQPLSLPSWEHIHAWHLFIIRVDE-AR-------------CGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRE- 341 (393)
T ss_dssp TSS-CEECCCCSSCEECCCSCEEEECCH-HH-------------HSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHH-
T ss_pred cCC-cccccCCCCCCCceeEEEEEEecc-cc-------------cccCHHHHHHHHHh-CCCCcccccCccccChhhhc-
Confidence 886 88764321 1 122245555431 00 00357789999976 699999987763 121110
Q ss_pred cCC---ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 472 LDL---DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 472 l~i---~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+. ..+.+..+ ..+++|++++.++|++|+++++++|++++++.
T Consensus 342 -~~~~~~~~~~~~~-----------~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~~~ 386 (393)
T 1mdo_A 342 -RFPTLTLPDTEWN-----------SERICSLPLFPDMTESDFDRVITALHQIAGQG 386 (393)
T ss_dssp -HSTTCCCHHHHHH-----------HTTEEEECCCTTCCHHHHHHHHHHHHHHHC--
T ss_pred -cCCccCChhHHHH-----------HhCEEEecCCCCCCHHHHHHHHHHHHHHHhcC
Confidence 00 00111100 14689999999999999999999999987653
|
| >2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=236.57 Aligned_cols=333 Identities=13% Similarity=0.028 Sum_probs=224.3
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----CCC--CCCcEEEeCChHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----GGG--QEDAMIFCGSGTT 150 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g~~--~~~~vift~sGtt 150 (609)
++.++.+... +.++.+.+++.+.+... ..+ .|.. .....++++.+++++ |.+ ++++|++| +|++
T Consensus 27 ~idl~~~~~~~~~~~~v~~a~~~~~~~~--~~~--~y~~----~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~-~g~~ 97 (376)
T 2dou_A 27 LIDLSIGSTDLPPPEAPLKALAEALNDP--TTY--GYCL----KSCTLPFLEEAARWYEGRYGVGLDPRREALAL-IGSQ 97 (376)
T ss_dssp CEECSSCCCCCCCCHHHHHHHHHHTTCG--GGS--SCCC----HHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEE-SSHH
T ss_pred EEeccCCCCCCCCCHHHHHHHHHHHhCC--CcC--CCCC----CCCCHHHHHHHHHHHHHHhCCCCCCCccEEEc-CCcH
Confidence 4555444332 24678888888776431 111 1111 123455666666665 875 22379998 7888
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc
Q 038499 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~ 230 (609)
+++..++.++ +++|| .|++..+.|+++...++..|++++.++.+.+..+|+++|+++++
T Consensus 98 ~a~~~~~~~l---------------~~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~d~~~l~~~l~---- 156 (376)
T 2dou_A 98 EGLAHLLLAL---------------TEPED--LLLLPEVAYPSYFGAARVASLRTFLIPLREDGLADLKAVPEGVW---- 156 (376)
T ss_dssp HHHHHHHHHH---------------CCTTC--EEEEESSCCHHHHHHHHHTTCEEEEECBCTTSSBCGGGSCHHHH----
T ss_pred HHHHHHHHHh---------------cCCCC--EEEECCCCcHhHHHHHHHcCCEEEEeeCCCCCCCCHHHHHHhhc----
Confidence 8898888876 36788 69999999999998899999999999984444689999999997
Q ss_pred CCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc---cccCCCC-CCCCccEEEEcCCCCCCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---EIDVRSG-QTDGYDAIFLSTHKFLGGP 303 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~id~~~~-~~~~~D~v~~S~hK~lggp 303 (609)
++++++++++++||||.+.| +++|+++|++||+++|+|++++.... +.++... ...+.++++.|+||++|.|
T Consensus 157 -~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 235 (376)
T 2dou_A 157 -REAKVLLLNYPNNPTGAVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEGEAPSPLALPGAKERVVELFSLSKSYNLA 235 (376)
T ss_dssp -HHEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCG
T ss_pred -cCceEEEECCCCCCcCccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCChhhcCCCCCcEEEEecchhhcCCh
Confidence 46899999999999999987 56789999999999999999875321 1121111 1124578889999999744
Q ss_pred C-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-hcCHHHHH
Q 038499 304 G-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-YIGHEVIK 381 (609)
Q Consensus 304 ~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~~g~~~i~ 381 (609)
+ .+|++++++++ ++.+... ......+++.+.+. ++.+.+ .. ....+.+.
T Consensus 236 G~r~G~~~~~~~~--~~~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l-~~~~~~~~~~~ 286 (376)
T 2dou_A 236 GFRLGFALGSEEA--LARLERV------------------------KGVIDFNQYAGVLR--MGVEAL-KTPKEVVRGYA 286 (376)
T ss_dssp GGCCEEEEECHHH--HHHHHHH------------------------HHHHCCCSCHHHHH--HHHHHH-TSCHHHHHHHH
T ss_pred hheeEEEecCHHH--HHHHHHH------------------------HHhcccCCCHHHHH--HHHHHH-hCcHHHHHHHH
Confidence 3 47999999887 2222111 00111122222221 222222 11 22356677
Q ss_pred HHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCc
Q 038499 382 KQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGC 461 (609)
Q Consensus 382 ~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~ 461 (609)
++.+++++++.+.|+++ +++..+ ..+++.+...+ .. .+...+.+.|.++ ||.+++|.
T Consensus 287 ~~~~~~~~~l~~~L~~~--~~~~~~----~~~~~~~~~~~-~~---------------~~~~~~~~~l~~~-gi~v~~g~ 343 (376)
T 2dou_A 287 RVYRERALGMAEALKGV--LSLLPP----RATMYLWGRLP-EG---------------VDDLEFGLRLVER-GVALAPGR 343 (376)
T ss_dssp HHHHHHHHHHHHHHTTT--SEECCC----CBSSEEEEECC-TT---------------CCHHHHHHHHHHT-TEECEEGG
T ss_pred HHHHHHHHHHHHHHHHh--cCccCC----CeeEEEEEECC-CC---------------CCHHHHHHHHHHC-CEEEcCch
Confidence 78888899999999887 666544 23554443333 11 3567888888776 99999887
Q ss_pred ccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 462 ACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 462 ~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.|... .++++||+++. ++++++.++++|++++
T Consensus 344 ~f~~~---------------------------~~~~~Ris~~~--~~~~i~~~l~~l~~~l 375 (376)
T 2dou_A 344 GFGPG---------------------------GKGFVRIALVR--PLEELLEAAKRIREAL 375 (376)
T ss_dssp GGCGG---------------------------GTTEEEEECCS--CHHHHHHHHHHHHHTC
T ss_pred hhCCC---------------------------CCCeEEEEecC--CHHHHHHHHHHHHHHh
Confidence 76411 14899999984 8999999999998753
|
| >3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=240.90 Aligned_cols=334 Identities=15% Similarity=0.158 Sum_probs=225.4
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----CC-CCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----GG-GQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g~-~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
+++.+.+++.+.+........ .|... ....++++.+++++ |. +++ +|++| +|+++++..++.++
T Consensus 92 p~~~v~~a~~~~l~~~~~~~~--~Y~~~----~g~~~lr~~ia~~~~~~~g~~~~~-~v~~t-~G~~~al~~~~~~l--- 160 (448)
T 3aow_A 92 PKEIIRDILVEIMEKYADKAL--QYGTT----KGFTPLRETLMKWLGKRYGISQDN-DIMIT-SGSQQALDLIGRVF--- 160 (448)
T ss_dssp CHHHHHHHHHHHHHHSHHHHH--SCCCT----TCCHHHHHHHHHHHHHHHCCCTTS-EEEEE-SSHHHHHHHHHHHH---
T ss_pred CHHHHHHHHHHHHHhhhHHHh--CCCCC----CCcHHHHHHHHHHHHHhcCcCChh-hEEEe-CcHHHHHHHHHHHH---
Confidence 456788887776643100000 01111 11344555666665 88 454 89998 78888999988877
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhc-cCCCceEE-EEec
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYK-DAKRPILG-SFSA 241 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~-~~~~~~lv-~~s~ 241 (609)
+++|| .|++..+.|+++...++..|++++.++.+++| +|+++|+++++... ...+++++ ++++
T Consensus 161 ------------~~~Gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~ 225 (448)
T 3aow_A 161 ------------LNPGD--IVVVEAPTYLAALQAFNFYEPQYIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPT 225 (448)
T ss_dssp ------------CCTTC--EEEEEESCCHHHHHHHHTTCCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred ------------cCCCC--EEEEeCCChHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCC
Confidence 37888 69999999999999999999999999988765 89999999997210 00368886 5789
Q ss_pred ccCccccccCH---HHHHHHHHHhCCeEEEeccccCCcc----cccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEec
Q 038499 242 CSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTK 313 (609)
Q Consensus 242 ~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~ 313 (609)
++||||.+.+. ++|.++|++||+++|+|++++.... ..++..+...+.++++.|++|+++ |+ .+|++++++
T Consensus 226 ~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~-~GlriG~v~~~~ 304 (448)
T 3aow_A 226 FQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILA-PGFRIGWMVGDP 304 (448)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTC-GGGCCEEEEECH
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhcc-ccccEEEEEeCH
Confidence 99999999874 5899999999999999999876432 122332222356788999999998 53 489999998
Q ss_pred hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHH
Q 038499 314 ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE---YIGHEVIKKQEETYIER 390 (609)
Q Consensus 314 ~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~---~~g~~~i~~~~~~l~~~ 390 (609)
++ ++.+... ......+++.+.+.+ +.+++ .+ ....+.++++.++.+++
T Consensus 305 ~l--~~~l~~~------------------------~~~~~~~~~~~~q~a--~~~~L-~~~~~~~~~~~~~~~~~~~~~~ 355 (448)
T 3aow_A 305 GI--IRKMEIA------------------------KQSTDLCTNVFGQVV--AWRYV-DGGYLEKHIPEIRKFYKPRRDA 355 (448)
T ss_dssp HH--HHHHHHH------------------------HHHHHSSCCHHHHHH--HHHHH-HTTHHHHHHHHHHHHHHHHHHH
T ss_pred HH--HHHHHHH------------------------HHHhcCCCCHHHHHH--HHHHH-HhCCHHHHHHHHHHHHHHHHHH
Confidence 87 3222111 011112333333322 22222 11 12245666777788888
Q ss_pred HHHHhCC-CC-ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh
Q 038499 391 ALERLLP-NQ-NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG 468 (609)
Q Consensus 391 ~~~~L~~-~p-~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~ 468 (609)
+.+.|++ +| ++++..+ ..+++.+...+ .. .+...+.+.|.++ ||.+++|..|... +
T Consensus 356 l~~~L~~~~~~g~~~~~p----~~g~~~~v~~~-~~---------------~~~~~l~~~l~~~-gV~v~pg~~f~~~-~ 413 (448)
T 3aow_A 356 MLEALEEFMPEGVKWTKP----EGGMFIWVTLP-DG---------------IDSKKMLERAIKK-GVAYVPGEAFYAH-R 413 (448)
T ss_dssp HHHHHHHHCCTTCEECCC----SBSSEEEEECS-TT---------------CCHHHHHHHHHHT-TEECEEGGGGSTT-C
T ss_pred HHHHHHHhCCCCeEEeCC----CccEEEEEEcC-CC---------------CCHHHHHHHHHHC-CcEEEcchhhcCC-C
Confidence 8888876 57 6887654 23444444443 11 3577888888776 9999998776521 0
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
..++++||+++. .++++++.++++|+++++..
T Consensus 414 ------------------------~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~~~ 445 (448)
T 3aow_A 414 ------------------------DVKNTMRLNFTY-VDEDKIMEGIKRLAETIKEE 445 (448)
T ss_dssp ------------------------CCCSEEEEECSS-SCTHHHHHHHHHHHHHHHHH
T ss_pred ------------------------CCCCEEEEEeCC-CCHHHHHHHHHHHHHHHHHH
Confidence 025899999986 48999999999999987653
|
| >3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=241.74 Aligned_cols=357 Identities=11% Similarity=-0.008 Sum_probs=229.6
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAI 153 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal 153 (609)
++++|+.+... +.++.|.+++.+.+.... .+. |....+..++++.+.+++.+.+| .+++++|++| +|+++++
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~--~~~--y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~-~g~~~a~ 98 (410)
T 3e2y_A 24 SVVNLGQGFPDISPPSYVKEELSKAAFIDN--MNQ--YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVA-VGAYGSL 98 (410)
T ss_dssp TSEECSSCCCCSCCCHHHHHHHHHHHTCGG--GGS--CCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHHH
T ss_pred CeEEecCCCCCCCCCHHHHHHHHHHHhCcc--ccC--CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEe-CCcHHHH
Confidence 67888887655 467889999988775320 000 11111123334444444444444 4452489998 7888899
Q ss_pred HHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC-----------CCCCCCHHHHH
Q 038499 154 KRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD-----------DDGLLDIEALR 222 (609)
Q Consensus 154 ~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-----------~~g~ld~e~L~ 222 (609)
..++..+ +++|| .|++..+.|+++...++..|++++.++++ .++.+|+++|+
T Consensus 99 ~~~~~~~---------------~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~ 161 (410)
T 3e2y_A 99 FNSIQGL---------------VDPGD--EVIIMVPFYDCYEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELE 161 (410)
T ss_dssp HHHHHHH---------------CCTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHH
T ss_pred HHHHHHh---------------cCCCC--EEEEeCCCchhhHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHH
Confidence 9888876 37888 68899999999988899999999999876 24568999999
Q ss_pred HHHhhhccCCCceEEEEecccCcccccc---CHHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCC-CCCccEEEE
Q 038499 223 SKLELYKDAKRPILGSFSACSNVTGIYS---DTRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQ-TDGYDAIFL 294 (609)
Q Consensus 223 ~al~~~~~~~~~~lv~~s~~sn~TG~~~---dl~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~-~~~~D~v~~ 294 (609)
++++ ++++++++++++||||.+. ++++|+++|++||+++|+|++++... ...++.... ..+.++++.
T Consensus 162 ~~~~-----~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 236 (410)
T 3e2y_A 162 SKFS-----SKTKAIILNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIG 236 (410)
T ss_dssp TTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEE
T ss_pred hhcC-----CCceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEe
Confidence 9987 5799999999999999995 68889999999999999999987422 222232221 113458888
Q ss_pred cCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHH--
Q 038499 295 STHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFW-- 370 (609)
Q Consensus 295 S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~-- 370 (609)
|++|++|.| .++|++++++++ ++.+... ......+.+.+.+.+ .+++.-.
T Consensus 237 S~sK~~g~~G~r~G~~~~~~~~--~~~~~~~------------------------~~~~~~~~~~~~~~a~~~~l~~~~~ 290 (410)
T 3e2y_A 237 SAGKTFSVTGWKLGWSIGPAHL--IKHLQTV------------------------QQNSFYTCATPLQAALAEAFWIDIK 290 (410)
T ss_dssp EHHHHSSCGGGCCEEEECCHHH--HHHHHHH------------------------HHTTTCCCCHHHHHHHHHHHHHHHT
T ss_pred cchhhcCCCCceEEEEEECHHH--HHHHHHH------------------------HHhhccCCChHHHHHHHHHHHhhhc
Confidence 999999733 358999999887 2222110 000011122222211 1221100
Q ss_pred --HHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHH
Q 038499 371 --VKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATL 448 (609)
Q Consensus 371 --~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 448 (609)
.......+.+.++.+++++++.+.|+++ ++.+..+ ..+++.+.... ..... .........+..++++.
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~ 360 (410)
T 3e2y_A 291 RMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVP----DGGYFIIADVS-SLGAD----LSDMNSDEPYDYKFVKW 360 (410)
T ss_dssp TTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBC----SBSSEEEEECG-GGCCC----CTTCCSSCCHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCC----CccEEEEEEch-hhhcc----cccccccccCHHHHHHH
Confidence 0012345778888889999999999888 8887765 23444444332 11000 00000000112366666
Q ss_pred HhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 449 LNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 449 L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
|.+++||.+.+|..|..+..... .++++|||++. ++++++.++++|++
T Consensus 361 ll~~~gv~v~~g~~f~~~~~~~~----------------------~~~~iRis~~~--~~e~l~~~l~~l~~ 408 (410)
T 3e2y_A 361 MTKHKKLTAIPVSAFCDSKSKPH----------------------FEKLVRFCFIK--KDSTLDAAEEIFRA 408 (410)
T ss_dssp HHHHHSEECEEGGGGSCTTTHHH----------------------HTTEEEEECCC--CHHHHHHHHHHHHT
T ss_pred HHHHcCEEEeCchhhCCCCCCCC----------------------CCCEEEEEEcC--CHHHHHHHHHHHHh
Confidence 65667999999988864211000 15899999875 99999999999875
|
| >3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.5e-25 Score=233.02 Aligned_cols=344 Identities=13% Similarity=0.017 Sum_probs=231.7
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC---CCCcEEEeCChHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG---QEDAMIFCGSGTTAA 152 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~---~~~~vift~sGttaa 152 (609)
+++.|+.+... +.++.|.+++.+.+......+.. .+..++++++.+++++.+|.+ ++++|++| +|++++
T Consensus 31 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t-~g~~~a 103 (396)
T 3jtx_A 31 EAVPLHIGEPKHPTPKVITDALTASLHELEKYPLT------AGLPELRQACANWLKRRYDGLTVDADNEILPV-LGSREA 103 (396)
T ss_dssp CCEECSCCSCCSCCCHHHHHHHHHTGGGGGSCCCT------TCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEE-SSHHHH
T ss_pred CeEEeCCcCCCCCCCHHHHHHHHHHhhhccCCCCC------CCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEc-CCcHHH
Confidence 56677655433 35678899998877543332221 113456666677777777853 43379998 788889
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCC---ceEEEECCCCccchHHHHHHcCceEEEEecCCCC-CCCHHHHHHHHhhh
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEE---RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDG-LLDIEALRSKLELY 228 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g-~ld~e~L~~al~~~ 228 (609)
+..++..+. ++|+ +..|++..+.|+++...++..|++++.++.+.++ .+|+++|+++++
T Consensus 104 l~~~~~~~~---------------~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~g~~~d~~~l~~~~~-- 166 (396)
T 3jtx_A 104 LFSFVQTVL---------------NPVSDGIKPAIVSPNPFYQIYEGATLLGGGEIHFANCPAPSFNPDWRSISEEVW-- 166 (396)
T ss_dssp HHHHHHHHC---------------CC---CCCCEEEEEESCCHHHHHHHHHTTCEEEEEECCTTTCCCCGGGSCHHHH--
T ss_pred HHHHHHHHh---------------CCCCccCCCEEEEcCCCcHhHHHHHHHcCCEEEEeecCCCCCccCHHHHHHhhc--
Confidence 999888763 6752 1279999999999988899999999999996544 689999999998
Q ss_pred ccCCCceEEEEecccCccccccCHHH---HHHHHHHhCCeEEEeccccCCcc----cccCCC----CC-CCCccEEEEcC
Q 038499 229 KDAKRPILGSFSACSNVTGIYSDTRS---IARLLHQYGGFACFDFAASGPYV----EIDVRS----GQ-TDGYDAIFLST 296 (609)
Q Consensus 229 ~~~~~~~lv~~s~~sn~TG~~~dl~~---I~~la~~~g~~vivD~A~~~~~~----~id~~~----~~-~~~~D~v~~S~ 296 (609)
++++++++++++||||.+.|.++ |+++|++||+++|+|++++.... +..... +. ..+.++++.|+
T Consensus 167 ---~~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~ 243 (396)
T 3jtx_A 167 ---KRTKLVFVCSPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSL 243 (396)
T ss_dssp ---HTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEES
T ss_pred ---cCcEEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecc
Confidence 47999999999999999988665 89999999999999999875322 111100 00 12567899999
Q ss_pred CCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhc
Q 038499 297 HKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYI 375 (609)
Q Consensus 297 hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~ 375 (609)
+|.+|.| .++|+++.++++ ++.+... ......+++......+. +. +....
T Consensus 244 sK~~~~~G~r~G~~~~~~~~--~~~~~~~-------------------------~~~~~~~~~~~~~~a~~-~~-l~~~~ 294 (396)
T 3jtx_A 244 SKRSNVPGLRSGFVAGDAEL--LKNFLLY-------------------------RTYHGSAMSIPVQRASI-AA-WDDEQ 294 (396)
T ss_dssp TTTSSCGGGCCEEEEECHHH--HHHHHHH-------------------------HHHHTCCCCHHHHHHHH-HH-HHCCH
T ss_pred ccccCCcccceEEEEeCHHH--HHHHHHH-------------------------HhhcccCCCHHHHHHHH-HH-hCCHH
Confidence 9987644 358999998877 2222110 01112233333322221 11 12233
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCc
Q 038499 376 GHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGI 455 (609)
Q Consensus 376 g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI 455 (609)
..+.++++.+++++++.+.|.++ +.+..+ ..+++.+...+ . .+...+++.|.+++||
T Consensus 295 ~~~~~~~~~~~~~~~l~~~l~~~--~~~~~~----~~~~~~~~~~~-~----------------~~~~~~~~~l~~~~gi 351 (396)
T 3jtx_A 295 HVIDNRRLYQEKFERVIPILQQV--FDVKLP----DASFYIWLKVP-D----------------GDDLAFARNLWQKAAI 351 (396)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTT--SCCCCC----SSSSEEEEECT-T----------------SCHHHHHHHHHHHHCE
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc--CCccCC----CeeEEEEEECC-C----------------CCHHHHHHHHHHHCCE
Confidence 45677788888899999999875 223322 34555554444 1 3567888888666799
Q ss_pred EeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 456 QARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 456 ~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.+++|..|.... +. ....++++||+++. ++++++.++++|++++
T Consensus 352 ~v~~g~~~~~~~-~~--------------------~~~~~~~iRis~~~--~~~~i~~~l~~l~~~l 395 (396)
T 3jtx_A 352 QVLPGRFLARDT-EQ--------------------GNPGEGYVRIALVA--DVATCVKAAEDIVSLY 395 (396)
T ss_dssp ECEEGGGGCCCC-TT--------------------CCTTTTEEEEECCS--CHHHHHHHHHHHHHHC
T ss_pred EEeCChHhCCcc-cc--------------------cCCCCCeEEEEEcC--CHHHHHHHHHHHHHHh
Confidence 999998877320 00 00125899999975 9999999999998763
|
| >1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.8e-25 Score=239.25 Aligned_cols=356 Identities=14% Similarity=0.095 Sum_probs=225.5
Q ss_pred CceEEecCCCCCCChHHHHHHHHHhhcCCc-cCC-CCCCchhhHHHHHHHHHHHHHHHHHhC--------CCCCCcEEEe
Q 038499 76 RRLTYADHTASGRSLRYIENYIINNVLPFY-GNT-HTCDSYVGQHTTNMVHEASNYIKKCLG--------GGQEDAMIFC 145 (609)
Q Consensus 76 ~~~vyld~~a~g~~~~~v~~ai~~~~~~~~-~n~-~~~~~~~~~~~~~~~~e~r~~ia~~~g--------~~~~~~vift 145 (609)
...+.|+.+.+...++.+.+++.+...... ... ........+.......++++.++++++ .+++ +|+++
T Consensus 36 ~~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~-~i~~~ 114 (428)
T 1iay_A 36 NGVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE-RVVMA 114 (428)
T ss_dssp TSBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT-SCEEE
T ss_pred CceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChh-hEEEc
Confidence 467788776666667778888875431100 000 000000000000013456666666665 5565 88898
Q ss_pred CChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH-HcCceEEEEecCC--CCCCCHHHHH
Q 038499 146 GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR-QSLAEVVEIGLDD--DGLLDIEALR 222 (609)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~--~g~ld~e~L~ 222 (609)
+|+++++..++.++. ++|| .|+++.+.|+++...+. ..|++++.++.+. ++.+|+++|+
T Consensus 115 -~G~~~ai~~~~~~~~---------------~~gd--~Vl~~~p~y~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~ 176 (428)
T 1iay_A 115 -GGATGANETIIFCLA---------------DPGD--AFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVK 176 (428)
T ss_dssp -EHHHHHHHHHHHHHC---------------CTTC--EEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHH
T ss_pred -cChHHHHHHHHHHhC---------------CCCC--eEEEccCCCcchHHHHHHhcCCEEEEeecCCccCCcCCHHHHH
Confidence 899999998888763 6888 69999999998876554 5799999999874 3478999999
Q ss_pred HHHhhhcc-CCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCCCCC------C
Q 038499 223 SKLELYKD-AKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQTD------G 288 (609)
Q Consensus 223 ~al~~~~~-~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~~------~ 288 (609)
+++++... .++++++++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+... +
T Consensus 177 ~~l~~~~~~~~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (428)
T 1iay_A 177 EAYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCN 256 (428)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSC
T ss_pred HHHHHHHhcCCceEEEEEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCC
Confidence 99974211 136899999999999999999 88999999999999999999875211 1121111000 1
Q ss_pred cc--EEEEcCCCCCCCCC-CcEEEEE-echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH
Q 038499 289 YD--AIFLSTHKFLGGPG-SPGILLM-TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364 (609)
Q Consensus 289 ~D--~v~~S~hK~lggp~-g~G~L~~-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~ 364 (609)
.| +++.|+||++|.|+ .+|++++ ++++ ++.+... ... .+.+.+.+.+
T Consensus 257 ~d~viv~~s~sK~~g~~Glr~G~~~~~~~~~--~~~~~~~-------------------------~~~-~~~~~~~~~a- 307 (428)
T 1iay_A 257 KDLVHIVYSLSKDMGLPGFRVGIIYSFNDDV--VNCARKM-------------------------SSF-GLVSTQTQYF- 307 (428)
T ss_dssp TTSEEEEEESTTTSSCGGGCEEEEEESCHHH--HHHHHHH-------------------------HTT-SCCCHHHHHH-
T ss_pred CCcEEEEecchhhcCCCCceEEEEEeCCHHH--HHHHHHH-------------------------Hhc-ccCCHHHHHH-
Confidence 56 88899999997443 4799999 4555 2222100 000 1122222211
Q ss_pred HHHHHHHHHh----cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCC
Q 038499 365 AALAFWVKEY----IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPL 440 (609)
Q Consensus 365 aal~~~~~~~----~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l 440 (609)
+.+++ .+. ...+.+.++.++.++++.+.|+++ +++++.+ ..+++.+...+ .... .....
T Consensus 308 -~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~-~~~~---------~~~~~ 370 (428)
T 1iay_A 308 -LAAML-SDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-GIKCLKN----NAGLFCWMDLR-PLLR---------ESTFD 370 (428)
T ss_dssp -HHHHT-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCBCCC----SSSSEEEEECG-GGCS---------SSSHH
T ss_pred -HHHHh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCC----CeeEEEEEech-hhcC---------CCchh
Confidence 11111 111 134567778888899999999877 6766543 23444443333 1000 00001
Q ss_pred ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 441 HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 441 ~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
....+.+.|.+++||.+++|..|... .++++||+++ .++++++++++++|++
T Consensus 371 ~~~~l~~~l~~~~gi~v~~~~~~~~~---------------------------~~~~iRis~~-~~~~e~i~~~~~~l~~ 422 (428)
T 1iay_A 371 SEMSLWRVIINDVKLNVSPGSSFECQ---------------------------EPGWFRVCFA-NMDDGTVDIALARIRR 422 (428)
T ss_dssp HHHHHHHHHHHTSCEECEEGGGGTCS---------------------------SSSEEEEECS-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEeCchhhCCC---------------------------CCCEEEEEEe-cCCHHHHHHHHHHHHH
Confidence 24468888877679999987655411 1479999998 5899999999999999
Q ss_pred HHHh
Q 038499 521 IAIY 524 (609)
Q Consensus 521 v~~~ 524 (609)
+++.
T Consensus 423 ~l~~ 426 (428)
T 1iay_A 423 FVGV 426 (428)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 8764
|
| >3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1e-25 Score=239.61 Aligned_cols=346 Identities=14% Similarity=0.059 Sum_probs=227.6
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
.++.+.+++.+.+...+ +. .......++++.+++++|.+ .++++++|+ +++..++..++
T Consensus 34 ~~~~~~~a~~~~~~~~~-------~~---~~~~~~~~l~~~la~~~~~~---~~i~~~~gt-~al~~~l~~~~------- 92 (391)
T 3dr4_A 34 LDGNERDYVLECMDTTW-------IS---SVGRFIVEFEKAFADYCGVK---HAIACNNGT-TALHLALVAMG------- 92 (391)
T ss_dssp CCSSHHHHHHHHHHHTC-------CS---SCSHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHHHHT-------
T ss_pred CCHHHHHHHHHHHHcCC-------cc---CCChHHHHHHHHHHHHhCCC---cEEEeCCHH-HHHHHHHHHcC-------
Confidence 34566777766554211 10 01234778999999999986 578886775 56877777764
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC-CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD-DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTG 247 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG 247 (609)
+++|| .|+++.++|+++...++..|++++.++++ +++.+|+++|+++++ +++++++ ++|+||
T Consensus 93 -------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~v~---~~n~tG 155 (391)
T 3dr4_A 93 -------IGPGD--EVIVPSLTYIASANSVTYCGATPVLVDNDPRTFNLDAAKLEALIT-----PRTKAIM---PVHLYG 155 (391)
T ss_dssp -------CCTTC--EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGSGGGCC-----TTEEEEC---CBCGGG
T ss_pred -------CCCcC--EEEECCCchHHHHHHHHHCCCEEEEEecCccccCcCHHHHHHhcC-----CCceEEE---EECCCC
Confidence 46888 69999999999999999999999999998 467899999999987 5788776 568999
Q ss_pred cccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEc--CCCCCCCCCCcEEEEEechhhccCCCCCCc
Q 038499 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLS--THKFLGGPGSPGILLMTKALYQLGSFPPST 325 (609)
Q Consensus 248 ~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S--~hK~lggp~g~G~L~~~~~~~~l~~~~p~~ 325 (609)
.+.|+++|.++|++||+++|+|++++.+....+..... -.|++++| .||+++|+. .|+++.+++.. .+.+.+..
T Consensus 156 ~~~~~~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~--~~di~~~S~s~~K~l~~g~-gg~~~~~~~~~-~~~~~~~~ 231 (391)
T 3dr4_A 156 QICDMDPILEVARRHNLLVIEDAAEAVGATYRGKKSGS--LGDCATFSFFGNAIITTGE-GGMITTNDDDL-AAKMRLLR 231 (391)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECBTTSSSCCBS-CEEEEESCHHH-HHHHHHHH
T ss_pred ChhhHHHHHHHHHHcCCEEEEECcccccceECCeeecc--cCCEEEEECCCCCcCCcCC-eEEEEECCHHH-HHHHHHHH
Confidence 99999999999999999999999998776544322211 12555555 779998744 68888876531 12222222
Q ss_pred cCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeC
Q 038499 326 CGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILG 405 (609)
Q Consensus 326 ~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~ 405 (609)
.+|... ...++.. ......+...+ .+++.+. ...+.+.+.++.+++++++.+.|.++ ++++..
T Consensus 232 ~~g~~~---------~~~~~~~-~~g~~~~~~~l----~aa~~~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~ 294 (391)
T 3dr4_A 232 GQGMDP---------NRRYWFP-IVGFNYRMTNI----QAAIGLA--QLERVDEHLAARERVVGWYEQKLARL-GNRVTK 294 (391)
T ss_dssp BTTCCT---------TSTTCCS-SCCCBCBCCHH----HHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHGGG-TTSEEC
T ss_pred hcCCCC---------CCccccc-ccccccCCCHH----HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhcC-CccccC
Confidence 222110 0001000 00011111111 2222322 23467788889999999999999988 887776
Q ss_pred C--CCC-CCc-ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCc---ccCChhhhhhcCCChhH
Q 038499 406 N--TST-KRQ-AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGC---ACAGPYGHHLLDLDEAQ 478 (609)
Q Consensus 406 ~--~~~-~r~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~---~ca~p~~~~ll~i~~~~ 478 (609)
+ ... ... .++.+.+.. . ...+...+.+.|.+ .||.+++|. .|.+++... .....+.
T Consensus 295 ~~~~~~~~~~~~~~~i~~~~-~--------------~~~~~~~l~~~L~~-~GI~v~~~~~p~~~~~~~~~~-~~~~~~~ 357 (391)
T 3dr4_A 295 PHVALTGRHVFWMYTVRLGE-G--------------LSTTRDQVIKDLDA-LGIESRPVFHPMHIMPPYAHL-ATDDLKI 357 (391)
T ss_dssp CCCCTTSCCCCSSEEEEECS-S--------------CSSCHHHHHHHHHH-TTCCCEECCCCGGGSGGGGGG-CCTTCHH
T ss_pred cCCCCCCcceeEEEEEEECC-c--------------cchhHHHHHHHHHH-CCCceeecCCccccChhhhhc-CcCCChH
Confidence 5 221 122 234444432 1 11467889999976 599999886 666444331 1111122
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 479 SYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 479 ~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+..+ ..+.+||+++.++|++|+++++++|+++
T Consensus 358 ~~~~-----------~~~~lrl~~~~~~t~edi~~~~~~l~~~ 389 (391)
T 3dr4_A 358 AEAC-----------GVDGLNLPTHAGLTEADIDRVIAALDQV 389 (391)
T ss_dssp HHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHHTT
T ss_pred HHHH-----------HhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence 2221 1478999999999999999999999865
|
| >2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=2.1e-25 Score=238.91 Aligned_cols=334 Identities=12% Similarity=0.009 Sum_probs=227.9
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----C--CCCCCcEEEeCChH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----G--GGQEDAMIFCGSGT 149 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g--~~~~~~vift~sGt 149 (609)
.+++|+.+... +.++.+.+++ +.+.... . .|..... ..++++.+++++ | .+++ +|++| +|+
T Consensus 44 ~~i~l~~~~~~~~~~~~v~~a~-~~l~~~~----~-~y~~~~g----~~~l~~~la~~~~~~~g~~~~~~-~v~~~-~g~ 111 (409)
T 2gb3_A 44 RIHHLNIGQPDLKTPEVFFERI-YENKPEV----V-YYSHSAG----IWELREAFASYYKRRQRVDVKPE-NVLVT-NGG 111 (409)
T ss_dssp EEEECSSCCCCSCCCTHHHHHH-HHTCCSS----C-CCCCTTC----CHHHHHHHHHHHHHTSCCCCCGG-GEEEE-SHH
T ss_pred CEEeccCCCCCCCCCHHHHHHH-HHHhcCC----C-CCCCCCC----cHHHHHHHHHHHHHHhCCCCCHH-HEEEe-CCH
Confidence 57788777665 3567788888 7764311 0 0111111 234555555555 3 3444 89998 788
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhh
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLEL 227 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~ 227 (609)
++++..++.++ +++|| .|+++.+.|+++...++..|++++.++.++ +..+ +++|+++++
T Consensus 112 t~a~~~~~~~~---------------~~~gd--~Vl~~~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~-~~~l~~~l~- 172 (409)
T 2gb3_A 112 SEAILFSFAVI---------------ANPGD--EILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAI-PQNLESFIN- 172 (409)
T ss_dssp HHHHHHHHHHH---------------CCTTC--EEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCC-CTTGGGGCC-
T ss_pred HHHHHHHHHHh---------------CCCCC--EEEEcCCCchhHHHHHHHcCCEEEEeccCCCCCCcc-HHHHHHhhC-
Confidence 88899888876 36888 699999999999988999999999999875 3334 788888887
Q ss_pred hccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc---ccc-CCCCCCCCccEEEEcCCCCC
Q 038499 228 YKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---EID-VRSGQTDGYDAIFLSTHKFL 300 (609)
Q Consensus 228 ~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~id-~~~~~~~~~D~v~~S~hK~l 300 (609)
++++++++++++||||.+.| +++|.++|++||+++|+|++++.+.. ... +.. ..+.|+++.|+||++
T Consensus 173 ----~~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~--~~~~~i~~~s~sK~~ 246 (409)
T 2gb3_A 173 ----ERTKGIVLSNPCNPTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSI--ESDKVVVIDSVSKKF 246 (409)
T ss_dssp ----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGS--CCTTEEEEEESTTTT
T ss_pred ----cCCeEEEECCCCCCCCCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCCCCCCcccc--CCCCEEEEecchhcc
Confidence 57899999999999999975 78899999999999999999876432 112 111 125699999999999
Q ss_pred CCCC-CcEEEEEec-hhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH-HHHHHHHHHHHhcCH
Q 038499 301 GGPG-SPGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM-IRAALAFWVKEYIGH 377 (609)
Q Consensus 301 ggp~-g~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~-~~aal~~~~~~~~g~ 377 (609)
|.|+ .+|++++++ ++ ++.+.+. ..... +.+.+.+. +.+++.. ...+.
T Consensus 247 g~~G~r~G~~~~~~~~l--~~~l~~~------------------------~~~~~-~~~~~~~~a~~~~l~~---~~~~~ 296 (409)
T 2gb3_A 247 SACGARVGCLITRNEEL--ISHAMKL------------------------AQGRL-APPLLEQIGSVGLLNL---DDSFF 296 (409)
T ss_dssp TCGGGCCEEEECSCHHH--HHHHHHH------------------------HHHSC-CCCHHHHHHHHHHHTC---CHHHH
T ss_pred CCccceEEEEEECcHHH--HHHHHHH------------------------HhccC-CCCHHHHHHHHHHHhc---cHHHH
Confidence 7432 389999998 76 2222111 01111 22222221 1222211 12235
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEE-eCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhh----
Q 038499 378 EVIKKQEETYIERALERLLPNQNIKI-LGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDL---- 452 (609)
Q Consensus 378 ~~i~~~~~~l~~~~~~~L~~~p~i~v-~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~---- 452 (609)
+.+.++.+++++++.+.|+++ ++++ ..+ ..+++.+...+ + .+...+.+.|.++
T Consensus 297 ~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~----~~~~~~~~~~~-~----------------~~~~~l~~~l~~~~~~~ 354 (409)
T 2gb3_A 297 DFVRETYRERVETVLKKLEEH-GLKRFTKP----SGAFYITAELP-V----------------EDAEEFARWMLTDFNMD 354 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-TCCCBCCC----SBSSEEEEECS-S----------------SCHHHHHHHHHHSCCBT
T ss_pred HHHHHHHHHHHHHHHHHHHHc-CceeeeCC----CeeEEEEEEeC-C----------------CCHHHHHHHHHhccccc
Confidence 667778888899999999877 7766 443 33555554333 1 3567888888776
Q ss_pred -cCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 453 -FGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 453 -~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+||.+++|..|....+ ..++++||+++ ++++++++++++|+++++..
T Consensus 355 ~~gi~v~~g~~f~~~~~------------------------~~~~~iRis~~--~~~e~i~~~~~~l~~~l~~~ 402 (409)
T 2gb3_A 355 GETTMVAPLRGFYLTPG------------------------LGKKEIRIACV--LEKDLLSRAIDVLMEGLKMF 402 (409)
T ss_dssp TEEEECEEGGGGCSSTT------------------------TTSSEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred cCcEEEeCchHhCCCCC------------------------CCCCEEEEEeC--CCHHHHHHHHHHHHHHHHHh
Confidence 5999998876642100 02589999998 89999999999999988654
|
| >1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7e-25 Score=230.57 Aligned_cols=286 Identities=14% Similarity=0.036 Sum_probs=203.1
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccchHHHHHHc
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
..++|+.+++++|.+++ +|+++ +|+++++..++.++ +++| | .|++..+.|+++...++..
T Consensus 60 ~~~lr~~la~~~~~~~~-~v~~~-~G~~~ai~~~~~~~---------------~~~g~d--~Vl~~~p~~~~~~~~~~~~ 120 (356)
T 1fg7_A 60 PKAVIENYAQYAGVKPE-QVLVS-RGADEGIELLIRAF---------------CEPGKD--AILYCPPTYGMYSVSAETI 120 (356)
T ss_dssp CHHHHHHHHHHHTSCGG-GEEEE-SHHHHHHHHHHHHH---------------CCTTTC--EEEECSSSCTHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChH-HEEEc-CCHHHHHHHHHHHH---------------hCCCCC--EEEEeCCChHHHHHHHHHc
Confidence 46789999999999876 89998 89999999988876 3678 7 6999999999999889999
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHH---HHHHHhCCeEEEeccccCCccc
Q 038499 202 LAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIA---RLLHQYGGFACFDFAASGPYVE 278 (609)
Q Consensus 202 G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~---~la~~~g~~vivD~A~~~~~~~ 278 (609)
|++++.++.++++.+|+++|+++++ +++++++++++||||.+.|.++|. ++|+ +|+++|+|++++.....
T Consensus 121 g~~~~~v~~~~~~~~d~~~l~~~i~------~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~~~~li~De~~~~~~~~ 193 (356)
T 1fg7_A 121 GVECRTVPTLDNWQLDLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRTLLELTR-GKAIVVADEAYIEFCPQ 193 (356)
T ss_dssp TCEEEECCCCTTSCCCHHHHHTSCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHT-TTCEEEEECTTGGGSGG
T ss_pred CCEEEEeeCCCCCCCCHHHHHHHhc------CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-CCCEEEEEccchhhcCC
Confidence 9999999988777899999988775 588999999999999999866655 4555 89999999998754322
Q ss_pred ccCCCC-CCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 279 IDVRSG-QTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 279 id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
.++... ...+.++++.|+||++|.|+ ++|++++++++ ++.+... +... +
T Consensus 194 ~~~~~~~~~~~~~i~~~s~sK~~g~~G~r~G~~~~~~~~--~~~l~~~--------------------------~~~~-~ 244 (356)
T 1fg7_A 194 ASLAGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEV--INLLMKV--------------------------IAPY-P 244 (356)
T ss_dssp GCSGGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHH--HHHHHHH--------------------------SCSS-C
T ss_pred CcHHHHHhhCCCEEEEecchHhhcCchhhhEEEEeCHHH--HHHHHHh--------------------------cCCC-C
Confidence 222211 11245788999999997332 48999998887 2222110 0001 2
Q ss_pred hhHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCC
Q 038499 357 PQVIQMIRAALAFWVKEYI--GHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKT 434 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~--g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~ 434 (609)
.+.... .++.+.+ .+.. ..+.+.++.+++++++.+.|++++++....+. ...++++.+ +
T Consensus 245 ~~~~~~-~a~~~~l-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~---~~~~~~~~~-~------------- 305 (356)
T 1fg7_A 245 LSTPVA-DIAAQAL-SPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS---ETNYILARF-K------------- 305 (356)
T ss_dssp SCHHHH-HHHHHHT-SHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC---SSSEEEEEE-T-------------
T ss_pred CCHHHH-HHHHHHh-cCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEECCC---CCeEEEEEC-C-------------
Confidence 222222 1222222 1111 15667778888899999999888765333332 233443333 2
Q ss_pred CCCCCCChHHHHHHHhhhcCcEecc-CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHH
Q 038499 435 ETDKPLHGPFVATLLNDLFGIQARG-GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513 (609)
Q Consensus 435 ~~~~~l~~~~v~~~L~~~~GI~v~~-G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ 513 (609)
+..++.+.|. ++||.+++ |..|. .++++||+++ +++|+++
T Consensus 306 ------~~~~l~~~L~-~~gI~v~~~g~~~~-----------------------------~~~~iRis~~---~~~e~~~ 346 (356)
T 1fg7_A 306 ------ASSAVFKSLW-DQGIILRDQNKQPS-----------------------------LSGCLRITVG---TREESQR 346 (356)
T ss_dssp ------THHHHHHHHH-HTTEECEECTTSTT-----------------------------CTTEEEEECC---CHHHHHH
T ss_pred ------CHHHHHHHHH-HCCEEEEECCCCCC-----------------------------CCCeEEEEeC---CHHHHHH
Confidence 2567888884 57999997 65543 1379999997 7899999
Q ss_pred HHHHHHHH
Q 038499 514 TLEALEFI 521 (609)
Q Consensus 514 ll~al~~v 521 (609)
++++|+++
T Consensus 347 ~~~~l~~~ 354 (356)
T 1fg7_A 347 VIDALRAE 354 (356)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHhh
Confidence 99998753
|
| >1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-25 Score=236.66 Aligned_cols=313 Identities=17% Similarity=0.135 Sum_probs=212.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+++.......++++.+++++|++ +.|+|+ +|+ ++++.++..+ +++|| .|+++...|++.
T Consensus 108 y~r~~~~~~~~l~~~lA~l~g~~--~~v~~~-sG~-~Ai~~al~~l---------------~~~Gd--~Vi~~~~~y~~~ 166 (445)
T 1qgn_A 108 YGRYGNPTTVVLEEKISALEGAE--STLLMA-SGM-CASTVMLLAL---------------VPAGG--HIVTTTDCYRKT 166 (445)
T ss_dssp BGGGCCHHHHHHHHHHHHHHTCS--EEEEES-CHH-HHHHHHHHHH---------------SCSSC--EEEEETTSCHHH
T ss_pred ccCCCChHHHHHHHHHHHHhCCC--cEEEeC-CHH-HHHHHHHHHH---------------hCCCC--EEEEcCCCchhH
Confidence 34444567889999999999986 366665 898 7888887765 37888 688888999887
Q ss_pred HHHH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc-eEEEEecccCccccccCHHHHHHHHHHhCCeEEEe
Q 038499 195 LLSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP-ILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (609)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~-~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD 269 (609)
...+ +..|++++.++.+ |+++|+++|+ +++ ++|++++++||||.+.|+++|+++||+||+++|+|
T Consensus 167 ~~~~~~~~~~~G~~v~~v~~~-----d~~~l~~ai~-----~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD 236 (445)
T 1qgn_A 167 RIFIETILPKMGITATVIDPA-----DVGALELALN-----QKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID 236 (445)
T ss_dssp HHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHH-----HSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHHHHHcCCEEEEeCCC-----CHHHHHHHhc-----cCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEE
Confidence 6643 4579999999865 8999999998 478 99999999999999999999999999999999999
Q ss_pred ccccCCcccccCCCCCCCCccEEEEcCCCCCCCCC--CcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 270 FAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG--SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 270 ~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~--g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
++++.++..... . .++|+++.|+||++||++ ..|++++++++ ++.+.+.
T Consensus 237 ~a~~~~~~~~~~-~---~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l--~~~l~~~----------------------- 287 (445)
T 1qgn_A 237 GTFATPLNQKAL-A---LGADLVLHSATKFLGGHNDVLAGCISGPLKL--VSEIRNL----------------------- 287 (445)
T ss_dssp CTTTCTTTCCTT-T---TTCSEEEECTTTTTTCSSSCCCEEEEECHHH--HHHHHHH-----------------------
T ss_pred CCCcccccCCcc-c---cCCEEEEECCcccccccccceEEEEEECHHH--HHHHHHH-----------------------
Confidence 999877543222 2 278999999999999654 37999999887 2222110
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce-EEeCCCC-------------CCCcc
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI-KILGNTS-------------TKRQA 413 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i-~v~~~~~-------------~~r~~ 413 (609)
.+...++++...... ++. .........++..+.++++.+.|+++|++ ++..+.- ....+
T Consensus 288 --~~~~g~~~~~~~a~~-~~~----~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ 360 (445)
T 1qgn_A 288 --HHILGGALNPNAAYL-IIR----GMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGG 360 (445)
T ss_dssp --HHHHCCCCCHHHHHH-HHH----HGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCS
T ss_pred --HHHhCCCCCHHHHHH-HHH----hHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEECCCCCCCchHHHHHHhccCCCc
Confidence 001122222222111 111 11122333344555688888999999988 5665521 12567
Q ss_pred eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC---hhhhhhcCCChhHHHHHHHHHhhCC
Q 038499 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG---PYGHHLLDLDEAQSYQIRSAIQKGY 490 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~---p~~~~ll~i~~~~~~~~~~~~~~~~ 490 (609)
+++|.+.. .. -....+...| +.++|.++.|..|+- |.......+..+.-. .
T Consensus 361 ivsf~l~~-~~---------------~~~~~~l~~l-~~~~i~~s~G~~~sl~~~p~~~~h~~~~~~~~~---------~ 414 (445)
T 1qgn_A 361 AVSFEVDG-DL---------------LTTAKFVDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRA---------K 414 (445)
T ss_dssp EEEEEESS-CH---------------HHHHHHHHHC-SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHH---------T
T ss_pred EEEEEECC-CH---------------HHHHHHHHhC-CCceEeccCCCCceeeecccccccccCCHHHHH---------h
Confidence 88888765 10 0133455544 346899999998862 211110011110000 1
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 491 VGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 491 ~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.|+.++.||||++ .||++.+++.|+++++.
T Consensus 415 ~g~~~~~iRlSvG----~Edid~li~~L~~al~~ 444 (445)
T 1qgn_A 415 YGIMDNLVRFSFG----VEDFDDLKADILQALDS 444 (445)
T ss_dssp TTCCSSEEEEECC----SSCHHHHHHHHHHHHHH
T ss_pred cCCCCCeEEEEec----cCCHHHHHHHHHHHHhh
Confidence 2344689999998 36899999999988753
|
| >1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=242.07 Aligned_cols=334 Identities=15% Similarity=0.131 Sum_probs=221.1
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----C---CCCCCcEEEeCChHHHHHHHHHHHhc
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----G---GGQEDAMIFCGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g---~~~~~~vift~sGttaal~~l~~~l~ 161 (609)
.++.+.+++.+.+......... |..... ..++++.+++++ | .+++ +|++| +|+++++..++.++
T Consensus 59 ~~~~v~~a~~~~~~~~~~~~~~--y~~~~g----~~~lr~~la~~l~~~~g~~~~~~~-~v~~t-~G~~~al~~~~~~l- 129 (425)
T 1vp4_A 59 PRKELAEIAKEIIEKEYHYTLQ--YSTTEG----DPVLKQQILKLLERMYGITGLDED-NLIFT-VGSQQALDLIGKLF- 129 (425)
T ss_dssp CHHHHHHHHHHHHHHSHHHHTS--CCCTTC----CHHHHHHHHHHHHHHHCCCSCCGG-GEEEE-EHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHhhcchhhcC--CCCCCC----CHHHHHHHHHHHHhccCCCCCCcc-cEEEe-ccHHHHHHHHHHHh-
Confidence 5677888887776431000000 111111 344555566655 8 4555 89998 88888999888876
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc---CCCceEE-
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD---AKRPILG- 237 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~---~~~~~lv- 237 (609)
+++|| .|++..+.|+++...++..|++++.++.++++ +|+++|++++++... ..+++++
T Consensus 130 --------------~~~gd--~Vl~~~p~y~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~v~ 192 (425)
T 1vp4_A 130 --------------LDDES--YCVLDDPAYLGAINAFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIY 192 (425)
T ss_dssp --------------CCTTC--EEEEEESCCHHHHHHHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEE
T ss_pred --------------CCCCC--EEEEeCCCcHHHHHHHHHcCCEEEEeccCCCC-CCHHHHHHHHHhhhhcccCCCceEEE
Confidence 36888 69999999999998899899999999987765 899999999974100 0268887
Q ss_pred EEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCCCCCCccEEEEcCCCCCCCCC-CcEEE
Q 038499 238 SFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGIL 309 (609)
Q Consensus 238 ~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L 309 (609)
++++++||||.+.| +++|+++|++||+++|+|++++.... ..++..+...+.++++.|++|++| |+ .+|++
T Consensus 193 ~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~-~G~r~G~~ 271 (425)
T 1vp4_A 193 VVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLA-PGLRIGMV 271 (425)
T ss_dssp EECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTC-GGGCEEEE
T ss_pred ECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEeccccccc-cccceEEE
Confidence 58999999999987 46789999999999999999876321 122211111245788999999998 53 47999
Q ss_pred EEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH---hcCHHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE---YIGHEVIKKQEET 386 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~---~~g~~~i~~~~~~ 386 (609)
++++++ ++.+... ......+++.+.+. ++.+++ .. ....+.+.++.++
T Consensus 272 ~~~~~~--~~~l~~~------------------------~~~~~~~~~~~~~~--a~~~~l-~~~~~~~~~~~~~~~~~~ 322 (425)
T 1vp4_A 272 AGSKEF--IRKIVQA------------------------KQSADLCSPAITHR--LAARYL-ERYDLLEQLKPTIELYRR 322 (425)
T ss_dssp ECCHHH--HHHHHHH------------------------HHHHHSSCCHHHHH--HHHHHH-HHSCHHHHTHHHHHHHHH
T ss_pred eeCHHH--HHHHHHH------------------------hhhhcCCCCHHHHH--HHHHHH-hcCCHHHHHHHHHHHHHH
Confidence 999877 2222110 00111222222222 122222 12 1224566677777
Q ss_pred HHHHHHHHhCC-CC---ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcc
Q 038499 387 YIERALERLLP-NQ---NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCA 462 (609)
Q Consensus 387 l~~~~~~~L~~-~p---~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ 462 (609)
.++++.+.|++ .| ++++..+. ...++++.+.. + .+...+.+.|.++ ||.+++|..
T Consensus 323 ~~~~l~~~L~~~~~~~~g~~~~~~~---~g~~~~~~~~~-~----------------~~~~~l~~~l~~~-gi~v~~g~~ 381 (425)
T 1vp4_A 323 KRTVMLNALEEYFSDIPGVKWVKSE---GGLFIWLTLPE-G----------------FDTWEMFEYAKRK-KVFYVPGRV 381 (425)
T ss_dssp HHHHHHHHHHHHSTTSTTCEECCCS---BSSEEEEECCT-T----------------CCTTTTHHHHHHH-TEECEEGGG
T ss_pred HHHHHHHHHHHhCCCCCceEEecCC---ccEEEEEEcCC-C----------------CCHHHHHHHHHHC-CCEEECchh
Confidence 88888888876 35 68876542 22344444332 1 2455678888776 999998876
Q ss_pred cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 463 CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 463 ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
|.... ..++++||+++.. +++|+++++++|+++++..
T Consensus 382 f~~~~-------------------------~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~~~ 418 (425)
T 1vp4_A 382 FKVYD-------------------------EPSPSMRLSFCLP-PDEKIVEGIKRLREVVLEY 418 (425)
T ss_dssp GCTTC-------------------------CCCSEEEEECSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred hcCCC-------------------------CCCCeEEEEeCCC-CHHHHHHHHHHHHHHHHHH
Confidence 65210 0258999999874 8999999999999987654
|
| >3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.9e-25 Score=232.22 Aligned_cols=298 Identities=14% Similarity=0.019 Sum_probs=213.1
Q ss_pred HHHHHHHHHHHhC-CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 123 VHEASNYIKKCLG-GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 123 ~~e~r~~ia~~~g-~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
..++++.++++++ .+++ +|+++ +|+++++..++.++ +++|| .|++..+.|++....++..
T Consensus 65 ~~~l~~~la~~~~~~~~~-~v~~~-~g~~~a~~~~~~~l---------------~~~gd--~Vl~~~~~~~~~~~~~~~~ 125 (375)
T 3op7_A 65 SPAFKKSVSQLYTGVKPE-QILQT-NGATGANLLVLYSL---------------IEPGD--HVISLYPTYQQLYDIPKSL 125 (375)
T ss_dssp CHHHHHHHHTTSSSCCGG-GEEEE-SHHHHHHHHHHHHH---------------CCTTC--EEEEEESSCTHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCChh-hEEEc-CChHHHHHHHHHHh---------------cCCCC--EEEEeCCCchhHHHHHHHc
Confidence 3578889999884 5665 89998 78888898888876 47888 6999999999998888999
Q ss_pred CceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc
Q 038499 202 LAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 202 G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
|++++.++++. ++.+|+++|+++++ ++++++++++++||||.+.| +++|.++|++||+++|+|++++...
T Consensus 126 g~~~~~v~~~~~~~~~~d~~~l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~ 200 (375)
T 3op7_A 126 GAEVDLWQIEEENGWLPDLEKLRQLIR-----PTTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFS 200 (375)
T ss_dssp TCEEEEEEEEGGGTTEECHHHHHHHCC-----TTCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCS
T ss_pred CCEEEEEeccccCCCCCCHHHHHHhhc-----cCCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 99999999874 44589999999998 68999999999999999999 9999999999999999999987643
Q ss_pred ccccCCCC-CCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSG-QTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
.. ..... ...+.++++.|++|.+|.| .++|++++++++. +.+..... ....
T Consensus 201 ~~-~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~v~~~~~l~--~~~~~~~~------------------------~~~~ 253 (375)
T 3op7_A 201 EL-DVPSIIEVYDKGIAVNSLSKTYSLPGIRIGWVAANHQVT--DILRDYRD------------------------YTMI 253 (375)
T ss_dssp SS-CCCCHHHHCTTEEEEEESSSSSSCGGGCCEEEECCHHHH--HHHTTTGG------------------------GTTS
T ss_pred cc-CCCchhhhcCCEEEEeEChhhcCCcccceEEEEeCHHHH--HHHHHHHh------------------------hhcc
Confidence 22 11110 1124568889999999844 3479999988773 33321110 0111
Q ss_pred CChhHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCC
Q 038499 355 GTPQVIQMI-RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTK 433 (609)
Q Consensus 355 gtp~i~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~ 433 (609)
+++.+.+.+ .+++.. .....+.++++.+++++++.+.|++++++.+..+. .+.+.|...+.+
T Consensus 254 ~~~~~~~~~~~~~l~~---~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~~~~~~~~~~~---------- 316 (375)
T 3op7_A 254 CAGVFDDLVAQLALAH---YQEILERNRHILEENLAILDQWIEEEPLVSYIRPA----VVSTSFVKIAVD---------- 316 (375)
T ss_dssp CCCHHHHHHHHHHHHT---HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCS----SSSCEEEEECCS----------
T ss_pred CCCcHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCC----CeEEEeEEcCCC----------
Confidence 122222221 122211 11234566667778888899999888899887552 233333333301
Q ss_pred CCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHH
Q 038499 434 TETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513 (609)
Q Consensus 434 ~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ 513 (609)
.+..++++.|.+++||.+++|..|.. ++++|++++. +.++++.
T Consensus 317 ------~~~~~~~~~ll~~~gi~v~~g~~~~~-----------------------------~~~iRi~~~~--~~~~i~~ 359 (375)
T 3op7_A 317 ------MPMEDFCLQLLQEHGVLLVPGNRFER-----------------------------DGYVRLGFAC--EQETLIK 359 (375)
T ss_dssp ------SCHHHHHHHHHHHHCEECEEGGGGTC-----------------------------TTEEEECCCS--CHHHHHH
T ss_pred ------CCHHHHHHHHHHhCCEEEeChhhhCC-----------------------------CCeEEEEecC--CHHHHHH
Confidence 35677888776567999998876541 4899999874 5589999
Q ss_pred HHHHHHHHHHhc
Q 038499 514 TLEALEFIAIYG 525 (609)
Q Consensus 514 ll~al~~v~~~~ 525 (609)
++++|+++++..
T Consensus 360 ~l~~l~~~l~~~ 371 (375)
T 3op7_A 360 GLEKLSQFLRRF 371 (375)
T ss_dssp HHHHHHHHHGGG
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
|
| >3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=236.22 Aligned_cols=361 Identities=12% Similarity=0.042 Sum_probs=231.2
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccC-CCCCC--chhhHHHHHHHHHHHHHHHHHhC--------CCCCCcEEEe
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGN-THTCD--SYVGQHTTNMVHEASNYIKKCLG--------GGQEDAMIFC 145 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n-~~~~~--~~~~~~~~~~~~e~r~~ia~~~g--------~~~~~~vift 145 (609)
..+.+..+.+..+.+.+.+++.+......-. .+... ...++.......++++.++++++ ++++ +|++|
T Consensus 39 ~~i~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~-~v~~~ 117 (435)
T 3piu_A 39 GIIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-HLVLT 117 (435)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-GEEEE
T ss_pred CeEEeccccccccHHHHHHHHHhCccccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHH-HEEEc
Confidence 4678888777777888888887654321100 00000 00111111223567777777776 5555 89998
Q ss_pred CChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH-HcCceEEEEecCCC--CCCCHHHHH
Q 038499 146 GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR-QSLAEVVEIGLDDD--GLLDIEALR 222 (609)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~~G~~vv~v~~~~~--g~ld~e~L~ 222 (609)
+|+++++..++.++ +++|| .|+++.+.|++....++ ..|++++.++.+++ ..+|+++|+
T Consensus 118 -~gg~~a~~~~~~~l---------------~~~gd--~vl~~~p~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~ 179 (435)
T 3piu_A 118 -AGATSANETFIFCL---------------ADPGE--AVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALE 179 (435)
T ss_dssp -EHHHHHHHHHHHHH---------------CCTTC--EEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHH
T ss_pred -CChHHHHHHHHHHh---------------cCCCC--eEEECCCccccHHHHHHHhcCCEEEEeeCCCccCCcCCHHHHH
Confidence 78888898888876 37888 69999999999888877 68999999998763 468999999
Q ss_pred HHHhhhcc-CCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCcc----cccCCCCCC--------
Q 038499 223 SKLELYKD-AKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQT-------- 286 (609)
Q Consensus 223 ~al~~~~~-~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~-------- 286 (609)
+++++... ..++++|++++++||||.+.+. ++|+++|++||+++|+|++++.... ...+.....
T Consensus 180 ~~l~~~~~~~~~~~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~ 259 (435)
T 3piu_A 180 EAYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENS 259 (435)
T ss_dssp HHHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------
T ss_pred HHHHHHHhcCCCeEEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhcccccccccc
Confidence 99974221 1378999999999999999875 6788899999999999999875211 111111000
Q ss_pred --CCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH-
Q 038499 287 --DGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM- 362 (609)
Q Consensus 287 --~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~- 362 (609)
.+.++++.|+||++|.| .++|+++++++.+ .+.+... ... .+.+...+.
T Consensus 260 ~~~~~~i~i~s~sK~~g~~G~r~G~~~~~~~~~-~~~~~~~-------------------------~~~-~~~~~~~~~~ 312 (435)
T 3piu_A 260 EVWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMV-VAAATKM-------------------------SSF-GLVSSQTQHL 312 (435)
T ss_dssp CGGGGEEEEEESSSSSCCGGGCEEEEEESCHHH-HHHHHHH-------------------------GGG-SCCCHHHHHH
T ss_pred CCCCCEEEEEeeecccCCCceeEEEEEeCCHHH-HHHHHHH-------------------------hhc-CCCCHHHHHH
Confidence 12238889999999733 3589999954431 1111000 001 111222222
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCCh
Q 038499 363 IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHG 442 (609)
Q Consensus 363 ~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (609)
+.+.+.-...-....+.++++.+++++++.+.|.++ ++++..+ ..+++.+...+.... .......
T Consensus 313 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~l~~~~~----------~~~~~~~ 377 (435)
T 3piu_A 313 LSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNG----NAGLFCWVDMRHLLR----------SNTFEAE 377 (435)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCC----CSSSEEEEECGGGSS----------SSSHHHH
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcccCC----CeeEEEEEEcccccc----------cCCchhH
Confidence 122221100001123566777888888999999887 7887754 233444444330110 0000024
Q ss_pred HHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 443 PFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 443 ~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
..+++.|.+++||.+++|..|... .++++||+++.. ++++++.++++|++++
T Consensus 378 ~~~~~~l~~~~gi~v~~g~~~~~~---------------------------~~~~iRi~~~~~-~~e~i~~~l~~l~~~l 429 (435)
T 3piu_A 378 MELWKKIVYEVHLNISPGSSCHCT---------------------------EPGWFRVCFANL-PERTLDLAMQRLKAFV 429 (435)
T ss_dssp HHHHHHHHHTSCEECEEGGGGTCS---------------------------STTEEEEECSSS-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCEEEeCCcccCCC---------------------------CCCEEEEEeeCC-CHHHHHHHHHHHHHHH
Confidence 577788877779999988776521 258999999766 9999999999999988
Q ss_pred Hhcc
Q 038499 523 IYGQ 526 (609)
Q Consensus 523 ~~~~ 526 (609)
+...
T Consensus 430 ~~~~ 433 (435)
T 3piu_A 430 GEYY 433 (435)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 7643
|
| >3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=232.00 Aligned_cols=332 Identities=13% Similarity=0.038 Sum_probs=222.5
Q ss_pred eEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHH
Q 038499 78 LTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 78 ~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~ 154 (609)
++.|+.+... +.|+.|.+++.+.+......+.. .+..++++++.+++++.+|. +++ +|++| +|+++++.
T Consensus 25 ~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~------~g~~~lr~~la~~l~~~~g~~~~~~-~i~~t-~g~~~al~ 96 (376)
T 3ezs_A 25 GLDLGIGEPQFETPKFIQDALKNHTHSLNIYPKS------AFEESLRAAQRGFFKRRFKIELKEN-ELIST-LGSREVLF 96 (376)
T ss_dssp CCBCSSCCCCSCCCHHHHHHHHTTGGGGGSCCCT------TCCHHHHHHHHHHHHHHHSCCCCGG-GEEEE-SSSHHHHH
T ss_pred EEEeCCCCCCCCCCHHHHHHHHHhhhhcCCCCCC------CCCHHHHHHHHHHHHHHhCCCCCHH-HEEEC-cCcHHHHH
Confidence 4444433322 35678888887766322111111 11245556666666666687 554 89998 77888899
Q ss_pred HHHHHhcccchhhHHHHHHhhhcC--CCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRD--EERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~--gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
.++..+ .++ || .|++..+.|+++...++..|++++.++.++++.+++ +|++++. +
T Consensus 97 ~~~~~~---------------~~~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~l~~~~~-----~ 153 (376)
T 3ezs_A 97 NFPSFV---------------LFDYQNP--TIAYPNPFYQIYEGAAKFIKAKSLLMPLTKENDFTP-SLNEKEL-----Q 153 (376)
T ss_dssp HHHHHH---------------TTTCSSC--EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTSCC-CCCHHHH-----H
T ss_pred HHHHHH---------------cCCCCCC--EEEEecCCcHhHHHHHHHcCCEEEEcccCCCCCcch-hHHhhhc-----c
Confidence 888776 367 78 699999999999988999999999999987655565 7777776 4
Q ss_pred CceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCccc---ccCCCC------CCCCccEEEEcCCCCC
Q 038499 233 RPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE---IDVRSG------QTDGYDAIFLSTHKFL 300 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~---id~~~~------~~~~~D~v~~S~hK~l 300 (609)
+++++++++++||||.+.| +++|+++|++||+++|+|++++..... ..+... ...+.++++.|+||++
T Consensus 154 ~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 233 (376)
T 3ezs_A 154 EVDLVILNSPNNPTGRTLSLEELISWVKLALKHDFILINDECYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRS 233 (376)
T ss_dssp HCSEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTT
T ss_pred CCCEEEEcCCCCCcCCCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCHHHccccccccccCcEEEEecchhcc
Confidence 6889999999999999988 556778899999999999998763221 111000 0135679999999999
Q ss_pred CCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHH
Q 038499 301 GGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEV 379 (609)
Q Consensus 301 ggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~ 379 (609)
|.| .++|+++.++++. +.+... ......+++......+. +.+ ......+.
T Consensus 234 g~~G~r~G~~~~~~~~~--~~~~~~-------------------------~~~~~~~~~~~~~~a~~-~~l-~~~~~~~~ 284 (376)
T 3ezs_A 234 SAPGLRSGFIAGDSRLL--EKYKAF-------------------------RAYLGYTSANAIQKASE-AAW-LDDRHAEF 284 (376)
T ss_dssp TCGGGCCEEEEECHHHH--HHHHHH-------------------------HTTTCCCCCHHHHHHHH-HHH-HCSHHHHH
T ss_pred CCccceeEEEeeCHHHH--HHHHHH-------------------------HhhhcCCCChHHHHHHH-HHH-hCcHHHHH
Confidence 733 3589999988872 222110 00111222322222211 111 12223577
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc
Q 038499 380 IKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG 459 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~ 459 (609)
+.++.+++++++.+.|+ ++. . +..+.+.+...+ +...+.+.|.+++||.+++
T Consensus 285 ~~~~~~~~~~~l~~~l~---~~~--~----~~~~~~~~~~~~-------------------~~~~~~~~l~~~~gi~v~~ 336 (376)
T 3ezs_A 285 FRNIYANNLKLARKIFK---NTL--I----YPYSFYVYLPVQ-------------------NGENFAKTLYQNEGIITLP 336 (376)
T ss_dssp HHHHHHHHHHHHHHHST---TCC--C----CSBSSEEEEECS-------------------CHHHHHHHHHHHHCCBCEE
T ss_pred HHHHHHHHHHHHHHHhc---CCC--C----CCcceEEEEECC-------------------CHHHHHHHHHHhCCEEEeC
Confidence 78888888999999887 333 1 233444444333 3567888887657999999
Q ss_pred CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 460 GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 460 G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
|..|..+. ..++++||+++. +++|++.++++|++++++
T Consensus 337 g~~~~~~~-------------------------~~~~~iRis~~~--~~~~i~~~l~~l~~~l~~ 374 (376)
T 3ezs_A 337 ALYLGRNR-------------------------IGADYVRLALVY--DTPLLEKPLEIIETYREN 374 (376)
T ss_dssp GGGGCSTT-------------------------TTTTEEEEECCS--CHHHHHHHHHHHHHHHCC
T ss_pred cHHhCCCC-------------------------CCCCeEEEEEcC--CHHHHHHHHHHHHHHHHh
Confidence 98776210 025899999974 999999999999988753
|
| >3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.93 E-value=8e-25 Score=234.28 Aligned_cols=343 Identities=16% Similarity=0.123 Sum_probs=218.7
Q ss_pred CCChHHHHHHHHHhhcCCc--cCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 87 GRSLRYIENYIINNVLPFY--GNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~--~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
.+.++.|.+++.+.+...+ ++++...+........+.+.+++.+++++|++++ +|+++ +|+ +++..++.++
T Consensus 35 ~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~-~i~~~-sGt-~a~~~~~~~~---- 107 (417)
T 3n0l_A 35 NFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFA-NVQPN-SGS-QANQGVYAAL---- 107 (417)
T ss_dssp CCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCS-SHH-HHHHHHHHHH----
T ss_pred CCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHhCCCCc-ceEec-cHH-HHHHHHHHHh----
Confidence 3457889999988775444 3333221111223345566788899999999765 67665 885 6788877766
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchHHHH---HH--cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEE
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW---RQ--SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSF 239 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~--~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~ 239 (609)
+++|| .|++..++|+++...+ .. .+..++.++.+.++.+|+++|++++++ ++++++++
T Consensus 108 -----------~~~gd--~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~v~~ 170 (417)
T 3n0l_A 108 -----------INPGD--KILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKK----EKPKLIVC 170 (417)
T ss_dssp -----------SCTTC--EEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHH----HCCSEEEE
T ss_pred -----------cCCCC--EEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHh----cCCeEEEE
Confidence 47898 6999999998765522 22 345567777777788999999999984 37888888
Q ss_pred ecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe-chhhcc
Q 038499 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT-KALYQL 318 (609)
Q Consensus 240 s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~-~~~~~l 318 (609)
++++| |.+.|+++|.++|++||+++|+|++|+.+....+.......+.|++++|+||+++||.| |+++++ +++.
T Consensus 171 ~~~~~--G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-G~~~~~~~~~~-- 245 (417)
T 3n0l_A 171 GASAY--ARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRG-GIIMTNDEELA-- 245 (417)
T ss_dssp CCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSC-EEEEESCHHHH--
T ss_pred CCccc--CccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCe-eEEEECCHHHH--
Confidence 87765 99999999999999999999999998654432221111112569999999999988875 999998 4552
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN 398 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~ 398 (609)
+.+.+.... ...++++......++.++......+.+.+.++..++++++.+.|.+
T Consensus 246 ~~~~~~~~~------------------------~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~- 300 (417)
T 3n0l_A 246 KKINSAIFP------------------------GIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMD- 300 (417)
T ss_dssp HHHHHHHTT------------------------TTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHhhhhCC------------------------cccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-
Confidence 222111000 0123444333332222222111234567788888889999999987
Q ss_pred CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhH
Q 038499 399 QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQ 478 (609)
Q Consensus 399 p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~ 478 (609)
.++++.... ....++++.+.+ . .++..++.+.|. +.||.++.+.....+.. .
T Consensus 301 ~g~~~~~~~--~~~~~~~~~~~~-~---------------~~~~~~~~~~l~-~~gi~v~~~~~~~~~~~-~-------- 352 (417)
T 3n0l_A 301 RKFKLVSDG--TDNHLVLMSFLD-R---------------EFSGKDADLALG-NAGITANKNTVPGEIRS-P-------- 352 (417)
T ss_dssp TTCEEGGGS--CSSSEEEEECTT-S---------------SSCHHHHHHHHH-HTTEECEECCCTTCCSC-T--------
T ss_pred CCceeccCC--CCceEEEEEccc-C---------------CCCHHHHHHHHH-HcCeEEeccccCCCCcc-c--------
Confidence 588887531 123344444433 1 146778888885 46999986542211000 0
Q ss_pred HHHHHHHHhhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHhc
Q 038499 479 SYQIRSAIQKGYVGVKPGWTRISFPYY----MSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 479 ~~~~~~~~~~~~~~~~~g~iRls~~~~----~t~eeid~ll~al~~v~~~~ 525 (609)
..+..+|++++.. .+++|+++++++|+++++..
T Consensus 353 --------------~~~~~~ri~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 389 (417)
T 3n0l_A 353 --------------FITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDV 389 (417)
T ss_dssp --------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred --------------CCCCeeEecCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 0246799987533 57999999999999998653
|
| >3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=235.21 Aligned_cols=344 Identities=12% Similarity=0.026 Sum_probs=227.5
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----CCCCCCcEEEeCChHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----GGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g~~~~~~vift~sGtta 151 (609)
+++.|..+..+ +.++.|.+++.+.+.....+.....| .......++++.+++++ +.+++ +|+++ +|+++
T Consensus 70 ~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y----~~~~g~~~lr~~ia~~~~~g~~~~~~-~i~~t-~G~~~ 143 (449)
T 3qgu_A 70 KIISLGIGDTTEPLPKYIADAMAKAAAGLATREGYSGY----GAEQGQGALREAVASTFYGHAGRAAD-EIFIS-DGSKC 143 (449)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHGGGGSCCCCCS----TTTTCCHHHHHHHHHHHHTTTTCCGG-GEEEE-SCHHH
T ss_pred CEEEeeCCCCCCCCCHHHHHHHHHHHHhhccccCCCCC----CCCCCcHHHHHHHHHHHHcCCCCCHH-HEEEc-cCHHH
Confidence 56777666443 46778999998887654322221111 11123567888888887 66666 89998 88888
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCce----------EEEEecCCCCCCCHHHH
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAE----------VVEIGLDDDGLLDIEAL 221 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~----------vv~v~~~~~g~ld~e~L 221 (609)
++..+ ..+ +++|| .|+++.+.|+++...++..|++ ++.++++.++.++.+ +
T Consensus 144 al~~~-~~l---------------~~~gd--~Vl~~~p~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~-~ 204 (449)
T 3qgu_A 144 DIARI-QMM---------------FGSKP--TVAVQDPSYPVYVDTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPD-L 204 (449)
T ss_dssp HHHHH-HHH---------------HCSSS--CEEEEESCCTHHHHHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCC-G
T ss_pred HHHHH-HHH---------------hCCCC--EEEEcCCCChhHHHHHHHcCCcccccccccceeEEEecccccCCcCC-h
Confidence 89887 444 37888 5999999999999999999998 999998764323222 1
Q ss_pred HHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCC----cccccCCCCC-CCCccEEE
Q 038499 222 RSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP----YVEIDVRSGQ-TDGYDAIF 293 (609)
Q Consensus 222 ~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~----~~~id~~~~~-~~~~D~v~ 293 (609)
.+. ++++++++++++||||.+.+ +++|+++|++||+++|+|++++.. ..+..+.... ..+.++++
T Consensus 205 ----~~~---~~~~~v~l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~ 277 (449)
T 3qgu_A 205 ----SKA---KRTDIIFFCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIET 277 (449)
T ss_dssp ----GGC---CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEE
T ss_pred ----hHc---CCCCEEEEeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEE
Confidence 111 47889999999999999987 677888899999999999998752 2222332221 12457899
Q ss_pred EcCCCCCCC-CCCcEEEEEechhhccCC-CCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHH
Q 038499 294 LSTHKFLGG-PGSPGILLMTKALYQLGS-FPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWV 371 (609)
Q Consensus 294 ~S~hK~lgg-p~g~G~L~~~~~~~~l~~-~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~ 371 (609)
.|++|++|. ..++|++++++++ ++. ..+. ...+.. .......+++...... +++.+.
T Consensus 278 ~s~sK~~g~~G~r~G~~~~~~~~--~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~a-~~~~l~ 336 (449)
T 3qgu_A 278 CSFSKYAGFTGVRLGWTVVPKAL--KYANGEPV-----------------HADWNR-VMTTCFNGASNIVQAG-GLACLQ 336 (449)
T ss_dssp EECSGGGTCTTCCCEEEECCTTC--BCTTSCBH-----------------HHHHHH-HHHHSCCCCCHHHHHH-HHHHTS
T ss_pred ecchhhcCCccceeEEEecCHHH--HhhhhhhH-----------------HHHHHH-HhhcccCCCCHHHHHH-HHHHHh
Confidence 999999983 3458999998887 332 0000 000000 0111122223222222 112211
Q ss_pred H-HhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHh
Q 038499 372 K-EYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLN 450 (609)
Q Consensus 372 ~-~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 450 (609)
. .....+.+.++.+++++++.+.|+++ ++++..+. ...++++.+.. .+..++++.|.
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~~~~~------------------~~~~~~~~~l~ 394 (449)
T 3qgu_A 337 PEGLKEMNAMIKFYKENAQILKTTFTEM-GFSVYGGD---DAPYIWVGFPG------------------KPSWDVFAEIL 394 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEESS---SSSEEEEECTT------------------SCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHHHHHHHHHHHC-CCeeeCCC---CeeEEEEECCC------------------CCHHHHHHHHH
Confidence 1 12235677888888999999999887 77777552 23344333322 35778888887
Q ss_pred hhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 451 DLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 451 ~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++||.+++|..|... .++++|||+. .++++++.++++|++++++
T Consensus 395 ~~~gI~v~pg~~f~~~---------------------------~~~~iRis~~--~~~e~i~~~l~~l~~~~~~ 439 (449)
T 3qgu_A 395 ERCNIVTTPGSGYGPA---------------------------GEGFVRASAF--GSRENILEAVRRFKEAYGK 439 (449)
T ss_dssp HHHCEECEEGGGGCGG---------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHC-
T ss_pred HHCCEEEecchHhCCC---------------------------CCCeEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 7779999999877621 1589999964 5999999999999998754
|
| >3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=225.12 Aligned_cols=319 Identities=13% Similarity=0.061 Sum_probs=220.7
Q ss_pred ceEEecCCCC-CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 77 RLTYADHTAS-GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 77 ~~vyld~~a~-g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
.++.|..+.. -+.++.+.+++.+.+...+.++... ..++|+++++++|++++ +|++| +|+++++..
T Consensus 16 ~~id~~~~~~~~~~~~~v~~a~~~~~~~~~~y~~~~-----------~~~lr~~la~~~~~~~~-~i~~t-~g~~~al~~ 82 (350)
T 3fkd_A 16 EIVNFSTTVWTDGDKDHLEKHLVENLNCIRHYPEPD-----------AGTLRQMLAKRNSVDNN-AILVT-NGPTAAFYQ 82 (350)
T ss_dssp CCEECSCCSCCCSCCHHHHHHHHHTGGGGGSCCCTT-----------CHHHHHHHHHHTTCCGG-GEEEE-SHHHHHHHH
T ss_pred cEEEccCCCCCCCCCHHHHHHHHHhHhHHhcCCCCc-----------HHHHHHHHHHHhCcCHH-HEEEc-CCHHHHHHH
Confidence 4556654432 3456788898888774333333221 14689999999999876 89998 889989999
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec-CCCCCCCHHHHHHHHhhhccCCCc
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL-DDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
++..+ . || .|+++.+.|+++...++..|++++.++. ++.+.+++ +++
T Consensus 83 ~~~~l----------------~-gd--~Vi~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~-------------~~~ 130 (350)
T 3fkd_A 83 IAQAF----------------R-GS--RSLIAIPSFAEYEDACRMYEHEVCFYPSNEDIGEADF-------------SNM 130 (350)
T ss_dssp HHHHT----------------T-TC--EEEEEESCCHHHHHHHHHTTCEEEEEETTSCGGGSCC-------------TTC
T ss_pred HHHHH----------------C-CC--EEEEeCCCcHHHHHHHHHcCCeEEEEecCCccccCcc-------------CCC
Confidence 88765 3 77 6999999999999899999999999998 65444443 368
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHhC-CeEEEeccccCCcccccC--CCCCCCCccEEEEcCCCCCCCC-CCcEEEE
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQYG-GFACFDFAASGPYVEIDV--RSGQTDGYDAIFLSTHKFLGGP-GSPGILL 310 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~g-~~vivD~A~~~~~~~id~--~~~~~~~~D~v~~S~hK~lggp-~g~G~L~ 310 (609)
+++++++++||||.+.|.++|.++++.++ .++|+|++++........ ......+.++++.|++|++|.| .++|+++
T Consensus 131 ~~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~r~G~~~ 210 (350)
T 3fkd_A 131 DFCWLCNPNNPDGRLLQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAYGIPGLRIGYIV 210 (350)
T ss_dssp SEEEEESSCTTTCCCCCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHHSCGGGCCEEEE
T ss_pred CEEEEeCCCCCcCCCCCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhccCcchheEeEE
Confidence 89999999999999999999999999876 799999998643221110 1111124568899999999833 4589999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYI-GHEVIKKQEETYIE 389 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~-g~~~i~~~~~~l~~ 389 (609)
+++++. +.+.... ...+++..... ++.+++ .+.. ..+.+.+.. ++++
T Consensus 211 ~~~~~~--~~~~~~~---------------------------~~~~~~~~~~~-~~~~~l-~~~~~~~~~~~~~~-~~~~ 258 (350)
T 3fkd_A 211 ANKDFM--KRVAAFS---------------------------TPWAVNALAIE-AAKFIL-IHPAQFTLPIRKWQ-RNTV 258 (350)
T ss_dssp CCHHHH--HHHHTTC---------------------------CTTCSCHHHHH-HHHHHH-HCTTTTCCCHHHHH-HHHH
T ss_pred eCHHHH--HHHHHhC---------------------------CCCCCCHHHHH-HHHHHH-hCHHHHHHHHHHHH-HHHH
Confidence 988772 2221110 01122322221 122222 2221 123344443 7788
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
++.+.|+++|++++..+ ..+++++.+.. .+...+.+.|.+++||.+++|..|.+.
T Consensus 259 ~l~~~L~~~~~~~~~~~----~~~~~~~~~~~------------------~~~~~l~~~L~~~~gi~v~~g~~f~~~--- 313 (350)
T 3fkd_A 259 DFITALNRLDGVEVHPS----GTTFFLLRLKK------------------GTAAELKKYMLEEYNMLIRDASNFRGL--- 313 (350)
T ss_dssp HHHHHHHHSTTEEECCC----SSSEEEEEESS------------------SCHHHHHHHHHHTTCEECEECTTSTTC---
T ss_pred HHHHHHhcCCCcEECCC----CCcEEEEECCC------------------CCHHHHHHHHHHHCCEEEEeCccCCCC---
Confidence 88899988889988643 33444444433 146788888876479999999877521
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++|||++ +++|+++++++|+.+.+.
T Consensus 314 ------------------------~~~~iRis~~---~~~~~~~l~~al~~~~~~ 341 (350)
T 3fkd_A 314 ------------------------DESYVRITTQ---RPAQNQLFIKALETFLEK 341 (350)
T ss_dssp ------------------------CTTEEEEECC---CHHHHHHHHHHHHHHHTC
T ss_pred ------------------------CCCEEEEEcC---CHHHHHHHHHHHHHHHHH
Confidence 2589999987 899999999999998754
|
| >2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-25 Score=243.09 Aligned_cols=283 Identities=14% Similarity=0.093 Sum_probs=209.3
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
....++++++++ +|++ ++++++ +|+++++..++.++ +++|| .|+++..+|+++..++..
T Consensus 57 ~~~~~~~~~la~-~g~~--~~v~~~-~G~t~a~~~~~~a~---------------~~~gd--~Vlv~~~~h~s~~~~~~~ 115 (446)
T 2x3l_A 57 EVILKSMKQVEK-HSDY--DGYFLV-NGTTSGILSVIQSF---------------SQKKG--DILMARNVHKSVLHALDI 115 (446)
T ss_dssp SHHHHHHHHHCS-CTTE--EEEEES-SHHHHHHHHHHHTT---------------TTSSS--CEEECTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHh-cCCC--ceEEEe-CCHHHHHHHHHHHh---------------cCCCC--EEEEecCccHHHHHHHHH
Confidence 356889999999 9987 378887 88888898887765 37888 699999999999999999
Q ss_pred cCceEEEEec--CCC----CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccC
Q 038499 201 SLAEVVEIGL--DDD----GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 201 ~G~~vv~v~~--~~~----g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~ 274 (609)
.|++++.++. +++ +.+|+++| +. ++++++++++ +|+||.+.|+++|+++||+||+++++|+|++.
T Consensus 116 ~G~~~~~v~~~~~~~~~~~~~~d~~~l---~~-----~~~~~v~~~~-~n~~G~~~~l~~I~~l~~~~~~~livDea~~~ 186 (446)
T 2x3l_A 116 SQQEGHFIETHQSPLTNHYNKVNLSRL---NN-----DGHKLVVLTY-PNYYGETFNVEEVIKSLHQLNIPVLIDEAHGA 186 (446)
T ss_dssp HTCCEEECEEEECTTTSSEEEEEC---------------CCEEEEES-SCTTSCCCCHHHHHHHHHHTTCCEEEECTTCT
T ss_pred cCCeEEEEeCeeccccCcCCCCCHHHH---cC-----CCceEEEEEC-CCCCeEecCHHHHHHHHHhcCCeEEEcchhhh
Confidence 9999999988 654 56788887 33 5789999999 66799999999999999999999999999886
Q ss_pred Ccc-----cccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccc
Q 038499 275 PYV-----EIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 275 ~~~-----~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (609)
+. +.+.... ++|+++.|+||+++|+.|+|++++++++ ++ ..+... ..
T Consensus 187 -~~~f~~~~~~~~~~---g~Di~~~S~~K~l~~~~g~g~l~~~~~~--i~-~~~~~~---------------------~~ 238 (446)
T 2x3l_A 187 -HFGLQGFPDSTLNY---QADYVVQSFHKTLPALTMGSVLYIHKNA--PY-RENIIE---------------------YL 238 (446)
T ss_dssp -TTTSTTSCCCGGGG---TCSEEEECHHHHSSSCTTCEEEEEETTC--TT-HHHHHH---------------------HH
T ss_pred -hhccCCCCCChHHc---CCCEEEECCccccccccccEEEEEcCCc--CC-HHHHHH---------------------HH
Confidence 33 2233222 6799999999988888889999999887 22 111100 01
Q ss_pred ccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCc
Q 038499 350 ERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 350 ~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
..+..++++..... .+++.++ +..|.+.+.++.+++++++++. +++++++.+ ...+++.+.+
T Consensus 239 ~~~~~~s~~~~~~aal~~a~~~l--~~~g~~~~~~~~~~l~~~l~~~-----g~~~~~~~~---~~~l~i~~~~------ 302 (446)
T 2x3l_A 239 SYFQTSSPSYLIMASLESAAQFY--KTYDSTLFFAKRAQLIECLENK-----GFEMLQVDD---PLKLLIKYEG------ 302 (446)
T ss_dssp HHHSCSSCCHHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHHHHH-----TCEEEECSS---TTEEEEECTT------
T ss_pred HHHcCCCchHHHHHHHHHHHHHH--HHhCHHHHHHHHHHHHHHHHHc-----CCEECcCCC---CeEEEEEeCC------
Confidence 23345666665543 3334443 4556666788888888888887 677776531 1234444432
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhcCcEec-cCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCC
Q 038499 428 LGENTKTETDKPLHGPFVATLLNDLFGIQAR-GGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYM 506 (609)
Q Consensus 428 ~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~-~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~ 506 (609)
++...+.+.|.++ ||.++ +| .+++|++++.++
T Consensus 303 ------------~~~~~l~~~L~~~-GI~v~~~g----------------------------------~~~iRi~~~~~~ 335 (446)
T 2x3l_A 303 ------------FTGHDIQNWFMNA-HIYLELAD----------------------------------DYQALAILPLWH 335 (446)
T ss_dssp ------------SCHHHHHHHHHHT-TEEESEEC----------------------------------SSCEEEECCCCC
T ss_pred ------------cCHHHHHHHHHHC-CCEEEecC----------------------------------CCEEEEEeecCC
Confidence 4678899999776 99987 22 268999999999
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 038499 507 SNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 507 t~eeid~ll~al~~v~~~~ 525 (609)
|++|+ +++++|+++.+..
T Consensus 336 t~e~i-~l~~aL~~~~~~~ 353 (446)
T 2x3l_A 336 HDDTY-LFDSLLRKIEDMI 353 (446)
T ss_dssp TTCCC-CHHHHHHHHHTCC
T ss_pred CHHHH-HHHHHHHHHHHhh
Confidence 99999 9999999998654
|
| >2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.5e-24 Score=230.70 Aligned_cols=313 Identities=15% Similarity=0.095 Sum_probs=213.0
Q ss_pred HHHHHHHHHHHHHHhCCCC--------CCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCc
Q 038499 120 TNMVHEASNYIKKCLGGGQ--------EDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEH 191 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~--------~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h 191 (609)
.++++.+.+++++..|.+. .++|++| +|+++++..++.++ +++|| .|++..+.|
T Consensus 81 ~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t-~G~~~al~~~~~~l---------------~~~gd--~Vlv~~p~y 142 (425)
T 2r2n_A 81 PELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVT-SGSQQGLCKVFEMI---------------INPGD--NVLLDEPAY 142 (425)
T ss_dssp HHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEE-SSHHHHHHHHHHHH---------------CCTTC--EEEEESSCC
T ss_pred HHHHHHHHHHHHHhcCCCCccccccCCcCcEEEe-CcHHHHHHHHHHHh---------------CCCCC--EEEEeCCCc
Confidence 3566677777777778764 2489998 88888999998887 37888 699999999
Q ss_pred cchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhc-------cCCCceEEEE-ecccCccccccCHH---HHHHHHH
Q 038499 192 HSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYK-------DAKRPILGSF-SACSNVTGIYSDTR---SIARLLH 260 (609)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~-------~~~~~~lv~~-s~~sn~TG~~~dl~---~I~~la~ 260 (609)
+++...++..|++++.++.++++ +|+++|++++++.. ..++++++++ ++++||||.+.+.+ +|+++|+
T Consensus 143 ~~~~~~~~~~g~~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~ 221 (425)
T 2r2n_A 143 SGTLQSLHPLGCNIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELAR 221 (425)
T ss_dssp HHHHHHHGGGTCEEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCEEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHH
Confidence 99998899999999999987665 89999999997311 0135787765 79999999999866 8999999
Q ss_pred HhCCeEEEeccccC----CcccccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeec
Q 038499 261 QYGGFACFDFAASG----PYVEIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVN 335 (609)
Q Consensus 261 ~~g~~vivD~A~~~----~~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~ 335 (609)
+||+++|+|++++. +....++..+...+.++++.|++|+++ |+ .+|++++++++ ++.+...
T Consensus 222 ~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~-~GlRiG~~~~~~~l--~~~l~~~----------- 287 (425)
T 2r2n_A 222 KYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIIS-SGLRIGFLTGPKPL--IERVILH----------- 287 (425)
T ss_dssp HTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTC-STTCCEEEEEEHHH--HHHHHHH-----------
T ss_pred HcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhcc-CccceEEEecCHHH--HHHHHHH-----------
Confidence 99999999999863 222233333322345788999999997 53 48999999887 2222110
Q ss_pred ccccccccccccccccccCCChhHHHHH-HHHHHHHHHH--hcCHHHHHHHHHHHHHHHHHHhCC-CCce-EEeCCCCCC
Q 038499 336 GFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKE--YIGHEVIKKQEETYIERALERLLP-NQNI-KILGNTSTK 410 (609)
Q Consensus 336 ~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~--~~g~~~i~~~~~~l~~~~~~~L~~-~p~i-~v~~~~~~~ 410 (609)
......+.+.+.+.+ .+++..+..+ ....+.+.++.++.++++.+.|++ +|++ .+..+
T Consensus 288 -------------~~~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p---- 350 (425)
T 2r2n_A 288 -------------IQVSTLHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVP---- 350 (425)
T ss_dssp -------------HHTTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCC----
T ss_pred -------------HHHhcCCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCC----
Confidence 000111222232221 2222211000 122456667777888888888876 5776 34433
Q ss_pred CcceEEEEeccCCCCCcCCCCCCCCCCCCCChHH-HHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhC
Q 038499 411 RQAILSFNIHSSTINSSLGENTKTETDKPLHGPF-VATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKG 489 (609)
Q Consensus 411 r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~-v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~ 489 (609)
..+++.+...+ .. .+..+ +.+.|. +.||.+++|..|..+...
T Consensus 351 ~~g~~~~~~~~-~~---------------~~~~~~~~~~l~-~~gv~v~pg~~f~~~~~~-------------------- 393 (425)
T 2r2n_A 351 AAGMFLWIKVK-GI---------------NDVKELIEEKAV-KMGVLMLPGNAFYVDSSA-------------------- 393 (425)
T ss_dssp SBSSEEEEEET-TC---------------SCCHHHHHTHHH-HTTEECEEGGGGSSSTTS--------------------
T ss_pred CceEEEEEEeC-CC---------------CCHHHHHHHHHH-HCCcEEechhhhcCCCCC--------------------
Confidence 34555444443 11 23344 567775 469999998877532100
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 490 ~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..+++|||++. .++++++.++++|++++++
T Consensus 394 ----~~~~iRis~~~-~~~~~i~~~~~~l~~~l~~ 423 (425)
T 2r2n_A 394 ----PSPYLRASFSS-ASPEQMDVAFQVLAQLIKE 423 (425)
T ss_dssp ----CCCEEEEECSS-CCHHHHHHHHHHHHHHHHH
T ss_pred ----CCCEEEEEeCC-CCHHHHHHHHHHHHHHHHH
Confidence 14899999984 5999999999999988764
|
| >3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-25 Score=241.77 Aligned_cols=358 Identities=13% Similarity=0.023 Sum_probs=213.5
Q ss_pred ceE-EecCCCCCCChHHHHHHHHHhhcCCccC-------CCCCCchhhHHHHHHHHHHHHHHHHHh------CCCCCCcE
Q 038499 77 RLT-YADHTASGRSLRYIENYIINNVLPFYGN-------THTCDSYVGQHTTNMVHEASNYIKKCL------GGGQEDAM 142 (609)
Q Consensus 77 ~~v-yld~~a~g~~~~~v~~ai~~~~~~~~~n-------~~~~~~~~~~~~~~~~~e~r~~ia~~~------g~~~~~~v 142 (609)
+++ +|.++.... ++.+.+++.+.+...+.+ ++...+..++.......++|+.+++++ +++++ +|
T Consensus 32 ~~i~~l~~g~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~-~i 109 (444)
T 3if2_A 32 QPVNMLGGGNPAK-IDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSE-NI 109 (444)
T ss_dssp SCCEECSCCCCCC-CHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GE
T ss_pred hhhhccCCCCCCc-ccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHH-HE
Confidence 466 777665443 445556665555554445 320001112222222455666666665 45665 89
Q ss_pred EEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCC------------ceEEEEC-CCCccchHHH------HHHcCc
Q 038499 143 IFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE------------RWVVFVG-PHEHHSNLLS------WRQSLA 203 (609)
Q Consensus 143 ift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd------------~~~Vlv~-~~~h~s~~~~------~~~~G~ 203 (609)
+|| +|++++++.++.++. ++|| ...|+++ .++|+.+... +...|.
T Consensus 110 ~~t-~G~t~al~~~~~~l~---------------~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~ 173 (444)
T 3if2_A 110 ALT-NGSQNAFFYLFNLFG---------------GAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP 173 (444)
T ss_dssp EEE-SSHHHHHHHHHHHSS---------------EEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCC
T ss_pred EEe-cCcHHHHHHHHHHHh---------------CCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCc
Confidence 999 788889999888763 4554 0135554 7788776543 234578
Q ss_pred eEEEEecCC-CC----CCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCC
Q 038499 204 EVVEIGLDD-DG----LLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 204 ~vv~v~~~~-~g----~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~ 275 (609)
.++.++.+. +| .+|+++|++++.+. .++++++++++++||||.+.| +++|+++|++||+++|+|++++.+
T Consensus 174 ~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~--~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~ 251 (444)
T 3if2_A 174 HIDEVTHDGEEGFFKYRVDFEALENLPALK--EGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMP 251 (444)
T ss_dssp EEEEEEETTEEEEEEEECCHHHHHTCHHHH--TTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTT
T ss_pred eEEecccccccCccccCCCHHHHHHHHHhc--CCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCc
Confidence 888888875 33 68999999884210 068999999999999999999 788999999999999999998754
Q ss_pred cccccCCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEIDVRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
......... ...+.++++.|+||++++..++|++++++++. +.+... .....
T Consensus 252 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~l~--~~~~~~------------------------~~~~~ 305 (444)
T 3if2_A 252 FPNIIYSDAHLNWDNNTILCFSLSKIGLPGMRTGIIVADAKVI--EAVSAM------------------------NAVVN 305 (444)
T ss_dssp TTCCBCSCCCCCCCTTEEEEEESTTTTCGGGCCEEEECCHHHH--HHHHHH------------------------HHHHH
T ss_pred ccccccccccccCCCCEEEEechhhccCCCCceEEEEECHHHH--HHHHHH------------------------HHhcc
Confidence 322221111 11356899999999843334689999888872 222111 00011
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCH-----HHHHHHHHHHHHHHHHHhCC-CC--ceEEeCCCCCCCcceEEEEeccCCCC
Q 038499 354 GGTPQVIQMIRAALAFWVKEYIGH-----EVIKKQEETYIERALERLLP-NQ--NIKILGNTSTKRQAILSFNIHSSTIN 425 (609)
Q Consensus 354 ~gtp~i~~~~~aal~~~~~~~~g~-----~~i~~~~~~l~~~~~~~L~~-~p--~i~v~~~~~~~r~~~~~f~~~~~~~~ 425 (609)
.+++.+.+.+. ..++ +.... +.+.++.++.++.+.+.|.+ ++ ++.+..+. .+.+.+...+ ..
T Consensus 306 ~~~~~~~~~a~--~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~g~~~~~~~~-~~- 375 (444)
T 3if2_A 306 LAPTRFGAAIA--TPLV--ANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDYPLMIHKPE----GAIFLWLWFK-DL- 375 (444)
T ss_dssp SSCCCHHHHHH--HHHH--HTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSSSEEEECCC----BSSEEEEEET-TC-
T ss_pred CCCChHHHHHH--HHHH--HcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEecCC----ccEEEEEEcC-CC-
Confidence 11222222111 1111 11101 11333344444444444432 23 46666542 2344443333 10
Q ss_pred CcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC
Q 038499 426 SSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY 505 (609)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~ 505 (609)
.++...+++.|.+ .||.+++|..|........ . ...++++|||++.
T Consensus 376 -------------~~~~~~l~~~l~~-~gi~v~~g~~~~~~~~~~~---~----------------~~~~~~iRis~~~- 421 (444)
T 3if2_A 376 -------------PISTLDLYERLKA-KGTLIVPSEYFFPGVDVSD---Y----------------QHAHECIRMSIAA- 421 (444)
T ss_dssp -------------SSCHHHHHHHHHH-TTEECEEGGGSCTTCCCTT---C----------------SGGGSEEEEESSS-
T ss_pred -------------CCCHHHHHHHHHH-CCeEEecchhhcCCCCCcc---c----------------ccCCCeEEEEEeC-
Confidence 1467888888854 6999999988862100000 0 0013799999986
Q ss_pred CCHHHHHHHHHHHHHHHHhc
Q 038499 506 MSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 506 ~t~eeid~ll~al~~v~~~~ 525 (609)
++++++.++++|+++++..
T Consensus 422 -~~e~i~~~l~~l~~~~~~~ 440 (444)
T 3if2_A 422 -DEQTLIDGIKVIGEVVREL 440 (444)
T ss_dssp -CHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988754
|
| >3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=6.8e-25 Score=234.93 Aligned_cols=342 Identities=16% Similarity=0.152 Sum_probs=213.5
Q ss_pred CCChHHHHHHHHHhhcCCc--cCCCCCCchhhHH-HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 87 GRSLRYIENYIINNVLPFY--GNTHTCDSYVGQH-TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~--~n~~~~~~~~~~~-~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
.+.++.|.+++.+.+...+ ++++.. ++.+.. .....+.+++++++++|.+++ .|+++ +|+. ++..++..+
T Consensus 40 n~~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~-~v~~~-sGs~-a~~~a~~~~--- 112 (420)
T 3gbx_A 40 NYTSPRVMQAQGSQLTNKYAEGYPGKR-YYGGCEYVDVVEQLAIDRAKELFGADYA-NVQPH-SGSQ-ANFAVYTAL--- 112 (420)
T ss_dssp CCCCHHHHHHHTSGGGGCCC---------------CHHHHHHHHHHHHHHHTCSEE-ECCCS-SHHH-HHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHHhcccccCCCCcc-ccCchHHHHHHHHHHHHHHHHHhCCCCc-eeEec-CcHH-HHHHHHHHh---
Confidence 3468889999988875444 444432 222222 234556677899999999765 55565 8855 677666655
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHHHH---HHc--CceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEE
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW---RQS--LAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGS 238 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~--G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~ 238 (609)
+++|| .|++..++|+++...+ ... +..++.++.+.++.+|+++|++++++ .++++++
T Consensus 113 ------------~~~gd--~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~v~ 174 (420)
T 3gbx_A 113 ------------LQPGD--TVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKE----HKPKMII 174 (420)
T ss_dssp ------------CCTTC--EEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHH----HCCSEEE
T ss_pred ------------cCCCC--EEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHh----cCCeEEE
Confidence 47888 6999999998854222 222 34556667777788999999999985 3689999
Q ss_pred EecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEec---hh
Q 038499 239 FSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTK---AL 315 (609)
Q Consensus 239 ~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~---~~ 315 (609)
+++++|+ ...|+++|.++|++||+++|+|++|+.+.............+|++++|+||+++||.| |+++.++ .+
T Consensus 175 ~~~~~~~--~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~g-g~~~~~~~~~~~ 251 (420)
T 3gbx_A 175 GGFSAYS--GVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRG-GLILAKGGDEEL 251 (420)
T ss_dssp ECCTTCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSC-EEEEESSCCHHH
T ss_pred EecCccC--CccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCc-eEEEEcCCcHHH
Confidence 9888775 4789999999999999999999998654332111111112479999999999988886 9999987 44
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL 395 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L 395 (609)
. +.+.+... ....++++......+++++......+.+.+.++..++++++.+.|
T Consensus 252 ~--~~~~~~~~------------------------~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L 305 (420)
T 3gbx_A 252 Y--KKLNSAVF------------------------PSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVF 305 (420)
T ss_dssp H--HHHHHHHC----------------------------CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred H--HHhhhhcC------------------------CCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 1 11111100 001234444443333323221112345677888888999999999
Q ss_pred CCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCC
Q 038499 396 LPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD 475 (609)
Q Consensus 396 ~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~ 475 (609)
.+ .+++++.+. ...+++++.+.+ .. .+...+.+.|. +.||.++++...... +...
T Consensus 306 ~~-~g~~~~~~~--~~~~~~~~~~~~-~~---------------~~~~~~~~~l~-~~gi~v~~~~~~~~~-~~~~---- 360 (420)
T 3gbx_A 306 LN-RGYKVVSGG--TENHLFLLDLVD-KN---------------LTGKEADAALG-RANITVNKNSVPNDP-KSPF---- 360 (420)
T ss_dssp HH-TTCEEGGGS--CSSSEEEEECGG-GT---------------CCHHHHHHHHH-HTTEECEEECCTTCS-SCTT----
T ss_pred Hh-cCCeeccCC--CCCeEEEEEcCC-CC---------------CCHHHHHHHHH-HCCcEeccccCCCCc-cccC----
Confidence 87 488887531 234455555443 11 35677888884 469999863211100 0000
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHhc
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYY----MSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~----~t~eeid~ll~al~~v~~~~ 525 (609)
.+..+||+++.. .+++++++++++|+++++..
T Consensus 361 ------------------~~~~iRi~~~~~~~~~~~~~~i~~~~~~l~~~l~~~ 396 (420)
T 3gbx_A 361 ------------------VTSGIRIGSPAVTRRGFKEAEVKELAGWMCDVLDNI 396 (420)
T ss_dssp ------------------TCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred ------------------CCcceEEecchhcccCCCHHHHHHHHHHHHHHHhCc
Confidence 135699998654 46899999999999988663
|
| >1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=3.2e-24 Score=227.96 Aligned_cols=304 Identities=16% Similarity=0.151 Sum_probs=208.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW- 198 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (609)
.....++++.+++++|.+ +.|+++ +| ++++..++..+ +++|| .|+++..+|++....+
T Consensus 51 ~~~~~~l~~~la~~~~~~--~~i~~~-sG-t~a~~~~~~~~---------------~~~g~--~vl~~~~~~~~~~~~~~ 109 (386)
T 1cs1_A 51 NPTRDVVQRALAELEGGA--GAVLTN-TG-MSAIHLVTTVF---------------LKPGD--LLVAPHDCYGGSYRLFD 109 (386)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEES-SH-HHHHHHHHHHH---------------CCTTC--EEEEETTCCHHHHHHHH
T ss_pred CccHHHHHHHHHHHhCCC--cEEEeC-CH-HHHHHHHHHHH---------------hCCCC--EEEEecCCcHhHHHHHH
Confidence 355788999999999987 367775 88 57888887765 36788 6999999999877665
Q ss_pred ---HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 199 ---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 199 ---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
+..|++++.++.+ |+++|+++++ ++++++++++++||||.+.|+++|.++|++||+++|+|++++.+
T Consensus 110 ~~~~~~g~~~~~~~~~-----d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~ 179 (386)
T 1cs1_A 110 SLAKRGCYRVLFVDQG-----DEQALRAALA-----EKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSP 179 (386)
T ss_dssp HHHTTTSCEEEEECTT-----CHHHHHHHHH-----TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCT
T ss_pred HHHHhcCCEEEEeCCC-----CHHHHHHhhc-----cCCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCccc
Confidence 4568999999864 8999999998 58999999999999999999999999999999999999999887
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCCc--EEEEEec-hhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGSP--GILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g~--G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
.....+. .+.|+++.|+||+++||++. |++++++ ++ ++.+.+... ..
T Consensus 180 ~~~~~~~----~~~di~~~s~sK~~~~~~~~~~G~~~~~~~~l--~~~l~~~~~------------------------~~ 229 (386)
T 1cs1_A 180 ALQNPLA----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV--VTELAWWAN------------------------NI 229 (386)
T ss_dssp TTCCGGG----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHH--HHHHHHHHH------------------------HH
T ss_pred ccCCccc----cCceEEEEcCcccccCCCCceeEEEEeCcHHH--HHHHHHHHH------------------------hc
Confidence 6543332 26899999999999988864 9999987 55 222211110 00
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEe-CCC-------------CCCCcceEEEE
Q 038499 353 SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKIL-GNT-------------STKRQAILSFN 418 (609)
Q Consensus 353 ~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~-~~~-------------~~~r~~~~~f~ 418 (609)
.++.+...... ++.. ....+...++..+..+++.+.|.+++.+.-. .+. ...+.++++|.
T Consensus 230 -~~~~~~~~~~~-~~~~----l~~~~~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 303 (386)
T 1cs1_A 230 -GVTGGAFDSYL-LLRG----LRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFE 303 (386)
T ss_dssp -TCBCCHHHHHH-HHHH----HTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEE
T ss_pred -CCCCCHHHHHH-HHhc----ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEE
Confidence 12222222111 1111 1123444556666777888888887766432 221 01236777777
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc---C------cccCChhhhhhcCCChhHHHHHHHHHhhC
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG---G------CACAGPYGHHLLDLDEAQSYQIRSAIQKG 489 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~---G------~~ca~p~~~~ll~i~~~~~~~~~~~~~~~ 489 (609)
+.. ....+.+.|. +.||.+++ | +.|+.. .|. ......-.
T Consensus 304 ~~~-------------------~~~~~~~~l~-~~gi~~~~~~~g~~~sl~~~~~~~-~~~--~~~~~~~~--------- 351 (386)
T 1cs1_A 304 LDG-------------------DEQTLRRFLG-GLSLFTLAESLGGVESLISHAATM-THA--GMAPEARA--------- 351 (386)
T ss_dssp ESS-------------------CHHHHHHHHH-TCSSSEEBSCCCSSSCEEEEGGGT-TTT--TSCHHHHH---------
T ss_pred ECC-------------------CHHHHHHHHH-hCCcceEcccCCCcceeeeccccc-ccc--cCCHHHHH---------
Confidence 654 2467777775 46999984 4 344311 000 00000000
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 490 ~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
..|+.++++|||++..+++++++.+.++|+.+.
T Consensus 352 ~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~ 384 (386)
T 1cs1_A 352 AAGISETLLRISTGIEDGEDLIADLENGFRAAN 384 (386)
T ss_dssp HHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred hcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 012336899999999999999999999998764
|
| >2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=229.59 Aligned_cols=353 Identities=12% Similarity=0.024 Sum_probs=227.9
Q ss_pred EecCCCCCC-ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 80 YADHTASGR-SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 80 yld~~a~g~-~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
|+|...+.+ .++.+.+++.+.+... .+..+ ....++++.+++++|.+ +++++++|+ +++..++.
T Consensus 32 ~id~~~~~~~~~~~v~~a~~~~~~~~-------~y~~~----~~~~~l~~~la~~~~~~---~~v~~~~Gt-~a~~~~l~ 96 (399)
T 2oga_A 32 FLDLKAAYEELRAETDAAIARVLDSG-------RYLLG----PELEGFEAEFAAYCETD---HAVGVNSGM-DALQLALR 96 (399)
T ss_dssp SCCHHHHHHHTHHHHHHHHHHHHHHT-------CCSSS----HHHHHHHHHHHHHTTSS---EEEEESCHH-HHHHHHHH
T ss_pred ccccCcCCCCCCHHHHHHHHHHHhcC-------CCCCc----hhHHHHHHHHHHHHCCC---eEEEecCHH-HHHHHHHH
Confidence 445443322 3467888887766421 11111 34678999999999985 467776774 67888877
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEE
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
.++ +++|| .|+++.++|+++...++..|++++.++.++ ++.+|+++|+++++ ++++++
T Consensus 97 ~~~--------------~~~gd--~vl~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v 155 (399)
T 2oga_A 97 GLG--------------IGPGD--EVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAIT-----PRTRAL 155 (399)
T ss_dssp HTT--------------CCTTC--EEEEESSSCTHHHHHHHHTTCEEEEECBCSSSSSBCHHHHHHHCC-----TTEEEE
T ss_pred HhC--------------CCCcC--EEEECCCccHHHHHHHHHCCCEEEEEecCCCCCCcCHHHHHHhcC-----CCCeEE
Confidence 763 36788 699999999999989999999999999886 57899999999998 578876
Q ss_pred EEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCC--CCCCCCCCcEEEEEe-ch
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTH--KFLGGPGSPGILLMT-KA 314 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~h--K~lggp~g~G~L~~~-~~ 314 (609)
+ ++||||.+.|+++|.++|+++|+++|+|++++.+... +..... ...|++++|+| |++|+++..|+++.+ ++
T Consensus 156 ~---~~n~tG~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~-~~~~~~-~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~ 230 (399)
T 2oga_A 156 L---PVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARY-RGRRIG-AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPE 230 (399)
T ss_dssp C---CBCGGGCCCCHHHHHHHHHHHTCEECEECTTCTTCEE-TTEETT-CTTCEEEEECCTTSSSCCSSCCEEEEESCHH
T ss_pred E---EeCCcCCccCHHHHHHHHHHcCCEEEEECcccccCcc-CCeecc-cccCEEEEeCCCCccCCcCCceEEEEeCCHH
Confidence 6 4689999999999999999999999999999877442 333221 12599999985 999865556888886 55
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
+ ++.+.+....+.... |... ..... .+.+.++...+ .+ .+ ...+.+.++.+++++++.+.
T Consensus 231 ~--~~~l~~~~~~g~~~~-----------~~~~-~~g~~-~~~~~~~~a~~-~~-~l---~~~~~~~~~~~~~~~~l~~~ 290 (399)
T 2oga_A 231 L--AERLRMLRNYGSRQK-----------YSHE-TKGTN-SRLDEMQAAVL-RI-RL---AHLDSWNGRRSALAAEYLSG 290 (399)
T ss_dssp H--HHHHHHHHBTTCSST-----------TCCC-SCCCB-CCCCHHHHHHH-HH-HH---HTHHHHHHHHHHHHHHHHHH
T ss_pred H--HHHHHHHHhcCcccc-----------cccc-ccccC-CCcCHHHHHHH-HH-HH---HHHHHHHHHHHHHHHHHHHH
Confidence 5 222222222221100 0000 00000 11222222111 11 11 12455677788889999999
Q ss_pred hCCCCceEEeCCCCCCCcce-EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh-hhc
Q 038499 395 LLPNQNIKILGNTSTKRQAI-LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH-HLL 472 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~~-~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~-~ll 472 (609)
|.++|++++....+ ...++ +.|.+.. .+...+.+.|.+ .||.++.++... .... .+.
T Consensus 291 L~~~~g~~~~~~~~-~~~~~~~~~~~~~------------------~~~~~l~~~L~~-~gI~v~~~~~~~-~~~~~~~~ 349 (399)
T 2oga_A 291 LAGLPGIGLPVTAP-DTDPVWHLFTVRT------------------ERRDELRSHLDA-RGIDTLTHYPVP-VHLSPAYA 349 (399)
T ss_dssp TTTCTTCBCCCCCT-TEECCCSSEEEEC------------------SSHHHHHHHHHH-TTBCCBCSCSSC-GGGSHHHH
T ss_pred hccCCCccccCCCC-CCcceeEEEEEEC------------------CCHHHHHHHHHH-CCCceecCCCCc-cccchhhc
Confidence 99988887754321 12222 1233332 246788888866 699999765211 0000 111
Q ss_pred CCC-----hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 473 DLD-----EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 473 ~i~-----~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++ .+.+..+ ..+++||+++.++|++|+++++++|+++++..
T Consensus 350 ~~~~~~~~~p~~~~~-----------~~~~lRi~~~~~~t~edi~~~~~~l~~~~~~l 396 (399)
T 2oga_A 350 GEAPPEGSLPRAESF-----------ARQVLSLPIGPHLERPQALRVIDAVREWAERV 396 (399)
T ss_dssp TTSCCTTSCHHHHHH-----------HHHEEEECCSTTCCHHHHHHHHHHHHHHHHSC
T ss_pred ccCCCCCCChhHHHH-----------HhCEEEccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 111 0111110 13789999999999999999999999988653
|
| >1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-23 Score=223.41 Aligned_cols=161 Identities=16% Similarity=0.118 Sum_probs=135.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH---
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL--- 196 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--- 196 (609)
....+++++.+++++|.+ +++++++|+ +++..++..+ +++|| .|+++.+.|+++..
T Consensus 61 ~~~~~~l~~~ia~~~g~~---~~i~~~~g~-~ai~~~~~~l---------------~~~gd--~Vl~~~~~y~~~~~~~~ 119 (404)
T 1e5e_A 61 NPTVSNLEGKIAFLEKTE---ACVATSSGM-GAIAATVLTI---------------LKAGD--HLISDECLYGCTHALFE 119 (404)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHHHH---------------CCTTC--EEEEESCCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC---cEEEeCChH-HHHHHHHHHH---------------hCCCC--EEEEeCCCchhHHHHHH
Confidence 455778999999999985 345554776 7888887765 37888 69999999999888
Q ss_pred -HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHH-hCCeEEEeccccC
Q 038499 197 -SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFDFAASG 274 (609)
Q Consensus 197 -~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~-~g~~vivD~A~~~ 274 (609)
.++..|++++.++.+ |+++|+++++ ++++++++++++||||.+.|+++|+++|++ ||+++|+|++++.
T Consensus 120 ~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~ 189 (404)
T 1e5e_A 120 HALTKFGIQVDFINTA-----IPGEVKKHMK-----PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCS 189 (404)
T ss_dssp THHHHTTCEEEEECTT-----STTHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTC
T ss_pred HHHHHcCCEEEEECCC-----CHHHHHHhcC-----CCCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCch
Confidence 456689999999876 7899999998 589999999999999999999999999999 9999999999987
Q ss_pred CcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechh
Q 038499 275 PYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKAL 315 (609)
Q Consensus 275 ~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~ 315 (609)
+.....+ .. +.|+++.|+||++++|++ .|+++++++.
T Consensus 190 ~~~~~~~-~~---~~di~~~S~sK~~~~~g~ri~G~~~~~~~~ 228 (404)
T 1e5e_A 190 PMITNPV-DF---GVDVVVHSATKYINGHTDVVAGLICGKADL 228 (404)
T ss_dssp TTTCCGG-GG---TCSEEEEETTTTTTCSSCCCCEEEEECHHH
T ss_pred hhhCCcc-cc---CCEEEEEcCccccCCCCCCeEEEEEECHHH
Confidence 7632222 12 689999999999998876 5999999887
|
| >1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=230.00 Aligned_cols=329 Identities=12% Similarity=0.073 Sum_probs=210.0
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
.++|++++.+..+++.+.+++.+.... .. .+. ......++++.+++++|.+ .++++++|+. ++..+
T Consensus 4 ~~i~~~~~~~~~p~~~~~~a~~~~~~~-----~~-~y~----~~~~~~~l~~~la~~~g~~---~~~~~~~gt~-a~~~~ 69 (347)
T 1jg8_A 4 MMIDLRSDTVTKPTEEMRKAMAQAEVG-----DD-VYG----EDPTINELERLAAETFGKE---AALFVPSGTM-GNQVS 69 (347)
T ss_dssp -CEECSCGGGCCCCHHHHHHHHTCCCC-----CG-GGT----CCHHHHHHHHHHHHHHTCS---EEEEESCHHH-HHHHH
T ss_pred eEEEeccccCCCCCHHHHHHHhcCCCC-----Cc-ccC----CChHHHHHHHHHHHHhCCc---eEEEecCcHH-HHHHH
Confidence 578999998888777888887654321 00 111 1223568899999999984 4677767775 45555
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH---HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhc-cCC
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL---SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYK-DAK 232 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~---~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~-~~~ 232 (609)
+.++ +++|| .|+++.++|.+... ..+..|++++.+ .++++.+|+++|++++++.. ..+
T Consensus 70 ~~~~---------------~~~gd--~Vl~~~~~~~~~~~~~~~~~~~g~~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~ 131 (347)
T 1jg8_A 70 IMAH---------------TQRGD--EVILEADSHIFWYEVGAMAVLSGVMPHPV-PGKNGAMDPDDVRKAIRPRNIHFP 131 (347)
T ss_dssp HHHH---------------CCTTC--EEEEETTCHHHHSSTTHHHHHTCCEEEEE-CEETTEECHHHHHHHSCCSCTTSC
T ss_pred HHHh---------------cCCCC--EEEEcCcchhhhccccchhhccCeEEEEe-cCCCCccCHHHHHHHhcccccccc
Confidence 5554 37888 69999999976542 456679999998 55577789999999997310 002
Q ss_pred CceEEEEecccCcc-ccccCH---HHHHHHHHHhCCeEEEeccccCC---cccccCCCCCCCCccEEEEcCCCCCCCCCC
Q 038499 233 RPILGSFSACSNVT-GIYSDT---RSIARLLHQYGGFACFDFAASGP---YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS 305 (609)
Q Consensus 233 ~~~lv~~s~~sn~T-G~~~dl---~~I~~la~~~g~~vivD~A~~~~---~~~id~~~~~~~~~D~v~~S~hK~lggp~g 305 (609)
+++++++++++||| |.+.|. ++|+++|++||+++++|+++..+ +...+...+ ..++|.+++|+||++++|.|
T Consensus 132 ~~~~v~~~~~~npt~G~~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~-~~~~d~~~~s~sK~l~~~~G 210 (347)
T 1jg8_A 132 RTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEY-AGYADSVMFCLSKGLCAPVG 210 (347)
T ss_dssp CEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHH-HHTCSEEEEESSSTTCCSSC
T ss_pred CceEEEEeccccccCCccCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHh-cccccEEEEecccccCCCce
Confidence 68999999999999 999775 67889999999999999986432 111222111 01578889999999997754
Q ss_pred cEEEEEechhhccCCCCCC--ccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHH
Q 038499 306 PGILLMTKALYQLGSFPPS--TCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQ 383 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~p~--~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~ 383 (609)
|+++.++++. +.+... ..+++ .....+.+.+ +. ..+... .+.+. +
T Consensus 211 -~~~~~~~~~~--~~~~~~~~~~~~~------------------------~~~~~~~~~~--~~-~~l~~~--~~~~~-~ 257 (347)
T 1jg8_A 211 -SVVVGDRDFI--ERARKARKMLGGG------------------------MRQAGVLAAA--GI-IALTKM--VDRLK-E 257 (347)
T ss_dssp -EEEEECHHHH--HHHHHHHHHHTCC------------------------CSSTHHHHHH--HH-HHHHHS--STTHH-H
T ss_pred -EEEEcCHHHH--HHHHHHHHHcCCc------------------------hhHHHHHHHH--HH-HHHHHH--HHHHH-H
Confidence 4666676662 222110 00000 0011122211 11 111121 12222 2
Q ss_pred HHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCccc
Q 038499 384 EETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
..+.++++.+.|+++ ++++... ....+++++.+.. .. .+..++.+.|.+ .||.++++.
T Consensus 258 ~~~~~~~l~~~L~~~-~~~~~~~--~~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~-~gi~v~~~~-- 315 (347)
T 1jg8_A 258 DHENARFLALKLKEI-GYSVNPE--DVKTNMVILRTDN-LK---------------VNAHGFIEALRN-SGVLANAVS-- 315 (347)
T ss_dssp HHHHHHHHHHHHHHH-TCBCCGG--GCCSSEEEEECTT-SS---------------SCHHHHHHHHHH-HTEECEEEE--
T ss_pred HHHHHHHHHHHHHhc-CceeccC--CCcceEEEEEccc-cc---------------CCHHHHHHHHHH-CCCEEecCC--
Confidence 234566777777665 5554221 1234555554432 11 357788888865 699998421
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
++++|++++.+++++|+++++++|+++++.
T Consensus 316 -------------------------------~~~iRl~~~~~~~~e~i~~~~~~l~~~l~~ 345 (347)
T 1jg8_A 316 -------------------------------DTEIRLVTHKDVSRNDIEEALNIFEKLFRK 345 (347)
T ss_dssp -------------------------------TTEEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred -------------------------------CCeEEEEeCCCCCHHHHHHHHHHHHHHHHh
Confidence 368999999999999999999999988753
|
| >3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B | Back alignment and structure |
|---|
Probab=99.93 E-value=1.4e-24 Score=232.46 Aligned_cols=159 Identities=17% Similarity=0.202 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH-
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR- 199 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~- 199 (609)
....++++.+++++|.+ +.|+++ +|+ +++..++. + +++|| .|+++...|+++...+.
T Consensus 67 p~~~~l~~~la~~~g~~--~~i~~~-sG~-~ai~~~~~-l---------------~~~gd--~Vl~~~~~y~~~~~~~~~ 124 (403)
T 3cog_A 67 PTRNCLEKAVAALDGAK--YCLAFA-SGL-AATVTITH-L---------------LKAGD--QIICMDDVYGGTNRYFRQ 124 (403)
T ss_dssp HHHHHHHHHHHHHHTCS--EEEEES-CHH-HHHHHHHT-T---------------SCTTC--EEEEESSCCHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCC--cEEEEC-CHH-HHHHHHHH-H---------------hCCCC--EEEEeCCCcchHHHHHHH
Confidence 44678999999999986 367776 887 67887766 4 37888 69999999998776653
Q ss_pred ---HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhC-CeEEEeccccCC
Q 038499 200 ---QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYG-GFACFDFAASGP 275 (609)
Q Consensus 200 ---~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g-~~vivD~A~~~~ 275 (609)
..|++++.++.+ |+++|+++++ ++++++++++++||||.+.|+++|+++|++|| +++|+|++++.+
T Consensus 125 ~~~~~G~~v~~v~~~-----d~~~l~~~i~-----~~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~ 194 (403)
T 3cog_A 125 VASEFGLKISFVDCS-----KIKLLEAAIT-----PETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSP 194 (403)
T ss_dssp TGGGGTCEEEEECTT-----SHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCT
T ss_pred HHHHcCCEEEEECCC-----CHHHHHHhcC-----cCCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCccc
Confidence 579999999875 8999999998 68999999999999999999999999999999 999999999887
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEe-chh
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMT-KAL 315 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~-~~~ 315 (609)
.....+. .+.|+++.|+||+++||++ .|+++++ +++
T Consensus 195 ~~~~~~~----~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l 233 (403)
T 3cog_A 195 YFQRPLA----LGADISMYSATKYMNGHSDVVMGLVSVNCESL 233 (403)
T ss_dssp TTCCTTT----TTCSEEEEETTTTTTCSSCCCCEEEEECCHHH
T ss_pred ccCCccc----cCCeEEEEcChhhccCCCCCeEEEEEECcHHH
Confidence 5332222 2689999999999999886 5999996 455
|
| >2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=232.71 Aligned_cols=337 Identities=11% Similarity=0.035 Sum_probs=217.6
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
..||...+-.-+.+....+.+..... . .+.+++......+++++.+++++|++ +.++| ++|+ ++++.+
T Consensus 46 ~pi~~s~t~~~~~~~~~~~~~~~~~~-----~---~~~y~r~~~p~~~~le~~lA~l~g~~--~~i~~-ssGt-~Ai~~a 113 (415)
T 2fq6_A 46 SVIQRASSLVFDSVEAKKHATRNRAN-----G---ELFYGRRGTLTHFSLQQAMCELEGGA--GCVLF-PCGA-AAVANS 113 (415)
T ss_dssp CCBCCCSCBCCSSHHHHHHHHHTTTT-----T---SCCCTTTCCHHHHHHHHHHHHHHTCS--EEEEE-SSHH-HHHHHH
T ss_pred CCeecccceeeCCHHHHHHhhccccC-----C---CccccCCCCchHHHHHHHHHHHhCCC--eEEEe-CCHH-HHHHHH
Confidence 45677666555555443333321100 0 12223333456788999999999985 24555 4675 578877
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH----HcCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
+..+ +++|| .|+++..+|++....|. ..|++++.++.+ |+++|+++|+ +
T Consensus 114 l~~l---------------~~~Gd--~Vi~~~~~y~~~~~~~~~~l~~~G~~v~~v~~~-----d~~~le~ai~-----~ 166 (415)
T 2fq6_A 114 ILAF---------------IEQGD--HVLMTNTAYEPSQDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQ-----P 166 (415)
T ss_dssp HHTT---------------CCTTC--EEEEETTSCHHHHHHHHHTGGGGTCEEEEECTT-----CGGGGGGGCC-----T
T ss_pred HHHH---------------hCCCC--EEEEeCCCchHHHHHHHHHHHHcCcEEEEECCC-----CHHHHHHhhc-----c
Confidence 7654 47898 79999999999887763 469999999764 7899999998 6
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHH--hCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEE
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGI 308 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~--~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~ 308 (609)
+|++|++++++||||.+.|+++|+++||+ ||+++++|++++.++....+ . .++|++++|+||++||+++ .|+
T Consensus 167 ~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~~p~-~---~g~Div~~S~sK~lg~~g~~~~G~ 242 (415)
T 2fq6_A 167 NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLFKAL-D---FGIDVSIQAATKYLVGHSDAMIGT 242 (415)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSSCGG-G---GTCSEEEEETTTTTTCSSSCCCEE
T ss_pred CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccCCcc-c---cCCeEEEEeCccccCCCCCceEEE
Confidence 89999999999999999999999999999 99999999999866432222 1 2789999999999998764 699
Q ss_pred EEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCCh-hHHHH-HHHHHHHHHHHhcCHHHHHHHHHH
Q 038499 309 LLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP-QVIQM-IRAALAFWVKEYIGHEVIKKQEET 386 (609)
Q Consensus 309 L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp-~i~~~-~~aal~~~~~~~~g~~~i~~~~~~ 386 (609)
++.++++ ++.+... ... ..++. ..... ...++. ......++..+
T Consensus 243 l~~~~~~--~~~l~~~------------------------~~~-~G~~~~~~~a~~~~~~l~-------~l~~r~~~~~~ 288 (415)
T 2fq6_A 243 AVCNARC--WEQLREN------------------------AYL-MGQMVDADTAYITSRGLR-------TLGVRLRQHHE 288 (415)
T ss_dssp EEECTTT--HHHHHHH------------------------HHH-TTCCCCHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred EEeCHHH--HHHHHHH------------------------HHh-cCCCCCHHHHHHHHhhhh-------HHHHHHHHHHH
Confidence 9988876 2222110 000 11111 11111 111111 12333445566
Q ss_pred HHHHHHHHhCCCCceE-EeCCCC-------------CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhh
Q 038499 387 YIERALERLLPNQNIK-ILGNTS-------------TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDL 452 (609)
Q Consensus 387 l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~ 452 (609)
.+..+.+.|.+.|.+. +.-+.- ....++++|.+.. ... ......+...| +.
T Consensus 289 n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g-~~~-------------~~~~~~~l~~l-~~ 353 (415)
T 2fq6_A 289 SSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKK-KLN-------------NEELANYLDNF-SL 353 (415)
T ss_dssp HHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESS-CCC-------------HHHHHHHHTTC-SS
T ss_pred HHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECC-CCC-------------HHHHHHHHHhC-Cc
Confidence 6777888887777664 322210 0245788888764 100 00123333433 45
Q ss_pred cCcEeccCcccCC-----hh--hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 453 FGIQARGGCACAG-----PY--GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 453 ~GI~v~~G~~ca~-----p~--~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
++|.++.|..|+- |. .|.+.. ...|+.++.||||++.++++++++.+.++|+.
T Consensus 354 ~~~a~s~G~~~s~~~~~~p~~~s~~~~~---------------~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~ 413 (415)
T 2fq6_A 354 FSMAYSWGGYESLILANQPEHIAAIRPQ---------------GEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR 413 (415)
T ss_dssp CEECSCCCSSSCEEEEECHHHHHTTCTT---------------CCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred CeEeccCCCCceeEEecCCCccccccch---------------hhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence 6788899988762 21 121110 01123468999999999999999999999874
|
| >3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.9e-25 Score=230.25 Aligned_cols=350 Identities=13% Similarity=0.038 Sum_probs=221.1
Q ss_pred EecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 80 YADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 80 yld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
|+|...+. +.++.+.+++.+.+...+ +.. .....++++.+++++|.+ .++++++|+. ++..++.
T Consensus 4 ~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~~----~~~~~~l~~~la~~~~~~---~~~~~~sGt~-al~~al~ 68 (367)
T 3nyt_A 4 FIDLKNQQARIKDKIDAGIQRVLRHGQ-------YIL----GPEVTELEDRLADFVGAK---YCISCANGTD-ALQIVQM 68 (367)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHCC-------CSS----CHHHHHHHHHHHHHHTCS---EEEEESCHHH-HHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHHhcCC-------ccC----ChHHHHHHHHHHHHhCCC---cEEEeCCHHH-HHHHHHH
Confidence 44444433 344567777766554210 111 134678999999999985 6788866665 6777777
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC-CCCCHHHHHHHHhhhccCCCceEE
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD-GLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
.++ +++|| .|+++.++|+++...++..|++++.++++++ +.+|+++|+++++ +++++|
T Consensus 69 ~~~--------------~~~gd--~Vi~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~d~~~l~~~i~-----~~~~~v 127 (367)
T 3nyt_A 69 ALG--------------VGPGD--EVITPGFTYVATAETVALLGAKPVYVDIDPRTYNLDPQLLEAAIT-----PRTKAI 127 (367)
T ss_dssp HTT--------------CCTTC--EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCGGGTGGGCC-----TTEEEE
T ss_pred HhC--------------CCCcC--EEEECCCccHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHhcC-----cCCcEE
Confidence 664 47888 6999999999999999999999999999875 8899999999997 678877
Q ss_pred EEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcC--CCCCCCCCCcEEEEEechh
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLST--HKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~--hK~lggp~g~G~L~~~~~~ 315 (609)
+ ++|+||...|+++|.++|++||+++|+|++++.+.. .+.......+ |++++|+ ||++|+++..|+++.+++.
T Consensus 128 ~---~~~~~G~~~~~~~i~~la~~~~~~li~D~a~~~g~~-~~~~~~~~~~-di~~~Sf~~~K~l~~~g~gg~~~~~~~~ 202 (367)
T 3nyt_A 128 I---PVSLYGQCADFDAINAIASKYGIPVIEDAAQSFGAS-YKGKRSCNLS-TVACTSFFPSAPLGCYGDGGAIFTNDDE 202 (367)
T ss_dssp C---CBCGGGCCCCHHHHHHHHHHTTCCBEEECTTTTTCE-ETTEETTSSS-SEEEEECCTTSSSCCSSCCEEEEESCHH
T ss_pred E---eeCCccChhhHHHHHHHHHHcCCEEEEECccccCCe-ECCeeccCCC-CEEEEECCCCCcCCCcCceeEEEeCCHH
Confidence 6 778999999999999999999999999999987654 2222221112 8999985 8999874546888885432
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL 395 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L 395 (609)
. .+.+.+....|.... |... ..........+... +++. .....+.+.++.+++++++.+.|
T Consensus 203 l-~~~~~~~~~~g~~~~-----------~~~~-~~g~~~~~~~~~aa--~~~~----~l~~~~~~~~~~~~~~~~~~~~L 263 (367)
T 3nyt_A 203 L-ATAIRQIARHGQDRR-----------YHHI-RVGVNSRLDTLQAA--ILLP----KLEIFEEEIALRQKVAAEYDLSL 263 (367)
T ss_dssp H-HHHHHHHTBTTEEET-----------TEEC-SCCCBCCCCHHHHH--HHHH----HHHTHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHhcCCCcC-----------ceee-ccCcCCCccHHHHH--HHHH----HHHHHHHHHHHHHHHHHHHHHHh
Confidence 1 122222222221100 0000 00011112222221 1111 11235667778888899999999
Q ss_pred CCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC----Chhhhhh
Q 038499 396 LPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA----GPYGHHL 471 (609)
Q Consensus 396 ~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca----~p~~~~l 471 (609)
+++ ++.+.............+.+.. -+.+.+.+.|.+ .||.++.+..+. .++....
T Consensus 264 ~~~-~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~L~~-~GI~~~~~~~~~~~~~~~~~~~~ 323 (367)
T 3nyt_A 264 KQV-GIGTPFIEVNNISVYAQYTVRM------------------DNRESVQASLKA-AGVPTAVHYPIPLNKQPAVADEK 323 (367)
T ss_dssp HHT-TCCCCCCCTTEECCCSSEEEEC------------------SSHHHHHHHHHH-HTCCCBCSCSSCGGGSGGGCCTT
T ss_pred ccC-CeeccCCCCCCceeeEEEEEEe------------------CCHHHHHHHHHH-CCCceeccCCCccccChhhhccC
Confidence 877 4544332111111122222222 146788888866 599999775311 1111101
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
...+.+..+ ....+|++++..+|++|+++++++|++.-
T Consensus 324 --~~~~~~~~~-----------~~~~l~lp~~~~~t~~~i~~v~~~~~~~~ 361 (367)
T 3nyt_A 324 --AKLPVGDKA-----------ATQVMSLPMHPYLDTASIKIICAALTNLE 361 (367)
T ss_dssp --CCCHHHHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHHC--
T ss_pred --CCChHHHHH-----------HhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence 111222222 13789999999999999999999997654
|
| >3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-23 Score=217.28 Aligned_cols=326 Identities=16% Similarity=0.179 Sum_probs=212.2
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
-|+|+.++ |..++.|.+++.+.+......... .......++++++++++| .+ +++|+++| +++
T Consensus 37 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~~~-------~~~~~~~~l~~~la~~~g--~~-~v~~~~~g-t~a 105 (392)
T 3ruy_A 37 RYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLTSRA-------FHSDQLGPWYEKVAKLTN--KE-MVLPMNTG-AEA 105 (392)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT-------SEETTHHHHHHHHHHHHT--CS-EEEEESSH-HHH
T ss_pred EEEEcCCChhhhccCCCCHHHHHHHHHHHHhccccccc-------cCCHHHHHHHHHHHHhcC--CC-EEEEeCcH-HHH
Confidence 48888753 235788999998887643111110 123457789999999998 33 89999555 446
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc-------------eEEEEecCCCCCCCHH
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA-------------EVVEIGLDDDGLLDIE 219 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------~vv~v~~~~~g~ld~e 219 (609)
+..++.++... . .......+|+. .|++....|++....+...+. .+..++.+ |++
T Consensus 106 ~~~al~~~~~~--~----~~~~~~~~~~~-~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~ 173 (392)
T 3ruy_A 106 VETAIKTARRW--A----YDVKKVEANRA-EIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLE 173 (392)
T ss_dssp HHHHHHHHHHH--H----HHTSCCCTTCC-EEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHH
T ss_pred HHHHHHHHHHh--h----hhccCCCCCCc-EEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHH
Confidence 66666544200 0 00000112222 688888888877665544322 25555543 899
Q ss_pred HHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc-CCccc--ccCCCCCCCCccEE
Q 038499 220 ALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVE--IDVRSGQTDGYDAI 292 (609)
Q Consensus 220 ~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~-~~~~~--id~~~~~~~~~D~v 292 (609)
+|+++++ ++++++++++++||||.+.| +++|.++|++||+++|+|++++ .+... +..... ....|++
T Consensus 174 ~l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~d~~ 247 (392)
T 3ruy_A 174 ALKAAIT-----PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVFACDWD-NVTPDMY 247 (392)
T ss_dssp HHHHHCC-----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTTTCEEEEECTTTTTTTTSSSSGGGGG-TCCCSEE
T ss_pred HHHHHhc-----cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCccccchhhhcc-CCCCCEE
Confidence 9999998 68999999999999999998 9999999999999999999985 22211 111111 1145888
Q ss_pred EEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHH
Q 038499 293 FLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWV 371 (609)
Q Consensus 293 ~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~ 371 (609)
++| |.++|. ..+|++++++++ ++.+.+...++.. .+.+.....+.+++...
T Consensus 248 ~~S--K~l~gG~~~~G~~~~~~~~--~~~~~~~~~~~~~-----------------------~~~~~~~~a~~~~l~~~- 299 (392)
T 3ruy_A 248 ILG--KALGGGVFPISCAAANRDI--LGVFEPGSHGSTF-----------------------GGNPLACAVSIAALEVL- 299 (392)
T ss_dssp EEC--GGGGTTTSCCEEEEECHHH--HTTCCTTSSCCSS-----------------------TTCHHHHHHHHHHHHHH-
T ss_pred EEc--hhhhCChhhhEEEEECHHH--HhhhccCCcCCCC-----------------------CCCHHHHHHHHHHHHHH-
Confidence 765 998863 348999999988 4455433211110 11122222223333322
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCC--CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHH
Q 038499 372 KEYIGHEVIKKQEETYIERALERLLPN--QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLL 449 (609)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~~~~~L~~~--p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 449 (609)
+ .+.+.++.+++++++.+.|+++ +.+....+ ...++.+.+.. +...+.+.|
T Consensus 300 -~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~----~g~~~~~~~~~-------------------~~~~l~~~l 352 (392)
T 3ruy_A 300 -E---EEKLTERSLQLGEKLVGQLKEIDNPMITEVRG----KGLFIGIELNE-------------------PARPYCEQL 352 (392)
T ss_dssp -H---HTTHHHHHHHHHHHHHHHHTTCCCTTEEEEEE----ETTEEEEEESS-------------------CSHHHHHHH
T ss_pred -H---hhhHHHHHHHHHHHHHHHHHHhcCCCceEEEe----eeeEEEEEEcc-------------------hHHHHHHHH
Confidence 2 2567788888999999999886 34444322 34556665432 356788888
Q ss_pred hhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 450 NDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 450 ~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.+ .||.+++|. ++++|+++++.+|++|+++++++|++++
T Consensus 353 ~~-~gi~v~~~~---------------------------------~~~iRi~~~~~~~~~~i~~~~~~l~~~l 391 (392)
T 3ruy_A 353 KA-AGLLCKETH---------------------------------ENVIRIAPPLVISEEDLEWAFQKIKAVL 391 (392)
T ss_dssp HT-TTEECCCBT---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HH-CCcEEecCC---------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 65 699998542 3799999999999999999999999875
|
| >2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=220.45 Aligned_cols=316 Identities=13% Similarity=0.071 Sum_probs=212.0
Q ss_pred eEEecCCCCCC------ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 78 LTYADHTASGR------SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 78 ~vyld~~a~g~------~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
..|+|.+++.+ .++.+.+++.+.+... ++.... + . .....++++.+++++|. ++ +|+++ +|+++
T Consensus 28 ~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~-~~~~~~-y-~----~~~~~~l~~~la~~~g~-~~-~v~~~-~g~t~ 97 (375)
T 2eh6_A 28 KEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKL-LHVSNL-Y-E----NPWQEELAHKLVKHFWT-EG-KVFFA-NSGTE 97 (375)
T ss_dssp CEEEESSHHHHTCTTCBSCHHHHHHHHHHHHHC-SCCCTT-B-C----CHHHHHHHHHHHHTSSS-CE-EEEEE-SSHHH
T ss_pred CEEEEcCCcccccccCCCCHHHHHHHHHHHHhc-cccCcc-c-C----CHHHHHHHHHHHhhcCC-CC-eEEEe-CchHH
Confidence 45888875432 6788999988877542 232221 2 1 12356889999999998 34 89998 66667
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhh---cCC-CceEEEECCCCccchHHHHHHcCce-------------EEEEecCCCC
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCL---RDE-ERWVVFVGPHEHHSNLLSWRQSLAE-------------VVEIGLDDDG 214 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l---~~g-d~~~Vlv~~~~h~s~~~~~~~~G~~-------------vv~v~~~~~g 214 (609)
++..++.++.. .. ++| | .|++...+|+.....+...+.. +..++.
T Consensus 98 a~~~~~~~~~~------------~~~~~~~g~~--~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 159 (375)
T 2eh6_A 98 SVEAAIKLARK------------YWRDKGKNKW--KFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL---- 159 (375)
T ss_dssp HHHHHHHHHHH------------HHHHTTCCCC--EEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT----
T ss_pred HHHHHHHHHHH------------HhccCCCCCC--EEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC----
Confidence 78777654210 01 467 6 6888888887776655543322 344432
Q ss_pred CCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc-CCccc--ccCCCCCCC
Q 038499 215 LLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVE--IDVRSGQTD 287 (609)
Q Consensus 215 ~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~-~~~~~--id~~~~~~~ 287 (609)
.|+++|+++++ ++++++++++++|+||.+.| +++|.++|++||+++|+|++++ .+... +++.... .
T Consensus 160 -~d~~~l~~~l~-----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~-~ 232 (375)
T 2eh6_A 160 -NDIDSVYKLLD-----EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFN-L 232 (375)
T ss_dssp -TCHHHHHTTCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGT-C
T ss_pred -chHHHHHHHhc-----CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcC-C
Confidence 48999999987 57999999999999999988 9999999999999999999988 44332 2233221 1
Q ss_pred CccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHH
Q 038499 288 GYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAA 366 (609)
Q Consensus 288 ~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aa 366 (609)
..|++++| |+++++.++|++++++++ ++.+.+...+ ...+++.+.+.+ .++
T Consensus 233 ~~d~~s~S--K~~~~g~~~G~~~~~~~~--~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~ 284 (375)
T 2eh6_A 233 KPDVIALA--KGLGGGVPIGAILAREEV--AQSFTPGSHG------------------------STFGGNPLACRAGTVV 284 (375)
T ss_dssp CCSEEEEC--GGGGTTSCCEEEEEEHHH--HTTCCTTSCC------------------------CSSTTCHHHHHHHHHH
T ss_pred CCCEEEEc--ccccCCCCeEEEEEcHHH--HhhhcCCCCC------------------------CCCCCCHHHHHHHHHH
Confidence 36888666 999877789999999987 4455432111 012333333322 222
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHH
Q 038499 367 LAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVA 446 (609)
Q Consensus 367 l~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 446 (609)
+... +.+.++.+++++++.+.|++++...+.+ ...++++.+.. +...++
T Consensus 285 l~~~-------~~~~~~~~~~~~~l~~~L~~~~~~~~~~-----~g~~~~~~~~~-------------------~~~~~~ 333 (375)
T 2eh6_A 285 VDEV-------EKLLPHVREVGNYFKEKLKELGKGKVKG-----RGLMLGLELER-------------------ECKDYV 333 (375)
T ss_dssp HHHH-------HHHHHHHHHHHHHHHHHHHHTTSSEEEE-----ETTEEEEECSS-------------------CCHHHH
T ss_pred HHHH-------HHHHHHHHHHHHHHHHHHHHHhcCCceE-----EEEEEEEEEcC-------------------cHHHHH
Confidence 2221 1567778888889999887765422211 23444444322 246788
Q ss_pred HHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 447 TLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 447 ~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+.|.+ .||.++++ .++++||++++.++++|+++++++|+++
T Consensus 334 ~~l~~-~gi~~~~~---------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~ 374 (375)
T 2eh6_A 334 LKALE-KGLLINCT---------------------------------AGKVLRFLPPLIIQKEHIDRAISVLREI 374 (375)
T ss_dssp HHHHH-TTEECEEE---------------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHH
T ss_pred HHHHH-CCCEEecC---------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 88866 69998843 1378999999999999999999999875
|
| >2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A | Back alignment and structure |
|---|
Probab=99.92 E-value=5.1e-24 Score=232.23 Aligned_cols=358 Identities=15% Similarity=0.134 Sum_probs=210.1
Q ss_pred CCChHHHHHHHHHhhcCCc--cCCCCCCchhhHHHH-HHHHHHHHHHHHHhCCCCCC--cEEEeCChHHHHHHHHHHHhc
Q 038499 87 GRSLRYIENYIINNVLPFY--GNTHTCDSYVGQHTT-NMVHEASNYIKKCLGGGQED--AMIFCGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~--~n~~~~~~~~~~~~~-~~~~e~r~~ia~~~g~~~~~--~vift~sGttaal~~l~~~l~ 161 (609)
.+.++.|.+++...+...| ++++.. ++.|..+. .+...+++++++++|++.++ ..+++++|+. ++..++.++
T Consensus 64 n~~~~~V~eA~~~~l~~~y~~G~~g~r-~~~G~~~~~~lE~~a~~~~a~l~g~~~~~~~~~v~~~sGt~-An~~al~al- 140 (490)
T 2a7v_A 64 NFCSRAALEALGSCLNNKYSEGYPGKR-YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSP-ANLAVYTAL- 140 (490)
T ss_dssp CCCCHHHHHHHTSGGGTCCCCC-------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHH-HHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHcCCCccCCCccc-ccCccHHHHHHHHHHHHHHHHHcCCCcccCceEEeCCchHH-HHHHHHHHH-
Confidence 4568899999988887766 566553 33444332 44557889999999998642 2355557766 566555555
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCCCccchHH--------HHHHcCce--EEEEecC-CCCCCCHHHHHHHHhhhcc
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL--------SWRQSLAE--VVEIGLD-DDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--------~~~~~G~~--vv~v~~~-~~g~ld~e~L~~al~~~~~ 230 (609)
++||| .|++++.+|.++.. .....|.. ++.++++ +++.+|+++|++++..
T Consensus 141 --------------~~pGD--~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD~d~le~~l~~--- 201 (490)
T 2a7v_A 141 --------------LQPHD--RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL--- 201 (490)
T ss_dssp --------------CCSCE--ECCC-------------------------------CCBCTTTCSBCHHHHHHHHHH---
T ss_pred --------------cCCCC--EecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcCHHHHHHHHhh---
Confidence 48999 69999988865432 22344544 4445555 4789999999999975
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~ 310 (609)
.++++++++.++|+ ...|+++|.++|++||+++++|+||+.+.+.....+....++|++++|+||+|+||.| |+++
T Consensus 202 -~~~klIi~~~s~~~--~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp~G-G~i~ 277 (490)
T 2a7v_A 202 -FRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLIF 277 (490)
T ss_dssp -HCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSC-EEEE
T ss_pred -cCCcEEEEcCCCCC--CcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccccc-hhee
Confidence 36888888776665 5679999999999999999999998754332221111113689999999999999987 9999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIER 390 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (609)
+++++...+ +. . +....+ +....+.........|+|+...+...+.++........+...++..+++++
T Consensus 278 ~~~~~~~~~---~~-~-~~~~~~------~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~ 346 (490)
T 2a7v_A 278 YRKGVKAVD---PK-T-GREIPY------TFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARA 346 (490)
T ss_dssp EECSEEEEE---TT-T-EEEEEC------CCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHH
T ss_pred eccchhccc---cc-c-cchhhH------HHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 998641100 00 0 000000 000000000001112445444333322222211112346777888899999
Q ss_pred HHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhh
Q 038499 391 ALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHH 470 (609)
Q Consensus 391 ~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ 470 (609)
+.+.|.+. |+++..+. ....++++.+.+ . .++..++.+.|. +.||.+..+..+..+ ..
T Consensus 347 L~~~L~~~-G~~v~~~~--t~t~lv~vdl~~-~---------------g~~~~~~~~~L~-~~GI~v~~~~~p~d~-~p- 404 (490)
T 2a7v_A 347 MADALLER-GYSLVSGG--TDNHLVLVDLRP-K---------------GLDGARAERVLE-LVSITANKNTCPGDR-SA- 404 (490)
T ss_dssp HHHHHHHT-TCEEGGGS--CSSSEEEEECTT-T---------------TCCHHHHHHHHH-HTTEECEEECCTTCC-CS-
T ss_pred HHHHHHHc-CcEEecCC--CCCeEEEEEeCC-C---------------CCCHHHHHHHHH-hCCeEEecCccCCCC-CC-
Confidence 99999886 89987531 123444444443 1 156788888885 569999865433211 00
Q ss_pred hcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhc
Q 038499 471 LLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP----YYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 471 ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~----~~~t~eeid~ll~al~~v~~~~ 525 (609)
..++.+||+.+ ...+++|+++++++|.+++...
T Consensus 405 ----------------------~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~~~ 441 (490)
T 2a7v_A 405 ----------------------ITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIG 441 (490)
T ss_dssp ----------------------SSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCCCceEecccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 02578999763 3468999999999999988754
|
| >3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-24 Score=228.37 Aligned_cols=307 Identities=12% Similarity=-0.011 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHH--HHHHHHhcccchhhHHHHHHhhhc--C----------CCceEEEECC
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAI--KRLQEVMGIAVPSILREKLIKCLR--D----------EERWVVFVGP 188 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal--~~l~~~l~~~~~~~~~~~~~~~l~--~----------gd~~~Vlv~~ 188 (609)
..++|+.|+++++++++ +|++| +|+++++ +.++.++. . + || .|++..
T Consensus 80 ~~~lr~~ia~~~~~~~~-~i~~t-~G~~~al~~~~~~~~l~---------------~~~~g~~~~~~~~~gd--~V~v~~ 140 (427)
T 3ppl_A 80 IVDIRQIWADLLGVPVE-QVLAG-DASSLNIMFDVISWSYI---------------FGNNDSVQPWSKEETV--KWICPV 140 (427)
T ss_dssp CHHHHHHHHHHHTSCGG-GEEEC-SSCHHHHHHHHHHHHHH---------------HCCTTCSSCGGGSSCC--EEEEEE
T ss_pred cHHHHHHHHHHhCCCcc-eEEEe-CCcHHHHHHHHHHHHHh---------------ccCCcccccccCCCCC--EEEEcC
Confidence 56799999999999887 89998 7888888 46666652 3 4 67 799999
Q ss_pred CCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEe-cccCccccccCHH---HHHHHH-HHhC
Q 038499 189 HEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFS-ACSNVTGIYSDTR---SIARLL-HQYG 263 (609)
Q Consensus 189 ~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s-~~sn~TG~~~dl~---~I~~la-~~~g 263 (609)
+.|+++...++..|++++.++++++| +|+++|+++++. ++++++++. +++||||.+.|.+ +|+++| ++||
T Consensus 141 p~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~----~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~ 215 (427)
T 3ppl_A 141 PGYDRHFSITERFGFEMISVPMNEDG-PDMDAVEELVKN----PQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPD 215 (427)
T ss_dssp SCCHHHHHHHHHTTCEEEEEEEETTE-ECHHHHHHHTTS----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTT
T ss_pred CCcHHHHHHHHHcCCEEEEeCCCCCC-CCHHHHHHHHhc----CCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCC
Confidence 99999999999999999999998776 999999999953 578887755 8899999999987 788888 9999
Q ss_pred CeEEEeccccCCcc------cccCCCC----CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEe
Q 038499 264 GFACFDFAASGPYV------EIDVRSG----QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNY 333 (609)
Q Consensus 264 ~~vivD~A~~~~~~------~id~~~~----~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~ 333 (609)
+++|+|++++.... ++++..+ ...+.++++.|+||+++++.++|++++++++ ++.+...
T Consensus 216 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l--~~~~~~~--------- 284 (427)
T 3ppl_A 216 FRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAEN--RKWYTGH--------- 284 (427)
T ss_dssp CEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHH--HHHHHHH---------
T ss_pred CEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHH--HHHHHHH---------
Confidence 99999999875211 1111110 0135678999999995544579999999887 2222110
Q ss_pred ecccccccccccccccccccCCChhHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHH----HHHHHhCCCCceEEeCCCC
Q 038499 334 VNGFNEKDTLYLEDIEERESGGTPQVIQMIR-AALAFWVKEYIGHEVIKKQEETYIE----RALERLLPNQNIKILGNTS 408 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~-aal~~~~~~~~g~~~i~~~~~~l~~----~~~~~L~~~p~i~v~~~~~ 408 (609)
......+++.+.+.+. +++.-...-....+.+.++.++.++ .+.+.+..++++.+..+
T Consensus 285 ---------------~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p-- 347 (427)
T 3ppl_A 285 ---------------AGIRGIGPNKVNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVP-- 347 (427)
T ss_dssp ---------------HHHHCSCCCHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCC--
T ss_pred ---------------hhcccCCCCHHHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCC--
Confidence 0111122333333221 1111000000112333333333444 44444444445666554
Q ss_pred CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhh
Q 038499 409 TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQK 488 (609)
Q Consensus 409 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~ 488 (609)
..+++.+...+ . .+...+.+.|.+ .||.+++|+.|.+. +..
T Consensus 348 --~~g~~~~~~~~-~----------------~~~~~~~~~l~~-~gv~v~~~g~~~~~-~~~------------------ 388 (427)
T 3ppl_A 348 --AGGYFISLDVV-P----------------GTASRVAELAKE-AGIALTGAGSSYPL-RQD------------------ 388 (427)
T ss_dssp --SBSSCEEEECS-T----------------TCHHHHHHHHHH-TTEECCCTTTTSGG-GCC------------------
T ss_pred --CccEEEEEECC-c----------------chHHHHHHHHHH-CCCEEecCcCcCCC-CCC------------------
Confidence 23444444443 1 146778888855 69999996555421 100
Q ss_pred CCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 489 GYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 489 ~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
..++++|||++.. ++++++.++++|+++++..
T Consensus 389 ----~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~~~ 420 (427)
T 3ppl_A 389 ----PENKNLRLAPSLP-PVEELEVAMDGVATCVLLA 420 (427)
T ss_dssp ----TTSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred ----CCCCeEEEECCCC-CHHHHHHHHHHHHHHHHHH
Confidence 0258999999755 9999999999999887653
|
| >3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-24 Score=229.68 Aligned_cols=344 Identities=10% Similarity=-0.004 Sum_probs=221.4
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----CC--CCCCcEEEeCChHHHHHHHHHHHhcc
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----GG--GQEDAMIFCGSGTTAAIKRLQEVMGI 162 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g~--~~~~~vift~sGttaal~~l~~~l~~ 162 (609)
.|+.+.+++.+.+... ...+ |....+ ..++++.+++++ |. +++ +|++| +|+++++..++.++
T Consensus 71 ~~~~v~~a~~~~~~~~-~~~~---Y~~~~g----~~~lr~~ia~~l~~~~g~~~~~~-~v~~t-~G~~~al~~~~~~l-- 138 (447)
T 3b46_A 71 PPQFAIKEAQKALDIP-MVNQ---YSPTRG----RPSLINSLIKLYSPIYNTELKAE-NVTVT-TGANEGILSCLMGL-- 138 (447)
T ss_dssp CCHHHHHHHHHHTTSG-GGGS---CCCTTC----CHHHHHHHHHHHTTTTTSCCCGG-GEEEE-SHHHHHHHHHHHHH--
T ss_pred CCHHHHHHHHHHHhCc-CCCC---CCCCCC----CHHHHHHHHHHHHHhcCCCCChh-hEEEe-CCHHHHHHHHHHHH--
Confidence 5678899988877531 1011 111111 234555555554 54 344 89998 78888999888876
Q ss_pred cchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC------------CCCCCHHHHHHHHhhhcc
Q 038499 163 AVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD------------DGLLDIEALRSKLELYKD 230 (609)
Q Consensus 163 ~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~------------~g~ld~e~L~~al~~~~~ 230 (609)
+++|| .|++..+.|+++...++..|++++.++.++ ++.+|+++|+++++
T Consensus 139 -------------~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---- 199 (447)
T 3b46_A 139 -------------LNAGD--EVIVFEPFFDQYIPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAIT---- 199 (447)
T ss_dssp -------------CCTTC--EEEEEESCCTTHHHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCC----
T ss_pred -------------cCCCC--EEEEeCCCchhHHHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhc----
Confidence 37888 688889999999988899999999999864 35789999999997
Q ss_pred CCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc---cccCCCC--CCCCccEEEEcCCCCCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV---EIDVRSG--QTDGYDAIFLSTHKFLGG 302 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~---~id~~~~--~~~~~D~v~~S~hK~lgg 302 (609)
++++++++++++||||.+.+ +++|+++|++||+++|+|++++.... ...+..+ ...+.|+++.|+||++|.
T Consensus 200 -~~~~~v~l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~ 278 (447)
T 3b46_A 200 -SKTKAVIINTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAA 278 (447)
T ss_dssp -TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTC
T ss_pred -cCCeEEEEeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCC
Confidence 58999999999999999964 78899999999999999999875321 1122111 012578999999999974
Q ss_pred CC-CcEEEEE-echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH-HHHHHHHHHHHhcCHHH
Q 038499 303 PG-SPGILLM-TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM-IRAALAFWVKEYIGHEV 379 (609)
Q Consensus 303 p~-g~G~L~~-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~-~~aal~~~~~~~~g~~~ 379 (609)
|+ .+|++++ ++++ ++.+... ......+.+...+. +.+++.... .....+.
T Consensus 279 ~G~riG~~~~~~~~l--~~~l~~~------------------------~~~~~~~~~~~~~~a~~~aL~~~~-~~~~~~~ 331 (447)
T 3b46_A 279 TGWRIGWVLSLNAEL--LSYAAKA------------------------HTRICFASPSPLQEACANSINDAL-KIGYFEK 331 (447)
T ss_dssp TTSCCEEEECSCHHH--HHHHHHH------------------------HHHHTSSCCHHHHHHHHHHHHHHH-HHTHHHH
T ss_pred cchhhEEEEeCCHHH--HHHHHHH------------------------HhhccCCCChHHHHHHHHHHhCCc-chHHHHH
Confidence 32 4899999 8777 2222110 00111222233332 222332210 1233667
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc
Q 038499 380 IKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG 459 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~ 459 (609)
+.++.+++++++.+.|+++ ++++..+ ..+++.+.-.+ ........+....-+...+...+++.|.++.||.+.+
T Consensus 332 ~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~g~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~p 405 (447)
T 3b46_A 332 MRQEYINKFKIFTSIFDEL-GLPYTAP----EGTYFVLVDFS-KVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIP 405 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TCCEECC----SBSSEEEEECT-TCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBC
T ss_pred HHHHHHHHHHHHHHHHHHC-CCeecCC----CeeEEEEEecc-cccCccccccccccccCCCHHHHHHHHHHhCCEEEEC
Confidence 7888888999999999876 6777654 23444443333 1000000000000000124557888786667999999
Q ss_pred CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 460 GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 460 G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
|..|..+..... .++++||+++ .++++++.++++|+++
T Consensus 406 g~~f~~~~~~~~----------------------~~~~iRls~~--~~~e~l~~~~~~l~~~ 443 (447)
T 3b46_A 406 PTEFYIKEHEKA----------------------AENLLRFAVC--KDDAYLENAVERLKLL 443 (447)
T ss_dssp GGGGSCGGGGGG----------------------GTTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred chHhCCCCccCC----------------------CCCEEEEEEe--CCHHHHHHHHHHHHHH
Confidence 876653211000 1489999998 3899999999988763
|
| >1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=3.5e-23 Score=220.32 Aligned_cols=318 Identities=14% Similarity=0.120 Sum_probs=210.5
Q ss_pred eEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 78 LTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 78 ~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
..|+|.+++ |+.++.+.+++.+.+... .+.... + ......++++.+++++|.+++ +|+++ +|+++
T Consensus 45 ~~~ld~~~~~~~~~~g~~~~~v~~a~~~~~~~~-~~~~~~-~-----~~~~~~~l~~~la~~~~~~~~-~v~~~-~gg~~ 115 (395)
T 1vef_A 45 NEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL-MAMPQT-L-----PTPMRGEFYRTLTAILPPELN-RVFPV-NSGTE 115 (395)
T ss_dssp CEEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC-CCCCTT-S-----CCHHHHHHHHHHHHTSCTTEE-EEEEE-SSHHH
T ss_pred CEEEEccCccccccCCCCCHHHHHHHHHHHHhC-CCCccc-c-----CCHHHHHHHHHHHHhcCCCcC-EEEEc-CcHHH
Confidence 357887644 567888999998877542 221111 1 235678899999999987665 89998 55566
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHcCce------------EEEEecCCCCCCCH
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQSLAE------------VVEIGLDDDGLLDI 218 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G~~------------vv~v~~~~~g~ld~ 218 (609)
++..++.++. .+.+++ .|++.+..|++. ...+...|++ +..++. .|+
T Consensus 116 a~~~al~~~~-------------~~~~~~--~vi~~~~~y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~ 175 (395)
T 1vef_A 116 ANEAALKFAR-------------AHTGRK--KFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPY-----NDV 175 (395)
T ss_dssp HHHHHHHHHH-------------HHHSCC--EEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECT-----TCH
T ss_pred HHHHHHHHHH-------------HHhCCC--eEEEEcCCcCCCchhhhhhcCCcccccccCCCCCCeeEeCC-----CcH
Confidence 7777766541 023566 455556666554 4455555665 333432 489
Q ss_pred HHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Cccc----ccCCCCCCCCc
Q 038499 219 EALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVE----IDVRSGQTDGY 289 (609)
Q Consensus 219 e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~----id~~~~~~~~~ 289 (609)
++|+++++ ++++++++++++|+||.+.| +++|.++|++||+++|+|++++. +... ++... ...
T Consensus 176 ~~l~~~i~-----~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~g~~~~~~~~~---~~~ 247 (395)
T 1vef_A 176 EALKRAVD-----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFG---IVP 247 (395)
T ss_dssp HHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHT---CCC
T ss_pred HHHHHHhc-----cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCccCCchhHhhhcC---CCC
Confidence 99999998 57899999988999999988 99999999999999999999882 2111 11111 145
Q ss_pred cEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHH--HHHHHH
Q 038499 290 DAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ--MIRAAL 367 (609)
Q Consensus 290 D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~--~~~aal 367 (609)
|++ |+||+++++.++|++++++++ ++.+.+...+ . ..+++... .+.+++
T Consensus 248 d~~--s~sK~~~~g~~~G~~~~~~~~--~~~l~~~~~~------------------------~-~~~~~~~~~~a~~~al 298 (395)
T 1vef_A 248 DIL--TLAKALGGGVPLGVAVMREEV--ARSMPKGGHG------------------------T-TFGGNPLAMAAGVAAI 298 (395)
T ss_dssp SEE--EECGGGGTTSSCEEEEEEHHH--HHTSCTTSSC------------------------C-SSTTCHHHHHHHHHHH
T ss_pred CEE--EEcccccCCCceEEEEehHHH--HhhhccCCcC------------------------C-CcCCCHHHHHHHHHHH
Confidence 766 569999987779999999987 4444321000 0 01122222 223344
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc--eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHH
Q 038499 368 AFWVKEYIGHEVIKKQEETYIERALERLLPNQN--IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFV 445 (609)
Q Consensus 368 ~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~--i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v 445 (609)
... +. +.+.++.+++++++.+.|++++. +.... ....++++.+.. ....+
T Consensus 299 ~~~--~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~----~~g~~~~~~~~~-------------------~~~~l 350 (395)
T 1vef_A 299 RYL--ER---TRLWERAAELGPWFMEKLRAIPSPKIREVR----GMGLMVGLELKE-------------------KAAPY 350 (395)
T ss_dssp HHH--HH---HTTHHHHHHHHHHHHHHHHTSCCTTEEEEE----EETTEEEEEESS-------------------CSHHH
T ss_pred HHH--Hh---CCHHHHHHHHHHHHHHHHHHhhcCceEEEE----EEEEEEEEEEcC-------------------hHHHH
Confidence 433 11 34567788888899998877632 21111 123455554432 24678
Q ss_pred HHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 446 ATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 446 ~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.+.|.++.||.++++ .++++||+++++++++|+++++++|++++
T Consensus 351 ~~~l~~~~gi~v~~~---------------------------------~~~~iRi~~~~~~~~~~i~~~~~~l~~~l 394 (395)
T 1vef_A 351 IARLEKEHRVLALQA---------------------------------GPTVIRFLPPLVIEKEDLERVVEAVRAVL 394 (395)
T ss_dssp HHHHHHHHCEECEES---------------------------------STTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCeEEecC---------------------------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 888873469999853 13799999999999999999999998875
|
| >3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.7e-23 Score=227.57 Aligned_cols=350 Identities=11% Similarity=-0.004 Sum_probs=219.7
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
.|..+.+++.+.+....+ .....|....+...+++.+.+++.+..| ++++ +|++| +|+++++..++.++.
T Consensus 107 ~p~~~~~~a~~~l~~~~~-~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G~~~al~~~~~~l~----- 178 (500)
T 3tcm_A 107 FSADSISRAKQILAMIPG-RATGAYSHSQGIHGLRDAIASGIASRDGFPANAD-DIFLT-DGASPGVHLMMQLLI----- 178 (500)
T ss_dssp SCHHHHHHHHHHHTTSTT-SCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGG-GEEEE-SSSHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHcCCC-CcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcc-cEEEc-CCHHHHHHHHHHHHc-----
Confidence 344566666555543211 0111232333344555555555555555 4455 89998 788888998888762
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC--CCCCHHHHHHHHhhhcc-CCCceEEEEeccc
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD--GLLDIEALRSKLELYKD-AKRPILGSFSACS 243 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~--g~ld~e~L~~al~~~~~-~~~~~lv~~s~~s 243 (609)
.++|| .|+++.+.|+++...++..|++++.++++++ +.+|+++|+++|++... ..+++++++++++
T Consensus 179 ---------~~~gd--~Vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~ 247 (500)
T 3tcm_A 179 ---------RNEKD--GILVPIPQYPLYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPG 247 (500)
T ss_dssp ---------CSTTE--EEEEEESCCTHHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSC
T ss_pred ---------CCCCC--EEEEeCCCcHhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCC
Confidence 15787 7999999999999999999999999998764 48999999999984211 1268899999999
Q ss_pred CccccccC---HHHHHHHHHHhCCeEEEeccccCCcc-----cccCC----CCC--CCCc-cEEEEcCCCCCCCCC--Cc
Q 038499 244 NVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-----EIDVR----SGQ--TDGY-DAIFLSTHKFLGGPG--SP 306 (609)
Q Consensus 244 n~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~-----~id~~----~~~--~~~~-D~v~~S~hK~lggp~--g~ 306 (609)
||||.+.+ +++|+++|++||+++++|++++.... ..++. .+. .+.. .+++.|+||.+.|+. .+
T Consensus 248 NPtG~~~s~~~l~~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~ 327 (500)
T 3tcm_A 248 NPTGQVLAEENQYDIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRG 327 (500)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCC
T ss_pred CCCcccCCHHHHHHHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccce
Confidence 99999987 45677779999999999999775321 11111 000 1122 356679999983332 37
Q ss_pred EEEEE---echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHH------------HH
Q 038499 307 GILLM---TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAF------------WV 371 (609)
Q Consensus 307 G~L~~---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~------------~~ 371 (609)
|++++ ++++ ++.+... ... ..+++..+...++..+ +.
T Consensus 328 G~~~~~~~~~~~--~~~l~~~-------------------------~~~-~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~ 379 (500)
T 3tcm_A 328 GYFEITGFSAPV--REQIYKI-------------------------ASV-NLCSNITGQILASLVMNPPKASDESYASYK 379 (500)
T ss_dssp EEEEEESCCTTH--HHHHHHH-------------------------HHT-TCCCCHHHHHHHHHHHSCCCSSSTHHHHHH
T ss_pred EEEEEeCCCHHH--HHHHHHH-------------------------Hhc-ccCCCHHHHHHHHHHhcCccccchhHHHHH
Confidence 99998 6666 2222100 011 1223333322221111 11
Q ss_pred HHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCC-hHHHHHHHh
Q 038499 372 KEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLH-GPFVATLLN 450 (609)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~-~~~v~~~L~ 450 (609)
+ ..+.+.++.+++++++.+.|+++|++++..+ ..+++.|.-..-+... .+........ ...++..++
T Consensus 380 ~---~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~~----~g~~~~~~~~~lp~~~-----~~~~~~~g~~~~~~~~~~ll 447 (500)
T 3tcm_A 380 A---EKDGILASLARRAKALEHAFNKLEGITCNEA----EGAMYVFPQICLPQKA-----IEAAKAANKAPDAFYALRLL 447 (500)
T ss_dssp H---HHHHHHHHHHHHHHHHHHHHHTSTTEECCCC----CBTTEECCEECCCHHH-----HHHHHHHTSCHHHHHHHHHH
T ss_pred H---HHHHHHHHHHHHHHHHHHHHhcCCCcEEecC----CeEEEEeeeecCchhh-----HHHHHhcCCCcHHHHHHHHH
Confidence 1 2456677888889999999999999988755 3456655322100000 0000000011 223334444
Q ss_pred hhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 451 DLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 451 ~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
++.||.+++|..|..+. ..+++|+++. .++++++.++++|+++.+..
T Consensus 448 ~~~gI~v~pg~~f~~~~--------------------------g~~~iRis~~--~~~e~i~~~i~~l~~~~~~~ 494 (500)
T 3tcm_A 448 ESTGIVVVPGSGFGQVP--------------------------GTWHFRCTIL--PQEDKIPAVISRFTVFHEAF 494 (500)
T ss_dssp HHHCEECEESTTTCCCT--------------------------TCCBEEEESC--SCTTTHHHHHHHHHHHHHHH
T ss_pred HHCCEEEEeCcccCCCC--------------------------CCCEEEEEEC--CCHHHHHHHHHHHHHHHHHH
Confidence 56799999998876321 1478999998 79999999999999987654
|
| >1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-24 Score=228.82 Aligned_cols=307 Identities=15% Similarity=0.106 Sum_probs=202.1
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH
Q 038499 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW 198 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (609)
......++++.+++++|.+ +.++++ +| +++++.++. + +++|| .|+++..+|++....+
T Consensus 53 ~~~~~~~lr~~la~~~g~~--~~i~~~-sG-t~a~~~al~-~---------------~~~gd--~Vi~~~~~y~~~~~~~ 110 (393)
T 1n8p_A 53 QNPNRENLERAVAALENAQ--YGLAFS-SG-SATTATILQ-S---------------LPQGS--HAVSIGDVYGGTHRYF 110 (393)
T ss_dssp CCHHHHHHHHHHHHHTTCS--EEEEES-CH-HHHHHHHHH-T---------------SCSSC--EEEEESSCCHHHHHHH
T ss_pred CChhHHHHHHHHHHHhCCC--cEEEEC-Ch-HHHHHHHHH-H---------------cCCCC--EEEEeCCCchHHHHHH
Confidence 3455788999999999986 255555 78 578888877 5 37888 6888889998776654
Q ss_pred ----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHh----CCeEEEec
Q 038499 199 ----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY----GGFACFDF 270 (609)
Q Consensus 199 ----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~----g~~vivD~ 270 (609)
+..|++++.++.+ | ++|+++++ +++++|++++++||||.+.|+++|+++|++| |+++|+|+
T Consensus 111 ~~~~~~~G~~v~~v~~~-----d-~~l~~~i~-----~~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~ 179 (393)
T 1n8p_A 111 TKVANAHGVETSFTNDL-----L-NDLPQLIK-----ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDN 179 (393)
T ss_dssp HHTSTTTCSCCEEESSH-----H-HHHHHHSC-----SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEEC
T ss_pred HHHHHHcCcEEEEeCCC-----h-HHHHHhcc-----cCceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeC
Confidence 3469999999875 7 89999987 5899999999999999999999999999999 99999999
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCCCCCC-Cc-EEEEEe-chhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG-SP-GILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~-G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
+++.+... ++..+ ++|++++|+||++|+++ .+ |+++++ +++ ++.+.+.
T Consensus 180 a~~~~~~~-~~~~~---~~di~~~S~sK~~g~~G~rigG~~~~~~~~~--~~~l~~~----------------------- 230 (393)
T 1n8p_A 180 TFLSPYIS-NPLNF---GADIVVHSATKYINGHSDVVLGVLATNNKPL--YERLQFL----------------------- 230 (393)
T ss_dssp TTTHHHHC-CGGGG---TCSEEEEETTTTTTCSSCCCCEEEEESCHHH--HHHHHHH-----------------------
T ss_pred CccccccC-CHHHc---CCeEEEEECcccccCCCCceeEEEEeCCHHH--HHHHHHH-----------------------
Confidence 99876542 33332 68999999999998554 25 999886 555 2222110
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc-eE-EeCCC--CC-----------C-C
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN-IK-ILGNT--ST-----------K-R 411 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~-i~-v~~~~--~~-----------~-r 411 (609)
.....++.+..... +++.. ........++..+.++++.+.|.+.+. +. +.-+. +. . .
T Consensus 231 --~~~~g~~~~~~~~~-~~~~~----l~~~~~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~ 303 (393)
T 1n8p_A 231 --QNAIGAIPSPFDAW-LTHRG----LKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDAL 303 (393)
T ss_dssp --HHHHCCCCCHHHHH-HHHHH----HTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGC
T ss_pred --HHhcCCCCCHHHHH-HHHhc----cchHHHHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCC
Confidence 00011222211111 11111 112344445556667778888887765 54 32221 00 1 2
Q ss_pred -cceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC---h--hhhhhcCCChhHHHHHHHH
Q 038499 412 -QAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG---P--YGHHLLDLDEAQSYQIRSA 485 (609)
Q Consensus 412 -~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~---p--~~~~ll~i~~~~~~~~~~~ 485 (609)
.++++|.+.+ .. .....+...| +.++|.++.|.+|+. | ..|.. +..+.
T Consensus 304 ~~~i~~~~l~~-~~---------------~~~~~~l~~l-~~~~~~~s~G~~~s~~~~p~~~~h~~--~~~~~------- 357 (393)
T 1n8p_A 304 GGGMISFRIKG-GA---------------EAASKFASST-RLFTLAESLGGIESLLEVPAVMTHGG--IPKEA------- 357 (393)
T ss_dssp CCSEEEEEESS-CH---------------HHHHHHHHHC-SSSEECSCCCCSSCEEECTTTTTSCS--SCTTT-------
T ss_pred CccEEEEEeCC-cH---------------HHHHHHHhhC-CcceECCCCCCCcceeeccccccccc--cCHHH-------
Confidence 5677887754 10 1234455554 345778877866652 1 22210 00000
Q ss_pred HhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 486 IQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 486 ~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.-..|+.++.||+|++.++++++++.+.++|+.+.
T Consensus 358 --~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~ 392 (393)
T 1n8p_A 358 --REASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT 392 (393)
T ss_dssp --TTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred --HHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence 00122346899999999999999999999998753
|
| >3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-23 Score=221.72 Aligned_cols=307 Identities=16% Similarity=0.110 Sum_probs=209.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 116 GQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 116 ~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
++.......++++.+++++|.+ +++++++|+ +++..++..+ +++|| .|+++..+|+++.
T Consensus 61 ~r~~~~~~~~l~~~la~~~g~~---~~~~~~sGt-~A~~~al~~~---------------~~~gd--~Vi~~~~~y~~~~ 119 (392)
T 3qhx_A 61 ARTGNPTRTALEAALAAVEDAA---FGRAFSSGM-AAADCALRAM---------------LRPGD--HVVIPDDAYGGTF 119 (392)
T ss_dssp TTTCCHHHHHHHHHHHHHTTCS---EEEEESSHH-HHHHHHHHHH---------------CCTTC--EEEEETTCCHHHH
T ss_pred cCCCChHHHHHHHHHHHHhCCC---cEEEECCHH-HHHHHHHHHH---------------hCCCC--EEEEeCCCcchHH
Confidence 3334556789999999999985 567776775 5777777655 37888 6999999999887
Q ss_pred HHH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecc
Q 038499 196 LSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 196 ~~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A 271 (609)
..+ +..|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|++||+++|+|++
T Consensus 120 ~~~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~ 189 (392)
T 3qhx_A 120 RLIDKVFTGWNVEYTPVALA-----DLDAVRAAIR-----PTTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNT 189 (392)
T ss_dssp HHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECT
T ss_pred HHHHHHHHhcCcEEEEeCCC-----CHHHHHHhhC-----CCCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECC
Confidence 776 5579999999875 8999999998 6899999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEec-hhhccCCCCCCccCCCceEeecccccccccccccc
Q 038499 272 ASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI 348 (609)
Q Consensus 272 ~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (609)
++.+...... . .++|+++.|+||++||+++ .|+++.++ ++. ..+...
T Consensus 190 ~~~~~~~~~~-~---~~~di~~~S~sK~lg~~g~~~~G~v~~~~~~~~--~~l~~~------------------------ 239 (392)
T 3qhx_A 190 FASPALQQPL-S---LGADVVLHSTTKYIGGHSDVVGGALVTNDEELD--QSFAFL------------------------ 239 (392)
T ss_dssp TTCTTTCCGG-G---GTCSEEEEETTTTTTCSSCCCCEEEEESCHHHH--HHHHHH------------------------
T ss_pred CcccccCChH-H---hCCcEEEEcCccccCCCCCceEEEEEECcHHHH--HHHHHH------------------------
Confidence 8866432211 2 2789999999999997653 79999884 442 111100
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC--C-----------CCcce
Q 038499 349 EERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS--T-----------KRQAI 414 (609)
Q Consensus 349 ~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~--~-----------~r~~~ 414 (609)
......+++.... .+++.. ....+...++..++++++.+.|+++|.+. +..+.- . ...++
T Consensus 240 -~~~~g~~~~~~~~-~~~~~~----l~~l~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~g~g~~ 313 (392)
T 3qhx_A 240 -QNGAGAVPGPFDA-YLTMRG----LKTLVLRMQRHSENAAAVAEFLAEHPAISTVLYPGLPSHPGHAVAARQMRGFGGM 313 (392)
T ss_dssp -HHHHCCCCCHHHH-HHHHHH----HTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSE
T ss_pred -HHhcCCCCCHHHH-HHHHhh----hhHHHHHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCCCHHHHHHhCCCCceE
Confidence 0000111111111 111111 11234445666777888888898888874 333311 0 12457
Q ss_pred EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC---hhhhhhcCCChhHHHHHHHHHhhCCC
Q 038499 415 LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG---PYGHHLLDLDEAQSYQIRSAIQKGYV 491 (609)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~---p~~~~ll~i~~~~~~~~~~~~~~~~~ 491 (609)
++|.+.. +. .....+...| +.++|.+..|..|+- |.......+..+ -.
T Consensus 314 ~~~~l~~-~~---------------~~~~~~~~~l-~~~~~~~s~G~~~sl~~~~~~~~~~~~~~~------------~~ 364 (392)
T 3qhx_A 314 VSVRMRA-GR---------------TAAEQLCAKT-NIFILAESLGSVESLIEHPSAMTHASTAGS------------QL 364 (392)
T ss_dssp EEEEETT-CH---------------HHHHHHHHHC-SSSEECSCCCCSSCEEECGGGTSCGGGBTT------------BC
T ss_pred EEEEeCC-cH---------------HHHHHHHHhC-CCceECCCCCCCCceeeCcccccccccCHH------------Hc
Confidence 7777764 21 1345666666 557899998887652 211100000000 12
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 492 GVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 492 ~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
++.++.||||++..+++++++.+.++|
T Consensus 365 g~~~~~iRlSvg~e~~~~~i~~l~~al 391 (392)
T 3qhx_A 365 EVPDDLVRLSVGIEDVADLLDDLKQAL 391 (392)
T ss_dssp CCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence 345799999999999999998888876
|
| >3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=8.6e-24 Score=227.93 Aligned_cols=343 Identities=12% Similarity=0.042 Sum_probs=220.6
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----CCCCCCcEEEeCChHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----GGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g~~~~~~vift~sGtta 151 (609)
++++|..+... +.++.|.+++.+.+... ++.+... ++.......++++.+++++ +.+++ +|+|| +|+++
T Consensus 57 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~~~---~y~~~~g~~~l~~~ia~~~~~~~~~~~~-~i~~t-~G~~~ 130 (432)
T 3ei9_A 57 QVISLGIGDTTEPIPEVITSAMAKKAHEL-STIEGYS---GYGAEQGAKPLRAAIAKTFYGGLGIGDD-DVFVS-DGAKC 130 (432)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHHHHHT-TSTTTCC---CCCCTTCCHHHHHHHHHHHHTTTTCCGG-GEEEE-SCHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhcc-cccCCcc---CCCCCCCCHHHHHHHHHHHHccCCCCcc-eEEEC-CChHH
Confidence 57777665433 67788999998877643 2222111 1111122456677777775 77765 89998 88888
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc------------eEEEEecCCCC--CCC
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA------------EVVEIGLDDDG--LLD 217 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~------------~vv~v~~~~~g--~ld 217 (609)
++..+.. + +++|| .|+++.+.|+++...++..|+ +++.++++.++ ..|
T Consensus 131 al~~l~~-l---------------~~~gd--~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 192 (432)
T 3ei9_A 131 DISRLQV-M---------------FGSNV--TIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPD 192 (432)
T ss_dssp HHHHHHH-H---------------HCTTC--CEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCC
T ss_pred HHHHHHH-H---------------cCCCC--EEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCC
Confidence 8887533 3 36888 599999999999988888774 68888887533 334
Q ss_pred HHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc---ccccCCCCC-CCCcc
Q 038499 218 IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY---VEIDVRSGQ-TDGYD 290 (609)
Q Consensus 218 ~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~---~~id~~~~~-~~~~D 290 (609)
+++ . ++++++++++++||||.+.+ +++|+++|++||+++|+|++++... .+..+.... ..+.+
T Consensus 193 l~~-----~-----~~~~~v~l~~p~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~ 262 (432)
T 3ei9_A 193 LST-----V-----GRTDIIFFCSPNNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVA 262 (432)
T ss_dssp GGG-----C-----CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTE
T ss_pred hhh-----C-----CCCCEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeE
Confidence 221 1 57899999999999999987 5567777999999999999987431 122222211 12456
Q ss_pred EEEEcCCCCCCCC-CCcEEEEEechhhccCC-CCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHH
Q 038499 291 AIFLSTHKFLGGP-GSPGILLMTKALYQLGS-FPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALA 368 (609)
Q Consensus 291 ~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~-~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~ 368 (609)
+++.|++|++|.+ .++|++++++++ +.. ..+. ...+.. .......+++......+...
T Consensus 263 i~~~S~SK~~g~~G~r~G~~~~~~~~--~~~~~~~~-----------------~~~~~~-~~~~~~~~~~~~~~~a~~~~ 322 (432)
T 3ei9_A 263 METASFSNYAGFTGVRLGWTVIPKKL--LYSDGFPV-----------------AKDFNR-IICTCFNGASNISQAGALAC 322 (432)
T ss_dssp EEEEESHHHHCTTTTCCEEEECCTTC--BCTTSCBH-----------------HHHHHH-HHHHSCCCSCHHHHHHHHHH
T ss_pred EEEecchhccCCcccceEEEEEChHH--hhcchHHH-----------------HHHHHH-HhccccCCCCHHHHHHHHHH
Confidence 8899999999733 358999998876 211 0000 000000 00111222333322211111
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHH
Q 038499 369 FWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATL 448 (609)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 448 (609)
+........+.+.++.+++++++.+.|+++ ++++..+. ...++++.+.. .+..++++.
T Consensus 323 l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~~~~~------------------~~~~~~~~~ 380 (432)
T 3ei9_A 323 LTPEGLEAMHKVIGFYKENTNIIIDTFTSL-GYDVYGGK---NAPYVWVHFPN------------------QSSWDVFAE 380 (432)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCEEECS---SSSEEEEECTT------------------SCHHHHHHH
T ss_pred HhcccHHHHHHHHHHHHHHHHHHHHHHHHC-CceecCCC---cceEEEEECCC------------------CCHHHHHHH
Confidence 111111235677888888999999999887 78777542 23444444432 356777787
Q ss_pred HhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 449 LNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 449 L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
|.++.||.+++|..|. +. .++++|||+. +++++++.+++.|++--.+
T Consensus 381 ll~~~gv~v~~g~~f~-~~--------------------------~~~~iRis~~--~~~e~l~~~l~rl~~~~~~ 427 (432)
T 3ei9_A 381 ILEKTHVVTTPGSGFG-PG--------------------------GEGFVRVSAF--GHRENILEACRRFKQLYKH 427 (432)
T ss_dssp HHHHHCEECEEGGGGC-GG--------------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHTT
T ss_pred HHHHCCEEEeCchHhC-CC--------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHhhh
Confidence 7777799999998776 21 1489999974 6999999999999875543
|
| >1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.6e-24 Score=220.96 Aligned_cols=308 Identities=14% Similarity=0.049 Sum_probs=213.4
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC---CCCCCcEEEeCChHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG---GGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g---~~~~~~vift~sGttaa 152 (609)
..+||+.+... +.++.+.+++.+.+... ..+. + .. ....++|+.++++++ ++++ +|++| +|++++
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~~~--y-~~----~~~~~lr~~la~~~~~~~~~~~-~v~~~-~G~~~a 88 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSD--ALRI--Y-YD----SPDEELIEKILSYLDTDFLSKN-NVSVG-NGADEI 88 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGG--GGGS--C-CC----SSCHHHHHHHHHHHTCSSCCGG-GEEEE-SSHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhh--hhhc--C-CC----CchHHHHHHHHHHcCCCCCCHH-HEEEc-CChHHH
Confidence 57999988774 46788999998876321 0110 1 10 125679999999999 7765 89998 788888
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
+..++.. + || .|++. +.|+++...++..|++++.++.++++.+|+++| .
T Consensus 89 l~~~~~~----------------~--gd--~Vl~~-p~y~~~~~~~~~~g~~~~~v~~~~~~~~d~~~l----~------ 137 (335)
T 1uu1_A 89 IYVMMLM----------------F--DR--SVFFP-PTYSCYRIFAKAVGAKFLEVPLTKDLRIPEVNV----G------ 137 (335)
T ss_dssp HHHHHHH----------------S--SE--EEECS-SSCHHHHHHHHHHTCEEEECCCCTTSCCCCCCC----C------
T ss_pred HHHHHHH----------------h--CC--cEEEC-CCcHHHHHHHHHcCCeEEEeccCCCCCCCHHHc----C------
Confidence 9888764 3 55 68899 999999888888999999999887767887776 2
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcc--cccCCCCCCCCccEEEEcCCCCCCCCC-CcEEE
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYV--EIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGIL 309 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~--~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L 309 (609)
+++++++++++||||.+.|.+++.++++.+| ++|+|++++.... ..+. ....+.++++.|+||++|.|+ ++|++
T Consensus 138 ~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~-~li~De~~~~~~~~~~~~~--~~~~~~~i~~~s~sK~~g~~G~r~G~~ 214 (335)
T 1uu1_A 138 EGDVVFIPNPNNPTGHVFEREEIERILKTGA-FVALDEAYYEFHGESYVDF--LKKYENLAVIRTFSKAFSLAAQRVGYV 214 (335)
T ss_dssp TTEEEEEESSCTTTCCCCCHHHHHHHHHTTC-EEEEECTTHHHHCCCCGGG--GGTCSSEEEEEESTTTTTCGGGCCEEE
T ss_pred CCCEEEEeCCCCCCCCCCCHHHHHHHHHhCC-EEEEECcchhhcchhHHHH--hhhCCCEEEEecchhhcCCcccCeEEE
Confidence 5899999999999999999999999999989 9999999873211 1121 111245789999999997332 47999
Q ss_pred EEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Q 038499 310 LMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIE 389 (609)
Q Consensus 310 ~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~ 389 (609)
++++++ ++.+.+. + ...+++......+. ++ +......+.+.++.+++++
T Consensus 215 ~~~~~~--~~~l~~~--------------------------~-~~~~~~~~~~~~~~-~~-l~~~~~~~~~~~~~~~~~~ 263 (335)
T 1uu1_A 215 VASEKF--IDAYNRV--------------------------R-LPFNVSYVSQMFAK-VA-LDHREIFEERTKFIVEERE 263 (335)
T ss_dssp EECHHH--HHHHHHH--------------------------S-CTTCSCHHHHHHHH-HH-HHTHHHHHHHHHHHHHHHH
T ss_pred EeCHHH--HHHHHHh--------------------------c-CCCCcCHHHHHHHH-HH-hCCHHHHHHHHHHHHHHHH
Confidence 998887 2222110 0 01123332222211 11 1222245677778888889
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
++.+.|+++ ++++..+ ..+++++.+ + . .+...+.+.|.+ .||.++++
T Consensus 264 ~l~~~L~~~-g~~~~~~----~~~~~~~~~-~-~----------------~~~~~~~~~l~~-~gi~v~~~--------- 310 (335)
T 1uu1_A 264 RMKSALREM-GYRITDS----RGNFVFVFM-E-K----------------EEKERLLEHLRT-KNVAVRSF--------- 310 (335)
T ss_dssp HHHHHHHHH-TCCBCCC----CSSEEEEEC-C-T----------------HHHHHHHHHHHH-HTEEEEEE---------
T ss_pred HHHHHHHHC-CcEEcCC----CCeEEEEEC-C-C----------------CCHHHHHHHHHH-CCEEEEEC---------
Confidence 999888776 5655322 234444333 3 1 245678888866 59999841
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
++++|||++ +.+|+++++++|+++
T Consensus 311 -------------------------~~~iRis~~---~~~~i~~~~~~l~~~ 334 (335)
T 1uu1_A 311 -------------------------REGVRITIG---KREENDMILRELEVF 334 (335)
T ss_dssp -------------------------TTEEEEECC---CHHHHHHHHHHHHCC
T ss_pred -------------------------CCeEEEEeC---CHHHHHHHHHHHHhh
Confidence 378999996 678999999998753
|
| >3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.4e-23 Score=220.81 Aligned_cols=350 Identities=12% Similarity=-0.019 Sum_probs=216.8
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHH-HHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYI-KKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~i-a~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
+.++.+.+++.+.+..-+ . +..+ ....++++.+ ++++|. .. +++++++|+. +++.++..++
T Consensus 13 ~~~~~i~~a~~~~~~~~~----~--~~~~----~~~~~l~~~~~a~~~g~-~~-~~v~~~sgt~-al~~al~~l~----- 74 (377)
T 3ju7_A 13 VPVIEYLDELKEIDASHI----Y--TNYG----PINQRFEQTIMSGFFQN-RG-AVTTVANATL-GLMAAIQLKK----- 74 (377)
T ss_dssp CCGGGGHHHHHHHHHHTC----C--SSSC----HHHHHHHHHHHHHTSTT-CS-EEEEESCHHH-HHHHHHHHHS-----
T ss_pred CCcHHHHHHHHHHHHcCC----c--ccCC----HHHHHHHHHHHHHHhCC-CC-eEEEeCCHHH-HHHHHHHHcC-----
Confidence 455667777776664211 0 0011 2367889999 999993 22 6788867665 6777766654
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCC--ceEEEEeccc
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKR--PILGSFSACS 243 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~--~~lv~~s~~s 243 (609)
+++|| .|+++.++|+++...++..|++++.+++++ ++.+|+++|++++.. ++ |++++ ++
T Consensus 75 ---------~~~Gd--~Vi~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~~----~~~~tk~v~---~~ 136 (377)
T 3ju7_A 75 ---------RKKGK--YALMPSFTFPATPLAAIWCGLEPYFIDISIDDWYMDKTVLWDKIEE----LKEEVAIVV---PY 136 (377)
T ss_dssp ---------CTTCC--EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTCSBCHHHHHHHHHH----HGGGEEEEC---CB
T ss_pred ---------CCCcC--EEEECCCCcHHHHHHHHHcCCEEEEEecCCccCCcCHHHHHHHHhc----CCCCceEEE---EE
Confidence 47899 799999999999999999999999999984 789999999999942 34 88776 56
Q ss_pred CccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCC--CCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC
Q 038499 244 NVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQ--TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF 321 (609)
Q Consensus 244 n~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~--~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~ 321 (609)
|+||...|+++|.++|+ ||+++|+|++|+.+... +..... ..+++++++++||+++++ ..|+++.+++.. .+.+
T Consensus 137 ~~~G~~~~~~~i~~la~-~~~~vi~D~a~a~g~~~-~~~~~g~~~~d~~~~S~~~~K~l~~g-~gG~~~~~~~~l-~~~~ 212 (377)
T 3ju7_A 137 ATFGSWMNLEEYEELEK-KGVPVVVDAAPGFGLMN-GGMHYGQDFSGMIIYSFHATKPFGIG-EGGLIYSKNEED-IQRI 212 (377)
T ss_dssp CGGGBCCCCHHHHHHHH-TTCCBEEECTTCTTCEE-TTEETTTTCSSEEEEECBTTSSSCCB-SCEEEEESCHHH-HHHH
T ss_pred CCCCCccCHHHHHHHHh-cCCEEEEECCCccCCeE-CCEeccCCCCcEEEEECCCCCcCCCC-CcEEEEECCHHH-HHHH
Confidence 78999999999999999 99999999999877542 222210 113444555578999974 457877765431 1122
Q ss_pred CCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce
Q 038499 322 PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI 401 (609)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i 401 (609)
.....+|.. ..| .........++.++.+.+. +. .....+.+.++.+++++++.+.|++++++
T Consensus 213 ~~~~~~g~~-----------~~~-~~~~~g~~~~~~~~~aa~~----~~--~l~~l~~~~~~~~~~~~~~~~~L~~~~~~ 274 (377)
T 3ju7_A 213 KRMGNFGFD-----------TNR-ECTMMGFNCKMSEYAAAIG----IA--TMKKWDDKLKERTRISEWYKQLLQSNGLM 274 (377)
T ss_dssp HHHTBTTBC-----------TTS-CBCSSCCBCCCCHHHHHHH----HH--HHHTHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHhcCCC-----------CCC-ceeeccccCCCCHHHHHHH----HH--HHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 222221111 000 0001122233444433221 11 12346677788888899999999877654
Q ss_pred EE-eCCCCCCCc-ceE-EEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCc--ccCC-hhhhhhcCCC
Q 038499 402 KI-LGNTSTKRQ-AIL-SFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGC--ACAG-PYGHHLLDLD 475 (609)
Q Consensus 402 ~v-~~~~~~~r~-~~~-~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~--~ca~-p~~~~ll~i~ 475 (609)
.+ +.+...... ..+ .+.+.. . .+.+.+.+.|.+ .||.++.+. .|.. |....+....
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~-~----------------~~~~~l~~~L~~-~gI~~~~~~~~~~~~~~~~~~~~~~~ 336 (377)
T 3ju7_A 275 KKGWQLQKTEAVIQQFMPILCPE-E----------------VRNKQVIEDLKK-QKIEARLYFSPSCHQQVLFRNYKSTD 336 (377)
T ss_dssp TTTCBCCCCSCBCCSSEEEECCT-T----------------SCHHHHHHHHHT-TTBCCBCTTSSCGGGSGGGTTSCBSC
T ss_pred cccccCCCCCcceEEEEEEEeCC-h----------------hhHHHHHHHHHH-CCCceecccCCccccchhhhcCCCCC
Confidence 21 112111111 112 222222 1 247889999966 599999875 3321 1111110011
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+.++.+ ..+.+||+++..+|++|+++++++|++++..
T Consensus 337 ~p~~~~~-----------~~~~l~lp~~~~~t~~di~~v~~~l~~~~~~ 374 (377)
T 3ju7_A 337 LTRTNKI-----------AKRIVSLPLWEGMTKEIVEQIVICLGQKVVS 374 (377)
T ss_dssp CHHHHHH-----------HHHEEEECCCTTCCHHHHHHHHHHHTC----
T ss_pred CHHHHHH-----------HhCEEECCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 1222222 1478999999999999999999999877654
|
| >3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-23 Score=224.17 Aligned_cols=307 Identities=13% Similarity=-0.003 Sum_probs=203.2
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH--HHHHHhcccchhhHHHHHHhhhc--C---------CCceEEEECCC
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK--RLQEVMGIAVPSILREKLIKCLR--D---------EERWVVFVGPH 189 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~--~l~~~l~~~~~~~~~~~~~~~l~--~---------gd~~~Vlv~~~ 189 (609)
..++|+.++++++++++ +|++| +|+++++. .++.++. . + || .|++..+
T Consensus 72 ~~~lr~~ia~~~~~~~~-~i~~t-~G~~~al~~~~~~~~l~---------------~~~~g~~~~~~~~gd--~Vlv~~p 132 (423)
T 3ez1_A 72 LPSARALFAGYLDVKAE-NVLVW-NNSSLELQGLVLTFALL---------------HGVRGSTGPWLSQTP--KMIVTVP 132 (423)
T ss_dssp CHHHHHHHHHHTTSCGG-GEEEC-SSCHHHHHHHHHHHHHH---------------TCCTTCSSCGGGGCC--EEEEEES
T ss_pred hHHHHHHHHHHhCCChh-hEEEe-CCcHHHHHHHHHHHHHh---------------ccCCCccccccCCCC--EEEEcCC
Confidence 56789999999999887 89998 78888887 6666652 4 5 46 7999999
Q ss_pred CccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEE-ecccCccccccCHH---HHHHHH-HHhCC
Q 038499 190 EHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSF-SACSNVTGIYSDTR---SIARLL-HQYGG 264 (609)
Q Consensus 190 ~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~-s~~sn~TG~~~dl~---~I~~la-~~~g~ 264 (609)
.|+.+...++..|++++.++.+.++ +|+++|++++++. ++++++++ ++++||||.+.|.+ +|+++| ++||+
T Consensus 133 ~y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~~---~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~ 208 (423)
T 3ez1_A 133 GYDRHFLLLQTLGFELLTVDMQSDG-PDVDAVERLAGTD---PSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDF 208 (423)
T ss_dssp CCHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHHSC---TTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTC
T ss_pred CcHHHHHHHHHcCCEEEeccCCCCC-CCHHHHHHHHhhC---CCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCC
Confidence 9999998999999999999998765 9999999999521 57888864 58999999999977 788888 89999
Q ss_pred eEEEeccccCCcc-------cccCCCC----CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEe
Q 038499 265 FACFDFAASGPYV-------EIDVRSG----QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNY 333 (609)
Q Consensus 265 ~vivD~A~~~~~~-------~id~~~~----~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~ 333 (609)
++|+|++++.... ..++..+ ...+.++++.|+||+++++.++|++++++++ ++.+...
T Consensus 209 ~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~--~~~~~~~--------- 277 (423)
T 3ez1_A 209 TIFADDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDN--IRWLSKY--------- 277 (423)
T ss_dssp EEEEECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHH--HHHHHHH---------
T ss_pred EEEEECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHH--HHHHHHH---------
Confidence 9999999873211 1111100 1125678899999985544569999999887 2222111
Q ss_pred ecccccccccccccccccccCCChhHHHHH-HHHHHHHHHH-hcCHH----HHHHHHHHHHHHHHHHhCCCC-ceEEeCC
Q 038499 334 VNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKE-YIGHE----VIKKQEETYIERALERLLPNQ-NIKILGN 406 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~-~~g~~----~i~~~~~~l~~~~~~~L~~~p-~i~v~~~ 406 (609)
......+++.+.+.+ .+++.-+... ....+ .+.++...+.+.+.+.|..++ ++++..+
T Consensus 278 ---------------~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p 342 (423)
T 3ez1_A 278 ---------------LGAQSIGPNKVEQARHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLP 342 (423)
T ss_dssp ---------------HHHSCSCCCHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCC
T ss_pred ---------------HhhhccCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCC
Confidence 000111222333321 1111110000 01112 223334444555566666665 4777654
Q ss_pred CCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc-CcccCChhhhhhcCCChhHHHHHHHH
Q 038499 407 TSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG-GCACAGPYGHHLLDLDEAQSYQIRSA 485 (609)
Q Consensus 407 ~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~-G~~ca~p~~~~ll~i~~~~~~~~~~~ 485 (609)
..+++.+...+ . .+...+.+.|.+ .||.+++ |..|... ..
T Consensus 343 ----~~g~~~~~~~~-~----------------~~~~~~~~~l~~-~gv~v~~~g~~~~~~--~~--------------- 383 (423)
T 3ez1_A 343 ----KGGYFISLDTA-E----------------PVADRVVKLAEA-AGVSLTPAGATYPAG--QD--------------- 383 (423)
T ss_dssp ----SBSSCEEEEES-S----------------SCHHHHHHHHHH-TTEECCCTTTTSSTT--CC---------------
T ss_pred ----CccEEEEEECC-C----------------CcHHHHHHHHHH-CCcEEecCcccccCC--CC---------------
Confidence 23444444333 1 146778888854 6999998 5555311 00
Q ss_pred HhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 486 IQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 486 ~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
..++++||+++.. ++++++.++++|+++++..
T Consensus 384 -------~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~~~ 415 (423)
T 3ez1_A 384 -------PHNRNLRLAPTRP-PVEEVRTAMQVVAACIRLA 415 (423)
T ss_dssp -------SSSCEEEECCSSS-CHHHHHHHHHHHHHHHHHH
T ss_pred -------CCCCeEEEEcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 0258999999766 9999999999999988653
|
| >3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=223.96 Aligned_cols=344 Identities=11% Similarity=-0.007 Sum_probs=220.4
Q ss_pred ceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHH--hC-CCCCCcEEEeCChHHHH
Q 038499 77 RLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKC--LG-GGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 77 ~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~--~g-~~~~~~vift~sGttaa 152 (609)
.+++++.+... +.++.+.+++.+.+.....+.....|.. .....++++.++++ .| .+++ +|+++ +|++++
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~y~~----~~g~~~lr~~la~~l~~g~~~~~-~v~~~-~G~~~a 107 (400)
T 3asa_A 34 TVINLSIGDTTQPLNASVAEAFASSIARLSSPTTCRGYGP----DFGLPALRQKLSEDFYRGFVDAK-EIFIS-DGAKVD 107 (400)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHHHTSSSCCCCCCC----TTCCHHHHHHHHHTTSTTSSCGG-GEEEE-SCHHHH
T ss_pred ceEeccCCCCCCCCCHHHHHHHHHHHhcccccccccCCCC----CCCCHHHHHHHHHHHHcCCCCHH-HEEEc-cChHHH
Confidence 57888877654 5677888888877653211111111111 12246788889998 47 5665 89998 788888
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCce-EEEEecCCCCCCCHHHHHHHHhhhccC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAE-VVEIGLDDDGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~-vv~v~~~~~g~ld~e~L~~al~~~~~~ 231 (609)
+..++..+ .+|| .|++..+.|+++...++..|++ ++.++.++++.++.+ +++ +
T Consensus 108 l~~~~~~~----------------~~gd--~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~-l~~-~------ 161 (400)
T 3asa_A 108 LFRLLSFF----------------GPNQ--TVAIQDPSYPAYLDIARLTGAKEIIALPCLQENAFFPE-FPE-D------ 161 (400)
T ss_dssp HHHHHHHH----------------CSSC--EEEEEESCCHHHHHHHHHTTCSEEEEEECCGGGTTCCC-CCT-T------
T ss_pred HHHHHHHc----------------CCCC--EEEECCCCcHHHHHHHHHcCCcceEecccchhcCcccC-hhh-c------
Confidence 88875543 5788 6888889999988888889999 999998754322221 211 1
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEecccc-CC---cccccCCCCCC-CCccEEEEcCCCCCCCC
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAAS-GP---YVEIDVRSGQT-DGYDAIFLSTHKFLGGP 303 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~-~~---~~~id~~~~~~-~~~D~v~~S~hK~lggp 303 (609)
++++++++++++||||.+.| +++|+++|++||+++|+|++++ .. ..+.++..+.. .+.++++.|++|++|.|
T Consensus 162 ~~~~~v~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~ 241 (400)
T 3asa_A 162 THIDILCLCSPNNPTGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFA 241 (400)
T ss_dssp CCCSEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTT
T ss_pred cCccEEEEeCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCc
Confidence 46889999999999999988 5568899999999999999987 32 12233332210 12358889999999733
Q ss_pred -CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHH
Q 038499 304 -GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKK 382 (609)
Q Consensus 304 -~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~ 382 (609)
.++|++++++++ ..... ... ..... .......++++......+ .++ +.+. ..+.+.+
T Consensus 242 GlriG~~~~~~~~--~~~~~-----~~~-----------~~~~~-~~~~~~~~~~~~~~~~a~-~~~-l~~~-~~~~~~~ 299 (400)
T 3asa_A 242 GIRLGWTVIPQEL--TYADG-----HFV-----------IQDWE-RFLSTTFNGASIPAQEAG-VAG-LSIL-PQLEAIH 299 (400)
T ss_dssp TCCCEEEECCTTC--BCTTS-----CBH-----------HHHHH-HHHHHHCCCCCHHHHHHH-HHH-HHHT-TTCHHHH
T ss_pred chheeEEeeChhh--ccchh-----hhH-----------HHHHH-HHhccCccCCChHHHHHH-HHH-hCcH-HHHHHHH
Confidence 348999998877 22110 000 00000 001111233333332222 222 2222 5667788
Q ss_pred HHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcc
Q 038499 383 QEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCA 462 (609)
Q Consensus 383 ~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ 462 (609)
+.+++++++.+.|+++ ++++..+. ...++++.+.+.+ .+...+.+.|.+++||.+++|..
T Consensus 300 ~~~~~~~~l~~~L~~~-g~~~~~~~---~~~~~~~~~~~~~----------------~~~~~~~~~l~~~~gv~v~~g~~ 359 (400)
T 3asa_A 300 YYRENSDLLRKALLAT-GFEVFGGE---HAPYLWVKPTQAN----------------ISDRDLFDFFLREYHIAITPGIG 359 (400)
T ss_dssp HHHHHHHHHHHHHHHT-TCEEEECS---SSSEEEEECCCTT----------------CCTTTHHHHHHHHHSEECEEGGG
T ss_pred HHHHHHHHHHHHHHHC-CCeeeCCC---CceEEEEeccCCC----------------CCHHHHHHHHHHhCCEEEeChhH
Confidence 8888999999999877 78887542 2344444413301 23446777776667999999887
Q ss_pred cCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 463 CAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 463 ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
|. +. .++++|||+ +.++++++.++++|+++++
T Consensus 360 f~-~~--------------------------~~~~iRis~--~~~~e~i~~~l~~l~~~~~ 391 (400)
T 3asa_A 360 FG-RS--------------------------GSGFVRFSS--LGKREDILAACERLQMAPA 391 (400)
T ss_dssp GC-GG--------------------------GTTCEEEEC--CSCHHHHHHHHHHHHC---
T ss_pred hC-CC--------------------------CCCEEEEEe--eCCHHHHHHHHHHHHHHHH
Confidence 75 21 147899994 5799999999999988764
|
| >3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-23 Score=227.98 Aligned_cols=343 Identities=17% Similarity=0.175 Sum_probs=217.5
Q ss_pred CCChHHHHHHHHHhhcCCc--cCCCCCCchhhHHHHHHHHHHH-HHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 87 GRSLRYIENYIINNVLPFY--GNTHTCDSYVGQHTTNMVHEAS-NYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~--~n~~~~~~~~~~~~~~~~~e~r-~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
.+.++.|.+++.+.+...| +++... ++.+....+..+++. +++++++|++. ..+++++|+. ++..++.++
T Consensus 55 ~~~~~~v~~a~~~~~~~~~~~g~~~~~-~~~g~~~~~~~e~~a~~~la~~~g~~~--~~v~~~sGs~-a~~~a~~~~--- 127 (447)
T 3h7f_A 55 NFVPRAVLQAQGSVLTNKYAEGLPGRR-YYGGCEHVDVVENLARDRAKALFGAEF--ANVQPHSGAQ-ANAAVLHAL--- 127 (447)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHTCSE--EECCCSSHHH-HHHHHHHHH---
T ss_pred CCCCHHHHHHHHHHhcCCccccCCccc-ccCccHHHHHHHHHHHHHHHHHcCCCc--eEEEeCCHHH-HHHHHHHHh---
Confidence 4558889999988775444 333321 223433444445444 99999999874 2343557876 566665554
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHH-H----HHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEE
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-S----WRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~----~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
+++|| .|++...+|+++.. . ....+..++.+++++ ++.+|+++|++++.+ .+++++
T Consensus 128 ------------~~~Gd--~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~i 189 (447)
T 3h7f_A 128 ------------MSPGE--RLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALE----FRPKVI 189 (447)
T ss_dssp ------------CCTTC--EEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCC--EEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHHh----cCCeEE
Confidence 47899 68988888877321 1 222345667777764 678999999999974 468899
Q ss_pred EEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhc
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQ 317 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~ 317 (609)
+++.++|+++. |+++|.++|++||+++|+|++|+.+............++|++++|+||+++||.| |+++.++++.
T Consensus 190 ~~~~~~~~~~~--~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~~g-G~i~~~~~~~- 265 (447)
T 3h7f_A 190 IAGWSAYPRVL--DFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRS-GLIVGKQQYA- 265 (447)
T ss_dssp EEECSSCCSCC--CHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCCSC-EEEEECGGGH-
T ss_pred EEcCCCCCCcc--CHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCCCe-EEEEECHHHH-
Confidence 99889998876 9999999999999999999998654321111111113679999999999999987 9999998762
Q ss_pred cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 318 LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
+.+.+.. .....+++.......++.++......+.+.+.++..++++++.+.|.+
T Consensus 266 -~~l~~~~------------------------~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 320 (447)
T 3h7f_A 266 -KAINSAV------------------------FPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMA 320 (447)
T ss_dssp -HHHHHHH------------------------TTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred -HHHhhhc------------------------CCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2221110 001124444333333332332111224567788888999999999987
Q ss_pred C----CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcC
Q 038499 398 N----QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 398 ~----p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~ 473 (609)
. ++++++... ....++.+.+.+ . .+....+.+.| ++.||.++.......+. ..+
T Consensus 321 ~~~~~~g~~~~~~~--~~~~~~~~~~~~-~---------------~~~~~~~~~~l-~~~GI~v~~~~i~~~~~-~p~-- 378 (447)
T 3h7f_A 321 PDVAKAGVSVVSGG--TDVHLVLVDLRD-S---------------PLDGQAAEDLL-HEVGITVNRNAVPNDPR-PPM-- 378 (447)
T ss_dssp HHHHHTTCEEGGGS--CSSSEEEEECTT-S---------------SCCHHHHHHHH-HHTTEECBC--------------
T ss_pred ccccCCCeEEecCC--CCCCEEEEEcCC-C---------------CCCHHHHHHHH-HHCCeEEecccCCCCCC-CCC--
Confidence 6 578887531 122344444433 1 14566777777 55699988322111000 000
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCC----CCHHHHHHHHHHHHHHHHhc
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY----MSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~----~t~eeid~ll~al~~v~~~~ 525 (609)
.++++|++++.. .+++|+++++++|++++...
T Consensus 379 --------------------~~~~lRig~~~~~~~~~~~eei~~~~~~l~~~l~~~ 414 (447)
T 3h7f_A 379 --------------------VTSGLRIGTPALATRGFGDTEFTEVADIIATALATG 414 (447)
T ss_dssp ----------------------CEEEEECHHHHHHTCCHHHHHHHHHHHHHHHHSG
T ss_pred --------------------CCCceeccCHHHhhCCCCHHHHHHHHHHHHHHHhcc
Confidence 247899998644 67999999999999887543
|
| >2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.8e-24 Score=227.51 Aligned_cols=325 Identities=16% Similarity=0.118 Sum_probs=201.8
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW- 198 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (609)
.....++++.+++++|.+ +.++++ +| ++++..++..+ +++|| .|+++..+|+++...|
T Consensus 57 ~~~~~~l~~~la~~~g~~--~~v~~~-sG-t~A~~~~l~~~---------------~~~gd--~vi~~~~~~~~~~~~~~ 115 (421)
T 2ctz_A 57 NPTVDVLEKRLAALEGGK--AALATA-SG-HAAQFLALTTL---------------AQAGD--NIVSTPNLYGGTFNQFK 115 (421)
T ss_dssp CHHHHHHHHHHHHHHTCS--EEEEES-SH-HHHHHHHHHHH---------------CCTTC--EEEECSCCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC--ceEEec-CH-HHHHHHHHHHH---------------hCCCC--EEEEeCCCchHHHHHHH
Confidence 356788999999999986 245554 78 55787777665 36888 7999999999998887
Q ss_pred ---HHcCceEEEE-ecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccc-c
Q 038499 199 ---RQSLAEVVEI-GLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAA-S 273 (609)
Q Consensus 199 ---~~~G~~vv~v-~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~-~ 273 (609)
+..|++++.+ +.+ |+++|+++|+ +++++|++++++||||.+.|+++|+++||+||+++|+|+++ +
T Consensus 116 ~~~~~~g~~~~~~~~~~-----d~~~l~~~i~-----~~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~ 185 (421)
T 2ctz_A 116 VTLKRLGIEVRFTSREE-----RPEEFLALTD-----EKTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGM 185 (421)
T ss_dssp THHHHTTCEEEECCTTC-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGG
T ss_pred HHHHHcCCEEEEECCCC-----CHHHHHHhhc-----cCCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccc
Confidence 6689999999 764 8999999998 68999999999999999999999999999999999999999 7
Q ss_pred CCcccccCCCCCCCCccEEEEcCCCCCCCCCC-cEEEEEec-h--h-h-ccCCCCCCccCCCceEeeccccccccccccc
Q 038499 274 GPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS-PGILLMTK-A--L-Y-QLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 274 ~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g-~G~L~~~~-~--~-~-~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
.++....+ . .++|++++|+||+++||++ +|++++.+ + + . ++..+.+...|+....+...+. ...|..
T Consensus 186 ~g~~~~~~-~---~~~Di~~~s~~K~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~--~~~~~~- 258 (421)
T 2ctz_A 186 GGYLLRPL-A---WGAALVTHSLTKWVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFG--ELAFIV- 258 (421)
T ss_dssp GGTSCCGG-G---GTCSEEEEETTTTTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHG--GGHHHH-
T ss_pred ccccCCcc-c---cCCeEEEECCcccccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcc--hhHHHH-
Confidence 76422111 1 2689999999999998764 77777752 2 1 0 0011223333322211110000 000111
Q ss_pred cccccc----CC-ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeC-CCC-------------
Q 038499 348 IEERES----GG-TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILG-NTS------------- 408 (609)
Q Consensus 348 ~~~r~~----~g-tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~-~~~------------- 408 (609)
..+++ .| ..+... +.+... .....+...++..++++++.+.|+++|+++++. +..
T Consensus 259 -~~r~~~~~~~g~~~~~~~---a~~~~~--~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~ 332 (421)
T 2ctz_A 259 -KARVDGLRDQGQALGPFE---AWVVLL--GMETLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYF 332 (421)
T ss_dssp -HHHHTHHHHHCCCCCHHH---HHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHH
T ss_pred -HHHHHHHHhcCCCCCHHH---HHHHHc--CcchHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhc
Confidence 01111 11 111111 111111 111233344555688999999999999998763 211
Q ss_pred -CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC---h--hhhhhcCCChhHHHHH
Q 038499 409 -TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG---P--YGHHLLDLDEAQSYQI 482 (609)
Q Consensus 409 -~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~---p--~~~~ll~i~~~~~~~~ 482 (609)
..+.++++|.+.. .. .....+.+.| +.++|.++.|..|.- | ..|. .+..+....
T Consensus 333 ~~~~g~ivsf~l~~-~~---------------~~~~~~~~~l-~~~~~~~~~G~~~sl~~~~~~~~h~--~~~~~~~~~- 392 (421)
T 2ctz_A 333 KGKPGAVLTFGLKG-GY---------------EAAKRFISRL-KLISHLANVGDTRTLAIHPASTTHS--QLSPEEQAQ- 392 (421)
T ss_dssp TTCCCSEEEEEETT-HH---------------HHHHHHHHTC-SSSEECSCCCCSSCEEECGGGTTTT--TSCHHHHHH-
T ss_pred cCCCceEEEEEeCC-CH---------------HHHHHHHHhC-CcceecccCCCCCceeeCCcccccc--cCCHHHHHh-
Confidence 2357789998865 10 0123344444 235667777744331 1 1221 122111111
Q ss_pred HHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 483 RSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 483 ~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
.|+.++.||+|++.+. ++.+++.|++
T Consensus 393 --------~g~~~~~vRlS~g~e~----~~~li~~l~~ 418 (421)
T 2ctz_A 393 --------AGVSPEMVRLSVGLEH----VEDLKAELKE 418 (421)
T ss_dssp --------HTCCTTEEEEECCSSC----HHHHHHHHHH
T ss_pred --------cCCCCCeEEEEeCCCC----HHHHHHHHHH
Confidence 2345699999998754 4555555544
|
| >3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-23 Score=224.52 Aligned_cols=161 Identities=19% Similarity=0.206 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW- 198 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~- 198 (609)
.....++++.+++++|.+ +++++++|+ +++..++..+ +++|| .|+++...|+++...|
T Consensus 58 ~~~~~~l~~~la~~~g~~---~~i~~~sG~-~ai~~~~~~~---------------~~~gd--~vl~~~~~y~~~~~~~~ 116 (389)
T 3acz_A 58 NPTVEQFEEMVCSIEGAA---GSAAFGSGM-GAISSSTLAF---------------LQKGD--HLIAGDTLYGCTVSLFT 116 (389)
T ss_dssp CHHHHHHHHHHHHHHTCS---EEEEESSHH-HHHHHHHTTT---------------CCTTC--EEEEESSCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCC---eEEEeCCHH-HHHHHHHHHH---------------hCCCC--EEEEeCCCchHHHHHHH
Confidence 455788999999999986 344555787 6787776654 36888 6999999999987775
Q ss_pred ---HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 199 ---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 199 ---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
+..|++++.++.. |+++|+++++ ++++++++++++||||.+.|+++|+++|++||+++|+|++++.+
T Consensus 117 ~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~ 186 (389)
T 3acz_A 117 HWLPRFGIEVDLIDTS-----DVEKVKAAWK-----PNTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSP 186 (389)
T ss_dssp HHHHHTTCEEEEECTT-----CHHHHHHTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCT
T ss_pred HHHHHcCCEEEEECCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccc
Confidence 5679999999863 8999999998 57999999999999999999999999999999999999999876
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEec-hh
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTK-AL 315 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~-~~ 315 (609)
.....+. .+.|+++.|+||+++||++ .|++++++ ++
T Consensus 187 ~~~~~~~----~~~di~~~S~sK~~~~~~~~~~G~v~~~~~~~ 225 (389)
T 3acz_A 187 CFLKPLE----LGADIALHSVSKYINGHGDVIGGVSSAKTAED 225 (389)
T ss_dssp TTCCGGG----TTCSEEEEETTTTTTCSSCCCCEEEEESSHHH
T ss_pred cccCccc----cCCeEEEECChhhccCCCCceeEEEEECcHHH
Confidence 5321121 2689999999999999876 59999998 76
|
| >1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=1.9e-23 Score=237.45 Aligned_cols=321 Identities=13% Similarity=0.098 Sum_probs=219.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-HHH
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-WRQ 200 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~ 200 (609)
.+.++++.+|+++|++. .++++ +|+++++..++.++ +++|| .|+++..+|.++... ++.
T Consensus 174 ~i~e~e~~lA~~~gae~--~i~v~-nGtt~an~~ai~al---------------~~pGD--~VLv~~~~H~S~~~~~~~l 233 (730)
T 1c4k_A 174 PAVAAEKHAARVYNADK--TYFVL-GGSSNANNTVTSAL---------------VSNGD--LVLFDRNNHKSVYNSALAM 233 (730)
T ss_dssp HHHHHHHHHHHHTTCSE--EEEES-SHHHHHHHHHHHHH---------------CCTTC--EEEEETTCCHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHCCCc--EEEEC-CHHHHHHHHHHHHh---------------cCCCC--EEEEcCCchHHHHHHHHHH
Confidence 57899999999999963 45555 89988888888776 47899 799999999999988 788
Q ss_pred cCceEEEEecCCC-----CCCCHHHH-----HHHHhhhc-c---CCCc-eEEEEecccCccccccCHHHHHHHHHHhCCe
Q 038499 201 SLAEVVEIGLDDD-----GLLDIEAL-----RSKLELYK-D---AKRP-ILGSFSACSNVTGIYSDTRSIARLLHQYGGF 265 (609)
Q Consensus 201 ~G~~vv~v~~~~~-----g~ld~e~L-----~~al~~~~-~---~~~~-~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~ 265 (609)
.|++++.++.+.+ |.+|+++| +++|++.. . ..++ ++++++++ |++|.+.|+++|+++||+||++
T Consensus 234 ~Ga~~v~v~~~~~~~~i~g~id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~dl~~I~~la~~~g~~ 312 (730)
T 1c4k_A 234 AGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYNAHEVVKRIGHLCDY 312 (730)
T ss_dssp TCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEECHHHHHHHHGGGBSE
T ss_pred CCCEEEEEeCCccccCccCCCCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecCHHHHHHHHHHcCCe
Confidence 9999999876432 34788888 88887420 0 1122 88999987 6899999999999999999999
Q ss_pred EEEeccccCC--cc-------cccCCCCCCCCcc----EEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceE
Q 038499 266 ACFDFAASGP--YV-------EIDVRSGQTDGYD----AIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVN 332 (609)
Q Consensus 266 vivD~A~~~~--~~-------~id~~~~~~~~~D----~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~ 332 (609)
+++|+||+.+ .. ++++.. .++| +++.|+||+++||.+.|+++++++. +......
T Consensus 313 livDeAh~~~~~f~~~~~g~~~l~~~~---~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~--l~g~~~~-------- 379 (730)
T 1c4k_A 313 IEFDSAWVGYEQFIPMMRNSSPLLIDD---LGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSH--IKGQLRY-------- 379 (730)
T ss_dssp EEEECTTCCGGGSSGGGGGGCTTSCCC---CCTTSCEEEEEECHHHHSSCCTTCEEEEEECGG--GTTSTTC--------
T ss_pred EEEEcccccccccCcccCCcCcccccc---cCCCCCCEEEEECCCCCCCCCCCEEEEEecchh--hcCcccc--------
Confidence 9999998742 11 122211 1566 9999999999999888999999887 3210000
Q ss_pred eecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHhCC-CCceEEeCCCC
Q 038499 333 YVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEY-IGHEVIKKQEETYIERALERLLP-NQNIKILGNTS 408 (609)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~-~g~~~i~~~~~~l~~~~~~~L~~-~p~i~v~~~~~ 408 (609)
+ +...+.........++|+...+. .+++.++ .. .| +...++..++++++++.|.+ +++++++++..
T Consensus 380 -i------~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l--~~~~g-~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~ 449 (730)
T 1c4k_A 380 -C------DHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQ--EGEAG-RKLWHDLLITTIEARKKLIKAGSMFRPFVPPV 449 (730)
T ss_dssp -C------CHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH--SHHHH-HHHHHHHHHHHHHHHHHHHHTTCSSEESSCSE
T ss_pred -c------CHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHH--Hhhhh-HHHHHHHHHHHHHHHHHHhhhCCCeEEccccc
Confidence 0 00001111123445677655443 3344433 22 23 34457788889999999987 78999987631
Q ss_pred C-------------------------------C-C-c------ce-EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHH
Q 038499 409 T-------------------------------K-R-Q------AI-LSFNIHSSTINSSLGENTKTETDKPLHGPFVATL 448 (609)
Q Consensus 409 ~-------------------------------~-r-~------~~-~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 448 (609)
. . . . |+ +++... +.+ .....-.+..+++..+.+.
T Consensus 450 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~p--g~~----~~~g~~~~~g~~~~~l~~~ 523 (730)
T 1c4k_A 450 VNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTP--GIN----PETGDYEDFGVPATIVANY 523 (730)
T ss_dssp ETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECTTEEEEECS--SEE----TTTTEECSSCCCHHHHHHH
T ss_pred cccccccccccccccccchhhccCccchhccccccCCcccccCCeEEEEEeC--Ccc----cccccccccCCCHHHHHHH
Confidence 0 0 0 0 11 333331 100 0000001223678899999
Q ss_pred HhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 449 LNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 449 L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
|.+. ||.++.. ..+.+|++++.++|++++++++++|+++.+...
T Consensus 524 L~e~-GI~v~~~---------------------------------~~~~ir~~~s~g~t~e~i~~Ll~aL~~i~~~~~ 567 (730)
T 1c4k_A 524 LRDH-GIIPEKS---------------------------------DLNSILFLMTPAETPAKMNNLITQLLQLQRLIE 567 (730)
T ss_dssp HHHT-TCCCSEE---------------------------------CSSEEEEECCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHC-CcEEEEC---------------------------------CCCeEEEEeCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 9765 9988621 147899999999999999999999999987543
|
| >3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.2e-23 Score=219.26 Aligned_cols=310 Identities=16% Similarity=0.130 Sum_probs=204.0
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH
Q 038499 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW 198 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (609)
......+++++++++.|.+ +++++++|+. ++..++..+ +++|| .|+++...|+++...+
T Consensus 79 ~~p~~~~l~~~la~~~g~~---~~~~~~sG~~-Ai~~al~~l---------------~~~Gd--~Vi~~~~~y~~~~~~~ 137 (414)
T 3ndn_A 79 GNPTVSVFEERLRLIEGAP---AAFATASGMA-AVFTSLGAL---------------LGAGD--RLVAARSLFGSCFVVC 137 (414)
T ss_dssp CCHHHHHHHHHHHHHHTCS---EEEEESSHHH-HHHHHHHTT---------------CCTTC--EEEEESCCCHHHHHHH
T ss_pred CChHHHHHHHHHHHHHCCC---cEEEECCHHH-HHHHHHHHH---------------hCCCC--EEEEcCCccchHHHHH
Confidence 3456788999999999973 5677767754 677766655 47898 6999999999987777
Q ss_pred HH----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccC
Q 038499 199 RQ----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 199 ~~----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~ 274 (609)
+. .|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|++||+++|+|++++.
T Consensus 138 ~~~~~~~g~~~~~v~~~-----d~~~l~~ai~-----~~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~ 207 (414)
T 3ndn_A 138 SEILPRWGVQTVFVDGD-----DLSQWERALS-----VPTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFAT 207 (414)
T ss_dssp HTHHHHTTCEEEEECTT-----CHHHHHHHTS-----SCCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTH
T ss_pred HHHHHHcCcEEEEeCCC-----CHHHHHHhcC-----CCCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcc
Confidence 54 89999999876 8999999998 6899999999999999999999999999999999999999886
Q ss_pred CcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccC-CCCCCccCCCceEeeccccccccccccccccc
Q 038499 275 PYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLG-SFPPSTCGGGTVNYVNGFNEKDTLYLEDIEER 351 (609)
Q Consensus 275 ~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~-~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r 351 (609)
+.....+ . .++|+++.|++|++||++. .|+++++++. +. .+... .+
T Consensus 208 ~~~~~~~-~---~g~div~~S~sK~l~~~G~~~~G~vv~~~~~--~~~~l~~~-------------------------~~ 256 (414)
T 3ndn_A 208 PLLQQGF-P---LGVDVVVYSGTKHIDGQGRVLGGAILGDREY--IDGPVQKL-------------------------MR 256 (414)
T ss_dssp HHHCCCG-G---GTCSEEEEETTTTTTCSSCCCCEEEEECHHH--HTTHHHHH-------------------------HH
T ss_pred cccCCch-h---cCCCeEeccCCccccCCCCceEEEEEECHHH--HHHHHHHH-------------------------HH
Confidence 5433222 1 2689999999999987553 7999998876 22 11100 00
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcceEEE
Q 038499 352 ESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAILSF 417 (609)
Q Consensus 352 ~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~~f 417 (609)
...++.+... +.+.. ......+...++..+.++++.+.|++.|++. +..+.- ....++++|
T Consensus 257 ~~g~~~~~~~---a~~~~--~~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~ 331 (414)
T 3ndn_A 257 HTGPAMSAFN---AWVLL--KGLETLAIRVQHSNASAQRIAEFLNGHPSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTF 331 (414)
T ss_dssp HHCCCCCHHH---HHHHH--HHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEE
T ss_pred HcCCCCCHHH---HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhcCCCEeEEECCCCCCCcCHHHHHHhCCCCceEEEE
Confidence 0112222111 11111 1122344555667778888899998888875 333310 013457788
Q ss_pred EeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC---hhhhhhcCCChhHHHHHHHHHhhCCCCCC
Q 038499 418 NIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG---PYGHHLLDLDEAQSYQIRSAIQKGYVGVK 494 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~---p~~~~ll~i~~~~~~~~~~~~~~~~~~~~ 494 (609)
.+.+ +.. ........+.+.| +.+++.+..|..|+- |.......+..+... ..|+.
T Consensus 332 ~l~~-~~~-----------~~~~~~~~~~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~---------~~g~~ 389 (414)
T 3ndn_A 332 ALDC-PED-----------VAKQRAFEVLDKM-RLIDISNNLGDAKSLVTHPATTTHRAMGPEGRA---------AIGLG 389 (414)
T ss_dssp EECS-CGG-----------GHHHHHHHHHHHC-SSSEECSCCSCSSCEEECGGGTTTCTTHHHHHH---------HTTCC
T ss_pred EEcC-Ccc-----------ccHHHHHHHHHhC-ccceEcCCCCCCCceeeCccccccccCCHHHHH---------hcCCC
Confidence 7754 100 0001245666777 457888888876552 222111112111110 13556
Q ss_pred CcEEEEecCCCCCHHHHHHHHHH
Q 038499 495 PGWTRISFPYYMSNEEFEFTLEA 517 (609)
Q Consensus 495 ~g~iRls~~~~~t~eeid~ll~a 517 (609)
+++||||++....++-++.+.++
T Consensus 390 ~~~iRlsvG~e~~~dli~dl~~a 412 (414)
T 3ndn_A 390 DGVVRISVGLEDTDDLIADIDRA 412 (414)
T ss_dssp TTEEEEECCSSCHHHHHHHHHHH
T ss_pred CCeEEEEeCcCCHHHHHHHHHHh
Confidence 89999999975444444444333
|
| >2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-22 Score=218.91 Aligned_cols=346 Identities=13% Similarity=0.066 Sum_probs=225.0
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
.|+.+.+++.+.+... . |.. ......++++.+++++|.+ ++++| +|+++++..++.++
T Consensus 30 ~p~~~~~a~~~~~~~~----~---y~~---~~~~~~~l~~~la~~~~~~---~v~~~-~ggt~al~~~l~~l-------- 87 (424)
T 2po3_A 30 DRARLYERLDRALDSQ----W---LSN---GGPLVREFEERVAGLAGVR---HAVAT-CNATAGLQLLAHAA-------- 87 (424)
T ss_dssp CHHHHHHHHHHHHHHT----C---CSS---SCHHHHHHHHHHHHHHTSS---EEEEE-SCHHHHHHHHHHHH--------
T ss_pred ChHHHHHHHHHHHhcC----C---ccc---CCHHHHHHHHHHHHHhCCC---eEEEe-CCHHHHHHHHHHHc--------
Confidence 3677888887766421 0 111 0234678999999999973 78998 67777888888775
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTG 247 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG 247 (609)
.+|| .|+++.++|+++...++..|++++.+++++ ++.+|+++|+++++ +++++++++ |+||
T Consensus 88 --------~~gd--~Vlv~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~d~~~l~~~i~-----~~~~~v~~~---~~tG 149 (424)
T 2po3_A 88 --------GLTG--EVIMPSMTFAATPHALRWIGLTPVFADIDPDTGNLDPDQVAAAVT-----PRTSAVVGV---HLWG 149 (424)
T ss_dssp --------TCCS--EEEEESSSCTHHHHHHHHTTCEEEEECBCTTTSSBCHHHHGGGCC-----TTEEEEEEE---CGGG
T ss_pred --------CCCC--EEEECCCccHHHHHHHHHcCCEEEEEecCCCcCCcCHHHHHHhhC-----cCCcEEEEE---CCCC
Confidence 3566 699999999999999999999999999986 67899999999987 578888875 4899
Q ss_pred cccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCC--CCCCCCCCcEEEEEe-chhhccCCCCCC
Q 038499 248 IYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTH--KFLGGPGSPGILLMT-KALYQLGSFPPS 324 (609)
Q Consensus 248 ~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~h--K~lggp~g~G~L~~~-~~~~~l~~~~p~ 324 (609)
...++++|.++|++||+++|+|++++.+.. .+...... ..|++++|+| |+++| ...|+++.+ +++ ++.+.+.
T Consensus 150 ~~~~l~~i~~la~~~~~~li~Dea~~~g~~-~~~~~~~~-~~di~~~S~sk~K~l~~-~~~G~~v~~~~~l--~~~l~~~ 224 (424)
T 2po3_A 150 RPCAADQLRKVADEHGLRLYFDAAHALGCA-VDGRPAGS-LGDAEVFSFHATKAVNA-FEGGAVVTDDADL--AARIRAL 224 (424)
T ss_dssp CCCCHHHHHHHHHHTTCEEEEECTTCTTCE-ETTEETTS-SSSEEEEECCTTSSSCC-SSCEEEEESCHHH--HHHHHHH
T ss_pred CcCCHHHHHHHHHHcCCEEEEECccccCCe-ECCeeccc-ccCEEEEeCCCCCCccC-CCCeEEEeCCHHH--HHHHHHH
Confidence 999999999999999999999999986543 22222211 2478888877 99986 557999998 565 2222222
Q ss_pred ccCCCceEeecccccccccccccccccccCCCh-hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 038499 325 TCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP-QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKI 403 (609)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp-~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v 403 (609)
...+... .+. ....|.+ .+.+. .+++.+. ...+.+.+.++.+++++++.+.|.++|++++
T Consensus 225 ~~~~~~~-----------~~~-----~~~~g~~~~~~~~-~aa~~l~--~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 285 (424)
T 2po3_A 225 HNFGFDL-----------PGG-----SPAGGTNAKMSEA-AAAMGLT--SLDAFPEVIDRNRRNHAAYREHLADLPGVLV 285 (424)
T ss_dssp HBTTTTC-----------TTC-----CTTCCCBCCCCHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHTCSCTTEEE
T ss_pred HhcCccc-----------ccc-----ccccCcCCCcCHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhccCCCccc
Confidence 1111110 000 0001111 01111 1111221 1223567788888899999999999989998
Q ss_pred eCCCC-CCC-cceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh--hhcCCC---h
Q 038499 404 LGNTS-TKR-QAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH--HLLDLD---E 476 (609)
Q Consensus 404 ~~~~~-~~r-~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~--~ll~i~---~ 476 (609)
..+.. ... ..++.+.+.. .. ...+..++.+.|.+ .||.+++. |..+... .+.+++ .
T Consensus 286 ~~~~~~~~~~~~~~~i~~~~-~~-------------~~~~~~~l~~~L~~-~gI~v~~~--~~~~~~~~~~~~~~g~~~~ 348 (424)
T 2po3_A 286 ADHDRHGLNNHQYVIVEIDE-AT-------------TGIHRDLVMEVLKA-EGVHTRAY--FSPGCHELEPYRGQPHAPL 348 (424)
T ss_dssp CCGGGGSCCCCCCEEEEECH-HH-------------HSSCHHHHHHHHHH-TTEECBCT--TCSCGGGSTTTTTSCCCCC
T ss_pred cCCCCCCccccEEEEEEECC-cc-------------chhhHHHHHHHHHH-CCCceecc--cCCccccchhhhhcCCCCC
Confidence 76311 111 1344444431 00 00357788888865 69999873 3211100 010111 0
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
+...++ ....+|++++.++|++|+++++++|+++++...
T Consensus 349 ~~~~r~-----------~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~~~~ 387 (424)
T 2po3_A 349 PHTERL-----------AARVLSLPTGTAIGDDDIRRVADLLRLCATRGR 387 (424)
T ss_dssp HHHHHH-----------HTTEEEECCSTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHH-----------hcCEEEeeCCCCCCHHHHHHHHHHHHHHHhhhH
Confidence 111111 135689998899999999999999999886543
|
| >2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=225.99 Aligned_cols=301 Identities=12% Similarity=0.083 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHh-----CCCCCCc---EEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 123 VHEASNYIKKCL-----GGGQEDA---MIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 123 ~~e~r~~ia~~~-----g~~~~~~---vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
..++++.+++++ +++++ + |++| +|+++++..++..+ +++|| .|++..+.|+++
T Consensus 90 ~~~lr~~ia~~~~~~~~~~~~~-~~~~i~~t-~g~~~al~~~~~~l---------------~~~gd--~Vl~~~p~y~~~ 150 (430)
T 2x5f_A 90 IEELRDLWQQKMLRDNPELSID-NMSRPIVT-NALTHGLSLVGDLF---------------VNQDD--TILLPEHNWGNY 150 (430)
T ss_dssp CHHHHHHHHHHHHHHCTTCCGG-GBCCCEEE-SHHHHHHHHHHHHH---------------CCTTC--EEEEESSCCTHH
T ss_pred CHHHHHHHHHHHhccCcccCCC-ccceEEEc-CCchHHHHHHHHHH---------------hCCCC--EEEEcCCcCccH
Confidence 456778888888 77776 7 8998 78888999988876 37888 699999999999
Q ss_pred HHHHHH-cCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHH-----hCC
Q 038499 195 LLSWRQ-SLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQ-----YGG 264 (609)
Q Consensus 195 ~~~~~~-~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~-----~g~ 264 (609)
...++. .|++++.++.++ ++.+|+++|++++++. ..+++++++++++||||.+.| +++|+++|++ ||+
T Consensus 151 ~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~ 228 (430)
T 2x5f_A 151 KLVFNTRNGANLQTYPIFDKDGHYTTDSLVEALQSY--NKDKVIMILNYPNNPTGYTPTHKEVTTIVEAIKALANKGTKV 228 (430)
T ss_dssp HHHHTTTTCCEEEEECCBCTTSCBCSHHHHHHHHHC--CSSEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEE
T ss_pred HHHHHHhcCCeEEEEeccCccCCcCHHHHHHHHHhc--CCCCEEEEEcCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCE
Confidence 888888 999999999876 4578999999999842 127899999999999999999 7889999999 999
Q ss_pred eEEEeccccCCccc----ccCC-CC-CCCCc---cEEEEcCCCCCCCCC-CcEEEEE---echhhccCCCCCCccCCCce
Q 038499 265 FACFDFAASGPYVE----IDVR-SG-QTDGY---DAIFLSTHKFLGGPG-SPGILLM---TKALYQLGSFPPSTCGGGTV 331 (609)
Q Consensus 265 ~vivD~A~~~~~~~----id~~-~~-~~~~~---D~v~~S~hK~lggp~-g~G~L~~---~~~~~~l~~~~p~~~ggg~v 331 (609)
++|+|++++..... ..+. .+ ...+. ++++.|+||++|.|+ ++|++++ ++++ ++.+......
T Consensus 229 ~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~riG~~~~~~~~~~~--~~~l~~~~~~---- 302 (430)
T 2x5f_A 229 IAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGFRVGFMTFGTSDQTT--KEVLEAKVKG---- 302 (430)
T ss_dssp EEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGGCCEEEEEBCCCHHH--HHHHHHHHHH----
T ss_pred EEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCCCeEEEEEecCCHHH--HHHHHHHHhh----
Confidence 99999998753211 1111 11 01234 677889999997443 4799999 8777 2222110000
Q ss_pred EeecccccccccccccccccccCCChhHHHHH--HHHHH-HHHHHhcCHHHHHHHHHHHHHHHHHHhC----CCCceEEe
Q 038499 332 NYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALA-FWVKEYIGHEVIKKQEETYIERALERLL----PNQNIKIL 404 (609)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~-~~~~~~~g~~~i~~~~~~l~~~~~~~L~----~~p~i~v~ 404 (609)
..+....+++..... .+++. -. .-....+.+.++.+++++++.+.|+ .+ ++++.
T Consensus 303 -----------------~~~~~~~~~~~~~~~a~~~~l~~~~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~ 363 (430)
T 2x5f_A 303 -----------------LIRSNISSGPLPTQSAVKHVLKNNK-QFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAY 363 (430)
T ss_dssp -----------------HHHTTTSSCCHHHHHHHHHHHHSCH-HHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEEC
T ss_pred -----------------hhhcccCCCChHHHHHHHHHHccCh-HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-Cceee
Confidence 001112233333222 22222 00 0001134477888888999999998 55 78876
Q ss_pred CCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHH
Q 038499 405 GNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRS 484 (609)
Q Consensus 405 ~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~ 484 (609)
.+ ..+++.+...+ + .+...+.+.|.+++||.+++| .
T Consensus 364 ~~----~~g~~~~~~~~-~----------------~~~~~~~~~l~~~~gi~v~~g---~-------------------- 399 (430)
T 2x5f_A 364 DF----NSGYFMAIKVH-D----------------VDPEALRKHLIDKYSIGVIAL---N-------------------- 399 (430)
T ss_dssp CC----CBSSEEEEEES-S----------------SCHHHHHHHHHHHHCEECEEC---S--------------------
T ss_pred CC----CceEEEEeCCC-C----------------CCHHHHHHHHHHhCCEEEecC---C--------------------
Confidence 54 34554443332 1 357788888876569999865 0
Q ss_pred HHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 485 AIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 485 ~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
++++||++++ ++++++++++++|+++++.
T Consensus 400 ----------~~~iRis~~~-~~~e~i~~~~~~l~~~l~~ 428 (430)
T 2x5f_A 400 ----------ATDIRIAFSC-VEKDDIPHVFDSIAKAIDD 428 (430)
T ss_dssp ----------SSEEEEEGGG-SCGGGHHHHHHHHHHHHHH
T ss_pred ----------CCeEEEEEec-CCHHHHHHHHHHHHHHHHh
Confidence 4799999985 5999999999999998765
|
| >3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.1e-24 Score=226.23 Aligned_cols=307 Identities=13% Similarity=0.025 Sum_probs=190.6
Q ss_pred HHHHHHHHHHHh------CCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCC---ceEEEEC-CCCcc
Q 038499 123 VHEASNYIKKCL------GGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE---RWVVFVG-PHEHH 192 (609)
Q Consensus 123 ~~e~r~~ia~~~------g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd---~~~Vlv~-~~~h~ 192 (609)
..++|+.+++++ +++++ +|++| +|++++++.++..+. ++|| +..|+++ .++|+
T Consensus 77 ~~~lr~~ia~~~~~~~g~~~~~~-~i~~t-~G~t~al~~~~~~l~---------------~~gd~~~~~~vi~~~~p~~~ 139 (417)
T 3g7q_A 77 KTALLNALAVLLRETLGWDIEPQ-NIALT-NGSQSAFFYLFNLFA---------------GRRADGSTKKVLFPLAPEYI 139 (417)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SCHHHHHHHHHHHHS---------------BC----CCBEEEESSCCCHH
T ss_pred cHHHHHHHHHHHHHHhCCCCCcc-cEEEe-CCcHHHHHHHHHHHc---------------CCCccCCcceEEEeCCCccc
Confidence 445666666665 45565 89999 788889999988773 5654 2257776 88888
Q ss_pred chHHHHHH------cCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHh
Q 038499 193 SNLLSWRQ------SLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQY 262 (609)
Q Consensus 193 s~~~~~~~------~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~ 262 (609)
.+...+.. .+..+..++.+. ++.+|+++|+ ++ ++++++++++++||||.+.| +++|+++|++|
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-----~~~~~v~~~~p~NptG~~~~~~~~~~l~~~a~~~ 212 (417)
T 3g7q_A 140 GYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IG-----EETGMICVSRPTNPTGNVITDEELMKLDRLANQH 212 (417)
T ss_dssp HHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHT
T ss_pred cchhhccchhhhccccCcccccCCcccccccCHHHhc--cc-----cCceEEEECCCCCCCCCccCHHHHHHHHHHHHHc
Confidence 77655432 234455555432 3467888887 55 68999999999999999999 78899999999
Q ss_pred CCeEEEeccccCCcccccCCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccc
Q 038499 263 GGFACFDFAASGPYVEIDVRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEK 340 (609)
Q Consensus 263 g~~vivD~A~~~~~~~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (609)
|+++|+|++++.+......... ...+.++++.|+||+.++..++|+++.++++ ++.+...
T Consensus 213 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~--~~~~~~~---------------- 274 (417)
T 3g7q_A 213 NIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKLGLPGSRCGIIIANDKT--ITAIANM---------------- 274 (417)
T ss_dssp TCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGGTCTTSCCEEEECCHHH--HHHHHHH----------------
T ss_pred CCEEEEeCCCccccccccccccccCCCCCEEEEEechhccCCCcceEEEEeCHHH--HHHHHHh----------------
Confidence 9999999998753322221111 1135688899999964323358999998887 2222111
Q ss_pred cccccccccccccCCChhHHHHHHHHHHHHHHHhcCHH-----HHHHHHHHHHHHHHHHhCC-CC--ceEEeCCCCCCCc
Q 038499 341 DTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHE-----VIKKQEETYIERALERLLP-NQ--NIKILGNTSTKRQ 412 (609)
Q Consensus 341 ~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~-----~i~~~~~~l~~~~~~~L~~-~p--~i~v~~~~~~~r~ 412 (609)
......+++.+.+.+. .+++ +..... .+.++.++.++++.+.|.+ ++ ++.+..+ ..
T Consensus 275 --------~~~~~~~~~~~~~~~~--~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~----~~ 338 (417)
T 3g7q_A 275 --------NGIISLAPGGMGPAMM--CEMI--KRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHKP----EG 338 (417)
T ss_dssp --------HHHHCCCCCSHHHHHH--HHHH--HTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEECC----CB
T ss_pred --------hcceeeCCCcHHHHHH--HHHH--cCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeCC----Cc
Confidence 0111122223332211 1121 112221 1344455555555555543 34 4677655 23
Q ss_pred ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCC
Q 038499 413 AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVG 492 (609)
Q Consensus 413 ~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~ 492 (609)
+++.+...+ .. ..+...+.+.|.+ .||.+++|..|........ +
T Consensus 339 g~~~~~~~~-~~--------------~~~~~~l~~~l~~-~gi~v~~g~~f~~~~~~~~---~----------------- 382 (417)
T 3g7q_A 339 AIFLWLWFK-DL--------------PITTELLYQRLKA-RGVLMVPGHYFFPGLDKPW---P----------------- 382 (417)
T ss_dssp SSEEEEECT-TC--------------SSCHHHHHHHHHH-TTEECEEGGGGCTTBSSCC---G-----------------
T ss_pred ceEEEEEcC-CC--------------CCCHHHHHHHHHH-CCEEEECchhhCCCCcccc---c-----------------
Confidence 444444433 10 1467889988854 6999999988763210000 0
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 493 VKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 493 ~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
..++++|||++. ++++++.++++|+++++..
T Consensus 383 ~~~~~iRis~~~--~~~~i~~~~~~l~~~l~~~ 413 (417)
T 3g7q_A 383 HTHQCMRMNYVP--EPDKIEAGVKILAEEIERA 413 (417)
T ss_dssp GGGGEEEEESCS--CHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEecC--CHHHHHHHHHHHHHHHHHH
Confidence 014799999985 9999999999999988754
|
| >2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-23 Score=235.52 Aligned_cols=313 Identities=15% Similarity=0.125 Sum_probs=222.2
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
....++++.+++++|.+. .++++ +|+++++..++.++ +++|| .|+++..+|+++...++.
T Consensus 205 g~v~~~ee~la~l~G~d~--~i~~~-~Gtt~a~~~~i~al---------------~~~GD--~Vlv~~~~h~s~~~~~~~ 264 (755)
T 2vyc_A 205 GAFGESEKYAARVFGADR--SWSVV-VGTSGSNRTIMQAC---------------MTDND--VVVVDRNCHKSIEQGLML 264 (755)
T ss_dssp HHHHHHHHHHHHHHTCSE--EEEES-SHHHHHHHHHHHHH---------------CCTTC--EEEEESSCCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhCCCc--eEEEC-CcHHHHHHHHHHHh---------------cCCCC--EEEECCCchHHHHHHHHH
Confidence 456788999999999862 45565 89988888888876 47899 799999999999999999
Q ss_pred cCceEEEEecCCC-----CCC-----CHHHHHHHHhhhc-----cCCCceEEEEecccCccccccCHHHHHHHHHHhCCe
Q 038499 201 SLAEVVEIGLDDD-----GLL-----DIEALRSKLELYK-----DAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGF 265 (609)
Q Consensus 201 ~G~~vv~v~~~~~-----g~l-----d~e~L~~al~~~~-----~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~ 265 (609)
.|+++++++.+.+ |.+ |+++|+++|++.. ...++++++++++ |+||.+.|+++|+++||+||++
T Consensus 265 ~G~~~v~v~~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~dl~~I~~ia~~~~~~ 343 (755)
T 2vyc_A 265 TGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYNAKEAQDLLEKTSDR 343 (755)
T ss_dssp HCCEEEEECCCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEECHHHHHHHHTTTCSE
T ss_pred cCCEEEEEeCCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecCHHHHHHHHHHcCCE
Confidence 9999999987643 346 9999999997520 1123458889987 7999999999999999999999
Q ss_pred EEEeccccCCcc--cc--cCCCCCCCC--ccE------EEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEe
Q 038499 266 ACFDFAASGPYV--EI--DVRSGQTDG--YDA------IFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNY 333 (609)
Q Consensus 266 vivD~A~~~~~~--~i--d~~~~~~~~--~D~------v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~ 333 (609)
+++|+||+.... +. +..++ .+ +|+ +++|+||+++||.+.|+++++++...++.
T Consensus 344 livDeA~~~~~~~~~~~~~~~~~--~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~------------- 408 (755)
T 2vyc_A 344 LHFDEAWYGYARFNPIYADHYAM--RGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINF------------- 408 (755)
T ss_dssp EEEECTTCTTGGGCGGGTTSSSS--CSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCH-------------
T ss_pred EEEECcCchhcccCcccCCcchh--cCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCH-------------
Confidence 999999875321 11 12221 24 565 99999999999988899999876200110
Q ss_pred ecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc---------eE
Q 038499 334 VNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN---------IK 402 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~---------i~ 402 (609)
..+.........++|++..+. .+++.+. ...|.+.+.++..++++++++.|+++++ ++
T Consensus 409 ---------~~~~~~~~~~~s~sp~~~~iaal~aA~~~l--~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~~ 477 (755)
T 2vyc_A 409 ---------SRFNQAYMMHATTSPLYAICASNDVAVSMM--DGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFK 477 (755)
T ss_dssp ---------HHHHHHHHHTSCSSCCHHHHHHHHHHHHHH--STHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCE
T ss_pred ---------HHHHHHHHHhCCCCHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhccccccccccceee
Confidence 000001133456777766544 3333332 3333456778888999999999988877 88
Q ss_pred EeCCCCCC------C---------------------------------c-------ceEEEEeccCCCCCcCCCCCCCCC
Q 038499 403 ILGNTSTK------R---------------------------------Q-------AILSFNIHSSTINSSLGENTKTET 436 (609)
Q Consensus 403 v~~~~~~~------r---------------------------------~-------~~~~f~~~~~~~~~~~~~~~~~~~ 436 (609)
++++.... + . ..+++.+.+ . +.+
T Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~--~---------~~~ 546 (755)
T 2vyc_A 478 PWNKEVVTDPQTGKTYDFADAPTKLLTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPG--M---------GED 546 (755)
T ss_dssp ESSCSEEECTTTCCEEEGGGSCHHHHHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSC--B---------CTT
T ss_pred ccCchhccccccccccccccccchhccchhhhhccCcccccccccccCCCccccCCeEEEEEcCC--C---------CCC
Confidence 88764210 0 0 122333321 0 112
Q ss_pred C----CCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHH
Q 038499 437 D----KPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512 (609)
Q Consensus 437 ~----~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid 512 (609)
| .++++..+.+.|.+ +||++... ..+.+|+++++++|+++++
T Consensus 547 G~~~~~g~~~~~l~~~L~~-~gI~~e~~---------------------------------~~~~v~~~~~~g~t~~~~~ 592 (755)
T 2vyc_A 547 GELEETGVPAALVTAWLGR-HGIVPTRT---------------------------------TDFQIMFLFSMGVTRGKWG 592 (755)
T ss_dssp SSBCSSCCCHHHHHHHHHT-TTCCCSEE---------------------------------CSSEEEEECCTTCCTTTTH
T ss_pred CCccccCCcHHHHHHHHHH-CCCEEeec---------------------------------CCCeEEEEECCCCCHHHHH
Confidence 2 24677899999965 89987621 1478999999999999999
Q ss_pred HHHHHHHHHHHhc
Q 038499 513 FTLEALEFIAIYG 525 (609)
Q Consensus 513 ~ll~al~~v~~~~ 525 (609)
+++++|.++.+..
T Consensus 593 ~l~~al~~~~~~~ 605 (755)
T 2vyc_A 593 TLVNTLCSFKRHY 605 (755)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999998654
|
| >3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=8e-23 Score=224.70 Aligned_cols=322 Identities=14% Similarity=0.049 Sum_probs=208.3
Q ss_pred HHHHHHHHHHHHHHhC-C--CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCC--ceEEEECCCCccch
Q 038499 120 TNMVHEASNYIKKCLG-G--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE--RWVVFVGPHEHHSN 194 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g-~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd--~~~Vlv~~~~h~s~ 194 (609)
..+++.+.+++++..| . +++ +|++| +|+++++..++.++. ++|| +..|+++.+.|+++
T Consensus 132 ~~lr~~ia~~~~~~~gG~~~~~~-~i~~t-~G~~~ai~~~~~~l~---------------~~gd~~~d~Vlv~~p~y~~~ 194 (498)
T 3ihj_A 132 NCIREDVAAYITRRDGGVPADPD-NIYLT-TGASDGISTILKILV---------------SGGGKSRTGVMIPIPQYPLY 194 (498)
T ss_dssp HHHHHHHHHHHHHHTTTCCCCGG-GEEEE-SSHHHHHHHHHHHHC---------------CCCGGGSEEEEEEESCCTHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcc-cEEEc-CCHHHHHHHHHHHHc---------------CCCCCCCCEEEEeCCCchhH
Confidence 4455555555555553 4 454 89998 889999999988773 5654 23799999999999
Q ss_pred HHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEe
Q 038499 195 LLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFD 269 (609)
Q Consensus 195 ~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD 269 (609)
...++..|++++.+++++ ++.+|+++|++++++.....+++++++++++||||.+.+ +++|+++|++||+++|+|
T Consensus 195 ~~~~~~~g~~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s~~~l~~i~~la~~~~~~li~D 274 (498)
T 3ihj_A 195 SAVISELDAIQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQSRKCIEDVIHFAWEEKLFLLAD 274 (498)
T ss_dssp HHHHHHTTCEEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred HHHHHHcCCEEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCCHHHHHHHHHHHHHcCcEEEEE
Confidence 999999999999999876 358999999999985321115899999999999999977 566999999999999999
Q ss_pred ccccCCccc-----ccCCCCCC-------CCc-cEEEEcCCCCCCC-C-CCcEEEEE---echhhccCCCCCCccCCCce
Q 038499 270 FAASGPYVE-----IDVRSGQT-------DGY-DAIFLSTHKFLGG-P-GSPGILLM---TKALYQLGSFPPSTCGGGTV 331 (609)
Q Consensus 270 ~A~~~~~~~-----id~~~~~~-------~~~-D~v~~S~hK~lgg-p-~g~G~L~~---~~~~~~l~~~~p~~~ggg~v 331 (609)
++++..... ..+..... ... .+++.|++|.+.| | .+.|++++ ++++ ++.+...
T Consensus 275 e~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~~~~~l--~~~l~~~------- 345 (498)
T 3ihj_A 275 EVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVINLHPEI--KGQLVKL------- 345 (498)
T ss_dssp CTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEESCCHHH--HHHHHHH-------
T ss_pred cCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEecCCHHH--HHHHHHH-------
Confidence 998753221 11111000 012 2567799999943 2 34799984 5555 2221100
Q ss_pred EeecccccccccccccccccccCCChhHHHHH-HHHHH----------HHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc
Q 038499 332 NYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALA----------FWVKEYIGHEVIKKQEETYIERALERLLPNQN 400 (609)
Q Consensus 332 ~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~----------~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~ 400 (609)
.....+++...+.+ .+++. .+++ ..+.+.++.++.++++.+.|.++|+
T Consensus 346 ------------------~~~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~---~~~~~~~~l~~~~~~l~~~L~~~~g 404 (498)
T 3ihj_A 346 ------------------LSVRLCPPVSGQAAMDIVVNPPVAGEESFEQFSR---EKESVLGNLAKKAKLTEDLFNQVPG 404 (498)
T ss_dssp ------------------HHHSCCCCHHHHHHHHHHTCCCCTTSTTHHHHHH---HHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred ------------------HhccCCCCHHHHHHHHHHhcCCccCcccHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 01112222233321 11110 0111 1345667788889999999999999
Q ss_pred eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHH-HHHHhhhcCcEeccCcccCChhhhhhcCCChhHH
Q 038499 401 IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFV-ATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQS 479 (609)
Q Consensus 401 i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v-~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~ 479 (609)
+++..+ ..+++.|.....+.... .......++...+ +..|+++.||.+++|..|..+.
T Consensus 405 ~~~~~p----~gg~~~~~~l~~p~~~~-----~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~------------ 463 (498)
T 3ihj_A 405 IHCNPL----QGAMYAFPRIFIPAKAV-----EAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQRE------------ 463 (498)
T ss_dssp EECCCC----CBSSEECCEECCCHHHH-----HHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCT------------
T ss_pred cEecCC----CeEEEEEEeccCchhhh-----HHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCC------------
Confidence 988755 34666654221010000 0000001334443 4444466799999998876321
Q ss_pred HHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 480 YQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 480 ~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++|+++. .++++++.++++|+.+.++.
T Consensus 464 --------------~~~~~Ris~~--~~~e~l~~~i~~L~~~~~~~ 493 (498)
T 3ihj_A 464 --------------GTYHFRMTIL--PPVEKLKTVLQKVKDFHINF 493 (498)
T ss_dssp --------------TCCBEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCEEEEEeC--CCHHHHHHHHHHHHHHHHHH
Confidence 1478999995 79999999999999888654
|
| >3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.7e-23 Score=221.76 Aligned_cols=343 Identities=15% Similarity=0.101 Sum_probs=206.8
Q ss_pred CCChHHHHHHHHHhhcCCc--cCCCCCCchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 87 GRSLRYIENYIINNVLPFY--GNTHTCDSYVGQHTT-NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~--~n~~~~~~~~~~~~~-~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
.+.++.|.+++.+.+...| ++++.. ++.+.... ...+.+++.+++++|.+.. .+++++|+. ++..++..+
T Consensus 42 ~~~~~~v~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~v~~~~Gs~-a~~~al~~~--- 114 (425)
T 3ecd_A 42 NIVSRAVLDAQGSVLTNKYAEGYPGKR-YYGGCEFADEVEALAIERVKRLFNAGHA--NVQPHSGAQ-ANGAVMLAL--- 114 (425)
T ss_dssp CCCCHHHHHHHTSGGGSSCTTC-------------CCHHHHHHHHHHHHHHTCSEE--ECCCSSHHH-HHHHHHHHH---
T ss_pred CCCCHHHHHHHhhhhhcccccCCCcch-hcCCChHHHHHHHHHHHHHHHHhCCCCc--eeecCchHH-HHHHHHHHc---
Confidence 4558889999988775443 233221 22222221 3344466889999998643 345657776 566666655
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHH-HH--HHcCc--eEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEE
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SW--RQSLA--EVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~--~~~G~--~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
+++|| .|++..++|+++.. .. ...|. +++.++.++ ++.+|+++|++++++ ++++++
T Consensus 115 ------------~~~gd--~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~----~~~~~v 176 (425)
T 3ecd_A 115 ------------AKPGD--TVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQ----HKPSLI 176 (425)
T ss_dssp ------------CCTTC--EEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCC--EEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHhh----cCCcEE
Confidence 37888 69999999988332 22 23454 555666653 478999999999975 478999
Q ss_pred EEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhc
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQ 317 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~ 317 (609)
++++++| |...++++|.++|++||+++|+|++|+.+.............+|+++.|+||+++||.+ |+++.+++..
T Consensus 177 ~~~~~~~--~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~-g~~~~~~~~~- 252 (425)
T 3ecd_A 177 IAGFSAY--PRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRG-GFVLTNDEEI- 252 (425)
T ss_dssp EEECSCC--CSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSC-EEEEESCHHH-
T ss_pred EEccccC--CCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCc-EEEEeCCHHH-
Confidence 9988777 57789999999999999999999997654332111111112469999999999988874 9999985431
Q ss_pred cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 318 LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
.+.+.+....+ ..++++......++.++......+.+.+.++.+++++++.+.|.+
T Consensus 253 ~~~~~~~~~~~------------------------~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~ 308 (425)
T 3ecd_A 253 AKKINSAVFPG------------------------LQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKA 308 (425)
T ss_dssp HHHHHHHHC-----------------------------CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhCcc------------------------ccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 11111110000 012333333333332322112234567888888999999999987
Q ss_pred CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChh
Q 038499 398 NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEA 477 (609)
Q Consensus 398 ~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~ 477 (609)
. ++++..+. ....++++.+.+ .. .+...+.+.|.+ .||.++.+.........
T Consensus 309 ~-g~~~~~~~--~~~~~~~~~~~~-~~---------------~~~~~~~~~l~~-~gi~v~~~~~p~~~~~~-------- 360 (425)
T 3ecd_A 309 G-GVDLVTGG--TDNHLLLVDLRP-KG---------------LKGAQVEQALER-AGITCNKNGIPFDPEKP-------- 360 (425)
T ss_dssp T-TCEEGGGS--CSSSEEEEECGG-GT---------------CCHHHHHHHHHH-TTEECEECCCTTCSSCT--------
T ss_pred C-CCeeccCC--CCceEEEEEeCC-CC---------------CCHHHHHHHHHH-cCCEecccccCCCCCCC--------
Confidence 4 78887542 233455555443 11 356788888854 69999955421100000
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEecCCCC----CHHHHHHHHHHHHHHHHhc
Q 038499 478 QSYQIRSAIQKGYVGVKPGWTRISFPYYM----SNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~g~iRls~~~~~----t~eeid~ll~al~~v~~~~ 525 (609)
..++.+|++++.++ +++++++++++|+++++..
T Consensus 361 ---------------~~~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~~~ 397 (425)
T 3ecd_A 361 ---------------TITSGIRLGTPAGTTRGFGAAEFREVGRLILEVFEAL 397 (425)
T ss_dssp ---------------TTCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCccceeccchhheeccCCHHHHHHHHHHHHHHHhcc
Confidence 02478999965444 4999999999999988764
|
| >1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-22 Score=212.03 Aligned_cols=341 Identities=11% Similarity=-0.005 Sum_probs=211.3
Q ss_pred eEEecCCCCC------CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 78 LTYADHTASG------RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 78 ~vyld~~a~g------~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
..|+|+.++. ..++.|.+++.+.+.....++... + ......++++.++++++.+++ +|+|+ +|+++
T Consensus 43 ~~ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~~-~-----~~~~~~~l~~~la~~~~~~~~-~v~~~-~ggte 114 (429)
T 1s0a_A 43 RRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGG-I-----THAPAIELCRKLVAMTPQPLE-CVFLA-DSGSV 114 (429)
T ss_dssp CEEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCSCCCCSS-E-----ECHHHHHHHHHHHHHSCTTCC-EEEEE-SSHHH
T ss_pred CEEEEcCccHhhccCCCCCHHHHHHHHHHHHhcccccccc-c-----CCHHHHHHHHHHHHhCCCCCC-EEEEe-CCHHH
Confidence 3689986553 357889999988876432221111 1 123456788899999997766 89999 56666
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcC-------------ceEEEEecCC-----
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSL-------------AEVVEIGLDD----- 212 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G-------------~~vv~v~~~~----- 212 (609)
+++.++.++.. .. . ..-+|++ .|++....||.... .....+ ..++.++.+.
T Consensus 115 a~~~ai~~~~~-~~----~---~~g~~~~--~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (429)
T 1s0a_A 115 AVEVAMKMALQ-YW----Q---AKGEARQ--RFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDG 184 (429)
T ss_dssp HHHHHHHHHHH-HH----H---HHTCCCC--EEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-C
T ss_pred HHHHHHHHHHH-Hh----c---ccCCCCC--eEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccc
Confidence 77777664310 00 0 0002566 46666655554433 322211 1355555532
Q ss_pred -CCCCCHHHHHHHHhhhccCCCceEEEEecc-cCccccccC----HHHHHHHHHHhCCeEEEecccc-CCcccc--cCCC
Q 038499 213 -DGLLDIEALRSKLELYKDAKRPILGSFSAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVEI--DVRS 283 (609)
Q Consensus 213 -~g~ld~e~L~~al~~~~~~~~~~lv~~s~~-sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~-~~~~~i--d~~~ 283 (609)
.+.+|+++|++++++. .+++++++++.+ +|+||.+.| +++|.++|++||+++|+|++|+ ++.... .+..
T Consensus 185 ~~~~~d~~~l~~~l~~~--~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~ 262 (429)
T 1s0a_A 185 EWDERDMVGFARLMAAH--RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEH 262 (429)
T ss_dssp CCCGGGGHHHHHHHHHH--TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGG
T ss_pred cchHHHHHHHHHHHHhC--CCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhh
Confidence 2468999999999742 135778777777 899998887 9999999999999999999987 332211 1111
Q ss_pred CCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC--hhHH
Q 038499 284 GQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT--PQVI 360 (609)
Q Consensus 284 ~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt--p~i~ 360 (609)
. ....|++++| |+++|+ .++|++++++++ ++.+.+. +.. .....+| .+.+
T Consensus 263 ~-~~~~d~~t~s--K~l~~G~~~iG~~~~~~~~--~~~l~~~---~~~-------------------~~~~~~t~~~n~~ 315 (429)
T 1s0a_A 263 A-EIAPDILCLG--KALTGGTMTLSATLTTREV--AETISNG---EAG-------------------CFMHGPTFMGNPL 315 (429)
T ss_dssp G-TCCCSEEEEC--GGGGTSSSCCEEEEECHHH--HHHHHTS---TTS-------------------SCSCCCTTTTCHH
T ss_pred c-CCCCCEEEec--ccccCCCccceEEEeCHHH--HHHhhcC---CCc-------------------ccccCCCCCCCHH
Confidence 1 1146777554 999876 679999999887 2222111 000 0001122 2333
Q ss_pred HHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC---CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 361 QMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPN---QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 361 ~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~---p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
+.. .+++... +. +.+.++.+++++++.+.|+++ |++....+ ...++++.+.. .
T Consensus 316 ~~~a~~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~----~g~~~~~~~~~-~------------ 373 (429)
T 1s0a_A 316 ACAAANASLAIL--ES---GDWQQQVADIEVQLREQLAPARDAEMVADVRV----LGAIGVVETTH-P------------ 373 (429)
T ss_dssp HHHHHHHHHHHH--HT---CHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE----ETTEEEEEESS-C------------
T ss_pred HHHHHHHHHHHH--Hh---CCHHHHHHHHHHHHHHHHHHHhcCCCEEEEEE----eeEEEEEEECC-c------------
Confidence 322 3333332 22 245677778888888888764 56543322 22345554432 1
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTL 515 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll 515 (609)
.+...+.+.|.+ .||.+++. .+++||++++.+|++|+++++
T Consensus 374 ----~~~~~l~~~l~~-~Gi~v~~~----------------------------------~~~iRis~~~~~t~e~i~~~~ 414 (429)
T 1s0a_A 374 ----VNMAALQKFFVE-QGVWIRPF----------------------------------GKLIYLMPPYIILPQQLQRLT 414 (429)
T ss_dssp ----BCHHHHHHHHHH-TTEECCCB----------------------------------TTEEEECCCTTCCHHHHHHHH
T ss_pred ----ccHHHHHHHHHH-CCCEEecc----------------------------------CCEEEEECCCCCCHHHHHHHH
Confidence 356778888865 59998731 268999999999999999999
Q ss_pred HHHHHHHHhcc
Q 038499 516 EALEFIAIYGQ 526 (609)
Q Consensus 516 ~al~~v~~~~~ 526 (609)
++|+++++..+
T Consensus 415 ~~l~~~~~~~~ 425 (429)
T 1s0a_A 415 AAVNRAVQDET 425 (429)
T ss_dssp HHHHHHTSSGG
T ss_pred HHHHHHHHhhh
Confidence 99999876544
|
| >1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3 | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-23 Score=225.50 Aligned_cols=307 Identities=14% Similarity=0.129 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH--
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW-- 198 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-- 198 (609)
..++++++++++++|.+ +++++++|++ ++..++. + +++|| .|+++...|+++...|
T Consensus 133 ~~~~~l~~~la~~~g~~---~~i~~~sGt~-al~~~l~-~---------------~~~Gd--~Vi~~~~~y~~~~~~~~~ 190 (464)
T 1ibj_A 133 PTRDALESLLAKLDKAD---RAFCFTSGMA-ALSAVTH-L---------------IKNGE--EIVAGDDVYGGSDRLLSQ 190 (464)
T ss_dssp HHHHHHHHHHHHHHTCS---EEEEESSHHH-HHHHHHT-T---------------SCTTC--EEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCHHH-HHHHHHH-H---------------hCCCC--EEEEECCCchhHHHHHHH
Confidence 36888999999999975 4566657865 6776654 2 47888 6889999999887654
Q ss_pred --HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 199 --RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 199 --~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
+..|++++.++.+ |+++|+++++ ++++++++++++||||.+.|+++|+++|++||+++|+|++++.+.
T Consensus 191 ~~~~~G~~v~~v~~~-----d~~~l~~~i~-----~~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~ 260 (464)
T 1ibj_A 191 VVPRSGVVVKRVNTT-----KLDEVAAAIG-----PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPV 260 (464)
T ss_dssp TSGGGTCEEEEECTT-----SHHHHHHHCC-----SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTT
T ss_pred HHHHcCCEEEEeCCC-----CHHHHHHHhc-----cCceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccc
Confidence 4569999999875 8999999997 689999999999999999999999999999999999999998765
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCCCc--EEEEEec-hhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPGSP--GILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~g~--G~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
....+. . +.|+++.|+||+++||.|+ |++++++ ++ .+.+.+.. ...
T Consensus 261 ~~~~~~-~---~~div~~S~sK~~~g~~Gl~~G~l~~~~~~l--~~~l~~~~-------------------------~~~ 309 (464)
T 1ibj_A 261 LSRPLE-L---GADIVMHSATKFIAGHSDVMAGVLAVKGEKL--AKEVYFLQ-------------------------NSE 309 (464)
T ss_dssp TCCGGG-T---TCSEEEEETTTTTTCSSCCCCEEEEECSHHH--HHHHHHHH-------------------------HHT
T ss_pred cCChhh-c---CCEEEEECCcccccCCCCCcEEEEEEChHHH--HHHHHHHH-------------------------Hhc
Confidence 421121 2 6899999999999988765 9999986 55 22221110 000
Q ss_pred CCC-hhHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHH----------HHhCCCCceEEeCCCCCCCcceEEEEecc
Q 038499 354 GGT-PQVIQMI-RAALAFWVKEYIGHEVIKKQEETYIERAL----------ERLLPNQNIKILGNTSTKRQAILSFNIHS 421 (609)
Q Consensus 354 ~gt-p~i~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~~~----------~~L~~~p~i~v~~~~~~~r~~~~~f~~~~ 421 (609)
.++ ..+.+.+ .+++.-. ...++...+....+.+++. +.|.++|++++..+......++++|.+..
T Consensus 310 g~~~~~~~~~a~~~al~~~---~~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~ 386 (464)
T 1ibj_A 310 GSGLAPFDCWLCLRGIKTM---ALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGS 386 (464)
T ss_dssp TCBCCHHHHHHHHHHHTTH---HHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSC
T ss_pred CCCCCHHHHHHHHhchhhH---HHHHHHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECC
Confidence 111 1222211 1111100 0001212222223333333 24455566666655322245677877632
Q ss_pred CCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCc----ccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 422 STINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGC----ACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~----~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
. -....+.+.|. .+||.++.|. .|. |......++..+. ....|+.+++
T Consensus 387 --~---------------~~~~~~~~~L~-~~gi~v~~G~~~sl~~~-p~~~~~~~~~~~~---------~~~~g~~~~~ 438 (464)
T 1ibj_A 387 --V---------------ALSKHLVETTK-YFSIAVSFGSVKSLISM-PCFMSHASIPAEV---------REARGLTEDL 438 (464)
T ss_dssp --H---------------HHHHHHHHHCS-SSEECSCCCSSSCEEEC-TTTTTTCSCCSSS---------SSSSSCCTTC
T ss_pred --H---------------HHHHHHHHhcC-cceEeecCCCCceeeec-ccccccccCCHHH---------HHhcCCCcCe
Confidence 1 01335667664 4799999886 343 2110000000000 0011233689
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 498 TRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
+|||++. ||++.+++.|+++++.+
T Consensus 439 iRlsvg~----edi~~li~~L~~al~~~ 462 (464)
T 1ibj_A 439 VRISAGI----EDVDDLISDLDIAFKTF 462 (464)
T ss_dssp EEEECCS----SCHHHHHHHHHHHHHSC
T ss_pred EEEEeCC----CCHHHHHHHHHHHHhhc
Confidence 9999985 89999999999988654
|
| >3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-23 Score=220.00 Aligned_cols=304 Identities=13% Similarity=0.045 Sum_probs=199.9
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHH--HHHHHHhcccchhhHHHHHHhhhcC---C-------CceEEEECCCC
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAI--KRLQEVMGIAVPSILREKLIKCLRD---E-------ERWVVFVGPHE 190 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal--~~l~~~l~~~~~~~~~~~~~~~l~~---g-------d~~~Vlv~~~~ 190 (609)
..++|+.++++++++++ +|++| +|+++++ ..++..+. ++ | |...|++..+.
T Consensus 78 ~~~lr~~ia~~~~~~~~-~i~~t-~G~~~al~l~~~~~~l~---------------~~~~~g~~~~~~~d~~~Vl~~~p~ 140 (422)
T 3d6k_A 78 IADIRELWAEALGLPAD-LVVAQ-DGSSLNIMFDLISWSYT---------------WGNNDSSRPWSAEEKVKWLCPVPG 140 (422)
T ss_dssp CHHHHHHHHHHHTCCGG-GEEEC-SSCHHHHHHHHHHHHHH---------------HCCTTCSSCGGGSSCCEEEEEESC
T ss_pred CHHHHHHHHHHhCCChh-HEEEe-cchHHHHHHHHHHHHhc---------------CcccccccccccCCCCEEEEeCCc
Confidence 56789999999999877 89998 7777765 66666653 23 2 22268999999
Q ss_pred ccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEE-EecccCccccccCHH---HHHHHHH-HhCCe
Q 038499 191 HHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGS-FSACSNVTGIYSDTR---SIARLLH-QYGGF 265 (609)
Q Consensus 191 h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~-~s~~sn~TG~~~dl~---~I~~la~-~~g~~ 265 (609)
|+.+...++..|++++.++++++| +|+++|+++++. .++++++ +++++||||.+.|.+ +|+++|+ +||++
T Consensus 141 y~~~~~~~~~~g~~~~~v~~~~~g-~d~~~l~~~l~~----~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~ 215 (422)
T 3d6k_A 141 YDRHFTITEHFGFEMINVPMTDEG-PDMGVVRELVKD----PQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFR 215 (422)
T ss_dssp CHHHHHHHHHHTCEEEEEEEETTE-ECHHHHHHHHTS----TTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCE
T ss_pred cHHHHHHHHHcCCEEEecCCCCCC-CCHHHHHHHHhc----CCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCE
Confidence 999998899999999999998766 999999999973 3688777 799999999999976 7788888 89999
Q ss_pred EEEeccccC---Cccc---ccCCC----CCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEee
Q 038499 266 ACFDFAASG---PYVE---IDVRS----GQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYV 334 (609)
Q Consensus 266 vivD~A~~~---~~~~---id~~~----~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~ 334 (609)
+|+|++++. .... ..+.. ....+.++++.|++|+ ++| .++|++++++++ ++.+...
T Consensus 216 li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~-~~~GlriG~~~~~~~l--~~~l~~~---------- 282 (422)
T 3d6k_A 216 IVWDNAYALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKI-THAGSGVSFFASSKEN--IEWYASH---------- 282 (422)
T ss_dssp EEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTT-SCTTSSCEEEECCHHH--HHHHHHH----------
T ss_pred EEEECCccccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhh-cCcccceEEEEeCHHH--HHHHHHH----------
Confidence 999999863 1110 11100 0112557889999999 445 358999999887 2222110
Q ss_pred cccccccccccccccccccCCChhHHHHHHHHHHHHHHH-h---cCHHHHHHHHHHHHHHHHHHh----CCCCceEEeCC
Q 038499 335 NGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-Y---IGHEVIKKQEETYIERALERL----LPNQNIKILGN 406 (609)
Q Consensus 335 ~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-~---~g~~~i~~~~~~l~~~~~~~L----~~~p~i~v~~~ 406 (609)
......+++.+.+.+ +.+++ .+ . ...+.++++.++.++++.+.| ..++++.+..+
T Consensus 283 --------------~~~~~~~~~~~~q~a--~~~~l-~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p 345 (422)
T 3d6k_A 283 --------------ANVRGIGPNKLNQLA--HAQFF-GDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEYGVAKWTSP 345 (422)
T ss_dssp --------------HHHHCSCCCHHHHHH--HHHHH-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCEEECCC
T ss_pred --------------HHhhcCCCCHHHHHH--HHHHH-hCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCceEEeCC
Confidence 111112333333322 12222 11 0 113334444444555555544 33444676554
Q ss_pred CCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccC-cccCChhhhhhcCCChhHHHHHHHH
Q 038499 407 TSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGG-CACAGPYGHHLLDLDEAQSYQIRSA 485 (609)
Q Consensus 407 ~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G-~~ca~p~~~~ll~i~~~~~~~~~~~ 485 (609)
..+++.+...+ . .+..++.+.|. +.||.+++| ..|... ...
T Consensus 346 ----~~g~~~~~~~~-~----------------~~~~~~~~~l~-~~gV~v~~~g~~f~~~-~~~--------------- 387 (422)
T 3d6k_A 346 ----TGGYFISVDVV-P----------------GTASRVVELAK-EAGIALTGAGSSFPLH-NDP--------------- 387 (422)
T ss_dssp ----SBSSCEEEEES-T----------------TCHHHHHHHHH-HTTEECCCTTTTSGGG-CCT---------------
T ss_pred ----CcceEEEEECC-C----------------CCHHHHHHHHH-HCCeEEEcCccccCCC-CCC---------------
Confidence 23444444333 1 13567777775 469999984 434310 000
Q ss_pred HhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 486 IQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 486 ~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++|||++. ++++++++++++|+++++..
T Consensus 388 --------~~~~iRis~~~-~~~e~i~~~~~~l~~~l~~~ 418 (422)
T 3d6k_A 388 --------NNENIRLAPSL-PPVAELEVAMDGFATCVLMA 418 (422)
T ss_dssp --------TSCEEEECCSS-SCHHHHHHHHHHHHHHHHHH
T ss_pred --------CCCeEEEecCC-CCHHHHHHHHHHHHHHHHHH
Confidence 14899999987 89999999999999987653
|
| >3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=5e-22 Score=213.93 Aligned_cols=324 Identities=19% Similarity=0.146 Sum_probs=198.6
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 116 GQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 116 ~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
++.......++++++++++|.+. .+ ++++|+ +++..++..+ +++|| .|+++...|++..
T Consensus 77 ~r~~~p~~~~le~~lA~l~g~~~--~v-~~~sG~-~Ai~~al~al---------------~~~Gd--~Vi~~~~~y~~~~ 135 (430)
T 3ri6_A 77 SRSSNPTVEDLEQRLKNLTGALG--VL-ALGSGM-AAISTAILTL---------------ARAGD--SVVTTDRLFGHTL 135 (430)
T ss_dssp ---CCHHHHHHHHHHHHHHTCSE--EE-EESCHH-HHHHHHHHHH---------------CCTTC--EEEEETTCCHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHCCCc--EE-EECCHH-HHHHHHHHHH---------------hCCCC--EEEEcCCCchhHH
Confidence 33334567889999999999853 34 445887 6777776665 47898 7999999999888
Q ss_pred HH----HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecc
Q 038499 196 LS----WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 196 ~~----~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A 271 (609)
.. ++..|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|++||+++|+|++
T Consensus 136 ~~~~~~~~~~G~~~~~v~~~-----d~~~l~~ai~-----~~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a 205 (430)
T 3ri6_A 136 SLFQKTLPSFGIEVRFVDVM-----DSLAVEHACD-----ETTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTT 205 (430)
T ss_dssp HHHHTHHHHTTCEEEEECTT-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECT
T ss_pred HHHHHHHHHcCCEEEEeCCC-----CHHHHHHhhC-----CCCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECC
Confidence 74 45689999999876 8999999998 6899999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCCCCCccEEEEcCCCCCCCCC--CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccc-
Q 038499 272 ASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG--SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI- 348 (609)
Q Consensus 272 ~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~--g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~- 348 (609)
++.+.. .+... .++|+++.|++|++||++ -.|+++.+.+.. .... ..... ....+ ....+....
T Consensus 206 ~~~~~~-~~~~~---~g~div~~S~sK~l~g~g~~~gG~vv~~~~~~-~~~~-~~~~~-----l~~~~--g~~~~i~~~~ 272 (430)
T 3ri6_A 206 MTPPYL-LEAKR---LGVDIEVLSSTKFISGGGTSVGGVLIDHGLFE-WKSL-PSLAP-----YYAKA--GPMAFLYKAR 272 (430)
T ss_dssp TSCTTT-CCGGG---GTCSEEEEECCCEEETTEEECCEEEEECSCSC-GGGS-TTTHH-----HHHHH--GGGHHHHHHH
T ss_pred Cccccc-CChHH---cCCEEEEECCcccccCCCCceEEEEEECChHH-hhhc-cchhh-----hhhhh--chhhHHHHHH
Confidence 987765 22222 278999999999999873 246666543320 0000 00000 00000 000000000
Q ss_pred --cccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC--CC----------Ccc
Q 038499 349 --EERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS--TK----------RQA 413 (609)
Q Consensus 349 --~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~--~~----------r~~ 413 (609)
..+...++.+... +.+... .........++..+++.++.+.|++.|+++ |..|.- .+ ..+
T Consensus 273 ~~~~~~~g~~~~~~~---a~l~l~--~l~~l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg 347 (430)
T 3ri6_A 273 KEVFQNLGPSLSPHN---AYLQSL--GLETMALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAG 347 (430)
T ss_dssp HTHHHHHCCCCCHHH---HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCC
T ss_pred HHHHHhcCCCCCHHH---HHHHHh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCc
Confidence 0011112221111 111111 111233445666778889999999999887 544421 11 145
Q ss_pred -eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCC---h--hhhhhcCCChhHHHHHHHHHh
Q 038499 414 -ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAG---P--YGHHLLDLDEAQSYQIRSAIQ 487 (609)
Q Consensus 414 -~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~---p--~~~~ll~i~~~~~~~~~~~~~ 487 (609)
+++|.+.. . .....+.+.| +.+++.+..|..++- | ..|..+ ..+.
T Consensus 348 ~~lsf~l~~-~----------------~~~~~~~~~l-~~~~~~~s~G~~~sli~~p~~~~h~~~--~~~~--------- 398 (430)
T 3ri6_A 348 SILTFELES-K----------------EASYRFMDAL-KLIRRATNIHDNKSLILSPYHVIYALN--SHEE--------- 398 (430)
T ss_dssp SEEEEECSS-H----------------HHHHHHHHHC-SSSEECSCCSCSSCEEECTGGGC-------------------
T ss_pred eEEEEEECC-H----------------HHHHHHHHhC-CcceecCCCCCCCceeeCCcccccccC--CHHH---------
Confidence 88888764 1 1345566666 456777777765541 2 222211 1110
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 488 KGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 488 ~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.-..|+.+++||||++.- +++.+++.|+..
T Consensus 399 ~~~~g~~~~liRlsvG~E----~~~dl~~dl~~a 428 (430)
T 3ri6_A 399 RLKLEISPAMMRLSVGIE----EIEDLKEDILQA 428 (430)
T ss_dssp -CGGGSCTTEEEEECCSS----CHHHHHHHHHHH
T ss_pred HHhcCCCCCeEEEEeccC----CHHHHHHHHHHh
Confidence 001355689999999864 444555555443
|
| >2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=7.9e-22 Score=210.03 Aligned_cols=325 Identities=14% Similarity=0.106 Sum_probs=206.2
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
.|+|.+++ |..++.+.+++.+.+... .+.... + ......++++.+++++|. ++++|+++ ++++
T Consensus 41 ~~ld~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~~~~-~-----~~~~~~~l~~~la~~~g~---~~v~~~~g-g~~a 109 (397)
T 2ord_A 41 AYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKL-IHCSNL-F-----WNRPQMELAELLSKNTFG---GKVFFANT-GTEA 109 (397)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHHHC-SCCCTT-S-----EEHHHHHHHHHHHHTTTS---CEEEEESS-HHHH
T ss_pred EEEECCccccccccCCCCHHHHHHHHHHHHhc-ccCccc-c-----CCHHHHHHHHHHHHhcCC---CeEEEeCC-HHHH
Confidence 57887543 556788999998877542 222111 1 235678899999999984 37999954 4556
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCce------------EEEEecCCCCCCCHHH
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAE------------VVEIGLDDDGLLDIEA 220 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~------------vv~v~~~~~g~ld~e~ 220 (609)
+..++.++.... .. -.+|+..+|+..+..|.+....++..|++ ++.++.+ |+++
T Consensus 110 ~~~al~~~~~~~----~~-----~~~~~~~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~ 175 (397)
T 2ord_A 110 NEAAIKIARKYG----KK-----KSEKKYRILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFN-----NVED 175 (397)
T ss_dssp HHHHHHHHHHHH----HH-----HCTTCCEEEEEBTCCCCSSHHHHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHH
T ss_pred HHHHHHHHHHHh----hc-----CCCCCceEEEEcCCcCCCchhhhhccCChhhccccCCCCCCeeEecCC-----CHHH
Confidence 777666542000 00 01442214444444445555566667765 7777753 8999
Q ss_pred HHHHHhhhccCCCceEEEEecccCcccc-c---cCHHHHHHHHHHhCCeEEEeccccC-Ccc--cccCCCCCCCCccEEE
Q 038499 221 LRSKLELYKDAKRPILGSFSACSNVTGI-Y---SDTRSIARLLHQYGGFACFDFAASG-PYV--EIDVRSGQTDGYDAIF 293 (609)
Q Consensus 221 L~~al~~~~~~~~~~lv~~s~~sn~TG~-~---~dl~~I~~la~~~g~~vivD~A~~~-~~~--~id~~~~~~~~~D~v~ 293 (609)
|+++++ ++++++++++++||||. + .++++|.++|++||+++|+|++++. +.. ...+.... ...|++
T Consensus 176 l~~~l~-----~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~-~~~d~~- 248 (397)
T 2ord_A 176 LRRKMS-----EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYG-VVPDVL- 248 (397)
T ss_dssp HHHHCC-----TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHT-CCCSEE-
T ss_pred HHHHhh-----cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccCccchhhhhhC-CCCCee-
Confidence 999997 58999999999999999 3 5688999999999999999999872 111 11111111 136876
Q ss_pred EcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHH-HHHHHHHHHHHH
Q 038499 294 LSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI-QMIRAALAFWVK 372 (609)
Q Consensus 294 ~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~-~~~~aal~~~~~ 372 (609)
+++|+++++.++|++++++++ + .+.+...+ ...+.+.+. ..+.+++...
T Consensus 249 -s~sK~~~~G~r~G~~~~~~~~--~-~l~~~~~~------------------------~~~~~~~~~~~a~~~~l~~~-- 298 (397)
T 2ord_A 249 -TTAKGLGGGVPIGAVIVNERA--N-VLEPGDHG------------------------TTFGGNPLACRAGVTVIKEL-- 298 (397)
T ss_dssp -EECGGGGTTSCCEEEEECSTT--C-CCCTTSSC------------------------CSSTTCHHHHHHHHHHHHHH--
T ss_pred -eeccccCCCcCeEEEEEchHh--c-ccCCCCcC------------------------CCCCCCHHHHHHHHHHHHHH--
Confidence 447999966679999999887 4 44321000 001112222 2223333322
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHhCCC----CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHH
Q 038499 373 EYIGHEVIKKQEETYIERALERLLPN----QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATL 448 (609)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~~~~~L~~~----p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 448 (609)
+. +.+.++.+++++++.+.|+++ +.+.... ....++++.+.. . .+...+.+.
T Consensus 299 ~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~~~~~~~~~-~----------------~~~~~l~~~ 354 (397)
T 2ord_A 299 TK---EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVR----GMGLMIGIQFRE-E----------------VSNREVATK 354 (397)
T ss_dssp TS---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE----EETTEEEEEECT-T----------------SCHHHHHHH
T ss_pred Hh---CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEE----EEeEEEEEEECC-h----------------HHHHHHHHH
Confidence 21 456677777788887777653 3222111 123566665543 1 246788888
Q ss_pred HhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 449 LNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 449 L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
|.+ .||.+++|. ++++||++++.++++|+++++++|+++++
T Consensus 355 l~~-~gi~v~~~~---------------------------------~~~iRis~~~~~~~e~i~~~~~~l~~~l~ 395 (397)
T 2ord_A 355 CFE-NKLLVVPAG---------------------------------NNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395 (397)
T ss_dssp HHH-TTEECEEET---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHH-CCCEEccCC---------------------------------CCEEEEECCcCCCHHHHHHHHHHHHHHHh
Confidence 876 699988541 37899999989999999999999998865
|
| >3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=222.18 Aligned_cols=366 Identities=12% Similarity=0.061 Sum_probs=219.9
Q ss_pred ChHHHHHHHHHhhcC-CccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--C--CCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 89 SLRYIENYIINNVLP-FYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--G--QEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~-~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~--~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
.++.+.+++.+.+.. .|..+. .+..++.+.+.+.+++..+. . +.++|++| +|+++++..++..+...
T Consensus 116 ~~~~~v~a~~~~~~~~~y~~~~-------~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t-~G~t~al~~~~~~l~~~ 187 (533)
T 3f6t_A 116 NRDKVVAEWVNGAVANNYPVPD-------RCLVNTEKIINYFLQELSYKDANLAEQTDLFPT-EGGTAAIVYAFHSLAEN 187 (533)
T ss_dssp CHHHHHHHHHHHHHTCSCCSSS-------SCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEE-EHHHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHhCCCCCCc-------ccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEE-CCHHHHHHHHHHHhhhh
Confidence 355666666565542 121111 12234455555555444232 2 22389998 89999999988763100
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC----CCCCCCHHHHHHHHhhhccCCCceEEEE
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD----DDGLLDIEALRSKLELYKDAKRPILGSF 239 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~----~~g~ld~e~L~~al~~~~~~~~~~lv~~ 239 (609)
..+++|| .|+++.++|+++...++..|++++.++++ .++.+|+++|+++++ ++++++++
T Consensus 188 ----------~l~~~gd--~Viv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~-----~~~k~v~l 250 (533)
T 3f6t_A 188 ----------HLLKKGD--KIAINEPIFTPYLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKD-----PSIKALIV 250 (533)
T ss_dssp ----------TSSCTTC--EEEEESSCCHHHHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSC-----TTEEEEEE
T ss_pred ----------hccCCcC--EEEEcCCCcHHHHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhC-----CCCeEEEE
Confidence 0147888 79999999999888888889999999885 357889999999987 68999999
Q ss_pred ecccCccccccCHH---HHHHHHH-HhCCeEEEeccccCCcc-cccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEec
Q 038499 240 SACSNVTGIYSDTR---SIARLLH-QYGGFACFDFAASGPYV-EIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTK 313 (609)
Q Consensus 240 s~~sn~TG~~~dl~---~I~~la~-~~g~~vivD~A~~~~~~-~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~ 313 (609)
++++||||.+.+.+ +|+++|+ +||+++|+|++++.... ...+... ..+.++++.|+||.+|.|+ .+|++++++
T Consensus 251 ~~p~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~-~~~~~i~~~S~SK~~g~~G~RiG~l~~~~ 329 (533)
T 3f6t_A 251 VNPTNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSV-VPYNTMLVYSYSKLFGCTGWRLGVIALNE 329 (533)
T ss_dssp ESSCTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHH-SGGGEEEEEESHHHHTCGGGCEEEEEEES
T ss_pred eCCCCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhc-CCCCEEEEecCcccCCCcccceEEEEECc
Confidence 99999999998876 7888888 68999999999763221 1111111 1245689999999998332 389999998
Q ss_pred h-----hhccCCCCCCccCCCceEeec-cccccccccc-------ccccccccCCChhHHHHHHH--HHHHHHH------
Q 038499 314 A-----LYQLGSFPPSTCGGGTVNYVN-GFNEKDTLYL-------EDIEERESGGTPQVIQMIRA--ALAFWVK------ 372 (609)
Q Consensus 314 ~-----~~~l~~~~p~~~ggg~v~~~~-~~~~~~~~~~-------~~~~~r~~~gtp~i~~~~~a--al~~~~~------ 372 (609)
+ + +..+++.....-...|.+ ...+....+. .........+++...+.+.+ ++..+..
T Consensus 330 ~~~~~~l--i~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~ 407 (533)
T 3f6t_A 330 KNVFDDN--IAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGS 407 (533)
T ss_dssp SCHHHHH--HHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGT
T ss_pred HHHHHHH--HHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccc
Confidence 7 4 223211000000000000 0000000000 00111122333334443322 2222210
Q ss_pred HhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC--------CCChHH
Q 038499 373 EYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK--------PLHGPF 444 (609)
Q Consensus 373 ~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~--------~l~~~~ 444 (609)
.....+.++++.++.++++.+.|. + ++.+.. +..+++.+.-.+ .... ...+. ..+..+
T Consensus 408 ~~~~~~~~~~~~~~r~~~l~~~L~-~-~~~~~~----~~~g~~~~~~l~-~~~~-------~~~g~~~~~~~~~~~~~~~ 473 (533)
T 3f6t_A 408 DDPYIDIARKLVSERYDQLHDAMQ-A-PKDETD----TNTHYYSLIDIY-RLAE-------KIYGKEFRDYLTNNFEQVD 473 (533)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHT-C-CCCCST----TBCCSEEEEEHH-HHHH-------HHHCHHHHHHHHHHCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHhcC-C-CccccC----CCceEEEEEehH-hhhh-------hccchHHHHHhhccCCHHH
Confidence 112345677788888889999996 5 444333 244555554332 1000 00000 013446
Q ss_pred HHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 445 VATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 445 v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
++..|.++.||.+.+|..|..+ ++++|||+.. .++++++.++++|.+++++
T Consensus 474 ~~~~ll~~~GV~v~pg~~f~~~----------------------------~~~iRls~a~-~~~e~i~~~i~~L~~~l~~ 524 (533)
T 3f6t_A 474 FLLKLAEKNGVVLVDGVGFGAK----------------------------PGELRVSQAN-LPTEDYALIGKQVLELLKE 524 (533)
T ss_dssp HHHHHHHHTTSSSCTTEEECSS----------------------------TTEEEEESSS-SCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCEEEeCCcccCCC----------------------------CCEEEEEEee-CCHHHHHHHHHHHHHHHHH
Confidence 6666666789999999888732 4899999964 5799999999999998876
Q ss_pred c
Q 038499 525 G 525 (609)
Q Consensus 525 ~ 525 (609)
.
T Consensus 525 ~ 525 (533)
T 3f6t_A 525 Y 525 (533)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 | Back alignment and structure |
|---|
Probab=99.89 E-value=7.1e-23 Score=222.94 Aligned_cols=362 Identities=14% Similarity=0.091 Sum_probs=211.5
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
..|+|+.+..+. +.|.+++.+.+.. +. . .+.. .....++++++++++|. ++|+||++| ++++..++
T Consensus 43 ~~ylD~~~~~~~-~~v~~a~~~~~~~--~~--~-~y~~----~~~~~~l~~~la~~~~~---~~v~~t~gg-t~A~~~al 108 (467)
T 1ax4_A 43 AVYIDLLTDSGT-NAMSDHQWAAMIT--GD--E-AYAG----SRNYYDLKDKAKELFNY---DYIIPAHQG-RGAENILF 108 (467)
T ss_dssp GCSEECSCSSSC-CCEEHHHHHHHHT--CC--C-CSSS----CHHHHHHHHHHHHHHCC---CEEEEESSH-HHHHHHHH
T ss_pred ceeeecccCcCC-HHHHHHHHHHHhh--cc--c-cccc----CccHHHHHHHHHHHcCC---CcEEEcCCc-HHHHHHHH
Confidence 359999876655 5555655555431 11 1 1111 12356789999999987 379999555 55677776
Q ss_pred HHhcccchhhHHHHHHhhhc----CCCc-eEEEECCCCccchHHHHHHcCceEEEEecC----------CCCCCCHHHHH
Q 038499 158 EVMGIAVPSILREKLIKCLR----DEER-WVVFVGPHEHHSNLLSWRQSLAEVVEIGLD----------DDGLLDIEALR 222 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~----~gd~-~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~----------~~g~ld~e~L~ 222 (609)
.++. . +||. ..|+++.+.|.++...+...|++++.++.. .++.+|+++|+
T Consensus 109 ~~~~---------------~~~~~~Gd~~~~viv~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 173 (467)
T 1ax4_A 109 PVLL---------------KYKQKEGKAKNPVFISNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLK 173 (467)
T ss_dssp HHHH---------------HHHHHTTCCSSCEEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHH
T ss_pred HHHH---------------HhhccCCCccceEEEeccccchhhHHHhccCCceecccccccccccccCCcccccCHHHHH
Confidence 6652 3 7872 116776333345566777889998877542 14578999999
Q ss_pred HHHhhhccCCCceEEEEecccCcc-ccccC---HHHHHHHHHHhCCeEEEeccccC-----------CcccccCCCCC--
Q 038499 223 SKLELYKDAKRPILGSFSACSNVT-GIYSD---TRSIARLLHQYGGFACFDFAASG-----------PYVEIDVRSGQ-- 285 (609)
Q Consensus 223 ~al~~~~~~~~~~lv~~s~~sn~T-G~~~d---l~~I~~la~~~g~~vivD~A~~~-----------~~~~id~~~~~-- 285 (609)
++|++.. .+++++|++++++|+| |.+.+ +++|+++|++||+++|+|++++. ++..+++..+.
T Consensus 174 ~~i~~~~-~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 252 (467)
T 1ax4_A 174 ENIAQHG-ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFD 252 (467)
T ss_dssp HHHHHHC-GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHH
T ss_pred HHHHhcC-CCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhh
Confidence 9998421 1268999999999999 88765 57899999999999999998654 23222221110
Q ss_pred -CCCccEEEEcCCCCCCCCCCcEEEEEe-c-hhhccCCCCCCcc--CCCceEeecccccccccccccccccccCCChhHH
Q 038499 286 -TDGYDAIFLSTHKFLGGPGSPGILLMT-K-ALYQLGSFPPSTC--GGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI 360 (609)
Q Consensus 286 -~~~~D~v~~S~hK~lggp~g~G~L~~~-~-~~~~l~~~~p~~~--ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~ 360 (609)
...+|++++|+||++|.|.| |+++.+ + ++. +.+..... ++. ...++.+..
T Consensus 253 ~~~~~d~~~~s~sK~~g~~~G-g~~~~~d~~~l~--~~~~~~~~~~~~~----------------------~~~~~~~~~ 307 (467)
T 1ax4_A 253 MYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIF--TLARQRCVPMEGF----------------------VTYGGLAGR 307 (467)
T ss_dssp HGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHH--HHHHHHHHHHTCS----------------------TTTTTCCHH
T ss_pred hccccceEEEeccccCCCCcc-eEEEeCCHHHHH--HHHHhhccccccc----------------------cccCCccch
Confidence 01468999999999987645 777777 5 552 22111100 110 012222322
Q ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCC
Q 038499 361 QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPL 440 (609)
Q Consensus 361 ~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l 440 (609)
.....+..+ ......+.+ ++..++++++.+.|.+ +++.+..+. +...+++.+.. -. .+......
T Consensus 308 ~~~a~~~~l--~~~~~~~~~-~~~~~~~~~l~~~L~~-~~~~~~~~~---~~~~~~~~~~~-~~--------~~~~~~~~ 371 (467)
T 1ax4_A 308 DMAAMVQGL--EEGTEEEYL-HYRIGQVKYLGDRLRE-AGIPIQYPT---GGHAVFVDCKK-LV--------PQIPGDQF 371 (467)
T ss_dssp HHHHHHHHH--HHTTCHHHH-HHHHHHHHHHHHHHHH-TTCCBCSSC---CSSEEEEESTT-TC--------TTSCGGGC
T ss_pred HHHHHHHHH--HHhhhhhHH-HHHHHHHHHHHHHHHh-CCCCcccCC---CceEEEEehhh-hc--------cccccCCC
Confidence 222111111 122221222 3334566778888866 467665442 33444444110 00 00000013
Q ss_pred ChHHHHHHHhhhcCcEecc-CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCC-CCCHHHHHHHHHHH
Q 038499 441 HGPFVATLLNDLFGIQARG-GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPY-YMSNEEFEFTLEAL 518 (609)
Q Consensus 441 ~~~~v~~~L~~~~GI~v~~-G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~-~~t~eeid~ll~al 518 (609)
+...+++.|.++.||.+++ |..|.+.... .+.+. -...+++||+++. .+|++|+++++++|
T Consensus 372 ~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~--~g~~~---------------~~~~~~iRls~~~~~~t~e~i~~~~~~l 434 (467)
T 1ax4_A 372 PAQAVINALYLESGVRAVEIGSFLLGRDPA--TGEQK---------------HADMEFMRLTIARRVYTNDHMDYIADAL 434 (467)
T ss_dssp HHHHHHHHHHHHHCEECEEESHHHHCBCTT--TCSBC---------------CCSCCEEEEECCTTSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCceeeecCccccccccc--ccccc---------------ccccceEEEecccccCCHHHHHHHHHHH
Confidence 4567888884456999987 5443211000 00000 0013799999984 48999999999999
Q ss_pred HHHHHhccc
Q 038499 519 EFIAIYGQR 527 (609)
Q Consensus 519 ~~v~~~~~~ 527 (609)
+++++....
T Consensus 435 ~~~~~~~~~ 443 (467)
T 1ax4_A 435 IGLKEKFAT 443 (467)
T ss_dssp HTTHHHHTT
T ss_pred HHHHHhhhc
Confidence 998877543
|
| >3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula} | Back alignment and structure |
|---|
Probab=99.89 E-value=7.7e-22 Score=211.59 Aligned_cols=333 Identities=11% Similarity=-0.028 Sum_probs=210.3
Q ss_pred EecCCCCCCChHHHHHHHHHhhcC-CccCCCCCCchhhHHHHHHHHHHHHHHHHHh----CCCCCCcEEEeCChHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLP-FYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----GGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~-~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g~~~~~~vift~sGttaal~ 154 (609)
|+|+....+.++.+.+++.+.... ... |....+ ..++++.+++++ +.+..++|++| +|+++++.
T Consensus 48 ~~~~~~~~~~~~~v~~a~~~~~~~~~~~------y~~~~g----~~~lr~~ia~~~~~~~~~~~~~~i~~t-~g~~~al~ 116 (418)
T 3rq1_A 48 IHDEEGNLVFLKTVKEEYLSLSDSEHVG------YAPIAG----IPDFLCAAEKECFGNFRPEGHIRSIAT-AGGTGGIH 116 (418)
T ss_dssp CBCTTSCBCCCHHHHHHHHTCCHHHHHS------CCCTTC----CHHHHHHHHHHHHGGGCCSSEEEEEEE-SHHHHHHH
T ss_pred ccCCCCCccccHHHHHHHHHhcccccCC------CCCCCC----hHHHHHHHHHHHhcccCccccccEEEC-CchHHHHH
Confidence 344445567778888887553321 101 111111 334556666654 33222278888 78888999
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC-CCCCCCHHHHHHHHhhhccCCC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD-DDGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~-~~g~ld~e~L~~al~~~~~~~~ 233 (609)
.++..+ +++|| .|+++.+.|+++...++..|++++.++++ +++.+|+++|++++++... ++
T Consensus 117 ~~~~~l---------------~~~gd--~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~d~~~l~~~l~~~~~-~~ 178 (418)
T 3rq1_A 117 HLIHNY---------------TEPGD--EVLTADWYWGAYRVICSDTGRTLVTYSLFDEHNNFNHEAFQNRVNELAA-KQ 178 (418)
T ss_dssp HHHHHH---------------SCTTC--EEEEESSCCTHHHHHHHHTTCEEEEECSBCTTSSBCHHHHHHHHHHHHH-HC
T ss_pred HHHHHh---------------cCCCC--EEEECCCCchhHHHHHHHcCCEEEEEeeeCCCCCcCHHHHHHHHHHhhc-cC
Confidence 888876 47888 69999999999998899999999999985 4568999999999974110 15
Q ss_pred ce-EEEEecc-cCccccccCHHHH---HHHHH------HhCCeEEEeccccCCc-cc---ccC-CCCCCCCcc---EEEE
Q 038499 234 PI-LGSFSAC-SNVTGIYSDTRSI---ARLLH------QYGGFACFDFAASGPY-VE---IDV-RSGQTDGYD---AIFL 294 (609)
Q Consensus 234 ~~-lv~~s~~-sn~TG~~~dl~~I---~~la~------~~g~~vivD~A~~~~~-~~---id~-~~~~~~~~D---~v~~ 294 (609)
++ +++++++ +||||.+.|.+++ +++|+ +||+++|+|+++.... .. ..+ ........| +++.
T Consensus 179 ~~~~vi~~~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 258 (418)
T 3rq1_A 179 TNVVVIFNTPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCY 258 (418)
T ss_dssp SEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEE
T ss_pred CCEEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEE
Confidence 66 8889999 9999999996654 55565 8999999999974321 10 011 100000123 7778
Q ss_pred cCCCCCCCCC-CcEEEEE---echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHH
Q 038499 295 STHKFLGGPG-SPGILLM---TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFW 370 (609)
Q Consensus 295 S~hK~lggp~-g~G~L~~---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~ 370 (609)
|+||.+|.|+ ++|++++ ++++ ++.+..... + ..+....+++..+... +..++
T Consensus 259 S~sK~~~~~G~r~G~~~~~~~~~~~--~~~~~~~~~-----------------~----~~~~~~~~~~~~~~~a-~~~~l 314 (418)
T 3rq1_A 259 SLSKGFTMYGQRVGAMIGISDDEEI--ADEFFEVNK-----------------S----TSRATWSNICRPAMRT-MANIV 314 (418)
T ss_dssp ESTTTTTCCSSCCEEEEEEESSHHH--HHHHHHHHH-----------------H----HHHHHTSSCCHHHHHH-HHHHH
T ss_pred eCCCCCcCcCCcceEEEEEeCCHHH--HHHHHHHHH-----------------H----HHhhccCCCchHHHHH-HHHHh
Confidence 9999998553 5899998 7776 222211000 0 0000011222222211 11111
Q ss_pred HHHh-------cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChH
Q 038499 371 VKEY-------IGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGP 443 (609)
Q Consensus 371 ~~~~-------~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (609)
.+. ...+.+.++.++.++++.+.|+++ ++++..+ ..+++.|.-.. +..
T Consensus 315 -~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~----~~~~~~~~~~~-------------------~~~ 369 (418)
T 3rq1_A 315 -ADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQV-GLPMLPY----RGGFFITIPTD-------------------SAN 369 (418)
T ss_dssp -TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCCCCC----CSSSEEEEECT-------------------THH
T ss_pred -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCCC----CceEEEEcCCC-------------------CHH
Confidence 110 012355667777788888888776 6666544 33555544322 467
Q ss_pred HHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 444 FVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 444 ~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.+++.|. ++||.+++| ++++|||++ ..++++++.++++|+++++
T Consensus 370 ~~~~~l~-~~gi~v~~g----------------------------------~~~iRis~~-~~~~~~i~~~~~~l~~~l~ 413 (418)
T 3rq1_A 370 AICEELK-KEHIYVIAL----------------------------------ANGIRIAAC-GIPKCQMTGLAEKIYNAMK 413 (418)
T ss_dssp HHHHHHH-HTTEECEEC----------------------------------SSEEEEEGG-GSCHHHHTTHHHHHHHHHH
T ss_pred HHHHHHH-hCCEEEecC----------------------------------CCCeEEEEe-cCCHHHHHHHHHHHHHHHH
Confidence 8888885 469999854 268999987 5699999999999999987
Q ss_pred hcc
Q 038499 524 YGQ 526 (609)
Q Consensus 524 ~~~ 526 (609)
+..
T Consensus 414 ~~~ 416 (418)
T 3rq1_A 414 SLG 416 (418)
T ss_dssp HTT
T ss_pred HHh
Confidence 654
|
| >2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.8e-22 Score=212.37 Aligned_cols=185 Identities=18% Similarity=0.119 Sum_probs=134.4
Q ss_pred EEecCCCC---CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 79 TYADHTAS---GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 79 vyld~~a~---g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
+| |++.. .+.++.|.+++. .+.++ ....+++++.+++++|+++.++++++ +|+++++..
T Consensus 30 v~-~~~~~~~~~~~~~~v~~a~~-----~~~~~-----------~~~~~~~~~~~a~~~g~~~~~~~~~~-~ggt~a~~~ 91 (374)
T 2aeu_A 30 LY-DLSGLSGGFLIDEKDKALLN-----TYIGS-----------SYFAEKVNEYGLKHLGGDENDKCVGF-NRTSSAILA 91 (374)
T ss_dssp CE-ECSSCCCCCCCCHHHHHHHT-----STTHH-----------HHHHHHHHHHHHHHHTCCTTEEEEEE-SSHHHHHHH
T ss_pred ee-eecccCCCCCCCHHHHHHHH-----HhcCc-----------hHHHHHHHHHHHHHhCCCCcceEEEE-cChHHHHHH
Confidence 55 66643 467777777774 11111 22345677778899998532378888 455567777
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH---HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL---SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~---~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
++.. + +|| .|+++.++|++... .++..|++++.+ .|+++|+++ + +
T Consensus 92 ~~~~----------------~-~gd--~Vl~~~~~y~~~~~~~~~~~~~g~~~~~v-------~d~~~l~~~-~-----~ 139 (374)
T 2aeu_A 92 TILA----------------L-KPK--KVIHYLPELPGHPSIERSCKIVNAKYFES-------DKVGEILNK-I-----D 139 (374)
T ss_dssp HHHH----------------H-CCS--EEEEECSSSSCCTHHHHHHHHTTCEEEEE-------SCHHHHHTT-C-----C
T ss_pred HHHh----------------C-CCC--EEEEecCCCCccHHHHHHHHHcCcEEEEe-------CCHHHHHhc-C-----C
Confidence 6653 4 677 68888887766443 456779999888 288999887 4 6
Q ss_pred CceE-EEEecccCccc-cccCHHHHHHHHHHhCCeEEEeccccCCcc-cccCC-CCCCCCccEEEEcCCCCCCCCCCcEE
Q 038499 233 RPIL-GSFSACSNVTG-IYSDTRSIARLLHQYGGFACFDFAASGPYV-EIDVR-SGQTDGYDAIFLSTHKFLGGPGSPGI 308 (609)
Q Consensus 233 ~~~l-v~~s~~sn~TG-~~~dl~~I~~la~~~g~~vivD~A~~~~~~-~id~~-~~~~~~~D~v~~S~hK~lggp~g~G~ 308 (609)
++++ +++++++|||| ...|+++|.++|++||+++|+|++++.... +.... .. ..+.|+++.|+||+++|+ +.|+
T Consensus 140 ~~~~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~-~~~~di~~~S~sK~l~g~-~~G~ 217 (374)
T 2aeu_A 140 KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPAL-KLGADLVVTSTDKLMEGP-RGGL 217 (374)
T ss_dssp TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHH-HHTCSEEEEETTSSSSSC-SCEE
T ss_pred CccEEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCcc-ccCCcEEEecCcccccCc-ceEE
Confidence 8999 99999999999 889999999999999999999999765431 11000 11 015699999999999887 5799
Q ss_pred EEEechh
Q 038499 309 LLMTKAL 315 (609)
Q Consensus 309 L~~~~~~ 315 (609)
+++++++
T Consensus 218 ~~~~~~~ 224 (374)
T 2aeu_A 218 LAGKKEL 224 (374)
T ss_dssp EEEEHHH
T ss_pred EEECHHH
Confidence 9999887
|
| >7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-22 Score=215.95 Aligned_cols=330 Identities=14% Similarity=0.112 Sum_probs=209.4
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC------CCCcEEE--eCChHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG------QEDAMIF--CGSGTT 150 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~------~~~~vif--t~sGtt 150 (609)
+|+|+.+..+..+.+.+++.+.... ..+.+.. ...| ..++|+.++++++.. ++ +|++ | +|++
T Consensus 37 ~~~d~~~~~~~~~~v~~a~~~~~~~-~~~~~Y~-~~~g------~~~lr~~ia~~~~~~~~~~~~~~-~i~~v~t-~G~~ 106 (401)
T 7aat_A 37 AYRDDNGKPYVLNCVRKAEAMIAAK-KMDKEYL-PIAG------LADFTRASAELALGENSEAFKSG-RYVTVQG-ISGT 106 (401)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHT-TCCCCCC-CTTC------CHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-EHHH
T ss_pred eEECCCCCEechHHHHHHHHHhccc-ccccCCC-CCCC------CHHHHHHHHHHhcCCCccccccC-ceEEEec-Ccch
Confidence 4778887777777888887765532 1122111 1112 456777788777643 55 7876 7 7888
Q ss_pred HHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC--CCCCCCHHHHHHHHhhh
Q 038499 151 AAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD--DDGLLDIEALRSKLELY 228 (609)
Q Consensus 151 aal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~g~ld~e~L~~al~~~ 228 (609)
++++.++.++. ..+++|| .|+++.+.|+.+...++..|++++.++++ .++.+|++++++.+.+
T Consensus 107 ~al~~~~~~l~------------~~~~~gd--~Vlv~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~- 171 (401)
T 7aat_A 107 GSLRVGANFLQ------------RFFKFSR--DVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISK- 171 (401)
T ss_dssp HHHHHHHHHHH------------HHCTTCC--EEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTT-
T ss_pred HHHHHHHHHHH------------HhccCCC--EEEEcCCCchhHHHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHh-
Confidence 88988776542 0136788 69999999999999999999999999975 3678999999888874
Q ss_pred ccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc-ccc--c---CCCC-CCCCccEEEEcCCC
Q 038499 229 KDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY-VEI--D---VRSG-QTDGYDAIFLSTHK 298 (609)
Q Consensus 229 ~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~-~~i--d---~~~~-~~~~~D~v~~S~hK 298 (609)
..++++++++++++||||.+.+ +++|+++|++||+++++|+++.... ... + +... ......+++.|+||
T Consensus 172 -~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK 250 (401)
T 7aat_A 172 -IPEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAK 250 (401)
T ss_dssp -SCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTT
T ss_pred -CCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCc
Confidence 1257899999999999998876 6788999999999999999966432 111 1 1000 11245688899999
Q ss_pred CCCCCC-CcEEEEEe---chhhc--cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHH--
Q 038499 299 FLGGPG-SPGILLMT---KALYQ--LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFW-- 370 (609)
Q Consensus 299 ~lggp~-g~G~L~~~---~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~-- 370 (609)
.+|.|+ ++|++++. ++... ...+. ........+.+.+.+.+ ++..+.
T Consensus 251 ~~~~~G~RiG~l~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~-~~~~l~~~ 305 (401)
T 7aat_A 251 NMGLYGERAGAFTVICRDAEEAKRVESQLK------------------------ILIRPMYSNPPMNGARI-ASLILNTP 305 (401)
T ss_dssp TSCCGGGCEEEEEEECSSHHHHHHHHHHHH------------------------HHHHHHHSSCCHHHHHH-HHHHHHCH
T ss_pred ccccccCceEEEEEEeCCHHHHHHHHHHHH------------------------HHHHhccCCCChHHHHH-HHHHhCCH
Confidence 998442 38999873 33100 00000 00001112223222221 111110
Q ss_pred -HHH--hcCHHHHHHHHHHHHHHHHHHhCCC---CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHH
Q 038499 371 -VKE--YIGHEVIKKQEETYIERALERLLPN---QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPF 444 (609)
Q Consensus 371 -~~~--~~g~~~i~~~~~~l~~~~~~~L~~~---p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~ 444 (609)
+.+ ....+.++++.+++++++.+.|+++ +++.+..+ ..+++.|. . ++.+.
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~--~------------------~~~~~ 361 (401)
T 7aat_A 306 ELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD----QIGMFCFT--G------------------LKPEQ 361 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH----CCSSEEEC--C------------------CCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceecC----CcceEEec--C------------------CCHHH
Confidence 000 1124566778888888999988765 23444333 23444443 2 34455
Q ss_pred HHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 445 VATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 445 v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
+ ..|.+++||.+.+ .+|+|++..+++ |+++++++|++++
T Consensus 362 ~-~~ll~~~gi~v~~-------------------------------------~~Ris~~~~~~~-~i~~~~~~l~~~~ 400 (401)
T 7aat_A 362 V-ERLTKEFSIYMTK-------------------------------------DGRISVAGVASS-NVGYLAHAIHQVT 400 (401)
T ss_dssp H-HHHHHHHCEECCT-------------------------------------TCEEEGGGCCTT-THHHHHHHHHHHH
T ss_pred H-HHHHHhCCEeccC-------------------------------------CCeEEeccCChh-hHHHHHHHHHHHh
Confidence 5 4444567998862 259999865554 5999999999875
|
| >1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.9e-21 Score=204.05 Aligned_cols=342 Identities=11% Similarity=0.050 Sum_probs=206.4
Q ss_pred EEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
.|+|..+ .|..++.|.+++.+.+... .+... .+.......++++.|+++++.+..++|+|| +|++++
T Consensus 42 ~~id~~~~~~~~~lg~~~~~v~~a~~~~~~~~-~~~~~-----~~~~~~~~~~l~~~la~~~~~~~~~~v~~~-~g~~~a 114 (426)
T 1sff_A 42 EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKL-SHTCF-----QVLAYEPYLELCEIMNQKVPGDFAKKTLLV-TTGSEA 114 (426)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHTTTC-SCCCT-----TTEECHHHHHHHHHHHHHSSCSSCEEEEEE-SSHHHH
T ss_pred EEEEcccChhhcccCCCCHHHHHHHHHHHHhC-CCccc-----cccCCHHHHHHHHHHHHhCCcccccEEEEe-CchHHH
Confidence 4777652 3456788999998887542 22111 112234577899999999943331489998 666777
Q ss_pred HHHHHH---HhcccchhhHHHHHHhhhcCCCceEEEECCCCcc-chHHHHHHcCce-------------EEEEecCC---
Q 038499 153 IKRLQE---VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHH-SNLLSWRQSLAE-------------VVEIGLDD--- 212 (609)
Q Consensus 153 l~~l~~---~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~-s~~~~~~~~G~~-------------vv~v~~~~--- 212 (609)
+..++. .+ .+++ .|++....|| .....+...|.+ ++.++.+.
T Consensus 115 ~~~~~~~a~~~---------------~~~~---~vi~~~p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~ 176 (426)
T 1sff_A 115 VENAVKIARAA---------------TKRS---GTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLH 176 (426)
T ss_dssp HHHHHHHHHHH---------------HTCC---EEEEETTCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGG
T ss_pred HHHHHHHHHHh---------------hCCC---eEEEECCCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCcccc
Confidence 887766 22 2444 2555545554 444455555543 77787753
Q ss_pred --CCCCCHHHHHHHHhhhccCCCceEEEEec-ccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Cccc--ccCC
Q 038499 213 --DGLLDIEALRSKLELYKDAKRPILGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVE--IDVR 282 (609)
Q Consensus 213 --~g~ld~e~L~~al~~~~~~~~~~lv~~s~-~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~--id~~ 282 (609)
++.+|+++|++++++....+++++++++. ++| ||.+.+ +++|.++|++||+++|+|++++. +... ..+.
T Consensus 177 ~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~n-tG~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~ 255 (426)
T 1sff_A 177 GISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGE-GGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAME 255 (426)
T ss_dssp TBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTT-TTSCBCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGG
T ss_pred ccchHHHHHHHHHHHHhccCCCceEEEEEecccCC-CCcccCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhh
Confidence 23478999999997311113577777754 455 998777 99999999999999999999883 2211 1111
Q ss_pred CCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHH-
Q 038499 283 SGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ- 361 (609)
Q Consensus 283 ~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~- 361 (609)
.. ...+|++ |++|++|+...+|++++++++ ++.+.+...+ ...+.+.+.+
T Consensus 256 ~~-~~~~di~--s~sK~~~~GlriG~~~~~~~~--~~~l~~~~~~------------------------~~~~~~~~~~~ 306 (426)
T 1sff_A 256 QM-GVAPDLT--TFAKSIAGGFPLAGVTGRAEV--MDAVAPGGLG------------------------GTYAGNPIACV 306 (426)
T ss_dssp GT-TSCCSEE--EECGGGGTSSCCEEEEEEHHH--HTTSCTTSBC------------------------CSSSSCHHHHH
T ss_pred hc-CCCCCEE--EEcccccCCCceEEEEEcHHH--HhhhccCCcC------------------------cCCCCCHHHHH
Confidence 11 0135766 667999853347999999988 4444321100 0111222222
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCC
Q 038499 362 MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETD 437 (609)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~ 437 (609)
.+.+++.+. +. +.+.++.+++++++.++|.+ ++.+....+ ...++++.+.. ... ....
T Consensus 307 a~~aal~~~--~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~-~~~--------~~~~ 368 (426)
T 1sff_A 307 AALEVLKVF--EQ---ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRG----LGAMIAIELFE-DGD--------HNKP 368 (426)
T ss_dssp HHHHHHHHH--HH---TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEE----ETTEEEEEEBG-GGC--------TTSB
T ss_pred HHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEEec-Ccc--------ccCC
Confidence 223444443 22 13455666667777766654 444333222 23555555532 000 0000
Q ss_pred CCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 038499 438 KPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEA 517 (609)
Q Consensus 438 ~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~a 517 (609)
...+...+.+.|.+ .||.+++|..+ ++++||++++.++++|+++++++
T Consensus 369 ~~~~~~~l~~~l~~-~gi~v~~~~~~-------------------------------~~~iRi~~~~~~~~~~i~~~~~~ 416 (426)
T 1sff_A 369 DAKLTAEIVARARD-KGLILLSCGPY-------------------------------YNVLRILVPLTIEDAQIRQGLEI 416 (426)
T ss_dssp CHHHHHHHHHHHHH-TTEECEEESTT-------------------------------SCEEEECCCTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHH-CCcEEecCCCC-------------------------------CCEEEEECCccCCHHHHHHHHHH
Confidence 01235678888866 59999865421 37999999999999999999999
Q ss_pred HHHHHHhc
Q 038499 518 LEFIAIYG 525 (609)
Q Consensus 518 l~~v~~~~ 525 (609)
|+++++..
T Consensus 417 l~~~l~~~ 424 (426)
T 1sff_A 417 ISQCFDEA 424 (426)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987653
|
| >4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.9e-21 Score=205.92 Aligned_cols=331 Identities=12% Similarity=0.069 Sum_probs=206.7
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
.|+|+.++ |..++.+.+++.+.+......... + ......++++++++++|.+ +++|+ +|++++
T Consensus 40 ~~lD~~~~~~~~~lg~~~p~v~~a~~~~~~~~~~~~~~--~-----~~~~~~~l~~~la~~~~~~---~v~~~-~gg~~a 108 (406)
T 4adb_A 40 EYIDFAGGIAVNALGHAHPELREALNEQASKFWHTGNG--Y-----TNEPVLRLAKKLIDATFAD---RVFFC-NSGAEA 108 (406)
T ss_dssp EEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCSCCCTT--S-----CCHHHHHHHHHHHHHSSCS---EEEEE-SSHHHH
T ss_pred EEEECCCchhhcccCCCCHHHHHHHHHHHHhcccccCC--c-----CCHHHHHHHHHHHhhCCCC---eEEEe-CcHHHH
Confidence 48888765 334788999998888654322211 1 1245778999999999864 78998 555667
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccchHHHHHHcC-------------ceEEEEecCCCCCCCH
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHSNLLSWRQSL-------------AEVVEIGLDDDGLLDI 218 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G-------------~~vv~v~~~~~g~ld~ 218 (609)
+..++.++... ....-.+| + .|++....||.....+...+ .++..++. .|+
T Consensus 109 ~~~al~~~~~~--------~~~~~~~g~~--~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~ 173 (406)
T 4adb_A 109 NEAALKLARKF--------AHDRYGSHKS--GIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAY-----NDI 173 (406)
T ss_dssp HHHHHHHHHHH--------HHHHTCTTCC--EEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECT-----TCH
T ss_pred HHHHHHHHHHH--------HHhcCCCCCc--EEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCC-----CcH
Confidence 77776654200 00000145 5 46666666666544444333 24555554 389
Q ss_pred HHHHHHHhhhccCCCceEEEEecccCcccccc-----CHHHHHHHHHHhCCeEEEeccccC-Cccc--ccCCCCCCCCcc
Q 038499 219 EALRSKLELYKDAKRPILGSFSACSNVTGIYS-----DTRSIARLLHQYGGFACFDFAASG-PYVE--IDVRSGQTDGYD 290 (609)
Q Consensus 219 e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~-----dl~~I~~la~~~g~~vivD~A~~~-~~~~--id~~~~~~~~~D 290 (609)
++|+++++ +++++++++ ++|+||.+. ++++|.++|++||+++|+|++++. +... +.+... ....|
T Consensus 174 ~~l~~~l~-----~~~~~v~~~-p~np~g~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~-~~~~d 246 (406)
T 4adb_A 174 NSASALID-----DSTCAVIVE-PIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHY-GVTPD 246 (406)
T ss_dssp HHHHTTCS-----TTEEEEEEC-SEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHH-TCCCS
T ss_pred HHHHHHhc-----CCeEEEEEe-CCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCccchhHHHHhc-CCCCC
Confidence 99999987 689999999 899998765 588999999999999999999862 2211 111111 01457
Q ss_pred EEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHH-HHHHHHHH
Q 038499 291 AIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ-MIRAALAF 369 (609)
Q Consensus 291 ~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~-~~~aal~~ 369 (609)
++++ ||++++..++|++++++++ ++.+.+...++. .+.+.+.+ ...+++..
T Consensus 247 ~~t~--sK~~~~G~r~G~~~~~~~~--~~~~~~~~~~~~------------------------~~~~~~~~~a~~~~l~~ 298 (406)
T 4adb_A 247 LLTT--AKALGGGFPVGALLATEEC--ARVMTVGTHGTT------------------------YGGNPLASAVAGKVLEL 298 (406)
T ss_dssp EEEE--CGGGGTTSCCEEEEECHHH--HHTCCTTSSCCS------------------------STTCHHHHHHHHHHHHH
T ss_pred EEEe--chhhcCCCCeEEEEEcHHH--HhhhccCCcCCC------------------------CCCCHHHHHHHHHHHHH
Confidence 7754 8999854468999999988 444433311110 11122222 12222222
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc-eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHH
Q 038499 370 WVKEYIGHEVIKKQEETYIERALERLLPNQN-IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATL 448 (609)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~-i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 448 (609)
. ..+.+.++.+++++++.+.|+++.. +.+.... .....++++.+.. .. ..+...+.+.
T Consensus 299 ~-----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~g~~~~~~~~~-~~--------------~~~~~~~~~~ 357 (406)
T 4adb_A 299 I-----NTPEMLNGVKQRHDWFVERLNTINHRYGLFSEV-RGLGLLIGCVLNA-DY--------------AGQAKQISQE 357 (406)
T ss_dssp H-----SSHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEE-EEETTEEEEEECT-TT--------------TTCHHHHHHH
T ss_pred H-----HhcCHHHHHHHHHHHHHHHHHHHHHhCCCceEE-EEEEEEEEEEEeC-Cc--------------HHHHHHHHHH
Confidence 1 2266777888888888888765411 1111100 0123455555543 11 0246788888
Q ss_pred HhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 449 LNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 449 L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
|.++ ||.++++. ++++|+++++.+|++|+++++++|+++++..
T Consensus 358 l~~~-gi~v~~~~---------------------------------~~~iRi~~~~~~~~e~i~~~~~~l~~~l~~~ 400 (406)
T 4adb_A 358 AAKA-GVMVLIAG---------------------------------GNVVRFAPALNVSEEEVTTGLDRFAAACEHF 400 (406)
T ss_dssp HHHT-TEECEESS---------------------------------TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHC-CcEEeecC---------------------------------CCeEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8765 99988531 3799999999999999999999999988764
|
| >2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.2e-21 Score=212.67 Aligned_cols=351 Identities=13% Similarity=0.103 Sum_probs=211.7
Q ss_pred eEEecCCCCC---CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 78 LTYADHTASG---RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 78 ~vyld~~a~g---~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
..|+|+.+.. +.++.+.+++.. +. . .+. ......++++.+++++|.+ ++++|++|+. ++.
T Consensus 42 ~~ylD~~~~~~~~~~~~~~~~a~~~------~~--~-~y~----~~~~~~~l~~~la~~~~~~---~~~~~~~gt~-a~~ 104 (456)
T 2ez2_A 42 DIYIDLLTDSGTNAMSDKQWAGMMM------GD--E-AYA----GSENFYHLERTVQELFGFK---HIVPTHQGRG-AEN 104 (456)
T ss_dssp GCSEECSCSSSCCCCCHHHHHHHTT------CC--C-CSS----SCHHHHHHHHHHHHHHCCS---EEEEESSHHH-HHH
T ss_pred cceeeeccccCCccCCHHHHHHhhc------ch--h-hcc----cChhHHHHHHHHHHHhCCC---cEEEeCCcHH-HHH
Confidence 4588886542 445666666541 11 1 011 1234677899999999974 6888866655 677
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCc-cchHHHHHHcCceEEEEecCC----------CCCCCHHHHHH
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEH-HSNLLSWRQSLAEVVEIGLDD----------DGLLDIEALRS 223 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h-~s~~~~~~~~G~~vv~v~~~~----------~g~ld~e~L~~ 223 (609)
.++.++ +++|| +++..+| .++...++..|++++.++++. ++.+|+++|++
T Consensus 105 ~al~~l---------------~~~gd----i~~~~~~~~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~d~~~l~~ 165 (456)
T 2ez2_A 105 LLSQLA---------------IKPGQ----YVAGNMYFTTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQK 165 (456)
T ss_dssp HHHHHH---------------CCTTC----EEEESSCCHHHHHHHHHTTCEEEECBCGGGGCTTCCCSCTTCBCHHHHHH
T ss_pred HHHHHh---------------CCCCC----EeccccccchhHHHHHHcCCEEEEecccccccccccccccCCCCHHHHHH
Confidence 777665 36787 4555667 676778888999999998863 26789999999
Q ss_pred HHhhhccCCCceEEEEecccC-ccccccC---HHHHHHHHHHhCCeEEEeccccCC-----------cccccCC----CC
Q 038499 224 KLELYKDAKRPILGSFSACSN-VTGIYSD---TRSIARLLHQYGGFACFDFAASGP-----------YVEIDVR----SG 284 (609)
Q Consensus 224 al~~~~~~~~~~lv~~s~~sn-~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~-----------~~~id~~----~~ 284 (609)
++++.. ..+++++++++++| +||.+.| +++|+++|++||+++|+|++++.| +....+. ..
T Consensus 166 ~i~~~t-~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~g~~~~~~~~~~~~~g~~~~~~~~~~ 244 (456)
T 2ez2_A 166 LIDEKG-AENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVHEM 244 (456)
T ss_dssp HHHHHC-GGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHH
T ss_pred HHHhcc-ccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccccccccccccccccCCcchhhhhhhh
Confidence 998421 01248999999998 9999987 899999999999999999998763 2111110 00
Q ss_pred CCCCccEEEEcCCCCCCCCCCcEEEEE-echhhccCCCCCCcc-CCCceEeecccccccccccccccccccCCChhHHHH
Q 038499 285 QTDGYDAIFLSTHKFLGGPGSPGILLM-TKALYQLGSFPPSTC-GGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362 (609)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~g~G~L~~-~~~~~~l~~~~p~~~-ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~ 362 (609)
....|++++|+||++++| ..|+++. ++++. +.+..... +.+. ....|. +...+
T Consensus 245 -~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~--~~~~~~~~~~~~~--------------------~~~~~~-~~~~~ 299 (456)
T 2ez2_A 245 -FSYADGCTMSGKKDCLVN-IGGFLCMNDDEMF--SSAKELVVVYEGM--------------------PSYGGL-AGRDM 299 (456)
T ss_dssp -HTTCSEEEEETTTTTCCS-SCEEEEESCHHHH--HHHHHHHHHHTCC--------------------TTTTTC-CHHHH
T ss_pred -cccCCEEEEeCcccCCCC-ceeEEEECCHHHH--HHHHHHHhhccCc--------------------ccccCc-chhHH
Confidence 013588888999997744 4699988 45552 22211100 0000 001111 11122
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEec---cCCCCCcCCCCCCCCCCCC
Q 038499 363 IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIH---SSTINSSLGENTKTETDKP 439 (609)
Q Consensus 363 ~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~---~~~~~~~~~~~~~~~~~~~ 439 (609)
..+++... +... +...++.+++.+++.+.|.+. ++.+..+. ...++++.+. + .. ....
T Consensus 300 ~a~a~~~~--~~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~~~p~---~~~~~~~~~~~~~~-~~-----------~~~~ 360 (456)
T 2ez2_A 300 EAMAIGLR--EAMQ-YEYIEHRVKQVRYLGDKLKAA-GVPIVEPV---GGHAVFLDARRFCE-HL-----------TQDE 360 (456)
T ss_dssp HHHHHHHH--HHTC-HHHHHHHHHHHHHHHHHHHHT-TCCBCSSC---CSSEEEEEHHHHTT-TS-----------CGGG
T ss_pred HHHHHHHH--HHhH-HHHHHHHHHHHHHHHHHHhcC-CCccccCC---CceEEEEEhHHhcC-CC-----------Chhh
Confidence 11132222 2222 455566677888888888774 67665542 2333333332 2 11 0000
Q ss_pred CChHHHHHHHhhhcCcEecc-CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC-CCHHHHHHHHHH
Q 038499 440 LHGPFVATLLNDLFGIQARG-GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY-MSNEEFEFTLEA 517 (609)
Q Consensus 440 l~~~~v~~~L~~~~GI~v~~-G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~-~t~eeid~ll~a 517 (609)
+....+++.|.++.||.+.+ |..|.+. +...+.+ .....+++||+++.+ ++++|+++++++
T Consensus 361 ~~~~~l~~~L~~~~gv~~~~~g~~~~~~--~~~~g~~---------------~~~~~~~iRis~~~~~~t~e~i~~~~~~ 423 (456)
T 2ez2_A 361 FPAQSLAASIYVETGVRSMERGIISAGR--NNVTGEH---------------HRPKLETVRLTIPRRVYTYAHMDVVADG 423 (456)
T ss_dssp CHHHHHHHHHHHHHSEECEEESHHHHCB--CTTTCSB---------------CCCSCCEEEEECCTTTCCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhcCeeeeccccccccc--Ccccccc---------------ccCCCCeEEEEeCCCCCCHHHHHHHHHH
Confidence 11233366664456998654 5444321 0000000 000137899999987 899999999999
Q ss_pred HHHHHHhcc
Q 038499 518 LEFIAIYGQ 526 (609)
Q Consensus 518 l~~v~~~~~ 526 (609)
|+++++...
T Consensus 424 l~~~l~~~~ 432 (456)
T 2ez2_A 424 IIKLYQHKE 432 (456)
T ss_dssp HHHHHHTGG
T ss_pred HHHHHhhhh
Confidence 999987644
|
| >3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=8.6e-25 Score=232.72 Aligned_cols=330 Identities=13% Similarity=0.080 Sum_probs=214.5
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
.++.+.+++.+.+.. ... .| .....++++.+.+++++.+| .+++ +|+++ +|+++++..++.++
T Consensus 45 ~~~~v~~a~~~~~~~----~~~-~y--~~~~~~l~~~la~~l~~~~g~~~~~~-~v~~~-~g~~~a~~~~~~~~------ 109 (392)
T 3b1d_A 45 VMPEVKQAIHDYAEQ----LVY-GY--TYASDELLQAVLDWEKSEHQYSFDKE-DIVFV-EGVVPAISIAIQAF------ 109 (392)
Confidence 456677777766532 111 11 11123334444444444455 4454 78888 78888888887776
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-C--CCCCHHHHHHHHhhhccCCCceEEEEeccc
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-D--GLLDIEALRSKLELYKDAKRPILGSFSACS 243 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~--g~ld~e~L~~al~~~~~~~~~~lv~~s~~s 243 (609)
+++|| .|++..+.|+++...++..|++++.++.++ + +.+|+++|++++++ ++++++++++++
T Consensus 110 ---------~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~d~~~l~~~l~~----~~~~~v~~~~~~ 174 (392)
T 3b1d_A 110 ---------TKEGE--AVLINSPVYPPFARSVRLNNRKLVSNSLKEENGLFQIDFEQLENDIVE----NDVKLYLLCNPH 174 (392)
Confidence 36787 699999999999888888999999999853 2 35899999999874 468888899999
Q ss_pred CccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCCCC--CCccEEEEcCCCCCCCC-CCcEEEEEec
Q 038499 244 NVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQT--DGYDAIFLSTHKFLGGP-GSPGILLMTK 313 (609)
Q Consensus 244 n~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~--~~~D~v~~S~hK~lggp-~g~G~L~~~~ 313 (609)
||||.+.+ +++|.++|++||+++|+|++++.... ...+..+.. .+.++++.|++|++|.| ..+|++++++
T Consensus 175 nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~r~G~~~~~~ 254 (392)
T 3b1d_A 175 NPGGRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGTKNSYAIIEN 254 (392)
Confidence 99999976 88899999999999999999875321 122322211 24568889999999744 3589999875
Q ss_pred h-hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 038499 314 A-LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERAL 392 (609)
Q Consensus 314 ~-~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~ 392 (609)
+ + ++.+..... ....++++.+.... +.+.+.......+.++++.+++++++.
T Consensus 255 ~~~--~~~~~~~~~------------------------~~~~~~~~~~~~~a-~~~~l~~~~~~~~~~~~~~~~~~~~l~ 307 (392)
T 3b1d_A 255 PTL--CAQFKHQQL------------------------VNNHHEVSSLGYIA-TETAYRYGKPWLVALKAVLEENIQFAV 307 (392)
Confidence 4 6 333322110 01111222222111 111111112345667778888888999
Q ss_pred HHhCC-CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh
Q 038499 393 ERLLP-NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL 471 (609)
Q Consensus 393 ~~L~~-~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l 471 (609)
+.|++ +|++++..+ ..+++.+...+ .. ..+...+.+.|.++.||.+++|..|...
T Consensus 308 ~~l~~~~~~~~~~~~----~~~~~~~i~~~-~~--------------~~~~~~l~~~l~~~~gi~v~~g~~f~~~----- 363 (392)
T 3b1d_A 308 EYFAQEAPRLKVMKP----QGTYLIWLDFS-DY--------------GLTDDALFTLLHDQAKVILNRGSDYGSE----- 363 (392)
Confidence 99987 788877654 23444333222 10 0235567788864579999988765411
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.++++||+++. ++++++.++++|+++++
T Consensus 364 ----------------------~~~~iRi~~~~--~~e~i~~~l~~l~~~l~ 391 (392)
T 3b1d_A 364 ----------------------GELHARLNIAA--PKSLVEEICKRIVCCLP 391 (392)
Confidence 14789999874 68899999999887654
|
| >2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.2e-21 Score=203.77 Aligned_cols=341 Identities=11% Similarity=0.086 Sum_probs=212.0
Q ss_pred CCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCC
Q 038499 65 KNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQ 138 (609)
Q Consensus 65 ~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~ 138 (609)
.+.++.+..| ..|+|.+++ |..++.|.+++.+.+... .+.... + ......++++++++++|.
T Consensus 47 ~g~~~~d~~g---~~~lD~~~~~~~~~lG~~~p~v~~ai~~~~~~~-~~~~~~-~-----~~~~~~~l~~~la~~~g~-- 114 (420)
T 2pb2_A 47 KGSRVWDQQG---KEYIDFAGGIAVTALGHCHPALVEALKSQGETL-WHTSNV-F-----TNEPALRLGRKLIDATFA-- 114 (420)
T ss_dssp EBTEEEETTC---CEEEESSHHHHTCTTCBTCHHHHHHHHHHHTTC-CCCCTT-S-----CCHHHHHHHHHHHHHSSC--
T ss_pred ecCEEEECCC---CEEEEccccccccccCCCCHHHHHHHHHHHHhc-ccccCc-c-----CCHHHHHHHHHHHhhCCC--
Confidence 3344444444 348887643 556788999998887653 222111 1 235678899999999984
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHcCce------------E
Q 038499 139 EDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQSLAE------------V 205 (609)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G~~------------v 205 (609)
++|+|+ +|+++++..++.++.... +. .-.+|+. .|++....||+. .......|.+ +
T Consensus 115 -~~v~~~-~ggteA~~~al~~~~~~~----~~----~~~~g~~-~vi~~~~~yh~~~~~~~~~~g~~~~~~~~~p~~~~~ 183 (420)
T 2pb2_A 115 -ERVLFM-NSGTEANETAFKLARHYA----CV----RHSPFKT-KIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADI 183 (420)
T ss_dssp -SEEEEE-SSHHHHHHHHHHHHHHHH----HH----HTCTTCC-EEEEETTCCCCSSHHHHHHSSCHHHHTTSSSCCSCE
T ss_pred -CeEEEe-CCHHHHHHHHHHHHHHHh----hh----ccCCCCC-EEEEEeCCcCCcCHHHHHhcCCccccccCCCCCCCe
Confidence 389999 455557777766542000 00 0015543 466655555554 4344444543 5
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccc----cCHHHHHHHHHHhCCeEEEeccccC-Cccc--
Q 038499 206 VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY----SDTRSIARLLHQYGGFACFDFAASG-PYVE-- 278 (609)
Q Consensus 206 v~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~----~dl~~I~~la~~~g~~vivD~A~~~-~~~~-- 278 (609)
..++.+ |+++|+++++ +++++++++.++|++|.+ .++++|.++|++||+++|+|++++. +...
T Consensus 184 ~~~~~~-----d~~~le~~i~-----~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~g~~~~g~~ 253 (420)
T 2pb2_A 184 IHVPFN-----DLHAVKAVMD-----DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253 (420)
T ss_dssp EEECTT-----CHHHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred EEecCC-----CHHHHHHHhc-----cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHcCCEEEEEcCCcCcccCCcH
Confidence 666643 8999999998 579999999999988862 4588999999999999999999862 2111
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
+.+... ....|+++ ++|+++++.++|++++++++ ++.+.+...+ .+ + .+.+.
T Consensus 254 ~~~~~~-~~~~diit--~sK~l~~G~~iG~~~~~~~l--~~~l~~~~~~-~t---------------------~-~~~~~ 305 (420)
T 2pb2_A 254 FAYMHY-GVTPDILT--SAKALGGGFPVSAMLTTQEI--ASAFHVGSHG-ST---------------------Y-GGNPL 305 (420)
T ss_dssp SHHHHH-TCCCSEEE--ECGGGGTTSCCEEEEECHHH--HTTCC----C-CE---------------------E-CCCHH
T ss_pred HHHHhc-CCCCCeEE--ecccccCCCceEEEEEhHHH--HHhhcCCCcC-cc---------------------c-CcCHH
Confidence 100001 01468774 57999865569999999987 4444331100 00 0 12222
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN----QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKT 434 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~ 434 (609)
......+++... + .+.+.++.+++++++.+.|+++ |.+....+ ...++++.+.. ..
T Consensus 306 ~~aa~~a~L~~~--~---~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~v~~~~-~~---------- 365 (420)
T 2pb2_A 306 ACAVAGAAFDII--N---TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRG----MGLLIGAELKP-KY---------- 365 (420)
T ss_dssp HHHHHHHHHHHH--S---SHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEE----ETTEEEEEECG-GG----------
T ss_pred HHHHHHHHHHHH--H---hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cceEEEEEECC-Cc----------
Confidence 222223333332 1 1566777888888888887654 43332211 33555655543 10
Q ss_pred CCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHH
Q 038499 435 ETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFT 514 (609)
Q Consensus 435 ~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~l 514 (609)
......+.+.|.+ .||.++++. ++++||++++.+|++|++++
T Consensus 366 ----~~~~~~l~~~l~~-~Gi~v~~~~---------------------------------~~~iRl~~~~~~t~eei~~~ 407 (420)
T 2pb2_A 366 ----KGRARDFLYAGAE-AGVMVLNAG---------------------------------ADVMRFAPSLVVEEADIHEG 407 (420)
T ss_dssp ----TTCHHHHHHHHHH-TTEECEESS---------------------------------TTEEEECCCTTCCHHHHHHH
T ss_pred ----hHHHHHHHHHHHH-CCCEEEeCC---------------------------------CCEEEEECCCCCCHHHHHHH
Confidence 0146778888876 699988531 37899999999999999999
Q ss_pred HHHHHHHHHh
Q 038499 515 LEALEFIAIY 524 (609)
Q Consensus 515 l~al~~v~~~ 524 (609)
+++|+++++.
T Consensus 408 ~~~l~~~l~~ 417 (420)
T 2pb2_A 408 MQRFAQAVGK 417 (420)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
|
| >3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-21 Score=212.64 Aligned_cols=330 Identities=13% Similarity=0.057 Sum_probs=210.0
Q ss_pred EEecCCCCCCChHHHHHHHHHhhc-CCccCCCCCCchhhHHHHHHHHHHHHHHHHHh-CCC-----CCCcEEE--eCChH
Q 038499 79 TYADHTASGRSLRYIENYIINNVL-PFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL-GGG-----QEDAMIF--CGSGT 149 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~-~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~-g~~-----~~~~vif--t~sGt 149 (609)
+|+|+.+..+..+.+.+++.+... ....+.... ...| ..++|+.+++++ |.+ ++ +|++ | +|+
T Consensus 58 ~~~d~~~~~~v~~av~~a~~~~~~~~~~~~~~Y~-~~~G------~~~lr~~ia~~l~g~~~~~~~~~-~i~~~~t-~gg 128 (448)
T 3meb_A 58 AYRDESGKPWILPAVKEAEAIISSDLSKYNKEYP-PVAG------FPLFLEAAQFLMFGKDSKAAQEG-RIASCQS-LSG 128 (448)
T ss_dssp CCCCTTSCCCCCHHHHHHHHHHHHCTTTTCCSCC-CTTC------CHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-SHH
T ss_pred cccCCCCCEechHHHHHHHHHHhhcccCCCCCCC-CCcc------hHHHHHHHHHHhcCCCccccCcC-cEEEEEC-CcH
Confidence 478888888888888888654331 111111111 1112 456788888887 776 44 8998 8 777
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH----HcCceEEEEec-CCC--CCCCHHHHH
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----QSLAEVVEIGL-DDD--GLLDIEALR 222 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~~vv~v~~-~~~--g~ld~e~L~ 222 (609)
+++++.++..+. .+.+|| .|+++.+.|+++...++ ..|++++.++. +++ +.+|+++|+
T Consensus 129 t~al~l~~~~~~-------------~~~~gd--~Vlv~~p~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~~~~~d~e~l~ 193 (448)
T 3meb_A 129 TGSLHIGFEFLH-------------LWMPKA--EFYMPSTTWPNHYGIYDKVFNKLKVPYKEYTYLRKDGELEIDFSNTK 193 (448)
T ss_dssp HHHHHHHHHHHH-------------HHCTTC--CEEEESSCCTHHHHHHHHHHCTTTSCCEEECCBCTTSCSSBCHHHHH
T ss_pred HHHHHHHHHHHH-------------HhCCCC--EEEECCCCCHhHHHHHHhhHHhCCCeEEEEeccccccCCCcCHHHHH
Confidence 878877543322 146888 59999999999998899 89999999998 554 789999999
Q ss_pred HHHhhhccCCCceEEEEecccCccccccCHH---HHHHHHHHhCCeEEEeccccCC-cccc--c---CCCC-CCCCccEE
Q 038499 223 SKLELYKDAKRPILGSFSACSNVTGIYSDTR---SIARLLHQYGGFACFDFAASGP-YVEI--D---VRSG-QTDGYDAI 292 (609)
Q Consensus 223 ~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~---~I~~la~~~g~~vivD~A~~~~-~~~i--d---~~~~-~~~~~D~v 292 (609)
+++++. .++++++++++++||||.+.+.+ +|+++|++||+++++|+++... +... + +... ......++
T Consensus 194 ~~l~~~--~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~ 271 (448)
T 3meb_A 194 KDIQSA--PEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFDSAYQGFATGSFEADAFAVRMFVDAGVEVLV 271 (448)
T ss_dssp HHHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEE
T ss_pred HHHHhC--CCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEecccccccCCCcccCchhHHHHhhcCCcEEE
Confidence 999842 12578999999999999998854 5999999999999999996632 2221 1 1100 01123467
Q ss_pred EEcCCCCCCCCC-CcEEE--EE--------ec-----hhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 293 FLSTHKFLGGPG-SPGIL--LM--------TK-----ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 293 ~~S~hK~lggp~-g~G~L--~~--------~~-----~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
+.|+||.+|.++ ++|++ ++ .+ ++ +..+. . ..+....+
T Consensus 272 ~~S~SK~~g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l--~~~l~------------------------~-~~~~~~~~ 324 (448)
T 3meb_A 272 AQSFSKNFGLYGERIGCLHVVHAGVEGSVEKNKALSAAM--VSGMT------------------------L-QIRKTWSM 324 (448)
T ss_dssp EEECTTTSCCGGGCCEEEEEECCCCSSSHHHHHHHHHHH--HHHHH------------------------H-HHHTTTSS
T ss_pred EecccccCCCccccceeeeeeeccccccccCCHHHHHHH--HHHHH------------------------H-HHhcccCC
Confidence 889999998442 48998 55 33 22 11110 0 01111222
Q ss_pred h-hHHHHHHHHHHHHH---H-H-hcCHHHHHHHHHHHHHHHHHHhCCC--Cc------eEEeCCCCCCCcceEEEEeccC
Q 038499 357 P-QVIQMIRAALAFWV---K-E-YIGHEVIKKQEETYIERALERLLPN--QN------IKILGNTSTKRQAILSFNIHSS 422 (609)
Q Consensus 357 p-~i~~~~~aal~~~~---~-~-~~g~~~i~~~~~~l~~~~~~~L~~~--p~------i~v~~~~~~~r~~~~~f~~~~~ 422 (609)
+ .+.+.+.+. .+.. . + ....+.+.++.+++++++.+.|.++ ++ +.+..+ ..++++|. .
T Consensus 325 ~~~~~~~a~~~-~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~----~~g~~~~~--~- 396 (448)
T 3meb_A 325 SAIHGAYIVQV-IVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILT----AIGMFTFT--G- 396 (448)
T ss_dssp CCHHHHHHHHH-HHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHH----CCSSEEEC--C-
T ss_pred ccHHHHHHHHH-HhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCC----CceEEEec--C-
Confidence 3 333322211 1100 0 0 0125677788888899999988765 44 332222 23444443 2
Q ss_pred CCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec
Q 038499 423 TINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF 502 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~ 502 (609)
+.. +++..|.+++||.+.+|. + |||+
T Consensus 397 -----------------~~~-~~~~~ll~~~gV~v~~G~----------------------------------g--Ris~ 422 (448)
T 3meb_A 397 -----------------LTP-EHVDYLKEKWSIYLVKAG----------------------------------G--RMSM 422 (448)
T ss_dssp -----------------CCH-HHHHHHHHHHCEEECSGG----------------------------------G--EEEG
T ss_pred -----------------CCH-HHHHHHHHhCCEEEeCCC----------------------------------c--EEEE
Confidence 233 445555566799998541 2 9999
Q ss_pred CCCCCHHHHHHHHHHHHHHHHh
Q 038499 503 PYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 503 ~~~~t~eeid~ll~al~~v~~~ 524 (609)
+.. +++++++++++|+++++.
T Consensus 423 a~~-~~~~i~~~~~~l~~~l~~ 443 (448)
T 3meb_A 423 CGL-TESNCDYVAEAIHDAVTK 443 (448)
T ss_dssp GGC-CTTTHHHHHHHHHHHHHH
T ss_pred ecC-CHHHHHHHHHHHHHHHHh
Confidence 643 566799999999999874
|
| >3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=3e-21 Score=206.11 Aligned_cols=307 Identities=15% Similarity=0.099 Sum_probs=199.8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH
Q 038499 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW 198 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (609)
......++++.++++.|.+ .++++++| ++|+..++. + +++|| .|+++...|++....+
T Consensus 65 ~~p~~~~l~~~la~l~g~~---~~~~~~sG-~~Ai~~~~~-l---------------~~~gd--~Vi~~~~~y~~~~~~~ 122 (400)
T 3nmy_A 65 HNPTRFAYERCVAALEGGT---RAFAFASG-MAATSTVME-L---------------LDAGS--HVVAMDDLYGGTFRLF 122 (400)
T ss_dssp CCHHHHHHHHHHHHHHTCS---EEEEESSH-HHHHHHHHT-T---------------SCTTC--EEEEESSCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCC---CEEEecCH-HHHHHHHHH-H---------------cCCCC--EEEEeCCCchHHHHHH
Confidence 3455778999999999985 34555588 556776422 2 47888 6999999999776665
Q ss_pred HH-----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecccc
Q 038499 199 RQ-----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 199 ~~-----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~ 273 (609)
.. .|++++.++.+ |+++|+++++ +++++|++++++||||.+.|+++|+++|++||+++|+|++++
T Consensus 123 ~~~~~~~~g~~~~~v~~~-----d~~~l~~~i~-----~~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~ 192 (400)
T 3nmy_A 123 ERVRRRTAGLDFSFVDLT-----DPAAFKAAIR-----ADTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFA 192 (400)
T ss_dssp HHTHHHHHCCEEEEECTT-----SHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTT
T ss_pred HHhhHhhcCeEEEEECCC-----CHHHHHHHhc-----cCCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCc
Confidence 43 59999999875 8999999998 689999999999999999999999999999999999999987
Q ss_pred CCcccccCCCCCCCCccEEEEcCCCCCCCCC-C-cE-EEEEec-hhhccCCCCCCccCCCceEeeccccccccccccccc
Q 038499 274 GPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG-S-PG-ILLMTK-ALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 274 ~~~~~id~~~~~~~~~D~v~~S~hK~lggp~-g-~G-~L~~~~-~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (609)
.+.....+. .++|+++.|+||+++||+ . .| ++++++ ++ .+.+...
T Consensus 193 ~~~~~~~~~----~g~div~~S~sK~l~g~g~~~gG~~vv~~~~~~--~~~l~~~------------------------- 241 (400)
T 3nmy_A 193 SPMLQRPLS----LGADLVVHSATKYLNGHSDMVGGIAVVGDNAEL--AEQMAFL------------------------- 241 (400)
T ss_dssp HHHHCCGGG----GTCSEEEEETTTTTTCSSSCCCEEEEECSCHHH--HHHHHHH-------------------------
T ss_pred ccccCChhh----cCCcEEEecCccccCCCCCcceeEEEEeCCHHH--HHHHHHH-------------------------
Confidence 554221111 278999999999999874 2 35 455443 33 1121100
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcceE
Q 038499 350 ERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAIL 415 (609)
Q Consensus 350 ~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~ 415 (609)
......+.+.... .+++. .....+...++..+.++++.+.|++.|.+. +..|.- ....+++
T Consensus 242 ~~~~g~~~~~~~a-~~~l~----~l~~l~~r~~~~~~~a~~l~~~L~~~p~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~ 316 (400)
T 3nmy_A 242 QNSIGGVQGPFDS-FLALR----GLKTLPLRMRAHCENALALAQWLETHPAIEKVIYPGLASHPQHVLAKRQMSGFGGIV 316 (400)
T ss_dssp HHHHCCBCCHHHH-HHHHH----HHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred HHhcCCCCCHHHH-HHHHH----hHhHHHHHHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceE
Confidence 0000111111111 11111 112345556677788889999999998876 433310 1135688
Q ss_pred EEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCC
Q 038499 416 SFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVG 492 (609)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~ 492 (609)
+|.+.. +. .....+.+.| +.+++.+..|..++ .|.......+..+...+ .|
T Consensus 317 ~~~l~~-~~---------------~~~~~~~~~l-~~~~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~---------~g 370 (400)
T 3nmy_A 317 SIVLKG-GF---------------DAAKRFCEKT-ELFTLAESLGGVESLVNHPAVMTHASIPVARREQ---------LG 370 (400)
T ss_dssp EEEETT-HH---------------HHHHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTTTSCHHHHHH---------HT
T ss_pred EEEeCC-cH---------------HHHHHHHHcC-CcceEecCCCCCcceeeCccccccccCCHHHHHh---------cC
Confidence 888764 11 1234555666 45677777776543 24333222333222111 24
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 493 VKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 493 ~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
+.++.+|+|++....++.++.+.++|+
T Consensus 371 i~~~liRlsvGle~~~dli~dl~~al~ 397 (400)
T 3nmy_A 371 ISDALVRLSVGIEDLGDLRGDLERALV 397 (400)
T ss_dssp CCTTEEEEECCSSCHHHHHHHHHHHHC
T ss_pred CCcCeEEEEeCcCCHHHHHHHHHHHHh
Confidence 567999999998777776666666654
|
| >3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-20 Score=199.54 Aligned_cols=342 Identities=13% Similarity=0.056 Sum_probs=205.4
Q ss_pred CCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCC
Q 038499 65 KNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQ 138 (609)
Q Consensus 65 ~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~ 138 (609)
.+.++.+..|+ .|+|+.++ |..++.|.+++.+.+....... . ........++++++++++|.
T Consensus 26 ~G~~~~d~~g~---~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~~~-~------~~~~~~~~~l~~~la~~~~~-- 93 (395)
T 3nx3_A 26 QGVYLFDDKAK---KYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHTS-N------LYYNENIAAAAKNLAKASAL-- 93 (395)
T ss_dssp EBTEEEETTCC---EEEESSHHHHTCTTCBSCHHHHHHHHHHHTTCSCCC-T------TSBCHHHHHHHHHHHHHHTC--
T ss_pred eeeEEEECCCC---EEEECCCcHHhccCCCCCHHHHHHHHHHHHhccccc-c------ccCCHHHHHHHHHHHHhcCC--
Confidence 34444444443 48898765 3457889999988876432111 1 11245678899999999983
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH-------------cCceE
Q 038499 139 EDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ-------------SLAEV 205 (609)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-------------~G~~v 205 (609)
+ +++|++ |.++++..++.++... .++ .-.+++ .|++.+..||+....... .+.++
T Consensus 94 ~-~v~~~~-gg~ea~~~al~~~~~~----~~~----~g~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (395)
T 3nx3_A 94 E-RVFFTN-SGTESIEGAMKTARKY----AFN----KGVKGG--QFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGV 161 (395)
T ss_dssp S-EEEEES-SHHHHHHHHHHHHHHH----HHH----TTCTTC--EEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCE
T ss_pred C-eEEEeC-CHHHHHHHHHHHHHHH----hhc----cCCCCC--EEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCc
Confidence 3 899995 4455666665543100 000 002344 566666666654322221 13456
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc-CCccc--
Q 038499 206 VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVE-- 278 (609)
Q Consensus 206 v~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~-~~~~~-- 278 (609)
..++.+ |+++|+++++ +++++++++.++|++|.+.+ +++|.++|++||+++|+|++++ .+...
T Consensus 162 ~~~~~~-----d~~~l~~~l~-----~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~ 231 (395)
T 3nx3_A 162 KFAKYN-----DISSVEKLVN-----EKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKF 231 (395)
T ss_dssp EEECTT-----CHHHHHTTCC-----TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred EEeCCC-----CHHHHHHhcc-----CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcc
Confidence 666654 7999999997 57899999999999999988 9999999999999999999987 32221
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh-hccCCCCCCccCCCceEeecccccccccccccccccccCCCh
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL-YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP 357 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~-~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp 357 (609)
...... ....|++++| |.++++.++|++++++++ .. .+.+...++.. .+.+
T Consensus 232 ~~~~~~-~~~~d~~t~s--K~~~~G~~~G~~~~~~~~~~~--~~~~~~~~~~~-----------------------~~~~ 283 (395)
T 3nx3_A 232 FAYEHA-QILPDIMTSA--KALGCGLSVGAFVINQKVASN--SLEAGDHGSTY-----------------------GGNP 283 (395)
T ss_dssp SGGGGG-TCCCSEEEEC--GGGTTTSCCEEEEECHHHHHH--HSCTTCCSSCB-----------------------SCCH
T ss_pred hhHHhc-CCCCCEEEec--ccccCCCceEEEEEchhhhhh--hcCCcccCCCC-----------------------CCCH
Confidence 111111 1135777655 988876678999999887 32 23222111110 1122
Q ss_pred hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCC
Q 038499 358 QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETD 437 (609)
Q Consensus 358 ~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~ 437 (609)
.......+++.... +..-.+.+.+....+++.+.+.+..+|.+....+ ...++++.+.. .
T Consensus 284 ~~~~aa~aal~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~-~-------------- 343 (395)
T 3nx3_A 284 LVCAGVNAVFEIFK-EEKILENVNKLTPYLEQSLDELINEFDFCKKRKG----LGFMQGLSLDK-S-------------- 343 (395)
T ss_dssp HHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEECT-T--------------
T ss_pred HHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----EEEEEEEEeCC-c--------------
Confidence 22222233333221 1111233333333334444443334555543322 23455555543 1
Q ss_pred CCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHH
Q 038499 438 KPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEA 517 (609)
Q Consensus 438 ~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~a 517 (609)
.....+.+.|.+ .||.++++. ++++||++++..|++|+++++++
T Consensus 344 --~~~~~~~~~l~~-~Gi~v~~~~---------------------------------~~~iRi~~~~~~t~e~i~~~l~~ 387 (395)
T 3nx3_A 344 --VKVAKVIQKCQE-NALLLISCG---------------------------------ENDLRFLPPLILQKEHIDEMSEK 387 (395)
T ss_dssp --SCHHHHHHHHHH-TTEECEEET---------------------------------TTEEEECCCTTCCHHHHHHHHHH
T ss_pred --chHHHHHHHHHH-CCCEEecCC---------------------------------CCEEEEECCCCCCHHHHHHHHHH
Confidence 246788888866 599988531 37999999999999999999999
Q ss_pred HHHHHHh
Q 038499 518 LEFIAIY 524 (609)
Q Consensus 518 l~~v~~~ 524 (609)
|++++++
T Consensus 388 l~~~l~~ 394 (395)
T 3nx3_A 388 LRKALKS 394 (395)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 9998763
|
| >3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.88 E-value=6.7e-21 Score=199.71 Aligned_cols=296 Identities=15% Similarity=0.100 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH--H-
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL--S- 197 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~- 197 (609)
....++++++++++|.+. . +++++|+. ++..++.++. .+||+.+|++++..|.+... .
T Consensus 48 ~~~~~l~~~la~~~~~~~--~-i~~~~g~~-a~~~a~~~~~---------------~~g~~~vvi~~~~~~~~~~~~~~~ 108 (359)
T 3pj0_A 48 AVIEDFETKIAKILGKQS--A-VFFPSGTM-AQQIALRIWA---------------DRKENRRVAYHPLSHLEIHEQDGL 108 (359)
T ss_dssp HHHHHHHHHHHHHHTCSE--E-EEESCHHH-HHHHHHHHHH---------------HHHTCCEEEECTTCHHHHSSTTHH
T ss_pred HHHHHHHHHHHHHhCCCc--E-EEeCCHHH-HHHHHHHHHH---------------hcCCCcEEEEeccceeeehhcchH
Confidence 457789999999999863 3 55557765 6666666552 45664357777777665432 2
Q ss_pred HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcc-ccccCHHHH---HHHHHHhCCeEEEecccc
Q 038499 198 WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVT-GIYSDTRSI---ARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 198 ~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~T-G~~~dl~~I---~~la~~~g~~vivD~A~~ 273 (609)
....|++++.++. +++.+|+++|+++ . ++++++++++++|+| |.+.|.+++ .++|++||+++|+|+++.
T Consensus 109 ~~~~g~~~~~v~~-~~~~~d~~~l~~~-~-----~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~ 181 (359)
T 3pj0_A 109 KELQQITPLLLGT-ANQLLTIDDIKSL-R-----EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARL 181 (359)
T ss_dssp HHHHCCEEEECSC-TTSCCCHHHHHTC-S-----SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTC
T ss_pred HHhcCceEEecCC-cCCCcCHHHHHhc-c-----CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence 2456999999987 5678999999987 4 689999999999998 798886655 999999999999999865
Q ss_pred CCcc---cccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccc
Q 038499 274 GPYV---EIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE 350 (609)
Q Consensus 274 ~~~~---~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (609)
.+.. ......+. .+.|++++|+||++++|.| |+++.++++. +.+.... .
T Consensus 182 ~~~~~~~~~~~~~~~-~~~d~~~~s~sK~~~~~~g-g~~~~~~~l~--~~~~~~~------------------------~ 233 (359)
T 3pj0_A 182 WEITPFYQKSAEEIC-ALFDSVYVSFYKGIGGIAG-AILAGNDDFV--QEAKIWK------------------------R 233 (359)
T ss_dssp GGGHHHHTCCHHHHH-TTCSEEEEESSSTTCCSSC-EEEEECHHHH--HHHHHHH------------------------H
T ss_pred hcchhhhCCCHHHhh-ccCCEEEEeccccCCCcce-EEEECCHHHH--HHHHHHH------------------------H
Confidence 4321 11111110 2579999999999998877 8888888873 2221100 0
Q ss_pred cccCCC--hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcC
Q 038499 351 RESGGT--PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSL 428 (609)
Q Consensus 351 r~~~gt--p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~ 428 (609)
....++ .+..+ .+++. .+.+. .+. .++..+.++++.+.|+++|++++.... ...+++++.+.. ..
T Consensus 234 ~~~~~~~~~~~~~--~a~~~-~l~~~--~~~-~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~~~~-~~---- 300 (359)
T 3pj0_A 234 RYGGDLISLYPYI--LSADY-YFEKR--IGK-MAEYFEAAKGLAERFNSCSGVKTVPEV--PVSNMFHVYFEN-SA---- 300 (359)
T ss_dssp HTTCCCSCCHHHH--HHHHH-HHHHH--GGG-HHHHHHHHHHHHHHHHTSTTEEEESSS--CSSSEEEEEESS-CH----
T ss_pred HhCCCcchhHHHH--HHHHH-HHHHH--HHH-hHHHHHHHHHHHHHHhhCCCceeeccC--CcceEEEEEecC-cc----
Confidence 000011 12222 11211 12222 122 334567788899999999999986321 234445544443 10
Q ss_pred CCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCC---C
Q 038499 429 GENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPY---Y 505 (609)
Q Consensus 429 ~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~---~ 505 (609)
..+..++.+.|.+ .||.+++|..+..+ ..+++|++++. .
T Consensus 301 ----------~~~~~~l~~~l~~-~GV~v~~g~~~~~~---------------------------~~~~~r~~i~~~~~~ 342 (359)
T 3pj0_A 301 ----------DEIGAILTKIQDE-TGVGISGYLQEKSA---------------------------DVCAFEVSVGDAFAE 342 (359)
T ss_dssp ----------HHHHHHHHHHHHH-HCEECCSCCEEEET---------------------------TEEEEEEECCTTGGG
T ss_pred ----------chhHHHHHHHHHh-cCcEecCCccccCC---------------------------CceEEEEEecCcccc
Confidence 0135678888865 59999988654421 13789998853 3
Q ss_pred CCHHHHHHHHHHHHHH
Q 038499 506 MSNEEFEFTLEALEFI 521 (609)
Q Consensus 506 ~t~eeid~ll~al~~v 521 (609)
.+.++++..++.|.+.
T Consensus 343 ~~~e~l~~~l~~l~~~ 358 (359)
T 3pj0_A 343 IPAKNLELVFRCLEKE 358 (359)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 5788888888877654
|
| >3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=213.59 Aligned_cols=330 Identities=17% Similarity=0.131 Sum_probs=211.7
Q ss_pred EecCCCCCCChHHHHHHHHH-hhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC-----CCC--cEEEeCChHHH
Q 038499 80 YADHTASGRSLRYIENYIIN-NVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG-----QED--AMIFCGSGTTA 151 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~-~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~-----~~~--~vift~sGtta 151 (609)
|+|.....+.++.|.+++.+ .+... .. + .|... ....++|+.++++++.. ..+ +|++| +|+++
T Consensus 36 y~d~~~~~~~~~~v~~a~~~~~~~~~-~~-~--~y~~~----~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t-~g~~~ 106 (397)
T 3fsl_A 36 YYNEDGIIPQLQAVAEAEARLNAQPH-GA-S--LYLPM----EGLNCYRHAIAPLLFGADHPVLKQQRVATIQT-LGGSG 106 (397)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHSCC-CC-C--CCCCT----TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE-SHHHH
T ss_pred EECCCCCccCcHHHHHHHHhhccCcc-cc-c--cCCCC----CchHHHHHHHHHHHhcCCcccccccceEEEEc-CCcHH
Confidence 67777777788999999988 66531 11 1 11111 11356777777777542 224 68888 78888
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec--CCCCCCCHHHHHHHHhhhc
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL--DDDGLLDIEALRSKLELYK 229 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~--~~~g~ld~e~L~~al~~~~ 229 (609)
++..+++.+. .+++|| .|++..+.|+++...++..|++++.++. ++++.+|+++|++++++.
T Consensus 107 a~~~~~~~~~-------------~~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 170 (397)
T 3fsl_A 107 ALKVGADFLK-------------RYFPES--GVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTL- 170 (397)
T ss_dssp HHHHHHHHHH-------------HHCTTC--CEEEESSCCHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTC-
T ss_pred HHHHHHHHHH-------------hcCCCC--eEEEeCCCchhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhC-
Confidence 8988865432 147888 5899999999999899999999999998 456789999999999842
Q ss_pred cCCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCccc-----ccCCCC-CCCCccEEEEcCCCCC
Q 038499 230 DAKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVE-----IDVRSG-QTDGYDAIFLSTHKFL 300 (609)
Q Consensus 230 ~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~~-----id~~~~-~~~~~D~v~~S~hK~l 300 (609)
.++++++++++++||||.+.+. ++|+++|++||+++|+|++++..... ..+... ...+.++++.|++|.+
T Consensus 171 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~ 249 (397)
T 3fsl_A 171 -QAGSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF 249 (397)
T ss_dssp -CTTCEEEECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT
T ss_pred -CCCCEEEEeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc
Confidence 2467899999999999999765 58999999999999999997654321 111110 0124468888999999
Q ss_pred CCC-CCcEEEEEe---chhhccCCCCCCccCCCceEeecccccccccccccccccccCCC-hhHHHHHHH-HHHH-HHHH
Q 038499 301 GGP-GSPGILLMT---KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT-PQVIQMIRA-ALAF-WVKE 373 (609)
Q Consensus 301 ggp-~g~G~L~~~---~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt-p~i~~~~~a-al~~-~~~~ 373 (609)
|.| .++|++++. ++. +..+... ... ..+...++ +.+.+.+.+ .+.- .+.+
T Consensus 250 ~~~G~riG~~~~~~~~~~~--~~~~~~~--------------------~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 306 (397)
T 3fsl_A 250 SLYGERVGGLSVMCEDAEA--AGRVLGQ--------------------LKA-TVRRNYSSPPNFGAQVVAAVLNDEALKA 306 (397)
T ss_dssp TCGGGCCEEEEEECSSHHH--HHHHHHH--------------------HHH-HHHTTTSSCCSHHHHHHHHHHTSHHHHH
T ss_pred cCcCCCeeEEEEecCCHHH--HHHHHHH--------------------HHH-HHHhccCCCCHHHHHHHHHHhcCHHHHH
Confidence 833 248999863 232 1111000 000 00111122 223332211 1110 0000
Q ss_pred --hcCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHH
Q 038499 374 --YIGHEVIKKQEETYIERALERLLPNQ---NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATL 448 (609)
Q Consensus 374 --~~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 448 (609)
....+.+.++.+++++++.+.|++++ ++.+..+ ..+++.|.- ++...+.+.
T Consensus 307 ~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~~--------------------~~~~~~~~~ 362 (397)
T 3fsl_A 307 SWLKEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLN----QRGMFSYTG--------------------LSAAQVDRL 362 (397)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTSCCTHHHH----CCSSEEECC--------------------CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeecC----CceEEEecC--------------------CCHHHHHHH
Confidence 22356777888888899999887654 4554433 234444432 235566666
Q ss_pred HhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 449 LNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 449 L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
| +++||.+++| + |||++.. ++++++.++++|+++
T Consensus 363 l-~~~gi~v~~g-----------------------------------~--Ris~~~~-~~~~i~~~~~~l~~~ 396 (397)
T 3fsl_A 363 R-EEFGVYLIAS-----------------------------------G--RMCVAGL-NTANVQRVAKAFAAV 396 (397)
T ss_dssp H-HTTCEECCTT-----------------------------------C--EEEGGGC-CTTTHHHHHHHHHHH
T ss_pred H-HhCCEEECCC-----------------------------------C--eEEEEec-CHhhHHHHHHHHHhh
Confidence 6 4579998732 2 9999744 557799999999875
|
| >3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum} | Back alignment and structure |
|---|
Probab=99.87 E-value=2e-21 Score=203.71 Aligned_cols=293 Identities=16% Similarity=0.110 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH---H
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL---S 197 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~---~ 197 (609)
....++++++++++|.+. . +++++|+. ++..++.++. .+||+.+|++++..|++... .
T Consensus 47 ~~~~~l~~~la~~~~~~~--~-i~~~~G~~-a~~~al~~~~---------------~~gd~~~vi~~~~~~~~~~~~~~~ 107 (357)
T 3lws_A 47 AIIEPFEQKFADVLGMDD--A-VFFPSGTM-AQQVALRIWS---------------DETDNRTVAYHPLCHLEIHEQDGL 107 (357)
T ss_dssp TTHHHHHHHHHHHHTCSE--E-EEESCHHH-HHHHHHHHHH---------------HHHTCCEEEECTTCHHHHSSTTHH
T ss_pred hHHHHHHHHHHHHhCCCc--E-EEecCcHH-HHHHHHHHHh---------------hcCCCcEEEecccceeeeeccchh
Confidence 346788999999999842 3 44457776 5555555542 45553368888888876543 3
Q ss_pred HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcc-ccccC---HHHHHHHHHHhCCeEEEecccc
Q 038499 198 WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVT-GIYSD---TRSIARLLHQYGGFACFDFAAS 273 (609)
Q Consensus 198 ~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~T-G~~~d---l~~I~~la~~~g~~vivD~A~~ 273 (609)
....|++++.++. +++.+|+++|+++ . +++++++++++||| |.+.+ +++|.++|++||+++|+|+++.
T Consensus 108 ~~~~g~~~~~v~~-~~~~~d~~~l~~~-~------~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~ 179 (357)
T 3lws_A 108 KELHPIETILVGA-ADRLMTLDEIKAL-P------DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARL 179 (357)
T ss_dssp HHHSSCEEEECSC-TTSCCCHHHHHTC-C------SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTH
T ss_pred hhccCcEEEEecC-CCCCcCHHHHhcC-c------CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchh
Confidence 4456999998884 4567999999876 1 38899999999998 99876 7889999999999999999875
Q ss_pred C---CcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccc
Q 038499 274 G---PYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE 350 (609)
Q Consensus 274 ~---~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (609)
. +......... ...+|+++.|+||+++||.| |+++.++++. +.+.... .
T Consensus 180 ~~~~~~~~~~~~~~-~~~~d~~~~s~sK~~~~~~g-g~~~~~~~~~--~~~~~~~------------------------~ 231 (357)
T 3lws_A 180 FEMLPYYEKTAAEI-AGLFDSIYISFYKGLGGIAG-AILAGPAAFC--QTARIWK------------------------R 231 (357)
T ss_dssp HHHHHHHTCCHHHH-HTTSSEEEEESSSTTCCSSC-EEEEECHHHH--HHHHHHH------------------------H
T ss_pred hhhhhhcCCChHHH-HhcCCEEEEeccccCCCCce-EEEEcCHHHH--HHHHHHH------------------------H
Confidence 1 1111111111 02568999999999988988 9999988872 2221100 0
Q ss_pred cccCC--ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEe-CCCCCCCcceEEEEeccCCCCCc
Q 038499 351 RESGG--TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKIL-GNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 351 r~~~g--tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~-~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
....+ +.+..+. +++. .+.+. .+.+ ++..+.++++.+.|+++|++++. .+ ...+++++.+.. ..
T Consensus 232 ~~~~~~~~~~~~~~--~~~~-~l~~~--~~~~-~~~~~~~~~l~~~L~~~~g~~~~~~~---~~~~~~~~~~~~-~~--- 298 (357)
T 3lws_A 232 RYGGDLISLYPYIV--SADY-YYELR--KDRM-GQYYEQAKQLAEQFNALPGVHTTPEV---PVSNMFHLHFDG-QA--- 298 (357)
T ss_dssp HTTCCCSCCHHHHH--HHHH-HHHHH--TTCH-HHHHHHHHHHHHHHHTSTTEEEESSS---CSSSEEEEEEES-CH---
T ss_pred HhcCCcccchHHHH--HHHH-HHHHH--HHHH-HHHHHHHHHHHHHHHhCCCCeeccCC---CcceEEEEEecC-Ch---
Confidence 00001 1122221 1111 11121 1222 23466778899999999999985 33 234555555543 10
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC--
Q 038499 428 LGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY-- 505 (609)
Q Consensus 428 ~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~-- 505 (609)
..+...+.+.|.+ .||.+++|..+. | ..+++|++++..
T Consensus 299 -----------~~~~~~~~~~l~~-~Gi~v~~g~~~~-~---------------------------~~~~~r~~i~~~~~ 338 (357)
T 3lws_A 299 -----------ADISPKLEQVQEE-TGLGFVGYLVDK-D---------------------------GYCSTEISVGDAYG 338 (357)
T ss_dssp -----------HHHHHHHHHHHHH-HCEESCSCCEEC-S---------------------------SEEEEEEEBCTTGG
T ss_pred -----------HHHHHHHHHHHHh-cCeEEecccccC-C---------------------------CceEEEEEecchhh
Confidence 0024677788865 599999885432 1 136899998733
Q ss_pred -CCHHHHHHHHHHHHHH
Q 038499 506 -MSNEEFEFTLEALEFI 521 (609)
Q Consensus 506 -~t~eeid~ll~al~~v 521 (609)
.++++++..++.|.+.
T Consensus 339 ~~~~~~l~~al~~l~~a 355 (357)
T 3lws_A 339 ELDQQTRDAGFARLRQA 355 (357)
T ss_dssp GSCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHh
Confidence 5778888888877664
|
| >1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=7e-22 Score=211.54 Aligned_cols=326 Identities=14% Similarity=0.095 Sum_probs=211.6
Q ss_pred EEecCCCCCCChHHHHHHHHH-hhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEE--eCChH
Q 038499 79 TYADHTASGRSLRYIENYIIN-NVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG------GQEDAMIF--CGSGT 149 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~-~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~------~~~~~vif--t~sGt 149 (609)
.|+|+.+..+.++.+.+++.+ .+.. ...+. |.. .....++|+.++++++. +++ +|++ | +|+
T Consensus 38 ~~~d~~~~~~~~~~v~~a~~~~~~~~--~~~~~--y~~----~~g~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~t-~g~ 107 (412)
T 1yaa_A 38 AYRDDNGKPWVLPSVKAAEKLIHNDS--SYNHE--YLG----ITGLPSLTSNAAKIIFGTQSDALQED-RVISVQS-LSG 107 (412)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHTCT--TCCCC--CCC----TTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-EHH
T ss_pred eeeCCCCCCCCcHHHHHHHHhhhcCc--ccccC--CCC----CCCcHHHHHHHHHHHhcCCCCCCCcc-eEEEEec-cch
Confidence 367777777788889999888 6642 11111 111 11245678888888732 354 7998 8 777
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec-CC-CCCCCHHHHHHHHhh
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL-DD-DGLLDIEALRSKLEL 227 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~-~~-~g~ld~e~L~~al~~ 227 (609)
++++..++..+. .+.+|| .|+++.+.|+++...++..|++++.++. ++ ++.+|+++|++++++
T Consensus 108 ~~a~~~~~~~~~-------------~~~~gd--~Vl~~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~ 172 (412)
T 1yaa_A 108 TGALHISAKFFS-------------KFFPDK--LVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQK 172 (412)
T ss_dssp HHHHHHHHHHHH-------------HHCTTC--CEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHH
T ss_pred HhHHHHHHHHHH-------------HhCCCC--EEEEeCCCCccHHHHHHHcCceEEEEeeecCCCCccCHHHHHHHHHh
Confidence 878887754432 136888 5888889999999889999999999998 43 677999999999974
Q ss_pred hccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc--------cc-cCCCCCCCC---ccEE
Q 038499 228 YKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV--------EI-DVRSGQTDG---YDAI 292 (609)
Q Consensus 228 ~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~--------~i-d~~~~~~~~---~D~v 292 (609)
. ...++++++++++||||.+.+ +++|+++|++||+++|+|++++.... ++ ++... .. .+++
T Consensus 173 ~--~~~~~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~ 248 (412)
T 1yaa_A 173 A--PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEK--LSTVSPVFV 248 (412)
T ss_dssp S--CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHH--TTTTCCEEE
T ss_pred C--CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhc--CCCCcceEE
Confidence 2 013557677999999999976 55789999999999999999753211 11 21111 12 4678
Q ss_pred EEcCCCCCCCCCC--cEEEE--E-----ech----hhccCCCCCCccCCCceEeecccccccccccccccccccCCChh-
Q 038499 293 FLSTHKFLGGPGS--PGILL--M-----TKA----LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ- 358 (609)
Q Consensus 293 ~~S~hK~lggp~g--~G~L~--~-----~~~----~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~- 358 (609)
+.|+||.+| |.| +|+++ . +++ + ++.+.. ..+....+++
T Consensus 249 ~~s~sK~~~-~~GlriG~~~~~~~~~~~~~~~~~~l--~~~l~~-------------------------~~~~~~~~~~~ 300 (412)
T 1yaa_A 249 CQSFAKNAG-MYGERVGCFHLALTKQAQNKTIKPAV--TSQLAK-------------------------IIRSEVSNPPA 300 (412)
T ss_dssp EEECTTTSC-CGGGCEEEEEEECCSCTTHHHHHHHH--HHHHHH-------------------------HHHTTTSSCCH
T ss_pred EeccCCCCC-CcCCcceEEEEEecCCCCCHHHHHHH--HHHHHH-------------------------HHhhccCCCCh
Confidence 889999998 534 79998 6 444 3 111110 0111122322
Q ss_pred HHHHH-HHHHHHHH-HH--hcCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeCCCCCCCcceEEEEeccCCCCCcCCCC
Q 038499 359 VIQMI-RAALAFWV-KE--YIGHEVIKKQEETYIERALERLLPNQ---NIKILGNTSTKRQAILSFNIHSSTINSSLGEN 431 (609)
Q Consensus 359 i~~~~-~aal~~~~-~~--~~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~ 431 (609)
+.+.+ .+++.-.. .+ ..+.+.+.++.+++++++.+.|++++ ++++..+ ..+++.|. .
T Consensus 301 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~--~---------- 364 (412)
T 1yaa_A 301 YGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPGNWDHIVN----QCGMFSFT--G---------- 364 (412)
T ss_dssp HHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCTHHHH----CCSSEEEC--C----------
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeeecc----CceEEEee--C----------
Confidence 22221 22221110 00 12466778888888999999887653 3555443 23454443 2
Q ss_pred CCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHH
Q 038499 432 TKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEF 511 (609)
Q Consensus 432 ~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eei 511 (609)
++..++...| +++||.+++ ++|||++. .+++|+
T Consensus 365 --------~~~~~~~~~l-~~~gi~v~~-------------------------------------~~Ris~~~-~~~~~i 397 (412)
T 1yaa_A 365 --------LTPQMVKRLE-ETHAVYLVA-------------------------------------SGRASIAG-LNQGNV 397 (412)
T ss_dssp --------CCHHHHHHHH-HHHCEECCT-------------------------------------TSEEEGGG-CCTTTH
T ss_pred --------CCHHHHHHHH-HhCCEEecc-------------------------------------CcEEEEcc-CCHhHH
Confidence 2345664544 557998872 36999984 589999
Q ss_pred HHHHHHHHHHHHh
Q 038499 512 EFTLEALEFIAIY 524 (609)
Q Consensus 512 d~ll~al~~v~~~ 524 (609)
++++++|+.+++.
T Consensus 398 ~~~~~~l~~~~~~ 410 (412)
T 1yaa_A 398 EYVAKAIDEVVRF 410 (412)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998764
|
| >1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-21 Score=208.29 Aligned_cols=331 Identities=15% Similarity=0.042 Sum_probs=212.0
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh-CC-----CCCCcEEE--eCChHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL-GG-----GQEDAMIF--CGSGTTA 151 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~-g~-----~~~~~vif--t~sGtta 151 (609)
|+|.....+.++.+.+++.+.+... ...+. |.. .....++|+.+++++ +. +++ +|++ | +|+++
T Consensus 40 ~~~~~~~~~~~~~v~~a~~~~~~~~-~~~~~--y~~----~~g~~~lr~~la~~~~~~~~~~~~~~-~v~~~~t-~gg~~ 110 (412)
T 1ajs_A 40 YRTDDCQPWVLPVVRKVEQRIANNS-SLNHE--YLP----ILGLAEFRTCASRLALGDDSPALQEK-RVGGVQS-LGGTG 110 (412)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHTCT-TCCCC--CCC----TTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-EHHHH
T ss_pred ecCCCCCccccHHHHHHHHHhhhCh-hhccC--CCC----CCCCHHHHHHHHHHHhcCCCCccCCC-cEEEEEC-CCcHH
Confidence 4455444566688889887765220 11111 111 112467888888888 43 455 8988 8 77888
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCC-----CceEEEECCCCccchHHHHHHcCce-EEEEecC--CCCCCCHHHHHH
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDE-----ERWVVFVGPHEHHSNLLSWRQSLAE-VVEIGLD--DDGLLDIEALRS 223 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-----d~~~Vlv~~~~h~s~~~~~~~~G~~-vv~v~~~--~~g~ld~e~L~~ 223 (609)
++..++..+. .+.+| | .|++..+.|+++...++..|++ ++.++.+ .++.+|+++|++
T Consensus 111 a~~~~~~~~~-------------~~~~g~~~~~d--~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~ 175 (412)
T 1ajs_A 111 ALRIGAEFLA-------------RWYNGTNNKDT--PVYVSSPTWENHNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLS 175 (412)
T ss_dssp HHHHHHHHHH-------------HHSSSSSCCCS--CEEEEESCCTHHHHHHHHTTCSCEEEEECEETTTTEECHHHHHH
T ss_pred HHHHHHHHHH-------------HhCcCcCCCCC--eEEEcCCCcHHHHHHHHHcCCceeEEEeeecCCCCccCHHHHHH
Confidence 8888765432 13677 7 5888889999998889999999 9999984 456789999999
Q ss_pred HHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCC-cc-----cccCCCCC-CCCccEEE
Q 038499 224 KLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-YV-----EIDVRSGQ-TDGYDAIF 293 (609)
Q Consensus 224 al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~-~~-----~id~~~~~-~~~~D~v~ 293 (609)
++++. .++++++++++++||||.+.+ +++|+++|++||+++|+|+++... +. ...+.... ....++++
T Consensus 176 ~l~~~--~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 253 (412)
T 1ajs_A 176 DLENA--PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCA 253 (412)
T ss_dssp HHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEE
T ss_pred HHHhC--CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEE
Confidence 99742 136788889999999999976 457999999999999999996532 21 11111110 01234888
Q ss_pred EcCCCCCCCCC-CcEEEEE---echhhc--cCCCCCCccCCCceEeecccccccccccccccccccCCC-hhHHHHH-HH
Q 038499 294 LSTHKFLGGPG-SPGILLM---TKALYQ--LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT-PQVIQMI-RA 365 (609)
Q Consensus 294 ~S~hK~lggp~-g~G~L~~---~~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt-p~i~~~~-~a 365 (609)
.|+||.+|+++ .+|++++ ++++.. +..+.. ..+...++ +.+.+.+ .+
T Consensus 254 ~s~sK~~~~~G~riG~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~a~~~ 308 (412)
T 1ajs_A 254 QSFSKNFGLYNERVGNLTVVAKEPDSILRVLSQMQK-------------------------IVRVTWSNPPAQGARIVAR 308 (412)
T ss_dssp EECTTTSCCGGGCEEEEEEECSSHHHHHHHHHHHHH-------------------------HHHTTTSSCCSHHHHHHHH
T ss_pred EecccccCCCCcceEEEEEecCCHHHHHHHHHHHHH-------------------------HHhcccCCCChHHHHHHHH
Confidence 99999998532 3899999 665310 111100 01111222 2222221 22
Q ss_pred HHHHHH-HH--hcCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCC
Q 038499 366 ALAFWV-KE--YIGHEVIKKQEETYIERALERLLPNQ---NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP 439 (609)
Q Consensus 366 al~~~~-~~--~~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
++.... .+ ....+.+.++.+++++++.+.|++++ ++++..+ ..+++.|. .
T Consensus 309 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~--~------------------ 364 (412)
T 1ajs_A 309 TLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTPGTWNHITD----QIGMFSFT--G------------------ 364 (412)
T ss_dssp HHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHH----CCSSEEEC--C------------------
T ss_pred HHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCeeEEcC----CCceEEEe--C------------------
Confidence 222110 00 12456778888889999999998763 3555433 23454443 2
Q ss_pred CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 440 LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 440 l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
++...+...| +++||.+++ + +||+++. .+++|+++++++|+
T Consensus 365 ~~~~~~~~~l-~~~gv~v~~------------------------------------~-~Ris~~~-~~~~~i~~~~~~l~ 405 (412)
T 1ajs_A 365 LNPKQVEYLI-NQKHIYLLP------------------------------------S-GRINMCG-LTTKNLDYVATSIH 405 (412)
T ss_dssp CCHHHHHHHH-HTTCEECCT------------------------------------T-SEEEGGG-CCTTTHHHHHHHHH
T ss_pred CCHHHHHHHH-HhCCEEecC------------------------------------C-cEEEeee-CCHHHHHHHHHHHH
Confidence 2344555555 457998872 2 4999984 58999999999999
Q ss_pred HHHHh
Q 038499 520 FIAIY 524 (609)
Q Consensus 520 ~v~~~ 524 (609)
++++.
T Consensus 406 ~~l~~ 410 (412)
T 1ajs_A 406 EAVTK 410 (412)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 98765
|
| >3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-22 Score=211.12 Aligned_cols=289 Identities=15% Similarity=0.115 Sum_probs=189.7
Q ss_pred HHHHHHHHHHhCC-----CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCC--ceEEEECCCCccchHH
Q 038499 124 HEASNYIKKCLGG-----GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE--RWVVFVGPHEHHSNLL 196 (609)
Q Consensus 124 ~e~r~~ia~~~g~-----~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd--~~~Vlv~~~~h~s~~~ 196 (609)
.++|+.++++++. .++++|++| +|+++++..++.++ +++|| ...|+++.+.|+.+..
T Consensus 71 ~~lr~aia~~~~~~g~~~~~~~~i~~t-~G~~~al~~~~~~l---------------~~~Gd~~~~~Vlv~~P~y~~~~~ 134 (391)
T 3bwn_A 71 PELEDAIKDLHGVVGNAATEDRYIVVG-TGSTQLCQAAVHAL---------------SSLARSQPVSVVAAAPFYSTYVE 134 (391)
T ss_dssp HHHHHHHHHHHHHHCSBCCSSSEEEEE-EHHHHHHHHHHHHH---------------HHTSSSSSEEEEECSSCCTHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCCCeEEEe-CChHHHHHHHHHHh---------------cCCCCCCcceEEEcCCCchhHHH
Confidence 5677777777762 343489998 89999999998877 36777 1149999999999999
Q ss_pred HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 197 SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.++..|++++.++++.++ ++ . ++++++++++++||||.+.+ +|++.++.+++++|+|++++.+.
T Consensus 135 ~~~~~g~~~~~~~~d~~~-l~--------~-----~~~k~v~l~~p~NPtG~~~~--~l~~~~~~~~~~ii~De~y~~~~ 198 (391)
T 3bwn_A 135 ETTYVRSGMYKWEGDAWG-FD--------K-----KGPYIELVTSPNNPDGTIRE--TVVNRPDDDEAKVIHDFAYYWPH 198 (391)
T ss_dssp HHHTTCBTTEEEEEESTT-CC--------C-----CSCEEEEEESSCTTTCCCCC--CCC-----CCCEEEEECTTCSTT
T ss_pred HHHHcCCeEEEecCCHHH-cC--------C-----CCCEEEEECCCCCCCchhHH--HHHHHhhcCCCEEEEeCCCCCCC
Confidence 999999999999887543 21 1 47899999999999999986 55442233349999999987532
Q ss_pred -ccccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEE-echhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 277 -VEIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLM-TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 277 -~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~-~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
.++.. ..+.++++.|+||.+|.|+ .+|++++ ++++ ++.+... .....
T Consensus 199 ~~~l~~----~~~~~i~~~S~SK~~g~~GlRiG~~~~~~~~l--~~~l~~~------------------------~~~~~ 248 (391)
T 3bwn_A 199 YTPITR----RQDHDIMLFTFSKITGHAGSRIGWALVKDKEV--AKKMVEY------------------------IIVNS 248 (391)
T ss_dssp TSCCCC----CBCCSEEEEEHHHHHSCGGGCEEEEEECCHHH--HHHHHHH------------------------HHHHH
T ss_pred CCcccc----CCCCeEEEEechhhcCCCccceEEEEecCHHH--HHHHHHH------------------------hcccc
Confidence 12221 1256899999999998443 3799998 6666 2222110 01111
Q ss_pred CCChhHHHHHH-HHHHHHHH-------HhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCC---------CCcceEE
Q 038499 354 GGTPQVIQMIR-AALAFWVK-------EYIGHEVIKKQEETYIERALERLLPNQNIKILGNTST---------KRQAILS 416 (609)
Q Consensus 354 ~gtp~i~~~~~-aal~~~~~-------~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~---------~r~~~~~ 416 (609)
.+++.+.+.+. +++.-... .....+.++++.++.++++.+.|+++|++++..+... +..+.+.
T Consensus 249 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~~~~~~~~g~~~ 328 (391)
T 3bwn_A 249 IGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYFGKSLESYPAFA 328 (391)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTTTEEECCCCSEE
T ss_pred cCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccccccCCCcceEE
Confidence 23334433321 12211000 0234677888889999999999998888887654211 1122233
Q ss_pred EEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 417 FNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
+.-.+ +...+.+.| ++.||.+++|..|.. .++
T Consensus 329 ~~~~~-------------------~~~~~~~~l-~~~gV~v~pg~~fg~----------------------------~~~ 360 (391)
T 3bwn_A 329 WLGTK-------------------EETDLVSEL-RRHKVMSRAGERCGS----------------------------DKK 360 (391)
T ss_dssp EEEES-------------------SSCCHHHHH-HHTTEECEEGGGGTC----------------------------CTT
T ss_pred EecCC-------------------cHHHHHHHH-HHCCEEEccCCCCCC----------------------------CCC
Confidence 33222 113455666 457999999887741 148
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 497 WTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
++|||++ ++++++++++++|+++++.
T Consensus 361 ~iRis~~--~~~e~i~~~~~~L~~~~~~ 386 (391)
T 3bwn_A 361 HVRVSML--SREDVFNVFLERLANMKLI 386 (391)
T ss_dssp EEEEESC--SCHHHHHHHHHHHHSCC--
T ss_pred EEEEEec--CCHHHHHHHHHHHHHHHHh
Confidence 9999998 4899999999999876543
|
| >3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.2e-20 Score=198.80 Aligned_cols=348 Identities=12% Similarity=-0.018 Sum_probs=205.2
Q ss_pred EEecCCCCCC------ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTASGR------SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~g~------~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
-|+|..++.. .++.|.+++.+.+... .+.. ..........+++++++++++...+++++|+++|+. +
T Consensus 44 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~-----~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggse-a 116 (439)
T 3dxv_A 44 ELIDLSGAWGAASLGYGHPAIVAAVSAAAANP-AGAT-----ILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSD-A 116 (439)
T ss_dssp EEEESSTTTTTCTTCBSCHHHHHHHHHHHHSC-SCSC-----SSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHH-H
T ss_pred EEEECCCchhhccCCCCCHHHHHHHHHHHHhc-cCcc-----ccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHH-H
Confidence 4888886654 6788999998887653 1111 111234567889999999997655238999955555 5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCce--------------EEEEecCCCCCC--
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAE--------------VVEIGLDDDGLL-- 216 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~--------------vv~v~~~~~g~l-- 216 (609)
+..++.++- .+.+++. +|+..+..|..........+.. +..++.+..+..
T Consensus 117 ~~~al~~~~-------------~~~~~~~-vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (439)
T 3dxv_A 117 NEAAYRAIV-------------KATGRSG-VIAFAGAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPT 182 (439)
T ss_dssp HHHHHHHHH-------------HHHSCCE-EEEETTCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTT
T ss_pred HHHHHHHHH-------------HHhCCCE-EEEECCCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCccccccc
Confidence 665555421 0123332 5555555555544444333322 233443322222
Q ss_pred ---CHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Cccc--ccCCCCCC
Q 038499 217 ---DIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVE--IDVRSGQT 286 (609)
Q Consensus 217 ---d~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~--id~~~~~~ 286 (609)
|+++|++++++ ...+++++++++.++|++|.+.+ +++|.++|++||+++|+|++++. +... ..+... .
T Consensus 183 ~~~d~~~le~~l~~-~~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~-~ 260 (439)
T 3dxv_A 183 GDAILTLLTEKLAA-VPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHE-G 260 (439)
T ss_dssp SHHHHHHHHHHHHT-SCTTCEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGT-T
T ss_pred HHHHHHHHHHHHHh-cCCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhc-C
Confidence 69999999941 11157889999999999999998 99999999999999999999863 1111 111111 1
Q ss_pred CCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHH
Q 038499 287 DGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAA 366 (609)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aa 366 (609)
...|++ |++|.+++...+|++++++++ ++.+.+...+ ...+.+.......++
T Consensus 261 ~~~di~--s~sK~~~~G~riG~~~~~~~~--~~~~~~~~~~------------------------~t~~~~~~~~aa~aa 312 (439)
T 3dxv_A 261 FVPDIL--VLGKGLGGGLPLSAVIAPAEI--LDCASAFAMQ------------------------TLHGNPISAAAGLAV 312 (439)
T ss_dssp CCCSEE--EECGGGGTTSCCEEEEEEHHH--HTSCSSSSCC------------------------TTTTCHHHHHHHHHH
T ss_pred CCCCEE--EEcchhcCCcceEEEEECHHH--HhhhcCCCcC------------------------CCcccHHHHHHHHHH
Confidence 135776 556999864468999999988 4444332100 001122222222333
Q ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHhC----CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCCh
Q 038499 367 LAFWVKEYIGHEVIKKQEETYIERALERLL----PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHG 442 (609)
Q Consensus 367 l~~~~~~~~g~~~i~~~~~~l~~~~~~~L~----~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (609)
+... +. +.+.++.+++.+++++.|. .++.+....+ ...++.+.+.. .... ........
T Consensus 313 l~~~--~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~-~~~~--------~~~~~~~~ 374 (439)
T 3dxv_A 313 LETI--DR---DDLPAMAERKGRLLRDGLSELAKRHPLIGDIRG----RGLACGMELVC-DRQS--------REPARAET 374 (439)
T ss_dssp HHHH--HH---TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEEE-ETTT--------TEECHHHH
T ss_pred HHHH--Hh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEEec-Cccc--------cCCCHHHH
Confidence 3332 11 2334444445555555443 3455544322 33455555432 1000 00000135
Q ss_pred HHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 443 PFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 443 ~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
..+.+.|.++ ||.++++.. .++++||++++..|++|+++++++|++++
T Consensus 375 ~~~~~~l~~~-Gv~v~~~~~-------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l 422 (439)
T 3dxv_A 375 AKLIYRAYQL-GLVVYYVGM-------------------------------NGNVLEFTPPLTITETDIHKALDLLDRAF 422 (439)
T ss_dssp HHHHHHHHHH-TEECEEEST-------------------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHC-CcEEeecCC-------------------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6778888765 999986521 14899999999999999999999999999
Q ss_pred Hhccc
Q 038499 523 IYGQR 527 (609)
Q Consensus 523 ~~~~~ 527 (609)
+...+
T Consensus 423 ~~~~~ 427 (439)
T 3dxv_A 423 SELSA 427 (439)
T ss_dssp HTGGG
T ss_pred HHHhc
Confidence 87655
|
| >2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-19 Score=194.84 Aligned_cols=329 Identities=14% Similarity=0.044 Sum_probs=203.5
Q ss_pred eEEecCCCCC------CC-hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC-CCCcEEEeCChH
Q 038499 78 LTYADHTASG------RS-LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG-QEDAMIFCGSGT 149 (609)
Q Consensus 78 ~vyld~~a~g------~~-~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~-~~~~vift~sGt 149 (609)
..|+|+.++. +. ++.|.+++.+.+.... ......+ ......++++.+++++|.+ ++ +|+|+ +|+
T Consensus 42 ~~~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~~~-~~~~~~~-----~~~~~~~l~~~la~~~~~~~~~-~v~~~-~gg 113 (419)
T 2eo5_A 42 NKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLA-HAAANDF-----YNIPQLELAKKLVTYSPGNFQK-KVFFS-NSG 113 (419)
T ss_dssp CEEEESSGGGGTTTTCBSCCHHHHHHHHHHHTTSC-CCSCSCS-----CCHHHHHHHHHHHHHSSCSSCE-EEEEE-SSH
T ss_pred CEEEEccCChhhhccCCCCCHHHHHHHHHHHhhCc-ccccccc-----CCHHHHHHHHHHHHhCCCCcCC-EEEEe-Cch
Confidence 3588886543 34 7889999998886431 1110001 1234567888999999987 55 89998 666
Q ss_pred HHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCcc-chHHHHHHc-------------CceEEEEecCCCCC
Q 038499 150 TAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHH-SNLLSWRQS-------------LAEVVEIGLDDDGL 215 (609)
Q Consensus 150 taal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~-s~~~~~~~~-------------G~~vv~v~~~~~g~ 215 (609)
++++..+++++. ..+++ .|++....|| +........ +.+++.++.+.+..
T Consensus 114 ~ea~~~ai~~~~--------------~~~~~--~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 177 (419)
T 2eo5_A 114 TEAIEASIKVVK--------------NTGRK--YIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYR 177 (419)
T ss_dssp HHHHHHHHHHHH--------------TTSCC--EEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSS
T ss_pred HHHHHHHHHHHH--------------HhhCC--cEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCcccc
Confidence 667887776541 01256 4555555444 444333222 23678888765322
Q ss_pred ----------------CCHHHHH-HHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc-
Q 038499 216 ----------------LDIEALR-SKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS- 273 (609)
Q Consensus 216 ----------------ld~e~L~-~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~- 273 (609)
+|+++|+ +++++....+++++++++..+|+||.+.+ +++|.++|++||+++|+|++++
T Consensus 178 ~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~ 257 (419)
T 2eo5_A 178 NPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMG 257 (419)
T ss_dssp CTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred ccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccC
Confidence 4688999 88874211125667777766678998777 9999999999999999999987
Q ss_pred CCcccc--cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccc
Q 038499 274 GPYVEI--DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE 350 (609)
Q Consensus 274 ~~~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (609)
.+.... .+... ....|+++ ++|.+|++ .++|++++++++ + .+ ....+ ++
T Consensus 258 ~g~~g~~~~~~~~-~~~~d~~t--~sK~~~~G~~riG~~~~~~~~--~-~~-~~~~~-~t-------------------- 309 (419)
T 2eo5_A 258 LGRTGKLFAIENF-NTVPDVIT--LAKALGGGIMPIGATIFRKDL--D-FK-PGMHS-NT-------------------- 309 (419)
T ss_dssp TTTTSSSSGGGGG-TCCCSEEE--ECGGGGTTTSCCEEEEEEGGG--C-CC--------C--------------------
T ss_pred CccCcchhhHHhc-CCCCCEEE--ecccccCCccceEEEEEchHh--h-cC-CcccC-CC--------------------
Confidence 332211 11111 11457664 55999876 679999999987 4 33 10000 00
Q ss_pred cccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCC
Q 038499 351 RESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGE 430 (609)
Q Consensus 351 r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~ 430 (609)
..+.+.......+++... + .+.++.+++++++.+.|.++ +....+ ...++++.+.+ ..
T Consensus 310 --~~~n~~~~~aa~aal~~~--~-----~~~~~~~~~~~~l~~~L~~~--~~~~~~----~g~~~~i~~~~-~~------ 367 (419)
T 2eo5_A 310 --FGGNALACAIGSKVIDIV--K-----DLLPHVNEIGKIFAEELQGL--ADDVRG----IGLAWGLEYNE-KK------ 367 (419)
T ss_dssp --CCCCHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHTTS--SSEEEE----ETTEEEEECSC-HH------
T ss_pred --CCCCHHHHHHHHHHHHHH--H-----HHHHHHHHHHHHHHHHHHHh--hhheEe----eeEEEEEEEec-Cc------
Confidence 011222222223333322 1 26788888999999999876 211111 23444444322 10
Q ss_pred CCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHH
Q 038499 431 NTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEE 510 (609)
Q Consensus 431 ~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ee 510 (609)
.... +.+.|.+ .||.++++. ++++||++++.+|++|
T Consensus 368 ---------~~~~-~~~~l~~-~Gv~v~~~~---------------------------------~~~lRis~~~~~t~e~ 403 (419)
T 2eo5_A 368 ---------VRDR-IIGESFK-RGLLLLPAG---------------------------------RSAIRVIPPLVISEEE 403 (419)
T ss_dssp ---------HHHH-HHHHHHH-TTEECEEET---------------------------------TTEEEECCCTTCCHHH
T ss_pred ---------cHHH-HHHHHHH-CCCEEecCC---------------------------------CCEEEEECCCCCCHHH
Confidence 0244 7777765 699998531 2789999999999999
Q ss_pred HHHHHHHHHHHHHh
Q 038499 511 FEFTLEALEFIAIY 524 (609)
Q Consensus 511 id~ll~al~~v~~~ 524 (609)
+++++++|+++++.
T Consensus 404 i~~~l~~l~~~l~~ 417 (419)
T 2eo5_A 404 AKQGLDILKKVIKV 417 (419)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999998764
|
| >4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.1e-21 Score=210.68 Aligned_cols=331 Identities=17% Similarity=0.137 Sum_probs=212.9
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC-----CCC--cEEEeCChHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG-----QED--AMIFCGSGTTAA 152 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~-----~~~--~vift~sGttaa 152 (609)
|+|.....+.++.|.+++.+.+... ..+. |.... ...++|+.++++++.. ..+ +|++| +|++++
T Consensus 59 y~d~~~~~~~~~~v~~a~~~~~~~~--~~~~--Y~~~~----g~~~lr~~ia~~l~~~~~~~~~~~~~~i~~t-~G~t~a 129 (420)
T 4f4e_A 59 YTNEDGKIPLLRAVRDAEKARVEAG--LPRG--YLPID----GIAAYDASVQKLLLGDDSPLIAAGRVVTAQA-LGGTGA 129 (420)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHTC--CCCC--CCCTT----CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE-EHHHHH
T ss_pred eECCCCCccCcHHHHHHHHHHhccC--CCCC--CCCCC----CcHHHHHHHHHHhcCCCccccccCceEEEEC-CccHHH
Confidence 6777777778899999998877541 1111 11111 1355677777776432 123 68898 788889
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEec--CCCCCCCHHHHHHHHhhhcc
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGL--DDDGLLDIEALRSKLELYKD 230 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~--~~~g~ld~e~L~~al~~~~~ 230 (609)
+..+++.+. .+++|| .|+++.+.|+++...++..|++++.++. +.++.+|+++|++++++.
T Consensus 130 l~~~~~~~~-------------~~~~gd--~Vlv~~p~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-- 192 (420)
T 4f4e_A 130 LKIGADFLR-------------TLNPKA--KVAISDPSWENHRALFDMAGFEVVAYPYYDAKTNGVNFDGMLAALNGY-- 192 (420)
T ss_dssp HHHHHHHHH-------------HHCTTC--CEEEEESCCHHHHHHHHHTTCCEEEEECEETTTTEECHHHHHHHHTTC--
T ss_pred HHHHHHHHH-------------HhCCCC--EEEEeCCCcHhHHHHHHHcCCeEEEeeeeccccCccCHHHHHHHHHhC--
Confidence 988865432 147888 5999999999999899999999999998 346789999999999742
Q ss_pred CCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCccc-----ccCCCC-CCCCccEEEEcCCCCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE-----IDVRSG-QTDGYDAIFLSTHKFLG 301 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~-----id~~~~-~~~~~D~v~~S~hK~lg 301 (609)
.++++++++++++||||.+.+ +++|+++|++||+++|+|++++..... ..+... ...+.++++.|++|.+|
T Consensus 193 ~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~ 272 (420)
T 4f4e_A 193 EPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFS 272 (420)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTT
T ss_pred CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCc
Confidence 246889999999999999976 557899999999999999997643321 111100 01245788899999998
Q ss_pred CC-CCcEEEEE---echhhccCCCCCCccCCCceEeecccccccccccccccccc-cCCChhHHHHHHH-HHHHH-HHH-
Q 038499 302 GP-GSPGILLM---TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE-SGGTPQVIQMIRA-ALAFW-VKE- 373 (609)
Q Consensus 302 gp-~g~G~L~~---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~-~~gtp~i~~~~~a-al~~~-~~~- 373 (609)
.| .++|++++ ++++ +..+... +.. ..+. ..+.+.+.+.+.+ .+.-. +.+
T Consensus 273 ~~G~RiG~~~~~~~~~~~--~~~~~~~--------------------~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 329 (420)
T 4f4e_A 273 LYGERVGALSIITDSKDE--AARVLSQ--------------------LKR-VIRTNYSNPPTHGGAIVAAVLASPELRAS 329 (420)
T ss_dssp CGGGCEEEEEEECSSHHH--HHHHHHH--------------------HHH-HHHTTTSSCCSHHHHHHHHHHHCHHHHHH
T ss_pred CcCCCcEEEEEEcCCHHH--HHHHHHH--------------------HHH-HHhcccCCCCHHHHHHHHHHhcCHHHHHH
Confidence 33 34899875 2232 1110000 000 0001 1122333332221 11110 000
Q ss_pred -hcCHHHHHHHHHHHHHHHHHHhCCC---CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHH
Q 038499 374 -YIGHEVIKKQEETYIERALERLLPN---QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLL 449 (609)
Q Consensus 374 -~~g~~~i~~~~~~l~~~~~~~L~~~---p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L 449 (609)
....+.++++.+++++++.+.|+++ +++.+..+ ..++++|.- ++...+.+.|
T Consensus 330 ~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~~~~~~--------------------~~~~~~~~~l 385 (420)
T 4f4e_A 330 WVQELGEMRDRIRAMRNGLVERLKAAGIERDFSFINA----QRGMFSYSG--------------------LTSAQVDRLR 385 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHHH----SCSSEEECC--------------------CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceeECC----CccEEEEeC--------------------CCHHHHHHHH
Confidence 1235677788888899999998876 35555433 234554432 2455666666
Q ss_pred hhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 450 NDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 450 ~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
+++||.+++| + |+|++. .+++++++++++|++++
T Consensus 386 -~~~gI~v~~~-----------------------------------~--Ris~~~-~~~~~i~~~~~~l~~~l 419 (420)
T 4f4e_A 386 -EEFGIYAVST-----------------------------------G--RICVAA-LNTRNLDVVANAIAAVL 419 (420)
T ss_dssp -HHHCEECCTT-----------------------------------S--EEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred -HhCCEEecCC-----------------------------------C--eEEEec-CCHHHHHHHHHHHHHHh
Confidence 4569988731 2 999974 36677999999999875
|
| >2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.2e-19 Score=192.00 Aligned_cols=334 Identities=17% Similarity=0.128 Sum_probs=207.1
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
.|+|..++ |-.++.|.+++.+.+... .+.+.. + ......++++.+++++|. ++|+|+++|+. +
T Consensus 77 ~ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~~-~~~~~~-~-----~~~~~~~l~~~la~~~g~---~~v~~~~sGse-A 145 (439)
T 2oat_A 77 KYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL-TLTSRA-F-----YNNVLGEYEEYITKLFNY---HKVLPMNTGVE-A 145 (439)
T ss_dssp EEEESSGGGGTTTTCBTCHHHHHHHHHHHTTC-SCCCTT-S-----EESSHHHHHHHHHHHHTC---SEEEEESSHHH-H
T ss_pred EEEEccCCcccccCCCCCHHHHHHHHHHHHhc-CcccCc-c-----CCHHHHHHHHHHHHhcCC---CEEEEeCCHHH-H
Confidence 58887662 226788999998888653 111111 1 123467788899999974 38999955555 5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccc-hHHHHHHcC------------ceEEEEecCCCCCCCH
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHS-NLLSWRQSL------------AEVVEIGLDDDGLLDI 218 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s-~~~~~~~~G------------~~vv~v~~~~~g~ld~ 218 (609)
+..++.++.. .. .-...+.+| + .|++.+..||+ ....+...| .+++.++.+ |+
T Consensus 146 ~~~al~~~~~-~~-----~~~~g~~~g~~--~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~ 212 (439)
T 2oat_A 146 GETACKLARK-WG-----YTVKGIQKYKA--KIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYN-----DL 212 (439)
T ss_dssp HHHHHHHHHH-HH-----HHTTCCCTTCC--EEEEETTCCCCSSHHHHTTCCCHHHHTTSCSCCTTEEEECSS-----CH
T ss_pred HHHHHHHHHH-Hh-----hhccCCCCCCC--eEEEEcCCCCCCCHhHhhcCCChhcccCCCCCCCCeEEeCCC-----CH
Confidence 6666554310 00 000001345 4 45555555554 444444444 467777653 89
Q ss_pred HHHHHHHhhhccCCCceEEEEecccCcccccc----CHHHHHHHHHHhCCeEEEeccccC-Ccccc--cCCCCCCCCccE
Q 038499 219 EALRSKLELYKDAKRPILGSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAASG-PYVEI--DVRSGQTDGYDA 291 (609)
Q Consensus 219 e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~----dl~~I~~la~~~g~~vivD~A~~~-~~~~i--d~~~~~~~~~D~ 291 (609)
++|+++++. +++++++++.+++++|.+. ++++|.++|++||+++|+|+++.. +.... .+.... -..|+
T Consensus 213 ~~le~~l~~----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~g~~g~~~~~~~~~-~~~Di 287 (439)
T 2oat_A 213 PALERALQD----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYEN-VRPDI 287 (439)
T ss_dssp HHHHHHTTS----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGT-CCCSE
T ss_pred HHHHHHhCC----CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCcchhHHHhC-CCCcE
Confidence 999999952 5788888888888899876 699999999999999999999853 21111 111110 14587
Q ss_pred EEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHH
Q 038499 292 IFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFW 370 (609)
Q Consensus 292 v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~ 370 (609)
+ +++|.++|. ..+|++++++++ ++.+.+...++ + ..+.|.......++++..
T Consensus 288 ~--t~sK~l~~G~~~~G~v~~~~~~--~~~l~~~~~~~-t----------------------~~~~~~~~aaa~aal~~~ 340 (439)
T 2oat_A 288 V--LLGKALSGGLYPVSAVLCDDDI--MLTIKPGEHGS-T----------------------YGGNPLGCRVAIAALEVL 340 (439)
T ss_dssp E--EECGGGGTTSSCCEEEEECHHH--HTTSCTTSSCC-S----------------------STTCHHHHHHHHHHHHHH
T ss_pred E--EecccccCCCCCeEEEEECHHH--HhccCCCCccc-C----------------------CCcCHHHHHHHHHHHHHH
Confidence 6 566999864 358999999988 44543321110 0 022332222233444433
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHh
Q 038499 371 VKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLN 450 (609)
Q Consensus 371 ~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 450 (609)
+. +.+.++.+++.+++.+.|+++ ++.++... .....++++.+.. .. ..+...+.+.|.
T Consensus 341 --~~---~~~~~~~~~~~~~l~~~L~~l-~~~~~~~~-~~~g~~~~v~l~~-~~--------------~~~~~~l~~~l~ 398 (439)
T 2oat_A 341 --EE---ENLAENADKLGIILRNELMKL-PSDVVTAV-RGKGLLNAIVIKE-TK--------------DWDAWKVCLRLR 398 (439)
T ss_dssp --HH---TTHHHHHHHHHHHHHHHHTTS-CTTTEEEE-EEETTEEEEEECC-CS--------------SCCHHHHHHHHH
T ss_pred --hh---hhHHHHHHHHHHHHHHHHHHh-cCCCcEEE-EeeeeEEEEEEec-Cc--------------cHHHHHHHHHHH
Confidence 21 245678888899999999876 22211100 0133455555443 10 024668888887
Q ss_pred hhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 451 DLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 451 ~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+ .||.++++ .++++|+++++.+|++|+++++++|+++++.
T Consensus 399 ~-~Gv~v~~~---------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 438 (439)
T 2oat_A 399 D-NGLLAKPT---------------------------------HGDIIRFAPPLVIKEDELRESIEIINKTILS 438 (439)
T ss_dssp H-TTEECCBS---------------------------------SSSEEEECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred H-CCeEEecC---------------------------------CCCEEEEECccCCCHHHHHHHHHHHHHHHHh
Confidence 6 59998842 1378999999999999999999999988753
|
| >2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=212.44 Aligned_cols=358 Identities=13% Similarity=0.072 Sum_probs=207.6
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
..|+|+.+..+. +.|.+++.+.+.. +.. .+.. .....++++++++++|. ++++||++|+ +++..++
T Consensus 41 ~~ylD~~~~~~~-~~v~~a~~~~l~~--~~~---~y~~----~~~~~~l~~~la~~~~~---~~v~~t~~gt-~A~~~al 106 (467)
T 2oqx_A 41 DVFIDLLTDSGT-GAVTQSMQAAMMR--GDE---AYSG----SRSYYALAESVKNIFGY---QYTIPTHQGR-GAEQIYI 106 (467)
T ss_dssp GCSEECSCCSSC-SCCCHHHHHHTTS--CCC---CSSS----CHHHHHHHHHHHHHHCC---SEEEEEC--C-CSHHHHH
T ss_pred CeeEecccCCCc-HHHHHHHHHHhcc--Ccc---eecc----CchhHHHHHHHHHHhCc---CcEEEcCCcH-HHHHHHH
Confidence 359999877766 6777777776542 111 1111 12356789999999987 3789996565 4566666
Q ss_pred HHhcccchhhHHHHHHhhhcC-----C----CceEEEECCCCccch-HHHHHHcCceEEEE------ecC----CCCCCC
Q 038499 158 EVMGIAVPSILREKLIKCLRD-----E----ERWVVFVGPHEHHSN-LLSWRQSLAEVVEI------GLD----DDGLLD 217 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~-----g----d~~~Vlv~~~~h~s~-~~~~~~~G~~vv~v------~~~----~~g~ld 217 (609)
.++. ++ | |. |+++ ..|+.. ...+...|+.++.. +.+ .++.+|
T Consensus 107 ~~~~---------------~~~~~~~G~~~~d~--Ii~~-~~h~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 168 (467)
T 2oqx_A 107 PVLI---------------KKREQEKGLDRSKM--VAFS-NYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFD 168 (467)
T ss_dssp HHHH---------------HHHHHHHCCCTTTC--EEEE-SSCCHHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBC
T ss_pred HHHh---------------ccccccCCCCccce--EEec-ccccccchhhhhccCcceeeccccccccCCCCCCccCCcC
Confidence 5542 34 6 64 6666 456443 33344456666543 222 346789
Q ss_pred HHHHHHHHhhhccCCCceEEEEecccCcc-ccccC---HHHHHHHHHHhCCeEEEeccccC-----------CcccccCC
Q 038499 218 IEALRSKLELYKDAKRPILGSFSACSNVT-GIYSD---TRSIARLLHQYGGFACFDFAASG-----------PYVEIDVR 282 (609)
Q Consensus 218 ~e~L~~al~~~~~~~~~~lv~~s~~sn~T-G~~~d---l~~I~~la~~~g~~vivD~A~~~-----------~~~~id~~ 282 (609)
+++|+++|++.. .+++++|++++++|+| |.+.+ +++|.++|++||+++|+|++++. ++...+..
T Consensus 169 ~~~Le~~i~~~~-~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~ 247 (467)
T 2oqx_A 169 LEGLERGIEEVG-PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIE 247 (467)
T ss_dssp HHHHHHHHHHHC-GGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHH
T ss_pred HHHHHHHHHhcC-CCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHH
Confidence 999999998421 1268999999999998 77755 67899999999999999987655 22222221
Q ss_pred CCC---CCCccEEEEcCCCCCCCCCCcEEEEEech-hhc-cCCCCCCc-cCCCceEeecccccccccccccccccccCCC
Q 038499 283 SGQ---TDGYDAIFLSTHKFLGGPGSPGILLMTKA-LYQ-LGSFPPST-CGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 283 ~~~---~~~~D~v~~S~hK~lggp~g~G~L~~~~~-~~~-l~~~~p~~-~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
.+. ...+|++++|+||++|.|.| |+++.+++ +.. +..+.+.. .+++. ...++
T Consensus 248 ~~~~~~~~~~d~~~~s~sK~~g~~~G-g~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------~~~~~ 305 (467)
T 2oqx_A 248 QITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDSFFDVYTECRTLCVVQEGF---------------------PTYGG 305 (467)
T ss_dssp HHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGGGHHHHHHHHHHHHHTTSS---------------------CCCCC
T ss_pred HHhhhhhccCCeEEEecccccCCCCc-eEEEecChhHHHHHHHHHHhhhccCCc---------------------ccccc
Confidence 110 01468889999999987755 78888766 311 11221111 01110 01122
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEec---cCCCCCcCCCCCC
Q 038499 357 PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIH---SSTINSSLGENTK 433 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~---~~~~~~~~~~~~~ 433 (609)
.+...+. ++...+.+....+ ..++..++++++.+.|.++ ++.+. +. +..++++.+. + ..
T Consensus 306 ~~~~~~~--al~~~l~~~~~~~-~~~~~~~~~~~l~~~L~~~-~~~~~-~~---~~~~~~~~~~~~~~-~~--------- 367 (467)
T 2oqx_A 306 LEGGAME--RLAVGLYDGMNLD-WLAYRIAQVQYLVDGLEEI-GVVCQ-QA---GGHAAFVDAGKLLP-HI--------- 367 (467)
T ss_dssp CCHHHHH--HHHHHHHHTTCHH-HHHHHHHHHHHHHHHHHHT-TCCEE-EE---CSSCEEEEHHHHST-TS---------
T ss_pred hhhhHHH--HHHHhhHhhhhHH-HHHHHHHHHHHHHHHHHHC-CCeee-cC---CceEEEEechhhcc-cC---------
Confidence 2222221 2222212222212 2334456778888888776 67666 42 3344555442 1 10
Q ss_pred CCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC-CCHHHHH
Q 038499 434 TETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY-MSNEEFE 512 (609)
Q Consensus 434 ~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~-~t~eeid 512 (609)
....++...+++.|.++.||.++++..|....... .+.+. ....+++|++++.. +|++|++
T Consensus 368 --~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~-~g~~~---------------~~~~~~iRl~~~~~~~t~e~i~ 429 (467)
T 2oqx_A 368 --PADQFPAQALACELYKVAGIRAVEIGSFLLGRDPK-TGKQL---------------PCPAELLRLTIPRATYTQTHMD 429 (467)
T ss_dssp --CGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTT-TCSBC---------------CCSCCEEEECCCTTTSCHHHHH
T ss_pred --CcccccHHHHHHHHHHhcCceeccccccccccccc-ccccc---------------cCccCeEEEEecCCCCCHHHHH
Confidence 00001144567777344699998754332000000 00000 00137999999998 9999999
Q ss_pred HHHHHHHHHHHhcc
Q 038499 513 FTLEALEFIAIYGQ 526 (609)
Q Consensus 513 ~ll~al~~v~~~~~ 526 (609)
+++++|+++++...
T Consensus 430 ~~~~~l~~~l~~~~ 443 (467)
T 2oqx_A 430 FIIEAFKHVKENAA 443 (467)
T ss_dssp HHHHHHHHHHHSGG
T ss_pred HHHHHHHHHHhhhh
Confidence 99999999987654
|
| >2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=1.5e-21 Score=207.52 Aligned_cols=327 Identities=16% Similarity=0.140 Sum_probs=207.5
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEE--eCChHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG------GQEDAMIF--CGSGTTA 151 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~------~~~~~vif--t~sGtta 151 (609)
|+|.....+.++.+.+++.+.+... ..+. |.. .....++|+.++++++. +++ +|++ | +|+++
T Consensus 36 ~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~--y~~----~~g~~~lr~~la~~~~~~~~~~~~~~-~v~~~~~-~g~~~ 105 (396)
T 2q7w_A 36 YKDETGKTPVLTSVKKAEQYLLENE--TTKN--YLG----IDGIPEFGRCTQELLFGKGSALINDK-RARTAQT-PGGTG 105 (396)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHHC--CCCC--CCC----TTCCHHHHHHHHHHHHCTTCHHHHTT-CEEEEEE-SHHHH
T ss_pred ccCCCCCccCcHHHHHHHHhhcCcc--cccC--CCC----CCCCHHHHHHHHHHHhcCCCCccccc-cEEEEec-ccchh
Confidence 5555555567788888887765321 1111 111 11246688888888732 244 7887 8 78888
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC--CCCCCCHHHHHHHHhhhc
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD--DDGLLDIEALRSKLELYK 229 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~g~ld~e~L~~al~~~~ 229 (609)
++..++.++. .+.+|| .|++..+.|+++...++..|++++.++.+ +++.+|+++|++++++.
T Consensus 106 a~~~~~~~~~-------------~~~~gd--~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~- 169 (396)
T 2q7w_A 106 ALRVAADFLA-------------KNTSVK--RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA- 169 (396)
T ss_dssp HHHHHHHHHH-------------HHSCCC--EEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC-
T ss_pred hHHHHHHHHH-------------HhCCCC--EEEEcCCCchhHHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhC-
Confidence 8988876653 135888 68899999999998999999999999985 46778999999999742
Q ss_pred cCCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCccc-----ccCCCCC-CCCccEEEEcCCCCC
Q 038499 230 DAKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVE-----IDVRSGQ-TDGYDAIFLSTHKFL 300 (609)
Q Consensus 230 ~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~~-----id~~~~~-~~~~D~v~~S~hK~l 300 (609)
.++++++++++++||||.+.+. ++|+++|++||+++|+|++++..... ..+..+. ....++++.|+||.+
T Consensus 170 -~~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~ 248 (396)
T 2q7w_A 170 -QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNF 248 (396)
T ss_dssp -CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT
T ss_pred -CCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccc
Confidence 1247889999999999999874 57999999999999999997753211 1121110 013457889999999
Q ss_pred CCC-CCcEEEEE---echhhc--cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHH-H
Q 038499 301 GGP-GSPGILLM---TKALYQ--LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFW-V 371 (609)
Q Consensus 301 ggp-~g~G~L~~---~~~~~~--l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~-~ 371 (609)
|.| ..+|++++ +++... +..+.. ..+...++++..... .+++.-. +
T Consensus 249 ~~~G~riG~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~~~~~~~~~~a~~~~l~~~~l 303 (396)
T 2q7w_A 249 GLYNERVGACTLVAADSETVDRAFSQMKA-------------------------AIRANYSNPPAHGASVVATILSNDAL 303 (396)
T ss_dssp TCGGGCCEEEEEECSSHHHHHHHHHHHHH-------------------------HHHTTTSSCCHHHHHHHHHHHTSHHH
T ss_pred cccccccceEEEEcCCHHHHHHHHHHHHH-------------------------HHhhccCCCCcHHHHHHHHHhcChhh
Confidence 732 23799997 443200 111100 011112232332221 1111110 0
Q ss_pred HH--hcCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHH
Q 038499 372 KE--YIGHEVIKKQEETYIERALERLLPNQ---NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVA 446 (609)
Q Consensus 372 ~~--~~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 446 (609)
.+ ..+.+.+.++.+++++++.+.|+++. ++++..+ ..+++.|. . ++...+.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~~~~~~~--~------------------~~~~~~~ 359 (396)
T 2q7w_A 304 RAIWEQELTDMRQRIQRMRQLFVNTLQEKGANRDFSFIIK----QNGMFSFS--G------------------LTKEQVL 359 (396)
T ss_dssp HHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCSCCTHHHH----CCSSEEEC--C------------------CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC----CCceEEEe--c------------------CCHHHHH
Confidence 00 12355667778888888888887763 2554432 23455443 2 2345565
Q ss_pred HHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 447 TLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 447 ~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
+.| ++.||.+++ + +||+++.. +++|+++++++|+++
T Consensus 360 ~~l-~~~gv~v~~------------------------------------~-~Ris~~~~-~~e~i~~~~~~l~~~ 395 (396)
T 2q7w_A 360 RLR-EEFGVYAVA------------------------------------S-GRVNVAGM-TPDNMAPLCEAIVAV 395 (396)
T ss_dssp HHH-HHHCEECCT------------------------------------T-CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred HHH-HhcCeeecC------------------------------------C-ceEEEeec-CHHHHHHHHHHHHhc
Confidence 656 456998872 2 59999854 899999999999875
|
| >2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1e-21 Score=208.83 Aligned_cols=329 Identities=17% Similarity=0.109 Sum_probs=207.1
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh-CC--CCCCcEEE--eCChHHHHHH
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL-GG--GQEDAMIF--CGSGTTAAIK 154 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~-g~--~~~~~vif--t~sGttaal~ 154 (609)
|+|.....+.++.+.+++.+.+... ..+. |.. .....++|+.+++++ +. +++ +|+| | +|+++++.
T Consensus 36 ~~~~~~~~~~~~~v~~a~~~~~~~~--~~~~--y~~----~~g~~~lr~~la~~~~~~~~~~~-~v~~~~~-~g~~~a~~ 105 (394)
T 2ay1_A 36 YKDATGHTPIMRAVHAAEQRMLETE--TTKT--YAG----LSGEPEFQKAMGELILGDGLKSE-TTATLAT-VGGTGALR 105 (394)
T ss_dssp CCCTTSCCCCCHHHHHHHHHHHHHC--CCCC--CCC----SSCCHHHHHHHHHHHHGGGCCGG-GEEEEEE-EHHHHHHH
T ss_pred eeCCCCCccCcHHHHHHHHHhcCCc--ccCC--CCC----CCCcHHHHHHHHHHHhCCCCCcc-cEEEEec-CCchhHHH
Confidence 3444444466788888887765320 1111 111 111456788888886 54 454 8888 8 78888888
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecC--CCCCCCHHHHHHHHhhhccCC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLD--DDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~--~~g~ld~e~L~~al~~~~~~~ 232 (609)
.++..+. .+.+|| .|++..+.|+++...++..|++++.++.+ .++.+|+++|++++++. .+
T Consensus 106 ~~~~~~~-------------~~~~gd--~vl~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~ 168 (394)
T 2ay1_A 106 QALELAR-------------MANPDL--RVFVSDPTWPNHVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAA--KK 168 (394)
T ss_dssp HHHHHHH-------------HHCTTC--CEEEEESCCHHHHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTC--CT
T ss_pred HHHHHHH-------------hcCCCC--EEEEcCCCChhHHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhC--CC
Confidence 8877653 124788 58888899999988888899999999985 46778999999999742 12
Q ss_pred CceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCccc-----ccCCCCCC-CCccEEEEcCCCCCCCC
Q 038499 233 RPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE-----IDVRSGQT-DGYDAIFLSTHKFLGGP 303 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~-----id~~~~~~-~~~D~v~~S~hK~lggp 303 (609)
+++++++++++||||.+.| +++|+++|++||+++|+|++++..... ..+..+.. ...++++.|+||++|.|
T Consensus 169 ~~~~~~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~ 248 (394)
T 2ay1_A 169 GDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIY 248 (394)
T ss_dssp TCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCG
T ss_pred CCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCc
Confidence 4678888999999999987 457899999999999999998753221 11111100 12246788999999732
Q ss_pred -CCcEEEEE---echhhccCCCCCCccCCCceEeecccccccccccccccccccCCC-hhHHHHH-HHHHHHH-HHH--h
Q 038499 304 -GSPGILLM---TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT-PQVIQMI-RAALAFW-VKE--Y 374 (609)
Q Consensus 304 -~g~G~L~~---~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt-p~i~~~~-~aal~~~-~~~--~ 374 (609)
.++|++++ ++++. +.+... +.. ..+...++ +.+.+.+ .+++... +.+ .
T Consensus 249 G~riG~~~~~~~~~~~~--~~l~~~--------------------~~~-~~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~ 305 (394)
T 2ay1_A 249 RERTGCLLALCADAATR--ELAQGA--------------------MAF-LNRQTYSFPPFHGAKIVSTVLTTPELRADWM 305 (394)
T ss_dssp GGCEEEEEEECSSHHHH--HHHHHH--------------------HHH-HHHTTTSSCCCHHHHHHHHHHHSHHHHHHHH
T ss_pred CCccceEEEEeCCHHHH--HHHHHH--------------------HHH-HHhhhcCCCChHHHHHHHHHhcChHHHHHHH
Confidence 23699998 55431 111000 000 00111122 2222221 2222110 000 1
Q ss_pred cCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 038499 375 IGHEVIKKQEETYIERALERLLPNQ---NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLND 451 (609)
Q Consensus 375 ~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 451 (609)
.+.+.+.++.+++++++.+.|+++. ++++..+ ..+++.+. . ++...+.+.| +
T Consensus 306 ~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~~~~~--~------------------~~~~~~~~~l-~ 360 (394)
T 2ay1_A 306 AELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAE----HRGMFSRL--G------------------ATPEQVKRIK-E 360 (394)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSTTTHHHH----CCSSEEEC--C------------------CCHHHHHHHH-H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCeeEEcC----CceEEEee--C------------------CCHHHHHHHH-H
Confidence 2456777888888888888887652 3444432 23455443 2 2345666666 4
Q ss_pred hcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 452 LFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 452 ~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
++||.+++ + +||+++ +++++|+++++++|+++
T Consensus 361 ~~gi~v~~------------------------------------~-~Ris~~-~~~~~~i~~~~~~l~~~ 392 (394)
T 2ay1_A 361 EFGIYMVG------------------------------------D-SRINIA-GLNDNTIPILARAIIEV 392 (394)
T ss_dssp HHCEECCT------------------------------------T-CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred hCCEEecC------------------------------------C-CeEEee-cCCHhhHHHHHHHHHHc
Confidence 56998872 2 599998 47999999999999876
|
| >1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A | Back alignment and structure |
|---|
Probab=99.86 E-value=5.3e-19 Score=190.84 Aligned_cols=332 Identities=16% Similarity=0.168 Sum_probs=198.9
Q ss_pred eEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 78 LTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 78 ~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
..|+|..++ |..++.|.+++.+.+... .+.... + ......++++.+++++|. ++|+|+++|+.
T Consensus 65 ~~ylD~~~g~~~~~lgh~~p~v~~ai~~~~~~~-~~~~~~-~-----~~~~~~~l~~~la~~~g~---~~v~~~~sGse- 133 (433)
T 1z7d_A 65 KRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL-TICSRA-F-----FSVPLGICERYLTNLLGY---DKVLMMNTGAE- 133 (433)
T ss_dssp CEEEESSHHHHTTTTCBTCHHHHHHHHHHHTTC-SCCCTT-S-----EEHHHHHHHHHHHHHHTC---SEEEEESSHHH-
T ss_pred CEEEEcccchhhcccCCCCHHHHHHHHHHHHhC-CCccCC-c-----CCHHHHHHHHHHHhhcCC---CeEEEeCCHHH-
Confidence 358887651 226788999998888653 221111 1 234567888999999974 38999955555
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccchHH-HHHHcC------------ceEEEEecCCCCCCC
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHSNLL-SWRQSL------------AEVVEIGLDDDGLLD 217 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~-~~~~~G------------~~vv~v~~~~~g~ld 217 (609)
++..++.++.. .. .-...+.+| + .|++.+..||+... .+...| ..++.++.+ |
T Consensus 134 A~~~al~~a~~-~~-----~~~~g~~~gr~--~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~-----d 200 (433)
T 1z7d_A 134 ANETAYKLCRK-WG-----YEVKKIPENMA--KIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYD-----D 200 (433)
T ss_dssp HHHHHHHHHHH-HH-----HHTSCCCTTCC--EEEEETTC--------------------------CEEEECTT-----C
T ss_pred HHHHHHHHHHH-Hh-----hhccCCCCCCC--eEEEEeCCcCCcchhhhcccCCccccccCCCCCCCeEEeCCC-----C
Confidence 66666554310 00 000001356 5 56666666665433 333333 355666643 8
Q ss_pred HHHHHHHHhhhccCCCceEEEEecccCcccccc----CHHHHHHHHHHhCCeEEEeccccC-Ccccc--cCCCCCCCCcc
Q 038499 218 IEALRSKLELYKDAKRPILGSFSACSNVTGIYS----DTRSIARLLHQYGGFACFDFAASG-PYVEI--DVRSGQTDGYD 290 (609)
Q Consensus 218 ~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~----dl~~I~~la~~~g~~vivD~A~~~-~~~~i--d~~~~~~~~~D 290 (609)
+++|+++++. +++++++++.++|+||.+. ++++|.++|++||+++|+|++++. +.... .+... ....|
T Consensus 201 ~~~le~~l~~----~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~g~~g~~~~~~~~-~~~~d 275 (433)
T 1z7d_A 201 LEALEEELKD----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLCVHHY-NVKPD 275 (433)
T ss_dssp HHHHHHHHTS----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGG-TCCCS
T ss_pred HHHHHHHhCC----CCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHcCCEEEEecCccCCCcCCcchhhHhc-CCCCC
Confidence 9999999952 5788988888888899876 689999999999999999999863 21111 11111 01468
Q ss_pred EEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHH
Q 038499 291 AIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAF 369 (609)
Q Consensus 291 ~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~ 369 (609)
++ +++|++|+. ..+|++++++++ ++.+.+...++ + ..+.|.......++++.
T Consensus 276 i~--t~sK~l~~G~~~~G~v~~~~~~--~~~l~~~~~~~-t----------------------~~~~~~~~aaa~aal~~ 328 (433)
T 1z7d_A 276 VI--LLGKALSGGHYPISAVLANDDI--MLVIKPGEHGS-T----------------------YGGNPLAASICVEALNV 328 (433)
T ss_dssp EE--EECGGGGTTSSCCEEEEECHHH--HTTCCTTCCCC-T----------------------TTTCHHHHHHHHHHHHH
T ss_pred EE--EECccccCCCCCeEEEEECHHH--Hhhhccccccc-c----------------------CCCCHHHHHHHHHHHHH
Confidence 77 556999864 358999999988 44543321110 0 02233222223344443
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHH
Q 038499 370 WVKEYIGHEVIKKQEETYIERALERLLP----NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFV 445 (609)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v 445 (609)
. +. +.+.++.+++.+++.+.|++ +|.+....+ ...++++.+.. .. .+...+
T Consensus 329 ~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~----~g~~~~i~~~~-~~---------------~~~~~~ 383 (433)
T 1z7d_A 329 L--IN---EKLCENAEKLGGPFLENLKRELKDSKIVRDVRG----KGLLCAIEFKN-EL---------------VNVLDI 383 (433)
T ss_dssp H--HH---TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEEEECT-TT---------------CCHHHH
T ss_pred H--Hh---ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe----eeeEEEEEEcc-Ch---------------hHHHHH
Confidence 3 21 23455666677777766653 343332211 23455555543 10 146678
Q ss_pred HHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 446 ATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 446 ~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+.|.+ .||.++++ .++++|+++++.+|++|+++++++|+++++.
T Consensus 384 ~~~l~~-~Gv~v~~~---------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 428 (433)
T 1z7d_A 384 CLKLKE-NGLITRDV---------------------------------HDKTIRLTPPLCITKEQLDECTEIIVKTVKF 428 (433)
T ss_dssp HHHHHH-TTEECCEE---------------------------------TTTEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-CCeEEecC---------------------------------CCCEEEEECCcCCCHHHHHHHHHHHHHHHHH
Confidence 888876 59998842 0378999999999999999999999998765
|
| >3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.7e-20 Score=201.96 Aligned_cols=376 Identities=13% Similarity=0.061 Sum_probs=201.0
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+..|+ -|+|..++ |..++.|.+++.+.+... ...+. .........+++++++++++.+
T Consensus 18 ~~G~~~~d~~g~---~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~-----~~~~~~~~~~l~~~la~~~~~~ 88 (430)
T 3i4j_A 18 GEGVFLYDDAGR---RYLDGSSGALVANIGHGRAEVGERMAAQAARL-PFVHG-----SQFSSDVLEEYAGRLARFVGLP 88 (430)
T ss_dssp EEBTEEEETTSC---EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHC-CCCCT-----TTCEEHHHHHHHHHHHHHTTCT
T ss_pred eecCEEEECCCC---EEEECCCchhccccCCCCHHHHHHHHHHHHhc-ccccc-----cccCCHHHHHHHHHHHHhCCCC
Confidence 444555444453 38888764 334788999998877542 11111 1112355778889999999987
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc--------------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA-------------- 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~-------------- 203 (609)
.+ +|+|+ +|+++++..++.++... ++. ..-..++ .|++.+..||.........+.
T Consensus 89 ~~-~v~~~-~gg~ea~~~al~~~~~~----~~~---~g~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 157 (430)
T 3i4j_A 89 TF-RFWAV-SGGSEATESAVKLARQY----HVE---RGEPGRF--KVITRVPSYHGASLGSLAASGMGARRELYTPLMRP 157 (430)
T ss_dssp TC-EEEEE-SSHHHHHHHHHHHHHHH----HHH---TTCTTCC--EEEEETTC-------------------------CG
T ss_pred CC-EEEEe-CcHHHHHHHHHHHHHHH----HHh---cCCCCCc--EEEEEeCCcCCCCcccccccCccccccccCCcCCC
Confidence 76 89999 55555666666554100 000 0001233 577766677665433322221
Q ss_pred -eEEEEecCCC---CCCCHHHHHHHHhhhccCCCceEEEEecccC-ccccccC----HHHHHHHHHHhCCeEEEeccccC
Q 038499 204 -EVVEIGLDDD---GLLDIEALRSKLELYKDAKRPILGSFSACSN-VTGIYSD----TRSIARLLHQYGGFACFDFAASG 274 (609)
Q Consensus 204 -~vv~v~~~~~---g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn-~TG~~~d----l~~I~~la~~~g~~vivD~A~~~ 274 (609)
.+..++.+.. +..|+++|+++|++.. .+++++++++.++| ++|.+.+ +++|.++|++||+++|+|++++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~le~~l~~~~-~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~ 236 (430)
T 3i4j_A 158 EAWPKLPKPDPARNGAEDAEGLRALLEREG-PETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSG 236 (430)
T ss_dssp GGSCEECCCCTTSCHHHHHTHHHHHHHHHC-GGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTT
T ss_pred CCceEcCCCcccchhhHHHHHHHHHHHhcC-CCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhC
Confidence 3444544332 3347789999997421 12467778888888 9999887 89999999999999999999873
Q ss_pred -Cccc--ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccc
Q 038499 275 -PYVE--IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE 350 (609)
Q Consensus 275 -~~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (609)
+... ..+........|++++| |.+++. ..+|++++++++. +.+.+.. +. + ..
T Consensus 237 ~~~~g~~~~~~~~~~~~~di~t~s--K~l~~G~~r~G~~~~~~~i~--~~~~~~~---~~-------------~----~~ 292 (430)
T 3i4j_A 237 MGRCGSPLALSRWSGVTPDIAVLG--KGLAAGYAPLAGLLAAPQVY--ETVMGGS---GA-------------F----MH 292 (430)
T ss_dssp TTTTSSSSGGGGTTTCCCSEEEEC--GGGTTTSSCCEEEEECHHHH--HHHHHTT---CB-------------C----CC
T ss_pred CCcccchhhhhhhcCCCCcEEEEc--ccccCCccccEEEEECHHHH--HHHhccC---Cc-------------c----cc
Confidence 2221 11111101135777654 999864 4589999998873 2221100 00 0 00
Q ss_pred ccc-CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 351 RES-GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 351 r~~-~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
... .+.+.......+++.... +..-.+.+.+....+++.+.+.+..+|++....+ ...++.+.+.. .....
T Consensus 293 ~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~-~~~~~-- 364 (430)
T 3i4j_A 293 GFTYAGHPVSVAAGLSVLDIVE-REDLTGAAKERGAQLLAGLQALQARFPQMMQVRG----TGLLLGVVLGD-LATGQ-- 364 (430)
T ss_dssp CCTTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEC---------
T ss_pred cCCCCCCHHHHHHHHHHHHHHH-cccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEecc-ccccC--
Confidence 000 112222222233333321 1111334444444444555554445566655433 23455554432 11000
Q ss_pred CCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHH
Q 038499 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNE 509 (609)
Q Consensus 430 ~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~e 509 (609)
..........+.+.|.+ .||.++++..+..+ . .++++||++++..|++
T Consensus 365 -----~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~~~-------~-------------------~~~~iRi~~~~~~t~e 412 (430)
T 3i4j_A 365 -----AFETPGIASRIGAAALK-RGLITYPGSGAEPN-------G-------------------RGDHLLLGPPLSITAA 412 (430)
T ss_dssp -----------CHHHHHHHHHH-TTEECC-------------------------------------CEEEECCCTTCCHH
T ss_pred -----CCccHHHHHHHHHHHHh-CCCEEEecccccCC-------C-------------------CCCEEEEECCCCCCHH
Confidence 00000123678888876 59999976322211 0 1478999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q 038499 510 EFEFTLEALEFIAIY 524 (609)
Q Consensus 510 eid~ll~al~~v~~~ 524 (609)
|+++++++|+++++.
T Consensus 413 ~i~~~l~~l~~~l~~ 427 (430)
T 3i4j_A 413 EVDGLLALLAGALED 427 (430)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998865
|
| >3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=99.85 E-value=4e-19 Score=192.71 Aligned_cols=367 Identities=11% Similarity=0.098 Sum_probs=208.4
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+..|+ -|+|..++ |..++.|.+++.+.+.... . .. .........+++++++++++.+
T Consensus 38 ~~G~~v~d~~g~---~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~-~-~~-----~~~~~~~~~~la~~l~~~~~~~ 107 (452)
T 3n5m_A 38 AEGCWVEDIQGK---RYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLS-Y-FP-----MSQSHEPAIKLAEKLNEWLGGE 107 (452)
T ss_dssp EEBTEEEETTCC---EEEETTHHHHTCTTCBCCHHHHHHHHHHHTTCC-C-CC-----TTSEEHHHHHHHHHHHHHHTSC
T ss_pred eeeCEEEECCCC---EEEECCcchhhccCCCCCHHHHHHHHHHHHhcC-C-cc-----cccCCHHHHHHHHHHHHhCCCC
Confidence 344455444453 38887655 4567899999998886431 1 11 1112456778899999999876
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhc---CCCceEEEECCCCccchHHHHHHc-C-----------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLR---DEERWVVFVGPHEHHSNLLSWRQS-L----------- 202 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~---~gd~~~Vlv~~~~h~s~~~~~~~~-G----------- 202 (609)
.+ |+||++|+. ++..++.++-.. . ... +++ .|++....||......... |
T Consensus 108 ~~--v~~~~ggse-A~~~al~~~~~~-------~---~~~g~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~ 172 (452)
T 3n5m_A 108 YV--IFFSNSGSE-ANETAFKIARQY-------Y---AQKGEPHRY--KFMSRYRGYHGNTMATMAATGQAQRRYQYEPF 172 (452)
T ss_dssp EE--EEEESSHHH-HHHHHHHHHHHH-------H---HTTTCTTCC--EEEEETTCCCCSSHHHHHSCCCGGGTTTTCCC
T ss_pred ce--EEEeCchHH-HHHHHHHHHHHH-------H---HhcCCCCCC--EEEEECCCcCCCCHHHHhcCCchhhccccCCC
Confidence 43 889855555 566655543100 0 002 344 5666666666544333222 1
Q ss_pred -ceEEEEecCCCCC---CC---------HHHHHHHHhhhccCCCceEEEEecc-cCccccccC----HHHHHHHHHHhCC
Q 038499 203 -AEVVEIGLDDDGL---LD---------IEALRSKLELYKDAKRPILGSFSAC-SNVTGIYSD----TRSIARLLHQYGG 264 (609)
Q Consensus 203 -~~vv~v~~~~~g~---ld---------~e~L~~al~~~~~~~~~~lv~~s~~-sn~TG~~~d----l~~I~~la~~~g~ 264 (609)
..+..++...... -| +++|++++++. ..+++++++++.+ +| ||.+.| +++|.++|++||+
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~-~~~~~~~vi~ep~~~n-~G~~~~~~~~l~~l~~l~~~~~~ 250 (452)
T 3n5m_A 173 ASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWE-LSETIAAFIMEPIITG-GGILMAPQDYMKAVHETCQKHGA 250 (452)
T ss_dssp CSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHH-CGGGEEEEEECSSBTT-TTCBCCCTTHHHHHHHHHHHHTC
T ss_pred CCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhc-CCCCEEEEEEccccCC-CCeeeCCHHHHHHHHHHHHHcCC
Confidence 1244554321111 12 89999999721 1146788888888 89 999887 9999999999999
Q ss_pred eEEEeccccC-Cccc--ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccc
Q 038499 265 FACFDFAASG-PYVE--IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEK 340 (609)
Q Consensus 265 ~vivD~A~~~-~~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (609)
++|+|++++. +... ...... .-..|++++| |.++++ .++|++++++++ .+.+.+.... +.
T Consensus 251 llI~DEv~~g~g~~g~~~~~~~~-~~~~di~t~s--K~l~~G~~~ig~~~~~~~i--~~~~~~~~~~-~~---------- 314 (452)
T 3n5m_A 251 LLISDEVICGFGRTGKAFGFMNY-DVKPDIITMA--KGITSAYLPLSATAVKREI--YEAFKGKGEY-EF---------- 314 (452)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGT-TCCCSEEEEC--GGGGTTSSCCEEEEEEHHH--HGGGCSSSTT-CS----------
T ss_pred EEEEecchhCCCcccccchhhhc-CCCCCEEeec--ccccCCCcceEEEEECHHH--HHHHhhccCC-CC----------
Confidence 9999999773 2221 111111 0135777654 888765 578999999988 3333210000 00
Q ss_pred ccccccccccccc-CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEe
Q 038499 341 DTLYLEDIEERES-GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNI 419 (609)
Q Consensus 341 ~~~~~~~~~~r~~-~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~ 419 (609)
+ ..... .+.|.......+++.... +..-.+.+.+....+++.+.+.+..+|.+....+ ...++.+.+
T Consensus 315 ---~----~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~g~~~~i~~ 382 (452)
T 3n5m_A 315 ---F----RHINTFGGNPAACALALKNLEIIE-NENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRG----KGLLVGIEL 382 (452)
T ss_dssp ---C----CCCCSSTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE----SSSCEEEEE
T ss_pred ---c----cccCCCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE----EEEEEEEEE
Confidence 0 00000 122222222233343321 1111344444444555555555566666654432 233444444
Q ss_pred ccCCCCCcCCCCCCCCCCCCCC---hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 420 HSSTINSSLGENTKTETDKPLH---GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~---~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
.. ... ....++ ...+++.|.+ .||.++++..|... .++
T Consensus 383 ~~-~~~----------~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~~---------------------------~~~ 423 (452)
T 3n5m_A 383 VN-DKE----------TKEPIDNDKIASVVNACKE-KGLIIGRNGMTTAG---------------------------YNN 423 (452)
T ss_dssp EE-ETT----------TTEECCHHHHHHHHHHHHH-TTEECEECTTSSTT---------------------------CCC
T ss_pred ec-CCc----------ccCCCCHHHHHHHHHHHHH-CCcEEeecCcccCC---------------------------CCC
Confidence 32 100 000011 2467777766 59999976544311 248
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 497 WTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
++||++++..|++|+++++++|++++++
T Consensus 424 ~iRi~~~~~~t~e~i~~~l~~l~~~l~~ 451 (452)
T 3n5m_A 424 ILTLAPPLVISSEEIAFVIGTLKTAMER 451 (452)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999988753
|
| >3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-19 Score=193.28 Aligned_cols=360 Identities=11% Similarity=0.014 Sum_probs=209.5
Q ss_pred CCCccccCCCCCCceEEecCC------CCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHT------ASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~------a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|.. ..|..++.|.+++.+.+.... .+.. .........++++.++++++.+
T Consensus 39 ~~g~~~~d~~g~---~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~~~----~~~~~~~~~~l~~~la~~~~~~ 109 (449)
T 3a8u_X 39 AEGSWLVDDKGR---KVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLD--YSPG----FQYGHPLSFQLAEKITDLTPGN 109 (449)
T ss_dssp EEBTEEEETTCC---EEEETTHHHHTCTTCBSCHHHHHHHHHHTTTCS--CCCS----SSCCCHHHHHHHHHHHTTSSTT
T ss_pred eecCEEEECCCC---EEEECCccHhhccCCCCCHHHHHHHHHHHHhCC--Cccc----cccCCHHHHHHHHHHHHhCCCC
Confidence 344455444443 588875 335568899999998886532 1110 0112345678899999999876
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHcC------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQSL------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G------------~~ 204 (609)
.+ +|+|++ |+++++..++.++... . +. +.-++++ .|++....||+. ...+...| ..
T Consensus 110 ~~-~v~~~~-ggsea~~~al~~~~~~-~---~~---~g~~~~~--~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~ 178 (449)
T 3a8u_X 110 LN-HVFFTD-SGSECALTAVKMVRAY-W---RL---KGQATKT--KMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQD 178 (449)
T ss_dssp EE-EEEEES-SHHHHHHHHHHHHHHH-H---HH---TTCTTCC--EEEEETTCCCCSSHHHHHHCCCHHHHTTTCCCSCS
T ss_pred CC-EEEEcC-cHHHHHHHHHHHHHHH-H---Hh---cCCCCCC--EEEEECCCcCCCChhhhhccCChhhccccCCCCCC
Confidence 65 899995 5555677776654200 0 00 0001445 466655555544 44444433 13
Q ss_pred EEEEecCCCC-----CCC--------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 205 VVEIGLDDDG-----LLD--------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 205 vv~v~~~~~g-----~ld--------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
++.++.+... .+| +++|+++|++.. .+++++++++..+|+||.+.| +++|.++|++||+++|
T Consensus 179 ~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~-~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li 257 (449)
T 3a8u_X 179 VDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD-ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLV 257 (449)
T ss_dssp EEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC-GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEE
T ss_pred CeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC-CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEE
Confidence 4555543211 246 999999997421 025678888777788999988 9999999999999999
Q ss_pred Eecccc-CCcccc--cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 268 FDFAAS-GPYVEI--DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 268 vD~A~~-~~~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
+|++++ ++.... .+.... ...|++ +++|++++. ..+|++++++++. +.+.....+. .
T Consensus 258 ~Dev~~~~g~~g~~~~~~~~~-~~~di~--s~sK~l~~G~~~~G~~~~~~~~~--~~l~~~~~~~-~------------- 318 (449)
T 3a8u_X 258 FDEVITGFGRTGSMFGADSFG-VTPDLM--CIAKQVTNGAIPMGAVIASTEIY--QTFMNQPTPE-Y------------- 318 (449)
T ss_dssp EECTTTTTTTTSSSSHHHHHT-CCCSEE--EECGGGGTTSSCCEEEEEEHHHH--HHHHTCSSCT-T-------------
T ss_pred EeccccCccccCcchhhhhcC-CCCCEE--EEcccccCCCCceEEEEECHHHH--HHhhccCccc-c-------------
Confidence 999984 543211 111110 135776 455999852 2389999998873 2221110000 0
Q ss_pred cccccccc-ccCCC--hhHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC---CceEEeCCCCCCCcceE
Q 038499 344 YLEDIEER-ESGGT--PQVIQ--MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN---QNIKILGNTSTKRQAIL 415 (609)
Q Consensus 344 ~~~~~~~r-~~~gt--p~i~~--~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~---p~i~v~~~~~~~r~~~~ 415 (609)
... ...+| .+.++ ...++++.. +. +.+.++.+++.+++.+.|+++ +.+.... ....++
T Consensus 319 -----~~~~~~~~t~~~~~~~~aa~~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~----~~g~~~ 384 (449)
T 3a8u_X 319 -----AVEFPHGYTYSAHPVACAAGLAALCLL--QK---ENLVQSVAEVAPHFEKALHGIKGAKNVIDIR----NFGLAG 384 (449)
T ss_dssp -----SCSSCCCCTTTTCHHHHHHHHHHHHHH--HH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEE----EETTEE
T ss_pred -----cccccccCCCcccHHHHHHHHHHHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHhcCCCeEEEe----eeEEEE
Confidence 000 00111 12222 223344432 21 235667777888888887664 3222111 123455
Q ss_pred EEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCC
Q 038499 416 SFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKP 495 (609)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~ 495 (609)
++.+.. .. .....+...+.+.|.+ .||.++++ .
T Consensus 385 ~i~~~~-~~-----------~~~~~~~~~~~~~l~~-~Gv~v~~~----------------------------------g 417 (449)
T 3a8u_X 385 AIQIAP-RD-----------GDAIVRPFEAGMALWK-AGFYVRFG----------------------------------G 417 (449)
T ss_dssp EEEECC-BT-----------TBSSHHHHHHHHHHHH-HTEECEEE----------------------------------T
T ss_pred EEEEec-Cc-----------ccccccHHHHHHHHHH-CCcEEecC----------------------------------C
Confidence 555543 11 0000012368888866 49999843 1
Q ss_pred cEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 496 GWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 496 g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++||++++.+|++|+++++++|+++++.
T Consensus 418 ~~iRis~~~~~t~~~i~~~l~~l~~~l~~ 446 (449)
T 3a8u_X 418 DTLQFGPTFNSKPQDLDRLFDAVGEVLNK 446 (449)
T ss_dssp TEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999998765
|
| >3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.9e-19 Score=194.26 Aligned_cols=339 Identities=13% Similarity=0.046 Sum_probs=207.2
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
-|+|..++ |-.++.|.+++.+.+.... +.. .+........+++++++++++.+.+ +|+|+++|+. +
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~---~~~---~~~~~~~~~~~L~e~la~~~~~~~~-~v~~~~sGse-A 147 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN---HVM---FGGLTHEPAARLAKLLVDITPAGLD-TVFFSDSGSV-S 147 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCS---CCC---SSSEECHHHHHHHHHHHHHSSTTEE-EEEEESSHHH-H
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHhcc---Ccc---ccccCCHHHHHHHHHHHHhCCCCcC-EEEEeCcHHH-H
Confidence 58998754 4568899999988876531 111 0111234567899999999987665 8999955555 5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc--------------CceEEEEecCC--CCCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS--------------LAEVVEIGLDD--DGLL 216 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~--------------G~~vv~v~~~~--~g~l 216 (609)
+..+++++... ++ ..-++|+. .|++....||......... ...+..++... .+..
T Consensus 148 ~~~Alk~a~~~----~~----~~g~~g~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 218 (457)
T 3tfu_A 148 VEVAAKMALQY----WR----GRGLPGKR-RLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPA 218 (457)
T ss_dssp HHHHHHHHHHH----HH----HTTCTTCC-EEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHH
T ss_pred HHHHHHHHHHH----HH----hcCCCCCc-eEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHH
Confidence 66655543100 00 00014544 4555555555433222221 22344444332 2235
Q ss_pred CHHHHHHHHhhhccCCCceEEEEec-ccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Ccccc--cCCCCCCCC
Q 038499 217 DIEALRSKLELYKDAKRPILGSFSA-CSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVEI--DVRSGQTDG 288 (609)
Q Consensus 217 d~e~L~~al~~~~~~~~~~lv~~s~-~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~i--d~~~~~~~~ 288 (609)
|+++|+++|+++. +++++++++. ++|++|.+.+ +++|.++|++||+++|+|+++.. +.... .+... ...
T Consensus 219 d~~~le~~l~~~~--~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~-~~~ 295 (457)
T 3tfu_A 219 YSAAFEAQLAQHA--GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHA-GVS 295 (457)
T ss_dssp HHHHHHHHHHHHG--GGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHH-TCC
T ss_pred HHHHHHHHHHhCC--CCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhc-CCC
Confidence 8899999997431 3678899998 9999999987 89999999999999999999763 22111 00000 014
Q ss_pred ccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCC---C--CccCCCceEeecccccccccccccccccccCCChhHHHH
Q 038499 289 YDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFP---P--STCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM 362 (609)
Q Consensus 289 ~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~---p--~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~ 362 (609)
.|++++ .|.++|.. .+|++++++++. +.+. + ...++. ..+.|.....
T Consensus 296 pdiit~--sK~l~gG~~~lG~v~~~~~i~--~~~~~~~~~~~~~~~t-----------------------~~~n~~a~aa 348 (457)
T 3tfu_A 296 PDIMCV--GKALTGGYLSLAATLCTADVA--HTISAGAAGALMHGPT-----------------------FMANPLACAV 348 (457)
T ss_dssp CSEEEE--CGGGGTTSSCCEEEEEEHHHH--HHHHHSSSCSCCCCCT-----------------------TTTCHHHHHH
T ss_pred ceEEEE--ChhhhCCCcceEEEEEcHHHH--HHhhccCCCceeEecC-----------------------CCcCHHHHHH
Confidence 577755 59998753 689999999883 2221 0 011100 0122222222
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC---CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCC
Q 038499 363 IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN---QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP 439 (609)
Q Consensus 363 ~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~---p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
..++++.. +. +.+.++.+++.+++++.|.++ |++..... ...++.+.+.. +
T Consensus 349 a~aaL~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~----~G~~~~i~l~~-~---------------- 402 (457)
T 3tfu_A 349 SVASVELL--LG---QDWRTRITELAAGLTAGLDTARALPAVTDVRV----CGAIGVIECDR-P---------------- 402 (457)
T ss_dssp HHHHHHHH--HT---SCHHHHHHHHHHHHHHHHGGGGGSTTEEEEEE----CSSCEEEEESS-C----------------
T ss_pred HHHHHHHH--hh---hHHHHHHHHHHHHHHHHHHHHhcCCCeeeeec----CCeEEEEEECC-c----------------
Confidence 23344432 22 234566667777777777653 45543322 23455555543 2
Q ss_pred CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 440 LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 440 l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
.+...+.+.|.++ ||.+++. .+++||++++..|++|+++++++|+
T Consensus 403 ~~~~~~~~~l~~~-Gv~v~~~----------------------------------~~~lRi~p~~~~t~eei~~~l~~L~ 447 (457)
T 3tfu_A 403 VDLAVATPAALDR-GVWLRPF----------------------------------RNLVYAMPPYICTPAEITQITSAMV 447 (457)
T ss_dssp CCHHHHHHHHHHT-TEECCCB----------------------------------TTEEEECCCTTCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHC-CeEEEec----------------------------------CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 2467888888775 9998831 2689999999999999999999999
Q ss_pred HHHHhc
Q 038499 520 FIAIYG 525 (609)
Q Consensus 520 ~v~~~~ 525 (609)
++++..
T Consensus 448 ~~l~~~ 453 (457)
T 3tfu_A 448 EVARLV 453 (457)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 998764
|
| >3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-19 Score=192.30 Aligned_cols=193 Identities=13% Similarity=0.036 Sum_probs=146.4
Q ss_pred HHHHHHHHHhhcC-CccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE--eCChHHHHHHHHHHHhcccchhh
Q 038499 91 RYIENYIINNVLP-FYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIF--CGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 91 ~~v~~ai~~~~~~-~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vif--t~sGttaal~~l~~~l~~~~~~~ 167 (609)
..|.+++.++... ...++.+. +.++.. ..+++++.+++++|++. .+++ +++|+. ++..++..+
T Consensus 32 ~~vl~a~~~~~~~~~~~~~~~~-~~y~~~---~~~~Le~~lA~l~g~e~--alv~p~~~sGt~-Ai~~al~al------- 97 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHPSTG-YGYDDE---GRDTLERVYATVFKTEA--ALVRPQIISGTH-AISTVLFGI------- 97 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCCCCT-TCTTCH---HHHHHHHHHHHHHTCSE--EEEETTSCSHHH-HHHHHHHHH-------
T ss_pred HHHHHHHHHhhhhhhccCCCcC-CCCChh---HHHHHHHHHHHHhCCCc--EEEECCCccHHH-HHHHHHHHh-------
Confidence 4577778776432 22233222 223322 26778899999999863 4553 657765 566666554
Q ss_pred HHHHHHhhhcCCCceEEEECC-CCccchHHH----------HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceE
Q 038499 168 LREKLIKCLRDEERWVVFVGP-HEHHSNLLS----------WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPIL 236 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~----------~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~l 236 (609)
+++|| .|+++. ..|...... ++..|++++.++.++++.+|+++|+++++ ++|++
T Consensus 98 --------l~~GD--~Vl~~~~~~y~~~~~~~~~~g~~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~-----~~tkl 162 (409)
T 3jzl_A 98 --------LRPDD--ELLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMT-----PKTKM 162 (409)
T ss_dssp --------CCTTC--EEEECSSSCCTTHHHHHTSSSSSSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCC-----TTEEE
T ss_pred --------cCCCC--EEEEeCCCCcHhHHHHHhcccchhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhcc-----CCCeE
Confidence 47899 688887 778776643 35679999999998889999999999998 68999
Q ss_pred EEEec----ccCccccccCHHHHHHHHHH--hCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEE
Q 038499 237 GSFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGI 308 (609)
Q Consensus 237 v~~s~----~sn~TG~~~dl~~I~~la~~--~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~ 308 (609)
|++++ ++|+||.+.|+++|+++||+ ||+++++|++++.+....+... .++|+++.|+||++||++. .|+
T Consensus 163 V~i~~s~g~p~nptg~v~~l~~I~~la~~~~~~~~livD~a~~~~~~~~~p~~---~g~Div~~S~sK~lgg~~~~~GG~ 239 (409)
T 3jzl_A 163 IGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPE---VGADIIAGSLIKNPGGGLAKTGGY 239 (409)
T ss_dssp EEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTTSSCCSGG---GTCSEEEEETTSGGGTTTCSSCEE
T ss_pred EEEECCCCCCCCCcCccccHHHHHHHHHhhCCCCEEEEeCCcccccccCCccc---cCCeEEEECccccCCccCCceEEE
Confidence 99999 99999999999999999999 9999999999887653222222 2789999999999997642 499
Q ss_pred EEEechh
Q 038499 309 LLMTKAL 315 (609)
Q Consensus 309 L~~~~~~ 315 (609)
++.++++
T Consensus 240 v~~~~~l 246 (409)
T 3jzl_A 240 IAGKEAL 246 (409)
T ss_dssp EEECHHH
T ss_pred EEeCHHH
Confidence 9999887
|
| >3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.5e-18 Score=185.14 Aligned_cols=362 Identities=13% Similarity=0.046 Sum_probs=204.0
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+..|+ .|+|..++ |..++.|.+++.+.+.... +.. ..........+++++++++++.+
T Consensus 33 g~G~~v~d~~g~---~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~---~~~---~~~~~~~~~~~la~~l~~~~~~~ 103 (448)
T 3dod_A 33 GTGIKVKDINGK---EYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIA---HST---LLGMTNVPATQLAETLIDISPKK 103 (448)
T ss_dssp EEBTEEEETTSC---EEEETTHHHHTCSSCBSCHHHHHHHHHHHTTCS---CCC---CSSSEEHHHHHHHHHHHHHSCTT
T ss_pred eeeCEEEECCCC---EEEECCcchhhccCCCCCHHHHHHHHHHHHhcc---Ccc---ccccCCHHHHHHHHHHHHhCCCC
Confidence 556666666664 38898753 4567899999998886531 110 01112345678889999999766
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC----CceEEEECCCCccchHHHHHH-cC----------
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE----ERWVVFVGPHEHHSNLLSWRQ-SL---------- 202 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g----d~~~Vlv~~~~h~s~~~~~~~-~G---------- 202 (609)
.+ +|+|+++|+. ++..+++++... ...+| + .|++....||+....... .+
T Consensus 104 ~~-~v~~~~sGse-A~~~al~~~~~~-----------~~~~G~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~ 168 (448)
T 3dod_A 104 LT-RVFYSDSGAE-AMEIALKMAFQY-----------WKNIGKPEKQ--KFIAMKNGYHGDTIGAVSVGSIELFHHVYGP 168 (448)
T ss_dssp EE-EEEEESSHHH-HHHHHHHHHHHH-----------HHHTTCTTCC--EEEEEC-------------------------
T ss_pred CC-EEEEeCchHH-HHHHHHHHHHHH-----------HHhhCCCCCC--EEEEECCCCCCccHHHHHhcCCccccccccC
Confidence 55 8999955555 566655544200 00133 4 577766666654422221 11
Q ss_pred --ceEEEEecCCCCCC-----------CHHHHHHHHhhhccCCCceEEEEeccc-CccccccC----HHHHHHHHHHhCC
Q 038499 203 --AEVVEIGLDDDGLL-----------DIEALRSKLELYKDAKRPILGSFSACS-NVTGIYSD----TRSIARLLHQYGG 264 (609)
Q Consensus 203 --~~vv~v~~~~~g~l-----------d~e~L~~al~~~~~~~~~~lv~~s~~s-n~TG~~~d----l~~I~~la~~~g~ 264 (609)
..+..++.+..... |+++|+++|++. .+++++++++.++ |++|.+.+ +++|.++|++||+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~a~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~ 246 (448)
T 3dod_A 169 LMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEH--HEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDV 246 (448)
T ss_dssp ----CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHH--GGGEEEEEEESSEESTTTCEECCTTHHHHHHHHHHHTTC
T ss_pred CCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhC--CCCEEEEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCC
Confidence 23444554432222 489999998732 1457788888887 99998877 8999999999999
Q ss_pred eEEEeccccC-Ccccc--cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccc
Q 038499 265 FACFDFAASG-PYVEI--DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEK 340 (609)
Q Consensus 265 ~vivD~A~~~-~~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~ 340 (609)
++|+|++++. +.... ..... .-..|++++| |.+++. ..+|++++++++ ++.+.........
T Consensus 247 ~lI~DEv~~g~g~~g~~~a~~~~-~~~~di~t~s--K~l~~G~~~ig~v~~~~~~--~~~~~~~~~~~~~---------- 311 (448)
T 3dod_A 247 LMIVDEVATGFGRTGKMFACEHE-NVQPDLMAAG--KGITGGYLPIAVTFATEDI--YKAFYDDYENLKT---------- 311 (448)
T ss_dssp EEEEECTTTTTTTTSSSSGGGGG-TCCCSEEEEC--GGGGTTSSCCEEEEEEHHH--HHTTCSCGGGCCC----------
T ss_pred EEEEeccccCCCcccchhhhhhc-CCCCCEEEec--ccccCCcCceEEEEECHHH--HHHhhhccccCCc----------
Confidence 9999999873 22111 11111 0135777654 999875 378999999998 3444321000000
Q ss_pred ccccccccccccc-CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEe
Q 038499 341 DTLYLEDIEERES-GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNI 419 (609)
Q Consensus 341 ~~~~~~~~~~r~~-~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~ 419 (609)
+ ..... .+.|.......+++.... +..-.+.+.+....+++.+.+ +..+|.+..... ...++++.+
T Consensus 312 ---~----~~~~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~~~~~l~~-l~~~~~~~~~~~----~g~~~~~~~ 378 (448)
T 3dod_A 312 ---F----FHGHSYTGNQLGCAVALENLALFE-SENIVEQVAEKSKKLHFLLQD-LHALPHVGDIRQ----LGFMCGAEL 378 (448)
T ss_dssp ---C----CCCCTTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHH-HTTSTTEEEEEE----ETTEEEEEE
T ss_pred ---c----cccCCCCcCHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHH-HhcCCCeEEEEe----eeEEEEEEE
Confidence 0 00000 122222222234444321 111134444444455555555 556665543321 234555555
Q ss_pred ccCCCCCcCCCCCCCCCCCCC-----ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCC
Q 038499 420 HSSTINSSLGENTKTETDKPL-----HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVK 494 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l-----~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~ 494 (609)
.. ... ..... ....+++.|.++ ||.++++
T Consensus 379 ~~-~~~----------~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~---------------------------------- 412 (448)
T 3dod_A 379 VR-SKE----------TKEPYPADRRIGYKVSLKMREL-GMLTRPL---------------------------------- 412 (448)
T ss_dssp CS-BTT----------TTBCCCGGGCHHHHHHHHHHHT-TEECCEE----------------------------------
T ss_pred cc-Ccc----------cccccchhhHHHHHHHHHHHHC-CcEEecc----------------------------------
Confidence 43 210 00000 035688888764 9998743
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 495 PGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 495 ~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.+++||++++..|++|+++++++|+++++..
T Consensus 413 ~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 443 (448)
T 3dod_A 413 GDVIAFLPPLASTAEELSEMVAIMKQAIHEV 443 (448)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2689999999999999999999999988754
|
| >2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.7e-19 Score=192.17 Aligned_cols=345 Identities=10% Similarity=-0.039 Sum_probs=201.8
Q ss_pred eEEecCCC------CCCChHHHH-H-HHHH---hhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC-CCCCCcEEEe
Q 038499 78 LTYADHTA------SGRSLRYIE-N-YIIN---NVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG-GGQEDAMIFC 145 (609)
Q Consensus 78 ~vyld~~a------~g~~~~~v~-~-ai~~---~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g-~~~~~~vift 145 (609)
..|+|..+ .|..++.|. + ++.+ .+... .+... . .......++++.++++++ .+.+ +|+|+
T Consensus 54 ~~ylD~~~~~~~~~lG~~~p~v~~~~A~~~~~~~~~~~---~~~~~---~-~~~~~~~~la~~la~~~~~~~~~-~v~~~ 125 (449)
T 2cjg_A 54 RRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALN---KPSNS---D-VYSVAMARFVETFARVLGDPALP-HLFFV 125 (449)
T ss_dssp CEEEESSHHHHTCSSCBSCHHHHTCHHHHHHHHHHHTC---CCCTT---T-CCCHHHHHHHHHHHHHHCCTTCC-EEEEE
T ss_pred cEEEEccCCccccCCCCCCHHHHHHHHHHHHHHHHHhc---CCCCc---c-cCCHHHHHHHHHHHHhcCCCCCC-EEEEe
Confidence 35889743 344678898 8 8888 65432 11110 0 123456788889999997 3444 89999
Q ss_pred CChHHHHHHHHHHHhcccchhhHHHHHHhhhcC-CCceEEEECCCCccchHHHHH---------HcCc-----eEEEEec
Q 038499 146 GSGTTAAIKRLQEVMGIAVPSILREKLIKCLRD-EERWVVFVGPHEHHSNLLSWR---------QSLA-----EVVEIGL 210 (609)
Q Consensus 146 ~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~-gd~~~Vlv~~~~h~s~~~~~~---------~~G~-----~vv~v~~ 210 (609)
++|+. ++..++.+.-..... +.+....-.+ ++ .|++....||+....+. ..+. .++.++.
T Consensus 126 ~~gse-A~~~aik~a~~~~~~--~~~~~~~~~~~~~--~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (449)
T 2cjg_A 126 EGGAL-AVENALKAAFDWKSR--HNQAHGIDPALGT--QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPY 200 (449)
T ss_dssp SSHHH-HHHHHHHHHHHHHHH--HHHHTTSCTTCCC--EEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCC
T ss_pred CchHH-HHHHHHHHHHHHhcc--cccccccccCCCC--EEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcC
Confidence 55555 566655432100000 0000000012 55 57777666665443221 1222 5666766
Q ss_pred CC--CC--------CCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc-CC
Q 038499 211 DD--DG--------LLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GP 275 (609)
Q Consensus 211 ~~--~g--------~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~-~~ 275 (609)
++ .. ..++++|++++++. .+++++++++.++|+||.+.+ +++|.++|++||+++|+|++|+ ++
T Consensus 201 ~d~~~~~~~~~~~~~~~~~~le~~i~~~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g 278 (449)
T 2cjg_A 201 MRPGLDEPAMAALEAEALRQARAAFETR--PHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278 (449)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHS--TTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTT
T ss_pred CCchhhccccchhhHHHHHHHHHHHHhc--CCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCC
Confidence 54 11 24667799888631 157889899888899998777 9999999999999999999988 33
Q ss_pred cccc--cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEI--DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
.... .+... .-..|++++ +|++ | +|++++++++ ++.+.+...+.+. .....
T Consensus 279 ~~g~~~~~~~~-~~~~di~t~--sK~l--~--iG~~~~~~~~--~~~l~~~~~~~~~------------------~~~t~ 331 (449)
T 2cjg_A 279 LTGTAWAYQQL-DVAPDIVAF--GKKT--Q--VCGVMAGRRV--DEVADNVFAVPSR------------------LNSTW 331 (449)
T ss_dssp TTSSSSTHHHH-TCCCSEEEE--CGGG--S--SEEEEECGGG--GGSTTCTTTSTTS------------------SCCSS
T ss_pred ccCcceeeccc-CCCceEEEe--cCcc--c--EEEEEECHHH--hhhhhhcccCCcc------------------cccCC
Confidence 2211 11111 014577765 4988 3 7999999988 4443331111000 00000
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCc-eEEeCCCCCCCcceEEEEeccCCCCCcC
Q 038499 354 GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQN-IKILGNTSTKRQAILSFNIHSSTINSSL 428 (609)
Q Consensus 354 ~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~-i~v~~~~~~~r~~~~~f~~~~~~~~~~~ 428 (609)
.+.+.......+++.... . +.+.++.+++++++.+.|++ +|. +....+ ...++.+.+.. .
T Consensus 332 ~~n~~~~~aa~aal~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~----~g~~~~~~~~~-~----- 396 (449)
T 2cjg_A 332 GGNLTDMVRARRILEVIE--A---EGLFERAVQHGKYLRARLDELAADFPAVVLDPRG----RGLMCAFSLPT-T----- 396 (449)
T ss_dssp SSCHHHHHHHHHHHHHHH--H---HTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEE----ETTEEEEECSS-H-----
T ss_pred CCCHHHHHHHHHHHHHHH--h---ccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEee----ccEEEEEEECC-h-----
Confidence 122222222234444321 1 34556777777777777764 344 433322 23455554332 1
Q ss_pred CCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCH
Q 038499 429 GENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSN 508 (609)
Q Consensus 429 ~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ 508 (609)
.....+++.|.+ .||.++++. ++++|+++++.+|+
T Consensus 397 -----------~~~~~~~~~l~~-~Gv~v~~~g---------------------------------~~~iRi~~~~~~t~ 431 (449)
T 2cjg_A 397 -----------ADRDELIRQLWQ-RAVIVLPAG---------------------------------ADTVRFRPPLTVST 431 (449)
T ss_dssp -----------HHHHHHHHHHHH-TTEECEEET---------------------------------TTEEEECCCTTCCH
T ss_pred -----------HHHHHHHHHHHH-CCeEEecCC---------------------------------CCEEEEECCCCCCH
Confidence 124578888876 599988431 37899999999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 038499 509 EEFEFTLEALEFIAIY 524 (609)
Q Consensus 509 eeid~ll~al~~v~~~ 524 (609)
+|+++++++|+++++.
T Consensus 432 e~i~~~l~~l~~~l~~ 447 (449)
T 2cjg_A 432 AEIDAAIAAVRSALPV 447 (449)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999988754
|
| >3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.7e-18 Score=186.68 Aligned_cols=365 Identities=13% Similarity=0.038 Sum_probs=213.4
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+..|+ -|+|..++ |..++.|.+++.+.+.... ..++ ..........+++++++++++.+
T Consensus 40 ~~G~~~~d~~G~---~~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~-~~~~----~~~~~~~~~~~la~~l~~~~~~~ 111 (460)
T 3gju_A 40 GEGVTVWDNNGR---KSIDAFAGLYCVNVGYGRQKIADAIATQAKNLA-YYHA----YVGHGTEASITLAKMIIDRAPKG 111 (460)
T ss_dssp EEBTEEEETTCC---EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHHS-CCCC----CTTCCCHHHHHHHHHHHHHSCTT
T ss_pred eeccEEEECCCC---EEEECCcchhhccCCCCCHHHHHHHHHHHHhcc-cccc----ccccCCHHHHHHHHHHHhhCCCC
Confidence 444555555554 38887654 4567889999988876421 1111 11112345778899999998776
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-HHHc------------Cce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-WRQS------------LAE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~~------------G~~ 204 (609)
.+ +|+|+++|+ +++..+++++-... ...-++++. .|++....||..... .... +..
T Consensus 112 ~~-~v~~~~gGs-eA~~~al~~~~~~~--------~~~g~~~~~-~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 180 (460)
T 3gju_A 112 MS-RVYFGLSGS-DANETNIKLIWYYN--------NVLGRPEKK-KIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAP 180 (460)
T ss_dssp EE-EEEEESSHH-HHHHHHHHHHHHHH--------HHTTCTTCC-EEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTT
T ss_pred cC-EEEEeCchH-HHHHHHHHHHHHHH--------HhcCCCCCC-EEEEECCCcCCCCHHHhhccCCcccccccCCCCCC
Confidence 65 899995444 46666655541000 000013332 566655555554433 2221 124
Q ss_pred EEEEecCC-----CCCCC--------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 205 VVEIGLDD-----DGLLD--------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 205 vv~v~~~~-----~g~ld--------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
+..++... +..++ +++|++++++. ..+++++++++.++|++|.+.+ +++|.++|++||+++|
T Consensus 181 ~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~-~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI 259 (460)
T 3gju_A 181 VLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAE-GPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLV 259 (460)
T ss_dssp EEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEE
T ss_pred CEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhc-CCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEE
Confidence 55565332 11123 68899888742 1135778889988999999776 8999999999999999
Q ss_pred Eecccc-CCccc--ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCC-------CCccCCCceEeecc
Q 038499 268 FDFAAS-GPYVE--IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFP-------PSTCGGGTVNYVNG 336 (609)
Q Consensus 268 vD~A~~-~~~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~-------p~~~ggg~v~~~~~ 336 (609)
+|++++ ++... ...... .-..|++++| |.++|. ..+|++++++++. +.+. +...++
T Consensus 260 ~DEv~~g~gr~g~~~~~~~~-~~~pdi~t~s--K~l~gG~~~lg~v~~~~~i~--~~~~~~~~~~~~~~~~~-------- 326 (460)
T 3gju_A 260 ADEVVTGFGRLGTMFGSDHY-GIKPDLITIA--KGLTSAYAPLSGVIVADRVW--QVLVQGSDKLGSLGHGW-------- 326 (460)
T ss_dssp EECTTTTTTTTSSSCHHHHH-TCCCSEEEEC--GGGTTTSSCCEEEEEEHHHH--HHHHHHHHHHCSCSCCC--------
T ss_pred EeccccCCCcccccchHhhc-CCCCCeeeee--hhhcCCCCCeEEEEECHHHH--HHHhcccccccccccCC--------
Confidence 999987 33221 000000 0135777665 999875 3689999999873 2221 110000
Q ss_pred cccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEE
Q 038499 337 FNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILS 416 (609)
Q Consensus 337 ~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~ 416 (609)
...+.|.......+++.... +..-.+.+.+....+++.+.+.+..+|.+....+ ...++.
T Consensus 327 ---------------t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~g~~~~ 386 (460)
T 3gju_A 327 ---------------TYSAHPICVAAGVANLELID-EMDLVTNAGETGAYFRAELAKAVGGHKNVGEVRG----DGMLAA 386 (460)
T ss_dssp ---------------TTTTCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE----ETTEEE
T ss_pred ---------------CCCCCHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEee----eeEEEE
Confidence 00122222222233444321 2222455666666667777777777776654432 234555
Q ss_pred EEeccCCCCCcCCCCCCCCCCCCC-----ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCC
Q 038499 417 FNIHSSTINSSLGENTKTETDKPL-----HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYV 491 (609)
Q Consensus 417 f~~~~~~~~~~~~~~~~~~~~~~l-----~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~ 491 (609)
+.+.. ... ..... ....+.+.|.+ .||.++++.
T Consensus 387 ~~~~~-~~~----------~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~------------------------------ 424 (460)
T 3gju_A 387 VEFVA-DKD----------DRVFFDASQKIGPQVATALAA-SGVIGRAMP------------------------------ 424 (460)
T ss_dssp EEECS-BTT----------TTBCCCGGGCHHHHHHHHHHH-TTEECEECS------------------------------
T ss_pred EEEcc-Ccc----------ccccccchHHHHHHHHHHHHH-CCeEEecCC------------------------------
Confidence 55543 110 00000 14567787866 499988532
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 492 GVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 492 ~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++||++++..|++|+++++++|+++++..
T Consensus 425 --~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~ 456 (460)
T 3gju_A 425 --QGDILGFAPPLCLTREQADIVVSKTADAVKSV 456 (460)
T ss_dssp --SSCEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 13799999999999999999999999988754
|
| >3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-19 Score=191.77 Aligned_cols=214 Identities=14% Similarity=0.051 Sum_probs=155.2
Q ss_pred HHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCC--ccCCCCCCchhhHHHHHHHHHHHHH
Q 038499 52 EKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPF--YGNTHTCDSYVGQHTTNMVHEASNY 129 (609)
Q Consensus 52 ~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~--~~n~~~~~~~~~~~~~~~~~e~r~~ 129 (609)
+...+++++++...+ .+++.|+ ..|.+++.+..... +.+ .. .+.++.. ..+++++.
T Consensus 25 ~~~~~~~~~~~~~~~----------~i~~~n~-------~~Vl~a~~~~~~~~~~~~~-~~-gy~Y~~~---g~~~Le~~ 82 (427)
T 3hvy_A 25 ERALNDVEKEFKYYD----------EIREYNQ-------LKVLKAFQEERISESHFTN-SS-GYGYNDI---GRDSLDRV 82 (427)
T ss_dssp HHHHHHHHHHHHHHH----------HHHHHHH-------HHHHHHHHHTTCCGGGSCC-CC-TTCTTCH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------HHHHhhH-------HHHHHHHHHHHHHHHhccc-Cc-CCCCCch---hHHHHHHH
Confidence 444566777765332 3444443 56778887754422 222 12 1222222 27788999
Q ss_pred HHHHhCCCCCCcEEE--eCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECC-CCccchHH----------
Q 038499 130 IKKCLGGGQEDAMIF--CGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP-HEHHSNLL---------- 196 (609)
Q Consensus 130 ia~~~g~~~~~~vif--t~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~---------- 196 (609)
+++++|++. .+++ ++||+. ++..++..+ ++||| .|+++. ..|+....
T Consensus 83 lA~l~g~e~--alv~p~~~sGt~-A~~~al~al---------------l~pGD--~Vl~~~~~~y~~~~~~~g~~~~~~~ 142 (427)
T 3hvy_A 83 YANIFNTES--AFVRPHFVNGTH-AIGAALFGN---------------LRPND--TMMSICGMPYDTLHDIIGMDDSKKV 142 (427)
T ss_dssp HHHHHTCSE--EEEETTCCSHHH-HHHHHHHHT---------------CCTTC--EEEECSSSCCGGGHHHHTCCTTCCS
T ss_pred HHHHhCCCc--eEEeCCCCcHHH-HHHHHHHHh---------------cCCCC--EEEEeCCCCchhHHHHhccccchhh
Confidence 999999864 4553 557765 566666655 58999 688887 77776652
Q ss_pred -HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEec----ccCccccccCHHHHHHHHHH--hCCeEEEe
Q 038499 197 -SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFD 269 (609)
Q Consensus 197 -~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~----~sn~TG~~~dl~~I~~la~~--~g~~vivD 269 (609)
.++..|++++.++. +++.+|+++|+++++++ ++|++|++++ ++||||.+.|+++|+++||+ ||+++++|
T Consensus 143 ~~l~~~G~~~~~v~~-~~~~~d~e~l~~~i~~~---~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD 218 (427)
T 3hvy_A 143 GSLREYGVKYKMVDL-KDGKVDINTVKEELKKD---DSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVD 218 (427)
T ss_dssp CCTGGGTCEEEECCC-BTTBCCHHHHHHHHHHC---TTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEE
T ss_pred hHHHHcCCEEEEecC-CCCCcCHHHHHHHhhCC---CCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEE
Confidence 24557999999998 67889999999999842 3799999999 99999999999999999999 89999999
Q ss_pred ccccCCcccccCCCCCCCCccEEEEcCCCCCCC---CCCcEEEEEechh
Q 038499 270 FAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGG---PGSPGILLMTKAL 315 (609)
Q Consensus 270 ~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lgg---p~g~G~L~~~~~~ 315 (609)
++++.+........ .++|+++.|+||++|| |.| |+++.++++
T Consensus 219 ~a~~~~~~~~~p~~---~gaDiv~~S~sK~lgg~g~~~G-G~i~~~~~l 263 (427)
T 3hvy_A 219 NCYGEFVEEKEPTD---VGADIIAGSLIKNIGGGIATTG-GYIAGKEEY 263 (427)
T ss_dssp CTTCTTTSSSCGGG---GTCSEEEEETTSGGGTTTCCSC-EEEEECHHH
T ss_pred CCccccccCCCCcc---cCCeEEEECCcccccccccceE-EEEEECHHH
Confidence 99887652222112 2689999999999998 444 999999887
|
| >3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A | Back alignment and structure |
|---|
Probab=99.83 E-value=1.2e-18 Score=189.07 Aligned_cols=349 Identities=13% Similarity=0.051 Sum_probs=198.5
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
.|+|..++ |..++.|.+++.+++... .+.. ......+...++++++++.++....++|+||++|+. +
T Consensus 62 ~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~---~~~~---~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGse-A 134 (451)
T 3oks_A 62 RLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDF---THTC---FMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSE-A 134 (451)
T ss_dssp EEEESSHHHHTCTTCTTCHHHHHHHHHHHTTC---SCCT---TTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHH-H
T ss_pred EEEEcCCCccccccCCCCHHHHHHHHHHHHhc---cccc---CCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHH-H
Confidence 48998754 456889999999888653 1211 111223556788899999987543348999965555 5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc-C-------------ceEEEEecCCC-----
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS-L-------------AEVVEIGLDDD----- 213 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-G-------------~~vv~v~~~~~----- 213 (609)
+..++++.- ..+|+. .|++....||+........ + ..+..++....
T Consensus 135 ~~~Alk~a~--------------~~~g~~-~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (451)
T 3oks_A 135 VENAVKIAR--------------SHTHKP-AVVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAE 199 (451)
T ss_dssp HHHHHHHHH--------------HHHCCC-EEEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGG
T ss_pred HHHHHHHHH--------------HhcCCC-eEEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccc
Confidence 655554431 012322 5666666666544333221 1 25666665411
Q ss_pred -C-------CCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-Cccc--
Q 038499 214 -G-------LLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVE-- 278 (609)
Q Consensus 214 -g-------~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~-- 278 (609)
| ..+++.++++|.+....+++.+++++.+++..|.+.+ +++|.++|++||+++|+|++++. +...
T Consensus 200 ~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~ 279 (451)
T 3oks_A 200 FGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAM 279 (451)
T ss_dssp GCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSS
T ss_pred cccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccc
Confidence 0 1135555555553221235667777777777788877 99999999999999999999873 2211
Q ss_pred ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 279 IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
...... ....|++++ +|.+++...+|++++++++ ++.+.+...++.. .+.+.
T Consensus 280 ~~~~~~-~~~pdi~t~--sK~l~~G~~iG~v~~~~~~--~~~~~~~~~~~t~-----------------------~~~~~ 331 (451)
T 3oks_A 280 FACEHE-GIDPDLIVT--AKGIAGGLPLSAVTGRAEI--MDSPHVSGLGGTY-----------------------GGNPI 331 (451)
T ss_dssp SGGGGG-TCCCSEEEE--CGGGGTTSSCEEEEEEHHH--HTCSCTTSBCCSS-----------------------SSCHH
T ss_pred hhhhhc-CCCCCeeee--hhhhhCCcceEEEEECHHH--HhhhcCCCcCCCC-----------------------CCCHH
Confidence 111111 013577755 5999875668999999998 4555433211110 12222
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK 438 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (609)
......+++.... +..-.+.+.++...+++.+.+.+..+|.+..... ...++++.+.. ... ....
T Consensus 332 ~~aaa~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~----~G~~~~~~~~~-~~~---------~~~~ 396 (451)
T 3oks_A 332 ACAAALATIETIE-SEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRG----RGAMIAMELVK-AGT---------TEPD 396 (451)
T ss_dssp HHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEBS-TTS---------CCBC
T ss_pred HHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEE----eeEEEEEEEec-Ccc---------CCCC
Confidence 2222233444321 1111233333333344444444444555543322 23455555432 100 0000
Q ss_pred CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 439 PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 439 ~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
......+.+.|.+ .||.++++.. ..+++||++++..|++|+++++++|
T Consensus 397 ~~~~~~~~~~l~~-~Gv~v~~~~~-------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l 444 (451)
T 3oks_A 397 ADLTKALCAGAHA-AGVIVLSCGT-------------------------------YGNVVRFLPPLSIGDDLLNEGLDVL 444 (451)
T ss_dssp HHHHHHHHHHHHH-TTEECEEECT-------------------------------TSCEEEECCCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCcEEecCCC-------------------------------CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 0124567777766 5999885421 1378999999999999999999999
Q ss_pred HHHHHh
Q 038499 519 EFIAIY 524 (609)
Q Consensus 519 ~~v~~~ 524 (609)
+++++.
T Consensus 445 ~~~l~~ 450 (451)
T 3oks_A 445 EEVLRG 450 (451)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 988753
|
| >3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-19 Score=198.31 Aligned_cols=317 Identities=14% Similarity=0.081 Sum_probs=209.1
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
....++++.+|+++|++. .++++ +|+++++..++.++ +++|| .|+++...|.|+...++.
T Consensus 195 g~i~eaE~~lA~~fGa~~--a~~v~-nGts~An~~ai~al---------------~~pGD--~VLv~r~~H~S~~~~l~l 254 (715)
T 3n75_A 195 GPHKEAEQYIARVFNADR--SYMVT-NGTSTANKIVGMYS---------------APAGS--TILIDRNCHKSLTHLMMM 254 (715)
T ss_dssp THHHHHHHHHHHHHTCSE--EEEES-SHHHHHHHHHHHHH---------------CCTTC--EEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCC--ceEEC-cHHHHHHHHHHHHh---------------CCCCC--EEEECCCccHHHHHHHHH
Confidence 357899999999999963 34454 89887877777765 48999 799999999999999999
Q ss_pred cCceEEEEecCCC-C----CC-----CHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 201 SLAEVVEIGLDDD-G----LL-----DIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 201 ~G~~vv~v~~~~~-g----~l-----d~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
.|+++++++.+.+ . .+ |+++|+++|+++....++++++++++ |++|.+.|+++|+++|++++ +++|+
T Consensus 255 sGa~pv~v~~~~~~~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~dl~~I~ela~~~~--livDE 331 (715)
T 3n75_A 255 SDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYNTDFIKKTLDVKS--IHFDS 331 (715)
T ss_dssp SCCEEEEECCCBCTTCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEECHHHHHHHCCCSE--EEEEC
T ss_pred cCCEEEEEeccccccccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCCHHHHHHHhCcCc--EEEcc
Confidence 9999999986532 2 24 89999999985311112448889999 99999999999999998764 79999
Q ss_pred cccCCcc--cc--cCCCCCC-CCccEE---EEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccc
Q 038499 271 AASGPYV--EI--DVRSGQT-DGYDAI---FLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342 (609)
Q Consensus 271 A~~~~~~--~i--d~~~~~~-~~~D~v---~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~ 342 (609)
||+.+.. +. +...+.. .++|++ +.|+||+++|+.+.|+++++++.. ...+
T Consensus 332 AH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~-~~~~--------------------- 389 (715)
T 3n75_A 332 AWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVN-EETF--------------------- 389 (715)
T ss_dssp TTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCC-HHHH---------------------
T ss_pred ccccccccCCccccccccccCcCCCEEEEEEecccccccCCCCeeEEEeCchhh-HHHH---------------------
Confidence 9987532 11 1222211 125765 899999999987789999987641 0000
Q ss_pred cccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc------eEEeCCCCCCCcce
Q 038499 343 LYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN------IKILGNTSTKRQAI 414 (609)
Q Consensus 343 ~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~------i~v~~~~~~~r~~~ 414 (609)
.........++|+...+ +.+++++.. ...| +.+.++..++++++++.|.++++ ++++++........
T Consensus 390 ---~~~~~~~~STSpsy~~~AsldaA~~~~~-~~~g-~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~ 464 (715)
T 3n75_A 390 ---NEAYMMHTTTSPHYGIVASTETAAAMMK-GNAG-KRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTEC 464 (715)
T ss_dssp ---HHHHHHTSCSSCCHHHHHHHHHHHHHHS-HHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSC
T ss_pred ---HHHHHhhcCCCchHHHHHHHHHHHHHHH-hhcc-HHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhh
Confidence 00012233455655443 344444431 1123 34667888889999998887754 67777642111111
Q ss_pred EEEEeccCCCCCc----------------CCCCCCC--CCC----CCCChHHHHHHHhhhcCcEeccCcccCChhhhhhc
Q 038499 415 LSFNIHSSTINSS----------------LGENTKT--ETD----KPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLL 472 (609)
Q Consensus 415 ~~f~~~~~~~~~~----------------~~~~~~~--~~~----~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll 472 (609)
|...+ +..+. ..-.+.+ ..| .++++..+.+.|. ++||++--.
T Consensus 465 --~~~~~-~~~w~gf~~~~~~~~~~Dp~Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~-~~~I~~E~~------------ 528 (715)
T 3n75_A 465 --WPLRS-DSTWHGFKNIDNEHMYLDPIKVTLLTPGMEKDGTMSDFGIPASIVAKYLD-EHGIVVEKT------------ 528 (715)
T ss_dssp --EECCT-TCCTTCCTTCCSSSEEECTTEEEEECSCBCTTSCBCSSCCCHHHHHHHHH-HTTCCCSEE------------
T ss_pred --hccCc-ccccccccccccCcccCCCeEEEEEcCCCCCCCccccCCCcHHHHHHHHH-HCCCEEEec------------
Confidence 11110 00000 0000111 122 3577889999995 469987621
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 473 DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 473 ~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
....|=+-++...|++++++++++|.++.+.
T Consensus 529 ---------------------d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~~ 559 (715)
T 3n75_A 529 ---------------------GPYNLLFLFSIGIDKTKALSLLRALTDFKRA 559 (715)
T ss_dssp ---------------------ETTEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCcEEEEeCCCCCHHHHHHHHHHHHHHHHH
Confidence 1355666677778999999999999988764
|
| >3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=9.9e-19 Score=187.52 Aligned_cols=194 Identities=16% Similarity=0.048 Sum_probs=145.7
Q ss_pred HHHHHHHHHhhc-CCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEE--eCChHHHHHHHHHHHhcccchhh
Q 038499 91 RYIENYIINNVL-PFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIF--CGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 91 ~~v~~ai~~~~~-~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vif--t~sGttaal~~l~~~l~~~~~~~ 167 (609)
..|.+++.+... ....+..+. +.++.. ...++++.+++++|++. .+++ +++|+. ++..++..+
T Consensus 46 ~~Vl~A~~~~~~~~~~~~~~~g-y~y~~~---~~~~Le~~lA~l~g~e~--alv~p~~~sGt~-Ai~~al~al------- 111 (427)
T 3i16_A 46 LKVLNAFQEERISEAHFTNSSG-YGYGDI---GRDSLDAVYARVFNTES--ALVRPHFVNGTH-ALGAALFGN------- 111 (427)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCT-TCTTCH---HHHHHHHHHHHHHTCSE--EEEETTCCSHHH-HHHHHHHHH-------
T ss_pred HHHHHHHHHhchhHHhcCCCCC-CCCCHH---HHHHHHHHHHHHhCCcc--eEEeCCCccHHH-HHHHHHHHH-------
Confidence 457777776532 222222222 222322 26778899999999964 4663 557765 566666655
Q ss_pred HHHHHHhhhcCCCceEEEECC-CCccchHH-----------HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 168 LREKLIKCLRDEERWVVFVGP-HEHHSNLL-----------SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~-----------~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
+++|| .|+++. ..|+.... .++..|++++.++.+++|.+|+++|++++++. ++|+
T Consensus 112 --------l~pGD--~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~~~~~v~~~~~g~~D~e~l~~~l~~~---~~tk 178 (427)
T 3i16_A 112 --------LRPGN--TMLSVCGEPYDTLHDVIGITENSNMGSLKEFGINYKQVDLKEDGKPNLEEIEKVLKED---ESIT 178 (427)
T ss_dssp --------CCTTC--EEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTCEEEECCCCTTSSCCHHHHHHHHHTC---TTEE
T ss_pred --------hCCCC--EEEEeCCCccHHHHHHHhccccchHHHHHHcCCEEEEecCccCCCcCHHHHHHHhhCC---CCCE
Confidence 47999 688887 78877653 23567999999999888999999999999731 3789
Q ss_pred EEEEec----ccCccccccCHHHHHHHHHH--hCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCC---CCCc
Q 038499 236 LGSFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGG---PGSP 306 (609)
Q Consensus 236 lv~~s~----~sn~TG~~~dl~~I~~la~~--~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lgg---p~g~ 306 (609)
+|++++ ++||||.+.|+++|+++||+ ||+++++|++++.+....+... .++|+++.|+||++|| +. .
T Consensus 179 lV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~~~p~~---~gaDiv~~S~sK~lgg~g~~~-g 254 (427)
T 3i16_A 179 LVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDTKEPTD---VGADLIAGSLIKNIGGGIAPT-G 254 (427)
T ss_dssp EEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSSSCGGG---GTCSEEEEETTSGGGTTTCCS-C
T ss_pred EEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCccccccCCccc---cCCeEEEecCcccCCCCCCce-E
Confidence 999999 99999999999999999999 9999999999887653222212 2789999999999997 44 4
Q ss_pred EEEEEechh
Q 038499 307 GILLMTKAL 315 (609)
Q Consensus 307 G~L~~~~~~ 315 (609)
|+++.++++
T Consensus 255 G~i~~~~~l 263 (427)
T 3i16_A 255 GYLAGTKDC 263 (427)
T ss_dssp EEEEECHHH
T ss_pred EEEEECHHH
Confidence 999999888
|
| >4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-18 Score=186.81 Aligned_cols=346 Identities=15% Similarity=0.091 Sum_probs=195.8
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
-|+|+.++ |..++.|.+++.+++... .+.. ......+...+++++++++++.+..++|+||++|+. +
T Consensus 65 ~ylD~~~~~~~~~lGh~~p~v~~A~~~~~~~~---~~~~---~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGse-A 137 (453)
T 4ffc_A 65 SFIDLGAGIAVTTVGASHPAVAAAIADQATHF---THTC---FMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAE-A 137 (453)
T ss_dssp EEEESSHHHHTCTTCTTCHHHHHHHHHHHHHC---SCCT---TTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHH-H
T ss_pred EEEEcCCCcccCcCCCCCHHHHHHHHHHHHhc---cccc---cCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHH-H
Confidence 48998764 456889999998887643 1111 111234556788999999998653348999955555 5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc-C-------------ceEEEEecCC----CC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS-L-------------AEVVEIGLDD----DG 214 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-G-------------~~vv~v~~~~----~g 214 (609)
+..++++.- ..+|+. .|++....||......... + ..+..++... ..
T Consensus 138 ~~~alk~a~--------------~~~g~~-~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (453)
T 4ffc_A 138 VENAIKVAR--------------LATGRP-AVVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEP 202 (453)
T ss_dssp HHHHHHHHH--------------HHHCCC-EEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCT
T ss_pred HHHHHHHHH--------------HhcCCC-EEEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCcc
Confidence 665554431 012322 5666666666544333221 1 1456666542 11
Q ss_pred CCC--------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccC-CcccccC
Q 038499 215 LLD--------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVEIDV 281 (609)
Q Consensus 215 ~ld--------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~id~ 281 (609)
.++ +++|++++.. +++.+++++..++..|.+.+ +++|.++|++||+++|+|++++. +.... +
T Consensus 203 g~~~~~~~~~~~~~l~~~i~~----~~~aavi~ep~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~-~ 277 (453)
T 4ffc_A 203 GLTGEEAARRAISRIETQIGA----QSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGA-W 277 (453)
T ss_dssp TCCHHHHHHHHHHHHHHHTCG----GGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSS-S
T ss_pred ccchHHHHHHHHHHHHHhcCC----CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccc-c
Confidence 122 3455555532 34556666666666677766 89999999999999999999863 22211 1
Q ss_pred CCCC--CCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhH
Q 038499 282 RSGQ--TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV 359 (609)
Q Consensus 282 ~~~~--~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i 359 (609)
.... ....|++++| |.+++...+|++++++++ ++.+.+...++.. .+.+..
T Consensus 278 ~a~~~~~~~pdi~t~s--K~~~~G~~~G~~~~~~~i--~~~~~~~~~~~t~-----------------------~~~~~~ 330 (453)
T 4ffc_A 278 FASEHEGIVPDIVTMA--KGIAGGMPLSAVTGRAEL--MDAVYAGGLGGTY-----------------------GGNPVT 330 (453)
T ss_dssp STHHHHTCCCSEEEEC--GGGGTTSSCEEEEEEHHH--HTTSCTTSSCCSS-----------------------SSCHHH
T ss_pred chhhhcCCCcchHhhh--hhhcCCcCeEEEEECHHH--HhhhcccCcCCCC-----------------------CcCHHH
Confidence 1000 0135777655 999875568999999998 4455433211110 122222
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCC
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP 439 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
.....+++.... +..-.+.+.+....+++.+.+.+..+|.+..... ...++.+.+.. ... .....
T Consensus 331 ~aaa~aal~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~----~g~~~~~~~~~-~~~---------~~~~~ 395 (453)
T 4ffc_A 331 CAAAVAALGVMR-ELDLPARARAIEASVTSRLSALAEEVDIIGEVRG----RGAMLAIEIVK-PGT---------LEPDA 395 (453)
T ss_dssp HHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEEE----ETTEEEEEEBC-TTS---------CCBCH
T ss_pred HHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEe----eceEEEEEEec-Ccc---------cCCCH
Confidence 222233343321 1111233333333444444444444565544322 23455554432 100 00000
Q ss_pred CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 440 LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 440 l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
.....+.+.|.+ .||.++++.. .++++||++++..|++|+++++++|+
T Consensus 396 ~~~~~~~~~l~~-~Gv~v~~~~~-------------------------------~~~~iRi~~~~~~t~e~i~~~l~~l~ 443 (453)
T 4ffc_A 396 ALTKSIAAEALS-QGVLILTCGT-------------------------------FGNVIRLLPPLVIGDDLLDEGITALS 443 (453)
T ss_dssp HHHHHHHHHHHH-TTEECCEECT-------------------------------TSCEEEECCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh-CCCEEecCCC-------------------------------CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 124567777766 5999985421 13789999999999999999999999
Q ss_pred HHHHhc
Q 038499 520 FIAIYG 525 (609)
Q Consensus 520 ~v~~~~ 525 (609)
++++..
T Consensus 444 ~~l~~~ 449 (453)
T 4ffc_A 444 DIIRAK 449 (453)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 988753
|
| >1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-18 Score=184.57 Aligned_cols=345 Identities=12% Similarity=0.001 Sum_probs=200.9
Q ss_pred eEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 78 LTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 78 ~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
..|+|..++ |..++.|.+++.+.+... .+.... + ......++++.++++++.+.+ +|+|+ +|+++
T Consensus 43 ~~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~-~~~~~~-~-----~~~~~~~l~~~la~~~~~~~~-~v~~~-~gg~e 113 (433)
T 1zod_A 43 RAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKL-DHLFSE-M-----LSRPVVDLATRLANITPPGLD-RALLL-STGAE 113 (433)
T ss_dssp CEEEETTHHHHTCTTCBTCHHHHHHHHHHHHHC-CCCCTT-C-----CCHHHHHHHHHHHHHSCTTCC-EEEEE-SCHHH
T ss_pred CEEEEcccchhccccCCCCHHHHHHHHHHHHhC-cccccc-c-----CCHHHHHHHHHHHHhCCCCcC-EEEEe-CchHH
Confidence 358887532 345788999998887543 111111 1 124567788899999998765 89999 55555
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc-hHHHHHHc-----------CceEEEEecCCC------
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS-NLLSWRQS-----------LAEVVEIGLDDD------ 213 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~~~~-----------G~~vv~v~~~~~------ 213 (609)
++..+++++. ....++ .|++....||+ ........ ...+..++.+..
T Consensus 114 a~~~a~~~~~-------------~~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 178 (433)
T 1zod_A 114 SNEAAIRMAK-------------LVTGKY--EIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFE 178 (433)
T ss_dssp HHHHHHHHHH-------------HHHTCC--EEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCE
T ss_pred HHHHHHHHHH-------------HhhCCC--eEEEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccC
Confidence 7777766431 012234 45555555544 33333221 123444543221
Q ss_pred ------CCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEecccc-CCcccc--c
Q 038499 214 ------GLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAAS-GPYVEI--D 280 (609)
Q Consensus 214 ------g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~-~~~~~i--d 280 (609)
+.+|+++|++++++. ..+++++++++..+|+||.+.+ +++|.++|++||+++|+|++++ ++.... .
T Consensus 179 ~~~~~~~~~d~~~le~~l~~~-~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~ 257 (433)
T 1zod_A 179 RNGAYDYLAELDYAFDLIDRQ-SSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFA 257 (433)
T ss_dssp ETTEECHHHHHHHHHHHHHHH-CCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSST
T ss_pred CchhhhHHHHHHHHHHHHHhc-CCCCeEEEEEccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhH
Confidence 124699999999742 1135678777777788998776 9999999999999999999988 332211 0
Q ss_pred CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHH
Q 038499 281 VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI 360 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~ 360 (609)
+... ....|++ +++|.+|++.++|++++++++. +.+.+... ......+.+.+.
T Consensus 258 ~~~~-~~~~di~--s~sK~~~~G~~ig~~~~~~~~~--~~~~~~~~----------------------~~~~t~~~~~~~ 310 (433)
T 1zod_A 258 CQRD-GVTPDIL--TLSKTLGAGLPLAAIVTSAAIE--ERAHELGY----------------------LFYTTHVSDPLP 310 (433)
T ss_dssp HHHH-TCCCSEE--EECHHHHTTSSCEEEEECHHHH--HHHHHTTC----------------------CCCCTTTTCHHH
T ss_pred Hhhc-CCCCCEE--EecccccCCCCeeEEEEhHHHH--HhhccCCC----------------------CCCCCCCcCHHH
Confidence 0100 0135766 4559998756689999998872 22211000 000001112222
Q ss_pred H-HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 361 Q-MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 361 ~-~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
. ...++++.. +.. .+.++.+++++++.+.|++ +|.+....+ ...++++.+.. ...
T Consensus 311 ~~a~~aal~~~--~~~---~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~----~g~~~~i~~~~-~~~---------- 370 (433)
T 1zod_A 311 AAVGLRVLDVV--QRD---GLVARANVMGDRLRRGLLDLMERFDCIGDVRG----RGLLLGVEIVK-DRR---------- 370 (433)
T ss_dssp HHHHHHHHHHH--HHT---THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE----ETTEEEEEEEE-ETT----------
T ss_pred HHHHHHHHHHH--HhC---CHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEE----EEEEEEEEEec-Ccc----------
Confidence 2 223344432 222 2445566666666666654 344433322 23455554432 100
Q ss_pred CC--CCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHH
Q 038499 436 TD--KPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513 (609)
Q Consensus 436 ~~--~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ 513 (609)
.+ .......+.+.|.+ .||.+++|..+. .++++||++++..|++|+++
T Consensus 371 ~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~~-----------------------------~~~~lRi~~~~~~t~~~i~~ 420 (433)
T 1zod_A 371 TKEPADGLGAKITRECMN-LGLSMNIVQLPG-----------------------------MGGVFRIAPPLTVSEDEIDL 420 (433)
T ss_dssp TTEECTTHHHHHHHHHHH-TTEECCEECCTT-----------------------------SCCEEEECCCTTCCHHHHHH
T ss_pred ccCCChHHHHHHHHHHHH-CCCeEeccCCCC-----------------------------CCCEEEEECCcCCCHHHHHH
Confidence 00 00125678888865 699998654211 13799999999999999999
Q ss_pred HHHHHHHHHHh
Q 038499 514 TLEALEFIAIY 524 (609)
Q Consensus 514 ll~al~~v~~~ 524 (609)
++++|+++++.
T Consensus 421 ~l~~l~~~l~~ 431 (433)
T 1zod_A 421 GLSLLGQAIER 431 (433)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999988754
|
| >4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=3e-18 Score=186.27 Aligned_cols=363 Identities=12% Similarity=0.042 Sum_probs=211.4
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+..|+ .|+|..++ |..++.|.+++.+.+.... .+.. ..........+++++++++++.+
T Consensus 39 ~~G~~~~d~~g~---~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~--~~~~---~~~~~~~~~~~la~~l~~~~~~~ 110 (459)
T 4a6r_A 39 GEGVYLWDSEGN---KIIDGMAGLWCVNVGYGRKDFAEAARRQMEELP--FYNT---FFKTTHPAVVELSSLLAEVTPAG 110 (459)
T ss_dssp EEBTEEEETTCC---EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCS--CCCT---TSSSCCHHHHHHHHHHHHHSCTT
T ss_pred eecCEEEECCCC---EEEECCCchhcccCCCCCHHHHHHHHHHHHhcc--cccc---ccccCCHHHHHHHHHHHHhCCCC
Confidence 555666666664 38998754 4557889999988886431 1110 11112455778899999999877
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc-C------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS-L------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-G------------~~ 204 (609)
.+ +|+|+++|+. ++..+++++.... . ..-++++. .|++....||+........ + ..
T Consensus 111 ~~-~v~~~~ggse-A~~~al~~~~~~~----~----~~g~~~~~-~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~ 179 (459)
T 4a6r_A 111 FD-RVFYTNSGSE-SVDTMIRMVRRYW----D----VQGKPEKK-TLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPG 179 (459)
T ss_dssp CC-EEEEESSHHH-HHHHHHHHHHHHH----H----HTTCTTCC-EEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSS
T ss_pred CC-EEEEeCchHH-HHHHHHHHHHHHH----H----hcCCCCCC-EEEEECCCcCCccHHHHhhcCChhhccccCCCCCC
Confidence 66 8999954554 5666655542000 0 00013322 5666665666544332221 1 13
Q ss_pred EEEEecCC-----CCCCC--------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEE
Q 038499 205 VVEIGLDD-----DGLLD--------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFAC 267 (609)
Q Consensus 205 vv~v~~~~-----~g~ld--------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vi 267 (609)
+..++... +. +| +++|++++.+.. .+++++++++.+++++|.+.+ +++|.++|++||+++|
T Consensus 180 ~~~~~~p~~~~~~~~-~d~~~~~~~~~~~le~~i~~~~-~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI 257 (459)
T 4a6r_A 180 MAHIEQPWWYKHGKD-MTPDEFGVVAARWLEEKILEIG-ADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLV 257 (459)
T ss_dssp EEEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC-GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEE
T ss_pred CEEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHHcC-CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEE
Confidence 44454321 11 34 788998887421 135678888888888899887 9999999999999999
Q ss_pred EeccccC-Cccc--ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCC---CCccCCCceEeecccccc
Q 038499 268 FDFAASG-PYVE--IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFP---PSTCGGGTVNYVNGFNEK 340 (609)
Q Consensus 268 vD~A~~~-~~~~--id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~---p~~~ggg~v~~~~~~~~~ 340 (609)
+|++++. +... ...... ....|++++| |.++|+ ..+|++++++++. +.+. +...+
T Consensus 258 ~DEv~~g~gr~G~~~~~~~~-~~~pdi~t~s--K~l~gg~~~lg~v~~~~~i~--~~~~~~~~~~~~------------- 319 (459)
T 4a6r_A 258 ADEVICGFGRTGEWFGHQHF-GFQPDLFTAA--KGLSSGYLPIGAVFVGKRVA--EGLIAGGDFNHG------------- 319 (459)
T ss_dssp EECTTTTTTTTSSSSHHHHH-TCCCSEEEEC--GGGGTTSSCCEEEEECHHHH--HHHHHHCTTHHH-------------
T ss_pred EeccccCCCcccccchHhhc-CCCCCeeehh--hhhcCCCCCccceeeCHHHH--HHhhcCCCcccC-------------
Confidence 9999773 2221 000000 0145777765 998875 4689999999873 2221 11000
Q ss_pred cccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEe
Q 038499 341 DTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIK-KQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNI 419 (609)
Q Consensus 341 ~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~-~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~ 419 (609)
....+.|.......+++.... +..-.+.+. ++...+++.+.+.|..+|.+....+ ...++.+.+
T Consensus 320 ----------~t~~~~~~~~aaa~aal~~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~----~g~~~~~~~ 384 (459)
T 4a6r_A 320 ----------FTYSGHPVCAAVAHANVAALR-DEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRG----VGMVQAFTL 384 (459)
T ss_dssp ----------HHHCSCHHHHHHHHHHHHHHH-HTCHHHHHHHTHHHHHHHHHHHHHTTCTTEEEEEE----ETTEEEEEE
T ss_pred ----------CCCCCCHHHHHHHHHHHHHHh-cchHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEE----EEEEEEEEE
Confidence 001122222222233343321 111234444 4445555555566677776655432 234555554
Q ss_pred ccCCCCCcCCCCCCCCCCCCC-----ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCC
Q 038499 420 HSSTINSSLGENTKTETDKPL-----HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVK 494 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l-----~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~ 494 (609)
.. ... ....+ ....+++.|.++ ||.++++
T Consensus 385 ~~-~~~----------~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~---------------------------------- 418 (459)
T 4a6r_A 385 VK-NKA----------KRELFPDFGEIGTLCRDIFFRN-NLIMRAC---------------------------------- 418 (459)
T ss_dssp CS-BTT----------TTBCCSSTTHHHHHHHHHHHHT-TEECEEE----------------------------------
T ss_pred ec-Ccc----------ccccccchHHHHHHHHHHHHHC-CeEEecC----------------------------------
Confidence 43 110 00000 145677888764 9998842
Q ss_pred CcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 495 PGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 495 ~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
.+++||++++..|++|+++++++|+++++...
T Consensus 419 g~~iRi~~~~~~t~e~i~~~l~~l~~~l~~~~ 450 (459)
T 4a6r_A 419 GDHIVSAPPLVMTRAEVDEMLAVAERCLEEFE 450 (459)
T ss_dssp TTEEEECCCTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 15899999999999999999999999887643
|
| >2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-19 Score=195.92 Aligned_cols=294 Identities=12% Similarity=0.054 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHhC------CCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH
Q 038499 123 VHEASNYIKKCLG------GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196 (609)
Q Consensus 123 ~~e~r~~ia~~~g------~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (609)
..++|+.|+++++ .+++ +|++| +|+++++..++.++...... ..+++|| .|+++.+.|+.+..
T Consensus 102 ~~~lr~aia~~~~~~~~~~~~~~-~iv~t-~G~~~al~~~~~~l~~~~~~-------~~~~~Gd--~Vlv~~P~y~~~~~ 170 (427)
T 2hox_A 102 SFELEKTIKELHEVVGNAAAKDR-YIVFG-VGVTQLIHGLVISLSPNMTA-------TPDAPES--KVVAHAPFYPVFRE 170 (427)
T ss_dssp CHHHHHHHHHHHHHHTCBCCTTC-EEEEE-SHHHHHHHHHHHHHSCCTTT-------CTTSCCE--EEEECSSCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCcCCCCC-EEEEe-CCHHHHHHHHHHHHhhcccc-------ccCCCCC--EEEEeCCCcccHHH
Confidence 3556777777765 4555 89998 89999999998887200000 0026788 79999999999998
Q ss_pred HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 197 SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.++..|++++... +|+++|+++++ ++++++++++++||||.+.+ + + ++ ++..+.|+++..+.
T Consensus 171 ~~~~~g~~~~~~~------~d~~~l~~~~~-----~~~k~v~l~~p~NPtG~~~~-~-~---l~--~~~~i~d~~~~~~~ 232 (427)
T 2hox_A 171 QTKYFDKKGYVWA------GNAANYVNVSN-----PEQYIEMVTSPNNPEGLLRH-A-V---IK--GCKSIYDMVYYWPH 232 (427)
T ss_dssp HHHHSCBTTEEEE------EEGGGGTTCSC-----GGGEEEEEESSCTTTCCCCC-C-S---ST--TCEEEEECTTCSTT
T ss_pred HHHHcCCeeeeec------CCHHHHHHhhc-----CCceEEEEcCCCCCcccccH-H-H---Hc--CCCEEEeecccCCC
Confidence 9999999887543 56788887776 47899999999999999999 3 2 33 56788898765322
Q ss_pred ccccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEe-chhhccCCCCCCccCCCceEeecccccccccccccccccccC
Q 038499 277 VEIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMT-KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESG 354 (609)
Q Consensus 277 ~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~-~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~ 354 (609)
.. +..+. .+.++++.|+||.+|.|+ .+|+++++ +++ ++.+... ......
T Consensus 233 ~s--~~~~~-~~~~i~~~S~SK~~g~~G~RiG~~~~~~~~l--~~~l~~~------------------------~~~~~~ 283 (427)
T 2hox_A 233 YT--PIKYK-ADEDILLFTMSKFTGHSGSRFGWALIKDESV--YNNLLNY------------------------MTKNTE 283 (427)
T ss_dssp TS--CCCSC-BCCSEEEEEHHHHTSCGGGCCEEEEECCHHH--HHHHHHH------------------------HHHHTS
T ss_pred CC--ccccC-CCceEEEEeChhcCCCCCceEEEEEECCHHH--HHHHHHH------------------------HHhcCC
Confidence 11 11111 256899999999998443 38999995 666 2222111 111113
Q ss_pred CChhHHHHHHHHHHHHHHH-----------hcCHHHHHHHHHHHHHHHHHHhCCCCceEE--eC-CCC-------CCCcc
Q 038499 355 GTPQVIQMIRAALAFWVKE-----------YIGHEVIKKQEETYIERALERLLPNQNIKI--LG-NTS-------TKRQA 413 (609)
Q Consensus 355 gtp~i~~~~~aal~~~~~~-----------~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v--~~-~~~-------~~r~~ 413 (609)
+++.+.+.+. +.++... ....+.++++.++.++++.+.|++++++.+ +. +.. .+..+
T Consensus 284 ~~~~~~q~a~--~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g 361 (427)
T 2hox_A 284 GTPRETQLRS--LKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSP 361 (427)
T ss_dssp SCCHHHHHHH--HHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCC
T ss_pred CCCHHHHHHH--HHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCc
Confidence 4444444321 1111110 112345567778889999999999888876 32 210 12345
Q ss_pred eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
++.|.-.+ . +...+++.|.++.||.+++|..|..
T Consensus 362 ~f~~~~~~-~-----------------~~~~~~~~ll~~~gI~v~pg~~f~~---------------------------- 395 (427)
T 2hox_A 362 SYAWVKCE-W-----------------EEDKDCYQTFQNGRINTQNGVGFEA---------------------------- 395 (427)
T ss_dssp SEEEEEEC-S-----------------GGGCSHHHHHHHTTEECEEGGGGTS----------------------------
T ss_pred eEEEEECC-C-----------------cHHHHHHHHHHHCCEEEcCCCccCC----------------------------
Confidence 55554443 1 2344566665557999999876641
Q ss_pred CCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 494 KPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 494 ~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++|||++ +++++++.+++.|+.++..
T Consensus 396 ~~~~~Ris~~--~~~e~l~~~l~~l~~~~~~ 424 (427)
T 2hox_A 396 SSRYVRLSLI--KTQDDFDQLMYYLKDMVKA 424 (427)
T ss_dssp CTTEEEEECS--SCHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEec--CCHHHHHHHHHHHHHHHhh
Confidence 1489999998 4889999999999988743
|
| >3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.81 E-value=2.8e-18 Score=184.89 Aligned_cols=335 Identities=15% Similarity=0.075 Sum_probs=191.1
Q ss_pred EEecCCCCC------CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTASG------RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~g------~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
-|+|+.++. ..++.|.+++.+.+..... .. + ......+++++++++++ +.+ +|+|+++|+. +
T Consensus 56 ~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~--~~--~-----~~~~~~~l~~~la~~~~-~~~-~v~~~~sGse-a 123 (434)
T 3l44_A 56 KYIDYLAAYGPIITGHAHPHITKAITTAAENGVL--YG--T-----PTALEVKFAKMLKEAMP-ALD-KVRFVNSGTE-A 123 (434)
T ss_dssp EEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSC--CS--S-----CCHHHHHHHHHHHHHCT-TCS-EEEEESSHHH-H
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhCcC--CC--C-----CCHHHHHHHHHHHHhCC-CCC-EEEEeCchHH-H
Confidence 488887653 3578899999888764211 10 1 12345678889999987 444 8999965555 5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH-cCc-------------------eEEEEecCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ-SLA-------------------EVVEIGLDD 212 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-~G~-------------------~vv~v~~~~ 212 (609)
+..++.+.. ...+++ .|++....||+....... .|. ++..++.+
T Consensus 124 ~~~ai~~a~-------------~~~~~~--~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 187 (434)
T 3l44_A 124 VMTTIRVAR-------------AYTGRT--KIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN- 187 (434)
T ss_dssp HHHHHHHHH-------------HHHCCC--EEEEETTCCCCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTT-
T ss_pred HHHHHHHHH-------------HhhCCC--EEEEEcCccCCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcc-
Confidence 665555431 012444 566666666554322211 121 33333332
Q ss_pred CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccccCCCC--CC
Q 038499 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDVRSG--QT 286 (609)
Q Consensus 213 ~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~~~~--~~ 286 (609)
|+++|++++++.. +++++++++.++|++|.+.+ +++|.++|++||+++|+|+++... ..-.+... ..
T Consensus 188 ----d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~ 260 (434)
T 3l44_A 188 ----NVETLKEALDKWG--HEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFMYGGAQDLLG 260 (434)
T ss_dssp ----CHHHHHHHHHHHG--GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHT
T ss_pred ----cHHHHHHHHHhCC--CCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce-eccccHHHHHcC
Confidence 8999999997431 35778888888888999988 999999999999999999998742 11000000 00
Q ss_pred CCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC--hhHHHH--
Q 038499 287 DGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT--PQVIQM-- 362 (609)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt--p~i~~~-- 362 (609)
...|++++| |.+|++.++|++++++++ ++.+.+... ....+| .+.++.
T Consensus 261 ~~~di~t~s--K~~~~G~~iG~~~~~~~i--~~~~~~~~~------------------------~~~~~t~~~~~~a~aa 312 (434)
T 3l44_A 261 VTPDLTALG--KVIGGGLPIGAYGGKKEI--MEQVAPLGP------------------------AYQAGTMAGNPASMAS 312 (434)
T ss_dssp CCCSEEEEE--GGGGTTSSCEEEEECHHH--HTTBTTTSS------------------------BCCCCTTTTCHHHHHH
T ss_pred CCCCeeehh--hhhcCCcCeeeEEEcHHH--HHhhccCCC------------------------cccCCCCCcCHHHHHH
Confidence 135766554 999877779999999988 444432100 000111 122222
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC
Q 038499 363 IRAALAFWVKEYIGHEVIKKQEETYIERALERLLP----NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK 438 (609)
Q Consensus 363 ~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~ 438 (609)
..+++... +. +.+.++.+++.+++++.|.+ ++.+.... ....++.+.+.. ....+. .......
T Consensus 313 a~aal~~~--~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~~~~~~~~~-~~~~~~---~~~~~~~ 379 (434)
T 3l44_A 313 GIACLEVL--QQ---EGLYEKLDELGATLEKGILEQAAKHNIDITLN----RLKGALTVYFTT-NTIEDY---DAAQDTD 379 (434)
T ss_dssp HHHHHHHH--TS---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE----EETTEEEEEESS-SCCCSH---HHHHHSC
T ss_pred HHHHHHHH--Hc---ccHHHHHHHHHHHHHHHHHHHHHhCCCCEEEE----eeccEEEEEEec-Ccccch---hhccccC
Confidence 22333322 11 34445555555565555543 33222211 123455555432 100000 0000000
Q ss_pred CCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHH
Q 038499 439 PLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEAL 518 (609)
Q Consensus 439 ~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al 518 (609)
......+.+.|.+ .||.++++. .+.+|+++ ..|++|+++++++|
T Consensus 380 ~~~~~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~rl~~--~~t~e~i~~~l~~l 423 (434)
T 3l44_A 380 GEMFGKFFKLMLQ-EGVNLAPSK---------------------------------YEAWFLTT--EHTKEDIEYTIEAV 423 (434)
T ss_dssp HHHHHHHHHHHHH-TTEECCSST---------------------------------TCCEECCT--TCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCeEEeecC---------------------------------CCcEEEec--ccCHHHHHHHHHHH
Confidence 0112567777766 499998542 24678864 57999999999999
Q ss_pred HHHHHhc
Q 038499 519 EFIAIYG 525 (609)
Q Consensus 519 ~~v~~~~ 525 (609)
+++++..
T Consensus 424 ~~~l~~~ 430 (434)
T 3l44_A 424 GRAFAAL 430 (434)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
|
| >4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.6e-19 Score=191.46 Aligned_cols=293 Identities=11% Similarity=0.075 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHh-CCC-----CCCcEE--EeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 123 VHEASNYIKKCL-GGG-----QEDAMI--FCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 123 ~~e~r~~ia~~~-g~~-----~~~~vi--ft~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
..++|+.+++++ |.. ++ +|. .+ .|+++++..+..++.. ..++|| .|+++.+.|+++
T Consensus 81 ~~~lr~~ia~~~~~~~~~~~~~~-~i~~~~~-~~g~ga~~~~~~~~~~------------~~~~gd--~Vlv~~p~y~~~ 144 (409)
T 4eu1_A 81 IASFVEEAQKLCFGPTCAALRDG-RIASCQT-LGGTGALRIGGDLLNR------------FVANCN--RIYGPDVGYPNH 144 (409)
T ss_dssp CHHHHHHHHHHHHCSSCHHHHTT-CEEEEEE-SHHHHHHHHHHHHGGG------------TSSSCC--EEEEESSCCTHH
T ss_pred cHHHHHHHHHHHcCCCchhhccC-ceeeeec-ccchHHHHHHHHHHHH------------hcCCCC--EEEEeCCCcHhH
Confidence 356788888876 654 34 674 36 6777777766544321 136788 699999999999
Q ss_pred HHHHHHcCceEEEEecC--CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHH---HHHHHHHHhCCeEEEe
Q 038499 195 LLSWRQSLAEVVEIGLD--DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTR---SIARLLHQYGGFACFD 269 (609)
Q Consensus 195 ~~~~~~~G~~vv~v~~~--~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~---~I~~la~~~g~~vivD 269 (609)
...++..|++++.++++ +++.+|+++|++++++. .++++++++++++||||.+.+.+ +|+++|++||+++|+|
T Consensus 145 ~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~--~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~D 222 (409)
T 4eu1_A 145 ESIFAKAGMELTPYSYYDPATKGLNLAGMLECLDKA--PEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVD 222 (409)
T ss_dssp HHHHHHTTCEEEEECCEETTTTEECHHHHHHHHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCeEEEEEeecCcCCcCcHHHHHHHHHhC--CCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEe
Confidence 99999999999999973 46789999999999742 13567888899999999998855 5999999999999999
Q ss_pred ccccCCc-cc-----ccCCCC-CCCCccEEEEcCCCCCCCCC-CcEEE--EEe-ch----hhccCCCCCCccCCCceEee
Q 038499 270 FAASGPY-VE-----IDVRSG-QTDGYDAIFLSTHKFLGGPG-SPGIL--LMT-KA----LYQLGSFPPSTCGGGTVNYV 334 (609)
Q Consensus 270 ~A~~~~~-~~-----id~~~~-~~~~~D~v~~S~hK~lggp~-g~G~L--~~~-~~----~~~l~~~~p~~~ggg~v~~~ 334 (609)
++++... .. ..+... ......+++.|++|.+|.|+ ++|++ ++. ++ + +..+...
T Consensus 223 e~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~riG~~~~v~~~~~~~~~l--~~~~~~~---------- 290 (409)
T 4eu1_A 223 MAYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGHRCGALHISTASAEEAKRL--VSQLALL---------- 290 (409)
T ss_dssp ESCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGGCCEEEEEECSSHHHHHHH--HHHHHHH----------
T ss_pred ccccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccCCceEEEEEeCCHHHHHHH--HHHHHHH----------
Confidence 9966432 11 111100 01123477889999998543 48997 554 44 3 1111000
Q ss_pred cccccccccccccccccccCCChhHHHHH-HHHHHHH-H-HH-hcCHHHHHHHHHHHHHHHHHHhCCCC--c-eEEeCCC
Q 038499 335 NGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFW-V-KE-YIGHEVIKKQEETYIERALERLLPNQ--N-IKILGNT 407 (609)
Q Consensus 335 ~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~-~-~~-~~g~~~i~~~~~~l~~~~~~~L~~~p--~-i~v~~~~ 407 (609)
......+.+.+.+.+ .+++.-. + .+ ....+.++++.+++++++.+.|++++ + +++..+
T Consensus 291 --------------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~- 355 (409)
T 4eu1_A 291 --------------IRPMYNNPPLYGAWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACGSVHDWSHIER- 355 (409)
T ss_dssp --------------HHHHHSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH-
T ss_pred --------------HhhhcCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceecC-
Confidence 001112222333322 1122100 0 00 11245677788888889999887652 1 444433
Q ss_pred CCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHh
Q 038499 408 STKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQ 487 (609)
Q Consensus 408 ~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~ 487 (609)
..+++.|. . +.... +..|.+++||.+.+|
T Consensus 356 ---~~~~~~~~--~------------------~~~~~-~~~ll~~~gv~v~p~--------------------------- 384 (409)
T 4eu1_A 356 ---QVGMMAYT--G------------------LTREQ-VELLRSEYHIYMTLN--------------------------- 384 (409)
T ss_dssp ---SCSSEEEC--C------------------CCHHH-HHHHHHHHCEECCTT---------------------------
T ss_pred ---CceEEEEe--C------------------CCHHH-HHHHHHcCCEEEcCC---------------------------
Confidence 23455542 2 23344 555556679988732
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 488 KGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 488 ~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.||+++. .+++|+++++++|++++
T Consensus 385 ----------~Ri~~~~-~~~~~i~~~~~~l~~~l 408 (409)
T 4eu1_A 385 ----------GRAAVSG-LNSTNVEYVSQAIHNVT 408 (409)
T ss_dssp ----------CEEEGGG-CCTTTHHHHHHHHHHHH
T ss_pred ----------CEEEEEe-cCHhhHHHHHHHHHHHh
Confidence 3888864 45677999999998875
|
| >2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-18 Score=192.69 Aligned_cols=156 Identities=15% Similarity=0.057 Sum_probs=117.4
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH--cCceEEEEecCCC--CC
Q 038499 140 DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ--SLAEVVEIGLDDD--GL 215 (609)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~--~G~~vv~v~~~~~--g~ 215 (609)
++|++| +|+++++..++.++... ..+++|| .|+++.+.|+.+...... .|++++.++.+++ +.
T Consensus 166 ~~I~~t-~G~~eal~~~~~~l~~~----------~l~~~Gd--~Vlv~~P~y~~~~~~~~~~~~g~~~~~v~~~~~~~~~ 232 (546)
T 2zy4_A 166 VNLFAV-EGGTAAMAYIFESLKLN----------GLLKAGD--KVAIGMPVFTPYIEIPELAQYALEEVAINADPSLNWQ 232 (546)
T ss_dssp EEEEEE-EHHHHHHHHHHHHHHHT----------TSSCTTC--EEEEEESCCHHHHHHHHSTTSCCEEEEEECBGGGTTB
T ss_pred ceEEEE-CCHHHHHHHHHHHhhhh----------hcCCCCC--EEEEeCCCCccHHHHHHHcCCCcEEEEEecCcccCCC
Confidence 489888 89999999988764100 0036888 699999999988876543 4789999998753 46
Q ss_pred CCHHHHHHHHhhhccCCCceEEEEecccCccccccCH---HHHHHHH--HHhCCeEEEeccccCCcc-cccCCCCCCCCc
Q 038499 216 LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT---RSIARLL--HQYGGFACFDFAASGPYV-EIDVRSGQTDGY 289 (609)
Q Consensus 216 ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la--~~~g~~vivD~A~~~~~~-~id~~~~~~~~~ 289 (609)
+|+++|++++. ++++++++++++||||.+.+. ++|+++| ++||+++|+|++++.... ...+... ..+.
T Consensus 233 ~d~~~l~~~~~-----~~~k~v~l~~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~~~s~~~~-~~~~ 306 (546)
T 2zy4_A 233 YPDSELDKLKD-----PAIKIFFCVNPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADDFQSLFAI-CPEN 306 (546)
T ss_dssp CCHHHHGGGGS-----TTEEEEEEESSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTTCCCHHHH-CGGG
T ss_pred CCHHHHHHhhC-----CCCeEEEEECCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhcccCcCHHHh-CCCC
Confidence 89999988775 689999999999999999884 5578888 789999999999874321 1111111 0145
Q ss_pred cEEEEcCCCCCCCCC-CcEEEEEech
Q 038499 290 DAIFLSTHKFLGGPG-SPGILLMTKA 314 (609)
Q Consensus 290 D~v~~S~hK~lggp~-g~G~L~~~~~ 314 (609)
++++.|++|++|.|+ .+|+++++++
T Consensus 307 ~i~~~S~SK~~g~~GlRiG~~~~~~~ 332 (546)
T 2zy4_A 307 TLLVYSFSKYFGATGWRLGVVAAHQQ 332 (546)
T ss_dssp EEEEEESTTTTTCGGGCEEEEEEESS
T ss_pred EEEEEeCccccCCCCcceEEEEECCH
Confidence 788999999997443 4899999886
|
| >3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.2e-17 Score=182.28 Aligned_cols=358 Identities=12% Similarity=0.037 Sum_probs=206.3
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+..|+ -|+|..++ |..++.|.+++.+++.... .+.. ..........+++++++++++.+
T Consensus 44 ~~G~~l~d~~G~---~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~~~--~~~~---~~~~~~~~~~~lae~l~~~~~~~ 115 (472)
T 3hmu_A 44 ARGVWLNDSEGE---EILDAMAGLWCVNIGYGRDELAEVAARQMRELP--YYNT---FFKTTHVPAIALAQKLAELAPGD 115 (472)
T ss_dssp EEBTEEEETTCC---EEECTTHHHHTCTTCBCCHHHHHHHHHHHHHCS--CCCS---SSSEECHHHHHHHHHHHHHSCTT
T ss_pred eecCEEEECCCC---EEEECCCchhhccCCCCCHHHHHHHHHHHHhcc--cccc---ccccCCHHHHHHHHHHHHhCCCC
Confidence 344445444453 48998753 5567899999998886532 1111 01112345678889999999876
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc-Cc-----------eE
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS-LA-----------EV 205 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~-G~-----------~v 205 (609)
.+ .|+|+++|+. ++..+++++-. . . ...-++++. .|++....||......... +. .+
T Consensus 116 ~~-~v~~~~sGse-A~~~aik~a~~-~------~-~~~g~~~~~-~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~ 184 (472)
T 3hmu_A 116 LN-HVFFAGGGSE-ANDTNIRMVRT-Y------W-QNKGQPEKT-VIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDV 184 (472)
T ss_dssp EE-EEEEESSHHH-HHHHHHHHHHH-H------H-HHTTCTTCC-EEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSE
T ss_pred CC-EEEEeCCHHH-HHHHHHHHHHH-H------H-HhcCCCCCC-EEEEEcCcCCCccHHhhhccCChhhccccCCCCCc
Confidence 65 8999965655 55555554310 0 0 000013333 4555555555544333222 21 34
Q ss_pred EEEecCC-----CCCCC--------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 206 VEIGLDD-----DGLLD--------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 206 v~v~~~~-----~g~ld--------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
+.++... ++ .| +++|+++|++.. .+++++++++.+++++|.+.+ +++|.++|++||+++|+
T Consensus 185 ~~v~~p~~~~~~~~-~~~~~~~~~~~~~le~~i~~~~-~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~ 262 (472)
T 3hmu_A 185 HHINQPNWWAEGGD-MDPEEFGLARARELEEAILELG-ENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIA 262 (472)
T ss_dssp EEECCCCHHHHCTT-CCHHHHHHHHHHHHHHHHHHHC-GGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEE
T ss_pred EEeCCCccccCCcc-cCHHHHHHHHHHHHHHHHHhcC-CCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEE
Confidence 5555322 11 34 788988886421 135778889889999999987 99999999999999999
Q ss_pred eccccC-Ccccc--cCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCC--CccCCCceEeecccccccc
Q 038499 269 DFAASG-PYVEI--DVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPP--STCGGGTVNYVNGFNEKDT 342 (609)
Q Consensus 269 D~A~~~-~~~~i--d~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p--~~~ggg~v~~~~~~~~~~~ 342 (609)
|++++. +.... ..... .-..|++++| |.++|. ..+|++++++++. +.+.+ ...++ +
T Consensus 263 DEv~~gfgr~G~~~a~~~~-~v~pdi~t~s--K~l~gg~~plG~v~~~~~i~--~~~~~~~~~~~~-t------------ 324 (472)
T 3hmu_A 263 DEVICGFGRTGNWFGTQTM-GIRPHIMTIA--KGLSSGYAPIGGSIVCDEVA--HVIGKDEFNHGY-T------------ 324 (472)
T ss_dssp ECTTTTTTTTSSSCHHHHH-TCCCSEEEEC--GGGTTTSSCCEEEEEEHHHH--HHHTTSCBCCCC-T------------
T ss_pred EccccCCcccCccchhHHh-CCCCceeeec--hhhhcCCcceEEEEECHHHH--HhcccCCccccC-C------------
Confidence 999873 22210 00000 0145888765 999876 3689999999883 23211 11110 0
Q ss_pred cccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHH-HHHHHHHHHhC---CCCceEEeCCCCCCCcceEEEE
Q 038499 343 LYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE-TYIERALERLL---PNQNIKILGNTSTKRQAILSFN 418 (609)
Q Consensus 343 ~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~-~l~~~~~~~L~---~~p~i~v~~~~~~~r~~~~~f~ 418 (609)
..+.|.......+++... +. +.+.++.+ ++.+++++.|+ .+|.+..+.+ ...++.+.
T Consensus 325 ----------~~~np~a~aAa~aaL~~~--~~---~~~~~~~~~~~~~~l~~~L~~l~~~~~v~~vr~----~G~~~~i~ 385 (472)
T 3hmu_A 325 ----------YSGHPVAAAVALENLRIL--EE---ENILDHVRNVAAPYLKEKWEALTDHPLVGEAKI----VGMMASIA 385 (472)
T ss_dssp ----------TTTCHHHHHHHHHHHHHH--HH---TTHHHHHHHTHHHHHHHHHHGGGGSTTEEEEEE----ETTEEEEE
T ss_pred ----------CCCCHHHHHHHHHHHHHH--HH---hHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cCceEEEE
Confidence 012222222223334332 21 23344444 55555555553 3455543322 23455555
Q ss_pred eccCCCCCcCCCCCCCCCCCCC------ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCC
Q 038499 419 IHSSTINSSLGENTKTETDKPL------HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVG 492 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l------~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~ 492 (609)
+.. ... ..... ....+++.|.+ .||.++++
T Consensus 386 ~~~-~~~----------~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-------------------------------- 421 (472)
T 3hmu_A 386 LTP-NKA----------SRAKFASEPGTIGYICRERCFA-NNLIMRHV-------------------------------- 421 (472)
T ss_dssp ECS-CGG----------GTCCBSSCTTHHHHHHHHHHHH-TTBCCEEE--------------------------------
T ss_pred Eec-Ccc----------ccccccchhHHHHHHHHHHHHH-CCcEEEec--------------------------------
Confidence 543 110 00000 14567787866 49988842
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 493 VKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 493 ~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.+++||++++..|++|+++++++|+++++..
T Consensus 422 --g~~iRi~p~~~~t~e~i~~~l~~l~~~l~~~ 452 (472)
T 3hmu_A 422 --GDRMIISPPLVITPAEIDEMFVRIRKSLDEA 452 (472)
T ss_dssp --TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred --CCEEEEECCCCCCHHHHHHHHHHHHHHHHHH
Confidence 1689999999999999999999999988654
|
| >3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.6e-18 Score=186.63 Aligned_cols=335 Identities=12% Similarity=0.022 Sum_probs=193.3
Q ss_pred EEecCCCCC------CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTASG------RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~g------~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
-|+|+.++. ..++.|.+++.+.+..... . +. ......++++.++++++ +.+ +|+|+++|+. +
T Consensus 54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~--~~----~~~~~~~l~~~la~~~~-~~~-~v~~~~~Gse-a 121 (429)
T 3k28_A 54 EYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS---F--GA----PTEIENKLAKLVIERVP-SIE-IVRMVNSGTE-A 121 (429)
T ss_dssp EEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSC---C--SS----CCHHHHHHHHHHHHHST-TCS-EEEEESSHHH-H
T ss_pred EEEECCCChhhcccCCCCHHHHHHHHHHHhhCcC---c--CC----CCHHHHHHHHHHHHhCC-CCC-EEEEeCChHH-H
Confidence 489988653 3588999999888764311 1 01 12346678889999987 444 8999965555 5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc-hHHHHHHcCc-------------------eEEEEecCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS-NLLSWRQSLA-------------------EVVEIGLDD 212 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s-~~~~~~~~G~-------------------~vv~v~~~~ 212 (609)
+..++.+.. ...+++ .|++.+..||+ ........|. +++.++.+
T Consensus 122 ~~~ai~~a~-------------~~~~~~--~vi~~~~~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (429)
T 3k28_A 122 TMSALRLAR-------------GYTGRN--KILKFIGCYHGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN- 185 (429)
T ss_dssp HHHHHHHHH-------------HHHTCC--EEEEEETCCCCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETT-
T ss_pred HHHHHHHHH-------------HhhCCC--EEEEECCCcCCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCC-
Confidence 555554431 012334 45554444443 3222222222 23333332
Q ss_pred CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccccC---CCCC
Q 038499 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDV---RSGQ 285 (609)
Q Consensus 213 ~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~---~~~~ 285 (609)
|+++|+++++++. +++++++++.++|++|.+.+ +++|.++|++||+++|+|+++..- ..-.+ ...
T Consensus 186 ----d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~- 257 (429)
T 3k28_A 186 ----DLESVKYAFEQFG--DDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGF-RVAYNCGQGYY- 257 (429)
T ss_dssp ----CHHHHHHHHHHHG--GGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHH-
T ss_pred ----CHHHHHHHHHhCC--CCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccccc-ccCcchHHHHh-
Confidence 8999999997431 35778888888888999988 999999999999999999998632 11000 000
Q ss_pred CCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC--hhHHHHH
Q 038499 286 TDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT--PQVIQMI 363 (609)
Q Consensus 286 ~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt--p~i~~~~ 363 (609)
....|++++ +|.+|++..+|++++++++ ++.+.+.. .....+| .+.++.
T Consensus 258 ~~~~di~t~--sK~~~~G~~iG~~~~~~~~--~~~~~~~~------------------------~~~~~~t~~~~~~a~- 308 (429)
T 3k28_A 258 GVTPDLTCL--GKVIGGGLPVGAYGGKAEI--MRQVAPSG------------------------PIYQAGTLSGNPLAM- 308 (429)
T ss_dssp TCCCSEEEE--CGGGGTTSCCEEEEECHHH--HTTBTTTS------------------------SBCCCCTTTTCHHHH-
T ss_pred CCCCceehh--hhhhcCCCCeEEEEEcHHH--HhhhccCC------------------------CccccCCCCCChHHH-
Confidence 013577655 5999876678999999988 44443210 0001112 222222
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCC
Q 038499 364 RAALAFWVKEYIGHEVIKKQEETYIERALERLLPN----QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP 439 (609)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
.++++.+ +... +.+.++.+++++++.+.|.++ +.+.... ....++.+.+.. ....+. ..-.....
T Consensus 309 aaa~aal--~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~~~~~~~~~-~~~~~~---~~~~~~~~ 377 (429)
T 3k28_A 309 AAGYETL--VQLT-PESYVEFERKAEMLEAGLRKAAEKHGIPHHIN----RAGSMIGIFFTD-EPVINY---DAAKSSNL 377 (429)
T ss_dssp HHHHHHH--HTCC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEE----EETTEEEEESSS-SCCCSH---HHHTTSCH
T ss_pred HHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHhhCCCCEEEE----eeccEEEEEEec-CCcccc---cccccccH
Confidence 2222221 2222 667777777777777777543 3221111 122444454432 100000 00000000
Q ss_pred CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 440 LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 440 l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
.....+.+.|.+ .||.++++. .+.+|+++ ..|++|+++++++|+
T Consensus 378 ~~~~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~r~~~--~~t~e~i~~~l~~l~ 421 (429)
T 3k28_A 378 QFFAAYYREMVE-QGVFLPPSQ---------------------------------FEGLFLST--VHSDADIEATIAAAE 421 (429)
T ss_dssp HHHHHHHHHHHH-TTEECCSST---------------------------------TSCBCCCT--TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCeEEecCC---------------------------------CCCEEEEC--CCCHHHHHHHHHHHH
Confidence 113567777766 599988541 25578764 579999999999999
Q ss_pred HHHHhc
Q 038499 520 FIAIYG 525 (609)
Q Consensus 520 ~v~~~~ 525 (609)
++++..
T Consensus 422 ~~l~~~ 427 (429)
T 3k28_A 422 IAMSKL 427 (429)
T ss_dssp HHHHTC
T ss_pred HHHHHH
Confidence 988754
|
| >3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=3.9e-19 Score=189.67 Aligned_cols=338 Identities=12% Similarity=0.063 Sum_probs=202.1
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH-HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA-AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS 193 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta-al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s 193 (609)
.+.......+.+..++.+++|.+.....+++ +|+|+ ++.+++.+.. +. ..+++ .|+++...|.|
T Consensus 92 ~~~~~~~~e~~~~~~~~~~lGlp~~~~~~lV-~GaT~~~~a~~L~aar--------~~----~~~~~--~viv~r~aHkS 156 (450)
T 3bc8_A 92 GSSLLNKITNSLVLNVIKLAGVHSVASCFVV-PMATGMSLTLCFLTLR--------HK----RPKAK--YIIWPRIDQKS 156 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTCCEEEEE-SSCHHHHHHHHHHHHH--------HH----CTTCC--EEEEECCCCHH
T ss_pred CCcHHHHHHHHHHHHHHHhCCCCCCceEEEE-CCHHHHHHHHHHHHcc--------hh----hcCCC--EEEEECCcHHH
Confidence 3444567788899999999999866555777 66664 3333333321 10 12254 68888999999
Q ss_pred hHHHHHHcCceEEEEec---CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 194 NLLSWRQSLAEVVEIGL---DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 194 ~~~~~~~~G~~vv~v~~---~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
...++...|+.++.|+. ++.+.+|+++|+++|+++.. +.+.+|+.+..++.+|.+.|+++|+++||+||++++||+
T Consensus 157 v~kAl~l~Gl~p~~v~~~~~~~~~~id~~~le~aI~~~~~-~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~ 235 (450)
T 3bc8_A 157 CFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGP-EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNN 235 (450)
T ss_dssp HHHHHHHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCG-GGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEEC
T ss_pred HHHHHHHcCCeeEEEEeeecCccCCcCHHHHHHHHHhcCC-CCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEEC
Confidence 99999999999988865 45678999999999986521 234455555555556799999999999999999999999
Q ss_pred cccCCccccc-C--CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 271 AASGPYVEID-V--RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 271 A~~~~~~~id-~--~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
||++-...+. + ..+...++|+++.|+|||++.|.+.+++++++... ++.....+.|.
T Consensus 236 A~G~~~~~~~~l~~~a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~-~~~~~~~~~g~------------------- 295 (450)
T 3bc8_A 236 AYGLQSSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPF-IQDISKMYPGR------------------- 295 (450)
T ss_dssp TTTTTCHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHH-HHHHHHHSCSC-------------------
T ss_pred CCchhhhhhHhHHHHHhcccCCCEEEECCccCCCchhccEEEEecCHHH-HHHHHHHhhcC-------------------
Confidence 9886432211 0 00001378999999999999999989999865431 22211111110
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeCCCCCCCcce-EEEEeccCC
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ---NIKILGNTSTKRQAI-LSFNIHSST 423 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~~~~~~r~~~-~~f~~~~~~ 423 (609)
..++|. +...+.-+.+ ...+++.+.++..++++++.+.|++++ ++++++.. ..++ ..+.+.. -
T Consensus 296 -----~s~Sps-L~l~~~l~~~---G~~g~~~~i~~~~~~a~~l~~~l~~~~~~~g~~~l~~~---~~~~~~~~~l~~-~ 362 (450)
T 3bc8_A 296 -----ASASPS-LDVLITLLSL---GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTP---HNPISLAMTLKT-I 362 (450)
T ss_dssp -----BCSHHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCT---TCSSEEEEECTT-T
T ss_pred -----CcccHH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCceecCCc---cCCCcceeeccc-c
Confidence 112232 1111111111 233556666677888899999998887 88888753 1121 1121111 0
Q ss_pred CCCcCCCCCCCCCCCCCChHHHHHHHhhh--cCcEecc-CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEE
Q 038499 424 INSSLGENTKTETDKPLHGPFVATLLNDL--FGIQARG-GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRI 500 (609)
Q Consensus 424 ~~~~~~~~~~~~~~~~l~~~~v~~~L~~~--~GI~v~~-G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRl 500 (609)
. .....+...+.-.+... -|..+.+ |.. ..-.++.|.+.+.. .+.....++=+
T Consensus 363 ~-----------~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~-~~~~~~~l~~~gi~------------~E~~~~~~i~~ 418 (450)
T 3bc8_A 363 D-----------GHHDKAVTQLGSMLFTRQVSGARAVPLGNV-QTVSGHTFRGFMSH------------ADNYPCAYLNA 418 (450)
T ss_dssp S-----------SSSSCHHHHHHHHHHHTTCCSCEEECSCCE-EEETTEEEETTTTT------------SSCCSSCEEEE
T ss_pred c-----------ccccCCCceeEEEecCCCCccceeeecccc-cchhHHHHHHcCCe------------eecCCCCcEEE
Confidence 0 00002233343333221 1222220 000 00000111100000 01123578888
Q ss_pred ecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 501 SFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 501 s~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++..++++|+++++++|+++....
T Consensus 419 ~~sig~~~~di~~l~~~L~~~~~~~ 443 (450)
T 3bc8_A 419 AAAIGMKMQDVDLFIKRLDKCLNIV 443 (450)
T ss_dssp ECCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999987543
|
| >3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-17 Score=180.32 Aligned_cols=368 Identities=11% Similarity=0.034 Sum_probs=208.7
Q ss_pred CCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCC
Q 038499 65 KNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQ 138 (609)
Q Consensus 65 ~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~ 138 (609)
.+.++.+..|+ -|+|..++ |..++.|.+++.+.+....... . . ........++.++++++++.+.
T Consensus 44 ~G~~~~d~~G~---~ylD~~s~~~~~~lGh~~p~v~~A~~~~l~~~~~~~-~---~--~~~~~~~~~la~~l~~~~~~~~ 114 (476)
T 3i5t_A 44 EGIYVHTEDGR---RLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYAS-P---W--YMATSPAARLAEKIATLTPGDL 114 (476)
T ss_dssp EBTEEEETTCC---EEEETTHHHHTCTTCBCCHHHHHHHHHHHHHCCCCC-T---T--TCBCHHHHHHHHHHHTTSSTTC
T ss_pred ecCEEEECCCC---EEEECCCchhhccCCCCCHHHHHHHHHHHHhccCcc-c---C--ccCCHHHHHHHHHHHhcCCCCc
Confidence 34444444453 38887644 5568899999998886531101 0 0 1224567788899999987666
Q ss_pred CCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcC------------ceE
Q 038499 139 EDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSL------------AEV 205 (609)
Q Consensus 139 ~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G------------~~v 205 (609)
+ .|+|+++|+.+ +..+++++-.. ....-++++. .|++....||+... .....| ..+
T Consensus 115 ~-~v~~~~sGseA-~~~Aik~a~~~--------~~~~g~~~~~-~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~ 183 (476)
T 3i5t_A 115 N-RIFFTTGGSTA-VDSALRFSEFY--------NNVLGRPQKK-RIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRI 183 (476)
T ss_dssp C-EEEEESSHHHH-HHHHHHHHHHH--------HHHTTCTTCC-EEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTE
T ss_pred C-EEEEeCchHHH-HHHHHHHHHHH--------HHhcCCCCCC-EEEEEcCCcCcCChhhccccCChhhccccCCCCCCc
Confidence 5 89999666664 55554443100 0000013333 45555555554443 332222 123
Q ss_pred EEEecCC--CC-CCC--------HHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEec
Q 038499 206 VEIGLDD--DG-LLD--------IEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 206 v~v~~~~--~g-~ld--------~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~ 270 (609)
..++... .+ ..| +++|++++++.. .+++++++++.++|++|.+.+ +++|.++|++||+++|+|+
T Consensus 184 ~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~-~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DE 262 (476)
T 3i5t_A 184 SFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLG-PDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDE 262 (476)
T ss_dssp EEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHC-GGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEEC
T ss_pred EEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcC-CCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEe
Confidence 3443221 11 112 789999887421 135789999999999998766 8999999999999999999
Q ss_pred cccC-Cccc--ccCC-CCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc
Q 038499 271 AASG-PYVE--IDVR-SGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 271 A~~~-~~~~--id~~-~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
+++. +... ..+. ... -..|++++| |.++|. ..+|++++++++ .+.+.+.....+. +.
T Consensus 263 v~~g~gr~G~~~~~~~~~~-v~pdi~t~s--K~l~~G~~plg~v~~~~~i--~~~~~~~~~~~~~--~~----------- 324 (476)
T 3i5t_A 263 VVTGFGRCGEWFASEKVFG-VVPDIITFA--KGVTSGYVPLGGLAISEAV--LARISGENAKGSW--FT----------- 324 (476)
T ss_dssp TTTTTTTTSSSCHHHHTTC-CCCSEEEEC--GGGGTTSSCCEEEEECHHH--HHTTSGGGCTTCE--EC-----------
T ss_pred cccCCccccCceeeecccC-CCcchhhhh--hhhcCCCcCeEEEEECHHH--HHHHhcCCccccc--cc-----------
Confidence 9873 2221 1111 110 145888765 999876 568999999988 3344321000000 00
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC---CCceEEeCCCCCCCcceEEEEeccC
Q 038499 346 EDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP---NQNIKILGNTSTKRQAILSFNIHSS 422 (609)
Q Consensus 346 ~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~---~p~i~v~~~~~~~r~~~~~f~~~~~ 422 (609)
......+.|.......+++... +. +.+.++.+++.+++++.|+. +|.+....+ ...++.+.+..
T Consensus 325 ---~~~t~~~np~a~aAa~aaL~~~--~~---~~~~~~~~~~~~~l~~~L~~l~~~~~v~~v~~----~G~~~~i~~~~- 391 (476)
T 3i5t_A 325 ---NGYTYSNQPVACAAALANIELM--ER---EGIVDQAREMADYFAAALASLRDLPGVAETRS----VGLVGCVQCLL- 391 (476)
T ss_dssp ---CCCTTTTCHHHHHHHHHHHHHH--HH---TTHHHHHHHHHHHHHHHHHTTTTSTTEEEEEE----ETTEEEEEECC-
T ss_pred ---ccCCCCcCHHHHHHHHHHHHHH--Hh---HHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEe----cCceeEEEEec-
Confidence 0000122232222223344332 21 33455666666666666654 454543322 23444554443
Q ss_pred CCCCcCCCCCCCCCCCCC-----ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 423 TINSSLGENTKTETDKPL-----HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 423 ~~~~~~~~~~~~~~~~~l-----~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
... ..... ....+++.|.++ ||.+++. .++
T Consensus 392 ~~~----------~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~----------------------------------g~~ 426 (476)
T 3i5t_A 392 DPT----------RADGTAEDKAFTLKIDERCFEL-GLIVRPL----------------------------------GDL 426 (476)
T ss_dssp C---------------CCHHHHHHHHHHHHHHHHT-TEECEEE----------------------------------TTE
T ss_pred Ccc----------ccccccchhHHHHHHHHHHHHC-CCEEEec----------------------------------CCE
Confidence 110 00001 145677777664 9988731 268
Q ss_pred EEEecCCCCCHHHHHHHHHHHHHHHHhccccc
Q 038499 498 TRISFPYYMSNEEFEFTLEALEFIAIYGQRFL 529 (609)
Q Consensus 498 iRls~~~~~t~eeid~ll~al~~v~~~~~~~~ 529 (609)
+||++++..|++|+++++++|+++++...+.+
T Consensus 427 iRi~p~l~~t~e~i~~~l~~l~~~l~~~~~~~ 458 (476)
T 3i5t_A 427 CVISPPLIISRAQIDEMVAIMRQAITEVSAAH 458 (476)
T ss_dssp EEECCCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999987765544
|
| >3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=3.8e-18 Score=183.48 Aligned_cols=203 Identities=11% Similarity=0.083 Sum_probs=131.2
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
-|+|..++ |..++.|.+++.+.+.... +.. + ......+++++++++++ +++ +|+|++ |.+++
T Consensus 53 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~---~~~-~-----~~~~~~~la~~l~~~~~-~~~-~v~~~~-ggsea 120 (427)
T 3fq8_A 53 RYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT---SFG-A-----PCALENVLAEMVNDAVP-SIE-MVRFVN-SGTEA 120 (427)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCS---CCS-S-----CCHHHHHHHHHHHHHST-TCS-EEEEES-SHHHH
T ss_pred EEEECCCchhhhccCCCCHHHHHHHHHHHHhCC---CcC-C-----CCHHHHHHHHHHHHhCC-CCC-EEEEeC-CHHHH
Confidence 48888755 2358899999988886431 110 1 23557788899999998 444 899995 44556
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH-HHcC-------------------ceEEEEecCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW-RQSL-------------------AEVVEIGLDD 212 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~-~~~G-------------------~~vv~v~~~~ 212 (609)
+..++.+.. ....++ .|++....||+..... ...+ ..+..++.+
T Consensus 121 ~~~al~~a~-------------~~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 184 (427)
T 3fq8_A 121 CMAVLRIMR-------------AYTGRD--KIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN- 184 (427)
T ss_dssp HHHHHHHHH-------------HHHCCC--EEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-
T ss_pred HHHHHHHHH-------------HhhCCC--EEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-
Confidence 666654321 012233 3555444555422111 1111 124445443
Q ss_pred CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCC
Q 038499 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSG 284 (609)
Q Consensus 213 ~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~ 284 (609)
|+++|+++++++ .+++++++++.++|++|.+.+ +++|.++|++||+++|+|++++.-.. ..+...
T Consensus 185 ----d~~~le~~l~~~--~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~g~~~g~~~~~~~~~- 257 (427)
T 3fq8_A 185 ----DLEAVKALFAEN--PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGGVQEKFG- 257 (427)
T ss_dssp ----CHHHHHHHHHHS--TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBTTTBTTHHHHHTT-
T ss_pred ----CHHHHHHHHHhC--CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCcchhhHhcC-
Confidence 899999999852 136789999999999999999 99999999999999999999872200 011111
Q ss_pred CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCC
Q 038499 285 QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP 322 (609)
Q Consensus 285 ~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~ 322 (609)
...|++++| |.+++...+|++++++++ ++.+.
T Consensus 258 --~~~di~t~s--K~~~~G~~~G~~~~~~~~--~~~~~ 289 (427)
T 3fq8_A 258 --VTPDLTTLG--KIIGGGLPVGAYGGKREI--MQLVA 289 (427)
T ss_dssp --CCCSEEEEC--GGGGTTSSCEEEEECHHH--HTTBT
T ss_pred --CCCChhhhh--hhhhCCcceEEEEEcHHH--HHhhc
Confidence 135776555 999854458999999988 44443
|
| >3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-18 Score=184.80 Aligned_cols=193 Identities=13% Similarity=0.013 Sum_probs=140.9
Q ss_pred HHHHHHHHHhhcCC-ccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCC-cEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 91 RYIENYIINNVLPF-YGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQED-AMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 91 ~~v~~ai~~~~~~~-~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
..|.+++.+..... ..+..++ +..+. ..++++++.+++++|.+... +++|+ +|+ +++..++..+
T Consensus 38 ~~vl~A~~~~~~~~~~~~~~~g-~~y~~---~~~~~l~~~la~~~g~~~~~~~i~~~-sGt-~Ai~~al~al-------- 103 (431)
T 3ht4_A 38 FRVLESFGKHKISDSHFIPTTG-YGYDD---IGRDTLEKVYADVFGAEAGLVRPQII-SGT-HAISTALFGI-------- 103 (431)
T ss_dssp HHHHHHHHHTTCCGGGSCCCCT-TCCSC---HHHHHHHHHHHHHTTCSEECCBTTSC-SHH-HHHHHHHHTT--------
T ss_pred HHHHHHHHHhchhhhhcCCCCC-CCCCh---hhHHHHHHHHHHHhCCCcccccceee-CHH-HHHHHHHHHh--------
Confidence 46777776653321 1122221 22221 23778999999999987441 22355 775 5677766554
Q ss_pred HHHHHhhhcCCCceEEEECC-CCccchHHHH----------HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEE
Q 038499 169 REKLIKCLRDEERWVVFVGP-HEHHSNLLSW----------RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~-~~h~s~~~~~----------~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
+++|| .|++.. ..|.+....+ +..|++++.++.++++.+|+++|+++++ +++++|
T Consensus 104 -------~~~Gd--~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~-----~~tk~V 169 (431)
T 3ht4_A 104 -------LRPGD--ELLYITGKPYDTLEEIVGVRGKGVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH-----SNTKMI 169 (431)
T ss_dssp -------CCTTC--EEEECSSSCCTTHHHHTTSSSCSSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC-----TTEEEE
T ss_pred -------CCCCC--EEEEeCCCCchhHHHHHhhcccccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC-----CCCeEE
Confidence 47898 688887 7888776544 3479999999998889999999999998 689999
Q ss_pred EEec----ccCccccccCHHHHHHHHHH--hCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCC---CCCcEE
Q 038499 238 SFSA----CSNVTGIYSDTRSIARLLHQ--YGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGG---PGSPGI 308 (609)
Q Consensus 238 ~~s~----~sn~TG~~~dl~~I~~la~~--~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lgg---p~g~G~ 308 (609)
++++ +++++|.+.|+++|+++|++ +|+++++|++++.+....+.... ++|+++.|+||++|| |.| |+
T Consensus 170 ~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~~~~~~---g~Di~~~S~sK~lgg~~~~~G-G~ 245 (431)
T 3ht4_A 170 GIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQEPCHV---GADLMAGSLIKNPGGGIVKTG-GY 245 (431)
T ss_dssp EEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSCCGGGT---TCSEEEEETTSGGGTTTCSSC-EE
T ss_pred EEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCCCcccc---CCeEEEcCccccCCCCCCCce-EE
Confidence 9996 44555556778999999999 99999999998877543322222 689999999999887 566 99
Q ss_pred EEEechh
Q 038499 309 LLMTKAL 315 (609)
Q Consensus 309 L~~~~~~ 315 (609)
+++++++
T Consensus 246 v~~~~~l 252 (431)
T 3ht4_A 246 IVGKEQY 252 (431)
T ss_dssp EEECHHH
T ss_pred EEecHHH
Confidence 9999887
|
| >3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.1e-18 Score=177.31 Aligned_cols=356 Identities=16% Similarity=0.160 Sum_probs=212.9
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCC-CchhhHHHH-HHHHHHHHHHHHHhCCCCCC---cEEEeCChHHHHHHHHHHHhc
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTC-DSYVGQHTT-NMVHEASNYIKKCLGGGQED---AMIFCGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~-~~~~~~~~~-~~~~e~r~~ia~~~g~~~~~---~vift~sGttaal~~l~~~l~ 161 (609)
....+.|++++-..+...|+....+ .|+.|.... +...-++++.+++||++... +| -.-||+.+++......
T Consensus 64 N~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~lF~a~~A~w~VNV-QP~SGs~AN~avy~Al-- 140 (490)
T 3ou5_A 64 NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNV-QPYSGSPANLAVYTAL-- 140 (490)
T ss_dssp CCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHHHTTCCTTTEEEEC-CCSSHHHHHHHHHHHH--
T ss_pred CcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHHHhCCCccccCCCC-CcCCHHHHHHHHHHHH--
Confidence 3567789999888887777543322 244555544 44555778899999998652 23 3348999877666544
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH--------HHHcCc--eEEEEecCC-CCCCCHHHHHHHHhhhcc
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS--------WRQSLA--EVVEIGLDD-DGLLDIEALRSKLELYKD 230 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--------~~~~G~--~vv~v~~~~-~g~ld~e~L~~al~~~~~ 230 (609)
++|||+ |+..+..|.+.+.- ....|. +++.+++++ ++.+|.+++++...+
T Consensus 141 --------------l~PGD~--ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~IDyd~~~~~A~~--- 201 (490)
T 3ou5_A 141 --------------LQPHDR--IMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL--- 201 (490)
T ss_dssp --------------CC-CCC--EECBC----------------------------CBCEETTTTEECHHHHHHHHHH---
T ss_pred --------------cCCCCE--EEecccCCCCcccccccCCCcccccccccccccccccCCCCCcccHHHHHHHHhh---
Confidence 489994 88888777665421 122232 455556664 689999999999887
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~ 310 (609)
.+|++|++-....+ ...|.+++.++|++.|+++++|.||..|.+.-.+.+-....+|++++|.||.|.||.| |+++
T Consensus 202 -~kPklIi~G~SaY~--r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGPrG-G~Il 277 (490)
T 3ou5_A 202 -FRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLIF 277 (490)
T ss_dssp -HCCSEEEECCSSCC--SCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSCSC-EEEE
T ss_pred -cCCCeEEECCccCc--cccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCCCc-eEEE
Confidence 58999887654443 6789999999999999999999998765443333332234689999999999999997 9999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccc---cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE---SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETY 387 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~---~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (609)
.+++... ..+- .+... ...+.+.+.... ..|.|-...+.+.+++|............++..++
T Consensus 278 ~~~~~~~---~~~k--~~~~~---------~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~N 343 (490)
T 3ou5_A 278 YRKGVKA---VDPK--TGREI---------PYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKN 343 (490)
T ss_dssp EECSEEE---ECC----CCEE---------ECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHH
T ss_pred ecccccc---cccc--ccchh---------HHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 9886510 0000 00000 001111111111 12334333333334444321222356677788888
Q ss_pred HHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh
Q 038499 388 IERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY 467 (609)
Q Consensus 388 ~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~ 467 (609)
++.+.+.|.+. |++|+.... ....+.+.+.+ . .+++..+.+.| ++.||.+.--. -|.
T Consensus 344 AkaLA~~L~~~-G~~vvsGgT--dnHlvLvDl~~-~---------------g~tG~~ae~~L-e~agItvNkN~---iP~ 400 (490)
T 3ou5_A 344 ARAMADALLER-GYSLVSGGT--DNHLVLVDLRP-K---------------GLDGARAERVL-ELVSITANKNT---CPG 400 (490)
T ss_dssp HHHHHHHHHHT-TCEEGGGSC--SSSEEEEECGG-G---------------TCCHHHHHHHH-HHTTEECEEEC---CTT
T ss_pred HHHHHHHHHhC-CCeeecCCC--CceEEEEeccc-c---------------CCCHHHHHHHH-HHcCcEECCCC---CCC
Confidence 88888888876 899986432 22334444443 1 25677787777 66799876211 121
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhcc
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP----YYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~----~~~t~eeid~ll~al~~v~~~~~ 526 (609)
-.. ...++.|||..+ .-+.++|++.+.+.|.+++..+.
T Consensus 401 D~s---------------------p~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~~~~ 442 (490)
T 3ou5_A 401 DRS---------------------AITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGL 442 (490)
T ss_dssp CCC---------------------SSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---------------------CCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHHhhh
Confidence 100 012578999864 45689999999999999886544
|
| >4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.7e-17 Score=173.87 Aligned_cols=205 Identities=14% Similarity=0.097 Sum_probs=126.6
Q ss_pred EEecCCCCC------CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTASG------RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~g------~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
.|+|+.++. ..++.|.+++.+.+..... .. + ......+++++++++++ ..+ +|+|+++|++ +
T Consensus 54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~---~~-~-----~~~~~~~la~~l~~~~~-~~~-~v~~~~sGse-a 121 (429)
T 4e77_A 54 AYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLS---FG-A-----PTEMEVKMAQLVTDLVP-TMD-MVRMVNSGTE-A 121 (429)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSC---CS-S-----CCHHHHHHHHHHHHHST-TCS-EEEEESSHHH-H
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhCcc---cC-C-----CCHHHHHHHHHHHhhCC-CCC-EEEEeCcHHH-H
Confidence 589987653 3578899999988865321 10 1 12456778899999987 444 8999955555 5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH-HHHHcC-------------------ceEEEEecCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-SWRQSL-------------------AEVVEIGLDD 212 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-~~~~~G-------------------~~vv~v~~~~ 212 (609)
+..++++.. ....++ .|++....||+... .....+ ..+..++.+
T Consensus 122 ~~~al~~a~-------------~~~~~~--~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 185 (429)
T 4e77_A 122 TMSAIRLAR-------------GYTGRD--KIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN- 185 (429)
T ss_dssp HHHHHHHHH-------------HHHCCC--EEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTT-
T ss_pred HHHHHHHHH-------------HhhCCC--EEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-
Confidence 666555321 012333 45555555554432 111111 122333322
Q ss_pred CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcc--cccCCCCCC
Q 038499 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYV--EIDVRSGQT 286 (609)
Q Consensus 213 ~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~--~id~~~~~~ 286 (609)
|+++|++++++. .+++++++++.+++.+|.+.+ +++|.++|++||+++|+|++++.... ....... .
T Consensus 186 ----d~~~le~~l~~~--~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~g~r~g~~~~~~~~-~ 258 (429)
T 4e77_A 186 ----DLASVRQAFEQY--PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAGAQDYY-H 258 (429)
T ss_dssp ----CHHHHHHHHHHS--TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTTBTTTBTTCHHHHT-T
T ss_pred ----CHHHHHHHHHhc--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCcccCcchHHHhc-C
Confidence 899999999742 135677777777777888888 99999999999999999999882200 0001111 0
Q ss_pred CCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCC
Q 038499 287 DGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP 322 (609)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~ 322 (609)
...|++++ +|.++++.++|++++++++ ++.+.
T Consensus 259 ~~pdi~t~--sK~~~~G~~~G~~~~~~~~--~~~l~ 290 (429)
T 4e77_A 259 VIPDLTCL--GKIIGGGMPVGAFGGRREV--MNALA 290 (429)
T ss_dssp CCCSEEEE--EGGGGTTSCCEEEEECHHH--HTTBT
T ss_pred CCCCeeee--cccccCCCCeEEEEECHHH--HHHhc
Confidence 13477655 5999865568999999988 44443
|
| >2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.7e-17 Score=177.23 Aligned_cols=337 Identities=12% Similarity=0.026 Sum_probs=192.7
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
.|+|..++ |..++.|.+++.+.+... . +.. + ......+++++++++++ ..+ +|+|+++|+. +
T Consensus 57 ~~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~--~-~~~-~-----~~~~~~~l~~~la~~~~-~~~-~v~~~~sgse-A 124 (434)
T 2epj_A 57 RIVDLVLAYGPLILGHKHPRVLEAVEEALARG--W-LYG-A-----PGEAEVLLAEKILGYVK-RGG-MIRFVNSGTE-A 124 (434)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC--S-CCS-S-----CCHHHHHHHHHHHHHHC-TTC-EEEEESSHHH-H
T ss_pred EEEEcccchhcccCCCCCHHHHHHHHHHHHhC--C-CCC-C-----CCHHHHHHHHHHHHhCC-CCC-EEEEeCCHHH-H
Confidence 47887643 346788999998887642 1 111 1 23456788999999995 344 8999955555 5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH--------------HcCc------eEEEEecCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR--------------QSLA------EVVEIGLDD 212 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~--------------~~G~------~vv~v~~~~ 212 (609)
+..++++.. .+..++ .|++....||+....+. ..|+ ++..++.+
T Consensus 125 ~~~al~~ar-------------~~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~- 188 (434)
T 2epj_A 125 TMTAIRLAR-------------GYTGRD--LILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN- 188 (434)
T ss_dssp HHHHHHHHH-------------HHHCCC--EEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-
T ss_pred HHHHHHHHH-------------HhhCCC--eEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-
Confidence 666655410 012344 35555555555322111 1232 35666642
Q ss_pred CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCccc--ccCCCCCC
Q 038499 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVE--IDVRSGQT 286 (609)
Q Consensus 213 ~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~--id~~~~~~ 286 (609)
|+++|++++++.. +++++++++..+++||.+.| +++|.++|++||+++|+|++++.-... ..+... .
T Consensus 189 ----d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~-~ 261 (434)
T 2epj_A 189 ----DVEALERVFAEYG--DRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEGAQGYF-N 261 (434)
T ss_dssp ----CHHHHHHHHHHHG--GGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTTTTTSSTTHHHHHH-T
T ss_pred ----CHHHHHHHHHhCC--CCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchhceeCCcchhhHHh-C
Confidence 8999999997421 25788888888888999998 999999999999999999998832110 000000 0
Q ss_pred CCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc-CCChhHHHHHHH
Q 038499 287 DGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES-GGTPQVIQMIRA 365 (609)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~-~gtp~i~~~~~a 365 (609)
...|++ |++|.+++...+|++++++++ ++.+.+. + .. ..... .+.+.......+
T Consensus 262 ~~~di~--s~sK~l~~G~~~G~v~~~~~~--~~~l~~~--~-~~------------------~~~~t~~~~~~~~aa~~a 316 (434)
T 2epj_A 262 IEGDII--VLGKIIGGGFPVGAVAGSREV--MSLLTPQ--G-KV------------------FNAGTFNAHPITMAAGLA 316 (434)
T ss_dssp CCCSEE--EEEGGGGTTSSCEEEEECHHH--HTTBTTT--S-SB------------------CCCCTTTTCHHHHHHHHH
T ss_pred CCCCee--eecchhcCCcceeeeeecHHH--HHhhccC--C-Cc------------------ccCCCCCcCHHHHHHHHH
Confidence 135776 455999874458999999988 4444321 0 00 00000 122222222234
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCC
Q 038499 366 ALAFWVKEYIGHEVIKKQEETYIERALERLLPN----QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLH 441 (609)
Q Consensus 366 al~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~ 441 (609)
+++.. +. +.+.++.+++.+++.+.|+++ +-..... ....++++.+.. ...... ..........
T Consensus 317 ~l~~~--~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~----~~g~~~~i~~~~-~~~~~~---~~~~~~~~~~ 383 (434)
T 2epj_A 317 TLKAL--EE---EPVYSVSREAAKALEEAASEVLDRTGLPYTIN----RVESMMQLFIGV-EEVSNA---AQARKADKKF 383 (434)
T ss_dssp HHHHH--HH---SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEEE----EETTEEEEEETC-SCCSSH---HHHTTSCHHH
T ss_pred HHHHH--Hh---cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE----EeeeEEEEEEeC-CCcccc---hhccccCHHH
Confidence 44433 22 234566666777777776543 2111111 123455555432 000000 0000000012
Q ss_pred hHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 442 GPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 442 ~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
...+.+.|.+ .||.+++|. ...+|++ ..+|++|+++++++|+++
T Consensus 384 ~~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~~~~--~~~t~e~i~~~l~~l~~~ 427 (434)
T 2epj_A 384 YVKLHEEMLR-RGVFIAPSN---------------------------------LEAVFTG--LPHQGEALEIAVEGLRSS 427 (434)
T ss_dssp HHHHHHHHHH-TTEECCSST---------------------------------TSCEECC--TTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-CCeEEeccC---------------------------------CCcEEEe--ccCCHHHHHHHHHHHHHH
Confidence 4568888865 599998541 1235554 568999999999999998
Q ss_pred HHh
Q 038499 522 AIY 524 (609)
Q Consensus 522 ~~~ 524 (609)
++.
T Consensus 428 l~~ 430 (434)
T 2epj_A 428 LKT 430 (434)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
|
| >1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-17 Score=180.32 Aligned_cols=349 Identities=12% Similarity=0.034 Sum_probs=190.9
Q ss_pred eEEecCCCC------CCChHHHHHHHHHhhcCC-ccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHH
Q 038499 78 LTYADHTAS------GRSLRYIENYIINNVLPF-YGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTT 150 (609)
Q Consensus 78 ~vyld~~a~------g~~~~~v~~ai~~~~~~~-~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtt 150 (609)
..|+|..++ |..++.|.+++.+++... +.+... + ......++.+++.+.++++++.+.+ .|+|+.+|+.
T Consensus 63 ~~ylD~~~g~~~~~lGh~~p~v~~A~~~~~~~~~~~~~~~--~-~~~~~~~l~~~la~~l~~~~~~~~~-~v~f~~sGse 138 (472)
T 1ohv_A 63 NRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPA--L-GILPPENFVEKLRESLLSVAPKGMS-QLITMACGSC 138 (472)
T ss_dssp CEEEESSHHHHTCSSCBTCHHHHHHHHCGGGHHHHHCCCC--T-TTSCBTTHHHHHHHTGGGGCCTTCC-EEEEESSHHH
T ss_pred CEEEECCCCHhhcccCCCCHHHHHHHHHHHhhcccccccc--c-ccccHHHHHHHHHHHHHHhCCCCcC-EEEEeCCchh
Confidence 358998643 556889999998875421 111110 0 0011133445555556666654554 8999977777
Q ss_pred HHHHHHHHHhcccc----hh----hHHH--HHHhhhcCCC-ceEEEECCCCccchHH-HHHHcCce--------E---EE
Q 038499 151 AAIKRLQEVMGIAV----PS----ILRE--KLIKCLRDEE-RWVVFVGPHEHHSNLL-SWRQSLAE--------V---VE 207 (609)
Q Consensus 151 aal~~l~~~l~~~~----~~----~~~~--~~~~~l~~gd-~~~Vlv~~~~h~s~~~-~~~~~G~~--------v---v~ 207 (609)
+ +..++++.-... .+ ..++ .....-.+|. +..|++....||+... .....|.. + ..
T Consensus 139 A-~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~ 217 (472)
T 1ohv_A 139 S-NENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPI 217 (472)
T ss_dssp H-HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCE
T ss_pred H-HHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcc
Confidence 5 444443321000 00 0000 0000001341 1256665555555443 33333321 1 12
Q ss_pred EecCC-CC-------------CCCHHHHHHHHhhhcc-CCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 208 IGLDD-DG-------------LLDIEALRSKLELYKD-AKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 208 v~~~~-~g-------------~ld~e~L~~al~~~~~-~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
++... .. ..|+++|+++|+++.. ..++++|+++.++|++|.+.| +++|.++|++||+++|+
T Consensus 218 ~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~ 297 (472)
T 1ohv_A 218 APFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLV 297 (472)
T ss_dssp ECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEE
T ss_pred cCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 22211 00 1268899999974211 017889999989999999888 99999999999999999
Q ss_pred ecccc-CCccc--ccCCCCCCC-CccEEEEcCCCC-CCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccc
Q 038499 269 DFAAS-GPYVE--IDVRSGQTD-GYDAIFLSTHKF-LGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTL 343 (609)
Q Consensus 269 D~A~~-~~~~~--id~~~~~~~-~~D~v~~S~hK~-lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~ 343 (609)
|++++ ++... +.+...... .+|++++| |. +|| |+++ ++++ ....+...++ +
T Consensus 298 DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~s--K~~l~G----G~~~-~~~~---~~~~~~~~~~-T------------- 353 (472)
T 1ohv_A 298 DEVQTGGGSTGKFWAHEHWGLDDPADVMTFS--KKMMTG----GFFH-KEEF---RPNAPYRIFN-T------------- 353 (472)
T ss_dssp ECTTTTTTTTSSSSGGGGGCCSSCCSEEEEC--GGGSSE----EEEE-CGGG---SCSSSSSSCC-S-------------
T ss_pred eCcccCCCCCCCchhccccCCCCCCCEEEEc--cccccC----CccC-chhh---cccccccccC-c-------------
Confidence 99987 34332 122222100 16887665 98 563 6665 5554 2222211110 0
Q ss_pred ccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----Cc-eEEeCCCCCCCcceEEEE
Q 038499 344 YLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN----QN-IKILGNTSTKRQAILSFN 418 (609)
Q Consensus 344 ~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----p~-i~v~~~~~~~r~~~~~f~ 418 (609)
..+.+.......++++... . +.+.++.+++++++.+.|.++ |+ +.-..+ ...++.+.
T Consensus 354 ---------~~~~~~~~aaa~aal~~~~--~---~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~----~g~~~~~~ 415 (472)
T 1ohv_A 354 ---------WLGDPSKNLLLAEVINIIK--R---EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRG----RGTFCSFD 415 (472)
T ss_dssp ---------SSSCHHHHHHHHHHHHHHH--H---TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEE----ETTEEEEE
T ss_pred ---------cCccHHHHHHHHHHHHHHH--h---CCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecC----CceEEEEE
Confidence 0122222223334444432 2 234566677777777776543 42 322211 23455553
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEE
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWT 498 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~i 498 (609)
+.. . .....+++.|.+ .||.++++ ..+++
T Consensus 416 ~~~-~----------------~~~~~~~~~l~~-~Gv~~~~~---------------------------------g~~~i 444 (472)
T 1ohv_A 416 TPD-E----------------SIRNKLISIARN-KGVMLGGC---------------------------------GDKSI 444 (472)
T ss_dssp CSS-H----------------HHHHHHHHHHHH-TTEECEEE---------------------------------TTTEE
T ss_pred eCC-h----------------hHHHHHHHHHHH-CCeEEecC---------------------------------CCCEE
Confidence 322 1 124577888866 59988742 03789
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 499 RISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 499 Rls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
|+++++.+|++|+++++++|+++++.
T Consensus 445 Ri~~~~~~t~e~i~~~~~~l~~~l~~ 470 (472)
T 1ohv_A 445 RFRPTLVFRDHHAHLFLNIFSDILAD 470 (472)
T ss_dssp EECCCTTCCHHHHHHHHHHHHHHHHT
T ss_pred EEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999998764
|
| >2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.7e-16 Score=170.38 Aligned_cols=205 Identities=17% Similarity=0.055 Sum_probs=125.8
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
.|+|..++ |..++.|.+++.+.+... .+.. ...+...++.+++++.++ +.+ +|+|+++ ++++
T Consensus 58 ~~iD~~~~~~~~~lg~~~~~v~~a~~~~~~~~---~~~~------~~~~~~~~la~~l~~~~~-~~~-~v~~~~g-g~eA 125 (453)
T 2cy8_A 58 VYLDFFGGHGALVLGHGHPRVNAAIAEALSHG---VQYA------ASHPLEVRWAERIVAAFP-SIR-KLRFTGS-GTET 125 (453)
T ss_dssp EEEESCTTTTSCTTCBTCHHHHHHHHHHHTTT---CSSC------SSCHHHHHHHHHHHHHCT-TCS-EEEEESC-HHHH
T ss_pred EEEECcccHhhcccCCCCHHHHHHHHHHHHhC---CCCC------CCCHHHHHHHHHHHhhCC-CCC-EEEEeCC-HHHH
Confidence 47888544 446788999998887542 1111 134567778888888876 444 8999954 4556
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH-----------cCc------eEEEEecCCCCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ-----------SLA------EVVEIGLDDDGL 215 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-----------~G~------~vv~v~~~~~g~ 215 (609)
+..++.+.. .+..++ .|++.+..||+....+.. .|+ .+..++.
T Consensus 126 ~~~al~~ar-------------~~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~----- 185 (453)
T 2cy8_A 126 TLLALRVAR-------------AFTGRR--MILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP----- 185 (453)
T ss_dssp HHHHHHHHH-------------HHHCCC--EEEEECC----------------------------CGGGEEEECT-----
T ss_pred HHHHHHHHH-------------HhhCCC--EEEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----
Confidence 777666510 012233 355555556543322111 133 2444443
Q ss_pred CCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCccc--ccCCCCCCCCc
Q 038499 216 LDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVE--IDVRSGQTDGY 289 (609)
Q Consensus 216 ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~--id~~~~~~~~~ 289 (609)
.|+++|++++++.. +++++++++.++|+||.+.| +++|.++|++||+++|+|++++.-... ..+.... -..
T Consensus 186 ~d~~~le~~l~~~~--~~~~~vi~ep~~~~tG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~~~g~~~~~~~~~-~~~ 262 (453)
T 2cy8_A 186 DDIEGMREVFANHG--SDIAAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHGMQALLD-VQP 262 (453)
T ss_dssp TCHHHHHHHHHHHG--GGEEEEEECSSEHHHHTEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTCTTHHHHHHT-CCC
T ss_pred CCHHHHHHHHHhcC--CCEEEEEECCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecCccccccCchhhhHHhC-CCC
Confidence 38999999997421 35778888777788999988 999999999999999999998732110 0010010 135
Q ss_pred cEEEEcCCCCCCCCCCcEEEEEechhhccCCCC
Q 038499 290 DAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP 322 (609)
Q Consensus 290 D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~ 322 (609)
|++ |++|+++++..+|++++++++ ++.+.
T Consensus 263 di~--s~sK~l~~G~~~G~v~~~~~~--~~~l~ 291 (453)
T 2cy8_A 263 DLT--CLAKASAGGLPGGILGGREDV--MGVLS 291 (453)
T ss_dssp SEE--EEEGGGGTTSSCEEEEECHHH--HTTSS
T ss_pred cEE--EEChhhhCCcceEEEechHHH--HHHhc
Confidence 766 455999865568999999988 44443
|
| >3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0 | Back alignment and structure |
|---|
Probab=99.75 E-value=1.8e-17 Score=177.04 Aligned_cols=295 Identities=14% Similarity=0.078 Sum_probs=183.0
Q ss_pred HHHHHHHHHHHh-CC-----CCCC-cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 123 VHEASNYIKKCL-GG-----GQED-AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 123 ~~e~r~~ia~~~-g~-----~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
..++|+.+++++ +. +++. ++++| +|+++++..++.++. .+.+ | .|+++.+.|+.+.
T Consensus 74 ~~~lr~aia~~~~~~~~~~~~~~~i~i~~t-~G~~~al~~~~~~l~-------------~~~~-d--~Vlv~~P~y~~~~ 136 (405)
T 3k7y_A 74 TEDFSTLTQNLIFGNNSKYIEDKKICTIQC-IGGTGAIFVLLEFLK-------------MLNV-E--TLYVTNPPYINHV 136 (405)
T ss_dssp CHHHHHHHHHHHHCSSCTTTTTTCEEEEEE-EHHHHHHHHHHHHHH-------------TTTC-C--EEEEESSCCHHHH
T ss_pred cHHHHHHHHHHHcCCCCccccccceEEEEc-CchHHHHHHHHHHHH-------------hcCC-C--EEEEeCCCCHhHH
Confidence 345666666665 21 1222 35777 788889999888763 0126 7 7999999999999
Q ss_pred HHHHHcCceEEEEec-CC-CCCCCHHHHHHHHhhhccCCCceEEEEecc-cCccccccCH---HHHHHHHHHhCCeEEEe
Q 038499 196 LSWRQSLAEVVEIGL-DD-DGLLDIEALRSKLELYKDAKRPILGSFSAC-SNVTGIYSDT---RSIARLLHQYGGFACFD 269 (609)
Q Consensus 196 ~~~~~~G~~vv~v~~-~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~-sn~TG~~~dl---~~I~~la~~~g~~vivD 269 (609)
..++..|++++.+++ ++ ++.+|+++|++++++. +++++++++.+ +||||.+.+. ++|+++|++||+++|+|
T Consensus 137 ~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~---~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~D 213 (405)
T 3k7y_A 137 NMIESRGFNLKYINFFDYNLIDINYDLFLNDLRNI---PNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFD 213 (405)
T ss_dssp HHHHTTTCEEEEECCEETTTTEECHHHHHHHHHHS---CSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHcCCeEEEEeccccccCCcCHHHHHHHHHhC---CCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEe
Confidence 999999999999998 33 4789999999999742 35678777655 8999999884 56888999999999999
Q ss_pred ccccCCc-ccc-----cCCCC-CCCCccEEEEcCCCCCCCC-CCcEEEEE---echhhccCCCCCCccCCCceEeecccc
Q 038499 270 FAASGPY-VEI-----DVRSG-QTDGYDAIFLSTHKFLGGP-GSPGILLM---TKALYQLGSFPPSTCGGGTVNYVNGFN 338 (609)
Q Consensus 270 ~A~~~~~-~~i-----d~~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~---~~~~~~l~~~~p~~~ggg~v~~~~~~~ 338 (609)
+++..-. ... .+..+ .....-+++.|++|.++-| ..+|++++ ++++ +..+...
T Consensus 214 e~Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlRiG~~~~~~~~~~~--~~~~~~~-------------- 277 (405)
T 3k7y_A 214 IAYQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGERAGALHIVCKNQEE--KKIVFNN-------------- 277 (405)
T ss_dssp ESCTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTTTEEEEEEECSSHHH--HHHHHHH--------------
T ss_pred cCcccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccccceEEEEEeCCHHH--HHHHHHH--------------
Confidence 9975321 100 01110 0112347778999999833 45999875 3333 1111000
Q ss_pred cccccccccccccccCCCh-hHHHHH-HHHHHHH-HHH--hcCHHHHHHHHHHHHHHHHHHhC----CCC---ceEEeCC
Q 038499 339 EKDTLYLEDIEERESGGTP-QVIQMI-RAALAFW-VKE--YIGHEVIKKQEETYIERALERLL----PNQ---NIKILGN 406 (609)
Q Consensus 339 ~~~~~~~~~~~~r~~~gtp-~i~~~~-~aal~~~-~~~--~~g~~~i~~~~~~l~~~~~~~L~----~~p---~i~v~~~ 406 (609)
+.. ..+.....+ .+.+.+ .+++.-- +.+ ....+.++++.++.++++.+.|+ ++. ++++..+
T Consensus 278 ------l~~-~~~~~~~~~~~~~q~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~~p 350 (405)
T 3k7y_A 278 ------LCF-IVRKFYSSPVIHTNRILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKK 350 (405)
T ss_dssp ------HHH-HHHTTTSSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGGSS
T ss_pred ------HHH-HHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccccC
Confidence 000 001111222 233322 1111110 000 01234556667888888888887 652 1344433
Q ss_pred CCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHH
Q 038499 407 TSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAI 486 (609)
Q Consensus 407 ~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~ 486 (609)
..+++.|.-.+ . ++++.| +++||.+.+|
T Consensus 351 ----~gg~f~~~~l~--------------------~-~~~~~L-~~~gV~v~p~-------------------------- 378 (405)
T 3k7y_A 351 ----QRGLFSFVPLL--------------------A-KIAEHL-KTHHIYIINN-------------------------- 378 (405)
T ss_dssp ----CCSSEEECGGG--------------------G-GGTTTT-TTTTEECCTT--------------------------
T ss_pred ----CceEEEecCCC--------------------H-HHHHHH-HHCCEeecCC--------------------------
Confidence 45666654333 2 234556 6679988732
Q ss_pred hhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 487 QKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 487 ~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+ |||+.. .+++++++++++|++++++
T Consensus 379 ---------~--Ris~a~-~~~~~i~~~~~~i~~~~~~ 404 (405)
T 3k7y_A 379 ---------G--RINVSG-ITKNNVDYIADKICLSLSQ 404 (405)
T ss_dssp ---------S--EEEGGG-CCTTHHHHHHHHHHHHHHC
T ss_pred ---------C--eEEEec-cCHHHHHHHHHHHHHHHhh
Confidence 2 999952 4779999999999998764
|
| >2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-16 Score=170.27 Aligned_cols=332 Identities=14% Similarity=0.029 Sum_probs=188.3
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
.|+|..++ |..++.|.+++.+.+... .+.. .......+++++++++++ +.+ +|+|+++|+. +
T Consensus 53 ~~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~~---~~~~------~~~~~~~~l~~~l~~~~~-~~~-~v~~~~~g~e-a 120 (424)
T 2e7u_A 53 RYLDYVMSWGPLILGHAHPKVLARVRETLERG---LTFG------APSPLEVALAKKVKRAYP-FVD-LVRFVNSGTE-A 120 (424)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHHTC---SCCS------SCCHHHHHHHHHHHHHCT-TCC-EEEEESSHHH-H
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhC---CCCC------CCCHHHHHHHHHHHHhCC-CCC-EEEEeCCHHH-H
Confidence 47787643 456788999998887641 1111 123456788899999986 444 8999955555 5
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH--------------HcC------ceEEEEecCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR--------------QSL------AEVVEIGLDD 212 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~--------------~~G------~~vv~v~~~~ 212 (609)
+..++++.. .+..++ .|++.+..||+....+. ..| .+++.++.
T Consensus 121 ~~~al~~ar-------------~~~~~~--~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~-- 183 (424)
T 2e7u_A 121 TMSALRLAR-------------GYTGRP--YIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEY-- 183 (424)
T ss_dssp HHHHHHHHH-------------HHHCCC--EEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECT--
T ss_pred HHHHHHHHH-------------HhhCCC--EEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCC--
Confidence 666655310 012334 35555555555332211 112 23555554
Q ss_pred CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCccc--ccCCCCCC
Q 038499 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVE--IDVRSGQT 286 (609)
Q Consensus 213 ~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~--id~~~~~~ 286 (609)
.|+++|++++++.. +++++++++..+++||.+.| +++|.++ ++||+++|+|++++.-... ..+... .
T Consensus 184 ---~d~~~le~~l~~~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~g~~~g~~~~~~~~-~ 256 (424)
T 2e7u_A 184 ---NDPEGLREVLKRRG--EEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMTGFRLAFGGATELL-G 256 (424)
T ss_dssp ---TCHHHHHHHHHHHG--GGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTTTTTSSTTHHHHHH-T
T ss_pred ---CCHHHHHHHHHhCC--CCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCccccccchhHHHHHh-C
Confidence 38999999997421 25667777666666999888 9999999 9999999999998832111 000000 0
Q ss_pred CCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc-CCChhHHHHHHH
Q 038499 287 DGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES-GGTPQVIQMIRA 365 (609)
Q Consensus 287 ~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~-~gtp~i~~~~~a 365 (609)
...|++ |++|++|++..+|++++++++ ++.+.+... . ..... .+.+.......+
T Consensus 257 ~~~di~--s~sK~l~~G~~~G~~~~~~~~--~~~~~~~~~---~------------------~~~~t~~~~~~~~aaa~a 311 (424)
T 2e7u_A 257 LKPDLV--TLGKILGGGLPAAAYAGRREI--MEKVAPLGP---V------------------YQAGTLSGNPLAMAAGLA 311 (424)
T ss_dssp CCCSEE--EECGGGGTTSSCEEEEECHHH--HTTBTTTSS---B------------------CCCCTTCSCHHHHHHHHH
T ss_pred CCcchh--hhhhhhhCCcceEEEEEcHHH--HhhhcccCC---c------------------ccCCCCCCCHHHHHHHHH
Confidence 135765 567999875568999999988 444433100 0 00000 112222222234
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC----Cce-EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCC-CCCCC
Q 038499 366 ALAFWVKEYIGHEVIKKQEETYIERALERLLPN----QNI-KILGNTSTKRQAILSFNIHSSTINSSLGENTKT-ETDKP 439 (609)
Q Consensus 366 al~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~----p~i-~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~-~~~~~ 439 (609)
++... +. .+.+.++.+++.+++.+.|+++ +-+ .+.+ ...++++.+.. ....+ ... .....
T Consensus 312 al~~~--~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~-----~g~~~~i~~~~-~~~~~----~~~~~~~~~ 377 (424)
T 2e7u_A 312 TLELL--EE--NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTVNR-----VGSMITVFFTE-GPVVT----FQDARRTDT 377 (424)
T ss_dssp HHHHH--HH--CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEEEE-----ETTEEEEESSS-SCCCS----HHHHTTSCH
T ss_pred HHHHH--Hh--ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEEEe-----eceEEEEEEeC-CCCcc----hhhhcccCH
Confidence 44432 22 1456677777778887777653 221 1221 23455554432 00000 000 00000
Q ss_pred CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 440 LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 440 l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
.....+.+.|.+ .||.+++|. ...+|++ ...|++|+++++++|+
T Consensus 378 ~~~~~~~~~l~~-~Gv~v~~~~---------------------------------~~~~~~~--~~~t~~~i~~~l~~l~ 421 (424)
T 2e7u_A 378 ELFKRFFHGLLD-RGIYWPPSN---------------------------------FEAAFLS--VAHREEDVEKTLEALR 421 (424)
T ss_dssp HHHHHHHHHHHT-TTEECCSSS---------------------------------SSCEECC--TTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-CCeEEeccC---------------------------------CCceEee--ccCCHHHHHHHHHHHH
Confidence 124567788865 699998542 1235655 5689999999999998
Q ss_pred HH
Q 038499 520 FI 521 (609)
Q Consensus 520 ~v 521 (609)
++
T Consensus 422 ~~ 423 (424)
T 2e7u_A 422 KA 423 (424)
T ss_dssp HH
T ss_pred Hh
Confidence 75
|
| >3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-16 Score=167.65 Aligned_cols=326 Identities=13% Similarity=0.071 Sum_probs=195.7
Q ss_pred HHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCC-CceEEEECCCCccchHHHHHHcCce
Q 038499 126 ASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE-ERWVVFVGPHEHHSNLLSWRQSLAE 204 (609)
Q Consensus 126 ~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G~~ 204 (609)
+.++|+.+ |.+.....+++ +|+|+++..++.+.. +. -+|+ + .|+++...|.|...++...|++
T Consensus 122 ~ld~L~~~-G~~~~~~~flV-nGsTgg~lamilaa~-------r~-----~rpg~d--~VIvpRn~HKSv~kAliL~Gl~ 185 (501)
T 3hl2_A 122 VLDIIKLA-GVHTVANCFVV-PMATGMSLTLCFLTL-------RH-----KRPKAK--YIIWPRIDQKSCFKSMITAGFE 185 (501)
T ss_dssp HHHHHHHT-TCTTCCEEEEE-SSCHHHHHHHHHHHH-------HH-----HCTTCC--EEEEECCCCHHHHHHHHHTTCE
T ss_pred HHHHHHHc-CCCCCCcEEEE-CcHHHHHHHHHHHHc-------Cc-----ccCCCC--EEEEecchHHHHHHHHHHcCCe
Confidence 44555555 88865456777 788865555444331 10 1234 5 7999999999999999999999
Q ss_pred EEEEec---CCCCCCCHHHHHHHHhhhccCCCceEEEEecc-cCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc
Q 038499 205 VVEIGL---DDDGLLDIEALRSKLELYKDAKRPILGSFSAC-SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID 280 (609)
Q Consensus 205 vv~v~~---~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~-sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id 280 (609)
+++|+. ++...+|+++++++|+++. ....++++..+ .+-.|...|+++|+++||+||++++||+||++-.....
T Consensus 186 Pv~V~p~~d~~~~~id~e~le~aI~e~g--a~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~ 263 (501)
T 3hl2_A 186 PVVIENVLEGDELRTDLKAVEAKVQELG--PDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCM 263 (501)
T ss_dssp EEEECEEEETTEEEECHHHHHHHHHHHC--GGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHH
T ss_pred EEEEeeeecccccCCCHHHHHHHHHhcC--CCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhh
Confidence 999976 3346789999999998751 13344444433 34355779999999999999999999999887432211
Q ss_pred ---CCCCCCCC-ccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 281 ---VRSGQTDG-YDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 281 ---~~~~~~~~-~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
...+. .| +|+++.|+||++..|-|.|+++.+++-+ ++.+...++| + ..++
T Consensus 264 ~lp~sA~~-~GrAD~vVqS~HK~llvpIGG~ii~~~d~e~-l~~~~~~yPG-----------------------r-~S~S 317 (501)
T 3hl2_A 264 HLIQQGAR-VGRIDAFVQSLDKNFMVPVGGAIIAGFNDSF-IQEISKMYPG-----------------------R-ASAS 317 (501)
T ss_dssp HHHHHHHH-HSCCCEEEEEHHHHHCCCSSCEEEEESCHHH-HHHHHHTSCS-----------------------C-BCSH
T ss_pred hhHHHHHh-cCCCcEEEecccccceeecCceEEEeCCHHH-HHHHHHhCCC-----------------------C-CCCc
Confidence 01111 14 8999999999998887756666665321 2222111111 0 1222
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCC
Q 038499 357 PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ---NIKILGNTSTKRQAILSFNIHSSTINSSLGENTK 433 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~ 433 (609)
|. ..+..+.+.+ ...|+..+.++..++++++.+.|+++. |-+++.. +.-+|-.-.... ...
T Consensus 318 ps-ldl~~tLL~l---Gr~Gy~~ll~e~~ela~~L~~~L~~la~~~ge~ll~~---~~n~is~a~tl~-~~~-------- 381 (501)
T 3hl2_A 318 PS-LDVLITLLSL---GSNGYKKLLKERKEMFSYLSNQIKKLSEAYNERLLHT---PHNPISLAMTLK-TLD-------- 381 (501)
T ss_dssp HH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCBCCC---TTCSSEEEEECT-TSC--------
T ss_pred HH-HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhcCC---CCCceeEEEecc-ccc--------
Confidence 32 2222333333 344678888999999999999988753 3455543 233333222222 110
Q ss_pred CCCCCCCChHHHHHHHhhhcCcE----eccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHH
Q 038499 434 TETDKPLHGPFVATLLNDLFGIQ----ARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNE 509 (609)
Q Consensus 434 ~~~~~~l~~~~v~~~L~~~~GI~----v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~e 509 (609)
........++..+|..+ +|. |..|..-. -.++.+.+.+-- . ......++-++...-++++
T Consensus 382 --~~~~~~~t~~gs~Lf~r-~vsG~Rvv~~~~~~~-i~g~~f~~~g~h---------~---~~~~~~yl~~a~aiG~~~~ 445 (501)
T 3hl2_A 382 --EHRDKAVTQLGSMLFTR-QVSGARVVPLGSMQT-VSGYTFRGFMSH---------T---NNYPCAYLNAASAIGMKMQ 445 (501)
T ss_dssp --TTTSCHHHHHHHHHHHT-TCCSCEEECTTCCEE-ETTEEESSTTTT---------S---SCCSSCEEEEECCTTCCHH
T ss_pred --ccccccHHHHHHHHHhc-CCCcceeecCCCceE-ECCeeecCcccC---------C---CCCCchHHHHHHHcCCCHH
Confidence 00011344666666543 442 11111000 011222222210 0 1112478899988889999
Q ss_pred HHHHHHHHHHHHHHhccc
Q 038499 510 EFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 510 eid~ll~al~~v~~~~~~ 527 (609)
|||.+++.|+++.....+
T Consensus 446 ~v~~~~~~l~~~~~~~~~ 463 (501)
T 3hl2_A 446 DVDLFIKRLDRCLKAVRK 463 (501)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999886553
|
| >4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-15 Score=163.73 Aligned_cols=339 Identities=12% Similarity=0.033 Sum_probs=198.7
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh-CCC--CCC-cEEEeCChHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL-GGG--QED-AMIFCGSGTTAAIK 154 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~-g~~--~~~-~vift~sGttaal~ 154 (609)
+|.|.....+.++.|.++....+.+ ..+|. |....+ ..++|+.+++++ |.. .+. ..+-| .|.|.++.
T Consensus 53 ~y~d~~g~~~vl~~Vk~A~~~~~~~--~~~~~--Y~p~~G----~p~lr~aia~~~~g~~~~~~~~~~~qt-~ggtga~~ 123 (420)
T 4h51_A 53 AYRDEQGRPYPLRVVRKAEQLLLDM--NLDYE--YLPISG----YQPFIDEAVKIIYGNTVELENLVAVQT-LSGTGAVS 123 (420)
T ss_dssp CCBCTTSCBCCCHHHHHHHHHHHHT--TCCCC--CCCTTC----CHHHHHHHHHHHHC---CGGGEEEEEE-EHHHHHHH
T ss_pred cccCCCCCCCCCHHHHHHHHHHhcC--CCCCC--CCCcCC----hHHHHHHHHHHhcCCCccccccceeee-cCchHHHH
Confidence 5778777778888888886554432 11221 222222 345566666654 322 221 22334 56666666
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEE-EEecC--CCCCCCHHHHHHHHhhhccC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVV-EIGLD--DDGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv-~v~~~--~~g~ld~e~L~~al~~~~~~ 231 (609)
..+..+... ...||| .|+++++.|+.+...++..|++.+ ..+.. .+..+|.+.+.+.+... .
T Consensus 124 ~a~~~l~~~-----------~~~pgd--~V~ip~P~w~~y~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~~~l~~~--~ 188 (420)
T 4h51_A 124 LGAKLLTRV-----------FDAETT--PIYLSDPTWPNHYGVVKAAGWKNICTYAYYDPKTVSLNFEGMKKDILAA--P 188 (420)
T ss_dssp HHHHHHTTT-----------SCTTTS--CEEEEESCCTHHHHHHHHTTCCCEEEEECEEGGGTEECHHHHHHHHHHS--C
T ss_pred HHHHHHHHh-----------cCCCCC--EEEEecCCchhHHHHHHHcCCeEEEeeccccccccCCCHHHHHHHHhcc--C
Confidence 655544211 136888 699999999999999999999744 33332 35678999998888642 2
Q ss_pred CCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCC-cccccCCC-----C-CCCCccEEEEcCCCCCC
Q 038499 232 KRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGP-YVEIDVRS-----G-QTDGYDAIFLSTHKFLG 301 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~-~~~id~~~-----~-~~~~~D~v~~S~hK~lg 301 (609)
+++++++++.|+||||...+ +++|+++|+++++++++|+++..- +...+... . .....-+++.|++|.++
T Consensus 189 ~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~ 268 (420)
T 4h51_A 189 DGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMG 268 (420)
T ss_dssp SSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSC
T ss_pred CCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEeccccccc
Confidence 56788889999999999977 567899999999999999996532 11111000 0 01123467789999987
Q ss_pred CCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCCh-hHHHHHHHHHHHH---HHH--h
Q 038499 302 GPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP-QVIQMIRAALAFW---VKE--Y 374 (609)
Q Consensus 302 gp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp-~i~~~~~aal~~~---~~~--~ 374 (609)
-++ .+|++++..... ...... ...+.. -.+.....+ ...+.+. +..+. +.. .
T Consensus 269 ~~G~RvG~~~~~~~~~--~~~~~~-----------------~~~l~~-~~r~~~s~~p~~~a~~~-~~~l~d~~l~~~~~ 327 (420)
T 4h51_A 269 LYSERAGTLSLLLKDK--TKRADV-----------------KSVMDS-LIREEYTCPPAHGARLA-HLILSNNELRKEWE 327 (420)
T ss_dssp CGGGCEEEEEEECSCH--HHHHHH-----------------HHHHHH-HHHTTTSSCCHHHHHHH-HHHHHSHHHHHHHH
T ss_pred cccCceEEEEecccCH--HHHHHH-----------------HHHHHH-hhhcccCcchHHHHHHH-HHHhcCHHHHHHHH
Confidence 543 499999876541 110000 000000 011112233 3333221 11111 000 1
Q ss_pred cCHHHHHHHHHHHHHHHHHHhCCCC--c-eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhh
Q 038499 375 IGHEVIKKQEETYIERALERLLPNQ--N-IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLND 451 (609)
Q Consensus 375 ~g~~~i~~~~~~l~~~~~~~L~~~p--~-i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~ 451 (609)
...+.++++.+++++.+.+.|.++. + +..+. +..+.|+|. + ++.++ +++|.
T Consensus 328 ~~~~~m~~r~~~~R~~l~~~L~~~g~~~~~~~i~----~q~GmF~~~--g------------------ls~e~-v~~L~- 381 (420)
T 4h51_A 328 AELSAMAERIRTMRRTVYDELLRLQTPGSWEHVI----NQIGMFSFL--G------------------LSKAQ-CEYCQ- 381 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH----HCCSSEEEC--C------------------CCHHH-HHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCeec----CCCceEEec--C------------------cCHHH-HHHHH-
Confidence 1245677888888888888887641 1 11111 123556553 2 34444 46674
Q ss_pred hcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 452 LFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 452 ~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
++||.+.+| | |||+.. .+++.|++++++|.+++++..
T Consensus 382 e~~Vy~~~~-----------------------------------g--Ris~Ag-l~~~ni~~~a~aI~~vvr~i~ 418 (420)
T 4h51_A 382 NHNIFITVS-----------------------------------G--RANMAG-LTHETALMLAQTINDAVRNVN 418 (420)
T ss_dssp HTTEECCTT-----------------------------------C--EEEGGG-CCHHHHHHHHHHHHHHHC---
T ss_pred hCCEEEcCC-----------------------------------C--EEEecc-CCHHHHHHHHHHHHHHHHHhh
Confidence 579876521 3 999853 689999999999999987654
|
| >4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=4e-14 Score=152.35 Aligned_cols=340 Identities=16% Similarity=0.163 Sum_probs=194.0
Q ss_pred eEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 78 LTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 78 ~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
.-|+|+.++ |-..+.|.+++.+++.... +...+ +....++.+.|++.+.. . +.|.|++|||++
T Consensus 87 ~~ylD~~~g~~~~~lGH~hp~v~~Av~~q~~~~~---~~~~~------~~~~~~lae~l~~~~p~-~-~~v~f~~SGsEA 155 (454)
T 4ao9_A 87 HRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGI---NLTGH------NLLEGRLARLICERFPQ-I-EQLRFTNSGTEA 155 (454)
T ss_dssp CEEEESSGGGGTTTTCSCCHHHHHHHHHHHHTCS---CCCSE------ESSHHHHHHHHHHHSTT-C-SEEEEESSHHHH
T ss_pred CEEEEccccHHhhcccCCCHHHHHHHHHHHhcCC---CccCC------cHHHHHHHHHHHHhCCC-C-CEEEEeCchHHH
Confidence 359998754 4467899999988886431 11111 11244677788888863 2 389999899887
Q ss_pred HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH-H-----cCceEEEEecCCCCCCCHHHHHHHH
Q 038499 152 AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR-Q-----SLAEVVEIGLDDDGLLDIEALRSKL 225 (609)
Q Consensus 152 al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~-~-----~G~~vv~v~~~~~g~ld~e~L~~al 225 (609)
....+-.+.. . .|.+ .|+.-...||.....+. . .......+|.+ |++++++.+
T Consensus 156 ~e~AiklAr~--------------~-tgr~-~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l 214 (454)
T 4ao9_A 156 NLMALTAALH--------------F-TGRR-KIVVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQI 214 (454)
T ss_dssp HHHHHHHHHH--------------H-HTCC-EEEEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHH
T ss_pred HHHHHHHHHh--------------c-ccCC-eEEEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHH
Confidence 5444432221 1 1222 45555555554321111 0 11234445543 899999999
Q ss_pred hhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccccCC-CCCCCCccEEEEcCCCCC
Q 038499 226 ELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDVR-SGQTDGYDAIFLSTHKFL 300 (609)
Q Consensus 226 ~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~~-~~~~~~~D~v~~S~hK~l 300 (609)
+++. +++..|++..+....|.+.| +++|.++|++||+++|+|+++.+ -...... +...-..|+++++ |.+
T Consensus 215 ~~~~--~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~~g~lLI~DEV~tG-R~G~~~a~e~~gv~PDi~t~g--K~l 289 (454)
T 4ao9_A 215 ERHG--PEIAVVLVEPMQGASGCIPGQPDFLQALRESATQVGALLVFDEVMTS-RLAPHGLANKLGIRSDLTTLG--KYI 289 (454)
T ss_dssp HHTG--GGEEEEEECSEESTTTCEECCHHHHHHHHHHHHHHTCEEEEECTTGG-GGSTTCHHHHHTCCCSEEEEE--GGG
T ss_pred hhcC--CceEEEEeccccCCCCccCCchhhHHHHHHHHhhcCCEEEEECCCcC-CCccccchhccCCCCcEEEec--ccc
Confidence 8532 45778899999999999988 88999999999999999999872 1111000 0000135888776 888
Q ss_pred CCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHH
Q 038499 301 GGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVI 380 (609)
Q Consensus 301 ggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i 380 (609)
||...+|.+++++++ .+.+.|.. +.+. ...-..|.|-..+...+.++. +-.+.+
T Consensus 290 ggG~Piga~~~~~ei--~~~~~~~~---~~~~----------------h~~T~~gnPla~AAala~L~~-----l~~~~~ 343 (454)
T 4ao9_A 290 GGGMSFGAFGGRADV--MALFDPRT---GPLA----------------HSGTFNNNVMTMAAGYAGLTK-----LFTPEA 343 (454)
T ss_dssp GTTSSCEEEEECHHH--HGGGCTTT---CSCC----------------CCCTTTTCHHHHHHHHHHHHH-----TSCHHH
T ss_pred CCCCcceeeeeHHHH--HHHHhhcc---CCcc----------------ccCCCCCCHHHHHHHHHHHHH-----HhccCh
Confidence 877778999999998 33333210 0000 000012333333322333332 223455
Q ss_pred HHHHHHHHHHHHHHhCCC----Cc-eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCC-CCCC---hHHHHHHHhh
Q 038499 381 KKQEETYIERALERLLPN----QN-IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETD-KPLH---GPFVATLLND 451 (609)
Q Consensus 381 ~~~~~~l~~~~~~~L~~~----p~-i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~-~~l~---~~~v~~~L~~ 451 (609)
.++..++.++++++|+++ +- .++.+ ...++.+.+...+.. +... ...+ ...+...|++
T Consensus 344 ~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg-----~G~m~gi~f~~~~~~--------~~~~~~~~d~~~~~~~~~~ll~ 410 (454)
T 4ao9_A 344 AGALAERGEALRARLNALCANEGVAMQFTG-----IGSLMNAHFVQGDVR--------SSEDLAAVDGRLRQLLFFHLLN 410 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTBSCEEEE-----ETTEEEEESCCSCCC--------SGGGGTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCEEEee-----eceEEEEEEecCCCC--------CHHHHHhhhHHHHHHHHHHHHH
Confidence 566666677777666542 21 12222 123344433220110 0000 0011 1234455555
Q ss_pred hcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccCC
Q 038499 452 LFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPL 531 (609)
Q Consensus 452 ~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~p~ 531 (609)
.||.+++ .+.+.+++. +|++|||+++++|++++.....++|.
T Consensus 411 -~Gv~~~p-----------------------------------~~~~~~s~~--~T~~dId~~l~al~~~l~~~~a~lPr 452 (454)
T 4ao9_A 411 -EDIYSSP-----------------------------------RGFVVLSLP--LTDADIDRYVAAIGSFIGGHGALLPR 452 (454)
T ss_dssp -TTEECCT-----------------------------------TCEEECCTT--CCHHHHHHHHHHHHHHHHHSGGGSCB
T ss_pred -CCEEEcC-----------------------------------CCCEEEeCC--CCHHHHHHHHHHHHHHHHhccccCCC
Confidence 4888762 144555554 69999999999999999998888875
|
| >4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-12 Score=141.19 Aligned_cols=373 Identities=16% Similarity=0.118 Sum_probs=207.4
Q ss_pred HHHHHHHHHhhccC-------------CCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCC
Q 038499 51 SEKKLTWLQSQIIG-------------KNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTC 111 (609)
Q Consensus 51 ~~~~~~~~r~~~~g-------------~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~ 111 (609)
..+.+++.++.+++ .+.++.+..|+ -|+|..++ |-..+.|.+++.+++.... |..
T Consensus 27 s~~l~~r~~~~~~~~~~~~~P~~i~~a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~---~~~ 100 (456)
T 4atq_A 27 SQALAERRSAVVAAGVASGVPVYVEDADGGIIRDVDGN---SFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFT---HTC 100 (456)
T ss_dssp HHHHHHHHHHHBCTTCCCSCSSCEEEEETTEEEETTSC---EEEESSHHHHTCTTCTTCHHHHHHHHHHHHHCS---CCT
T ss_pred HHHHHHHHHHhCCCCCCCCCCCeEEeeecCEEEeCCCC---EEEEccccHHHHhcCCCCHHHHHHHHHHHhhcc---Ccc
Confidence 45667777766642 33334444443 48997643 5567899999988876542 221
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCc
Q 038499 112 DSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEH 191 (609)
Q Consensus 112 ~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h 191 (609)
. .. ...+...++.+.|.+++..+..+.+.|+.|||++.-. .+++-- . -.+.+ .|+.-...|
T Consensus 101 ~--~~-~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~-AlklAr-------------~-~t~r~-~ii~~~~~y 161 (456)
T 4atq_A 101 F--MV-TPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVEN-AVKVAR-------------L-ATGRD-AVVAFDHAY 161 (456)
T ss_dssp T--TT-SCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHH-HHHHHH-------------H-HHCCC-EEEEETTCC
T ss_pred c--Cc-cCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHH-HHHHHh-------------h-hhcCC-eEEEEeccc
Confidence 1 11 1123344667788888876544478999888886333 322210 0 11222 466665566
Q ss_pred cchHH-HHHHc-------------CceEEEEecCC------CCCCCHHHHHHHHh---hhccCCCceEEEEecccCcccc
Q 038499 192 HSNLL-SWRQS-------------LAEVVEIGLDD------DGLLDIEALRSKLE---LYKDAKRPILGSFSACSNVTGI 248 (609)
Q Consensus 192 ~s~~~-~~~~~-------------G~~vv~v~~~~------~g~ld~e~L~~al~---~~~~~~~~~lv~~s~~sn~TG~ 248 (609)
|+... ..... ...+..+|... ....+.+.+++.+. .....+++..+++..+....|.
T Consensus 162 HG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~gG~ 241 (456)
T 4atq_A 162 HGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGEGGF 241 (456)
T ss_dssp CCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTTTTC
T ss_pred CCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCCCCc
Confidence 65432 22211 12455565432 11223444444332 1111245678889989888898
Q ss_pred ccC----HHHHHHHHHHhCCeEEEeccccC-Ccccc--cCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC
Q 038499 249 YSD----TRSIARLLHQYGGFACFDFAASG-PYVEI--DVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF 321 (609)
Q Consensus 249 ~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~i--d~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~ 321 (609)
+.| +++|.++|++||+++|+|+++.+ +-... -..... -..|+++++ |.+||...+|.+++++++ .+.+
T Consensus 242 ~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~g-v~PDivt~g--K~lggg~P~~av~~~~~i--~~~~ 316 (456)
T 4atq_A 242 IVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEG-VVPDIITMA--KGIAGGLPLSAITGRADL--LDAV 316 (456)
T ss_dssp BCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT-CCCSEEEEC--GGGGTTSSCEEEEEEHHH--HTTS
T ss_pred cccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccC-CCCchhhhh--hcccCcCCceeeEecHHH--Hhcc
Confidence 866 88999999999999999999875 22211 111110 135998887 888877678999999998 4555
Q ss_pred CCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----
Q 038499 322 PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP---- 397 (609)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~---- 397 (609)
.+...++. ..|.|--.+...+.++.+ +. +.+.++.+++.+++.+.|++
T Consensus 317 ~~~~~~~T-----------------------f~gnpla~aaala~L~~i--~~---~~l~~~~~~~g~~l~~~L~~l~~~ 368 (456)
T 4atq_A 317 HPGGLGGT-----------------------YGGNPVACAAALAAIDTM--EQ---HDLNGRARHIEELALGKLRELAAE 368 (456)
T ss_dssp CTTSSCCS-----------------------SSSCHHHHHHHHHHHHHH--HH---TTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCCC-----------------------CCCChHHHHhhHHHHHHH--hh---ccHHHHHHHHHHHHHHHHHHHHHh
Confidence 44332211 134444444444555544 22 23344555555555554433
Q ss_pred CCc--eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCC
Q 038499 398 NQN--IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD 475 (609)
Q Consensus 398 ~p~--i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~ 475 (609)
.+. ..+++.. ..+.-++.+.+.. +... ....--...+.+.+.+ .|+.+.. |. +
T Consensus 369 ~~~~~~~~v~~V-RG~Gl~~giel~~-~~~~---------~~~~~~~~~v~~~~~~-~Gvl~~~---~g-~--------- 423 (456)
T 4atq_A 369 LSAGGGSVVGDI-RGRGAMLAIELVQ-PGSK---------EPNAELTKAVAAACLK-EGVIILT---CG-T--------- 423 (456)
T ss_dssp CC-----CEEEE-EEETTEEEEEEBC-TTSC---------CBCHHHHHHHHHHHHH-TTEECEE---EC-T---------
T ss_pred cccccCCceEEe-eecceEEEEEEec-CCCC---------CcCHHHHHHHHHHHHH-CCCEEEe---cC-C---------
Confidence 211 1111110 0012334444433 1100 0000013456777766 4998763 11 1
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..+.|||..++..|++|+++++++|+++++.
T Consensus 424 ------------------~~~~irl~PpL~it~~~id~~l~~l~~al~a 454 (456)
T 4atq_A 424 ------------------YGNVIRLLPPLVISDELLIDGLEVLAAAIKA 454 (456)
T ss_dssp ------------------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 1368999999999999999999999998763
|
| >2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=1e-16 Score=173.52 Aligned_cols=343 Identities=14% Similarity=0.042 Sum_probs=191.3
Q ss_pred EEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHH
Q 038499 79 TYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaa 152 (609)
-|+|+.++ |-.++.|.+++.+++... .+. ........++.+.|+++++ ..+ .++|+++|+.+
T Consensus 101 ~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~---~~~------~~~~~~~~~Lae~L~~~~p-~~~-~v~~~nSGseA- 168 (465)
T 2yky_A 101 AYVNFLGEYTAGLFGHSHPVIRAAVERALAVG---LNL------STQTENEALFAEAVCDRFP-SID-LVRFTNSGTEA- 168 (465)
Confidence 37887653 334678888888776541 111 1234567788899999985 333 78888677775
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH----HcCc--eEEEEecCCCCCCCHHHHHHHHh
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR----QSLA--EVVEIGLDDDGLLDIEALRSKLE 226 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~----~~G~--~vv~v~~~~~g~ld~e~L~~al~ 226 (609)
+..++++.. ....++ .|++....||+...... ..|+ .++.++. -|+++|+++++
T Consensus 169 ~~~Aik~ar-------------~~tgr~--~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~-----~d~~~l~~~l~ 228 (465)
T 2yky_A 169 NLMALATAT-------------AITGRK--TVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVY-----NDVEGTADLLK 228 (465)
Confidence 444444321 012223 46666666665433222 1233 3333433 27899999987
Q ss_pred hhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCC--CccEEEEcCCCCC
Q 038499 227 LYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTD--GYDAIFLSTHKFL 300 (609)
Q Consensus 227 ~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~--~~D~v~~S~hK~l 300 (609)
+. .+++++|+++.++++||.+.| +++|.++|++||+++|+|++++ .... .+...... ..|++ +++|++
T Consensus 229 ~~--~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g-~~~a~~~~gv~pDi~--t~sK~l 302 (465)
T 2yky_A 229 RH--GHDCAAILVEPMLGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLS-GGGAQEMLGISADLT--TLGKYI 302 (465)
Confidence 42 146888888877777998877 8999999999999999999998 4211 11111111 24655 567999
Q ss_pred CCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc-CCChhHHHHHHHHHHHHHHHhcCHHH
Q 038499 301 GGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES-GGTPQVIQMIRAALAFWVKEYIGHEV 379 (609)
Q Consensus 301 ggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~-~gtp~i~~~~~aal~~~~~~~~g~~~ 379 (609)
|+...+|++++++++ ++.+.+...|... .... .+.|.......+++..+ + .+.
T Consensus 303 g~G~piG~v~~~~~i--~~~l~~~~~g~~~-------------------~~~T~~~npla~aAa~aaL~~l--~---~~~ 356 (465)
T 2yky_A 303 GGGMSFGAFGGRRDL--MERFDPARDGAFA-------------------HAGTFNNNILTMSAGHAALTQI--Y---TRQ 356 (465)
Confidence 975558999999998 4555431001000 0000 12222222223334433 1 134
Q ss_pred HHHHHHHHHHHHHHHhCCCC-ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCC-CCCChHHHHHHHhhhcCcEe
Q 038499 380 IKKQEETYIERALERLLPNQ-NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETD-KPLHGPFVATLLNDLFGIQA 457 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~~p-~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~-~~l~~~~v~~~L~~~~GI~v 457 (609)
+.++.+++.++++++|.++. ...+.... .....++++.+...+..+ ...... .......+.+.|.+ .||.+
T Consensus 357 ~~~~~~~~~~~l~~~L~~~~~~~~~~~~v-~g~G~~~~i~~~~~~~~~-----~~~~~~~d~~~~~~~~~~ll~-~GV~v 429 (465)
T 2yky_A 357 AASDLSASGDRFRANLNRIAVENQAPLQF-TGLGSLGTIHFSRAPIRS-----AGDVRAADQQLKELFFFHMLR-KGIYL 429 (465)
Confidence 56677777777777776641 11121111 123344444332200000 000000 00113456666765 58888
Q ss_pred ccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhccccc
Q 038499 458 RGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFL 529 (609)
Q Consensus 458 ~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~ 529 (609)
.++.. + . +++.+|++|+++++++|+++++....++
T Consensus 430 ~p~~~---------------------------------~-~---~s~~~t~edid~~l~~l~~~l~~~~~~~ 464 (465)
T 2yky_A 430 APRGM---------------------------------Y-A---LSLEIADAGRDAFAEALADFIGEQRALL 464 (465)
Confidence 74310 1 1 4455799999999999999887765544
|
| >4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A | Back alignment and structure |
|---|
Probab=99.48 E-value=9e-11 Score=127.16 Aligned_cols=359 Identities=15% Similarity=0.102 Sum_probs=201.3
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+..|++ |+|..++ |-..+.|.+++.+++.... ..++. .+. ..+...++.++|.+..+.+
T Consensus 56 g~G~~l~D~dG~~---ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~l~-~~~~~---~~~-~~~~~~~lAe~L~~~~p~~ 127 (473)
T 4e3q_A 56 GEGPYIVDVNGRR---YLDANSGLWNMVAGFDHKGLIDAAKAQYERFP-GYHAF---FGR-MSDQTVMLSEKLVEVSPFD 127 (473)
T ss_dssp EETTEEEETTCCE---EEETTTTTTTCTTCSCCHHHHHHHHHHHHHCC-CCCCC---TTE-EEHHHHHHHHHHHHHSSCS
T ss_pred eecCEEEeCCCCE---EEEcccCHHHhhccCCCHHHHHHHHHHHHhcc-ccccc---ccc-cCHHHHHHHHHHHhhCCCC
Confidence 6777888888764 9998765 4567889999988886542 11111 111 1233456777888888766
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHcC-----------ceE
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQSL-----------AEV 205 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G-----------~~v 205 (609)
-+ .|.|+.|||++. ...+++.- .. + ...-+++.+ .|+.-...||.. ..++...| ..+
T Consensus 128 ~~-~v~f~~sGsEA~-e~AiKlAr-~~---~----~~~g~~~r~-~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~ 196 (473)
T 4e3q_A 128 SG-RVFYTNSGSEAN-DTMVKMLW-FL---H----AAEGKPQKR-KILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGF 196 (473)
T ss_dssp SC-EEEEESSHHHHH-HHHHHHHH-HH---H----HHTTCTTCC-EEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTE
T ss_pred cc-EEEEeCchHHHH-HHHHHHHH-HH---H----HhcCCCCcc-eEEEeeceECCCccccccccccccccccCCCCCcc
Confidence 55 899998888863 32222210 00 0 000134433 566655555553 33332211 123
Q ss_pred EEEecC------CCCCC-------CHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEE
Q 038499 206 VEIGLD------DDGLL-------DIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACF 268 (609)
Q Consensus 206 v~v~~~------~~g~l-------d~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~viv 268 (609)
..++.. ..+.. ..+++++.+.+. ..+++..+++..+....|.+.| +++|.++|++||+++|+
T Consensus 197 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~ 275 (473)
T 4e3q_A 197 VHLTCPHYWRYGEEGETEEQFVARLARELEETIQRE-GADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVIS 275 (473)
T ss_dssp EEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHH-CGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEE
T ss_pred cccCCCcccccccccchhhHHHHHHHHHHHHHHHhh-CCCceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEec
Confidence 334322 11111 124555555431 1235668888989988898866 78999999999999999
Q ss_pred eccccCCcccccCCCCC--CCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCC-------CCccCCCceEeecccc
Q 038499 269 DFAASGPYVEIDVRSGQ--TDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFP-------PSTCGGGTVNYVNGFN 338 (609)
Q Consensus 269 D~A~~~~~~~id~~~~~--~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~-------p~~~ggg~v~~~~~~~ 338 (609)
|+++.+...--.+-... .-..|+++++ |.++|. ..+|.+++++++.. .+. +...|+
T Consensus 276 DEV~tGfGRtG~~fa~e~~gv~PDi~t~~--K~l~gG~~Pl~av~~~~~i~~--~~~~~~~~~~~~~hg~---------- 341 (473)
T 4e3q_A 276 DEVICGFGRTGNTWGCVTYDFTPDAIISS--KNLTAGFFPMGAVILGPELSK--RLETAIEAIEEFPHGF---------- 341 (473)
T ss_dssp ECTTTSSSTTSSSCHHHHTTCCCSEEEEC--GGGGTTSSCCEEEEECHHHHH--HHHHHHHHHSCCCCCC----------
T ss_pred cCccccCCcccchhHHHhcCCCCChHHhc--ccccCCCCCcccccccHHHHH--HhccccccccccccCC----------
Confidence 99977532111110000 0135988876 988765 45899999998832 221 111111
Q ss_pred cccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh---CCCCceE-EeCCCCCCCcce
Q 038499 339 EKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL---LPNQNIK-ILGNTSTKRQAI 414 (609)
Q Consensus 339 ~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L---~~~p~i~-v~~~~~~~r~~~ 414 (609)
...|.|--.+...+.++.. +.. .+.++.+++.+++.++| .+.|.+. +-+ +.-+
T Consensus 342 -------------T~~Gnpla~Aaala~L~~i--~~~---~l~~~~~~~g~~l~~~L~~l~~~~~v~~vRG-----~Gl~ 398 (473)
T 4e3q_A 342 -------------TASGHPVGCAIALKAIDVV--MNE---GLAENVRRLAPRFEERLKHIAERPNIGEYRG-----IGFM 398 (473)
T ss_dssp -------------TTTTCHHHHHHHHHHHHHH--HHS---SHHHHHHHHHHHHHHHHHHHTTSTTEEEEEE-----ETTE
T ss_pred -------------CCCCCcchhhhhhhhhhhh--ccc---cHHHHHHHHHHHHHHHHHHHhcCCCeeEEee-----cceE
Confidence 0123343333334444443 222 33444445555555544 4445542 221 1233
Q ss_pred EEEEeccCCCCCcCCCCCCCCCCCCC-----ChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhC
Q 038499 415 LSFNIHSSTINSSLGENTKTETDKPL-----HGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKG 489 (609)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~~~l-----~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~ 489 (609)
+.+.+.. +.. ..... -...+.+.+.+ .|+.+++ .
T Consensus 399 ~gielv~-~~~----------~~~~~~~~~~~~~~~~~~~~~-~Gll~~~-------~---------------------- 437 (473)
T 4e3q_A 399 WALEAVK-DKA----------SKTPFDGNLSVSERIANTCTD-LGLICRP-------L---------------------- 437 (473)
T ss_dssp EEEEECS-BTT----------TTBCCCGGGCHHHHHHHHHHH-TTEECEE-------E----------------------
T ss_pred EEEEEec-Ccc----------ccccccccHHHHHHHHHHHHH-CCcEEEe-------c----------------------
Confidence 4444332 110 11111 13467777766 4998772 1
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 490 ~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
...+|+..++.+|++|+|.++++|++++++.
T Consensus 438 -----g~~i~l~PPL~it~~eid~~~~~l~~al~~v 468 (473)
T 4e3q_A 438 -----GQSVVLCPPFILTEAQMDEMFDKLEKALDKV 468 (473)
T ss_dssp -----TTEEEECCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred -----CCEEEEeCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 2579999999999999999999998887653
|
| >4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.4e-11 Score=142.19 Aligned_cols=353 Identities=14% Similarity=0.079 Sum_probs=187.9
Q ss_pred EEecCCCC------CCC-hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHH
Q 038499 79 TYADHTAS------GRS-LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTA 151 (609)
Q Consensus 79 vyld~~a~------g~~-~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGtta 151 (609)
-|+|..++ |-. .+.|.+++.+++..+ . |.. ..+. +.+...++.++|+++++.+.-+.|+|+.||+++
T Consensus 381 ~ylD~~sg~~~~~lGh~~~p~i~~Ai~~Q~~~l-~--h~~--~~~~-~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA 454 (831)
T 4a0g_A 381 QQFDACASWWTQGPDPTFQAELAREMGYTAARF-G--HVM--FPEN-VYEPALKCAELLLDGVGKGWASRVYFSDNGSTA 454 (831)
T ss_dssp EEEETTHHHHTCCCCHHHHHHHHHHHHHHHHHH-S--SCC--CTTE-ECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHH
T ss_pred heeeecccHhhcCCCCCCCHHHHHHHHHHHhhc-c--ccc--cccc-CCHHHHHHHHHHHHhCCCCCCCEEEECCChhHH
Confidence 48887653 445 778999998887653 2 211 0111 234455788888888875422389999999987
Q ss_pred ---HHHHHHHHhcccchhhHHHHHHhhhcCC----------CceEEEECCCCcc-chHHHHHHcCce-------------
Q 038499 152 ---AIKRLQEVMGIAVPSILREKLIKCLRDE----------ERWVVFVGPHEHH-SNLLSWRQSLAE------------- 204 (609)
Q Consensus 152 ---al~~l~~~l~~~~~~~~~~~~~~~l~~g----------d~~~Vlv~~~~h~-s~~~~~~~~G~~------------- 204 (609)
||+++.+... -+.| ++..||.-...|| ....++...|..
T Consensus 455 ~E~AlK~A~r~~~--------------~~~g~~~~~~~~~~~r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~ 520 (831)
T 4a0g_A 455 IEIALKMAFRKFC--------------VDHNFCEATEEEKHIVVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTG 520 (831)
T ss_dssp HHHHHHHHHHHHH--------------HTTTC---------CCEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCC
T ss_pred HHHHHHHHHHHHH--------------hhcCCCccccccccCccEEEEecCCcccCceeeeeccCccccccccccccccC
Confidence 3333322111 0111 2335665555555 444444433310
Q ss_pred ---------------EEEEecCCC--C-------CCC------------------HHHHHHHHhhh---ccCCCceEEEE
Q 038499 205 ---------------VVEIGLDDD--G-------LLD------------------IEALRSKLELY---KDAKRPILGSF 239 (609)
Q Consensus 205 ---------------vv~v~~~~~--g-------~ld------------------~e~L~~al~~~---~~~~~~~lv~~ 239 (609)
+..++.... + .-+ +++|++.|.+. ...+++.++++
T Consensus 521 ~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~ 600 (831)
T 4a0g_A 521 RGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALII 600 (831)
T ss_dssp CEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHHCGGGGGSHHHHHHHHHHHHHC---------CEEEEEEE
T ss_pred CccccCCccccccCCceEecCCccccccccccccccchhhhhcccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEE
Confidence 011222110 0 001 25677777531 11245678888
Q ss_pred ecc-cCccccccC----HHHHHHHHHHhCCeEEEeccccC-CcccccC--CCCCCCCccEEEEcCCCCCCCC-CCcEEEE
Q 038499 240 SAC-SNVTGIYSD----TRSIARLLHQYGGFACFDFAASG-PYVEIDV--RSGQTDGYDAIFLSTHKFLGGP-GSPGILL 310 (609)
Q Consensus 240 s~~-sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~-~~~~id~--~~~~~~~~D~v~~S~hK~lggp-~g~G~L~ 310 (609)
..+ ++..|.+.+ +++|.++|++||+++|+|+++.+ |...--+ ...+ -..|+++++ |.++|. ..+|+++
T Consensus 601 Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~g-v~PDiitls--K~L~gG~~Plgav~ 677 (831)
T 4a0g_A 601 EPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLG-CKPDIACFA--KLLTGGMVPLAVTL 677 (831)
T ss_dssp CCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTTTTSBSSTHHHHS-SCCSEEEEC--GGGGTTSSCCEEEE
T ss_pred ecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccccCCCchhhHhcC-CCCcEEEEe--cccccCccCcEEEE
Confidence 886 888899876 89999999999999999998763 2221111 0000 135887654 999874 3579999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHH--
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIG-HEVIKKQEETY-- 387 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g-~~~i~~~~~~l-- 387 (609)
++++++ +.+.+.... .. +. ......|.|-..+...++++.+. ..+ .+.+.+....+
T Consensus 678 ~~~~i~--~~~~~~~~~-~~-------------~~---hg~T~~g~Pla~Aaala~L~~i~--~~~l~~~~~~~~~~l~~ 736 (831)
T 4a0g_A 678 ATDAVF--DSFSGDSKL-KA-------------LL---HGHSYSAHAMGCATAAKAIQWFK--DPETNHNITSQGKTLRE 736 (831)
T ss_dssp ECHHHH--HTTCSSCGG-GS-------------CC---CCCTTTTCHHHHHHHHHHHHHHH--CTTTCTTBCTTSSBBCC
T ss_pred ECHHHH--HHHhccccc-cc-------------ce---eecCCcccHHHHHHHHHHHHHHH--hhHHHHHHHHHHHHHHH
Confidence 999983 333221000 00 00 00011334444444455555442 111 11111111111
Q ss_pred --HHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCC--CCChHHHHHHHhhhcCcEeccCccc
Q 038499 388 --IERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDK--PLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 388 --~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~--~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
.+.+.+.+.+.|.+.-+.. ...++.+.+.. +.. ... ......+.+.|.+ .||.++++
T Consensus 737 ~l~~~l~~~l~~~~~v~~vrg----~Gl~~~iel~~-~~~----------~~~~~~~~a~~~~~~l~e-~Gv~v~p~--- 797 (831)
T 4a0g_A 737 LWDEELVQQISSHSAVQRVVV----IGTLFALELKA-DAS----------NSGYASLYAKSLLIMLRE-DGIFTRPL--- 797 (831)
T ss_dssp CSCHHHHHHHHHSTTEEEEEE----ETTEEEEEEC--------------------CHHHHHHHHHHHH-TTEECCCB---
T ss_pred HHHHHHHHHHhhCCCceeEee----cccEEEEEEec-Ccc----------ccccchHHHHHHHHHHHH-CCcEEEec---
Confidence 1223344444555533211 22344444433 100 000 0124567777866 59998832
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.+.+|+++++.+|++|+++++++|+++++..
T Consensus 798 -------------------------------g~~lrl~pp~~~t~e~id~~~~~l~~~l~~l 828 (831)
T 4a0g_A 798 -------------------------------GNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828 (831)
T ss_dssp -------------------------------TTEEEEECCTTCCHHHHHHHHHHHHHHHTTT
T ss_pred -------------------------------CCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 2689999999999999999999999987654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 609 | ||||
| d1jf9a_ | 405 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 5e-38 | |
| d1t3ia_ | 408 | c.67.1.3 (A:) Probable cysteine desulfurase SufS { | 9e-31 | |
| d1p3wa_ | 391 | c.67.1.3 (A:) Cysteine desulfurase IscS {Escherich | 7e-29 | |
| d1eg5a_ | 376 | c.67.1.3 (A:) NifS-like protein/selenocysteine lya | 7e-17 | |
| d3bc8a1 | 445 | c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase | 2e-09 | |
| d1js3a_ | 476 | c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) | 1e-08 | |
| d1qz9a_ | 404 | c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescen | 3e-07 | |
| d1c4ka2 | 462 | c.67.1.5 (A:108-569) Ornithine decarboxylase major | 9e-07 | |
| d1h0ca_ | 388 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 7e-06 | |
| d1vjoa_ | 377 | c.67.1.3 (A:) Alanine-glyoxylate aminotransferase | 8e-05 | |
| d2ch1a1 | 388 | c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminas | 7e-04 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} Length = 405 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Score = 143 bits (361), Expect = 5e-38
Identities = 85/458 (18%), Positives = 142/458 (31%), Gaps = 74/458 (16%)
Query: 69 FDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128
L Y D AS + + + Y H + T +
Sbjct: 14 LSREVNGLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRK 73
Query: 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP 188
+ + ++F T + +
Sbjct: 74 RASLFINARSAEELVFVRGTTEGINLVA--------------NSWGNSNVRAGDNIIISQ 119
Query: 189 HEHHSNLLSWRQSL----AEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244
EHH+N++ W+ AE+ I L+ DG L +E L + + ++ L + + SN
Sbjct: 120 MEHHANIVPWQMLCARVGAELRVIPLNPDGTLQLETLPTLFD-----EKTRLLAITHVSN 174
Query: 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG 304
V G + + L HQ+G D A + + +DV Q D S HK G G
Sbjct: 175 VLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDV---QALDCDFYVFSGHKLYGPTG 231
Query: 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR 364
+ + L + PP GG + V + + R GTP +I
Sbjct: 232 IGILYVKEALLQE---MPPWEGGGSMIATV---SLSEGTTWTKAPWRFEAGTPNTGGIIG 285
Query: 365 AALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424
A +G I + E+ + AL +L ++ + G R +++FN+
Sbjct: 286 LGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYG--PQNRLGVIAFNL----- 338
Query: 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRS 484
H V + L D +GI R G CA P +
Sbjct: 339 -------------GKHHAYDVGSFL-DNYGIAVRTGHHCAMPLMAYY------------- 371
Query: 485 AIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522
P R S Y ++EE + + L+ I
Sbjct: 372 --------NVPAMCRASLAMYNTHEEVDRLVTGLQRIH 401
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 408 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Score = 122 bits (306), Expect = 9e-31
Identities = 90/455 (19%), Positives = 143/455 (31%), Gaps = 71/455 (15%)
Query: 69 FDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASN 128
+ L Y D+ A+ + R + +++ N H + T+ N
Sbjct: 14 LNQEINGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRN 73
Query: 129 YIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGP 188
+ K + +++ + T A L + +
Sbjct: 74 KVAKFINARSPREIVYTRNATEAI--------------NLVAYSWGMNNLKAGDEIITTV 119
Query: 189 HEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD--AKRPILGSFSACSNVT 246
EHHSNL+ W+ + G + E LE +K +++ L + SN
Sbjct: 120 MEHHSNLVPWQM---VAAKTGAVLKFVQLDEQESFDLEHFKTLLSEKTKLVTVVHISNTL 176
Query: 247 GIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSP 306
G + IA+L HQ G D S P+ +DV Q D + S HK G
Sbjct: 177 GCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDV---QLIDCDWLVASGHKMCAPTGIG 233
Query: 307 GILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAA 366
+ + L PP GG + D ++ + GTP + + I
Sbjct: 234 FLYGKEEILEA---MPPFFGGGE----MIAEVFFDHFTTGELPHKFEAGTPAIAEAIALG 286
Query: 367 LAFWVKEYIGHEVIKKQEETYIERA--LERLLPNQNIKILGNTSTKRQAILSFNIHSSTI 424
A +G E I E +P + R A+ SFN+
Sbjct: 287 AAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNV----- 341
Query: 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRS 484
LH VAT++ D GI R G C P H L D
Sbjct: 342 -------------AGLHASDVATMV-DQDGIAIRSGHHCTQPL-HRLFDA---------- 376
Query: 485 AIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519
G R S +Y + EE + L++L+
Sbjct: 377 ----------SGSARASLYFYNTKEEIDLFLQSLQ 401
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} Length = 391 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Score = 116 bits (291), Expect = 7e-29
Identities = 73/462 (15%), Positives = 138/462 (29%), Gaps = 89/462 (19%)
Query: 80 YADHTASG----RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG 135
Y D++A+ R + ++ + +GN + G V A N I +G
Sbjct: 5 YLDYSATTPVDPRVAEKMMQFMTMD--GTFGNPASRSHRFGWQAEEAVDIARNQIADLVG 62
Query: 136 GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195
+ I SG T + + ++ + EH + L
Sbjct: 63 ADPRE--IVFTSGATESDNLAIKGA-------------ANFYQKKGKHIITSKTEHKAVL 107
Query: 196 LSWRQ---SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT 252
+ RQ EV + +G++D++ L + + IL S +N G+ D
Sbjct: 108 DTCRQLEREGFEVTYLAPQRNGIIDLKELEAAM-----RDDTILVSIMHVNNEIGVVQDI 162
Query: 253 RSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312
+I + G D S + ID+ D + S HK G G + +
Sbjct: 163 AAIGEMCRARGIIYHVDATQSVGKLPIDL---SQLKVDLMSFSGHKIYGPKGIGALYVRR 219
Query: 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK 372
K + GG E GT V Q++ A+ +
Sbjct: 220 KPRVR---IEAQMHGG------------------GHERGMRSGTLPVHQIVGMGEAYRIA 258
Query: 373 EYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENT 432
+ ++ R + + + + G+ IL+ +
Sbjct: 259 KEEMAT-EMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSF------------- 304
Query: 433 KTETDKPLHGPFVATLLNDLFGIQARGGCACAGP--YGHHLLDLDEAQSYQIRSAIQKGY 490
+ +L+ L + G AC ++L S+I
Sbjct: 305 --------NYVEGESLIMALKDLAVSSGSACTSASLEPSYVLRALGLNDELAHSSI---- 352
Query: 491 VGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLY 532
R S + + EE ++T+E + + PL+
Sbjct: 353 --------RFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLW 386
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} Length = 376 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Score = 80.5 bits (197), Expect = 7e-17
Identities = 79/444 (17%), Positives = 130/444 (29%), Gaps = 77/444 (17%)
Query: 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE 139
Y D+ A+ R + +I YGN ++ G + +A + K LG
Sbjct: 4 YFDNNATTRVDDRVLEEMIVFYREKYGNPNSAHGM-GIEANLHMEKAREKVAKVLGVSPS 62
Query: 140 DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR 199
+ IF S T +I + + + R + +
Sbjct: 63 E--IFFTSCATESINWILKTVAET----------FEKRKRTIITTPIEHKAVLETMKYLS 110
Query: 200 QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLL 259
+V + +D G++ +E L ++ + L S A +N G + R++
Sbjct: 111 MKGFKVKYVPVDSRGVVKLEELEKLVD-----EDTFLVSIMAANNEVGTIQPVEDVTRIV 165
Query: 260 HQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLG 319
+ A +I + D S HKF G G +
Sbjct: 166 KKKNKETLVHVDAVQTIGKIPFSL-EKLEVDYASFSAHKFHGPKGVGITYIRKG-----V 219
Query: 320 SFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEV 379
P GGG + GT V ++ AA A + E
Sbjct: 220 PIRPLIHGGGQERGLRS------------------GTQNVPGIVGAARAMEIAVEELSEA 261
Query: 380 IKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP 439
K E+ + + +I S +SF
Sbjct: 262 AKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSF--------------------PN 301
Query: 440 LHGPFVATLLNDLFGIQARGGCACAGP--YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497
+ G + LL +GI AC H+LD A R A G
Sbjct: 302 IRGSTLQNLL-SGYGIYVSTSSACTSKDERLRHVLD---AMGVDRRIA---------QGA 348
Query: 498 TRISFPYYMSNEEFEFTLEALEFI 521
RIS Y + EE ++ L+ +E I
Sbjct: 349 IRISLCKYNTEEEVDYFLKKIEEI 372
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} Length = 445 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Score = 58.0 bits (139), Expect = 2e-09
Identities = 45/411 (10%), Positives = 99/411 (24%), Gaps = 75/411 (18%)
Query: 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDE 179
+ + + K G + T ++ LR K K
Sbjct: 93 NKITNSLVLNVIKLAGVHSVASCFVVPMATGMSL--------TLCFLTLRHKRPK----- 139
Query: 180 ERWVVFVGPHEHHSNLLSWRQSLAEVVEI---GLDDDGLLDIEALRSKLELYKDAKRPIL 236
+ + S S + E V I D+ D++A+ +K++ L
Sbjct: 140 -AKYIIWPRIDQKSCFKSMVTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGPEHILCL 198
Query: 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA---ASGPYVEIDVRSGQTDGYDAIF 293
+ + +A + Y + A S + + + + DA
Sbjct: 199 -HSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQGARVGRIDAFV 257
Query: 294 LSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353
S K P I+ + ++ +L
Sbjct: 258 QSLDKNFMVPVGGAIIAGFNEPFIQDISKMYPGRASASPSLDVLITLLSLGCSG------ 311
Query: 354 GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA 413
+ E+ Y+ L++L N ++L
Sbjct: 312 ---------------YRKLLKERKEMFV-----YLSTQLKKLAEAHNERLLQTPHNPISL 351
Query: 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLN--DLFGIQARGGCACAGPYGHHL 471
++ + ++ + + + G L N + G RG + A Y
Sbjct: 352 AMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHTFRGFMSHADNYPCAY 411
Query: 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522
L + M ++ + ++ L+
Sbjct: 412 L--------------------------NAAAAIGMKMQDVDLFIKRLDKCL 436
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Score = 55.2 bits (132), Expect = 1e-08
Identities = 33/289 (11%), Positives = 86/289 (29%), Gaps = 33/289 (11%)
Query: 117 QHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCL 176
+ + + + L G + + A ++ + R K+++ L
Sbjct: 116 TVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEAT-----LVALLAA---RTKVVRRL 167
Query: 177 RDEE----------RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLE 226
+ + V + H S + ++ I D + AL+ LE
Sbjct: 168 QAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRASALQEALE 227
Query: 227 LYKDA-KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQ 285
K A P + + + + + + H+ + D A +G
Sbjct: 228 RDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDAAYAGSAFICPEFRHL 287
Query: 286 TDGY---DAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDT 342
+G D+ + HK+L + + + G+F ++ K +
Sbjct: 288 LNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAF-----------KLDPVYLKHS 336
Query: 343 LYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERA 391
+ + + R+ ++V G + ++ +++ +
Sbjct: 337 HQGSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLS 385
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} Length = 404 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Score = 50.9 bits (120), Expect = 3e-07
Identities = 48/358 (13%), Positives = 100/358 (27%), Gaps = 24/358 (6%)
Query: 76 RRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG 135
+ Y D + G + +GN S+ ++ N + +G
Sbjct: 26 EGVIYLDGNSLGARPVAALARAQAVIAEEWGNGLI-RSWNSAGWRDLSERLGNRLATLIG 84
Query: 136 GGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195
+ ++ + + K L L V V +
Sbjct: 85 ARDGE-VVVTDTTSINLFKVL------------SAALRVQATRSPERRVIVTETSNFPTD 131
Query: 196 LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSI 255
L + LA++++ G + E L ++ + + + + TG D +++
Sbjct: 132 LYIAEGLADMLQQGYTLRLVDSPEELPQAID-----QDTAVVMLTHVNYKTGYMHDMQAL 186
Query: 256 ARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315
L H+ G A +D A S V +D+ D AI + GGPGS +
Sbjct: 187 TALSHECGALAIWDLAHSAGAVPVDLHQAGAD--YAIGCTYKYLNGGPGSQA-FVWVSPQ 243
Query: 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYI 375
P + G + + + + F +
Sbjct: 244 LCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMA 303
Query: 376 GHEVIKKQEETYIERALERLLPNQNIKILG-NTSTKRQAILSFNI-HSSTINSSLGEN 431
+E+ + ++ KR + +SF + +L +
Sbjct: 304 SLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAVIQALIDR 361
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} Length = 462 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Score = 49.3 bits (116), Expect = 9e-07
Identities = 56/489 (11%), Positives = 103/489 (21%), Gaps = 77/489 (15%)
Query: 65 KNAEFDSPFGKRRLTYADHTASGRSLRYI-ENYI---INNVLPFYGNTHTCDSYVGQHTT 120
+FD P + Y H A + E + N G+
Sbjct: 14 YLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLL--------IHE 65
Query: 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE 180
A + + D F G++ A +++ D
Sbjct: 66 GPAVAAEKHAARVYNA---DKTYFVLGGSSNANN-------TVTSALVSNG------DL- 108
Query: 181 RWVVFVGPHEHHSNLLSWRQSLAEVVE-----------IGLDDDGLLDIEALRSKLELYK 229
V + H S S IG D D + +R
Sbjct: 109 ---VLFDRNNHKSVYNSALAMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVD 165
Query: 230 ----DAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDV---- 281
KRP + G + + + + + FD A G I +
Sbjct: 166 PERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNS 225
Query: 282 ------RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVN 335
G D + S HK G + K + G
Sbjct: 226 SPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFN----- 279
Query: 336 GFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEE--TYIERALE 393
S + A + G ++ + L
Sbjct: 280 ----------NSFNLFMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLI 329
Query: 394 RLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLF 453
+ + + K+ ++ I+ E +G + + F
Sbjct: 330 KAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDPNKF 389
Query: 454 GIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEF 513
+ G G Y + +Y I + +
Sbjct: 390 MLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSD--LNSILFLMTPAETPAKMNN 447
Query: 514 TLEALEFIA 522
+ L +
Sbjct: 448 LITQLLQLQ 456
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.3 bits (108), Expect = 7e-06
Identities = 46/400 (11%), Positives = 95/400 (23%), Gaps = 74/400 (18%)
Query: 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEE 180
++ E I+ ++ GSG A + A+ ++L +
Sbjct: 52 QIMDEIKEGIQYVFQTRNPLTLVISGSGHCA--------LEAALVNVLEPGDSFLVGANG 103
Query: 181 RWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFS 240
W + ++E +P+L +
Sbjct: 104 IWGQRAVDIGERIGARVHPMTKDP------------GGHYTLQEVEEGLAQHKPVLLFLT 151
Query: 241 ACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFL 300
+ TG+ L H+Y D AS + + G D ++ + K L
Sbjct: 152 HGESSTGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYM---DRQGIDILYSGSQKAL 208
Query: 301 GGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVI 360
P ++ + + S Y++ + +D P +
Sbjct: 209 NAPPGTSLISFSDKAKK---KMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIPVIS 265
Query: 361 QMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIH 420
+ E G E +Q RL + + + + + + +
Sbjct: 266 LYSLRESLALIAEQ-GLENSWRQHREAAAYLHGRLQALGLQLFVKDPALRLPTVTTVAVP 324
Query: 421 SSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSY 480
+ + + D F I+ GG +
Sbjct: 325 -----------------AGYDWRDIVSYVIDHFDIEIMGGLGPS---------------- 351
Query: 481 QIRSAIQKGYVGVKPGWTRIS-FPYYMSNEEFEFTLEALE 519
RI + E + EAL
Sbjct: 352 -------------TGKVLRIGLLGCNATRENVDRVTEALR 378
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Length = 377 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Score = 42.8 bits (99), Expect = 8e-05
Identities = 47/407 (11%), Positives = 93/407 (22%), Gaps = 78/407 (19%)
Query: 116 GQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKC 175
++ E + ++ + G+GT A M + + + +
Sbjct: 46 DPAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAA--------MEATIANAVEPGDVVL 97
Query: 176 LRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235
+ + + G AL + RP
Sbjct: 98 IGVAGYFGNRLVDMAGRYGADVRTI----SKPWGEVFSLEELRTALET--------HRPA 145
Query: 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLS 295
+ + TG + L ++G D + G D +
Sbjct: 146 ILALVHAETSTGARQPLEGVGELCREFGTLLLVDTV---TSLGGVPIFLDAWGVDLAYSC 202
Query: 296 THKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGG 355
+ K LG PG T + + K ER
Sbjct: 203 SQKGLGCS--PGASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGK-----YWGSERVYHH 255
Query: 356 TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAIL 415
T + A + G ++ + +E ER L + + + + +
Sbjct: 256 TAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWER-LEDIGLSLHVEKEYRLPTLT 314
Query: 416 SFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD 475
+ I + G VA L + I+ GG
Sbjct: 315 TVCI-----------------PDGVDGKAVARRLLNEHNIEVGGGLGE------------ 345
Query: 476 EAQSYQIRSAIQKGYVGVKPGWTRIS-FPYYMSNEEFEFTLEALEFI 521
+ R+ + E + + ALE +
Sbjct: 346 -----------------LAGKVWRVGLMGFNSRKESVDQLIPALEQV 375
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} Length = 388 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Score = 39.7 bits (91), Expect = 7e-04
Identities = 43/414 (10%), Positives = 91/414 (21%), Gaps = 77/414 (18%)
Query: 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEER 181
+ E + ++ M GS M + ++L E +
Sbjct: 51 TMDEVKDGLRYIFQTENRATMCVSGSAHAG--------MEAMLSNLLEEGDRVLIAVNGI 102
Query: 182 WVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSA 241
W L + +P +
Sbjct: 103 WAERAVEMSERYGADVRTIEGPPDRPFS------------LETLARAIELHQPKCLFLTH 150
Query: 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLG 301
+ +G+ + ++ HQ+ D AS V + DA++ K LG
Sbjct: 151 GDSSSGLLQPLEGVGQICHQHDCLLIVDAVASLCGVPFYM---DKWEIDAVYTGAQKVLG 207
Query: 302 GPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ 361
P + ++ + + + E + T
Sbjct: 208 APPGITPISISPKALD----VIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTVASNL 263
Query: 362 MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHS 421
+ A G E K+ + E L + + + + I
Sbjct: 264 IFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGIMI-- 321
Query: 422 STINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQ 481
K + V+ + F ++ +GG
Sbjct: 322 ---------------PKGVDWWKVSQYAMNNFSLEVQGGLGP------------------ 348
Query: 482 IRSAIQKGYVGVKPGWTRIS-FPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNF 534
R+ + ++ +F L + + P Y F
Sbjct: 349 -----------TFGKAWRVGIMGECSTVQKIQFYLYGFKESL---KATHPDYIF 388
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| d1jf9a_ | 405 | NifS-like protein/selenocysteine lyase {Escherichi | 100.0 | |
| d1t3ia_ | 408 | Probable cysteine desulfurase SufS {Synechocystis | 100.0 | |
| d1p3wa_ | 391 | Cysteine desulfurase IscS {Escherichia coli [TaxId | 100.0 | |
| d1elua_ | 381 | Cystine C-S lyase C-des {Synechocystis sp. [TaxId: | 100.0 | |
| d1eg5a_ | 376 | NifS-like protein/selenocysteine lyase {Thermotoga | 100.0 | |
| d1qz9a_ | 404 | Kynureninase {Pseudomonas fluorescens [TaxId: 294] | 100.0 | |
| d1h0ca_ | 388 | Alanine-glyoxylate aminotransferase {Human (Homo s | 100.0 | |
| d1vjoa_ | 377 | Alanine-glyoxylate aminotransferase {Cyanobacteria | 99.98 | |
| d1m32a_ | 361 | 2-aminoethylphosphonate transaminase {Salmonella t | 99.97 | |
| d2ch1a1 | 388 | 3-hydroxykynurenine transaminase {Malaria mosquito | 99.97 | |
| d2bkwa1 | 382 | Alanine-glyoxylate aminotransferase {Baker's yeast | 99.97 | |
| d1pmma_ | 450 | Glutamate decarboxylase beta, GadB {Escherichia co | 99.97 | |
| d1js3a_ | 476 | DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823] | 99.97 | |
| d2e7ja1 | 364 | Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl | 99.96 | |
| d1iuga_ | 348 | Subgroup IV putative aspartate aminotransferase {T | 99.94 | |
| d1j32a_ | 388 | Aspartate aminotransferase, AAT {Phormidium lapide | 99.93 | |
| d1v2da_ | 368 | Glutamine aminotransferase {Thermus thermophilus [ | 99.93 | |
| d1gdea_ | 388 | Aromatic aminoacid aminotransferase, AroAT {Archae | 99.93 | |
| d2c0ra1 | 361 | Phosphoserine aminotransferase, PSAT {Bacillus cir | 99.93 | |
| d1fg7a_ | 354 | Histidinol-phosphate aminotransferase HisC {Escher | 99.92 | |
| d1bjna_ | 360 | Phosphoserine aminotransferase, PSAT {Escherichia | 99.92 | |
| d3bc8a1 | 445 | Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu | 99.91 | |
| d2z67a1 | 434 | Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco | 99.91 | |
| d1w23a_ | 360 | Phosphoserine aminotransferase, PSAT {Bacillus alc | 99.91 | |
| d1bs0a_ | 383 | PLP-dependent acyl-CoA synthase (8-amino-7-oxonano | 99.91 | |
| d1b5pa_ | 382 | Aspartate aminotransferase, AAT {Thermus thermophi | 99.91 | |
| d1mdoa_ | 376 | Aminotransferase ArnB {Salmonella typhimurium [Tax | 99.91 | |
| d1bw0a_ | 412 | Tyrosine aminotransferase (TAT) {Trypanosoma cruzi | 99.91 | |
| d1lc5a_ | 355 | L-threonine-O-3-phosphate decarboxylase CobD {Salm | 99.91 | |
| d1xi9a_ | 395 | Putative alanine aminotransferase {Pyrococcus furi | 99.91 | |
| d1d2fa_ | 361 | Modulator in mal gene expression, MalY {Escherichi | 99.91 | |
| d1fc4a_ | 401 | 2-amino-3-ketobutyrate CoA ligase {Escherichia col | 99.9 | |
| d2r5ea1 | 418 | Kynurenine--oxoglutarate transaminase I {Yellowfev | 99.9 | |
| d2bwna1 | 396 | 5-aminolevulinate synthase {Rhodobacter capsulatus | 99.9 | |
| d1c7na_ | 394 | Cystalysin {Treponema denticola [TaxId: 158]} | 99.9 | |
| d2f8ja1 | 334 | Histidinol-phosphate aminotransferase HisC {Thermo | 99.89 | |
| d1o4sa_ | 375 | Aspartate aminotransferase, AAT {Thermotoga mariti | 99.89 | |
| d1c4ka2 | 462 | Ornithine decarboxylase major domain {Lactobacillu | 99.89 | |
| d1m7ya_ | 431 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.89 | |
| d1vp4a_ | 420 | Putative aminotransferase TM1131 {Thermotoga marit | 99.88 | |
| d1iaya_ | 428 | 1-aminocyclopropane-1-carboxylate synthase (ACC sy | 99.88 | |
| d1u08a_ | 382 | Putative methionine aminotransferase YdbL {Escheri | 99.88 | |
| d1w7la_ | 418 | Kynurenine--oxoglutarate transaminase I {Human (Ho | 99.88 | |
| d1wsta1 | 403 | Multiple substrate aminotransferase, MSAT {Thermoc | 99.88 | |
| d2gb3a1 | 389 | AAT homologue TM1698 {Thermotoga maritima [TaxId: | 99.86 | |
| d2fnua1 | 371 | Spore coat polysaccharide biosynthesis protein C { | 99.84 | |
| d1gc0a_ | 392 | Methionine gamma-lyase, MGL {Pseudomonas putida [T | 99.83 | |
| d1v72a1 | 345 | Phenylserine aldolase PSALD {Pseudomonas putida [T | 99.82 | |
| d1y4ia1 | 397 | Methionine gamma-lyase, MGL {Citrobacter freundii | 99.81 | |
| d1b9ha_ | 384 | 3-amino-5-hydroxybenzoic acid synthase (AHBA synth | 99.81 | |
| d2aeua1 | 366 | Hypothetical protein MJ0158 {Archaeon Methanococcu | 99.8 | |
| d1dfoa_ | 416 | Serine hydroxymethyltransferase {Escherichia coli | 99.79 | |
| d1kl1a_ | 405 | Serine hydroxymethyltransferase {Bacillus stearoth | 99.79 | |
| d1qgna_ | 398 | Cystathionine gamma-synthase, CGS {Common tobacco | 99.78 | |
| d1cs1a_ | 384 | Cystathionine gamma-synthase, CGS {Escherichia col | 99.77 | |
| d1ibja_ | 380 | Cystathionine beta-lyase, CBL {Thale cress (Arabid | 99.77 | |
| d1o69a_ | 374 | Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam | 99.75 | |
| d1svva_ | 340 | Low-specificity threonine aldolase {Leishmania maj | 99.75 | |
| d7aata_ | 401 | Aspartate aminotransferase, AAT {Chicken (Gallus g | 99.75 | |
| d2ctza1 | 421 | O-acetyl-L-homoserine sulfhydrylase {Thermus therm | 99.74 | |
| d1e5ea_ | 394 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.74 | |
| d1rv3a_ | 470 | Serine hydroxymethyltransferase {Rabbit (Oryctolag | 99.73 | |
| d2a7va1 | 463 | Serine hydroxymethyltransferase {Human (Homo sapie | 99.73 | |
| d1pffa_ | 331 | Methionine gamma-lyase, MGL {Trichomonas vaginalis | 99.72 | |
| d1cl1a_ | 391 | Cystathionine beta-lyase, CBL {Escherichia coli [T | 99.71 | |
| d1m6sa_ | 343 | Low-specificity threonine aldolase {Thermotoga mar | 99.7 | |
| d2q7wa1 | 396 | Aspartate aminotransferase, AAT {Escherichia coli | 99.69 | |
| d1yaaa_ | 412 | Aspartate aminotransferase, AAT {Baker's yeast (Sa | 99.69 | |
| d1c7ga_ | 456 | Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 | 99.68 | |
| d2hoxa1 | 425 | Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | 99.68 | |
| d1ajsa_ | 412 | Aspartate aminotransferase, AAT {Pig (Sus scrofa), | 99.68 | |
| d1n8pa_ | 393 | Cystathionine gamma-lyase (CYS3) {Baker's yeast (S | 99.68 | |
| d2ay1a_ | 394 | Aromatic aminoacid aminotransferase, AroAT {Paraco | 99.66 | |
| d3tata_ | 397 | Aromatic aminoacid aminotransferase, AroAT {Escher | 99.65 | |
| d1wyua1 | 437 | Glycine dehydrogenase (decarboxylating) subunit 1 | 99.65 | |
| d1vefa1 | 387 | Acetylornithine/acetyl-lysine aminotransferase Arg | 99.63 | |
| d1z7da1 | 404 | Ornithine aminotransferase {Plasmodium yoelii yoel | 99.62 | |
| d2byla1 | 404 | Ornithine aminotransferase {Human (Homo sapiens) [ | 99.62 | |
| d1sffa_ | 425 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.61 | |
| d1ax4a_ | 465 | Tryptophan indol-lyase (tryptophanase) {Proteus vu | 99.6 | |
| d2v1pa1 | 467 | Tryptophan indol-lyase (tryptophanase) {Escherichi | 99.6 | |
| d2gsaa_ | 427 | Glutamate-1-semialdehyde aminomutase (aminotransfe | 99.54 | |
| d1wyub1 | 471 | Glycine dehydrogenase subunit 2 (P-protein) {Therm | 99.54 | |
| d1zoda1 | 431 | Dialkylglycine decarboxylase {Pseudomonas cepacia | 99.43 | |
| d1s0aa_ | 429 | Adenosylmethionine-8-amino-7-oxononanoate aminotra | 99.41 | |
| d1ohwa_ | 461 | 4-aminobutyrate aminotransferase, GABA-aminotransf | 99.33 |
| >d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-50 Score=432.07 Aligned_cols=396 Identities=24% Similarity=0.328 Sum_probs=334.5
Q ss_pred HHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh
Q 038499 55 LTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL 134 (609)
Q Consensus 55 ~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~ 134 (609)
++.+|++||.....+ . .++++|||++++++.|+.|.+++.+.++..|+|++++.+..+....+.++++|+.+++++
T Consensus 4 ~~~vR~~FP~l~~~~---~-~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~e~~R~~ia~~l 79 (405)
T d1jf9a_ 4 VDKVRADFPVLSREV---N-GLPLAYLDSAASAQKPSQVIDAEAEFYRHGYAAVHRGIHTLSAQATEKMENVRKRASLFI 79 (405)
T ss_dssp HHHHHHTCGGGGCEE---T-TEECEECCTTTCCCCCHHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhChhcccCc---C-CCCeEEEeCccccCCCHHHHHHHHHHHHhccCCCccchhHHHHHHHHHHHHHHHHHHHHc
Confidence 688999998654111 1 136799999999999999999999999888999998777788888899999999999999
Q ss_pred CCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH----cCceEEEEec
Q 038499 135 GGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ----SLAEVVEIGL 210 (609)
Q Consensus 135 g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~ 210 (609)
|+.+.++|+|+ +|+|++++.++..+.. ..+++|+ .|++++.+|+++..+|+. .|++|+.+|+
T Consensus 80 ~~~~~~~i~~~-~~~T~~~~~~~~~~~~-----------~~~~~g~--~il~~~~e~~s~~~~~~~~a~~~g~~v~~~~~ 145 (405)
T d1jf9a_ 80 NARSAEELVFV-RGTTEGINLVANSWGN-----------SNVRAGD--NIIISQMEHHANIVPWQMLCARVGAELRVIPL 145 (405)
T ss_dssp TCSCGGGEEEE-SSHHHHHHHHHHHHHH-----------HHCCTTC--EEEEETTCCGGGTHHHHHHHHHHTCEEEEECB
T ss_pred CCCCccccccc-CcHHHHHHHHHhcccc-----------cccCCCC--EEEEEeCcccchHHHHHHHHHHcCcEEEEECC
Confidence 97654589998 6777788888766421 1257788 799999999999999964 5999999999
Q ss_pred CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCcc
Q 038499 211 DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYD 290 (609)
Q Consensus 211 ~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D 290 (609)
+++|.+|+++++++++ ++|+++++++++|.||.+.|+++|+++||++|+++++|++|+.|+.++|+..+ ++|
T Consensus 146 ~~~g~~~~~~~~~~i~-----~~t~lv~~~~v~~~tG~~~pi~~i~~~~~~~g~~~~vD~~q~~g~~~id~~~~---~~D 217 (405)
T d1jf9a_ 146 NPDGTLQLETLPTLFD-----EKTRLLAITHVSNVLGTENPLAEMITLAHQHGAKVLVDGAQAVMHHPVDVQAL---DCD 217 (405)
T ss_dssp CTTSCBCGGGHHHHCC-----TTEEEEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TCS
T ss_pred CCCCcCCHHHHHHhcc-----CCcEEEEEecCCCcccccCchHHhhhHHHHcCCeeecccceeccccccchhhc---CCc
Confidence 9999999999999988 79999999999999999999999999999999999999999999999999886 899
Q ss_pred EEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHH
Q 038499 291 AIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFW 370 (609)
Q Consensus 291 ~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~ 370 (609)
++++|+|||+ ||.|+|+++++++. ++.+.|...++....... ..+...+.+.+.|++.||+++..++.+..++.
T Consensus 218 ~~~~s~hK~~-Gp~G~g~l~v~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~ 291 (405)
T d1jf9a_ 218 FYVFSGHKLY-GPTGIGILYVKEAL--LQEMPPWEGGGSMIATVS---LSEGTTWTKAPWRFEAGTPNTGGIIGLGAALE 291 (405)
T ss_dssp EEEEEGGGTT-SCSSCEEEEECHHH--HTTCCCSSCSSSSEEECC---TTTCCEECCTTGGGCCSSCCHHHHHHHHHHHH
T ss_pred eeeccccccc-cCCCceeeeechhh--hcccCcccccccccCccc---cccccccccchhhhcCCCCcHHHHHHHHHHHH
Confidence 9999999996 59999999999999 667777777666654432 23334455668889999999988775554444
Q ss_pred HHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHh
Q 038499 371 VKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLN 450 (609)
Q Consensus 371 ~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~ 450 (609)
..+..|.+.+.++...+.+++.+.+..++.+.+.++. .+.++++|.+.. .++..+...|
T Consensus 292 ~~~~~g~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~--~r~~ivsf~~~~------------------~~~~~~~~~L- 350 (405)
T d1jf9a_ 292 YVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQ--NRLGVIAFNLGK------------------HHAYDVGSFL- 350 (405)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCT--TCCSEEEEEETT------------------CCHHHHHHHH-
T ss_pred HHHHhChHHHHHHHHHHHHHHHhhhhcCCcccccCCc--CcCcEEEEEcCC------------------CCHHHHHHHH-
Confidence 4477899999999999999999999999999888874 688999999876 4678888888
Q ss_pred hhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 451 DLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 451 ~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+++||.++.|++|+.+.- ..++ .+|++|||+++|||++||++++++|+++.+-
T Consensus 351 ~~~gI~v~~G~~c~~~~~-~~~~--------------------~~g~iRiS~~~ynt~eDid~l~~~l~~i~r~ 403 (405)
T d1jf9a_ 351 DNYGIAVRTGHHCAMPLM-AYYN--------------------VPAMCRASLAMYNTHEEVDRLVTGLQRIHRL 403 (405)
T ss_dssp HHTTEECEEECTTCHHHH-HHTT--------------------CSCEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHCCcEEEccchhhhhHH-HhcC--------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHh
Confidence 568999999999985431 1122 2589999999999999999999999998864
|
| >d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Probable cysteine desulfurase SufS species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=2.4e-49 Score=423.00 Aligned_cols=399 Identities=25% Similarity=0.344 Sum_probs=331.3
Q ss_pred HHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 038499 54 KLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKC 133 (609)
Q Consensus 54 ~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~ 133 (609)
+++.+|++||.....+ ..+++|||||+++++.|+.|++++.+.+...++|+|++.+..+....+.++++|+.++++
T Consensus 3 ~~a~iR~~FP~l~~~~----~~~~~iYld~a~~~~~p~~v~~~~~~~~~~~~~n~~s~~~~~~~~~~~~~e~aR~~ia~l 78 (408)
T d1t3ia_ 3 LAATVRQDFPILNQEI----NGHPLVYLDNAATSQKPRAVLEKLMHYYENDNANVHRGAHQLSVRATDAYEAVRNKVAKF 78 (408)
T ss_dssp HHHHHGGGCGGGSCEE----TTEECEECBTTTCCCCCHHHHHHHHHHHHHTCCCC--CCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHhCccccccc----CCCCeEEeeCccccCCCHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHH
Confidence 4578999998654211 224679999999999999999999999998899999877778888899999999999999
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH----cCceEEEEe
Q 038499 134 LGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ----SLAEVVEIG 209 (609)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~ 209 (609)
+|+++++.++|+ ++++++++.++..+.. ..+++|+ +|++++.+|+++..+|+. .|++++.++
T Consensus 79 lga~~~~~i~~~-~~tt~~~n~~~~~~~~-----------~~~~~g~--~il~s~~e~~s~~~~~~~~~~~~g~~v~~~~ 144 (408)
T d1t3ia_ 79 INARSPREIVYT-RNATEAINLVAYSWGM-----------NNLKAGD--EIITTVMEHHSNLVPWQMVAAKTGAVLKFVQ 144 (408)
T ss_dssp TTCSCGGGEEEE-SSHHHHHHHHHHHTHH-----------HHCCTTC--EEEEETTCCGGGTHHHHHHHHHHCCEEEEEC
T ss_pred hCCCCcccEEee-cchHHHHHHHHhhccc-----------cccCCCC--EEEeecccchhhhhhhhhhhhccCceEeeee
Confidence 999865578888 7788888888765421 1257888 799999999999988864 599999999
Q ss_pred cCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCc
Q 038499 210 LDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGY 289 (609)
Q Consensus 210 ~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~ 289 (609)
.+.++..++++|+++++ ++|++|++++++|.||.+.|+++|+++||++|+++++|++|++|+.++|+..+ ++
T Consensus 145 ~~~~~~~~~~~l~~~~~-----~~t~lv~i~~~~~~tG~~~p~~~i~~~~~~~g~~~ivDa~q~~g~~~id~~~~---~~ 216 (408)
T d1t3ia_ 145 LDEQESFDLEHFKTLLS-----EKTKLVTVVHISNTLGCVNPAEEIAQLAHQAGAKVLVDACQSAPHYPLDVQLI---DC 216 (408)
T ss_dssp BCTTSSBCHHHHHHHCC-----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCCCHHHH---TC
T ss_pred ccccccccHHHhhhccC-----CCceEEEEecccccccccCcHHHHhhhhhccCceeeeccceeccccccccccc---CC
Confidence 99999999999999998 79999999999999999999999999999999999999999999999999887 89
Q ss_pred cEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHH
Q 038499 290 DAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAF 369 (609)
Q Consensus 290 D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~ 369 (609)
|++++|+|||+ ||.|+|+|+++++. +...+|...||....... .....+.+.+.+++.||+++..++.+..++
T Consensus 217 D~~~~s~hK~~-gp~G~g~l~v~~~~--~~~~~p~~~g~~~~~~~~----~~~~~~~~~~~r~e~Gt~~~~~~~~l~~al 289 (408)
T d1t3ia_ 217 DWLVASGHKMC-APTGIGFLYGKEEI--LEAMPPFFGGGEMIAEVF----FDHFTTGELPHKFEAGTPAIAEAIALGAAV 289 (408)
T ss_dssp SEEEEEGGGTT-SCTTCEEEEECHHH--HHHSCCCSCSTTSEEEEC----SSCEEECCTTGGGCCSSCCHHHHHHHHHHH
T ss_pred ceEEecccccc-CCCCccccccchhh--hhcCCceecCCccccccc----ccccccCCchhhhcCCcHHHHHHHHHHHHH
Confidence 99999999996 58889999999998 445556655554433321 223334556788999999988877544444
Q ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC--CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHH
Q 038499 370 WVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTS--TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVAT 447 (609)
Q Consensus 370 ~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~--~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 447 (609)
......|.+++.++...+.+++.+.+...+++.++++.. ..+.++++|.+.. +++.++.+
T Consensus 290 ~~~~~~g~~~i~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~iv~f~~~~------------------~~~~~v~~ 351 (408)
T d1t3ia_ 290 DYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGDRAALASFNVAG------------------LHASDVAT 351 (408)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSCBCSEEEEEETT------------------BCHHHHHH
T ss_pred HHHHHcCHHHHHHHHHHHHhHHhhhhccCccccccCCCccccCcceEEEEEeCC------------------CCHHHHHH
Confidence 444678999999999999999999999999999998642 3567899999876 57889999
Q ss_pred HHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 448 LLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 448 ~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.| +..||.++.|++|+.|. +.+++ .+++||||+++|||++|||+++++|+++++..
T Consensus 352 ~L-~~~gI~v~~G~~c~~~~-~~~~~--------------------~~g~vRiS~~~ynt~~did~li~~L~~~~~~f 407 (408)
T d1t3ia_ 352 MV-DQDGIAIRSGHHCTQPL-HRLFD--------------------ASGSARASLYFYNTKEEIDLFLQSLQATIRFF 407 (408)
T ss_dssp HH-HTTTEECBCSCTTCHHH-HHHTT--------------------CCCCEEEECCTTCCHHHHHHHHHHHHHHHHHT
T ss_pred HH-hhCCcEEecCcccccHH-HHhhc--------------------CCccEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 88 55799999999999653 55544 25899999999999999999999999998753
|
| >d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cysteine desulfurase IscS species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.4e-44 Score=383.66 Aligned_cols=377 Identities=20% Similarity=0.254 Sum_probs=299.4
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhc--CCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVL--PFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~--~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
.||||+++++|.++.|.+++.+.+. ..|+||++..|..+....+.++++|+.+++++|++++ +|+|+ +|+|++++.
T Consensus 3 ~iYlD~aa~~p~~~~v~ea~~~~~~~~~~~~np~~~~~~~~~~~~~~~~~~R~~iA~~lg~~~~-~I~~~-~~~t~~l~~ 80 (391)
T d1p3wa_ 3 PIYLDYSATTPVDPRVAEKMMQFMTMDGTFGNPASRSHRFGWQAEEAVDIARNQIADLVGADPR-EIVFT-SGATESDNL 80 (391)
T ss_dssp SEECBTTTCCCCCHHHHHHHHTTTSTTSCCCCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGG-GEEEE-SSHHHHHHH
T ss_pred eEEeeCccccCCCHHHHHHHHHHHHhccccCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCCC-cEEEE-CCHHHHHHH
Confidence 5899999999999999999998875 4578999887778888899999999999999999987 89999 788888888
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH---cCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ---SLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~---~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
++..+.. ..+++|| +|++++.+|+++...|+. .|++++.++.+.++.+|+++++++++ +
T Consensus 81 ~~~~~~~-----------~~~~~gd--~Vv~~~~~~~s~~~~~~~~~~~G~~v~~v~~~~~~~~d~~~~~~~i~-----~ 142 (391)
T d1p3wa_ 81 AIKGAAN-----------FYQKKGK--HIITSKTEHKAVLDTCRQLEREGFEVTYLAPQRNGIIDLKELEAAMR-----D 142 (391)
T ss_dssp HHHHHHH-----------HHGGGCC--EEEEETTSCHHHHHHHHHHHHTTCEEEEECCCTTSCCCHHHHHHHCC-----T
T ss_pred HHhhhhh-----------hhcCCCC--EEEEeccccchHHHHHHHHHHcCCEEEEeCCCCCCeEcHHHHHHhCC-----C
Confidence 8765421 1147888 799999999999877764 59999999999999999999999998 7
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
+|++|++++++|+||.+.|+++|+++||+||+++++|++|+.|+.++|+... ++|++++|+|||+| |.|+|+++++
T Consensus 143 ~T~lv~is~~~n~tG~~~~~~~I~~~~~~~~~~~ivD~~~~~g~~~~d~~~~---~~D~~~~s~~k~~g-~~g~g~~~~~ 218 (391)
T d1p3wa_ 143 DTILVSIMHVNNEIGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPIDLSQL---KVDLMSFSGHKIYG-PKGIGALYVR 218 (391)
T ss_dssp TEEEEECCSBCTTTCCBCCHHHHHHHHHHHTCEEEEECTTTBTTBCCCTTTS---CCSEEEEESTTTTS-CSSCEEEEEC
T ss_pred CcEEEEEECCCCCCeeECCHHHHHHHhccCCcEEEEeeccccCCccccchhc---cccccccccccccC-CCceEEEEEe
Confidence 9999999999999999999999999999999999999999999999999986 89999999999975 7789999999
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERAL 392 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~ 392 (609)
++. +....|...||.. +.+...|+.++.+.+..+..+..... ......++.+++..++.
T Consensus 219 ~~~--~~~~~~~~~gg~~------------------~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~l~ 277 (391)
T d1p3wa_ 219 RKP--RVRIEAQMHGGGH------------------ERGMRSGTLPVHQIVGMGEAYRIAKE-EMATEMERLRGLRNRLW 277 (391)
T ss_dssp BTT--BCCCCCSSCSSCT------------------TTTTSCSCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred cch--hcccCCcccCCcc------------------ccCcccCcchhhhhhhhhhhhhHHHH-HhhHHHHHHHHHHHHHH
Confidence 998 6677777666544 44556677666554433322221111 23444577888899999
Q ss_pred HHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh---hh
Q 038499 393 ERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY---GH 469 (609)
Q Consensus 393 ~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~---~~ 469 (609)
+.|..+++..+..........+++|.... .....+...| .+|.++.|++|..+. .+
T Consensus 278 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~l---~~i~v~~G~~c~~~~~~~~~ 336 (391)
T d1p3wa_ 278 NGIKDIEEVYLNGDLEHGAPNILNVSFNY------------------VEGESLIMAL---KDLAVSSGSACTSASLEPSY 336 (391)
T ss_dssp HTTTTSTTEEECSCTTTSCTTEEEEEETT------------------SCHHHHHHHT---TTEECBCCCC------CCCH
T ss_pred HHHHhhcCeeecccccccCceEEEEEeCC------------------CChHHHHHHh---CCCEEEccccccCCccchhH
Confidence 99999988877655433334455555544 4566666655 488999999998531 12
Q ss_pred hh--cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcccccCCCccc
Q 038499 470 HL--LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQRFLPLYNFN 535 (609)
Q Consensus 470 ~l--l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~~~~p~y~~~ 535 (609)
.+ +|+.... .+|+||||+++|||++||++++++|++++++++.++|+|+..
T Consensus 337 ~l~~~g~~~~~---------------~~g~iRiS~~~~nt~edid~l~~~l~~~l~~lr~~~~~~~~~ 389 (391)
T d1p3wa_ 337 VLRALGLNDEL---------------AHSSIRFSLGRFTTEEEIDYTIELVRKSIGRLRDLSPLWEMY 389 (391)
T ss_dssp HHHHHTCCHHH---------------HHTEEEEECCTTCCHHHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHcCCCccc---------------cCCEEEEecCCCCCHHHHHHHHHHHHHHHHHHHHhChHHHhh
Confidence 22 2333221 248999999999999999999999999999999999999643
|
| >d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystine C-S lyase C-des species: Synechocystis sp. [TaxId: 1143]
Probab=100.00 E-value=3.9e-42 Score=363.15 Aligned_cols=360 Identities=16% Similarity=0.104 Sum_probs=290.5
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.+|||+++.|+.|..|.+++.+++...+.+++.. +..+....+.++++|+.+++++|++++ +|+|| +|+|++++.+
T Consensus 7 ~~~yld~~~~~~~p~~v~ea~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~r~~la~~~~~~~~-~i~~~-~g~t~a~~~~ 83 (381)
T d1elua_ 7 NKTYFNFGGQGILPTVALEAITAMYGYLQENGPFS-IAANQHIQQLIAQLRQALAETFNVDPN-TITIT-DNVTTGCDIV 83 (381)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHHHCSSS-HHHHHHHHHHHHHHHHHHHHHTTSCGG-GEEEE-SSHHHHHHHH
T ss_pred CCEEeeCCcccCCCHHHHHHHHHHHHHhhcCCCcc-chhhHHHHHHHHHHHHHHHHHhCCCcc-cEEEE-CChHHHhhhc
Confidence 67999999999999999999988887665565543 345556678899999999999999887 89999 6777889988
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH----cCceEEEEecCCCCC--CCHHHHHHHHhhhcc
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ----SLAEVVEIGLDDDGL--LDIEALRSKLELYKD 230 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~----~G~~vv~v~~~~~g~--ld~e~L~~al~~~~~ 230 (609)
+..+. +++|+ .|+++..+|+++..+|+. .|++++.++.+.+.. .+.++++++++
T Consensus 84 ~~~l~--------------~~~g~--~i~~~~~~~~s~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~l~~~i~---- 143 (381)
T d1elua_ 84 LWGLD--------------WHQGD--EILLTDCEHPGIIAIVQAIAARFGITYRFFPVAATLNQGDAAAVLANHLG---- 143 (381)
T ss_dssp HHHSC--------------CCTTC--EEEEETTCCHHHHHHHHHHHHHHCCEEEEECCGGGSSSSCHHHHHHTTCC----
T ss_pred chhhh--------------hcCCc--eEEEeccccceeeeccccccccccccccccccccccccchHHHHHHhhhc----
Confidence 87764 47888 799999999999887764 599999999765332 23566666666
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHh----CCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCc
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQY----GGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSP 306 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~----g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~ 306 (609)
++|+++++++++|+||.+.|+++|.++||+| |+++++|++|+.|..++++..+ ++|++++|+|||+++|.|+
T Consensus 144 -~~t~~v~i~~~~n~tG~~~~~~~I~~l~~~~~~~~~~~~~vD~~~~~g~~~~~~~~~---~~D~~~~s~~K~~~~p~G~ 219 (381)
T d1elua_ 144 -PKTRLVILSHLLWNTGQVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDFSRL---EVDYYAFTGHKWFAGPAGV 219 (381)
T ss_dssp -TTEEEEEEESBCTTTCCBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCTTTS---CCSEEEEESSSTTCCCTTC
T ss_pred -ccccccccccccccccccchhhHHHHHHhhccccccccccccccccccccccccccc---ccccccccccccccccchh
Confidence 6899999999999999999999999999985 6999999999999999999886 8999999999999999999
Q ss_pred EEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH--HHHHHHHHHhcC-HHHHHHH
Q 038499 307 GILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR--AALAFWVKEYIG-HEVIKKQ 383 (609)
Q Consensus 307 G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~--aal~~~~~~~~g-~~~i~~~ 383 (609)
|+|+++++. ...+.|...|++...+... .....+.....++..||++....+. ++++++ ...| .+.+.++
T Consensus 220 g~l~~~~~~--~~~~~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~gt~~~~~~~~~~~a~~~~--~~~g~~~~~~~~ 292 (381)
T d1elua_ 220 GGLYIHGDC--LGEINPTYVGWRSITYGAK---GEPTGWAEGGKRFEVATSAYPQYAGLLAALQLH--QRQGTAEERYQA 292 (381)
T ss_dssp EEEEECTTT--GGGCCCCSCCTTTEEECTT---SCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHH--HHHCCHHHHHHH
T ss_pred hHHHhhHHH--HHhcCcccccccccccccc---cccccccccccccccccccchhhhhhhhhhhhH--HHhcccccchhh
Confidence 999999999 5677888888766544321 1222334446778889998877654 444443 4444 4555688
Q ss_pred HHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCccc
Q 038499 384 EETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCAC 463 (609)
Q Consensus 384 ~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~c 463 (609)
..++++++.+.|+++|+++++++. .++.++++|.+.+ . .+.+.+.+.|.+ .||.++. +
T Consensus 293 ~~~~~~~l~~~L~~~~~~~~~~~~-~~~~~~vsf~~~~-~----------------~~~~~i~~~L~~-~gi~v~~---~ 350 (381)
T d1elua_ 293 ICQRSEFLWRGLNQLPHVHCLATS-APQAGLVSFTVDS-P----------------LGHRAIVQKLEE-QRIYLRT---I 350 (381)
T ss_dssp HHHHHHHHHHHHHHSTTEEESCSS-CCSSSEEEEEECS-S----------------SCHHHHHHHHHH-TTEECEE---E
T ss_pred hhhHHHHHHHHHhcCCCeEecCCC-CccccEEEEEcCC-C----------------CCHHHHHHHHHh-CCcEEEe---c
Confidence 888999999999999999999874 4688999998865 3 356788888865 6998872 1
Q ss_pred CChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 464 AGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 464 a~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
. .++++|+|+++|||++|||+++++|+++
T Consensus 351 ~-----------------------------~~~~lRis~~~~nt~edid~ll~~l~e~ 379 (381)
T d1elua_ 351 A-----------------------------DPDCIRACCHYITDEEEINHLLARLADF 379 (381)
T ss_dssp T-----------------------------TTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred C-----------------------------CCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence 1 2689999999999999999999999864
|
| >d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: NifS-like protein/selenocysteine lyase species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.5e-41 Score=355.30 Aligned_cols=364 Identities=22% Similarity=0.295 Sum_probs=283.4
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQ 157 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~ 157 (609)
.||||+++++|.|+.|.+++.+.+.+.++||++. +..+....+.++++|+.+++++|++++ +|+|+ +|+|++++.++
T Consensus 2 ~iyld~a~~~~~p~~v~ea~~~~~~~~~~np~~~-~~~~~~~~~~~~~aR~~ia~l~~~~~~-~i~~~-~~~T~~l~~~~ 78 (376)
T d1eg5a_ 2 RVYFDNNATTRVDDRVLEEMIVFYREKYGNPNSA-HGMGIEANLHMEKAREKVAKVLGVSPS-EIFFT-SCATESINWIL 78 (376)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHTCCCCTTCS-SHHHHHHHHHHHHHHHHHHHHHTSCGG-GEEEE-SCHHHHHHHHH
T ss_pred EEEEECcccccCCHHHHHHHHHHHHHcCCCCccc-cHHHHHHHHHHHHHHHHHHHHcCCCCC-cEEEE-CCHHHHHHhhh
Confidence 3899999999999999999999999999999875 567888889999999999999999987 89998 67777888887
Q ss_pred HHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH---HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCc
Q 038499 158 EVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR---QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRP 234 (609)
Q Consensus 158 ~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~---~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~ 234 (609)
..++.. .+.+|+ +|++...+|+++...|+ ..|++|+.||++++|.+|+++++++|+ ++|
T Consensus 79 ~~~~~~-----------~~~~g~--~v~~~~~~~~~~~~~~~~~~~~g~~v~~vp~~~~~~id~~~l~~~i~-----~~t 140 (376)
T d1eg5a_ 79 KTVAET-----------FEKRKR--TIITTPIEHKAVLETMKYLSMKGFKVKYVPVDSRGVVKLEELEKLVD-----EDT 140 (376)
T ss_dssp HHHHHH-----------TTTTCC--EEEECTTSCHHHHHHHHHHHHTTCEEEECCBCTTSCBCHHHHHHHCC-----TTE
T ss_pred hccccc-----------ccccCc--ccccccccchhhHHHHHHHHhcCCEEEEEcCCCCCeECHHHHHHhcC-----CCc
Confidence 765311 135666 67888777777776664 359999999999999999999999998 799
Q ss_pred eEEEEecccCccccccCHHHHHHHHHHh--CCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 235 ILGSFSACSNVTGIYSDTRSIARLLHQY--GGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 235 ~lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
+++++++++|+||.+.|+++|.++++.+ |+++++|++|++|..++|+... ++|++++|+|||+ ||.|.|+++++
T Consensus 141 ~lv~is~v~~~tG~~~~~~~i~~~~~~~~~~~~~~vD~~q~~g~~~~d~~~~---~~D~~~~s~~K~~-gp~G~~~l~~~ 216 (376)
T d1eg5a_ 141 FLVSIMAANNEVGTIQPVEDVTRIVKKKNKETLVHVDAVQTIGKIPFSLEKL---EVDYASFSAHKFH-GPKGVGITYIR 216 (376)
T ss_dssp EEEEEESBCTTTCBBCCHHHHHHHHHHHCTTCEEEEECTTTTTTSCCCCTTT---CCSEEEEEGGGGT-SCTTCEEEEEC
T ss_pred eEEEEECCccccceeeeehhhhhhhhhcccCceeEEEeeecccccccccccc---Cccceecccceee-cCCCceeEEec
Confidence 9999999999999999999999998776 8999999999999999999886 8999999999997 58889999999
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERAL 392 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~ 392 (609)
++. .+.|...||+. ......|+++......++..... ..........+...+..++.
T Consensus 217 ~~~----~~~p~~~g~~~------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 273 (376)
T d1eg5a_ 217 KGV----PIRPLIHGGGQ------------------ERGLRSGTQNVPGIVGAARAMEI-AVEELSEAAKHMEKLRSKLV 273 (376)
T ss_dssp TTS----CCCCSBCSSCT------------------TTTTBCSCCCHHHHHHHHHHHHH-HHHTHHHHHHHHHHHHHHHH
T ss_pred cCc----ccCCcccCCCC------------------cccccCCcccchhhhhHHHHhhc-cccchhhhhhhhhhhhhhhc
Confidence 886 46677777665 33445677666655433322221 22345566677777888888
Q ss_pred HHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh---hh
Q 038499 393 ERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY---GH 469 (609)
Q Consensus 393 ~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~---~~ 469 (609)
+.|..... .+.......+..++.+.+.. +++..+...| +.+||.+|+|++|+.+. .+
T Consensus 274 ~~l~~~~~-~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~L-~~~gI~vr~G~~c~~~~~~~~~ 333 (376)
T d1eg5a_ 274 SGLMNLGA-HIITPLEISLPNTLSVSFPN------------------IRGSTLQNLL-SGYGIYVSTSSACTSKDERLRH 333 (376)
T ss_dssp HHHHTTTC-EECSCTTSBCTTEEEEECTT------------------CCHHHHHHHH-HHTTEECBC------------C
T ss_pred cccccccc-cccccccccccceeeeccCC------------------CCHHHHHHHH-hhCCeEEeCcchhcCCccchhH
Confidence 88877643 44444444566777777766 5788888888 56799999999998531 11
Q ss_pred hhc--CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 470 HLL--DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 470 ~ll--~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.+. |+.... .+++||+|+++|+|++|||+++++|++++..
T Consensus 334 ~l~~~gi~~~~---------------~~~~iRiS~~~ynt~edid~l~~~L~~iv~~ 375 (376)
T d1eg5a_ 334 VLDAMGVDRRI---------------AQGAIRISLCKYNTEEEVDYFLKKIEEILSF 375 (376)
T ss_dssp HHHHTTCCHHH---------------HHHEEEEECCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCccc---------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhh
Confidence 222 333211 2478999999999999999999999999864
|
| >d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Kynureninase species: Pseudomonas fluorescens [TaxId: 294]
Probab=100.00 E-value=1.9e-39 Score=344.81 Aligned_cols=380 Identities=18% Similarity=0.198 Sum_probs=287.8
Q ss_pred HHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHH
Q 038499 54 KLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKC 133 (609)
Q Consensus 54 ~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~ 133 (609)
.+..+|++|+..+ +.||||+++.|+.|..|.+++.+++...++|++.. +..+..+.+.++++|+.++++
T Consensus 14 ~l~~~R~~F~~~~----------~~iYLd~as~g~~p~~v~~a~~~~l~~~~~~~~~~-~~~~~~~~~~~e~~R~~iA~l 82 (404)
T d1qz9a_ 14 SLAPLRQQFALPE----------GVIYLDGNSLGARPVAALARAQAVIAEEWGNGLIR-SWNSAGWRDLSERLGNRLATL 82 (404)
T ss_dssp TTGGGGGGBCCCT----------TCEECCTTTSCCCBTTHHHHHHHHHHTCCCCCGGG-HHHHTSGGGHHHHHHHHHHTT
T ss_pred cHHHHHhcCCCCC----------CCEEcCCcccccCCHHHHHHHHHHHHHHhcccCcc-cccchhHHHHHHHHHHHHHHH
Confidence 4678899998554 68999999999999999999999988777777643 223334457788999999999
Q ss_pred hCCCCCCcEEEeCChHHHHHHHHHHH-hcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC
Q 038499 134 LGGGQEDAMIFCGSGTTAAIKRLQEV-MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD 212 (609)
Q Consensus 134 ~g~~~~~~vift~sGttaal~~l~~~-l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~ 212 (609)
+|++++ +|+|++++|+ +++.++.. +.. .....+++ .|+++..+|+++...|...++++..++.+.
T Consensus 83 lga~~~-ei~~~~~~T~-~~~~~~~~~~~~----------~~~~~~~~--~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (404)
T d1qz9a_ 83 IGARDG-EVVVTDTTSI-NLFKVLSAALRV----------QATRSPER--RVIVTETSNFPTDLYIAEGLADMLQQGYTL 148 (404)
T ss_dssp TTCCTT-SEEECSCHHH-HHHHHHHHHHHH----------HHHHSTTC--CEEEEETTSCHHHHHHHHHHHHHHCSSCEE
T ss_pred hCCCCC-cEEEecCchH-HHHHHhhhhhhh----------hcccCCCc--EEEEeccccchHHHHHHhhhheeeeeceec
Confidence 999998 8999955555 55554432 211 11135677 577888888888878877667666666656
Q ss_pred CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEE
Q 038499 213 DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAI 292 (609)
Q Consensus 213 ~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v 292 (609)
++..++++++++++ ++|++|++++++|.||.+.|+++|+++||++|+++++|++|+.|..++++..+ ++|++
T Consensus 149 ~~~~~~~~~~~~i~-----~~T~lV~i~~v~~~tG~~~pv~~i~~~~~~~~~~~~vD~~q~~g~~~~~~~~~---~~d~~ 220 (404)
T d1qz9a_ 149 RLVDSPEELPQAID-----QDTAVVMLTHVNYKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQA---GADYA 220 (404)
T ss_dssp EEESSGGGHHHHCS-----TTEEEEEEESBCTTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCCCHHHH---TCSEE
T ss_pred cccccchhHHHhcC-----CCceEEEEecccccccceecHHHHhccccccccceeEEeeccccccccccccc---cceEE
Confidence 67778899999998 79999999999999999999999999999999999999999999999999886 88999
Q ss_pred EEcCCCCCCC-CCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHH
Q 038499 293 FLSTHKFLGG-PGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWV 371 (609)
Q Consensus 293 ~~S~hK~lgg-p~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~ 371 (609)
++|.|||+++ |+|+|+++.++.. +..+++...+++... ..+.............+++.++++..+..........
T Consensus 221 ~~s~~K~~~~~~g~~g~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (404)
T d1qz9a_ 221 IGCTYKYLNGGPGSQAFVWVSPQL--CDLVPQPLSGWFGHS--RQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDV 296 (404)
T ss_dssp EECSSSTTCCCTTCCCEEEECTTT--TTTSCCSCCCGGGBC--TTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHH
T ss_pred EEechhhcccCCceEEEEEechhh--hhhCCccccccCCcc--ccccccccccccccchhhhhhhccchhHHHHHHHHHH
Confidence 9999999855 5568999999888 555554444332211 1111122222333456778888888776654444444
Q ss_pred HHhcCHHHHHHHHHHHHHHHHH---HhCCCCceEEeCCCC-CCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHH
Q 038499 372 KEYIGHEVIKKQEETYIERALE---RLLPNQNIKILGNTS-TKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVAT 447 (609)
Q Consensus 372 ~~~~g~~~i~~~~~~l~~~~~~---~L~~~p~i~v~~~~~-~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~ 447 (609)
....+.+.+.++...+.+.+.. .+...++++++++.+ ..|.++++|.+.. +..+.+
T Consensus 297 ~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~i~~p~~~~~r~~~vsf~~~~--------------------~~~v~~ 356 (404)
T d1qz9a_ 297 FAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPE--------------------GYAVIQ 356 (404)
T ss_dssp HTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCCEECSCSSGGGBCSEEEEECTT--------------------HHHHHH
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHhhccCCCEEEECCCCccceeeEEEEecCC--------------------HHHHHH
Confidence 4678889888877777766544 445678999998754 4678999987654 678999
Q ss_pred HHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEec-CCCCCHHHHHHHHHHHHHHHHh
Q 038499 448 LLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISF-PYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 448 ~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~-~~~~t~eeid~ll~al~~v~~~ 524 (609)
.|.+ .||.+. .|+ ++.||||+ |+|||++||++++++|++++++
T Consensus 357 ~L~~-~gi~~~---~r~------------------------------~~~lRiS~~h~ynt~~did~~~~~L~~vl~~ 400 (404)
T d1qz9a_ 357 ALID-RGVIGD---YRE------------------------------PRIMRFGFTPLYTTFTEVWDAVQILGEILDR 400 (404)
T ss_dssp HHHT-TTEECE---EET------------------------------TTEEEEECCTTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHH-CCCEEe---ecC------------------------------CCeEEEECCCCCCCHHHHHHHHHHHHHHHHh
Confidence 9965 598542 222 58999999 5799999999999999999875
|
| >d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.4e-34 Score=301.66 Aligned_cols=355 Identities=15% Similarity=0.126 Sum_probs=265.7
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
++.++.|.+++.... .++.+..+.++++++++.+++++|++.+..|+|+|+||. +++.++..+
T Consensus 28 ~~~~~~Vl~am~~~~----------i~HRs~~f~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~-a~~~~i~~l------ 90 (388)
T d1h0ca_ 28 SNLPPRIMAAGGLQM----------IGSMSKDMYQIMDEIKEGIQYVFQTRNPLTLVISGSGHC-ALEAALVNV------ 90 (388)
T ss_dssp CCCCHHHHHHHTCCC----------CCTTSHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHH-HHHHHHHHH------
T ss_pred CCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHH-HHHHHHHHh------
Confidence 345667766653211 123567889999999999999999986657899855554 687777665
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHH--HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSW--RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~--~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
+.+++ .+++...+|++....+ ...+..++.+..+..+.+|.+++++.+.. ++++++++++++|
T Consensus 91 ---------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~n 155 (388)
T d1h0ca_ 91 ---------LEPGD--SFLVGANGIWGQRAVDIGERIGARVHPMTKDPGGHYTLQEVEEGLAQ----HKPVLLFLTHGES 155 (388)
T ss_dssp ---------CCSSC--CEEECBSSHHHHHHHHHHHHHC--CBCCBCCTTCCCCHHHHHHHHHH----HCCSEEEEESEET
T ss_pred ---------hccCC--ceeeecccceeeeeccccccccccccccccCCccccchHHHHHHhcc----CCcceEEEeeeee
Confidence 46788 4778888888876544 34577777787777788999999888875 5789999999999
Q ss_pred ccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCC
Q 038499 245 VTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPS 324 (609)
Q Consensus 245 ~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~ 324 (609)
.||.+.|+++|+++||+||+++++|++|+.|+.++|+..+ ++|++++|.|||++||.|.|++++++.. ++.+.+.
T Consensus 156 ~tG~i~pi~~i~~~~~~~g~~~~vD~~qs~g~~~~d~~~~---~~D~~~~s~~K~~~gp~g~~~~~~~~~~--~~~~~~~ 230 (388)
T d1h0ca_ 156 STGVLQPLDGFGELCHRYKCLLLVDSVASLGGTPLYMDRQ---GIDILYSGSQKALNAPPGTSLISFSDKA--KKKMYSR 230 (388)
T ss_dssp TTTEECCCTTHHHHHHTTTCEEEEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCTTCEEEEECHHH--HHHHTTC
T ss_pred ccccccCHHHHHHHhhcccccceecccccccccccccccc---ccceecccccccccCCCceEEEeecHHH--HHhhhhc
Confidence 9999999999999999999999999999999999999987 8999999999999999999999999887 3333332
Q ss_pred ccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEe
Q 038499 325 TCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKIL 404 (609)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~ 404 (609)
..++.. .+.+ +.............+...+|+++..+.....+++.....|.+.+.++..++.+++++.+... ++.++
T Consensus 231 ~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~-g~~~~ 307 (388)
T d1h0ca_ 231 KTKPFS-FYLD-IKWLANFWGCDDQPRMYHHTIPVISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQAL-GLQLF 307 (388)
T ss_dssp SSCCSC-STTC-HHHHHHHTTCSSSCCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBS
T ss_pred cccccc-cccc-cchhhhhhhhccccccccccccHHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhc-Ccccc
Confidence 222211 0000 00000000111244566788888777655555555567899999999999999999998776 45554
Q ss_pred CCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHH
Q 038499 405 GNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIR 483 (609)
Q Consensus 405 ~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~ 483 (609)
......+.+ +++|.+.. + ++..++.+.|.+++||.++.|..|.
T Consensus 308 ~~~~~~rs~~i~~~~~p~-~----------------~~~~~~~~~L~~~~gI~v~~G~~~~------------------- 351 (388)
T d1h0ca_ 308 VKDPALRLPTVTTVAVPA-G----------------YDWRDIVSYVIDHFDIEIMGGLGPS------------------- 351 (388)
T ss_dssp SCSGGGBCTTEEEEECCT-T----------------CCHHHHHHHHHHHHCEECEECCGGG-------------------
T ss_pred cCCHHHcCCeEEEEECCC-C----------------CCHHHHHHHHHhcCCEEEeCCchhh-------------------
Confidence 443334454 56677654 2 5788999998888899999886553
Q ss_pred HHHhhCCCCCCCcEEEEe-cCCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 484 SAIQKGYVGVKPGWTRIS-FPYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 484 ~~~~~~~~~~~~g~iRls-~~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
+.+.+||| +++++|.+|||+++++|+++++++.|
T Consensus 352 ----------~~~~iRis~~g~~~t~edid~li~aL~~~L~~l~k 386 (388)
T d1h0ca_ 352 ----------TGKVLRIGLLGCNATRENVDRVTEALRAALQHCPK 386 (388)
T ss_dssp ----------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHHHSCC
T ss_pred ----------cCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 34789999 79999999999999999999998765
|
| >d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]
Probab=99.98 E-value=7.5e-31 Score=275.21 Aligned_cols=355 Identities=16% Similarity=0.111 Sum_probs=260.2
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQE 158 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~ 158 (609)
.||...+-.+.|+.|.+++.... .++.+..+.+.++++++.+++++|++++..|+|+| |+|.+++.++.
T Consensus 19 ~~l~~PGP~~v~~~Vl~am~~~~----------~~hr~~ef~~i~~~~r~~l~~ll~~~~~~~i~~~g-~gT~~~~~~~~ 87 (377)
T d1vjoa_ 19 RLLLGPGPSNAHPSVLQAMNVSP----------VGHLDPAFLALMDEIQSLLRYVWQTENPLTIAVSG-TGTAAMEATIA 87 (377)
T ss_dssp CEECSSSCCCCCHHHHHHHSSCC----------CCTTSHHHHHHHHHHHHHHHHHHTCCCSCEEEESS-CHHHHHHHHHH
T ss_pred ceeecCCCCCCCHHHHHHhCcCC----------CCCCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEcC-cHHHHHHHHHH
Confidence 46666666677888877763211 13457788999999999999999997765777774 55556777766
Q ss_pred HhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH--HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceE
Q 038499 159 VMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR--QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPIL 236 (609)
Q Consensus 159 ~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~--~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~l 236 (609)
.+ +.+++ .+++....|.+....+. ..+..+..+....+...+.+..+..... +++++
T Consensus 88 ~~---------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 146 (377)
T d1vjoa_ 88 NA---------------VEPGD--VVLIGVAGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALET----HRPAI 146 (377)
T ss_dssp HH---------------CCTTC--EEEEEESSHHHHHHHHHHHHTTCEEEEEECCTTCCCCHHHHHHHHHH----HCCSE
T ss_pred hc---------------ccccc--ccceeeechhhhhhhhhhhhhcccccccccCCCCcccchhhhhhhhc----Cccee
Confidence 55 36777 57777778877654443 3466666666666555677777666654 57899
Q ss_pred EEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhh
Q 038499 237 GSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALY 316 (609)
Q Consensus 237 v~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~ 316 (609)
+++++++|.||.+.|+++|+++||++|+++++|++|+.|..++++..+ ++|+++++.|||++||.|+|++++++..
T Consensus 147 v~~~~~~~~tg~~~~i~~i~~~~~~~g~~~~vDa~~~~g~~~~~~~~~---~~d~~~~s~~K~~~gp~g~~~~~~~~~~- 222 (377)
T d1vjoa_ 147 LALVHAETSTGARQPLEGVGELCREFGTLLLVDTVTSLGGVPIFLDAW---GVDLAYSCSQKGLGCSPGASPFTMSSRA- 222 (377)
T ss_dssp EEEESEETTTTEECCCTTHHHHHHHHTCEEEEECTTTTTTSCCCTTTT---TCSEEECCSSSTTCSCSSCEEEEECHHH-
T ss_pred eeeeeeeccceeeechhhhhhhhhhccceEEEecchhhhhhhhccccc---ccceeeecccccccCCCEEEEecchhhH-
Confidence 999999999999999999999999999999999999999999999987 8999999999999999999999999887
Q ss_pred ccCCCCCCccCCCceEeeccccccc-ccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKD-TLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL 395 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~-~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L 395 (609)
++...+...++.. +.... .........+...+++++..........+.....|.+.+.++.+++..++.+.+
T Consensus 223 -~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l 295 (377)
T d1vjoa_ 223 -IEKLQRRRTKVAN------WYLDMNLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERL 295 (377)
T ss_dssp -HHHHHTCSSCCSC------STTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred -HhhhhccCCCCcc------eeeccchhhhccCcccccccccceechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhh
Confidence 3333333222221 00000 001111134455667777665555445555567799999999999999999999
Q ss_pred CCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCC
Q 038499 396 LPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD 475 (609)
Q Consensus 396 ~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~ 475 (609)
... ++.++.+.......+++|.+.. + ++..++.+.|.+++||.++.|..|.
T Consensus 296 ~~~-~~~~~~~~~~rs~~v~~~~~p~-~----------------~~~~~l~~~L~~~~gI~v~~G~~~~----------- 346 (377)
T d1vjoa_ 296 EDI-GLSLHVEKEYRLPTLTTVCIPD-G----------------VDGKAVARRLLNEHNIEVGGGLGEL----------- 346 (377)
T ss_dssp HHT-TCCBSSCGGGBCSSEEEEECCT-T----------------CCHHHHHHHHHHHHCEECEECCGGG-----------
T ss_pred hcc-CceeecChHhcCCeEEEEECCC-C----------------CCHHHHHHHHHhcCCEEEecCcccc-----------
Confidence 875 5555554332333455666644 2 5788999988888999999876432
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEe-cCCCCCHHHHHHHHHHHHHHHH
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRIS-FPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls-~~~~~t~eeid~ll~al~~v~~ 523 (609)
+++.+||| +++++|+|||++++++|+++++
T Consensus 347 ------------------~~~~~Ris~~g~~~t~edi~~lv~al~~~l~ 377 (377)
T d1vjoa_ 347 ------------------AGKVWRVGLMGFNSRKESVDQLIPALEQVLR 377 (377)
T ss_dssp ------------------TTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred ------------------cCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence 35789999 5899999999999999999863
|
| >d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 2-aminoethylphosphonate transaminase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.97 E-value=1.3e-30 Score=271.98 Aligned_cols=326 Identities=11% Similarity=0.030 Sum_probs=228.3
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCc-EEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDA-MIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS 193 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~-vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s 193 (609)
.+....+.++++|+.+++++|++++.. ++|++ |+|.+++.++..+- .+++. ++++...+++.
T Consensus 27 ~~~~~~~~~~~~r~~l~~l~~~~~~~~~i~~t~-s~T~~~~~~~~~l~---------------~~~~~-~~~~~~~~~~~ 89 (361)
T d1m32a_ 27 DDDYNIGVVEQIRQQLTALATASEGYTSVLLQG-SGSYAVEAVLGSAL---------------GPQDK-VLIVSNGAYGA 89 (361)
T ss_dssp SHHHHTTTHHHHHHHHHHHHCSSSSEEEEEEES-CHHHHHHHHHHHSC---------------CTTCC-EEEEESSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHhCCCCCCEEEEECC-CHHHHHHHHHHHhh---------------hhccc-cceeeehhhhh
Confidence 445567788999999999999987633 67774 55668888877652 45554 55555555554
Q ss_pred hHHH-HHHcCceEEEEecCCCCCCCHHHH--HHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 194 NLLS-WRQSLAEVVEIGLDDDGLLDIEAL--RSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 194 ~~~~-~~~~G~~vv~v~~~~~g~ld~e~L--~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
.... +...+.....+........+.+.. ...+. ++++++++++++|.||.+.|+++|+++||+||+++++|+
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~tG~~~~i~~i~~~~~~~g~~~~vDa 164 (361)
T d1m32a_ 90 RMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNAD-----PTISHIAMVHSETTTGMLNPIDEVGALAHRYGKTYIVDA 164 (361)
T ss_dssp HHHHHHHHHTCCEEEEECCTTSCCCHHHHHHHHHHC-----TTCCEEEEESEETTTTEECCHHHHHHHHHHHTCEEEEEC
T ss_pred hHHHHhhhhhcccccccccccCCccchhhHHHHHhc-----cCccceEEEeeecccccchhhhhhhhhhcccceeeEeec
Confidence 4433 344566666666555444444333 33333 689999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEE 350 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~ 350 (609)
+|++|..++|+.++ ++|++++|+|||++||.|+|+++++++. +....+...++.... ....+......
T Consensus 165 ~qs~G~~~~d~~~~---~~D~~~~s~~K~l~gp~G~g~l~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~ 232 (361)
T d1m32a_ 165 MSSFGGIPMDIAAL---HIDYLISSANKCIQGVPGFAFVIAREQK--LAACKGHSRSLSLDL-------YAQWRCMEDNH 232 (361)
T ss_dssp TTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSSEEEEEEEHHH--HTTCTTCCSCSTTCH-------HHHHHHHHHTT
T ss_pred ccccCccccccccc---ccceEEeeecccccCCCCceEEEechhh--hhhhccccccccccc-------hhhhccccccc
Confidence 99999999999987 8999999999999999999999999999 567777766543311 11111122233
Q ss_pred cccCCChhHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcc-eEEEEeccCCCCCcC
Q 038499 351 RESGGTPQVIQMIRAALAFWV-KEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA-ILSFNIHSSTINSSL 428 (609)
Q Consensus 351 r~~~gtp~i~~~~~aal~~~~-~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~ 428 (609)
+...+|++....+....++.. .+..+.+.+..+...+.+.+.+.+... ++.+..+. ..+++ +++|.... +
T Consensus 233 ~~~~~t~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~~~-~~rs~~v~~~~~p~-~----- 304 (361)
T d1m32a_ 233 GKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL-GFNTLLDD-ELHSPIITAFYSPE-D----- 304 (361)
T ss_dssp TCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT-TCCBSSCG-GGBCSSEEEEECCC-C-----
T ss_pred cccCCCCCchhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhc-CCcccCCh-hhcCCcEEEEECCC-C-----
Confidence 444567666555433322222 233345666777777888888888765 55555443 23444 44554432 1
Q ss_pred CCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCH
Q 038499 429 GENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSN 508 (609)
Q Consensus 429 ~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ 508 (609)
...+..++.+.|.+ .||.+.+|..+. ++.+|||+..|+++
T Consensus 305 ---------~~~~~~~~~~~l~~-~gi~i~~G~~~~------------------------------~~~~Ris~~g~~~~ 344 (361)
T d1m32a_ 305 ---------PQYRFSEFYRRLKE-QGFVIYPGKVSQ------------------------------SDCFRIGNIGEVYA 344 (361)
T ss_dssp ---------TTCCHHHHHHHHHH-TTEECEECCCSS------------------------------SCEEEEECCSSCCH
T ss_pred ---------CCCCHHHHHHHHHH-CCcEEECCCcCC------------------------------CCEEEEeCCCCCCH
Confidence 12467889999865 699988774332 58899997557899
Q ss_pred HHHHHHHHHHHHHH
Q 038499 509 EEFEFTLEALEFIA 522 (609)
Q Consensus 509 eeid~ll~al~~v~ 522 (609)
+||++++++|++++
T Consensus 345 ~di~~lv~al~~~L 358 (361)
T d1m32a_ 345 ADITALLTAIRTAM 358 (361)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999874
|
| >d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: 3-hydroxykynurenine transaminase species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]
Probab=99.97 E-value=2.8e-30 Score=272.19 Aligned_cols=341 Identities=15% Similarity=0.099 Sum_probs=245.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc
Q 038499 114 YVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS 193 (609)
Q Consensus 114 ~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s 193 (609)
+.+..+.++++++|+.|++++|+++.+.|+|+ +|+|.+++.++..+ +.+++ .+++....|.+
T Consensus 43 hr~~ef~~i~~~~r~~L~~ll~~~~~~~i~~~-gsgT~a~ea~~~~l---------------~~~~~--~vl~~~~g~~~ 104 (388)
T d2ch1a1 43 NFHAELFRTMDEVKDGLRYIFQTENRATMCVS-GSAHAGMEAMLSNL---------------LEEGD--RVLIAVNGIWA 104 (388)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHTCCCSCEEEES-SCHHHHHHHHHHHH---------------CCTTC--EEEEEESSHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCCCeEEEEc-CcHHHHHHHHHHHh---------------ccccc--ccccccccccc
Confidence 45778899999999999999999765345565 56666888887766 36777 57766677766
Q ss_pred hHHH--HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecc
Q 038499 194 NLLS--WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 194 ~~~~--~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A 271 (609)
.... +...+..++.+...+....+.+..+.++.. .+++++++++++|.||.+.|+++|+++||++|+++++|++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~t~tG~~~~~~~i~~~~~~~~~~~~vD~~ 180 (388)
T d2ch1a1 105 ERAVEMSERYGADVRTIEGPPDRPFSLETLARAIEL----HQPKCLFLTHGDSSSGLLQPLEGVGQICHQHDCLLIVDAV 180 (388)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTSCCCHHHHHHHHHH----HCCSEEEEESEETTTTEECCCTTHHHHHHHTTCEEEEECT
T ss_pred ccchhhhhhhcccccccccccccccchhhhhhhhcc----CCcceeeeeecccccccccchhhhcchhccccceeeeeee
Confidence 5533 345688888888877777788888887765 5789999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc-ccccc
Q 038499 272 ASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL-EDIEE 350 (609)
Q Consensus 272 ~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~-~~~~~ 350 (609)
++.++.++|+..+ ++|++++|.|||++||.|+|+++++++. +....+...++.. .+. .+ .....+. ...+.
T Consensus 181 ss~g~~pid~~~~---~~d~~~~s~~K~~~gp~G~g~~~~~~~~--~~~~~~~~~~~~~-~~~-~~-~~~~~~~~~~~~~ 252 (388)
T d2ch1a1 181 ASLCGVPFYMDKW---EIDAVYTGAQKVLGAPPGITPISISPKA--LDVIRNRRTKSKV-FYW-DL-LLLGNYWGCYDEP 252 (388)
T ss_dssp TTBTTBCCCTTTT---TCCEEECCCC-CCCCCSSCEEEEECHHH--HHHHHTCSSCCSC-GGG-CH-HHHHHHTTCSSSC
T ss_pred ecccccccchhcc---CceEEEEccccccCCCCeEEEEeccHHH--HHhhhcccCcccc-ccc-cc-hhhhhhhcccccc
Confidence 9999999999987 8999999999999999999999999887 3332222111111 000 00 0000010 11123
Q ss_pred cccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcc-eEEEEeccCCCCCcCC
Q 038499 351 RESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA-ILSFNIHSSTINSSLG 429 (609)
Q Consensus 351 r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~ 429 (609)
....+|+++..+..+..++......+.+....+.+....+....+... ++.++......|++ +++|.+.. +
T Consensus 253 ~~~~~t~~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~rs~~v~~~~~p~-g------ 324 (388)
T d2ch1a1 253 KRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKM-GLDIFVKDPRHRLPTVTGIMIPK-G------ 324 (388)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHH-TCCBSSCSGGGBCTTEEEEECCT-T------
T ss_pred cccCccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhc-ccccccCCHHHhCCeEEEEECCC-C------
Confidence 334567777666544434333345577777777777666666666544 23333332234554 56677754 3
Q ss_pred CCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEe-cCCCCCH
Q 038499 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRIS-FPYYMSN 508 (609)
Q Consensus 430 ~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls-~~~~~t~ 508 (609)
++..++.+.|.+++||.+++|..|. +.+.+||| +++++|.
T Consensus 325 ----------~~~~~l~~~l~~~~gI~v~~G~~~~-----------------------------~~~~~RIs~~g~~~t~ 365 (388)
T d2ch1a1 325 ----------VDWWKVSQYAMNNFSLEVQGGLGPT-----------------------------FGKAWRVGIMGECSTV 365 (388)
T ss_dssp ----------CCHHHHHHHHHHHHCBCCBCCCGGG-----------------------------TTTEEEEECCGGGCSH
T ss_pred ----------CCHHHHHHHHhhcCCEEEeCCCccc-----------------------------cCCEEEEcCCcCCCCH
Confidence 5788999998888899999886543 24789999 7899999
Q ss_pred HHHHHHHHHHHHHHHhcccccCCCcc
Q 038499 509 EEFEFTLEALEFIAIYGQRFLPLYNF 534 (609)
Q Consensus 509 eeid~ll~al~~v~~~~~~~~p~y~~ 534 (609)
|||++++++|+++++.. -|+|.|
T Consensus 366 edI~~ll~alke~L~~~---~~~~~~ 388 (388)
T d2ch1a1 366 QKIQFYLYGFKESLKAT---HPDYIF 388 (388)
T ss_dssp HHHHHHHHHHHHHHHHH---CTTCCC
T ss_pred HHHHHHHHHHHHHHHhh---CCccCC
Confidence 99999999999999884 477765
|
| >d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Alanine-glyoxylate aminotransferase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1.3e-29 Score=266.75 Aligned_cols=334 Identities=15% Similarity=0.164 Sum_probs=246.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCC---CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCc
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGG---QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEH 191 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~---~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h 191 (609)
.+..+.+.+.++++.+++.++.. ..+.|+||++|| ++++.++..+.. .+++|| .|++...+|
T Consensus 30 r~~~f~~~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT-~a~~~~~~~l~~------------~~~~gd--~vlv~~~~~ 94 (382)
T d2bkwa1 30 TSPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGT-LGWDIFASNFIL------------SKAPNK--NVLVVSTGT 94 (382)
T ss_dssp TSHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTT-HHHHHHHHHHSC------------TTCSCC--EEEEECSSH
T ss_pred CcHHHHHHHHHHHHHHHHHHhhhcCCCCeEEEEeCcHH-HHHHHHHHHHHH------------hcCCCC--ceEEEEech
Confidence 34567788888999999998852 223789996554 578888776521 146888 588888888
Q ss_pred cchHHHH--HHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHh--CCeE
Q 038499 192 HSNLLSW--RQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY--GGFA 266 (609)
Q Consensus 192 ~s~~~~~--~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~v 266 (609)
++....+ +..+..+..+...+ ....+.+.+++++.. ++++++++++++|.||...|+++++++|++| ++++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~tg~~~~~~~~~~~~~~~~~~~~~ 170 (382)
T d2bkwa1 95 FSDRFADCLRSYGAQVDVVRPLKIGESVPLELITEKLSQ----NSYGAVTVTHVDTSTAVLSDLKAISQAIKQTSPETFF 170 (382)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSSTTSCCCHHHHHHHHHH----SCCSEEEEESEETTTTEECCHHHHHHHHHHHCTTSEE
T ss_pred hhhhhhhhccccccccccccccCCCCccchhHHHHHhhh----ccchheeeeeccccccccccchhhhhhccccccceee
Confidence 8876544 45688877776544 456788999888875 6889999999999999999999999998887 5999
Q ss_pred EEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc-
Q 038499 267 CFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL- 345 (609)
Q Consensus 267 ivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~- 345 (609)
++|+++++|..++|+..+ ++|++++|.|||++||.|+|++++++++ +....+...++....+.. ....+.
T Consensus 171 ~vDa~qs~g~~pid~~~~---giD~~~~s~~K~l~gP~G~g~l~vs~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~ 241 (382)
T d2bkwa1 171 VVDAVCSIGCEEFEFDEW---GVDFALTASQKAIGAPAGLSISLCSSRF--MDYALNDSKNGHVHGYFS----SLRRWTP 241 (382)
T ss_dssp EEECTTTTTTSCCCTTTT---TCSEEEEESSSTTCCCSCEEEEEECHHH--HHHHTCHHHHCCCSCSTT----CHHHHHH
T ss_pred eeeccccccccccccccc---CeeEEeecccccCcCCCchhhhhccHHH--HhhhhhcccCCCcccchh----hhhhhhh
Confidence 999999999999999987 9999999999999999999999999998 445555544443311110 000111
Q ss_pred ----ccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC-CCCc-ceEEE
Q 038499 346 ----EDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTS-TKRQ-AILSF 417 (609)
Q Consensus 346 ----~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~-~~r~-~~~~f 417 (609)
.....+...+||++..+. .+++++. ...|.+.+.++.+++++++++.+....++..+.... ..+. .+++|
T Consensus 242 ~~~~~~~~~~~~~~Tp~~~~i~al~~aL~~~--~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~s~~v~~~ 319 (382)
T d2bkwa1 242 IMENYEAGKGAYFATPPVQLINSLDVALKEI--LEEGLHKRWDLHREMSDWFKDSLVNGLQLTSVSRYPSNMSAHGLTAV 319 (382)
T ss_dssp HHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--HHHCHHHHHHHHHHHHHHHHHHHHTTTCCEESSCSSSTTBCSSCEEE
T ss_pred hhhcccccccccccCCcHHHHHHHHHHHHHH--HHhhhhhhHHHHHHHHHHHHHHhhhcccccccccCchhccCCcEEEE
Confidence 111344567899887665 4455554 556999999999999999999998777777765432 2233 34454
Q ss_pred EeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcE
Q 038499 418 NIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGW 497 (609)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~ 497 (609)
... ++.++.+.|. ++||.+++|..|. ++++.
T Consensus 320 ~~~--------------------~~~~~~~~L~-~~gi~i~~G~~~~----------------------------~~~~~ 350 (382)
T d2bkwa1 320 YVA--------------------DPPDVIAFLK-SHGVVIAGGIHKD----------------------------IGPKY 350 (382)
T ss_dssp ECS--------------------CHHHHHHHHH-HTTEECBCCCCTT----------------------------TGGGE
T ss_pred cCC--------------------CHHHHHHHHH-HCCeEEECCCChh----------------------------hcCCE
Confidence 443 3678888885 5799999875432 02478
Q ss_pred EEEe-cCCCCCHHHHHHHHHHHHHHHHhccc
Q 038499 498 TRIS-FPYYMSNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 498 iRls-~~~~~t~eeid~ll~al~~v~~~~~~ 527 (609)
+||+ +++..+++++++++++|+.+.+.+++
T Consensus 351 ~Ri~~~G~~~~~e~i~~l~~~l~~i~~~L~~ 381 (382)
T d2bkwa1 351 IRIGHMGVTACNKNLPYMKNCFDLIKLALQR 381 (382)
T ss_dssp EEECCCGGGTSSTTCTHHHHHHHHHHHHTTC
T ss_pred EEEeCCcCCCCHHHHHHHHHHHHHHHHHHCc
Confidence 9999 78888899999999999988777654
|
| >d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: Glutamate decarboxylase beta, GadB species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=3.6e-28 Score=260.40 Aligned_cols=394 Identities=11% Similarity=-0.031 Sum_probs=269.7
Q ss_pred HHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHH
Q 038499 51 SEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYI 130 (609)
Q Consensus 51 ~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~i 130 (609)
.++..+.+++.+... |.+. ..+.....+..++.+.+.+.+.+.. |... ......++++..++.+++
T Consensus 37 ~~~~~~~i~d~l~~d--------g~~~-~n~asf~~t~~~~~~~~l~~~~~~~---N~~~--~~~~P~~~~lE~~~v~~l 102 (450)
T d1pmma_ 37 DDVAFQIINDELYLD--------GNAR-QNLATFCQTWDDENVHKLMDLSINK---NWID--KEEYPQSAAIDLRCVNMV 102 (450)
T ss_dssp HHHHHHHHHHHGGGS--------CCGG-GBCSCCSCCCCCHHHHHHHHHTTTC---BTTC--TTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC--------CCcc-ccccccccCCCCHHHHHHHHHHHhc---CCCC--cccCccHHHHHHHHHHHH
Confidence 566778888877422 2222 2333334456677777777765542 3332 334456889999999999
Q ss_pred HHHhCCCCCC----cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEE
Q 038499 131 KKCLGGGQED----AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVV 206 (609)
Q Consensus 131 a~~~g~~~~~----~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv 206 (609)
++++|++..+ ..++|.+||.+++..++.+.. .++.+....-.+.++ .++++...|.+...+++..|++++
T Consensus 103 a~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~-----~~~~~~~~~g~~~~~-~~~~~~~~H~s~~Kaa~~~gi~~~ 176 (450)
T d1pmma_ 103 ADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKW-----RWRKRMEAAGKPTDK-PNLVCGPVQICWHKFARYWDVELR 176 (450)
T ss_dssp HHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHH-----HHHHHHHHHTCCCSC-CEEEESSCCHHHHHHHHHTTCEEE
T ss_pred HHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHH-----HHHHHhhhcCCCCCC-ceEEecccHHHHHHHHHHcCCCce
Confidence 9999986431 357885666665555443321 122221111233444 466677889999999999999999
Q ss_pred EEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHH------HHhCCeEEEeccccCCcccc
Q 038499 207 EIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLL------HQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 207 ~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la------~~~g~~vivD~A~~~~~~~i 279 (609)
.|+.++ ++.+|+++|+++++ ++|.+|+.++++|.||.+.|+++|+++| +++|+|+|||+|++++..++
T Consensus 177 ~v~~~~~~~~~d~~~L~~~i~-----~~t~~Vv~t~gtt~tG~~dpv~~i~~i~~~~~~a~~~~i~lHVDAA~gG~~~p~ 251 (450)
T d1pmma_ 177 EIPMRPGQLFMDPKRMIEACD-----ENTIGVVPTFGVTYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPF 251 (450)
T ss_dssp ECCCBTTBCSCCHHHHHHHCC-----TTEEEEECBBSCTTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHH
T ss_pred EeeecCCCCcCcHHHHHHHhh-----hCceEEEeeeeeccCCCccccchhhHHHHHHHHHhccCcEEEeehhhccceeee
Confidence 999886 69999999999998 6899999999999999999999888775 56799999999998776654
Q ss_pred cCCCC----CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCC--CCCccCCCceEeeccccccccccccccccccc
Q 038499 280 DVRSG----QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSF--PPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 280 d~~~~----~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~--~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
+.... ...++|++++|+|||+++|.|+|++++++........ .+.+.|+.. .....
T Consensus 252 ~~~~~~~~~~~~~aDSi~~s~HK~~~~p~g~g~l~~r~~~~~~~~~~~~~~yl~~~~------------------~~~~~ 313 (450)
T d1pmma_ 252 VAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRDEEALPQELVFNVDYLGGQI------------------GTFAI 313 (450)
T ss_dssp HCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESSGGGSCGGGCEEEEETTEEE------------------EECCS
T ss_pred echhhhhhhcccceeEeecChhhccCCCCCeeEEEecChhhhhhhcccccCcCCCCc------------------CCCcc
Confidence 43321 1347999999999999999999999999775210100 111111111 11111
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC-CCCcceEEEEeccCCCCCcCCCCC
Q 038499 354 GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTS-TKRQAILSFNIHSSTINSSLGENT 432 (609)
Q Consensus 354 ~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~-~~r~~~~~f~~~~~~~~~~~~~~~ 432 (609)
.++.+...++.....+......|++.+.++..++++++.+.|+++++++++.+.+ ..++++++|...+ ..
T Consensus 314 ~~sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~~~~el~~~~~p~~~l~~V~Fr~~~-~~-------- 384 (450)
T d1pmma_ 314 NFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGRPDEGIPAVCFKLKD-GE-------- 384 (450)
T ss_dssp CCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCEEEEEECCTTTBSSEEEEEECT-TC--------
T ss_pred cCccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEeCCCCCCceEEEEEecCC-cc--------
Confidence 2222222222222222222566899999999999999999999999999986543 4678999999876 32
Q ss_pred CCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHH
Q 038499 433 KTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFE 512 (609)
Q Consensus 433 ~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid 512 (609)
...++..++.+.|.+ +|..+.... -|... . ....+|+.+...+|++++|
T Consensus 385 ----~~~~~~~~l~~~L~~-~Gw~v~~~~---~p~~~-----~------------------~~~~lRvvv~~~~t~e~~d 433 (450)
T d1pmma_ 385 ----DPGYTLYDLSERLRL-RGWQVPAFT---LGGEA-----T------------------DIVVMRIMCRRGFEMDFAE 433 (450)
T ss_dssp ----CCSSCHHHHHHHHHT-TTCBCCEEE---CCTTC-----T------------------TCEEEEEECCTTCCHHHHH
T ss_pred ----cCCCCHHHHHHHHHH-cCCeeeccC---cCCCc-----C------------------CcEEEEEEccCCCCHHHHH
Confidence 223667889999965 598775211 01000 0 2468999999999999999
Q ss_pred HHHHHHHHHHHhccc
Q 038499 513 FTLEALEFIAIYGQR 527 (609)
Q Consensus 513 ~ll~al~~v~~~~~~ 527 (609)
.|++.|+.+++.+.+
T Consensus 434 ~lv~dl~~~v~~l~~ 448 (450)
T d1pmma_ 434 LLLEDYKASLKYLSD 448 (450)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999987643
|
| >d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Pyridoxal-dependent decarboxylase domain: DOPA decarboxylase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.97 E-value=7.1e-28 Score=259.53 Aligned_cols=414 Identities=11% Similarity=0.037 Sum_probs=272.1
Q ss_pred CCCCCcchHHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHH
Q 038499 43 SVPKSISSSEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNM 122 (609)
Q Consensus 43 ~~~r~~~~~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~ 122 (609)
+.|......++.++.+++.+.-.. .+... .-|+.+-.++..+..+...+..... |+.......+...+.+
T Consensus 45 ~~P~~g~~~~~~l~~~~~~i~~~~----~~~~~--P~f~~~~~~~~~~~~~l~~~~~~~~----n~n~~~~~~sp~~t~i 114 (476)
T d1js3a_ 45 TAPQEPDTFEDILQDVEKIIMPGV----THWHS--PYFFAYFPTASSYPAMLADMLCGAI----GCIGFSWAASPACTEL 114 (476)
T ss_dssp SCCSSCCCHHHHHHHHHHTTGGGC----CCTTS--TTBCSSSCCCCCHHHHHHHHHHHHH----CCCCSSGGGCHHHHHH
T ss_pred ccCcCCCCHHHHHHHHHHHHhCCC----CCCCC--CCeeEeCCCCCCHHHHHHHHHHHhh----cccccchhhhhhHHHH
Confidence 344555568899999988774211 22222 2288887777777777665555443 3333334567778999
Q ss_pred HHHHHHHHHHHhCCCCC--------CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhc---CCCceEEEECCCCc
Q 038499 123 VHEASNYIKKCLGGGQE--------DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLR---DEERWVVFVGPHEH 191 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~--------~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~---~gd~~~Vlv~~~~h 191 (609)
..++.+++++++|.+.. ...++|++||.+++..+..+.....+.. ... ...+. ...+++|+++...|
T Consensus 115 E~~v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~-~~~-~~g~~~~~~~~~~vv~~s~~~H 192 (476)
T d1js3a_ 115 ETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRL-QAA-SPGLTQGAVLEKLVAYASDQAH 192 (476)
T ss_dssp HHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHH-HHH-STTCCHHHHHHHEEEEEETTCC
T ss_pred HHHHHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhh-ccc-ccCcccccccCceEEEeccccc
Confidence 99999999999998631 2467887788887777766543211100 000 00000 01246899999999
Q ss_pred cchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC-CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 192 HSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK-RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 192 ~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~-~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
+|...+++..|..++.|+.++++.+|+++|+++|++....+ .|.+|+.+++++.||.+.|+++|+++|++||+|+|||+
T Consensus 193 ~Si~ka~~~lGl~~~~v~~d~~~~md~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDpl~~I~~i~~~~~~wlHVDA 272 (476)
T d1js3a_ 193 SSVERAGLIGGVKLKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGPICHEEDIWLHVDA 272 (476)
T ss_dssp HHHHHHHHHHTCEEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHhcCceEEEeccCCCCCcCHHHHHHHHHHHHhcCCCcEEEeecCCCccceeeccHHHHHHHHHhcCcEEEEec
Confidence 99999999999999999999999999999999998755333 35688999999999999999999999999999999999
Q ss_pred cccCCcccccCC-CC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 271 AASGPYVEIDVR-SG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 271 A~~~~~~~id~~-~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
|+++.....+-. .. ....+|.+++++|||++.|.++|++++++.......+ ..++.+..+. ........+.
T Consensus 273 A~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~~~g~~l~r~~~~~~~~~---~~~~~~~~~~---~~~~~~~~~~ 346 (476)
T d1js3a_ 273 AYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAF---KLDPVYLKHS---HQGSGLITDY 346 (476)
T ss_dssp TTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGG---C---------------CCSCCCG
T ss_pred ccchhhhhhcchhhhhcCCcccceeeecCccccccCCcceeecccchHHHHHHH---hcChhhhccc---cccccccccc
Confidence 987654443221 11 1236799999999999999999999999754211111 0011010000 0000000000
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCc
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSS 427 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~ 427 (609)
.....+.+.+.-...+.+++... ...|++.+.++..++++++.+.|++.|+++++.+ +.+++++|...+ ..
T Consensus 347 ~~~~~~~sr~~~al~lw~~l~~~--G~~g~~~~i~~~~~lA~~l~~~l~~~~~fel~~~---p~l~iV~Fr~~~-~d--- 417 (476)
T d1js3a_ 347 RHWQLPLGRRFRSLKMWFVFRMY--GVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAE---VTLGLVCFRLKG-SD--- 417 (476)
T ss_dssp GGSSSCSCCCCTHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSC---CCSSEEEEEESS-CH---
T ss_pred cccccccchhhHHHHHHHHHHHH--hHhHHHHHHHHHHHHHHHHHHHHhcCCCeEEECC---CceEEEEEEccC-Ch---
Confidence 01111222221111223333333 5568889999999999999999999999999976 578999999876 21
Q ss_pred CCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC-CCC
Q 038499 428 LGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP-YYM 506 (609)
Q Consensus 428 ~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~-~~~ 506 (609)
.....+.+.|++. | ...++.. .+. ...++|+++. +.+
T Consensus 418 ------------~~n~~l~~~l~~~-G-----~~~~s~t---~~~---------------------g~~~lR~~i~n~~T 455 (476)
T d1js3a_ 418 ------------GLNEALLERINSA-R-----KIHLVPC---RLR---------------------GQFVLRFAICSRKV 455 (476)
T ss_dssp ------------HHHHHHHHHHHHH-T-----SCBCEEE---EET---------------------TEEEEEEECCCTTC
T ss_pred ------------HHHHHHHHHHHhc-C-----CEEEeee---eEC---------------------CEEEEEEEeCCCCC
Confidence 0123455555443 3 1222211 110 1258999985 778
Q ss_pred CHHHHHHHHHHHHHHHHhc
Q 038499 507 SNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 507 t~eeid~ll~al~~v~~~~ 525 (609)
|++||+.+++.|++++++.
T Consensus 456 t~~did~~~~~i~~~a~~l 474 (476)
T d1js3a_ 456 ESGHVRLAWEHIRGLAAEL 474 (476)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998764
|
| >d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.96 E-value=9.2e-28 Score=250.08 Aligned_cols=205 Identities=17% Similarity=0.164 Sum_probs=163.2
Q ss_pred CCCChHHHHHHHHHhhcCCccCCCCC-Cchhh-HHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 86 SGRSLRYIENYIINNVLPFYGNTHTC-DSYVG-QHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 86 ~g~~~~~v~~ai~~~~~~~~~n~~~~-~~~~~-~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
.|++++.+.+++.++-.. |...... ..... .....+.+.+++.+|+++|++ ++++| +|+++|+..++.++
T Consensus 11 ~~~l~~~a~~a~~~~~~g-~~~~~~~~~~~~~~~~~~~l~~~~~~~~A~~~g~e---~~~~t-~g~t~a~~~~~~al--- 82 (364)
T d2e7ja1 11 GGKLTEEARQALLEWGDG-YSVCDFCTTGRLDEIKTPPIHDFIHNQLPKFLGCD---VARVT-NGAREAKFAVMHSL--- 82 (364)
T ss_dssp TCCCCHHHHHHHHHC---------------------CCHHHHHHTHHHHHTTSS---EEEEE-SSHHHHHHHHHHHH---
T ss_pred CCcCCHHHHHHHHHHhcC-CchhccccccccccccChHHHHHHHHHHHHHhCcC---EEEEE-CcHHHHHHHHHHHH---
Confidence 477888888888763321 1100000 00000 011236777999999999984 67888 66777788777776
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEec
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSA 241 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~ 241 (609)
+++|| +|+++..+|+++..+++..|++++.+|.+. ++.+|+++|++++++.....+++++++++
T Consensus 83 ------------~~~gd--~Vi~~~~~h~s~~~~~~~~g~~v~~v~~~~~~~~~i~~~~l~~~i~~~~k~~~~~lv~i~~ 148 (364)
T d2e7ja1 83 ------------AKKDA--WVVMDENCHYSSYVAAERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITY 148 (364)
T ss_dssp ------------CCTTC--EEEEETTCCHHHHHHHHHTTCEEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEES
T ss_pred ------------hCCCc--EEEeecccccccchHHHhccceEEEeeeccccccccCHHHHHhhhhhhcccCCceEEEeec
Confidence 38999 799999999999999999999999999864 67899999999998654445678999999
Q ss_pred ccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 242 CSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 242 ~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
++|+||.+.|+++|+++||+||+++++|+||+.++.++++..+ ++|++++|+||++|+|+++|+++++++.
T Consensus 149 ~~n~tG~~~~l~~I~~ia~~~~i~livD~a~~~g~~~~~~~~~---g~D~~~~S~~K~~~~~g~~g~l~~~~~~ 219 (364)
T d2e7ja1 149 PDGNYGNLPDVKKIAKVCSEYDVPLLVNGAYAIGRMPVSLKEI---GADFIVGSGHKSMAASGPIGVMGMKEEW 219 (364)
T ss_dssp SCTTTCCCCCHHHHHHHHHTTTCCEEEECTTTBTTBCCCHHHH---TCSEEEEEHHHHSSCCSSCEEEEECTTT
T ss_pred CCCCCceeecchhheeccccccchhhccccchhhhhhhccccc---ccceeeeccccccCCCCCEEEEEECHHH
Confidence 9999999999999999999999999999999999999888776 7899999999999989889999999987
|
| >d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Subgroup IV putative aspartate aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.94 E-value=1.6e-24 Score=224.44 Aligned_cols=331 Identities=17% Similarity=0.069 Sum_probs=230.7
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
++.++.|.+++.+... ++.+....++++++++.++++++.+.+ .++|+|+| |.++.+++..+
T Consensus 9 ~~v~~~V~~am~~~~~----------~hr~~~f~~i~~~~~~~l~~ll~~~~~-~i~~~gsg-T~a~e~~~~nl------ 70 (348)
T d1iuga_ 9 VRLHPKALEALARPQL----------HHRTEAAREVFLKARGLLREAFRTEGE-VLILTGSG-TLAMEALVKNL------ 70 (348)
T ss_dssp CCCCHHHHHHHHSCCC----------CTTSHHHHHHHHHHHHHHHHHHTCSSE-EEEEESCH-HHHHHHHHHHH------
T ss_pred CCCCHHHHHHhcCCCC----------CCCCHHHHHHHHHHHHHHHHHhCCCCC-EEEEeCch-HHHHHHHHHhc------
Confidence 4567778777754321 234567889999999999999998765 77888655 44687776654
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchH--HHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNL--LSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~--~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
+++|++ |++....+.+.. ..++..+.++..+..+....++++++ .. .+++.++++|..|
T Consensus 71 ---------~~~g~~--vlv~~~G~f~~~~~~~a~~~~~~~~~~~~~~g~~~~~~~~----~~----~~~~~v~~~h~eT 131 (348)
T d1iuga_ 71 ---------FAPGER--VLVPVYGKFSERFYEIALEAGLVVERLDYPYGDTPRPEDV----AK----EGYAGLLLVHSET 131 (348)
T ss_dssp ---------CCTTCE--EEEEECSHHHHHHHHHHHHTTCEEEEEECCTTCCCCTTTS----CC----SSCSEEEEESEET
T ss_pred ---------cccccc--ceeecchHHHHHHHHHHHhcCcccccccccCCCccccccc----cc----cCCCeeEEEecch
Confidence 478885 555555655543 23456788888888765544554332 21 5788999999999
Q ss_pred ccccccCHHHHHHHHHHhC--CeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCC
Q 038499 245 VTGIYSDTRSIARLLHQYG--GFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP 322 (609)
Q Consensus 245 ~TG~~~dl~~I~~la~~~g--~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~ 322 (609)
.||.+.|+++|.++|++|+ +++++|++++.+..+++++.+ ++|+++++.||+++||.|+|++++++++ +++++
T Consensus 132 stG~~~~i~~i~~~~~~~~~~~l~~vDavss~g~~~i~~d~~---~iD~~~~~sqK~l~gppG~~~v~~s~~~--le~~~ 206 (348)
T d1iuga_ 132 STGALADLPALARAFKEKNPEGLVGADMVTSLLVGEVALEAM---GVDAAASGSQKGLMCPPGLGFVALSPRA--LERLK 206 (348)
T ss_dssp TTTEECCHHHHHHHHHHHCTTCEEEEECTTTBTTBCCCSGGG---TCSEEEEESSSTTCCCSCEEEEEECHHH--HHTCC
T ss_pred hhhhhccHHHHHHHHHhhhccceeechhhhcccccccccccc---cCCEEEeccccceecCCceeeeeechHH--Hhhhc
Confidence 9999999999999999985 789999999999999999886 8999999999999999999999999998 55665
Q ss_pred CCccCCCceEeecccccccccccccccccccCCChhHHHHH--HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCc
Q 038499 323 PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI--RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQN 400 (609)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~--~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~ 400 (609)
|... ..+...++...+......||++..+. .++++.. ...+.+.. ++.+...+.++..+.. .+
T Consensus 207 ~~~~-----------~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~~aL~~~--~~~~~~~~-~~~~~~~~~~~~~~~~-~g 271 (348)
T d1iuga_ 207 PRGY-----------YLDLARELKAQKEGESAWTPAINLVLAVAAVLEEV--LPRLEEHL-ALKAWQNALLYGVGEE-GG 271 (348)
T ss_dssp CCSS-----------TTCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHH--GGGHHHHH-HHHHHHHHHHHHHHHH-TT
T ss_pred cccc-----------ccchhhhhhhhccCcccccccchHHHHHHHHHHHH--HHHHhHHH-HHHHHHHHHHhhhhhh-hh
Confidence 4211 11112222233445567788876654 3444433 22333333 2323333444444443 37
Q ss_pred eEEeCCCCCCCcc-eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHH
Q 038499 401 IKILGNTSTKRQA-ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQS 479 (609)
Q Consensus 401 i~v~~~~~~~r~~-~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~ 479 (609)
+++... .+++ +++|.++. + ++...+.+.|.+ +||.+.+|..+ +
T Consensus 272 l~~~~~---~~s~~v~~~~~P~-g----------------~~~~~~~~~l~~-~gi~i~~G~~~-------l-------- 315 (348)
T d1iuga_ 272 LRPVPK---RFSPAVAAFYLPE-G----------------VPYARVKEAFAQ-RGAVIAGGQGP-------L-------- 315 (348)
T ss_dssp CEESCS---SBCTTCEEEECCT-T----------------CCHHHHHHHHHT-TTEECEECCGG-------G--------
T ss_pred hccChh---hcCCeEEEEECCC-C----------------CCHHHHHHHHHH-CCeEEEcCccc-------c--------
Confidence 877643 2343 56666654 3 577889998855 69999876421 1
Q ss_pred HHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 480 YQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 480 ~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+...+||+.-.+++.+|+++++++|+.++++
T Consensus 316 --------------~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~~ 346 (348)
T d1iuga_ 316 --------------KGKVFRLSLMGAYDRYEALGVAGMFREVLEE 346 (348)
T ss_dssp --------------TTTEEEECCCSSCCHHHHHHHHHHHHHHHHH
T ss_pred --------------CCCEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 2468999976678999999999999998875
|
| >d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Phormidium lapideum [TaxId: 32060]
Probab=99.93 E-value=1.6e-24 Score=228.28 Aligned_cols=331 Identities=13% Similarity=0.036 Sum_probs=227.4
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
-++|+.|.+++.+.+.+- . . .|....+..++++.+.+++.+..|. +++ +|++| +|+++++..++..+.
T Consensus 42 ~~~p~~v~~a~~~~~~~~--~--~-~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~-~i~it-~G~~~al~~~~~~~~--- 111 (388)
T d1j32a_ 42 FNTPKHIVEAAKAALEQG--K--T-RYGPAAGEPRLREAIAQKLQRDNGLCYGAD-NILVT-NGGKQSIFNLMLAMI--- 111 (388)
T ss_dssp SCCCHHHHHHHHHHHHTT--C--C-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHHHHHHHHHHHHHC---
T ss_pred CCCCHHHHHHHHHHHhcC--C--C-CCCCCCCCHHHHHHHHHHHHHhcccCCCCc-eEEEc-CCHHHHHHHHHHHHh---
Confidence 356788999998877531 1 1 1212222344555555566555564 454 89998 899999999988773
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecc
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSAC 242 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~ 242 (609)
++|| .|+++.+.|+.+...++..|++++.++.+. ++.+|+++|+++++ ++++++++++|
T Consensus 112 ------------~~gd--~Vlv~~P~y~~~~~~~~~~~~~~v~~~~~~~~~~~~d~~~l~~~~~-----~~~~~~~~~~P 172 (388)
T d1j32a_ 112 ------------EPGD--EVIIPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAIT-----PKTKLLVFNTP 172 (388)
T ss_dssp ------------CTTC--EEEEESSCCTHHHHHHHHTTCEEEEECCCGGGTTCCCHHHHHHHCC-----TTEEEEEEESS
T ss_pred ------------CCCC--EEEEcCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC-----CCCeEEEECCC
Confidence 7899 799999999999888888999999998765 45799999999998 68999999999
Q ss_pred cCccccccC---HHHHHHHHHHhCCeEEEeccccCCccc----ccCCCCCC--CCccEEEEcCCCCCCCC-CCcEEEEEe
Q 038499 243 SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVE----IDVRSGQT--DGYDAIFLSTHKFLGGP-GSPGILLMT 312 (609)
Q Consensus 243 sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~----id~~~~~~--~~~D~v~~S~hK~lggp-~g~G~L~~~ 312 (609)
+||||.+.+ +++|+++|++||+++|+|++++..... ..+..... .+..+++.|++|.++.| ..+|+++.+
T Consensus 173 ~NPTG~~~~~~~~~~l~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~GlRvG~~~~~ 252 (388)
T d1j32a_ 173 SNPTGMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGWRVGFLAGP 252 (388)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTTCCEEEECC
T ss_pred CCCCCcccchhhhhhhhcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchhHeEEEEEC
Confidence 999999988 556888899999999999997532211 11111100 02357888999999855 359999999
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERAL 392 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~ 392 (609)
+++. ..+... ......+++...+. ++...........+.++.+.++.++.+.
T Consensus 253 ~~~~--~~~~~~------------------------~~~~~~~~~~~~q~--a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (388)
T d1j32a_ 253 VPLV--KAATKI------------------------QGHSTSNVCTFAQY--GAIAAYENSQDCVQEMLAAFAERRRYML 304 (388)
T ss_dssp HHHH--HHHHHH------------------------HHTTTCSCCHHHHH--HHHHHHHSCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHh------------------------hhhccccccHHHHH--HHhhcccchHHHHHHHHHHHHHHHHHHH
Confidence 8873 221100 00011222233332 1112211111234566677777888899
Q ss_pred HHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhc
Q 038499 393 ERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLL 472 (609)
Q Consensus 393 ~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll 472 (609)
+.|.+++++.+..+ ..+++.|.-.+ .. ..+..++++.|.+++||.+++|..|.
T Consensus 305 ~~l~~~~g~~~~~p----~gg~~l~~~l~-~~--------------~~~~~~~~~~ll~~~gV~v~pG~~F~-------- 357 (388)
T d1j32a_ 305 DALNAMPGLECPKP----DGAFYMFPSIA-KT--------------GRSSLDFCSELLDQHQVATVPGAAFG-------- 357 (388)
T ss_dssp HHHHTCTTCBCCCC----CBTTEECCBCG-GG--------------TCCHHHHHHHHHHHHCEECEEGGGGT--------
T ss_pred HHHHhCCCCEecCC----CceEEEEEECC-CC--------------CCCHHHHHHHHHHhCCEEEEeccccC--------
Confidence 99988888887655 34555554433 11 13566788877777899999987664
Q ss_pred CCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 473 DLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 473 ~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++||+++ .++++++..++.|+++++.
T Consensus 358 ---------------------~~~~~Rls~~--~~~e~l~~al~rl~~~l~~ 386 (388)
T d1j32a_ 358 ---------------------ADDCIRLSYA--TDLDTIKRGMERLEKFLHG 386 (388)
T ss_dssp ---------------------CTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred ---------------------CCCeEEEEEe--CCHHHHHHHHHHHHHHHHH
Confidence 1489999997 5889999999999988765
|
| >d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Glutamine aminotransferase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=5.4e-25 Score=229.98 Aligned_cols=320 Identities=16% Similarity=0.055 Sum_probs=224.3
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
++|+.+.+++.+.+......+.. .| ..++|+.|+++++.+++ +|++| +|+++++..++..+.
T Consensus 38 ~~p~~i~~al~~~l~~~~~Y~~~----~G------~~elr~aiA~~~~~~~~-~Iiit-~G~~~al~~~~~~l~------ 99 (368)
T d1v2da_ 38 PPPPFLLEAVRRALGRQDQYAPP----AG------LPALREALAEEFAVEPE-SVVVT-SGATEALYVLLQSLV------ 99 (368)
T ss_dssp CCCHHHHHHHHHHTTTSCSCCCT----TC------CHHHHHHHHHHHTSCGG-GEEEE-SSHHHHHHHHHHHHC------
T ss_pred CCCHHHHHHHHHHhhcccCCCCC----cC------CHHHHHHHHhhcccCCc-ceeec-cchHHHHHHHhhccc------
Confidence 56788999998877543221211 12 45789999999999987 89998 889999999988773
Q ss_pred HHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC---CCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 168 LREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD---DGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~---~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
.+|| .|+++.+.|+.+...++..|.+++.++++. .+.+|+++++++++ +.++++++++|+|
T Consensus 100 ---------~~~d--~v~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~i~~~~p~N 163 (368)
T d1v2da_ 100 ---------GPGD--EVVVLEPFFDVYLPDAFLAGAKARLVRLDLTPEGFRLDLSALEKALT-----PRTRALLLNTPMN 163 (368)
T ss_dssp ---------CTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECEEETTEEECCHHHHHTTCC-----TTEEEEEEESSCT
T ss_pred ---------cccc--cccccCCcchhhhhHHHhcCCccceeccccccccccCCHHHHHHhhc-----cCceEEEEcCCCC
Confidence 7888 699999999999999999999999887752 45799999999998 5789999999999
Q ss_pred ccccccC---HHHHHHHHHHhCCeEEEeccccCCcccccCCCC--CCCCccEEEEcCCCCCCCCC-CcEEEEEechhhcc
Q 038499 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVEIDVRSG--QTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQL 318 (609)
Q Consensus 245 ~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~id~~~~--~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l 318 (609)
|||.+.+ +++|+++|++||+++++|+++............ .......++.+++|.++.|+ .+|+++.++++.
T Consensus 164 PtG~~~~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sk~~~~~G~R~g~~~~~~~~~-- 241 (368)
T d1v2da_ 164 PTGLVFGERELEAIARLARAHDLFLISDEVYDELYYGERPRRLREFAPERTFTVGSAGKRLEATGYRVGWIVGPKEFM-- 241 (368)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCHHHHCTTTEEEEEEHHHHTTCGGGCCEEEECCTTTH--
T ss_pred cccccCCHHHHHHHHHHHHHcCCeeeechhhhhhcccccccccccccccccceeeccccccccccccccccccccccc--
Confidence 9999987 677889999999999999987654333222111 01133566677777776553 489999988872
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
+.+... ......++....+.. .+++... ......+.++++.++.++++.+.|++
T Consensus 242 ~~~~~~------------------------~~~~~~~~~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~l~~~l~~ 296 (368)
T d1v2da_ 242 PRLAGM------------------------RQWTSFSAPTPLQAGVAEALKLA-RREGFYEALREGYRRRRDLLAGGLRA 296 (368)
T ss_dssp HHHHHH------------------------HHHHTSSCCHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhh------------------------hhccccccccccccccccccccc-cchhhHHHHHHHHHHhhhhhhhhHHh
Confidence 221100 111122333344332 2232222 12234567777788888899999988
Q ss_pred CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChh
Q 038499 398 NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEA 477 (609)
Q Consensus 398 ~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~ 477 (609)
+ |+++..+. .+++.|.-.+ + .+ ..++| ++.||.+++|+.|....
T Consensus 297 ~-g~~~~~p~----g~~~~~~~l~-~----------------~~---~~~ll-~~~gI~v~pg~~F~~~~---------- 340 (368)
T d1v2da_ 297 M-GLRVYVPE----GTYFLMAELP-G----------------WD---AFRLV-EEARVALIPASAFYLED---------- 340 (368)
T ss_dssp T-TCCEECCS----BSSEEEEECT-T----------------CC---HHHHH-HHTCEECEEGGGGCSSS----------
T ss_pred c-CcEEecCC----ceeEEEEeCC-c----------------cH---HHHHH-HhCCEEEEechhhCCCC----------
Confidence 7 88887663 3455555444 2 12 33445 45799999998775210
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 478 QSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
..++++|||++ .++++++..++.|+++
T Consensus 341 ---------------~~~~~iRis~~--~~~e~i~~ai~rL~~~ 367 (368)
T d1v2da_ 341 ---------------PPKDLFRFAFC--KTEEELHLALERLGRV 367 (368)
T ss_dssp ---------------CCTTEEEEECC--SCHHHHHHHHHHHHHH
T ss_pred ---------------CCCCEEEEEec--CCHHHHHHHHHHHHHh
Confidence 02589999986 5899999999999876
|
| >d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.93 E-value=1.3e-24 Score=228.70 Aligned_cols=330 Identities=15% Similarity=0.069 Sum_probs=217.7
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHh----CC--CCCCcEEEeCChHHHHHHHHHHHhc
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCL----GG--GQEDAMIFCGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~----g~--~~~~~vift~sGttaal~~l~~~l~ 161 (609)
++|+.|.+++.+.+..- .+ .|....+ ..++|+.|++++ +. .+.++|++| +|+++++..++.++
T Consensus 38 ~~p~~v~~~~~~a~~~~----~~-~Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~~~i~~t-~G~~~~l~~~~~~l- 106 (388)
T d1gdea_ 38 DTPQHIKEYAKEALDKG----LT-HYGPNIG----LLELREAIAEKLKKQNGIEADPKTEIMVL-LGANQAFLMGLSAF- 106 (388)
T ss_dssp CCCHHHHHHHHHHHHTT----CC-SCCCTTC----CHHHHHHHHHHHHHHHCCCCCTTTSEEEE-SSTTHHHHHHHTTT-
T ss_pred CCCHHHHHHHHHHHhcC----cc-CCCCCcC----CHHHHHHHHHHHHhhccccCCChheeeec-cCcchHHHHHHHHh-
Confidence 56788989988877541 11 1111222 234455555543 32 233478888 88888998887776
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEE
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSF 239 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~ 239 (609)
+++|| .|++..+.|+.+...++..|++++.+++++ ++.+|+++|+++++ ++++++++
T Consensus 107 --------------~~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~i~~ 165 (388)
T d1gdea_ 107 --------------LKDGE--EVLIPTPAFVSYAPAVILAGGKPVEVPTYEEDEFRLNVDELKKYVT-----DKTRALII 165 (388)
T ss_dssp --------------CCTTC--EEEEEESCCTTHHHHHHHHTCEEEEEECCGGGTTCCCHHHHHHHCC-----TTEEEEEE
T ss_pred --------------cCCCC--EEEECCCCcHHHHHHHHHcCCEEEEeecccccCCCCCHHHHHHhCc-----cCCeEEEE
Confidence 48899 699999999999888999999999999865 45799999999998 68999999
Q ss_pred ecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCCCC-CCccEEEEcCCCCCCCC-CCcEEEE
Q 038499 240 SACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQT-DGYDAIFLSTHKFLGGP-GSPGILL 310 (609)
Q Consensus 240 s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~-~~~D~v~~S~hK~lggp-~g~G~L~ 310 (609)
++|+||||.+.+ +++|+++|++|++++|+|++++.... ...+..... .+..+++.|++|.+|.| ..+|+++
T Consensus 166 ~~P~NPtG~~~s~~~~~~l~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~GlR~G~ii 245 (388)
T d1gdea_ 166 NSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGWRLGFVA 245 (388)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGGCCEEEE
T ss_pred CCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccccEEEEE
Confidence 999999999987 56688899999999999999763211 111111111 12357888999999755 3599999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHH-HHHHHHHHhcCHHHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRA-ALAFWVKEYIGHEVIKKQEETYIE 389 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~a-al~~~~~~~~g~~~i~~~~~~l~~ 389 (609)
+++++. ..+... ......+++...+.+.+ ++.-. ......+...++..+...
T Consensus 246 ~~~~~~--~~~~~~------------------------~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~ 298 (388)
T d1gdea_ 246 APSWII--ERMVKF------------------------QMYNATCPVTFIQYAAAKALKDE-RSWKAVEEMRKEYDRRRK 298 (388)
T ss_dssp CCHHHH--HHHHHH------------------------HHTTTCSCCHHHHHHHHHHHTCH-HHHHHHHHHHHHHHHHHH
T ss_pred eeccch--hhhhhc------------------------cccccccccccchhhHHHHHhhc-cchhHHHHHHHHHHHhhh
Confidence 998772 221100 11111223333333221 11100 000112344455555666
Q ss_pred HHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 390 RALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 390 ~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
.+.+.|... ++....+ ..+++.|.-.+ .. ..+..++++.|.++.||.+++|..|...
T Consensus 299 ~~~~~l~~~-~~~~~~p----~gg~fl~~~l~-~~--------------~~~~~~~~~~ll~e~gV~v~PG~~F~~~--- 355 (388)
T d1gdea_ 299 LVWKRLNEM-GLPTVKP----KGAFYIFPRIR-DT--------------GLTSKKFSELMLKEARVAVVPGSAFGKA--- 355 (388)
T ss_dssp HHHHHHHHT-TCCCCCC----CBTTEECCBCG-GG--------------TCCHHHHHHHHHHHTCEECEEGGGGCGG---
T ss_pred hhhhhhhhc-cccccCC----CceEEEEEECC-CC--------------CCCHHHHHHHHHHhCCEEEEechhhCCC---
Confidence 677777654 4444333 34555554433 11 1467788888777789999999877521
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++|+|||++ .++++++..++.|++++++-
T Consensus 356 ------------------------~~~~iRis~~--~~~e~l~~al~rL~~~l~e~ 385 (388)
T d1gdea_ 356 ------------------------GEGYVRISYA--TAYEKLEEAMDRMERVLKER 385 (388)
T ss_dssp ------------------------GTTBEEEECC--SCHHHHHHHHHHHHHHHHHT
T ss_pred ------------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHHhc
Confidence 1589999997 58899999999999988763
|
| >d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]
Probab=99.93 E-value=5.9e-25 Score=229.01 Aligned_cols=339 Identities=11% Similarity=0.002 Sum_probs=221.9
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCC---CchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTC---DSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~---~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
.+.|+.|+++|.+.+..+. |.+.+ .++.+..+.++++++|+.|++++|++++..|+|+++++++++..+...+
T Consensus 12 ~~vp~~V~eam~~~~~~~~-~~~~~~~~~sHRs~ef~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l--- 87 (361)
T d2c0ra1 12 AALPLEVLERAQAEFVDYQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF--- 87 (361)
T ss_dssp CCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH---
T ss_pred cCCCHHHHHHHHHHHhhhc-ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc---
Confidence 3568999999999887754 33332 1235677899999999999999999866588898666676665554443
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHHHH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEE
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSF 239 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~ 239 (609)
+.+++. +++. .|.++...| ...|.+++.+..+....++++++++.+.. .+ +
T Consensus 88 ------------~~~~~~--~l~~--~~g~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~ 142 (361)
T d2c0ra1 88 ------------LKEGQT--ANYV--MTGSWASKALKEAKLIGDTHVAASSEASNYMTLPKLQEIQLQ-----DN----A 142 (361)
T ss_dssp ------------CCTTCE--EEEE--ECSHHHHHHHHHHHHHSCEEEEEECGGGTTCSCCCGGGCCCC-----TT----E
T ss_pred ------------ccCCCc--eEEE--eechhhhhhhhhhhhcCceeeeeccccccccchhhhhhhccc-----Cc----c
Confidence 356663 4432 244444444 34689999998887777888888776652 22 3
Q ss_pred ecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccC
Q 038499 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLG 319 (609)
Q Consensus 240 s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~ 319 (609)
.+++|.||.+.|+++|.++||++|+++++|+++++|+.++|+.++ |+.++++||+++.|++.++++..+.+ .
T Consensus 143 ~~v~~~tg~~~~~~~i~~~~~~~~al~~vDavss~g~~~id~~~~-----di~~~s~~k~~~~~~~~~~~~~~~~~---~ 214 (361)
T d2c0ra1 143 AYLHLTSNETIEGAQFKAFPDTGSVPLIGDMSSDILSRPFDLNQF-----GLVYAGAQKNLGPSGVTVVIVREDLV---A 214 (361)
T ss_dssp EEEEEESEETTTTEECSSCCCCTTSCEEEECTTTTTSSCCCGGGC-----SEEEEETTTTTCCSSCEEEEEEGGGS---S
T ss_pred eEEEEecccceecceEEEeeccCCceEEEEeeccccccccccccc-----eeEEEecccccccccCcEEEEEhHHh---h
Confidence 456789999999999999999999999999999999999999764 77778889999877766666655555 2
Q ss_pred CCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Q 038499 320 SFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ 399 (609)
Q Consensus 320 ~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p 399 (609)
...+....+.. ...+.........+++.....+..+.+... ...+...+..+.+..+..+...+....
T Consensus 215 ~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (361)
T d2c0ra1 215 ESPKHLPTMLR-----------YDTYVKNNSLYNTPPSFGIYMVNEVLKWIE-ERGGLEGVQQANRKKASLIYDAIDQSG 282 (361)
T ss_dssp SCCTTSCGGGC-----------HHHHHHTTTCSSCCCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred hCccccccccc-----------cccccccccccccccceeeehhhhHHHhhh-hccchHHHHHHHHHHHHHhhhhhhhcc
Confidence 22221111100 001111112222233333333333333332 233344455555555555555554432
Q ss_pred -ceEEeCCCCCCCc-ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChh
Q 038499 400 -NIKILGNTSTKRQ-AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEA 477 (609)
Q Consensus 400 -~i~v~~~~~~~r~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~ 477 (609)
...+.... ..|+ .+++|.+.+ + .+..++.+.|. ++||.+++|..|.
T Consensus 283 ~~~~~~~~~-~~rS~~~~~~~~~~-~----------------~~~~~~~~~L~-~~GI~~~~G~~~~------------- 330 (361)
T d2c0ra1 283 GFYRGCVDV-DSRSDMNITFRLAS-E----------------ELEKEFVKASE-QEGFVGLKGHRSV------------- 330 (361)
T ss_dssp TSSEESSCG-GGBCSSEEEEECSC-H----------------HHHHHHHHHHH-HTTEESCBCCTTT-------------
T ss_pred cccccCCCh-hhccceEEEEECCC-c----------------ccHHHHHHHHH-HCCCEEecCCCcC-------------
Confidence 33333332 3344 456666654 2 35678888885 5799999874332
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 478 QSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+.+|||+..++|.|||++|+++|++..++
T Consensus 331 ------------------g~~RIs~~~~~~~edv~~Lv~~l~~~~~~ 359 (361)
T d2c0ra1 331 ------------------GGLRASIYNAVPYESCEALVQFMEHFKRS 359 (361)
T ss_dssp ------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred ------------------CeEEEEecCCCCHHHHHHHHHHHHHHHHh
Confidence 34899999999999999999999987654
|
| >d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.6e-23 Score=217.77 Aligned_cols=289 Identities=16% Similarity=0.060 Sum_probs=196.7
Q ss_pred HHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc
Q 038499 124 HEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA 203 (609)
Q Consensus 124 ~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (609)
.++|+++++++|.+++ +|++| +|++++|..+++++. .|||. +|+++++.|+.+...++..|+
T Consensus 59 ~~Lr~~ia~~~gv~pe-~I~it-~Gs~eai~~~~~~~~---------------~pgd~-~Vl~~~P~y~~~~~~~~~~g~ 120 (354)
T d1fg7a_ 59 KAVIENYAQYAGVKPE-QVLVS-RGADEGIELLIRAFC---------------EPGKD-AILYCPPTYGMYSVSAETIGV 120 (354)
T ss_dssp HHHHHHHHHHHTSCGG-GEEEE-SHHHHHHHHHHHHHC---------------CTTTC-EEEECSSSCTHHHHHHHHHTC
T ss_pred HHHHHHHHHHhCCChH-Heeec-cCchHHHHHHHHHhh---------------ccccc-cccccccccccchhhhhccCc
Confidence 4789999999999987 99998 999999999999874 78875 688889999999888999999
Q ss_pred eEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHH--HHhCCeEEEeccccCCcccccC
Q 038499 204 EVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLL--HQYGGFACFDFAASGPYVEIDV 281 (609)
Q Consensus 204 ~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la--~~~g~~vivD~A~~~~~~~id~ 281 (609)
+++.++.++++.+|+++++.++. +++++++++++||||.+.+.+++..++ .+++.++++|+++.-.......
T Consensus 121 ~v~~~~~~~~~~~d~~~l~~~~~------~~~~v~~~~pnNPtG~~~~~~~~~~~~~~~~~~~~~iidd~~~~f~~~~~~ 194 (354)
T d1fg7a_ 121 ECRTVPTLDNWQLDLQGISDKLD------GVKVVYVCSPNNPTGQLINPQDFRTLLELTRGKAIVVADEAYIEFCPQASL 194 (354)
T ss_dssp EEEECCCCTTSCCCHHHHHTSCT------TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTTCEEEEECTTGGGSGGGCS
T ss_pred eeeccccccccccchhhhhhccc------ccceeeccCCCccceeEeeecccccccccccccccccccccchhhcccccc
Confidence 99999998888999999987654 689999999999999998865543332 2357778888775421111111
Q ss_pred CCC-CCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhH
Q 038499 282 RSG-QTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV 359 (609)
Q Consensus 282 ~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i 359 (609)
... ......+++.|++|.+|-| .++|++++++++. +.+... +........
T Consensus 195 ~~~~~~~~~~iv~~S~SK~~~laGlRiGy~i~~~~~i--~~l~~~--------------------------~~~~~~~~~ 246 (354)
T d1fg7a_ 195 AGWLAEYPHLAILRTLSKAFALAGLRCGFTLANEEVI--NLLMKV--------------------------IAPYPLSTP 246 (354)
T ss_dssp GGGTTTCTTEEEEEESSSTTCCGGGCCEEEEECHHHH--HHHHHH--------------------------SCSSCSCHH
T ss_pred chhhcccccceEEeCCccccCCCccccccccccchhh--hhhhhh--------------------------cCccchhhH
Confidence 111 1123356778999999844 4599999998873 222100 000011111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCC
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKP 439 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
.+.. ++..+............++..+.++++.+.+.+++++....+. .++|.|.-.+
T Consensus 247 ~~~~-a~~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~p~----~~~f~~~~~~------------------ 303 (354)
T d1fg7a_ 247 VADI-AAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQVFDS----ETNYILARFK------------------ 303 (354)
T ss_dssp HHHH-HHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEECCC----SSSEEEEEET------------------
T ss_pred HHHH-HHHHHhhhccccccccchhhhhHHHHHHHHHHhCCCcceeCCC----CceEEEEeCC------------------
Confidence 1211 1111111111122333455666778888888888887654442 2344444333
Q ss_pred CChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 440 LHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 440 l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
+..++.+.|.+ .||.+|++..+. + .++|+|||++ |++|+++++++|+
T Consensus 304 -~~~~~~~~L~~-~gIlvr~~~~~~--------~--------------------~~~~lRisig---t~ee~~~~l~aLk 350 (354)
T d1fg7a_ 304 -ASSAVFKSLWD-QGIILRDQNKQP--------S--------------------LSGCLRITVG---TREESQRVIDALR 350 (354)
T ss_dssp -THHHHHHHHHH-TTEECEECTTST--------T--------------------CTTEEEEECC---CHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHH-CCcEEecCCCCC--------C--------------------CCCEEEEEeC---CHHHHHHHHHHHh
Confidence 36788888876 599999654332 1 1589999997 8999999999997
Q ss_pred H
Q 038499 520 F 520 (609)
Q Consensus 520 ~ 520 (609)
.
T Consensus 351 a 351 (354)
T d1fg7a_ 351 A 351 (354)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Escherichia coli [TaxId: 562]
Probab=99.92 E-value=1.9e-24 Score=223.84 Aligned_cols=339 Identities=13% Similarity=0.010 Sum_probs=221.6
Q ss_pred CChHHHHHHHHHhhcCCccCCCCC---CchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTC---DSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~---~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
..|+.|++++.+.+..+. +.+.+ .++.+..+.++++++|+.|++++|+++++.|+|+++++++++..+...+
T Consensus 11 ~~p~~Vl~a~~~~~~~~~-~~~~~~~~~sHRs~ef~~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~---- 85 (360)
T d1bjna_ 11 MLPAEVLKQAQQELRDWN-GLGTSVMEVSHRGKEFIQVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNI---- 85 (360)
T ss_dssp CCCHHHHHHHHHTSSSGG-GSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH----
T ss_pred CCCHHHHHHHHHHHhhhc-ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcc----
Confidence 458999999999887654 33332 1335677889999999999999999876578888555555444433322
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchHH--HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecc
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLL--SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSAC 242 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~ 242 (609)
+.+++ .+++....+..... .++..|..++.+..+.++..+.+.++..+. .+++++++.++
T Consensus 86 -----------~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~v~v~~~ 147 (360)
T d1bjna_ 86 -----------LGDKT--TADYVDAGYWAASAIKEAKKYCTPNVFDAKVTVDGLRAVKPMREWQ-----LSDNAAYMHYC 147 (360)
T ss_dssp -----------CTTCC--EEEEEESSHHHHHHHHHHTTTSEEEEEECEEEETTEEEECCGGGCC-----CCSSCSCEEEC
T ss_pred -----------ccccc--ccceecccchhhhhHHHHhhcCccceeeccccCCCcchhhhhhhhc-----cCCceeEEEec
Confidence 34555 45554433332211 123356666666555555556555555555 67888899999
Q ss_pred cCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCC
Q 038499 243 SNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP 322 (609)
Q Consensus 243 sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~ 322 (609)
+|.||...|++++. ++.+++++++|++++.+..++|+. ++|+++++.||++++|.++|+++.++.. .....
T Consensus 148 ~~~t~~~~~~~~i~--~~~~~~~v~vDa~~~~~~~~vd~~-----~~dv~~~ss~k~~~~~~~~~~~~~~~~~--~~~~~ 218 (360)
T d1bjna_ 148 PNETIDGIAIDETP--DFGADVVVAADFSSTILSRPIDVS-----RYGVIYAGAQKNIGPAGLTIVIVREDLL--GKANI 218 (360)
T ss_dssp SEETTTTEECCCCC--CCCTTCCEEEECTTTTTSSCCCGG-----GCSEEEEETTTTTSSTTCEEEEEEGGGC--SCCCT
T ss_pred ccccccCcccccee--cccccceeeeeeeccccceeeeec-----cceeEEEEcccccccCCCceeEeeehhh--hhccc
Confidence 99999999887764 567899999999999998888875 4699999999999999988888888776 22222
Q ss_pred CCccCCCceEeecccccccccccccccccccCCCh---hHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC
Q 038499 323 PSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP---QVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ 399 (609)
Q Consensus 323 p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp---~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p 399 (609)
....++ .+...........++ .......+++ ......+.+...++.++......+.+....
T Consensus 219 ~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (360)
T d1bjna_ 219 ACPSIL--------------DYSILNDNGSMFNTPPTFAWYLSGLVFK--WLKANGGVAEMDKINQQKAELLYGVIDNSD 282 (360)
T ss_dssp TSCGGG--------------CHHHHHHTTTCSSCCCHHHHHHHHHHHH--HHHHTTHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred cCCcch--------------hhHHHHhhhhhccccccchHHHHHHHHH--HHhhhhhHHHHHHHHHHHHHHHHHhhhccc
Confidence 211110 011111111112222 2222222222 222344556666666666666666666554
Q ss_pred ceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHH
Q 038499 400 NIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQS 479 (609)
Q Consensus 400 ~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~ 479 (609)
...+..+....+..+++|.+.+ + .+...+.+.|. ++||.++.|..|.
T Consensus 283 ~~~~~~~~~~rs~~v~~f~~~~-~----------------~~~~~~~~~l~-~~Gi~~~~G~~~~--------------- 329 (360)
T d1bjna_ 283 FYRNDVAKRNRSRMNVPFQLAD-S----------------ALDKLFLEESF-AAGLHALKGHRVV--------------- 329 (360)
T ss_dssp SEECCBCGGGBCSSEEEEEESS-G----------------GGHHHHHHHHH-HTTEECCBCCTTT---------------
T ss_pred cccccCCcccccceEEEEEcCC-c----------------ccHHHHHHHHH-HCCCEeecCCCcc---------------
Confidence 4443333323345678888865 3 46778888885 5799998774333
Q ss_pred HHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 480 YQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 480 ~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
|.+|+|+..++|+|||++++++|+++.+
T Consensus 330 ----------------g~~Ris~~~~~t~edV~~li~~l~e~~~ 357 (360)
T d1bjna_ 330 ----------------GGMRASIYNAMPLEGVKALTDFMVEFER 357 (360)
T ss_dssp ----------------CSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred ----------------CeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 3489999999999999999999999764
|
| >d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.91 E-value=4.9e-24 Score=228.39 Aligned_cols=338 Identities=11% Similarity=0.038 Sum_probs=217.6
Q ss_pred HHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH
Q 038499 119 TTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW 198 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~ 198 (609)
...+..++.+++++++|.+.....+++++||.+++..++.++. .+ ..+++ +|+++..+|++...++
T Consensus 92 ~~~le~~~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~--------~~----~~~~~--~vi~~~~~H~s~~~a~ 157 (445)
T d3bc8a1 92 LNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLR--------HK----RPKAK--YIIWPRIDQKSCFKSM 157 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHH--------HH----CTTCC--EEEEECCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcccCccccccchHHHHHHHHHHHH--------Hh----CCCCC--EEEEcCcccHHHHHHH
Confidence 4567778889999999998765677886666555554444321 11 12333 8999999999999999
Q ss_pred HHcCceEEEEe---cCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 199 RQSLAEVVEIG---LDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 199 ~~~G~~vv~v~---~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
+..|++++.|. .++++.+|+++|+++|++... +++.+|++++++|++|.+.|+++|+++||+||+++|+|+|++.+
T Consensus 158 ~~~g~~~~~v~~~~~~~~~~id~~~l~~~i~~~~~-~~~~~v~~~~~~~~~G~~~~~~~i~~~~~~~~~~l~vD~a~~~~ 236 (445)
T d3bc8a1 158 VTAGFEPVVIENVLEGDELRTDLKAVEAKIQELGP-EHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQ 236 (445)
T ss_dssp HHTTCEEEEECCEEETTEEECCHHHHHHHHHHHCG-GGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTT
T ss_pred HHcCCeeEEEEeeccCcccccCHHHHHHHHHhccc-cCeEEEEEeCCCCCCeeehhHHHHHHHHHHhCCcEEEEccchhh
Confidence 99999988885 355789999999999975321 35789999999999999999999999999999999999998876
Q ss_pred cccccC---CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 276 YVEIDV---RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 276 ~~~id~---~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
.....- ......++|++++|+||++++|.|.|++++++... ++.+.....+ .
T Consensus 237 ~~~~~~~~~~~~~~~~vd~~~~s~hK~~~~p~g~~~l~~~~~~~-~~~~~~~~~~------------------------~ 291 (445)
T d3bc8a1 237 SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPF-IQDISKMYPG------------------------R 291 (445)
T ss_dssp CHHHHHHHHHHHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHH-HHHHHHHSCS------------------------C
T ss_pred hhhccccchhccCcCCcceEEecCccccccCCCCceeeeCChHH-HHHHHHHHhh------------------------c
Confidence 432110 00111368999999999999999999999987652 1111111111 1
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC---ceEEeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 353 SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ---NIKILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 353 ~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p---~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
..+++.+... +++... ...+...+..+..++.+++.+.|+++. +..++... ..++..+.... ...
T Consensus 292 ~~~~~~~~~~--~~~~~~--g~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~l~~~---~~~~~~~~~l~-~~~---- 359 (445)
T d3bc8a1 292 ASASPSLDVL--ITLLSL--GCSGYRKLLKERKEMFVYLSTQLKKLAEAHNERLLQTP---HNPISLAMTLK-TID---- 359 (445)
T ss_dssp BCSHHHHHHH--HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCCT---TCSSEEEEECT-TTS----
T ss_pred ccCcchHHHH--HHHHHH--hhhcchhhHHHHHHHHHHHHHHHHHHHhhcCceeecCC---CCCcceEEEee-ecc----
Confidence 1122222221 222222 234556666677777777777776532 44444432 22222222221 100
Q ss_pred CCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCCh---hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCC
Q 038499 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGP---YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYM 506 (609)
Q Consensus 430 ~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p---~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~ 506 (609)
........++...|.+ +||.....+.+... .++.+.+.+.. .+.....++|++++.++
T Consensus 360 ------~~~~~~~~~l~~~L~~-~gI~~~~~~~~~~~~~i~~~~~~~~g~~------------~~~~~~~~i~i~~~~~~ 420 (445)
T d3bc8a1 360 ------GHHDKAVTQLGSMLFT-RQVSGARAVPLGNVQTVSGHTFRGFMSH------------ADNYPCAYLNAAAAIGM 420 (445)
T ss_dssp ------SSSSCHHHHHHHHHHH-TTCCSCEEECSCCEEEETTEEEETTTTT------------SSCCSSCEEEEECCTTC
T ss_pred ------ccCCCCHHHHHHHHHH-cCCCcceeeccccccchhhhhhhhcCCC------------CccCCCCeEEEeCcCCC
Confidence 1112345567777754 58865544433321 12222222210 11223477999999999
Q ss_pred CHHHHHHHHHHHHHHHHhccc
Q 038499 507 SNEEFEFTLEALEFIAIYGQR 527 (609)
Q Consensus 507 t~eeid~ll~al~~v~~~~~~ 527 (609)
|++|||+++++|+++++..++
T Consensus 421 T~eDID~~v~~L~kilk~~rk 441 (445)
T d3bc8a1 421 KMQDVDLFIKRLDKCLNIVRK 441 (445)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999987654
|
| >d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SepSecS-like domain: Selenocysteinyl-tRNA synthase (SepSecS) species: Methanococcus maripaludis [TaxId: 39152]
Probab=99.91 E-value=1.1e-23 Score=225.12 Aligned_cols=312 Identities=15% Similarity=0.031 Sum_probs=215.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR 199 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (609)
..+..+...++.+++|.+.. ..++.+|+++++..++.++. . ..+++ +|+++...|+|+...++
T Consensus 112 ~~~~~~~~~~~~~~~g~~~~--~~~~~~~t~~~~~~~l~a~r--------~-----~~~~~--~vi~s~~~H~s~~k~~~ 174 (434)
T d2z67a1 112 YALTNKILESFFKQLGLNVH--AIATPISTGMSISLCLSAAR--------K-----KYGSN--VVIYPYASHKSPIKAVS 174 (434)
T ss_dssp HHHHHHHHHHHHHHTTCCCE--EEEESSCHHHHHHHHHHHHH--------H-----HHCCC--EEEEECCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcc--eeecCcHHHHHHHHHHHHHH--------H-----hhcCc--eEEEeccCCHHHHHHHH
Confidence 45556666778888998754 34444566655555544431 1 13455 79999999999999999
Q ss_pred HcCceEEEEec---CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 200 QSLAEVVEIGL---DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 200 ~~G~~vv~v~~---~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
..|++++.|+. +.++.+|+++|+++|+++...+++.+|+++++++++|.+.|+++|+++||+||+++++|+|++.+.
T Consensus 175 ~~g~~~~~v~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~l~~i~~~~~~~~~~l~vD~a~g~~~ 254 (434)
T d2z67a1 175 FVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQN 254 (434)
T ss_dssp HTTCEEEEECCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTC
T ss_pred HhCCcceEEEeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccCHHHHHHHHHHhCCeEEEeccchhhh
Confidence 99999888763 446789999999999876555678899999999999999999999999999999999999987643
Q ss_pred cc-----ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccc
Q 038499 277 VE-----IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEER 351 (609)
Q Consensus 277 ~~-----id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r 351 (609)
.. ..... .++|++++|+||++++|.|.|+++++++.. ++.+.+...+.
T Consensus 255 ~~~~~~~~~~~~---~~~D~~~~s~hK~l~~~~g~~~~~~~~~~~-~~~~~~~~~~~----------------------- 307 (434)
T d2z67a1 255 NYYLEKLKKAFK---YRVDAVVSSSDKNLLTPIGGGLVYSTDAEF-IKEISLSYPGR----------------------- 307 (434)
T ss_dssp HHHHHHHHHHHT---SCCSEEEEEHHHHHCCCSSCEEEEESCHHH-HHHHHTTSCSC-----------------------
T ss_pred hhcccccccccc---CCcceEEEcCccccccCCCccccccCcHHH-HHHHHhhcccc-----------------------
Confidence 21 11111 378999999999999999999999887652 22222211111
Q ss_pred ccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC---CceEEeCCCCCCCcceEEEEeccCCCCCcC
Q 038499 352 ESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN---QNIKILGNTSTKRQAILSFNIHSSTINSSL 428 (609)
Q Consensus 352 ~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~---p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~ 428 (609)
..+.+.... .+++..+ ...|.+.+.++..++++++.+.|+++ .+..++... .++..+....
T Consensus 308 --~~~~~~~~~-~a~l~~~--~~~g~~~~~~~~~~~a~~l~~~L~~l~~~~g~~ll~~~----~~~~~~~~~~------- 371 (434)
T d2z67a1 308 --ASATPVVNT-LVSLLSM--GSKNYLELVKNQKNSKKLLDELLNDLSKKTGGKFLDVE----SPIASCISVN------- 371 (434)
T ss_dssp --BCSHHHHHH-HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCBCCCC----CSSEEEEECS-------
T ss_pred --cccchHHHH-HHHHHHH--HHhcchhHHHHHHHHHHHHHHHHHHhhhhcCceecCCC----CCceeeeecC-------
Confidence 011122221 2222332 34467778888888888888888764 355565442 2333333333
Q ss_pred CCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCH
Q 038499 429 GENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSN 508 (609)
Q Consensus 429 ~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ 508 (609)
.+...+...|.+ .||..........+.++...+.. ...++|++++.++|+
T Consensus 372 -----------~~~~~l~~~L~~-~gI~g~~v~~~l~~~g~~~~~~~------------------~~~~l~~~~s~~~T~ 421 (434)
T d2z67a1 372 -----------SDPVEIAAKLYN-LRVTGPRGIKKTDHFGNCYLGTY------------------THDYIVMNAAIGVRT 421 (434)
T ss_dssp -----------SCHHHHHHHHHH-TTEESCEEECTTCHHHHTCSSCC------------------SCCEEEEECCTTCCH
T ss_pred -----------CCHHHHHHHHHH-cCCeeeehhhhccccCeeeeccc------------------CCCeEEEecCCCCCH
Confidence 357788888866 59865543333334454433332 358899999999999
Q ss_pred HHHHHHHHHHHHH
Q 038499 509 EEFEFTLEALEFI 521 (609)
Q Consensus 509 eeid~ll~al~~v 521 (609)
||||+++++|+++
T Consensus 422 edID~~i~~L~kI 434 (434)
T d2z67a1 422 EDIVNSVSKLEKI 434 (434)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC
Confidence 9999999999864
|
| >d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Phosphoserine aminotransferase, PSAT species: Bacillus alcalophilus [TaxId: 1445]
Probab=99.91 E-value=2.7e-24 Score=223.45 Aligned_cols=349 Identities=11% Similarity=0.004 Sum_probs=214.4
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCC---chhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHH
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFYGNTHTCD---SYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIK 154 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~---~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~ 154 (609)
.||.-+.+..+.|+.|++++.+.+..++ +.+.+. ++.+....++++++|+.|++++|++++..|+|+ +||+.+..
T Consensus 3 ~~~nF~pGP~~~p~~V~~a~~~~~~~~~-~~~~~~~~~sHRs~~~~~~~~~~r~~l~~l~~~~~~~~i~~~-~gt~~~~~ 80 (360)
T d1w23a_ 3 QVFNFNAGPSALPKPALERAQKELLNFN-DTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFL-QGGASLQF 80 (360)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEE-SSHHHHHH
T ss_pred ceeEeCCCCcCCCHHHHHHHHHHHHhhc-ccCccccccCcCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEe-CCcHHHHH
Confidence 4565555667789999999999887653 333321 234567788999999999999999876456676 67765554
Q ss_pred HHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH--HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 155 RLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS--WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 155 ~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
.++.... +.+++ .+++....|++.... +...+..++...........+++++..
T Consensus 81 ~~~~~~~--------------~~~~~--~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 136 (360)
T d1w23a_ 81 TMLPMNL--------------LTKGT--IGNYVLTGSWSEKALKEAKLLGETHIAASTKANSYQSIPDFSEF-------- 136 (360)
T ss_dssp HHHHHHH--------------CCTTC--EEEEEECSHHHHHHHHHHHTTSEEEEEEECGGGTSCSCCCGGGC--------
T ss_pred HHHHhhh--------------cccCc--ccceeeccchhhhhHHHHHHhhhcceeeccccccccchhhhhhc--------
Confidence 4433321 34555 455544444333322 223455555554443333333443332
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
.+.+.+.+++|.||.+.|+++|+++||++|+++++|+++++|+.++|+..+ ++|+++++.||++ |++.|+++.+
T Consensus 137 -~~~~~~~~~~~~tg~~~~~~~i~~~~~~~g~l~ivDavqs~g~~~id~~~~---~vd~~~~~~~k~~--~~~~~~~~~~ 210 (360)
T d1w23a_ 137 -QLNENDAYLHITSNNTIYGTQYQNFPEINHAPLIADMSSDILSRPLKVNQF---GMIYAGAQKNLGP--SGVTVVIVKK 210 (360)
T ss_dssp -CCCTTEEEEEEESEETTTTEECSSCCCCCSSCEEEECTTTTTSSCCCGGGC---SEEEEETTTTTSC--TTCEEEEEEH
T ss_pred -ccccccceeEecCCccccceeeeeccccceeeEEeeccccccccccccccc---cceEEeecccccc--CCcceeeEec
Confidence 233345678899999999999999999999999999999999999999886 7777777777754 4456777776
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEETYIER 390 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~ 390 (609)
+.. .....+...++.. ...........++..... ....+... .+..+...+..+.+.....
T Consensus 211 ~~~--~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 273 (360)
T d1w23a_ 211 DLL--NTKVEQVPTMLQY--------------ATHIKSDSLYNTPPTFSIYMLRNVLDWI-KDLGGAEAIAKQNEEKAKI 273 (360)
T ss_dssp HHH--CSCCTTCCGGGCH--------------HHHHHTTTCSSCCCHHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHHHH
T ss_pred hhh--hcccccCCcchhh--------------hhhhhhhhhcccccceeeechhHHHHHH-hhhhhhHHHHHHHHHHHHH
Confidence 665 2222222111111 000011112223222211 12222222 2333444455555555555
Q ss_pred HHHHhCCCCceEEeCCCCCCCc-ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhh
Q 038499 391 ALERLLPNQNIKILGNTSTKRQ-AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGH 469 (609)
Q Consensus 391 ~~~~L~~~p~i~v~~~~~~~r~-~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~ 469 (609)
....+.....+..+......|+ .+++|.+.+ + .+...+.+.|. +.||.++.|..|.
T Consensus 274 ~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~-~----------------~~~~~~~~~l~-~~GI~~~~G~~~~----- 330 (360)
T d1w23a_ 274 IYDTIDESNGFYVGHAEKGSRSLMNVTFNLRN-E----------------ELNQQFLAKAK-EQGFVGLNGHRSV----- 330 (360)
T ss_dssp HHHHHHTTTTSSEESSCGGGBCSSEEEEECSS-H----------------HHHHHHHHHHH-HTTEESCBCCTTT-----
T ss_pred HHHHHhhcccccccCCChhhcceeEEEEEcCC-C----------------ccHHHHHHHHH-HCCCeeeeCCCcc-----
Confidence 5544444334444433233444 478888765 3 35667888885 5799999886554
Q ss_pred hhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 470 HLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 470 ~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
|.+|+|+..++|.||+++|++.|++..++
T Consensus 331 --------------------------ggiRiS~~~~~t~e~V~~Li~~~~~~~~~ 359 (360)
T d1w23a_ 331 --------------------------GGCRASIYNAVPIDACIALRELMIQFKEN 359 (360)
T ss_dssp --------------------------CSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred --------------------------CcEEEEeeCCCCHHHHHHHHHHHHHHHhc
Confidence 34899998888999999999999987664
|
| >d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.8e-23 Score=216.84 Aligned_cols=335 Identities=16% Similarity=0.085 Sum_probs=235.2
Q ss_pred EecCCCC---CCC-hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHH
Q 038499 80 YADHTAS---GRS-LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKR 155 (609)
Q Consensus 80 yld~~a~---g~~-~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~ 155 (609)
|+|.+++ |.. .+.+.+++.+.+.++ +. ++..+....+....+.++++.|++++|.+ ..+++++|+.+++..
T Consensus 40 ~l~f~s~dYLGl~~~p~v~~a~~~a~~~~-G~-~~~~sr~~~g~~~~~~~lE~~LA~~~g~e---~al~~~SG~~an~~~ 114 (383)
T d1bs0a_ 40 YLNFSSNDYLGLSHHPQIIRAWQQGAEQF-GI-GSGGSGHVSGYSVVHQALEEELAEWLGYS---RALLFISGFAANQAV 114 (383)
T ss_dssp EEECSCCCTTSGGGCHHHHHHHHHHHHHH-CS-CCCSBTTTTCCCHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHHH
T ss_pred EEEEEcccccccCCCHHHHHHHHHHHHHh-CC-CCCccccccCcchHHHHHHHHHHHhcCCC---ceEEecccchhhHHH
Confidence 5555544 332 456778887877764 32 22223344456788899999999999986 345555888865554
Q ss_pred HHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCce
Q 038499 156 LQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 156 l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~ 235 (609)
+ .++. .++| .|++....|.+.....+..+++++.++.+ |+++|++.+.+.. ++.+
T Consensus 115 i-~al~---------------~~~d--~v~~d~~~h~si~~g~~~~~~~~~~~~hn-----d~~~le~~l~~~~--~~~~ 169 (383)
T d1bs0a_ 115 I-AAMM---------------AKED--RIAADRLSHASLLEAASLSPSQLRRFAHN-----DVTHLARLLASPC--PGQQ 169 (383)
T ss_dssp H-HHHC---------------CTTC--EEEEETTCCHHHHHHHHTSSSEEEEECTT-----CHHHHHHHHHSCC--SSCE
T ss_pred H-Hhhc---------------CCCc--eEEeeccccHHHhhccccCCCcceEecch-----HHHHHHHHhcccC--CCce
Confidence 4 4442 6777 79999999999999999999999988865 8999999987532 4567
Q ss_pred EEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCC---CCCCccEEEEcCCCCCCCCCCcEEEEEe
Q 038499 236 LGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSG---QTDGYDAIFLSTHKFLGGPGSPGILLMT 312 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~L~~~ 312 (609)
+|+++.+.+++|.+.|+++|.++|++||+++++|+||+.+....+-... .....|+++.++.|.+|+++ |++..+
T Consensus 170 ~vv~e~v~s~~G~i~pl~~l~~l~~~~~~~livDeah~~gv~G~~g~G~~~~~~~~~~~~~~t~~ka~g~~G--g~v~~~ 247 (383)
T d1bs0a_ 170 MVVTEGVFSMDGDSAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGFGVSG--AAVLCS 247 (383)
T ss_dssp EEEEESBCTTTCCBCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTTSSCC--EEEEEC
T ss_pred EEEecCCCCCCCcccchhHHHHHHHhcCcEEEeecceeeeecCCcccchHHHcCCccccccccccccccccc--cccccc
Confidence 9999999999999999999999999999999999999988665442211 11245788889999998655 777777
Q ss_pred chhhccCCCCCCccCCCceEeecccccccccccccccccc-cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 313 KALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE-SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 313 ~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~-~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
.+. .+.++.. ++ ...+ ....|...+.+.+++.+. +....+..+++..++..++
T Consensus 248 ~~~--~~~l~~~---~~-------------------~~~~s~~~~p~~~aa~~~a~~~~--~~~~~~~~~~~l~~~~~~~ 301 (383)
T d1bs0a_ 248 STV--ADYLLQF---AR-------------------HLIYSTSMPPAQAQALRASLAVI--RSDEGDARREKLAALITRF 301 (383)
T ss_dssp HHH--HHHHHHH---CH-------------------HHHSSBCCCHHHHHHHHHHHHHH--HSHHHHHHHHHHHHHHHHH
T ss_pred hhH--HHHHHhh---ch-------------------hhhhcccccchHHHHHHHHHHHH--HhhhhHHHHHHHHHHHHHH
Confidence 776 2222110 00 0111 123345555555555543 3344566778888899999
Q ss_pred HHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh
Q 038499 392 LERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL 471 (609)
Q Consensus 392 ~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l 471 (609)
.+.|.++ ++.+... ..||+...+.. + .....+.+.|.+ .||.+.+....+.|.+
T Consensus 302 ~~~l~~~-g~~~~~~----~s~Ii~v~~g~-~----------------~~a~~~~~~L~~-~Gi~v~~~~~PtVp~g--- 355 (383)
T d1bs0a_ 302 RAGVQDL-PFTLADS----CSAIQPLIVGD-N----------------SRALQLAEKLRQ-QGCWVTAIRPPTVPAG--- 355 (383)
T ss_dssp HHHHTTS-SCEECSC----CSSBCCEEEES-H----------------HHHHHHHHHHHH-TTEECCEECTTSSCTT---
T ss_pred HHHHHhc-CCccCCC----CCCEEEEEECC-H----------------HHHHHHHHHHHH-CCceEEEEcCCCCCCC---
Confidence 9999987 6766543 34665555543 1 135578888877 5999986543332321
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
...+|++++.++|+||||+++++|+.+
T Consensus 356 -----------------------~~~lRi~~~a~ht~edid~l~~~L~~~ 382 (383)
T d1bs0a_ 356 -----------------------TARLRLTLTAAHEMQDIDRLLEVLHGN 382 (383)
T ss_dssp -----------------------CEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred -----------------------CceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence 367999999999999999999999864
|
| >d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=3e-23 Score=217.85 Aligned_cols=327 Identities=16% Similarity=0.051 Sum_probs=214.5
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--CCCCCcEEEeCChHHHHHHHHHHHhcccch
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--GGQEDAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--~~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
+.|+.|.+++.+.+..- .. .|....+..++++.+.+++.+..| .+++ +|++| +|++.++..++.++.
T Consensus 44 ~~p~~i~~a~~~~~~~~----~~-~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~-~i~it-~G~~~al~~~~~~l~---- 112 (382)
T d1b5pa_ 44 DTPEHVKEAARRALAQG----KT-KYAPPAGIPELREALAEKFRRENGLSVTPE-ETIVT-VGGSQALFNLFQAIL---- 112 (382)
T ss_dssp CCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHTTCCCCCGG-GEEEE-SHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHhcC----Cc-CCCCCCCCHHHHHHHHhhhhhhcccccccc-cceec-CCHHHHHHHHHHHhC----
Confidence 56788999998877531 11 121222233444444444444444 3455 89998 899999999988873
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEeccc
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACS 243 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~s 243 (609)
++|| .|++..+.|+.+...++..|++++.++.++ +..+|+++++++++ ++++++++++|+
T Consensus 113 -----------~~gd--~vl~~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-----~~~~~i~~~~P~ 174 (382)
T d1b5pa_ 113 -----------DPGD--EVIVLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPERVRRAIT-----PRTKALVVNSPN 174 (382)
T ss_dssp -----------CTTC--EEEEEESCCTHHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHTTCC-----TTEEEEEEESSC
T ss_pred -----------CCCC--EEEECCCCcHHHHHHHHHhcCeEEEEecccccccCCCHHHHHHhCC-----CCCeEEEECCCC
Confidence 7898 699999999999888999999999999765 45789999999887 689999999999
Q ss_pred CccccccC---HHHHHHHHHHhCCeEEEeccccCCcc-cccCCCC-CCCCccEEEEcCCCCCCCC-CCcEEEEEechhhc
Q 038499 244 NVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-EIDVRSG-QTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQ 317 (609)
Q Consensus 244 n~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~-~id~~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~ 317 (609)
||||.+.+ +++|+++|++||+++|+|++++.-.. .-...+. ......+++.|++|.++.| ..+|++++++++.
T Consensus 175 NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~GlR~G~~~~~~~~i- 253 (382)
T d1b5pa_ 175 NPTGAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEGEHFSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVI- 253 (382)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSCCCCGGGTCTTTEEEEEESTTTTTCGGGCCEEEECCHHHH-
T ss_pred CCcchhCCHHHHHHHHHHHHHcCeEEEEEccccceecCCCCCCHHHcCCCCEEEEecchhhccCcHhheEEEEECHHHH-
Confidence 99999987 56688999999999999999763211 1001111 0123457788999999855 3599999998872
Q ss_pred cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHH-HHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 318 LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAA-LAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aa-l~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
+.+... ......+++...+.+.+. +..........+..++..+..++.+.+.+.
T Consensus 254 -~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (382)
T d1b5pa_ 254 -KAMASV------------------------SRQSTTSPDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLT 308 (382)
T ss_dssp -HHHHHH------------------------HHTTTCSCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHH------------------------HHhcccCcccccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHh
Confidence 222100 011112233333322211 111101111233445555566667777776
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
.. ++++..+ ..+++.|.-.. +. ..+...+.+.|.+ .||.+++|..|.+
T Consensus 309 ~~-g~~~~~p----~gg~~~~~~~~-~~--------------~~~~~~~~~~l~e-~gV~v~PG~~F~~----------- 356 (382)
T d1b5pa_ 309 AL-GLKAVRP----SGAFYVLMDTS-PI--------------APDEVRAAERLLE-AGVAVVPGTDFAA----------- 356 (382)
T ss_dssp HH-TCCBCCC----SBTTEEEEECT-TT--------------CSSHHHHHHHHHH-TTEECEESGGGTC-----------
T ss_pred hc-CCeEecC----CceEEEeEeCC-CC--------------CCCHHHHHHHHHH-CCEEEEeCcccCC-----------
Confidence 54 5655543 44555555443 11 1356778888866 5999999876651
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
++++||+++ .++|+++..++.|+++
T Consensus 357 ------------------~~~iRis~~--~~~e~l~~al~rl~~~ 381 (382)
T d1b5pa_ 357 ------------------FGHVRLSYA--TSEENLRKALERFARV 381 (382)
T ss_dssp ------------------TTEEEEECC--SCHHHHHHHHHHGGGG
T ss_pred ------------------CCeEEEEEc--CCHHHHHHHHHHHHHh
Confidence 489999996 5788888888877654
|
| >d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase ArnB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=4.6e-23 Score=215.58 Aligned_cols=337 Identities=13% Similarity=0.060 Sum_probs=217.2
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
..+++++.+++++|.+ .+++|+|||+ |+..++.+++ +++|| +|++++++|++...++...
T Consensus 32 ~v~~~E~~la~~~g~~---~ai~~~sgt~-Al~~al~al~--------------~~~gd--eVi~~~~~~~~~~~ai~~~ 91 (376)
T d1mdoa_ 32 KNQELEAAFCRLTGNQ---YAVAVSSATA-GMHIALMALG--------------IGEGD--EVITPSMTWVSTLNMIVLL 91 (376)
T ss_dssp HHHHHHHHHHHHHCCS---EEEEESCHHH-HHHHHHHHTT--------------CCTTC--EEEEESSSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---eEEEeCCHHH-HHHHHHHHhC--------------CCCCC--EEEEecccccccccchhcc
Confidence 4678899999999985 4577767755 7888888876 58999 7999999999999999999
Q ss_pred CceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc
Q 038499 202 LAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID 280 (609)
Q Consensus 202 G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id 280 (609)
|++++.++++. ++.+|+++|+++++ ++|++|+++| ..|...|+++|.++|++||+++|+|+||+.|...-+
T Consensus 92 g~~pv~~d~~~~~~~~d~~~l~~~i~-----~~tkaIi~~h---~~G~~~~~~~i~~i~~~~~i~vIeD~a~a~g~~~~~ 163 (376)
T d1mdoa_ 92 GANPVMVDVDRDTLMVTPEHIEAAIT-----PQTKAIIPVH---YAGAPADLDAIYALGERYGIPVIEDAAHATGTSYKG 163 (376)
T ss_dssp TCEEEEECBCTTTCCBCHHHHHHHCC-----TTEEEECCBC---GGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETT
T ss_pred ccceeeecccccccCCCHHHHHHhcC-----CCCeEEEEeC---CCCCccchhHHHHHHHhcCceEEeccchhccCeeCC
Confidence 99999999987 57899999999998 6899887664 689999999999999999999999999998855433
Q ss_pred CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCc-eEeecccccccccccccccccccCCChhH
Q 038499 281 VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGT-VNYVNGFNEKDTLYLEDIEERESGGTPQV 359 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~-v~~~~~~~~~~~~~~~~~~~r~~~gtp~i 359 (609)
...+ ..+..+++|+++|.++++.| |+++++++.. ...++.....|.. .............| .....|...-
T Consensus 164 ~~~g-~~g~~~~Sf~~~K~l~~g~G-G~i~t~~~~l-~~~~~~~~~~g~~~~~~~~~~~~~~~~~-----~~~~~g~n~~ 235 (376)
T d1mdoa_ 164 RHIG-ARGTAIFSFHAIKNITCAEG-GIVVTDNPQF-ADKLRSLKFHGLGVDAWDRQSGGRAPQA-----EVLAPGYKYN 235 (376)
T ss_dssp EETT-SSSEEEEECCTTSSSCSSSC-EEEEESCHHH-HHHHHHHTBTTEECC-----------CC-----EESSCCCBCC
T ss_pred eecc-cccCccccCCCcCCCCCCCC-CEEEEechhH-HHHHHhhcccCCcccccccccccccccc-----cchhcccccc
Confidence 2222 12445566677899986665 8888887642 1111111111110 00000000000000 0011121111
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCc--ceEEEEeccCCCCCcCCCCCCCCCC
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQ--AILSFNIHSSTINSSLGENTKTETD 437 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~--~~~~f~~~~~~~~~~~~~~~~~~~~ 437 (609)
+.-+.+++.+. +....+.+.++.+++++++.+.|++++.+.+......... ..+...+.. . .
T Consensus 236 ~~~~~Aai~~~--qL~~~~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------~ 299 (376)
T d1mdoa_ 236 LPDLNAAIALA--QLQKLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVDE-A-------------R 299 (376)
T ss_dssp CCHHHHHHHHH--HHHTHHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECCH-H-------------H
T ss_pred cchhhhhhhhh--hhhhhhHHHHHHhhhhhhhhhhccccccccccccccccccccccccccccc-c-------------c
Confidence 11112222222 2235677888889999999999999877766544321111 122222221 0 0
Q ss_pred CCCChHHHHHHHhhhcCcEeccCcccC--Chh-hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHH
Q 038499 438 KPLHGPFVATLLNDLFGIQARGGCACA--GPY-GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFT 514 (609)
Q Consensus 438 ~~l~~~~v~~~L~~~~GI~v~~G~~ca--~p~-~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~l 514 (609)
...+.+.+.+.|.+ .||.++...... .|+ .......+.+.++.+ ....+.|.+++.+|++|++++
T Consensus 300 ~~~~Rd~l~~~L~~-~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~-----------~~~~i~LP~~~~lt~~ei~~I 367 (376)
T d1mdoa_ 300 CGITRDALMASLKT-KGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWN-----------SERICSLPLFPDMTESDFDRV 367 (376)
T ss_dssp HSSCHHHHHHHHHH-TTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHH-----------HTTEEEECCCTTCCHHHHHHH
T ss_pred chhhHHHHHHHHHH-CCCCeeeECcchhcCHHHHhhCCCCCCHHHHHH-----------HhCEEEccCCCCCCHHHHHHH
Confidence 01345679999966 599998643211 111 111111222334433 257899999999999999999
Q ss_pred HHHHHHHH
Q 038499 515 LEALEFIA 522 (609)
Q Consensus 515 l~al~~v~ 522 (609)
+++|++++
T Consensus 368 ~~~i~~i~ 375 (376)
T d1mdoa_ 368 ITALHQIA 375 (376)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 99999875
|
| >d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Tyrosine aminotransferase (TAT) species: Trypanosoma cruzi [TaxId: 5693]
Probab=99.91 E-value=4.2e-22 Score=211.12 Aligned_cols=340 Identities=13% Similarity=0.009 Sum_probs=220.0
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC--------CCCCCcEEEeCChHHHHHHHHHHH
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG--------GGQEDAMIFCGSGTTAAIKRLQEV 159 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g--------~~~~~~vift~sGttaal~~l~~~ 159 (609)
+.++.+.+++.+.+... ..+ .|....+..++++.+.+++.+.++ .+++ +|++| +|+++++..++.+
T Consensus 47 ~~~~~~~~~~~~~~~~~--~~~--~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~~~~~~-~I~it-~G~~~al~~~~~~ 120 (412)
T d1bw0a_ 47 LTSAAQIKKLKEAIDSQ--ECN--GYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKD-NVVLC-SGGSHGILMAITA 120 (412)
T ss_dssp CCCHHHHHHHHHHHHTT--CSS--SCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGG-GEEEE-SHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHhhCC--CCC--CCCCCcCCHHHHHHHHHHHHHhcCcccccCCCCCCC-eEEEe-cccccchhhhhhh
Confidence 34567777777655321 111 122222334455555555555432 3444 89998 8999999999888
Q ss_pred hcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEE
Q 038499 160 MGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 160 l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
+ +++|| .|+++.+.|+.+...++..|++++.+++++ ++..++++|++++. ++++++
T Consensus 121 l---------------~~~Gd--~Vlv~~P~y~~~~~~~~~~G~~~~~v~~~~~~~~~~~~~~l~~~~~-----~~~~~~ 178 (412)
T d1bw0a_ 121 I---------------CDAGD--YALVPQPGFPHYETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKD-----DKTKLL 178 (412)
T ss_dssp H---------------CCTTC--EEEEEESCCTHHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCC-----TTEEEE
T ss_pred h---------------hcccc--ceeeeeccchhhhhhhhccCccccccccccccccchhhHHHHhhhh-----cccccc
Confidence 7 48999 689999999999888999999999999875 45789999999887 688999
Q ss_pred EEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccC----CCCCCCCccEEEEcCCCCCCCCC-C
Q 038499 238 SFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDV----RSGQTDGYDAIFLSTHKFLGGPG-S 305 (609)
Q Consensus 238 ~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~----~~~~~~~~D~v~~S~hK~lggp~-g 305 (609)
++++++||||.+.+ +++|+++|++|++++|+|+++..-. .+... ........-+++.|++|.++.|+ .
T Consensus 179 ~l~np~NPtG~~~~~~~~~~i~~~~~~~~~~vi~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~R 258 (412)
T d1bw0a_ 179 IVTNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGWR 258 (412)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGGC
T ss_pred ccccccccccccchhhhccccccccccCCeeeechhhHHHhccCCCCCccccccccccccccccccccccCccCccCCCC
Confidence 99999999999977 5668888999999999999975321 11110 00000112356668999987553 5
Q ss_pred cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHH-HhcCHHHHHHHH
Q 038499 306 PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVK-EYIGHEVIKKQE 384 (609)
Q Consensus 306 ~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~-~~~g~~~i~~~~ 384 (609)
+|++++++.. .....-. ..... ......+.....+...+ +.... .....+.+.++.
T Consensus 259 vG~~~~~~~~--~~~~~~~------------------~~~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 315 (412)
T d1bw0a_ 259 LGWLLYVDPH--GNGPSFL------------------EGLKR-VGMLVCGPCTVVQAALG--EALLNTPQEHLDQIVAKI 315 (412)
T ss_dssp CEEEEEECTT--CSCHHHH------------------HHHHH-HHHHHTCSCHHHHHHHH--HHHHSSCHHHHHHHHHHH
T ss_pred cccccccchh--hcchhhh------------------hhhcc-ccccccCCchhhhhhcc--cccccccccccccccchh
Confidence 9999998776 2111000 00000 01111223333322211 11111 111345667778
Q ss_pred HHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC
Q 038499 385 ETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA 464 (609)
Q Consensus 385 ~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca 464 (609)
++.++++.+.|.+.+++.+..+ ..+++.|.-.+ ... .....+..++++.|.++.||.+.+|..|.
T Consensus 316 ~~~r~~~~~~l~~~~g~~~~~p----~gg~~l~~~~~-~~~----------~~~~~~~~~~~~~ll~~~gV~v~PG~~Fg 380 (412)
T d1bw0a_ 316 EESAMYLYNHIGECIGLAPTMP----RGAMYLMSRID-LEK----------YRDIKTDVEFFEKLLEEENVQVLPGTIFH 380 (412)
T ss_dssp HHHHHHHHHHHTTSTTEEECCC----CBTTEEEEEEC-GGG----------BSSCCSHHHHHHHHHHHHCEECEEGGGGT
T ss_pred HHHHHHHHHHHHHhcCceecCC----CCceEEEEeCC-hhh----------cCCCCCHHHHHHHHHHhCCEEEEeccccC
Confidence 8888999999988889988755 34555544332 100 00112466778887777899999987664
Q ss_pred ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 465 GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 465 ~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
+ +|++|||+. .++++++..++.|+..+++
T Consensus 381 ~-----------------------------~g~iRis~~--~~~e~l~eal~Rl~~~l~~ 409 (412)
T d1bw0a_ 381 A-----------------------------PGFTRLTTT--RPVEVYREAVERIKAFCQR 409 (412)
T ss_dssp C-----------------------------TTEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred C-----------------------------CCeEEEEEc--CCHHHHHHHHHHHHHHHHh
Confidence 2 589999986 5788888888888877654
|
| >d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: L-threonine-O-3-phosphate decarboxylase CobD species: Salmonella enterica [TaxId: 28901]
Probab=99.91 E-value=1.1e-22 Score=211.27 Aligned_cols=313 Identities=13% Similarity=0.044 Sum_probs=199.8
Q ss_pred ChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhH
Q 038499 89 SLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSIL 168 (609)
Q Consensus 89 ~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~ 168 (609)
.|+.+.+++.+.+......|.. + ..++|+.+++++|.+++ +|+++ +|++.++..+...+
T Consensus 36 ~p~~~~~a~~~~~~~~~~Yp~~-----~------~~~Lr~aia~~~~v~~~-~I~~~-~g~~~~~~~~~~~~-------- 94 (355)
T d1lc5a_ 36 MPVSVKRALIDNLDCIERYPDA-----D------YFHLHQALARHHQVPAS-WILAG-NGETESIFTVASGL-------- 94 (355)
T ss_dssp CCHHHHHHHHHTGGGGGSCCCT-----T------CHHHHHHHHHHHTSCGG-GEEEE-SSHHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHHHHhccCCCC-----C------hHHHHHHHHHHhCCCHH-HEEec-ccHHHHHHHHHhhh--------
Confidence 4677888888766443111211 1 24689999999999886 88887 78888877776554
Q ss_pred HHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccc
Q 038499 169 REKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTG 247 (609)
Q Consensus 169 ~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG 247 (609)
.+++ .+|.. +.++.+.......+++++.++++. ++....+++.+++. ++++++++++|+||||
T Consensus 95 --------~~~~-~~v~~--p~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~v~l~nP~NPtG 158 (355)
T d1lc5a_ 95 --------KPRR-AMIVT--PGFAEYGRALAQSGCEIRRWSLREADGWQLTDAILEALT-----PDLDCLFLCTPNNPTG 158 (355)
T ss_dssp --------CCSE-EEEEE--SCCTHHHHHHHHTTCEEEEEECCGGGTTCCCTTHHHHCC-----TTCCEEEEESSCTTTC
T ss_pred --------cccc-ccccC--CccceeccccccccccceeeeeeccCCccceeeeeeccc-----cccceeeeecccCccc
Confidence 2333 13333 445555556667789999999864 33233355666666 6899999999999999
Q ss_pred cccC---HHHHHHHHHHhCCeEEEeccccCCc-ccccCCCC-CCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCC
Q 038499 248 IYSD---TRSIARLLHQYGGFACFDFAASGPY-VEIDVRSG-QTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSF 321 (609)
Q Consensus 248 ~~~d---l~~I~~la~~~g~~vivD~A~~~~~-~~id~~~~-~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~ 321 (609)
.+.+ +++|+++|++|++++++|+++.... ........ ......+++.|++|++|-| ..+|+++++++... ..+
T Consensus 159 ~~~~~e~l~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~GlR~G~~i~~~~~~~-~~~ 237 (355)
T d1lc5a_ 159 LLPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFYAIPGLRLGYLVNSDDAAM-ARM 237 (355)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTTTCTTTCCEEEECCCHHHH-HHH
T ss_pred ccchhhhhhhhhhhccccccccccccceeeeeeecccccccccccccceeecccccccccccccccceeccchhhh-HHH
Confidence 9988 5568888999999999999975311 11111111 1123457888999999844 35899999876521 111
Q ss_pred CCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce
Q 038499 322 PPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI 401 (609)
Q Consensus 322 ~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i 401 (609)
. ......+.+..+...+. ..+++........++.++.++++.+.|.+++++
T Consensus 238 ~---------------------------~~~~~~~~~~~~~~~a~--~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 288 (355)
T d1lc5a_ 238 R---------------------------RQQMPWSVNALAALAGE--VALQDSAWQQATWHWLREEGARFYQALCQLPLL 288 (355)
T ss_dssp H---------------------------HHSCTTCSCHHHHHHHH--HGGGCHHHHHHHHHHHHHHHHHHHHHHHTSTTE
T ss_pred H---------------------------hhcCCcccccccccccc--ccccccchhHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 0 00001111222211111 111222234455667777788899999999898
Q ss_pred EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHH
Q 038499 402 KILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQ 481 (609)
Q Consensus 402 ~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~ 481 (609)
++... ..+++++.+.. +..++++.|.+ .||.+++|..+.+.
T Consensus 289 ~~~p~----~~~f~~~~~~~-------------------~~~~~~~~L~~-~gv~vr~~~~f~~~--------------- 329 (355)
T d1lc5a_ 289 TVYPG----RANYLLLRCER-------------------EDIDLQRRLLT-QRILIRSCANYPGL--------------- 329 (355)
T ss_dssp EECCC----SSSEEEEEESC-------------------TTCCHHHHHHT-TTEECEECTTSTTC---------------
T ss_pred EECCC----CCEEEEEECCC-------------------CHHHHHHHHHH-CCcEEEeCccCCCC---------------
Confidence 87533 22334333322 34567888866 59999987655311
Q ss_pred HHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 482 IRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 482 ~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.++|+|||++ +++|+++++++|++++
T Consensus 330 ------------~~~~iRis~~---~~~e~~~li~aL~~il 355 (355)
T d1lc5a_ 330 ------------DSRYYRVAIR---SAAQNERLLAALRNVL 355 (355)
T ss_dssp ------------CTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred ------------CCCEEEEEeC---CHHHHHHHHHHHHHhC
Confidence 2589999997 8999999999999873
|
| >d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative alanine aminotransferase species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.91 E-value=2.1e-22 Score=212.43 Aligned_cols=338 Identities=13% Similarity=0.000 Sum_probs=223.1
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccch
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
++|+.+.+++.+.+..- .+ .|....+..++++.+.+++.+..|.+ ++ +|++| +|+++++..++..+
T Consensus 46 ~~p~~i~~a~~~a~~~~----~~-~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~i~i~-~G~~~~~~~~~~~~----- 113 (395)
T d1xi9a_ 46 QPPEHMKEAYCKAIKEG----HN-YYGDSEGLPELRKAIVEREKRKNGVDITPD-DVRVT-AAVTEALQLIFGAL----- 113 (395)
T ss_dssp CCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHCCCCCGG-GEEEE-SHHHHHHHHHHHHH-----
T ss_pred CCCHHHHHHHHHHHhcC----CC-CCCCCCCCHHHHHHHHHhhhhccccccccc-ccccc-cccchhhhhhhhhh-----
Confidence 56788999998887531 11 12222233455555666666666654 43 89888 89998998888876
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEeccc
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACS 243 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~s 243 (609)
+.+|| .|++..+.|+.+...++..|++++.++... ++.+|++++++++. ++++++++++|+
T Consensus 114 ----------~~~Gd--~vlv~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~~~~-----~~~~~v~l~~P~ 176 (395)
T d1xi9a_ 114 ----------LDPGD--EILVPGPSYPPYTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKIT-----DRTKAIAVINPN 176 (395)
T ss_dssp ----------CCTTC--EEEEEESCCHHHHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCC-----TTEEEEEEESSC
T ss_pred ----------cCCCC--EEEEcCCccccchhhhhhcCCEEEEEeccccccccchHHHHHHhhc-----ccccEEEecCCC
Confidence 47898 699999999998888999999999998654 56789999999987 689999999999
Q ss_pred CccccccCH---HHHHHHHHHhCCeEEEeccccCCccccc-CC--CCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhh
Q 038499 244 NVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVEID-VR--SGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALY 316 (609)
Q Consensus 244 n~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~~id-~~--~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~ 316 (609)
||||.+.+. ++|+++|++||++++.|+++......-. .. ......--+++.|++|.++.|+ .+|++++.....
T Consensus 177 NPTG~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~GlRvG~~~~~~~~~ 256 (395)
T d1xi9a_ 177 NPTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGWRLGYMYFVDPEN 256 (395)
T ss_dssp TTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGGCCEEEEEECTTC
T ss_pred CCccchhhHHHHHHHHhhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchhhcEeeEecCHHH
Confidence 999999884 5688899999999999999754211100 00 0111123477789999988553 489988754320
Q ss_pred ccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
.+..+... ... ......+.+.+.+.+. ...+.......+..+++.++.++.+.+.|.
T Consensus 257 ~~~~~~~~--------------------~~~-~~~~~~~~~~~~q~a~--~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~ 313 (395)
T d1xi9a_ 257 KLSEVREA--------------------IDR-LARIRLCPNTPAQFAA--IAGLTGPMDYLKEYMKKLKERRDYIYKRLN 313 (395)
T ss_dssp TTHHHHHH--------------------HHH-HHHHTCCSCSHHHHHH--HHHHHSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--------------------HHH-hhcCCCCcCHHHHHHH--HHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000 000 0111122333333221 111111122345666777788889999999
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
+++++.+..+ ..+++.|.-.+ . ....+..+++..|.+++||.+.+|..|...
T Consensus 314 ~~~~~~~~~p----~gg~~~~~~l~-~-------------~~~~~~~~~~~~ll~~~gV~v~PG~~Fg~~---------- 365 (395)
T d1xi9a_ 314 EIPGISTTKP----QGAFYIFPKIE-V-------------GPWKNDKEFVLDVLHNAHVLFVHGSGFGEY---------- 365 (395)
T ss_dssp TSTTEECCCC----CBSSEECCEEC-S-------------CSCSSHHHHHHHHHHHHCEECEEGGGGCGG----------
T ss_pred hCCCceecCC----CeeEEEeEECC-C-------------CCCCCHHHHHHHHHHhCCEEEEcChhhCCC----------
Confidence 8877776654 34555554333 1 111345667777667789999999877521
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.++++||++. .++++++..++.|++++++
T Consensus 366 -----------------~~~~~Ris~~--~~~e~l~eal~rl~~~l~e 394 (395)
T d1xi9a_ 366 -----------------GAGHFRAVFL--PPIEILEEAMDRFEKFMKE 394 (395)
T ss_dssp -----------------GTTBEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -----------------CCCEEEEEec--CCHHHHHHHHHHHHHHHhc
Confidence 1589999986 5788999999999888764
|
| >d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Modulator in mal gene expression, MalY species: Escherichia coli [TaxId: 562]
Probab=99.91 E-value=3.3e-22 Score=208.02 Aligned_cols=335 Identities=10% Similarity=0.040 Sum_probs=217.2
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccch
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
|+|+.|.+++.+.+.. .... |....+ .++++.+.+++++.+|.+ ++ +|++| +|+++++..++..+
T Consensus 12 ~~p~~i~eal~~~~~~----~~~~-Y~~~~g-~~lr~~ia~~~~~~~g~~~~~~-~i~it-~G~~~~l~~~~~~l----- 78 (361)
T d1d2fa_ 12 ATAPCIIEALNQRLMH----GVFG-YSRWKN-DEFLAAIAHWFSTQHYTAIDSQ-TVVYG-PSVIYMVSELIRQW----- 78 (361)
T ss_dssp CCCHHHHHHHHHHHTT----CCCC-CCCSCC-HHHHHHHHHHHHHHSCCCCCGG-GEEEE-SCHHHHHHHHHHHS-----
T ss_pred CCCHHHHHHHHHHHhC----CCCC-CCCCCC-HHHHHHHHHHHHHHhCCCCCcc-eEEEe-CCHHHHHHHHhhhc-----
Confidence 6778899999887642 1111 211112 345666666777776764 44 89998 89999999988887
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC---CCCCCHHHHHHHHhhhccCCCceEEEEecc
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD---DGLLDIEALRSKLELYKDAKRPILGSFSAC 242 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~---~g~ld~e~L~~al~~~~~~~~~~lv~~s~~ 242 (609)
+++|| .|+++.+.|+.+...++..|.+++.++.+. ++.+|++.+++.+.+ +++++++++++
T Consensus 79 ----------~~~gd--~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~~~~~~~~----~~~~~i~l~~p 142 (361)
T d1d2fa_ 79 ----------SETGE--GVVIHTPAYDAFYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAK----PECKIMLLCSP 142 (361)
T ss_dssp ----------SCTTC--EEEEEESCCHHHHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTS----TTEEEEEEESS
T ss_pred ----------ccccc--ccccccccccchhHHHHhhcceEEeecccccccccccccccchhhccc----CCceeEEeccc
Confidence 48999 699999999999888989999999888753 346899999999975 68999999999
Q ss_pred cCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc----cccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEech
Q 038499 243 SNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV----EIDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKA 314 (609)
Q Consensus 243 sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~----~id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~ 314 (609)
+||||.+.+ +++|+++|+++|+++|+|++++.... ...+... ..+..+++.|++|.++.| .++|++++...
T Consensus 143 ~NPTG~~~s~~~~~~i~~~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~-~~~~~v~~~s~SK~~~~~g~R~g~~~~~~~ 221 (361)
T d1d2fa_ 143 QNPTGKVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNV-ARGDWALLTSGSKSFNIPALTGAYGIIENS 221 (361)
T ss_dssp CTTTCCCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGT-CCSSEEEEECSHHHHTCGGGCCEEEEECSH
T ss_pred ccccccccchhhhhhhhhhhhhhheeeeecccccccccccccccccccc-cccccccccccccccccccccceeeecchh
Confidence 999999977 67899999999999999999764211 1111111 112346777888977644 25899887754
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
......... ........++...+...+ +..........+.++...++.++.+.+.
T Consensus 222 ~~~~~~~~~------------------------~~~~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 276 (361)
T d1d2fa_ 222 SSRDAYLSA------------------------LKGRDGLSSPSVLALTAH-IAAYQQGAPWLDALRIYLKDNLTYIADK 276 (361)
T ss_dssp HHHHHHHHH------------------------HHTTSCCCSCCHHHHHHH-HHHHHHCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhh------------------------cccccccccchhhhHHHH-HHHhhccchhhhcccccchhhHHHHHHH
Confidence 311000000 011111233444443322 1111111112233444444444444444
Q ss_pred hC-CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcC
Q 038499 395 LL-PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 395 L~-~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~ 473 (609)
+. ..+++.+..+ ..+++.|.-.. +. .++..++++.|.+++||.+.+|..|..+
T Consensus 277 ~~~~~~~~~~~~p----~gg~~~~~~l~-~~--------------~~~~~~~~~~Ll~~~gv~v~pG~~F~~~------- 330 (361)
T d1d2fa_ 277 MNAAFPELNWQIP----QSTYLAWLDLR-PL--------------NIDDNALQKALIEQEKVAIMPGYTYGEE------- 330 (361)
T ss_dssp HHHHCSSCCCCCC----SBCSEEEEECG-GG--------------CCCHHHHHHHHHHTTCEECEEGGGGCGG-------
T ss_pred hhhhccccccccc----CceeEEEEEcc-CC--------------CCCHHHHHHHHHHhCCEEEEeccccCCC-------
Confidence 43 2345555544 34555554332 11 1568889988878889999999876521
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++|||++ .++++++..++.|+++++..
T Consensus 331 --------------------~~~~vRis~~--~~~e~l~~al~rl~~~l~~l 360 (361)
T d1d2fa_ 331 --------------------GRGFVRLNAG--CPRSKLEKGVAGLINAIRAV 360 (361)
T ss_dssp --------------------GTTEEEEECC--SCHHHHHHHHHHHHHHHHHH
T ss_pred --------------------CCCEEEEEEc--CCHHHHHHHHHHHHHHHHhc
Confidence 1489999986 57899999999999888764
|
| >d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 2-amino-3-ketobutyrate CoA ligase species: Escherichia coli [TaxId: 562]
Probab=99.90 E-value=4.2e-22 Score=210.03 Aligned_cols=367 Identities=15% Similarity=0.121 Sum_probs=246.0
Q ss_pred HHHHHHHHHhhcc---------CCCccccCCCCCCceEEecCCCC---CCC-hHHHHHHHHHhhcCCccCCCCCCchhhH
Q 038499 51 SEKKLTWLQSQII---------GKNAEFDSPFGKRRLTYADHTAS---GRS-LRYIENYIINNVLPFYGNTHTCDSYVGQ 117 (609)
Q Consensus 51 ~~~~~~~~r~~~~---------g~~~~~~~p~g~~~~vyld~~a~---g~~-~~~v~~ai~~~~~~~~~n~~~~~~~~~~ 117 (609)
.+..++.+|++=. ..+..+....|++ |+|.+++ |.. .+.|.+++.+.+..+ + .+...+....
T Consensus 12 ~~~~l~~~~~~g~~r~~~~i~~~~g~~v~~~dG~~---~l~f~s~dYLGl~~hp~v~~a~~~a~~~~-g-~~~~~sr~~~ 86 (401)
T d1fc4a_ 12 LTNDLETARAEGLFKEERIITSAQQADITVADGSH---VINFCANNYLGLANHPDLIAAAKAGMDSH-G-FGMASVRFIC 86 (401)
T ss_dssp HHHHHHHHHHTTCCCCCCCBCSCSSSEEEBTTSCE---EEECCCSCTTSCTTCHHHHHHHHHHHHHH-C-SCCCSCHHHH
T ss_pred HHHHHHHHHHcCCCCcceeccCCCCCeEEecCCCE---EEEEEccccccccCCHHHHHHHHHHHHHh-C-CCcccceeec
Confidence 3556677776511 1223333334432 6776653 443 677888888887654 2 2222233344
Q ss_pred HHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH
Q 038499 118 HTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS 197 (609)
Q Consensus 118 ~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (609)
+.....+++++.+++++|.+ .++++++|+.+++..+ ..+. .++| +|++....|++....
T Consensus 87 g~~~~~~~lE~~lA~~~g~e---~al~~~SG~~An~~~i-~~l~---------------~~~d--~i~~d~~~h~s~~~G 145 (401)
T d1fc4a_ 87 GTQDSHKELEQKLAAFLGME---DAILYSSCFDANGGLF-ETLL---------------GAED--AIISDALNHASIIDG 145 (401)
T ss_dssp CCBHHHHHHHHHHHHHHTCS---EEEEESCHHHHHHTTH-HHHC---------------CTTC--EEEEETTCCHHHHHH
T ss_pred cCcHHHHHHHHHHHHhhcCC---ceEEecchhhhhHHHH-HHhc---------------CCCc--EEEeCCcchHHHHcc
Confidence 45678889999999999985 4566668888765544 3332 5677 899999999999999
Q ss_pred HHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc-CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCc
Q 038499 198 WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD-AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPY 276 (609)
Q Consensus 198 ~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~-~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~ 276 (609)
.+..++++..++.. |.+++++.+..... ..+..++++.++.+..|.+.|+++|.++|++||+++++|+||+++.
T Consensus 146 ~~~~~a~~~~~~~~-----d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~L~~l~~L~~~~~a~LivDeah~~g~ 220 (401)
T d1fc4a_ 146 VRLCKAKRYRYANN-----DMQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGF 220 (401)
T ss_dssp HHTSCSEEEEECTT-----CHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECCHHHHHHHHHHTTEEEEEECTTTTTT
T ss_pred ccccCceEEEEcCC-----ChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhhhhHHHHHHhhcCcEEEehhhhcccc
Confidence 99999999888754 77888777754332 2455788999999999999999999999999999999999999875
Q ss_pred ccccCCC-----CCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccc
Q 038499 277 VEIDVRS-----GQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEER 351 (609)
Q Consensus 277 ~~id~~~-----~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r 351 (609)
...+-.. .....+|+++.+++|.+||+.| |++..++++. +.+... +. ...
T Consensus 221 ~g~~G~G~~~~~~~~~~~dii~~tl~Ka~gg~~G-g~v~g~~~~~--~~l~~~--~~--------------------~~~ 275 (401)
T d1fc4a_ 221 VGENGRGSHEYCDVMGRVDIITGTLGKALGGASG-GYTAARKEVV--EWLRQR--SR--------------------PYL 275 (401)
T ss_dssp SSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSC-EEEEECHHHH--HHHHHH--CH--------------------HHH
T ss_pred ccCCCCccchhccCCCCCeEEEeecccccccCCc-ccccCCHHHH--HHHHcC--Ch--------------------hhh
Confidence 5432111 0123689999999999987765 8888888873 222100 00 001
Q ss_pred cc-CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCC
Q 038499 352 ES-GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGE 430 (609)
Q Consensus 352 ~~-~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~ 430 (609)
+. ...|.....+.+++... ...+.++++.+++.+++++.+... ++.+.+. ..|++.+.+.. .
T Consensus 276 ~s~~l~p~~~~aa~~~l~~~----~~~~~~~~~l~~~~~~~~~~l~~~-g~~~~~~----~~pIv~v~~~~-~------- 338 (401)
T d1fc4a_ 276 FSNSLAPAIVAASIKVLEMV----EAGSELRDRLWANARQFREQMSAA-GFTLAGA----DHAIIPVMLGD-A------- 338 (401)
T ss_dssp HSCCCCHHHHHHHHHHHHHH----HTCHHHHHHHHHHHHHHHHHHHHT-TCCBCCS----SSSEEEEEEEC-H-------
T ss_pred hcCCCCHHHHHHHHhhhccc----ccCHHHHHHHHHHHHHHHhhhccc-CCccCCC----CCCEEEEEECC-H-------
Confidence 11 12233333333333321 223667788889999999998876 5555443 35777666654 2
Q ss_pred CCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHH
Q 038499 431 NTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEE 510 (609)
Q Consensus 431 ~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~ee 510 (609)
.....+.+.|.+ .||.+.+-...+.|. ....+|++++..+|+||
T Consensus 339 ---------~~a~~~~~~L~~-~Gi~v~~i~~PtVp~--------------------------g~~~lRi~~~a~hT~ed 382 (401)
T d1fc4a_ 339 ---------VVAQKFARELQK-EGIYVTGFFYPVVPK--------------------------GQARIRTQMSAAHTPEQ 382 (401)
T ss_dssp ---------HHHHHHHHHHHH-TTEECCEECTTSSCT--------------------------TCEEEEEECCTTCCHHH
T ss_pred ---------HHHHHHHHHHHH-CCceEEeECCCCCCC--------------------------CCceEEEEECCCCCHHH
Confidence 134578888876 599987432222121 13569999999999999
Q ss_pred HHHHHHHHHHHHHhcc
Q 038499 511 FEFTLEALEFIAIYGQ 526 (609)
Q Consensus 511 id~ll~al~~v~~~~~ 526 (609)
||+++++|+++.++..
T Consensus 383 Id~~v~al~ev~~~lg 398 (401)
T d1fc4a_ 383 ITRAVEAFTRIGKQLG 398 (401)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhC
Confidence 9999999999988753
|
| >d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]
Probab=99.90 E-value=2.1e-22 Score=213.94 Aligned_cols=350 Identities=13% Similarity=0.012 Sum_probs=233.6
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccch
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
+.|+.+.+++.+.+...- +....|....+..++++.+.+++++.+|.+ +.++|++| +|+++++..++..+.
T Consensus 39 ~~p~~i~eal~~a~~~~~--~~~~~Y~~~~G~~~lReaiA~~~~~~~g~~~~p~~~I~it-~G~~~al~~~~~~l~---- 111 (418)
T d2r5ea1 39 HAPKYALNALAAAANSPD--PLANQYTRGFGHPRLVQALSKLYSQLVDRTINPMTEVLVT-VGAYEALYATIQGHV---- 111 (418)
T ss_dssp CCCHHHHHHHHHHHTCSC--GGGGSCCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEE-SHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHhCCC--ccCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCccceEEEc-CCCchhhhhhhhhcc----
Confidence 457889999988775321 111112233334566666666677777765 43589998 899999999998873
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC----------CCCCHHHHHHHHhhhccCCCce
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD----------GLLDIEALRSKLELYKDAKRPI 235 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~----------g~ld~e~L~~al~~~~~~~~~~ 235 (609)
++|| .|+++.+.|+.+...++..|++++.|+++.+ ..++++++.++.. .+++
T Consensus 112 -----------~~gd--~vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 173 (418)
T d2r5ea1 112 -----------DEGD--EVIIIEPFFDCYEPMVKAAGGIPRFIPLKPNKTGGTISSADWVLDNNELEALFN-----EKTK 173 (418)
T ss_dssp -----------CTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECEESCCSSCEEGGGEECCHHHHHHHCC-----TTEE
T ss_pred -----------cccc--ceeccccccchhhHHHHHcCCeEEEEEecccccccchhhhhhhhhHHHHhhhhh-----cccc
Confidence 8899 6999999999999999999999999987653 2467888888776 6899
Q ss_pred EEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCccc----ccCCCCC-CCCccEEEEcCCCCCCCC-CCc
Q 038499 236 LGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVE----IDVRSGQ-TDGYDAIFLSTHKFLGGP-GSP 306 (609)
Q Consensus 236 lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~~----id~~~~~-~~~~D~v~~S~hK~lggp-~g~ 306 (609)
++++++++||||.+.+. ++|+++|++||+++|.|+++...... ..+.... .....+++.|++|.++.| ..+
T Consensus 174 ~~~i~~p~NPtG~~~s~e~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGlRi 253 (418)
T d2r5ea1 174 MIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGWKI 253 (418)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGGCC
T ss_pred ceecCCcCccccccccHHHHHHHhhhhhcCCeeeecccchhhhccCCCccccccccccccceeeeeecCCccccCCCccc
Confidence 99999999999999885 56888999999999999997643221 1111110 112347778999999855 459
Q ss_pred EEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-------hcCHHH
Q 038499 307 GILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-------YIGHEV 379 (609)
Q Consensus 307 G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-------~~g~~~ 379 (609)
|++++++++ ++.+... ......+++...+...+ .++... ....+.
T Consensus 254 G~~~~~~~~--i~~~~~~------------------------~~~~~~~~~~~~q~a~~--~~l~~~~~~~~~~~~~~~~ 305 (418)
T d2r5ea1 254 GWAYGPEAL--LKNLQMV------------------------HQNCVYTCATPIQEAIA--VGFETELKRLKSPECYFNS 305 (418)
T ss_dssp EEEESCHHH--HHHHHHH------------------------HTTTTCSCCHHHHHHHH--HHHHHHHTTTTSTTSHHHH
T ss_pred ccccccchh--hhhhhhc------------------------ccccccccccchhhhcc--ccccccccccccchhhHHH
Confidence 999999887 2222100 11112334444443221 111111 112456
Q ss_pred HHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEecc
Q 038499 380 IKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARG 459 (609)
Q Consensus 380 i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~ 459 (609)
++++.+..++++.+.|.++ |+.+..| ..+++.|.-.+ ..... ..........+..++++.|.++.||.+.+
T Consensus 306 ~~~~~~~~r~~l~~~L~~~-g~~~~~P----~gg~f~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~ll~~~gV~v~P 376 (418)
T d2r5ea1 306 ISGELMAKRDYMASFLAEV-GMNPTVP----QGGYFMVADWS-SLDSK---VDLTQETDARKDYRFTKWMTKSVGLQGIP 376 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHT-TCEEEEC----SBSSEEEEECG-GGSTT---CCGGGCCCSSHHHHHHHHHHHHHSEECBC
T ss_pred HHHHHHHhhhhHHhhHhhc-CCcccCC----CceeEEEEEcc-ccccc---ccchhcccccCHHHHHHHHHHHCCEEEeC
Confidence 7777788888999999887 7887665 45677665443 21000 00000011234667888888888999999
Q ss_pred CcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 460 GCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 460 G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
|..|........ .++|+|||+. .++|+++..+++|++++.
T Consensus 377 G~~F~~~~~~~~----------------------g~~~iRis~~--~~~e~l~~a~~rl~~~lg 416 (418)
T d2r5ea1 377 PSAFYSEPNKHL----------------------GEDFVRYCFF--KKDENLQKAAEILRKWKG 416 (418)
T ss_dssp GGGGSCGGGHHH----------------------HTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred chhhCCCCCccC----------------------CCCEEEEEec--CCHHHHHHHHHHHHHHHc
Confidence 988864322211 1589999995 488999999999988763
|
| >d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 5-aminolevulinate synthase species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.90 E-value=1.8e-22 Score=211.24 Aligned_cols=329 Identities=13% Similarity=0.106 Sum_probs=228.2
Q ss_pred hHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHH
Q 038499 90 LRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILR 169 (609)
Q Consensus 90 ~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (609)
.+.+.++..+.+..+ +.. .+.+..-.+.....+++++.+++++|.+. .++|. +|..+++..+.....
T Consensus 61 ~p~v~~a~~~al~~y-G~g-s~~Sr~~~G~~~~h~~LE~~lA~~~g~e~--all~~-sG~~An~~~i~~l~~-------- 127 (396)
T d2bwna1 61 HPVVLAAMHEALEAV-GAG-SGGTRNISGTTAYHRRLEAEIAGLHQKEA--ALVFS-SAYNANDATLSTLRV-------- 127 (396)
T ss_dssp CHHHHHHHHHHHHHH-CSC-CCSBTTTBCCBHHHHHHHHHHHHHTTCSE--EEEES-CHHHHHHHHHHHHHH--------
T ss_pred CHHHHHHHHHHHHHh-CCC-ccccccccCCchHHHHHHHHHHHHhCCCc--eeeee-cchHHHHHHHHHHhc--------
Confidence 356777777777653 332 22344444567788999999999999963 46664 899987665543211
Q ss_pred HHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccc
Q 038499 170 EKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY 249 (609)
Q Consensus 170 ~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~ 249 (609)
..++| +|+.+...|.|....++..+++++.++.+ |++++++.++... ..+.++|++..+.+++|.+
T Consensus 128 ------~~~~d--~i~~D~~~Hasi~~g~~ls~a~~~~f~Hn-----d~~~l~~l~~~~~-~~~~~~iv~egvySmdGd~ 193 (396)
T d2bwna1 128 ------LFPGL--IIYSDSLNHASMIEGIKRNAGPKRIFRHN-----DVAHLRELIAADD-PAAPKLIAFESVYSMDGDF 193 (396)
T ss_dssp ------HSTTC--EEEEETTCCHHHHHHHHHSCCCEEEECTT-----CHHHHHHHHHHSC-TTSCEEEEEESBCTTTCCB
T ss_pred ------ccCCC--ceeehhhhhhccchhhhccccCceEeecc-----hHHHhhhHHhhhc-ccCceeEEEEeeccCcccc
Confidence 25677 88889999999999999999999998765 7888888776432 2456799999999999999
Q ss_pred cCHHHHHHHHHHhCCeEEEeccccCCcccccCCCC-----CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCC
Q 038499 250 SDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSG-----QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPS 324 (609)
Q Consensus 250 ~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~-----~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~ 324 (609)
.|+++|.+++++||+++++|+||++|...-+-... ....+|+++.|+.|.+|+.+ |++..+++.. +.+.-.
T Consensus 194 apl~~l~~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~~~~~~~~~~di~~gTlsKa~g~~G--g~v~~~~~~i--~~l~~~ 269 (396)
T d2bwna1 194 GPIKEICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAYGVFG--GYIAASARMV--DAVRSY 269 (396)
T ss_dssp CCHHHHHHHHHHHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTTCSCC--EEEEECHHHH--HHHHHH
T ss_pred cccHhHHHHhhhhcceeeeccceeeeeeccccccchhhcCCceeeeeeeecccccccccc--cccchhHHHH--HHHHhh
Confidence 99999999999999999999999988654322110 01257999999999999655 7888888772 222100
Q ss_pred ccCCCceEeeccccccccccccccccccc-CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 038499 325 TCGGGTVNYVNGFNEKDTLYLEDIEERES-GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKI 403 (609)
Q Consensus 325 ~~ggg~v~~~~~~~~~~~~~~~~~~~r~~-~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v 403 (609)
+. ...+. +-+|..++.+.+++++.. ....+..+++.+.+.+++.+.+..+ ++.+
T Consensus 270 --~~--------------------~~ifStalpp~~~aa~~~al~i~~--~~~~~~~r~~l~~~~~~~~~~l~~~-g~~~ 324 (396)
T d2bwna1 270 --AP--------------------GFIFSTSLPPAIAAGAQASIAFLK--TAEGQKLRDAQQMHAKVLKMRLKAL-GMPI 324 (396)
T ss_dssp --CH--------------------HHHTSBCCCHHHHHHHHHHHHHHT--SHHHHHHHHHHHHHHHHHHHHHHHH-TCCB
T ss_pred --cc--------------------hhhhcccCcHHHHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHhc-CCCc
Confidence 00 01111 223455555556655542 1123445566667788888888765 5555
Q ss_pred eCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHH
Q 038499 404 LGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIR 483 (609)
Q Consensus 404 ~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~ 483 (609)
... ..||+.+.+.. + .....+++.|++++||.+.+-...+.|.
T Consensus 325 ~~~----~spIvpv~ig~-~----------------~~~~~~a~~lL~e~Gi~v~~i~~PtVp~---------------- 367 (396)
T d2bwna1 325 IDH----GSHIVPVVIGD-P----------------VHTKAVSDMLLSDYGVYVQPINFPTVPR---------------- 367 (396)
T ss_dssp CCC----SSSCEEEECCC-H----------------HHHHHHHHHHHHHHCEECCEECTTTSCT----------------
T ss_pred CCC----CCCEEEEEeCC-H----------------HHHHHHHHHHHHhCCEEEEEECCCcCCC----------------
Confidence 433 45788777654 2 1355677776555799987544333221
Q ss_pred HHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 484 SAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 484 ~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
....+|++++..+|++|||+++++|+++
T Consensus 368 ----------g~~rlRi~lsa~ht~edId~l~~~L~~i 395 (396)
T d2bwna1 368 ----------GTERLRFTPSPVHDLKQIDGLVHAMDLL 395 (396)
T ss_dssp ----------TCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred ----------CCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence 1367999999999999999999999875
|
| >d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystalysin species: Treponema denticola [TaxId: 158]
Probab=99.90 E-value=2.5e-22 Score=211.68 Aligned_cols=360 Identities=11% Similarity=-0.017 Sum_probs=227.2
Q ss_pred HHHHHHHhhccCCC-ccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHH
Q 038499 53 KKLTWLQSQIIGKN-AEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIK 131 (609)
Q Consensus 53 ~~~~~~r~~~~g~~-~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia 131 (609)
.+|+.+.+.....+ ..++-..|.++ -|+|+.|.+++.+.+..- ... |..+ ..++++.+.++++
T Consensus 17 ~k~~~~~~~~~~~g~~vi~l~~g~pd---------f~~p~~v~~al~~~~~~~----~~~-Y~~g--~~~Lr~aia~~~~ 80 (394)
T d1c7na_ 17 LKWDLMYSQNPEVGNEVVPLSVADME---------FKNPPELIEGLKKYLDET----VLG-YTGP--TEEYKKTVKKWMK 80 (394)
T ss_dssp HHHHHHHHHCTTCCTTCCCCCSSSCS---------SCCCHHHHHHHHHHHHHC----CCS-SBCC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHhcCCCeEEccCCCCC---------CCCCHHHHHHHHHHHhCC----CcC-CCCC--CHHHHHHHHHHHH
Confidence 35677776654322 12333333221 367888999998877531 111 2112 2345555566666
Q ss_pred HHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEe
Q 038499 132 KCLGGG--QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIG 209 (609)
Q Consensus 132 ~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~ 209 (609)
+..|.+ ++ +|++| +|+++++..++.++ ++||| .|++.++.|+.+....+..|++.+.++
T Consensus 81 ~~~g~~~~~~-~I~vt-~G~~~al~~~~~~~---------------~~pgd--~vi~~~p~~~~~~~~~~~~g~~~v~~~ 141 (394)
T d1c7na_ 81 DRHQWDIQTD-WIINT-AGVVPAVFNAVREF---------------TKPGD--GVIIITPVYYPFFMAIKNQERKIIECE 141 (394)
T ss_dssp HHHCCCCCGG-GEEEE-SSHHHHHHHHHHHH---------------CCTTC--EEEECSSCCTHHHHHHHTTTCEEEECC
T ss_pred HhcCCCCCCc-ceEee-ccchhhhhhhhccc---------------ccccc--ccccccCcccchhhHHhhhhhcccccc
Confidence 666654 44 89998 89999999988877 48999 688888888888888888899988887
Q ss_pred cCC---CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCccc----c
Q 038499 210 LDD---DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVE----I 279 (609)
Q Consensus 210 ~~~---~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~~----i 279 (609)
... .+.+|.+.++.++.. ++++++++++++||||.+.+. ++|+++|++|++++|+|+++..-... .
T Consensus 142 ~~~~~~~~~~d~~~~~~~~~~----~~~~~i~l~~P~NPTG~v~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~ 217 (394)
T d1c7na_ 142 LLEKDGYYTIDFQKLEKLSKD----KNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHT 217 (394)
T ss_dssp CEEETTEEECCHHHHHHHHTC----TTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCC
T ss_pred cccccccccchhhhhhhhhcc----ccceEEEecccccccceeccHHHhhhhhccccccceeEeccccccccccCCcccc
Confidence 643 346899998888764 579999999999999999884 56889999999999999997632111 0
Q ss_pred cCCCC--CCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 280 DVRSG--QTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 280 d~~~~--~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
..... .....-+++.|++|.++.| .++|++++.+..+. +.+... ........
T Consensus 218 ~~~~~~~~~~~~~i~~~s~SK~~~~~G~R~g~~~~~~~~i~-~~~~~~------------------------~~~~~~~~ 272 (394)
T d1c7na_ 218 VFQSIDEQLADKTITFTAPSKTFNIAGMGMSNIIIKNPDIR-ERFTKS------------------------RDATSGMP 272 (394)
T ss_dssp CGGGSCHHHHTTEEEEECSHHHHTCGGGCCEEEECCCHHHH-HHHHHH------------------------HHHTTCCC
T ss_pred chhhhhcccccceeecccccccccccccccccccccChhhh-hhhhhh------------------------hhhccccc
Confidence 00000 0012357778999998744 34788888775521 111000 00001112
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC-CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 357 PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP-NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~-~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
....+.+ ++...........+.+.+..++.++.+.+.++. .+++++..+ ..+++.|.-.+ ..
T Consensus 273 ~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p----~g~~~~~~~~~-~~----------- 335 (394)
T d1c7na_ 273 FTTLGYK-ACEICYKECGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLI----EGTYLQWIDFR-AL----------- 335 (394)
T ss_dssp CCHHHHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCC----SBSSEEEEECG-GG-----------
T ss_pred cccccch-hhhhhhcchhhhhcccccccchhhhhhhhhhhccccceeecCC----CceeEEEEECC-CC-----------
Confidence 2222221 111111111112344555555556666665543 356655433 34566665443 21
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTL 515 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll 515 (609)
..+..++++.|.+++||.+.+|..|..+ .++++|||++ .++++++..+
T Consensus 336 ---~~~~~~~~~~Ll~~~gV~v~pG~~Fg~~---------------------------~~~~iRis~~--~~~e~i~eal 383 (394)
T d1c7na_ 336 ---KMDHKAMEEFMIHKAQIFFDEGYIFGDG---------------------------GIGFERINLA--APSSVIQESL 383 (394)
T ss_dssp ---CCCHHHHHHHHHHTTCCCCEEGGGGCGG---------------------------GTTEEEEECC--SCHHHHHHHH
T ss_pred ---CCCHHHHHHHHHHhCCEEEEcchhhCCC---------------------------CCCEEEEEEe--CCHHHHHHHH
Confidence 1467889988888889999999877521 2589999996 5788899999
Q ss_pred HHHHHHHHhc
Q 038499 516 EALEFIAIYG 525 (609)
Q Consensus 516 ~al~~v~~~~ 525 (609)
+.|+++++++
T Consensus 384 ~rl~~~l~~L 393 (394)
T d1c7na_ 384 ERLNKALKDL 393 (394)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 9999888764
|
| >d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Histidinol-phosphate aminotransferase HisC species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=7.5e-22 Score=203.27 Aligned_cols=311 Identities=16% Similarity=0.038 Sum_probs=206.6
Q ss_pred CceEEecCCCCC-CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHH
Q 038499 76 RRLTYADHTASG-RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAA 152 (609)
Q Consensus 76 ~~~vyld~~a~g-~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaa 152 (609)
+++|||+-+.+. +.|+.+.+++.+.+.... .. ++... ...++|+.++++++.. +.++|++| +|++++
T Consensus 19 ~d~~~l~~~enp~~~p~~i~~~~~~~~~~~~----~~-~yp~~----g~~~Lr~aia~~~~~~~v~~d~I~it-~G~~~~ 88 (334)
T d2f8ja1 19 RDKTYLALNENPFPFPEDLVDEVFRRLNSDA----LR-IYYDS----PDEELIEKILSYLDTDFLSKNNVSVG-NGADEI 88 (334)
T ss_dssp CCSEECSSCCCSSCCCHHHHHHHHHHCCTTG----GG-SCCCS----SCHHHHHHHHHHHTCSSCCGGGEEEE-EHHHHH
T ss_pred CCceEEECCCCCCCCCHHHHHHHHHHhhcch----hc-CCCCC----CcHHHHHHHHHHhcccCCCcceEEec-CcchhH
Confidence 579999866543 667788888887775311 00 11111 1356888888888643 22489998 899998
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
|..+++ ++| .|++.++.|+.+...++..|++++.|++++++..+ ++.. +
T Consensus 89 l~~l~~-------------------~~d--~v~i~~P~y~~~~~~~~~~g~~~v~v~~~~~~~~~-----~~~~-----~ 137 (334)
T d2f8ja1 89 IYVMML-------------------MFD--RSVFFPPTYSCYRIFAKAVGAKFLEVPLTKDLRIP-----EVNV-----G 137 (334)
T ss_dssp HHHHHH-------------------HSS--EEEECSSCCHHHHHHHHHHTCCEEECCCCTTSCCC-----CCCC-----C
T ss_pred HHHHhh-------------------hcc--ccccccccccccccchhccCCcccccccccccccc-----cccc-----c
Confidence 887654 356 58888889999998999999999999998776543 1122 5
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEE
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLM 311 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~ 311 (609)
+++++++++|+||||.+.+.++|.++ .++++++++|+++.................-+++.|++|.++.|+ .+|++++
T Consensus 138 ~~~~l~l~nP~NPtG~~~s~~~l~~~-~~~~~~ii~Dd~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~R~G~~~~ 216 (334)
T d2f8ja1 138 EGDVVFIPNPNNPTGHVFEREEIERI-LKTGAFVALDEAYYEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQRVGYVVA 216 (334)
T ss_dssp TTEEEEEESSCTTTCCCCCHHHHHHH-HTTTCEEEEECTTGGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTTCEEEEEE
T ss_pred cceEEEecccccccceeecHHHhhcc-ccceeEEeecccchhhcccccccccccCceEEEEecCccccchhhhhhhhccc
Confidence 78999999999999999998888775 457999999988543211111111111234578889999988664 6999999
Q ss_pred echhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERA 391 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~ 391 (609)
++++. ..+... +...+.+...+.+ +.+ ++......+...++.++.++++
T Consensus 217 ~~~~i--~~l~~~--------------------------~~~~~~s~~~~~~--a~~-~l~~~~~~~~~~~~~~~~r~~l 265 (334)
T d2f8ja1 217 SEKFI--DAYNRV--------------------------RLPFNVSYVSQMF--AKV-ALDHREIFEERTKFIVEERERM 265 (334)
T ss_dssp CHHHH--HHHHHH--------------------------SCTTCSCHHHHHH--HHH-HHHTHHHHHHHHHHHHHHHHHH
T ss_pred chHHH--HHHHHh--------------------------hcccccchhhhhh--ccc-ccccccchhhHHHHHHHHHHHH
Confidence 98883 222110 0001111222211 111 2223333455666777778888
Q ss_pred HHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhh
Q 038499 392 LERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHL 471 (609)
Q Consensus 392 ~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~l 471 (609)
.+.|+++ |+++..+ ..+++++.+.. .+..++.+.|.+ .||.+++.
T Consensus 266 ~~~L~~~-g~~~~~~----~g~f~~~~~~~------------------~~~~~~~~~L~~-~GI~vr~~----------- 310 (334)
T d2f8ja1 266 KSALREM-GYRITDS----RGNFVFVFMEK------------------EEKERLLEHLRT-KNVAVRSF----------- 310 (334)
T ss_dssp HHHHHHH-TCEECCC----CSSEEEEECCH------------------HHHHHHHHHHHH-TTEECEEE-----------
T ss_pred HHHHHHC-CCeECCC----CceEEEEECCC------------------CCHHHHHHHHHH-CCCEECCC-----------
Confidence 8888887 7888754 23443333322 256788888866 59998731
Q ss_pred cCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 472 LDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 472 l~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
++++|||++ +.+|+++++++|+.
T Consensus 311 -----------------------~~~vRis~g---~~ee~~~l~~~l~~ 333 (334)
T d2f8ja1 311 -----------------------REGVRITIG---KREENDMILRELEV 333 (334)
T ss_dssp -----------------------TTEEEEECC---CHHHHHHHHHHHHH
T ss_pred -----------------------CCeEEEEcC---CHHHHHHHHHHHhc
Confidence 379999997 88999999999875
|
| >d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Thermotoga maritima [TaxId: 2336]
Probab=99.89 E-value=2.2e-21 Score=202.78 Aligned_cols=323 Identities=14% Similarity=0.030 Sum_probs=217.8
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCC-CCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQ-EDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~-~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
++|+.+.+++.+.+.+- .. .|....+..++++.+.+++.+..|.+. .++|++| +|++.++..++.++.
T Consensus 41 ~~p~~i~~~~~~~~~~~----~~-~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~~t-~G~~~al~~~~~~l~----- 109 (375)
T d1o4sa_ 41 PTPEPVVEEAVRFLQKG----EV-KYTDPRGIYELREGIAKRIGERYKKDISPDQVVVT-NGAKQALFNAFMALL----- 109 (375)
T ss_dssp CCCHHHHHHHHHHHTTC----CC-CCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEE-SHHHHHHHHHHHHHC-----
T ss_pred CCCHHHHHHHHHHHhcC----Cc-CCCCCcCCHHHHHHHHhhhhhcccccccccccccc-CcHHHHHHHHHHHHh-----
Confidence 45788888888876531 01 122222345556666666666666542 2389998 899999999988874
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
++|| .|++..+.|+.+.......+..++.++.+. ++.+|.+.++.... ++++++++++|+|
T Consensus 110 ----------~~gd--~vlv~~P~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~nP~N 172 (375)
T d1o4sa_ 110 ----------DPGD--EVIVFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSLEEVEGLLV-----GKTKAVLINSPNN 172 (375)
T ss_dssp ----------CTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECCGGGTTCCCHHHHHHTCC-----TTEEEEEEESSCT
T ss_pred ----------CCCC--EEEEccCccccchhhhhccccccccccccccccccchhHHHHHhhc-----cCccEEEEeCCCC
Confidence 7898 688888899988888888999998888765 56788888887766 6889999999999
Q ss_pred ccccccC---HHHHHHHHHHhCCeEEEeccccCCcccccCCC----CCCCCccEEEEcCCCCCCCC-CCcEEEEEechhh
Q 038499 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVEIDVRS----GQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALY 316 (609)
Q Consensus 245 ~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~id~~~----~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~ 316 (609)
|||.+.+ +++|+++|++|+++++.|+++........... ....+.-+++.|++|.++.| ..+|+++.+++..
T Consensus 173 PTG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~R~G~~~~~~~~~ 252 (375)
T d1o4sa_ 173 PTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGWRVGYLISSEKVA 252 (375)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGGCCEEEECCHHHH
T ss_pred CccCCCCHHHHHHHHHhHHHcCCceehHhhhccccccccccccccccCCCCCEEEEeechhhccCCccccccccccccch
Confidence 9999987 55688889999999999998664322111100 11124468888999999844 4599999998872
Q ss_pred ccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhC
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLL 396 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~ 396 (609)
..+... ........+...+. .+... .........+..++.++.+.+.|+
T Consensus 253 --~~~~~~------------------------~~~~~~~~~~~~~~--~~~~~---~~~~~~~~~~~~~~r~~~~~~~l~ 301 (375)
T d1o4sa_ 253 --TAVSKI------------------------QSHTTSCINTVAQY--AALKA---LEVDNSYMVQTFKERKNFVVERLK 301 (375)
T ss_dssp --HHHHHH------------------------HHHHTCSCCHHHHH--HHHHH---TTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --hhhhhh------------------------hccccccccccchh--hhhhh---cccchhhhHHHHHHHHHHHHHHHH
Confidence 221100 00001111122221 11111 123345556667777788888887
Q ss_pred CCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCCh
Q 038499 397 PNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDE 476 (609)
Q Consensus 397 ~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~ 476 (609)
+. ++++..+ ..+++.|.-.+ . +..+++..|.+++||.+++|..|.
T Consensus 302 ~~-g~~~~~p----~gg~f~~~~~~-~-----------------~~~~~~~~ll~~~gV~v~pG~~F~------------ 346 (375)
T d1o4sa_ 302 KM-GVKFVEP----EGAFYLFFKVR-G-----------------DDVKFCERLLEEKKVALVPGSAFL------------ 346 (375)
T ss_dssp HT-TCCCCCC----SBSSEEEEECS-S-----------------CHHHHHHHHHHHHCEECEEGGGGT------------
T ss_pred hc-CceEecC----CccEEEEEECC-C-----------------CHHHHHHHHHHhCCEEEEEccccC------------
Confidence 75 7776654 34565555444 1 345566666666899999987664
Q ss_pred hHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 477 AQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.+||+||+++ .++++++..++.|+++++
T Consensus 347 -----------------~~g~iRis~~--~~~e~l~~al~rl~~~l~ 374 (375)
T d1o4sa_ 347 -----------------KPGFVRLSFA--TSIERLTEALDRIEDFLN 374 (375)
T ss_dssp -----------------CTTEEEEECC--SCHHHHHHHHHHHHHHHT
T ss_pred -----------------CCCeEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 2589999996 588999999999988764
|
| >d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Ornithine decarboxylase major domain domain: Ornithine decarboxylase major domain species: Lactobacillus sp., strain 30a [TaxId: 1591]
Probab=99.89 E-value=3.2e-22 Score=215.31 Aligned_cols=242 Identities=13% Similarity=0.050 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
..+.++++.+|+++|++ +.+|+.|||+++...++.++ +++|| +||++..+|.|+..+++.
T Consensus 66 ~~i~eae~~~A~~~ga~---~a~f~~~Gtt~~n~a~i~a~---------------~~~gd--~Vi~~~~~H~Sv~~~~~~ 125 (462)
T d1c4ka2 66 GPAVAAEKHAARVYNAD---KTYFVLGGSSNANNTVTSAL---------------VSNGD--LVLFDRNNHKSVYNSALA 125 (462)
T ss_dssp THHHHHHHHHHHHTTCS---EEEEESSHHHHHHHHHHHHH---------------CCTTC--EEEEETTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCC---eEEEECCchHHHHHHHHHHh---------------cCCCC--eEEecccchHHHHHHHHH
Confidence 45788999999999985 56777799998777766655 48999 799999999999988865
Q ss_pred c-CceEEE--EecCCCC--------CCCHHHHHHHHhhh----ccCCCceEEEEecccCccccccCHHHHHHHHHHhCCe
Q 038499 201 S-LAEVVE--IGLDDDG--------LLDIEALRSKLELY----KDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGF 265 (609)
Q Consensus 201 ~-G~~vv~--v~~~~~g--------~ld~e~L~~al~~~----~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~ 265 (609)
+ +..+++ ++.++.| .++.+.++..+.+. ....+++++++.+.+|.+|.+.|+++|+++||+||++
T Consensus 126 l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~dl~~I~~ia~~~g~~ 205 (462)
T d1c4ka2 126 MAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDY 205 (462)
T ss_dssp TTCCEEEEECEEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSE
T ss_pred HhcCCceeeecccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhhHHHHHHHHHHcCCE
Confidence 4 444333 4445443 34444444333210 0114677778888899999999999999999999999
Q ss_pred EEEeccccCCcccccCCCC----------CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeec
Q 038499 266 ACFDFAASGPYVEIDVRSG----------QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVN 335 (609)
Q Consensus 266 vivD~A~~~~~~~id~~~~----------~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~ 335 (609)
+++|+||+++....+..+. ...++|++++|+||++|++.+.+++..++.. +..... .+.
T Consensus 206 l~vD~A~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~~g~ll~~~~~~--~~~~~~---~~~------ 274 (462)
T d1c4ka2 206 IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSH--IKGQLR---YCD------ 274 (462)
T ss_dssp EEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGG--GTTSTT---CCC------
T ss_pred EEEechhhccccccCcCCcchhhccccccccCCccEEEEecCcccccccceEEEEecccc--ccccch---hhh------
Confidence 9999999887665443221 0125699999999999988876677777766 222111 111
Q ss_pred ccccccccccccccccccCCChhHHHH--HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce
Q 038499 336 GFNEKDTLYLEDIEERESGGTPQVIQM--IRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI 401 (609)
Q Consensus 336 ~~~~~~~~~~~~~~~r~~~gtp~i~~~--~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i 401 (609)
...........+.++|+...+ +.++..+. +..+.+.+.++..++++++++++.++++.
T Consensus 275 ------~~~~~~~~~~~~t~sp~~~~~asl~~a~~~~--~~~~g~~l~~~~~~~a~~~r~~l~~~~~~ 334 (462)
T d1c4ka2 275 ------HKHFNNSFNLFMSTSPFYPMYAALDVNAAMQ--EGEAGRKLWHDLLITTIEARKKLIKAGSM 334 (462)
T ss_dssp ------HHHHHHHHHHHSCSSCCHHHHHHHHHHHHHH--SHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred ------HHHHHHhhhhcccCCchHHHHHHHHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 111111122334555554433 34444433 22234556667777888888888766544
|
| >d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Apple (Malus domestica) [TaxId: 3750]
Probab=99.89 E-value=5e-21 Score=204.02 Aligned_cols=358 Identities=13% Similarity=0.067 Sum_probs=225.3
Q ss_pred eEEecCCCCCCChHHHHHHHHHhhcCCc--cCCCC-----CCchhhHHHHHHHHHHHHHHHHHhC----CCCCCcEEEeC
Q 038499 78 LTYADHTASGRSLRYIENYIINNVLPFY--GNTHT-----CDSYVGQHTTNMVHEASNYIKKCLG----GGQEDAMIFCG 146 (609)
Q Consensus 78 ~vyld~~a~g~~~~~v~~ai~~~~~~~~--~n~~~-----~~~~~~~~~~~~~~e~r~~ia~~~g----~~~~~~vift~ 146 (609)
+|-|.-+.+..+...+.+.+.+...... ..... ..|....+..++++.+.+.+.+.+| .+++ +|++|
T Consensus 38 ~i~l~~~en~l~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~pe-~I~it- 115 (431)
T d1m7ya_ 38 IIQMGLAENQLCFDLLESWLAKNPEAAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPN-HLVLT- 115 (431)
T ss_dssp BEECSSCCCCSCHHHHHHHHHHCCTGGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGG-GEEEE-
T ss_pred EEEeecccccccHHHHHHHHHhCCchhhhhhhhhhccHHhcCCcCCcCcHHHHHHHHHHHHHHhCCCCCCCcc-eEEEC-
Confidence 6777777777777777777765332110 00000 0010111123344444444444444 3455 89998
Q ss_pred ChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH-cCceEEEEecCC--CCCCCHHHHHH
Q 038499 147 SGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ-SLAEVVEIGLDD--DGLLDIEALRS 223 (609)
Q Consensus 147 sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-~G~~vv~v~~~~--~g~ld~e~L~~ 223 (609)
+|++++|..++.++. +||| .|+++.+.|+.+...++. .|++++.++.+. +..+|++++++
T Consensus 116 ~G~~~al~~~~~~l~---------------~pGd--~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~l~~~~~~~ 178 (431)
T d1m7ya_ 116 AGATSANETFIFCLA---------------DPGE--AVLIPTPYYPGFDRDLKWRTGVEIVPIHCTSSNGFQITETALEE 178 (431)
T ss_dssp EHHHHHHHHHHHHHC---------------CTTC--EEEEEESCCTTHHHHTTTTTCCEEEEEECCGGGTSCCCHHHHHH
T ss_pred CCHHHHHHHHHHHhc---------------CCCC--EEEEeCCCchhHHHHHHHhcCceeccccccchhcccccHHHhhh
Confidence 899999999998874 7999 699999999888877764 589999999875 35789999998
Q ss_pred HHhhhc-cCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCC----------C
Q 038499 224 KLELYK-DAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSG----------Q 285 (609)
Q Consensus 224 al~~~~-~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~----------~ 285 (609)
++.+.. ...+++++++++|+||||.+.+ +++|+++|++||+++|+|++++... ..+++.+. .
T Consensus 179 ~~~~~~~~~~~~~~i~~~nP~NPtG~~~s~~~l~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~ 258 (431)
T d1m7ya_ 179 AYQEAEKRNLRVKGVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSE 258 (431)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHTTTTTCSSSSS
T ss_pred hhhhhhhccCcceEEEecCccccccccccccccccccccccccCcceeecccccccccCCCCCCCHHHHhhhcccccccc
Confidence 886432 2347889999999999999987 6678999999999999999975311 01111000 0
Q ss_pred CCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHH-HH
Q 038499 286 TDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ-MI 363 (609)
Q Consensus 286 ~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~-~~ 363 (609)
..+.-+++.|++|.+|.| ..+|+++.+++... .... ......+++...+ .+
T Consensus 259 ~~~~vi~~~s~SK~~~~~G~RiG~~~~~~~~i~--~~~~-------------------------~~~~~~~~~~~~~~~~ 311 (431)
T d1m7ya_ 259 VWQRVHVVYSLSKDLGLPGFRVGAIYSNDDMVV--AAAT-------------------------KMSSFGLVSSQTQHLL 311 (431)
T ss_dssp GGGGEEEEEESSSSSCCGGGCEEEEEESCHHHH--HHHH-------------------------HHGGGSCCCHHHHHHH
T ss_pred cCceEEEEecCcccccCCCCccceeccchhhhH--HHHH-------------------------HHhccccccccccchh
Confidence 001237778999999855 35899999887621 1100 0011122222222 22
Q ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChH
Q 038499 364 RAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGP 443 (609)
Q Consensus 364 ~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~ 443 (609)
.+.+..........+..+++.++.++.+.+.|++ +|+.+..+ ..+++.|.-.+.... .....+..
T Consensus 312 ~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~-~gi~~~~p----~gg~f~w~~l~~~~~----------~~~~~~~~ 376 (431)
T d1m7ya_ 312 SAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQK-SGISCLNG----NAGLFCWVDMRHLLR----------SNTFEAEM 376 (431)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TTCEECCC----CSSSEEEEECGGGSS----------SSSHHHHH
T ss_pred hhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhc-CCcEEecC----CceeEEEEECccccc----------cCcccCHH
Confidence 2221111000112455666677777888888877 48988765 345666654430110 11112344
Q ss_pred HHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 444 FVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 444 ~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
++++.|.+++||.+.+|..|... .++|+||+++. .++++++..++.|+++++
T Consensus 377 ~l~~~ll~~~gV~v~PG~~F~~~---------------------------~~~~~Ri~~a~-~~e~~l~~al~rL~~~l~ 428 (431)
T d1m7ya_ 377 ELWKKIVYEVHLNISPGSSCHCT---------------------------EPGWFRVCFAN-LPERTLDLAMQRLKAFVG 428 (431)
T ss_dssp HHHHHHHHTSCEECEEGGGGTCS---------------------------STTEEEEECSS-SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEeccccCCC---------------------------CCCEEEEEeCc-CCHHHHHHHHHHHHHHHH
Confidence 67777777789999999877521 26899999862 467889999999988876
Q ss_pred h
Q 038499 524 Y 524 (609)
Q Consensus 524 ~ 524 (609)
+
T Consensus 429 ~ 429 (431)
T d1m7ya_ 429 E 429 (431)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative aminotransferase TM1131 species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=7.6e-22 Score=209.66 Aligned_cols=313 Identities=15% Similarity=0.168 Sum_probs=208.2
Q ss_pred HHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHH
Q 038499 119 TTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL 196 (609)
Q Consensus 119 ~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~ 196 (609)
..++++.+.+++++..|.+ +.++|++| +|+++++..++.++. ++|| .|+++.+.|+.+..
T Consensus 82 ~~~LR~aia~~~~~~~g~~~~~~~~I~it-~G~~~al~~~~~~~~---------------~~Gd--~Vlv~~P~y~~~~~ 143 (420)
T d1vp4a_ 82 DPVLKQQILKLLERMYGITGLDEDNLIFT-VGSQQALDLIGKLFL---------------DDES--YCVLDDPAYLGAIN 143 (420)
T ss_dssp CHHHHHHHHHHHHHHHCCCSCCGGGEEEE-EHHHHHHHHHHHHHC---------------CTTC--EEEEEESCCHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCCHHHeEec-cchhhhHHHHHHhhh---------------cccc--ccccccccccchhH
Confidence 3455566666666666653 23489998 899999999988873 7898 69999999999988
Q ss_pred HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc----CCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEe
Q 038499 197 SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD----AKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFD 269 (609)
Q Consensus 197 ~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~----~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD 269 (609)
.++..|++++.++.++.+ +|++.++..+..... ...+.++++++++||||.+.+ +++|+++|++|++++|+|
T Consensus 144 ~~~~~g~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~s~~~~~~i~~~a~~~~i~ii~D 222 (420)
T d1vp4a_ 144 AFRQYLANFVVVPLEDDG-MDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVED 222 (420)
T ss_dssp HHHTTTCEEEEEEEETTE-ECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHhhhcccccccccc-cccchhhhhhhhhHHHhhccccceeeEecCCCCccchhhhhhhhhhhhhhhhccccccccc
Confidence 899999999999987655 688888776543111 123447788999999999977 467899999999999999
Q ss_pred ccccCCccc-ccCCC---CCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeeccccccccccc
Q 038499 270 FAASGPYVE-IDVRS---GQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYL 345 (609)
Q Consensus 270 ~A~~~~~~~-id~~~---~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~ 345 (609)
+++..-... ....+ ....+..+++.+++|+++....+|+++.++++ ++.+...
T Consensus 223 e~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~RiG~~~~~~~~--i~~l~~~--------------------- 279 (420)
T d1vp4a_ 223 DPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGLRIGMVAGSKEF--IRKIVQA--------------------- 279 (420)
T ss_dssp CSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGGCEEEEECCHHH--HHHHHHH---------------------
T ss_pred chhhhccccCcccccccccccccceeEEeccccccccccccccccccchh--hhhhhhh---------------------
Confidence 997532111 00000 01124457777889988633469999999887 3322110
Q ss_pred ccccccccCCChhHHHHHHHHHHHHHHHhc-------CHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEE
Q 038499 346 EDIEERESGGTPQVIQMIRAALAFWVKEYI-------GHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFN 418 (609)
Q Consensus 346 ~~~~~r~~~gtp~i~~~~~aal~~~~~~~~-------g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~ 418 (609)
......+++.+.+...+.. + .+.. -.+.+.++...+.+.+.+.+..+|++++..+ ..+++.|.
T Consensus 280 ---~~~~~~~~~~~~q~~~a~~-l--~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p----~gg~f~~~ 349 (420)
T d1vp4a_ 280 ---KQSADLCSPAITHRLAARY-L--ERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKS----EGGLFIWL 349 (420)
T ss_dssp ---HHHHHSSCCHHHHHHHHHH-H--HHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCC----SBSSEEEE
T ss_pred ---hhhccccCchhhhhhhhhh-c--ccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecC----CceEEEEE
Confidence 1112234445444332221 1 1111 0123344444455566666777889998766 34666666
Q ss_pred eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEE
Q 038499 419 IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWT 498 (609)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~i 498 (609)
..+ .. ++..++++.|.+ .||.+.+|+.|... +. .++++
T Consensus 350 ~~~-~~---------------~d~~~~~~~l~~-~gV~v~PG~~F~~~-~~------------------------~~~~i 387 (420)
T d1vp4a_ 350 TLP-EG---------------FDTWEMFEYAKR-KKVFYVPGRVFKVY-DE------------------------PSPSM 387 (420)
T ss_dssp ECC-TT---------------CCTTTTHHHHHH-HTEECEEGGGGCTT-CC------------------------CCSEE
T ss_pred ECC-CC---------------CCHHHHHHHHHH-CCeEEEechhhCCC-CC------------------------CCCEE
Confidence 554 21 355667777755 69999999877621 11 25899
Q ss_pred EEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 499 RISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 499 Rls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
|||++. .++++++..++.|++++++..
T Consensus 388 Rls~~~-~~~e~l~~a~~rL~~~l~~~~ 414 (420)
T d1vp4a_ 388 RLSFCL-PPDEKIVEGIKRLREVVLEYG 414 (420)
T ss_dssp EEECSS-SCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEeCc-CCHHHHHHHHHHHHHHHHHhh
Confidence 999963 578999999999999887644
|
| >d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) species: Tomato (Lycopersicon esculentum) [TaxId: 4081]
Probab=99.88 E-value=7.9e-21 Score=202.27 Aligned_cols=358 Identities=13% Similarity=0.060 Sum_probs=219.0
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCC------CchhhHHHHHHHHHHHHHHHHHhC----CCCCCcEEEeC
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTC------DSYVGQHTTNMVHEASNYIKKCLG----GGQEDAMIFCG 146 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~------~~~~~~~~~~~~~e~r~~ia~~~g----~~~~~~vift~ 146 (609)
.+|-|.-+.+..+...+.+.+.+............ .|....+..++++.+.+++.+.+| .+++ +|++|
T Consensus 37 G~i~l~~aen~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~~~~e-~Ivit- 114 (428)
T d1iaya_ 37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPE-RVVMA- 114 (428)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTT-SCEEE-
T ss_pred ceEEeecccCccchHHHHHHHHhCCchhhhHhHhhhCHHhccCcCCcchHHHHHHHHHHHHHHhCCCCCCChh-hEEEc-
Confidence 47778777777888888888876433211100000 000111223333333344444444 3454 89998
Q ss_pred ChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH-cCceEEEEecCC--CCCCCHHHHHH
Q 038499 147 SGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ-SLAEVVEIGLDD--DGLLDIEALRS 223 (609)
Q Consensus 147 sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-~G~~vv~v~~~~--~g~ld~e~L~~ 223 (609)
+|+++++..++.++. .+|| .|+++.+.|+++...+.. .|++++.++.+. ++.+|+++++.
T Consensus 115 ~G~~~al~~~~~~l~---------------~~Gd--~Vlv~~P~y~~~~~~~~~~~g~~~v~v~~~~~~~~~~d~~~~~~ 177 (428)
T d1iaya_ 115 GGATGANETIIFCLA---------------DPGD--AFLVPSPYYPAFNRDLRWRTGVQLIPIHCESSNNFKITSKAVKE 177 (428)
T ss_dssp EHHHHHHHHHHHHHC---------------CTTC--EEEEESSCCTTHHHHTTTTTCCEEEEECCCTTTTTCCCHHHHHH
T ss_pred CCHHHHHHHHHHHhC---------------CCCC--EEEEccCCchHHHHHHHHhcCCeEEEeecccccccccccccccc
Confidence 899999999988874 8999 699999999888776664 589999999875 45789999887
Q ss_pred HHhhhc-cCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----cccc------CCC--CCCC
Q 038499 224 KLELYK-DAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEID------VRS--GQTD 287 (609)
Q Consensus 224 al~~~~-~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id------~~~--~~~~ 287 (609)
++.... ..++++++++++|+||||.+.+ +++|+++|++||+++|+|++++... .... ... ....
T Consensus 178 ~~~~~~~~~~~~~~~~l~nP~NPtG~~~s~~~~~~i~~~a~~~~~~vI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~ 257 (428)
T d1iaya_ 178 AYENAQKSNIKVKGLILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNK 257 (428)
T ss_dssp HHHHHHHTTCCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCT
T ss_pred hhhhhhccCCCceEEEEccCCCcccccccccccchhheeeccCcEEEEecccccccccCcccccccccccchhhcccccc
Confidence 664321 2357889999999999999987 5779999999999999999976311 0000 000 0011
Q ss_pred CccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHH-HH
Q 038499 288 GYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMI-RA 365 (609)
Q Consensus 288 ~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~-~a 365 (609)
...+++.|++|.++.|+ .+|+++..++.+ .+.+. ........+...+.. .+
T Consensus 258 ~~vi~~~s~SK~~~~~GlRiG~~~~~~~~l-~~~~~--------------------------~~~~~~~~~~~~~~~~~a 310 (428)
T d1iaya_ 258 DLVHIVYSLSKDMGLPGFRVGIIYSFNDDV-VNCAR--------------------------KMSSFGLVSTQTQYFLAA 310 (428)
T ss_dssp TSEEEEEESTTTSSCGGGCEEEEEESCHHH-HHHHH--------------------------HHHTTSCCCHHHHHHHHH
T ss_pred ceEEEEecCCCcccCCCcccccccccccch-hhhhh--------------------------hhhcccccccccccchhh
Confidence 23477889999887553 589999865541 11110 000001122222221 11
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHH
Q 038499 366 ALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFV 445 (609)
Q Consensus 366 al~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v 445 (609)
.+...-.-....+..+++.++.++.+.+.|+. +|+++..+ ..+++.|.-.+.... ........++
T Consensus 311 ~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~-~gi~~~~p----~gg~f~w~~l~~~~~----------~~~~~~~~~l 375 (428)
T d1iaya_ 311 MLSDEKFVDNFLRESAMRLGKRHKHFTNGLEV-VGIKCLKN----NAGLFCWMDLRPLLR----------ESTFDSEMSL 375 (428)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCBCCC----SSSSEEEEECGGGCS----------SSSHHHHHHH
T ss_pred hhhhhccccccccccccccchhHHHHHHHHHh-CCCEEecC----CcceEEEEECccccc----------cCCCCCHHHH
Confidence 11100000012344555566667778888865 47877654 345655554330110 0000123467
Q ss_pred HHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 446 ATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 446 ~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
++.|.+++||.+.+|..|... .++|+|||+. ..++++++..++.|++++.
T Consensus 376 ~~~Ll~~~gV~v~PG~~F~~~---------------------------~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~ 425 (428)
T d1iaya_ 376 WRVIINDVKLNVSPGSSFECQ---------------------------EPGWFRVCFA-NMDDGTVDIALARIRRFVG 425 (428)
T ss_dssp HHHHHHTSCEECEEGGGGTCS---------------------------SSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEcchhcCCC---------------------------CCCEEEEEeC-CCCHHHHHHHHHHHHHHHh
Confidence 777777789999999876421 3699999985 3467789999999988774
|
| >d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Putative methionine aminotransferase YdbL species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=2e-21 Score=203.75 Aligned_cols=331 Identities=11% Similarity=0.006 Sum_probs=224.9
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC--CCCcEEEeCChHHHHHHHHHHHhcccch
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG--QEDAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~--~~~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
++|+.+.+++.+.+.+- .. .|....+..++++.+.+++.+.+|.+ ++++|++| +|+++++..++.++.
T Consensus 39 ~~p~~i~~a~~~~~~~~----~~-~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt-~G~~~al~~~~~~l~---- 108 (382)
T d1u08a_ 39 DGPRYLQERLAHHVAQG----AN-QYAPMTGVQALREAIAQKTERLYGYQPDADSDITVT-AGATEALYAAITALV---- 108 (382)
T ss_dssp CCCHHHHHHHHHHHHTT----CC-SCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEE-SSHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHhcC----CC-CCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEec-cchHHHHHHHHhhcc----
Confidence 45788889888877531 11 12233334556666666666666764 33358888 899999999988874
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
++|| .|+++++.|+.+.......|+.++.++.+. .+.+|++++++++. ++++++++++++|
T Consensus 109 -----------~~gd--~vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~~~-----~~~~~i~l~~P~N 170 (382)
T d1u08a_ 109 -----------RNGD--EVICFDPSYDSYAPAIALSGGIVKRMALQPPHFRVDWQEFAALLS-----ERTRLVILNTPHN 170 (382)
T ss_dssp -----------CTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECCTTTCCCCHHHHHHHCC-----TTEEEEEEESSCT
T ss_pred -----------cccc--eEEEecccccchhhhhhhccccceecccccccccCCHHHHhhhhc-----cCccEEEECCCCc
Confidence 7888 699998999998888888999998888876 45789999999888 6899999999999
Q ss_pred ccccccCH---HHHHHHHHHhCCeEEEeccccCCccccc--CCCCC---CCCccEEEEcCCCCCCCC-CCcEEEEEechh
Q 038499 245 VTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVEID--VRSGQ---TDGYDAIFLSTHKFLGGP-GSPGILLMTKAL 315 (609)
Q Consensus 245 ~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~~id--~~~~~---~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~ 315 (609)
|||.+.+. ++|+++|.+++++++.|+.+........ ..... .....+++.|++|.++.| ..+|++++++++
T Consensus 171 PtG~v~~~~~~~~l~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~RiG~~v~~~~~ 250 (382)
T d1u08a_ 171 PSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGWKVGYCVAPAPI 250 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGGCCEEEECCHHH
T ss_pred ccccccccccchhhhhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcccchhhhccchh
Confidence 99999885 5577778889999999988553221110 00000 012347888999998756 459999998887
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERL 395 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L 395 (609)
+..+... ......+++...+.+.+ .++.......+.++.+.++.++.+.+.+
T Consensus 251 --~~~~~~~------------------------~~~~~~~~~~~~q~a~~--~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 302 (382)
T d1u08a_ 251 --SAEIRKV------------------------HQYLTFSVNTPAQLALA--DMLRAEPEHYLALPDFYRQKRDILVNAL 302 (382)
T ss_dssp --HHHHHHH------------------------HHHHTSSCCHHHHHHHH--HHHHHCTHHHHTHHHHHHHHHHHHHHHT
T ss_pred --HHHHHhh------------------------hcccccccccccccccc--cccccchHHHHHHHHHHHhhhhhhhhhh
Confidence 2222100 11122345555554322 2221122234566777777888888888
Q ss_pred CCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCC
Q 038499 396 LPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD 475 (609)
Q Consensus 396 ~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~ 475 (609)
... ++.+..+ ..+++.|.-.+ .. ...+..++++.|.+++||.+.+|..|....
T Consensus 303 ~~~-g~~~~~p----~gg~~~~~~~~-~~-------------~~~d~~e~~~~ll~e~gV~v~PG~~F~~~~-------- 355 (382)
T d1u08a_ 303 NES-RLEILPC----EGTYFLLVDYS-AV-------------STLDDVEFCQWLTQEHGVAAIPLSVFCADP-------- 355 (382)
T ss_dssp TSS-SCEECCC----CBSSEEEEECT-TT-------------CCSCHHHHHHHHHHHSCEECEEGGGGCSSC--------
T ss_pred ccC-CcEEecC----CceEEEEEecC-CC-------------CCCCHHHHHHHHHHHCCEEEEcchhhCCCC--------
Confidence 654 8888755 44666655444 11 124677888888777899999998775211
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
..++++|||+. .++|+++..++.|++
T Consensus 356 -----------------~~~~~~Ris~~--~~~e~l~~al~RL~~ 381 (382)
T d1u08a_ 356 -----------------FPHKLIRLCFA--KKESTLLAAAERLRQ 381 (382)
T ss_dssp -----------------CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred -----------------CCCCEEEEEEe--CCHHHHHHHHHHHhC
Confidence 02489999996 578888888887764
|
| >d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Kynurenine--oxoglutarate transaminase I species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.3e-21 Score=205.78 Aligned_cols=350 Identities=11% Similarity=-0.034 Sum_probs=226.8
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCC--CCcEEEeCChHHHHHHHHHHHhcccch
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQ--EDAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~--~~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
++|+.+.+++.+.+..- +....|....+..++++.+.+++.+.+|.+- +++|++| +|+++++..+++.+.
T Consensus 38 ~~p~~v~~a~~~al~~~---~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~it-~G~~~al~~~~~~l~---- 109 (418)
T d1w7la_ 38 PPPDFAVEAFQHAVSGD---FMLNQYTKTFGYPPLTKILASFFGELLGQEIDPLRNVLVT-VGGYGALFTAFQALV---- 109 (418)
T ss_dssp CCCHHHHHHHHHHTSSC---GGGGSCCCTTCCHHHHHHHHHHHHHHHTCCCCHHHHEEEE-SHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHHHHhCC---CcccCCCCCcCCHHHHHHHHHHHHHHhCCCCCcccceeec-cCcHHHHHHHHHhhc----
Confidence 55788999998877531 1000122222345556666666666667653 2379898 899999999988873
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC------------CCCCCHHHHHHHHhhhccCCC
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD------------DGLLDIEALRSKLELYKDAKR 233 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~------------~g~ld~e~L~~al~~~~~~~~ 233 (609)
.+|+ .|+++.+.++.+...+...|++++.++..+ +..+|.+++..... ++
T Consensus 110 -----------~~g~--~vlv~~p~~~~y~~~~~~~g~~~v~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~-----~~ 171 (418)
T d1w7la_ 110 -----------DEGD--EVIIIEPFFDCYEPMTMMAGGRPVFVSLKPGPIQNGELGSSSNWQLDPMELAGKFT-----SR 171 (418)
T ss_dssp -----------CTTC--EEEEEESCCTTHHHHHHHTTCEEEEEECEECC---CCSEEGGGEECCHHHHHHHCC-----TT
T ss_pred -----------cCCc--eeeccccccchhHHHHHHcCCEeeccccccccccccccccccCcccchhhhhcccc-----cc
Confidence 7888 799999999999989999999998887542 23567777777766 68
Q ss_pred ceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCc----ccccCCCCCC-CCccEEEEcCCCCCCCC-C
Q 038499 234 PILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPY----VEIDVRSGQT-DGYDAIFLSTHKFLGGP-G 304 (609)
Q Consensus 234 ~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~----~~id~~~~~~-~~~D~v~~S~hK~lggp-~ 304 (609)
++++++++++||||.+.+ +++|+++|++|++++|.|+++..-. ....+..... ....+++.|++|.++.| .
T Consensus 172 ~~~i~~~~p~NPtG~~~s~~~~~~i~~~a~~~~v~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~ 251 (418)
T d1w7la_ 172 TKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW 251 (418)
T ss_dssp EEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGG
T ss_pred ccceeccCcCCcccccccHHHHHHHHHHHHhcCCCchhhhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCC
Confidence 899999999999999986 5678899999999999999965421 1122222211 12357788999998766 4
Q ss_pred CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHH-------hcCH
Q 038499 305 SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKE-------YIGH 377 (609)
Q Consensus 305 g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~-------~~g~ 377 (609)
.+|++++++++ +..+... ......+++.+.+.+.+ ..+... ....
T Consensus 252 RvG~~v~~~~~--~~~l~~~------------------------~~~~~~~~~~~~q~~~~--~~l~~~~~~~~~~~~~~ 303 (418)
T d1w7la_ 252 KVGWVLGPDHI--MKHLRTV------------------------HQNSVFHCPTQSQAAVA--ESFEREQLLFRQPSSYF 303 (418)
T ss_dssp CCEEEECCHHH--HHHHHHH------------------------HHTTTSCCCHHHHHHHH--HHHHHHHHTTTSTTSHH
T ss_pred cccccccchhh--hhhhccc------------------------cccccccccchhhHHHH--HHhhhcccccccccccc
Confidence 69999999887 2222110 11112344444443221 111111 1123
Q ss_pred HHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEe
Q 038499 378 EVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQA 457 (609)
Q Consensus 378 ~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v 457 (609)
..+.++.++.++.+.+.|.++ |+++..| ..+++.|.-.++..... .+... ........++++.|+++.||.+
T Consensus 304 ~~~~~~~~~~r~~l~~~L~~~-g~~~~~P----~gg~f~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~ll~~~gV~v 375 (418)
T d1w7la_ 304 VQFPQAMQRCRDHMIRSLQSV-GLKPLIP----QGSYFLITDISDFKRKM--PDLPG-AVDEPYDRRFVKWMIKNKGLVA 375 (418)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-TCEEEEC----SBSSEEEEECHHHHHHC--CCCCC-CTTCCHHHHHHHHHHHHHCEEC
T ss_pred ccchhhhhhhhhhhhhhhhhc-CCcccCC----CceeEEEEECccccccc--chhcc-ccccccHHHHHHHHHHHCCEEE
Confidence 456677777888899999887 7887765 34666665432000000 00000 0000224567777778889999
Q ss_pred ccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 458 RGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 458 ~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
.+|..|....... ..++++|||+. .++++++.++++|+++..
T Consensus 376 ~PG~~F~~~~~~~----------------------~~~~~iRis~~--~~~~~l~~a~~rl~~~~~ 417 (418)
T d1w7la_ 376 IPVSIFYSVPHQK----------------------HFDHYIRFCFV--KDEATLQAMDEKLRKWKV 417 (418)
T ss_dssp EEGGGGSCHHHHT----------------------TSCSEEEEECC--CCHHHHHHHHHHHHHHHC
T ss_pred EcchhhcCCCccC----------------------CCCCEEEEEEc--CCHHHHHHHHHHHHHHhc
Confidence 9998776432110 02589999985 588999999999987653
|
| >d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Multiple substrate aminotransferase, MSAT species: Thermococcus profundus [TaxId: 49899]
Probab=99.88 E-value=1.8e-21 Score=205.55 Aligned_cols=311 Identities=14% Similarity=0.068 Sum_probs=199.4
Q ss_pred HHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH
Q 038499 120 TNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS 197 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~ 197 (609)
.++++.+.+++.+.+|. +++ +|++| +|+++++..++.++ +++|| .|++..+.|+.+...
T Consensus 74 ~~lR~aia~~l~~~~g~~~~~~-~I~it-~G~~~al~~~~~~l---------------~~~gd--~v~~~~P~y~~~~~~ 134 (403)
T d1wsta1 74 TPLRLALARWMEKRYDIPMSKV-EIMTV-AGSQQALDLIGRVF---------------LNPGD--PIVVEAPTYLAAIQA 134 (403)
T ss_dssp HHHHHHHHHHHHHHHCCCCTTC-EEEEE-SSHHHHHHHHHHHH---------------CCTTC--EEEEEESCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCChH-Heeec-ccchHHHHHHHHHH---------------hhcCC--ccccCCCcchhhhHH
Confidence 34444455555555554 454 89998 89999999998877 37888 689999999999999
Q ss_pred HHHcCceEEEEecCCCCCCCHHHHH----HHHhhhccCCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEec
Q 038499 198 WRQSLAEVVEIGLDDDGLLDIEALR----SKLELYKDAKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDF 270 (609)
Q Consensus 198 ~~~~G~~vv~v~~~~~g~ld~e~L~----~al~~~~~~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~ 270 (609)
+...|++++.|+.+.++. +...+. ....+ ....+.++++++++||||.+.+. ++|+++|++||+++|+|+
T Consensus 135 ~~~~g~~~~~v~~~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~NPtG~~~s~~~l~~i~~~a~~~~~~li~De 211 (403)
T d1wsta1 135 FKYYDPEFISIPLDDKGM-RVDLLEEKLEELRKQ--GKRVKIVYTVSTFQNPAGVTMSVDRRKKLLELANEYDFLIVEDG 211 (403)
T ss_dssp HHTTCCEEEEEEEETTEE-CHHHHHHHHHHHHHT--TCCCCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HhhccccceeEeecccCC-ccccccccchhhhhc--cccccccccccccCCCCCccCCHHHHHHHHHHHHhcCceecccc
Confidence 999999999999876442 222222 22221 11355688899999999999885 568889999999999999
Q ss_pred cccCCc----ccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccc
Q 038499 271 AASGPY----VEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLE 346 (609)
Q Consensus 271 A~~~~~----~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (609)
++..-. ....+......+..+++.|++|+++...++|++++++++. +.+...
T Consensus 212 ~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~RiG~~i~~~~~i--~~~~~~---------------------- 267 (403)
T d1wsta1 212 PYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPGFRIGWVAAHPHLI--RKMEIA---------------------- 267 (403)
T ss_dssp TTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGGGCCEEEEECHHHH--HHHHHH----------------------
T ss_pred chhheecCCCCCCcccccCCCCcEEEEccccceecCcccccccccchHHH--HHHHHH----------------------
Confidence 975311 1111111112245688889999996335699999998873 221100
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC--CceEEeCCCCCCCcceEEEEeccCCC
Q 038499 347 DIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN--QNIKILGNTSTKRQAILSFNIHSSTI 424 (609)
Q Consensus 347 ~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~--p~i~v~~~~~~~r~~~~~f~~~~~~~ 424 (609)
......+.+...+.+.+++.-........+.+.+.....++.+.+.|.+. .++....+ ..+++.|...+ ..
T Consensus 268 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~p----~gg~~~~~~~~-~~ 340 (403)
T d1wsta1 268 --KQSIDLCTNTFGQAIAWKYVENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPEGVEWTKP----EGGMFVRVTLP-EG 340 (403)
T ss_dssp --HHHHHSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECCC----SBSSEEEEECC-TT
T ss_pred --HhhhccccccchhhhHHhhhhccccchhHHHHHHHHHHHHHHHHHHHHhhccCCeEEeCC----CceeEEEEECC-CC
Confidence 01111222223332222211111111223455555666666666666542 35666554 44566666555 21
Q ss_pred CCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCC
Q 038499 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPY 504 (609)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~ 504 (609)
.+..++++.|.+ .||.+++|..|... .. .++++||+++.
T Consensus 341 ---------------~~~~~~~~~l~~-~gV~v~pg~~f~~~-~~------------------------~~~~iRi~~~~ 379 (403)
T d1wsta1 341 ---------------IDTKLMMERAVA-KGVAYVPGEAFFVH-RD------------------------KKNTMRLNFTY 379 (403)
T ss_dssp ---------------CCTTTTHHHHHH-TTEECEEGGGGSTT-CC------------------------CCSEEEEECSS
T ss_pred ---------------CCHHHHHHHHHH-CCEEEEechhhcCC-CC------------------------CCCEEEEEecC
Confidence 456778888866 59999998766521 00 26899999964
Q ss_pred CCCHHHHHHHHHHHHHHHHhc
Q 038499 505 YMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 505 ~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++++..++.|++++++-
T Consensus 380 -~~~~~l~~al~rl~~~l~~~ 399 (403)
T d1wsta1 380 -VPEETIREGVRRLAETIKEE 399 (403)
T ss_dssp -SCHHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHHH
Confidence 58999999999999988753
|
| >d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: AAT homologue TM1698 species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=1.2e-20 Score=198.04 Aligned_cols=332 Identities=12% Similarity=-0.001 Sum_probs=212.1
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC--CCCCcEEEeCChHHHHHHHHHHHhcccch
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG--GQEDAMIFCGSGTTAAIKRLQEVMGIAVP 165 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~--~~~~~vift~sGttaal~~l~~~l~~~~~ 165 (609)
+.|+.+.+++.+...... .|....+..++++.+.+++.+..|. +++ +|++| +|+++++..++.++.
T Consensus 41 ~~p~~~~~al~~~~~~~~------~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~-~I~it-~G~~~~l~~~~~~l~---- 108 (389)
T d2gb3a1 41 KTPEVFFERIYENKPEVV------YYSHSAGIWELREAFASYYKRRQRVDVKPE-NVLVT-NGGSEAILFSFAVIA---- 108 (389)
T ss_dssp CCCTHHHHHHHHTCCSSC------CCCCTTCCHHHHHHHHHHHHHTSCCCCCGG-GEEEE-SHHHHHHHHHHHHHC----
T ss_pred CCCHHHHHHHHhcCCCCC------CCCCCcCCHHHHHHHHHHHHHhcCCCcccc-eEEec-ccccccccccccccc----
Confidence 457788888876543221 1222223345555555555555564 454 89998 899999999988873
Q ss_pred hhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCCC-CCCCHHHHHHHHhhhccCCCceEEEEecccC
Q 038499 166 SILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDD-GLLDIEALRSKLELYKDAKRPILGSFSACSN 244 (609)
Q Consensus 166 ~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~-g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn 244 (609)
++|| .|++..+.|+.+....+..|+.++.++.+.+ +..+.+.+...+. ++++++++++++|
T Consensus 109 -----------~~gd--~V~i~~P~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~nP~N 170 (389)
T d2gb3a1 109 -----------NPGD--EILVLEPFYANYNAFAKIAGVKLIPVTRRMEEGFAIPQNLESFIN-----ERTKGIVLSNPCN 170 (389)
T ss_dssp -----------CTTC--EEEEEESCCTHHHHHHHHHTCEEEEEECCGGGTSCCCTTGGGGCC-----TTEEEEEEESSCT
T ss_pred -----------cCCC--eEEEeCCCCccccccccccCccccccccccccccchhhhhhhhcc-----cCccEEEeCCCCc
Confidence 7888 6888888999888888999999999998764 3344444444444 6889999999999
Q ss_pred ccccccC---HHHHHHHHHHhCCeEEEeccccCCcccccCCC-C-CCCCccEEEEcCCCCCCCCC-CcEEEEEechhhcc
Q 038499 245 VTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVEIDVRS-G-QTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQL 318 (609)
Q Consensus 245 ~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~id~~~-~-~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l 318 (609)
|||.+.+ +++|+++|++|++++|.|+++..-...-.... . ......+++.|++|.++.|+ .+|+++++++.+.
T Consensus 171 PtG~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~GlRiG~~~~~~~~i~- 249 (389)
T d2gb3a1 171 PTGVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRGEFASALSIESDKVVVIDSVSKKFSACGARVGCLITRNEELI- 249 (389)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGGCCEEEECSCHHHH-
T ss_pred cccccchHHHHHHHHhhcccCCEEEEEeccccccccccccccccccccccccccccccccccCcccceeeeeccchhHH-
Confidence 9999987 56789999999999999999754221111110 0 11234577789999988763 5999998776521
Q ss_pred CCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC
Q 038499 319 GSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN 398 (609)
Q Consensus 319 ~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~ 398 (609)
..... ......+.....+.+ +..+.-......+.+.++.++.++.+.+.|+++
T Consensus 250 ~~~~~-------------------------~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 302 (389)
T d2gb3a1 250 SHAMK-------------------------LAQGRLAPPLLEQIG--SVGLLNLDDSFFDFVRETYRERVETVLKKLEEH 302 (389)
T ss_dssp HHHHH-------------------------HHHHSCCCCHHHHHH--HHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHhh-------------------------hhhcccccccccccc--ccccccccchhcccccccccccchhhhhhhhhh
Confidence 11000 000111222222221 111111111234566777888889999999888
Q ss_pred CceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhh-----cCcEeccCcccCChhhhhhcC
Q 038499 399 QNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDL-----FGIQARGGCACAGPYGHHLLD 473 (609)
Q Consensus 399 p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~-----~GI~v~~G~~ca~p~~~~ll~ 473 (609)
+......+ ..+++.|.-.+ . .+..++++.|+++ .||.+.+|..|....+
T Consensus 303 ~~~~~~~p----~~g~~~~~~lp-~----------------~~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~~~----- 356 (389)
T d2gb3a1 303 GLKRFTKP----SGAFYITAELP-V----------------EDAEEFARWMLTDFNMDGETTMVAPLRGFYLTPG----- 356 (389)
T ss_dssp TCCCBCCC----SBSSEEEEECS-S----------------SCHHHHHHHHHHSCCBTTEEEECEEGGGGCSSTT-----
T ss_pred ccccccCC----CceEEEEEeCC-C----------------CCHHHHHHHHHHhhhhhhCCEEEEeCcccccCCC-----
Confidence 55444333 44555555444 2 2567788777654 3667777765542111
Q ss_pred CChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 474 LDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 474 i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
..++++||++. .++++++..++.|++.++.
T Consensus 357 -------------------~~~~~iRis~~--~~~~~l~~a~~~L~~~lk~ 386 (389)
T d2gb3a1 357 -------------------LGKKEIRIACV--LEKDLLSRAIDVLMEGLKM 386 (389)
T ss_dssp -------------------TTSSEEEEECC--SCHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCCCEEEEEEc--CCHHHHHHHHHHHHHHHHH
Confidence 12589999986 6888888888888777654
|
| >d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Spore coat polysaccharide biosynthesis protein C species: Helicobacter pylori [TaxId: 210]
Probab=99.84 E-value=1.1e-19 Score=189.61 Aligned_cols=334 Identities=12% Similarity=-0.001 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
..+++++.+++++|.+ .+++|+|||+ |+..++.+++ +.+||+.+|+++++++++...++...
T Consensus 32 ~v~~fE~~~~~~~g~k---~ai~~~Sgt~-Al~~al~al~--------------~~~~~~~eVi~p~~t~~a~~~ai~~~ 93 (371)
T d2fnua1 32 RSLLFEEALCEFLGVK---HALVFNSATS-ALLTLYRNFS--------------EFSADRNEIITTPISFVATANMLLES 93 (371)
T ss_dssp HHHHHHHHHHHHHTCS---EEEEESCHHH-HHHHHHHHSS--------------CCCTTSCEEEECSSSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---eEEEEecHHH-HHHHHHHHhc--------------ccCCCCCeeecccccccccceeeecc
Confidence 4778899999999997 4567757776 6888888876 45676668999999999999999999
Q ss_pred CceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccC
Q 038499 202 LAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDV 281 (609)
Q Consensus 202 G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~ 281 (609)
|++++.++++++..++.++++++++ +++++|++.| ..|...|+++|.++|+++|+++|.|+||+.|...-.-
T Consensus 94 G~~pv~vDi~~~~~~~~~~~~~~~~-----~~t~avi~vh---~~G~~~~~~~i~~~~~~~~i~lIEDaaqa~Ga~~~~~ 165 (371)
T d2fnua1 94 GYTPVFAGIKNDGNIDELALEKLIN-----ERTKAIVSVD---YAGKSVEVESVQKLCKKHSLSFLSDSSHALGSEYQNK 165 (371)
T ss_dssp TCEEEECCBCTTSSBCGGGSGGGCC-----TTEEEEEEEC---GGGCCCCHHHHHHHHHHHTCEEEEECTTCTTCEETTE
T ss_pred Ccccccccccccccccchhhhhhcc-----chhhcccccc---ccccccccccccccccccchhhccchhhccCceeccc
Confidence 9999999999887788888888777 6899887765 6699999999999999999999999999998654332
Q ss_pred CCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHH
Q 038499 282 RSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQ 361 (609)
Q Consensus 282 ~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~ 361 (609)
..+....+.++++.+.|.+.+..| |+++.+++-. .+.+......| ..... ... ......|...-+.
T Consensus 166 ~~G~~g~~~~~Sf~~~K~l~~g~G-G~i~t~~~~~-~~~~~~~~~~g-~~~~~------~~~-----~~~~~~G~n~r~s 231 (371)
T d2fnua1 166 KVGGFALASVFSFHAIKPITTAEG-GAVVTNDSEL-HEKMKLFRSHG-MLKKD------FFE-----GEVKSIGHNFRLN 231 (371)
T ss_dssp ETTSSSSEEEEECCTTSSSCCSSC-EEEEESCHHH-HHHHHHHTBTT-EEESS------SSC-----EEESSCCCBCCCC
T ss_pred cCCccccccccccccccccccccc-eEEEeechhh-hhhcccccccc-ccccc------ccc-----ccccccccccccc
Confidence 222222344555556799986554 8888876441 11221111111 10000 000 0011122211111
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCC--CcceEEEEeccCCCCCcCCCCCCCCCCCC
Q 038499 362 MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTK--RQAILSFNIHSSTINSSLGENTKTETDKP 439 (609)
Q Consensus 362 ~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~--r~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 439 (609)
-+.|++.+. +....+.+.++.+++++++.+.|+.++++.+..+.... ....+.+.+.. .. .
T Consensus 232 el~Aaigl~--qL~~l~~~~~~R~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~--------------~ 294 (371)
T d2fnua1 232 EIQSALGLS--QLKKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQ-KF--------------F 294 (371)
T ss_dssp HHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECG-GG--------------G
T ss_pred chhhhhhhh--hhhhccchhhhhhhhhhhhcccccccccccccccccccccccccccccccc-cc--------------h
Confidence 122333222 33457778888888999999999999998886543221 22233333332 11 0
Q ss_pred CChHHHHHHHhhhcCcEeccCcccCC--h-hhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHH
Q 038499 440 LHGPFVATLLNDLFGIQARGGCACAG--P-YGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLE 516 (609)
Q Consensus 440 l~~~~v~~~L~~~~GI~v~~G~~ca~--p-~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~ 516 (609)
...+.+.+.|.+ .||.++.....-. | +.+....-..+.++.+. ...+.|.+++.+|++|++++++
T Consensus 295 ~~r~~~~~~L~~-~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~-----------~~~l~LP~~~~lt~~di~~I~~ 362 (371)
T d2fnua1 295 TCKKLILESLHK-RGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFY-----------HAEISLPCHANLNLESVQNIAH 362 (371)
T ss_dssp GGHHHHHHHHHH-TTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHH-----------HHEEEECCCTTCCHHHHHHHHH
T ss_pred hHHHHHHHHHHH-CCCCcceeCcccccCHHHHhccccCCCHHHHHHH-----------hCeEECcCCCCCCHHHHHHHHH
Confidence 134678888865 6999986542110 1 11111111223344332 3689999999999999999999
Q ss_pred HHHHHHHh
Q 038499 517 ALEFIAIY 524 (609)
Q Consensus 517 al~~v~~~ 524 (609)
.|.++.+.
T Consensus 363 ~i~~~~~~ 370 (371)
T d2fnua1 363 SVLKTFES 370 (371)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988764
|
| >d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Pseudomonas putida [TaxId: 303]
Probab=99.83 E-value=1.8e-19 Score=186.72 Aligned_cols=312 Identities=16% Similarity=0.197 Sum_probs=201.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+++..+.....+++.|+++-|+.. .++|. ||.. |+..++..+ +++|| +|+++...|+..
T Consensus 53 Y~R~~nPT~~~LE~~la~LEg~~~--a~~~~-SGma-Ai~~~l~~l---------------~~~Gd--~vl~~~~~Yg~t 111 (392)
T d1gc0a_ 53 YSRISNPTLNLLEARMASLEGGEA--GLALA-SGMG-AITSTLWTL---------------LRPGD--EVLLGNTLYGCT 111 (392)
T ss_dssp ----CCHHHHHHHHHHHHHHTCSE--EEEES-SHHH-HHHHHHHHH---------------CCTTC--EEEEESSCCSHH
T ss_pred ecCCCChHHHHHHHHHHHHhCCcc--eeehh-hHHH-HHHHHHHhh---------------ccCCC--eeecccccchhh
Confidence 444445567789999999999863 45664 7776 566555554 48999 788888888877
Q ss_pred HHHHH----HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~~~----~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
...+. ..|+++.+++.. |+++++++++ ++|++|++..++|||..+.|+++|+++||++|++++||.
T Consensus 112 ~~l~~~~~~~~Gi~~~~~d~~-----d~~~~~~ai~-----~~t~lv~~Esp~NP~l~v~Di~~i~~ia~~~g~~~vvDn 181 (392)
T d1gc0a_ 112 FAFLHHGIGEFGVKLRHVDMA-----DLQALEAAMT-----PATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDN 181 (392)
T ss_dssp HHHHHHTGGGGTCEEEEECTT-----CHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEEC
T ss_pred hhhhhhhhccCCcccccCCcc-----CHHHHHHhCC-----CCCeEEEecccccceeeecchHHHHHHHHhcCCEEEEec
Confidence 66554 469999998754 8999999998 789999999999999999999999999999999999999
Q ss_pred cccCCcc--cccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccc
Q 038499 271 AASGPYV--EIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLE 346 (609)
Q Consensus 271 A~~~~~~--~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (609)
+.+.|.. |+++ |+|+++-|.+|+++|-.. .|++++++... .+.+-..
T Consensus 182 T~atP~~~~Pl~~------GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~--~~~r~~~--------------------- 232 (392)
T d1gc0a_ 182 TYCTPYLQRPLEL------GADLVVHSATKYLSGHGDITAGIVVGSQALV--DRIRLQG--------------------- 232 (392)
T ss_dssp TTTHHHHCCGGGG------TCSEEEEETTTTTTCSSSCCCEEEEECHHHH--HHHHHTH---------------------
T ss_pred CccCccccChHHh------CCCEEEEecceeecCCcccccccccchhHHH--HHHHHHH---------------------
Confidence 9876644 3332 899999999999997543 68888887762 1110000
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCc
Q 038499 347 DIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQ 412 (609)
Q Consensus 347 ~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~ 412 (609)
..+..+++.+...... .+....-+....++..+.+..+.+.|+++|.++ |+-|.- ....
T Consensus 233 --~~~~~G~~~~p~da~l-----l~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g 305 (392)
T d1gc0a_ 233 --LKDMTGAVLSPHDAAL-----LMRGIKTLNLRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPG 305 (392)
T ss_dssp --HHHHTCCCCCHHHHHH-----HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCT
T ss_pred --HHHccCCcCChhhHHH-----HHhccccHHHHHHHHHHHHHHHHHHHHhCCCccEEeeccccCCcccccccccccCCC
Confidence 0111123322222111 111223455666777888899999999998876 444310 1235
Q ss_pred ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhC
Q 038499 413 AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKG 489 (609)
Q Consensus 413 ~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~ 489 (609)
+.++|.+.. +. -....+++.| +.+.+.+.-|...+ .|.......+.++...
T Consensus 306 g~~sf~l~~-~~---------------~~~~~f~~~L-~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~--------- 359 (392)
T d1gc0a_ 306 GMIAFELKG-GI---------------GAGRRFMNAL-QLFSRAVSLGDAESLAQHPASMTHSSYTPEERA--------- 359 (392)
T ss_dssp TEEEEEETT-HH---------------HHHHHHHHHC-SSSEECSCCSCSSCEEECGGGTTTSSSCHHHHH---------
T ss_pred cEEEEEEeC-CH---------------HHHHHHHHhC-CcceEeeccCCcChhhcCccccccccCCHHHHH---------
Confidence 678888865 21 0123455555 44566666565432 2322222233322211
Q ss_pred CCCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 490 YVGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 490 ~~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
..|+.++.||||++.-..++=++.+-++|+
T Consensus 360 ~~Gi~~~liRlSVGlEd~eDLi~Dl~~AL~ 389 (392)
T d1gc0a_ 360 HYGISEGLVRLSVGLEDIDDLLADVQQALK 389 (392)
T ss_dssp HTTCCTTEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HcCCCcCeEEEEeeeCCHHHHHHHHHHHHH
Confidence 136778999999997544444444444444
|
| >d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Phenylserine aldolase PSALD species: Pseudomonas putida [TaxId: 303]
Probab=99.82 E-value=2.2e-19 Score=182.48 Aligned_cols=318 Identities=12% Similarity=0.036 Sum_probs=195.4
Q ss_pred CChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhh
Q 038499 88 RSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSI 167 (609)
Q Consensus 88 ~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~ 167 (609)
++.+.|+++|.++... + ..++......+++|+.+++++|.+. +++||++||.+++ .++..+
T Consensus 14 g~~P~v~~A~~~a~~~-----~----~~~~~~~~~~~~l~~~la~~~g~~~--~v~f~~sGt~An~-~a~~~~------- 74 (345)
T d1v72a1 14 GASPEVAQALVKHSSG-----Q----AGPYGTDELTAQVKRKFCEIFERDV--EVFLVPTGTAANA-LCLSAM------- 74 (345)
T ss_dssp CCCHHHHHHHHHTTSS-----C----CCSTTCSHHHHHHHHHHHHHHTSCC--EEEEESCHHHHHH-HHHHTS-------
T ss_pred CCCHHHHHHHHHHhcc-----C----ccccCCCHHHHHHHHHHHHHHCCCc--EEEECCchHHHHH-HHHHHH-------
Confidence 3456799999875421 1 1223345678899999999999853 6999977777644 443332
Q ss_pred HHHHHHhhhcCCCceEEEECCCCccchHHHH---HHcCceEEEEecCCCCCCCHHHHHHHHhhhcc-CCCce-EEEEecc
Q 038499 168 LREKLIKCLRDEERWVVFVGPHEHHSNLLSW---RQSLAEVVEIGLDDDGLLDIEALRSKLELYKD-AKRPI-LGSFSAC 242 (609)
Q Consensus 168 ~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~---~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~-~~~~~-lv~~s~~ 242 (609)
..+++ .+++....|.+....+ ...+..+..++.+.++.++++++++.+..... ...+. .++....
T Consensus 75 --------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (345)
T d1v72a1 75 --------TPPWG--NIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQ 144 (345)
T ss_dssp --------CCTTE--EEEECTTSHHHHSSTTHHHHHTTSCEEEECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEES
T ss_pred --------HhcCC--ccccccccceeeechhhHHHhcCcccccccccccccccHHHhhhhhcccccccccccceeeeeec
Confidence 24555 5788888888765443 44677788887777889999999999975321 12233 3344444
Q ss_pred cCccccc---cCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCC----CCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 243 SNVTGIY---SDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQT----DGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 243 sn~TG~~---~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~----~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
.|++|.. .+++++.++|++||+++++|+++..+....+...... ...+.++.+.+|.. +...+..+.....
T Consensus 145 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~ 222 (345)
T d1v72a1 145 ATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNG--VLAAEAIVLFNTS 222 (345)
T ss_dssp SCTTSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGT--CSSCEEEEESSGG
T ss_pred cccccccccchhhhhHHHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccc--cccccccccchhh
Confidence 5555554 4567788899999999999999875433332222110 12345555555544 4334554444433
Q ss_pred hccCCCCCCccCCCceEeecccccccccccccccccccCCChh-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 316 YQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ-VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 316 ~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~-i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
.. .... . ......++.. ....+.++.... ..........+...+.+++.+.
T Consensus 223 ~~-~~~~------------------------~-~~~~~~~~~~~~~~aa~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 274 (345)
T d1v72a1 223 LA-TEMS------------------------Y-RRKRAGHLSSKMRFLSAQIDAYL--TDDLWLRNARKANAAAQRLAQG 274 (345)
T ss_dssp GH-HHHH------------------------H-HHHHTTCCCSSTHHHHHHHHHHT--STTHHHHHHHHHHHHHHHHHHH
T ss_pred hh-hhcc------------------------c-cccccccccchhhHHhhhhHHHH--HHhhhhhhccchhhHHHHHHHH
Confidence 10 0000 0 0111112221 122222222211 2334456667777888899999
Q ss_pred hCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC
Q 038499 395 LLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL 474 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i 474 (609)
+.+++++.+.++. ..+++.+.+ + ..+++.|++ .||.+..+. .
T Consensus 275 l~~~~g~~~~~p~---~~niv~~~~-~---------------------~~~~~~L~~-~gi~v~~~~-----~------- 316 (345)
T d1v72a1 275 LEGLGGVEVLGGT---EANILFCRL-D---------------------SAMIDALLK-AGFGFYHDR-----W------- 316 (345)
T ss_dssp HTTCTTEEEESCC---CSSEEEEEE-C---------------------HHHHHHHHH-TTCBCBCSS-----S-------
T ss_pred HHhcCCcEeccCC---CccEEEEEc-C---------------------HHHHHHHHH-cCCCccccC-----C-------
Confidence 9999999998774 345554443 3 246667766 498775331 1
Q ss_pred ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 475 DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.++.+||+++.++|+||||+++++|+.+
T Consensus 317 -------------------~~~~lR~~~~~~~T~edid~~le~lr~a 344 (345)
T d1v72a1 317 -------------------GPNVVRFVTSFATTAEDVDHLLNQVRLA 344 (345)
T ss_dssp -------------------STTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred -------------------CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2589999999999999999999999875
|
| >d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Citrobacter freundii [TaxId: 546]
Probab=99.81 E-value=1e-18 Score=181.11 Aligned_cols=315 Identities=14% Similarity=0.116 Sum_probs=204.6
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+++..+.....+++.|+++-|+.. .++|. ||.. |+..++..+ +++|| +|+++...|...
T Consensus 57 Y~R~~nPT~~~LE~~la~LEgg~~--a~~~s-SGma-Ai~~~l~~l---------------l~~Gd--~vi~~~~~Yg~t 115 (397)
T d1y4ia1 57 YTRLGNPTTDALEKKLAVLERGEA--GLATA-SGIS-AITTTLLTL---------------CQQGD--HIVSASAIYGCT 115 (397)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTCSE--EEEES-SHHH-HHHHHHHHH---------------CCTTC--EEEEESSSCHHH
T ss_pred eeCCCCHHHHHHHHHHHHHhCCcc--ceeeh-HHHH-HHHHHHhhc---------------cCCCC--eeeeeccccccc
Confidence 344444557788999999999863 45664 7776 455555444 48999 788888888776
Q ss_pred HHHH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
...+ ...|+++..++.. |+++++++++ ++|++|++..|+||+..+.|+++|+++||++|++++||.
T Consensus 116 ~~~~~~~l~~~Gi~~~~vd~~-----d~~~~~~~i~-----~~Tklv~~Esp~NP~l~v~Di~~i~~iA~~~gi~~vvDn 185 (397)
T d1y4ia1 116 HAFLSHSMPKFGINVRFVDAG-----KPEEIRAAMR-----PETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDN 185 (397)
T ss_dssp HHHHHTHHHHTTCEEEEECTT-----SHHHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEEC
T ss_pred chhhhcccCCCceEeeccCCC-----CHHHHHHhcC-----CCCcEEEecCCcccceeecccHHHHHHhhcCCceEEecC
Confidence 6543 3579999999754 7899999998 789999999999999999999999999999999999999
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI 348 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (609)
+.+.|+..-++.- |+|+++.|..|+++|-.. .|+++++++.. .+.+-. .
T Consensus 186 T~atP~~~~Pl~~----GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~--~~~r~~------------------~----- 236 (397)
T d1y4ia1 186 TFMSPYCQQPLQL----GADIVVHSVTKYINGHGDVIGGIIVGKQEFI--DQARFV------------------G----- 236 (397)
T ss_dssp TTTCTTTCCGGGG----TCSEEEEETTTTTTCSSCCCCEEEEECHHHH--HHHHHT------------------H-----
T ss_pred cccCcccCcchhc----CCCEEEEehhhhcCCCcceeeeccCCCHHHH--HHHHHH------------------H-----
Confidence 9887655433322 899999999999998643 68888887762 111000 0
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcce
Q 038499 349 EERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAI 414 (609)
Q Consensus 349 ~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~ 414 (609)
.+...++.++..... +. +....-+....++..+.+..+.+.|+++|.++ |+-|.- ....++
T Consensus 237 ~~~~~G~~l~p~~a~---l~--~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~h~~~~~~~~g~gg~ 311 (397)
T d1y4ia1 237 LKDITGGCMSPFNAW---LT--LRGVKTLGIRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGI 311 (397)
T ss_dssp HHHTTCCCCCHHHHH---HH--HHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHCSSCCSE
T ss_pred HHhCcCCcCCHHHHH---HH--HcCcCcHHHHHHHHHHHHHHHHHHHHhCCCcCeEeCCCCCCCccccccccccCCCCeE
Confidence 011112222221111 11 11122345556777888999999999999984 555521 114678
Q ss_pred EEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCC
Q 038499 415 LSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYV 491 (609)
Q Consensus 415 ~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~ 491 (609)
++|.+.. +. -....+++.| +.+.+.+.-|..-+ .|.......+..+... ..
T Consensus 312 ~sf~~~~-~~---------------~~~~~f~~~L-~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~---------~~ 365 (397)
T d1y4ia1 312 ISFEIAG-GL---------------EAGRRMINSV-ELCLLAVSLGDTETLIQHPASMTHSPVAPEERL---------KA 365 (397)
T ss_dssp EEEEETT-HH---------------HHHHHHHHTC-SSSEECSCCSCSSCEEECTTTTTTSSSCHHHHH---------HT
T ss_pred EEEEecC-CH---------------HHHHHHHHcC-CccceeeccCcccceeeCccccccccCCHHHHH---------Hc
Confidence 8988765 21 0123444444 44555555554322 1322222233332221 14
Q ss_pred CCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 492 GVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 492 ~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
|+.++.||||++.-..++-++.+-++|+.
T Consensus 366 Gi~~~liRlsvGlEd~~DLi~Dl~~AL~~ 394 (397)
T d1y4ia1 366 GITDGLIRLSVGLEDPEDIINDLEHAIRK 394 (397)
T ss_dssp TCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred CCCcCEEEEEeccCCHHHHHHHHHHHHHH
Confidence 56789999999975554445555555443
|
| >d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) species: Amycolatopsis mediterranei [TaxId: 33910]
Probab=99.81 E-value=3.2e-18 Score=179.24 Aligned_cols=329 Identities=15% Similarity=0.091 Sum_probs=213.5
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
.+.++++.+++++|.+ .+++|+|||+ |+.+++.+++ +++|| +|+++++.+++...+....
T Consensus 35 ~v~~fE~~~a~~~g~~---~~v~~~SGt~-Al~lal~~l~--------------~~~gd--eVi~p~~t~~a~~~ai~~~ 94 (384)
T d1b9ha_ 35 EVNSFEREFAAHHGAA---HALAVTNGTH-ALELALQVMG--------------VGPGT--EVIVPAFTFISSSQAAQRL 94 (384)
T ss_dssp HHHHHHHHHHHHTTCS---EEEEESCHHH-HHHHHHHHTT--------------CCTTC--EEEEESSSCTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---eEEEeCCHHH-HHHHHHHHcC--------------CCCCC--EEEEecccccccccccccc
Confidence 3677899999999997 4567767777 5888878876 68999 7999999999999999999
Q ss_pred CceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccccc
Q 038499 202 LAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEID 280 (609)
Q Consensus 202 G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id 280 (609)
|++++.+++++ ++.+|++.+++.++ ++++++++ .+..|...|+++|.++|+++|++++.|+||+.|...-.
T Consensus 95 g~~p~~~d~~~~~~~~d~~~~~~~i~-----~~tk~i~~---~~~~g~~~d~~~i~~~~~~~~i~lieD~a~a~ga~~~g 166 (384)
T d1b9ha_ 95 GAVTVPVDVDAATYNLDPEAVAAAVT-----PRTKVIMP---VHMAGLMADMDALAKISADTGVPLLQDAAHAHGARWQG 166 (384)
T ss_dssp TCEEEEECBCTTTCCBCHHHHHHHCC-----TTEEEECC---BCGGGCCCCHHHHHHHHHHHTCCBCEECTTCTTCEETT
T ss_pred ccccccccccccccccchhhhccccc-----cccccccc---ccccccccccccchhhhhhhhhhhhhhhceecccccCC
Confidence 99999999886 68899999999998 68888754 46778999999999999999999999999998764322
Q ss_pred CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCc-cCCCceEeecccccccccccccccccccCCChhH
Q 038499 281 VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPST-CGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQV 359 (609)
Q Consensus 281 ~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~-~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i 359 (609)
-..+....+.+++++++|.+++..| |+++++++-. ...+.... .|.+. ......|.... .....-..++
T Consensus 167 ~~~g~~g~~~~~Sf~~~K~i~~g~G-G~i~t~~~~~-~~~~~~~~~~g~~~-------~~~~~~~~~~~-~G~n~rms~l 236 (384)
T d1b9ha_ 167 KRVGELDSIATFSFQNGKLMTAGEG-GAVVFPDGET-EKYETAFLRHSCGR-------PRDDRRYFHKI-AGSNMRLNEF 236 (384)
T ss_dssp EEGGGSSSCEEEECCTTSSSCSSSC-EEEEECTTCH-HHHHHHHHHTBTTC-------CTTCSSCCCCS-CCCBCBCBHH
T ss_pred EecCcccccceeccccccccccccc-chhhhhhHHH-HHHHHHHHhcCCCC-------ccccccccccc-cccccccccc
Confidence 1111122345566677899986665 8888875431 01111111 11111 01111111110 0000111223
Q ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC-CCCcc--eEEEEeccCCCCCcCCCCCCCCC
Q 038499 360 IQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTS-TKRQA--ILSFNIHSSTINSSLGENTKTET 436 (609)
Q Consensus 360 ~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~-~~r~~--~~~f~~~~~~~~~~~~~~~~~~~ 436 (609)
.|++... +....+.+.++.+++.+++.+.|+.++++.+..... ..+.. .+.|.+.. ..
T Consensus 237 ----~Aaig~~--qL~~ld~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~------------ 297 (384)
T d1b9ha_ 237 ----SASVLRA--QLARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPG-LT------------ 297 (384)
T ss_dssp ----HHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTT-CC------------
T ss_pred ----hhhhhhh--hhhhcccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecc-cc------------
Confidence 2222221 233567778888899999999999999887654322 22222 23333332 10
Q ss_pred CCCCChHHHHHHHhhhcCcEeccCcccCChh-hh-hh--cCC----------ChhHHHHHHHHHhhCCCCCCCcEEEEec
Q 038499 437 DKPLHGPFVATLLNDLFGIQARGGCACAGPY-GH-HL--LDL----------DEAQSYQIRSAIQKGYVGVKPGWTRISF 502 (609)
Q Consensus 437 ~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~-~~-~l--l~i----------~~~~~~~~~~~~~~~~~~~~~g~iRls~ 502 (609)
....+.+.+.|++ .||.++... . |. .+ .+ ++. ..+.++.+ ....+.|.+
T Consensus 298 --~~~Rd~l~~~L~~-~GI~~~~~y--~-plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l-----------~~~~l~LP~ 360 (384)
T d1b9ha_ 298 --EERRNALVDRLVE-AGLPAFAAF--R-AIYRTDAFWELGAPDESVDAIARRCPNTDAI-----------SSDCVWLHH 360 (384)
T ss_dssp --HHHHHHHHHHHHH-TTCCEEECC--C-CGGGSHHHHHSSCCSSCHHHHHHTCHHHHHH-----------HHHEEEEEG
T ss_pred --cccHHHHHHHHHH-CCCCeeeeC--c-chhcCHHHHhcCCCcccccccccCCHHHHHH-----------HhCEEEccC
Confidence 0123468899976 599988653 2 21 00 01 011 11223332 136799999
Q ss_pred CCCCC-HHHHHHHHHHHHHHHHh
Q 038499 503 PYYMS-NEEFEFTLEALEFIAIY 524 (609)
Q Consensus 503 ~~~~t-~eeid~ll~al~~v~~~ 524 (609)
+..+| ++|++++++.|++++++
T Consensus 361 ~~~Lt~e~ei~~I~~~i~~~l~~ 383 (384)
T d1b9ha_ 361 RVLLAGEPELHATAEIIADAVAR 383 (384)
T ss_dssp GGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHhh
Confidence 98888 67999999999998875
|
| >d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: SelA-like domain: Hypothetical protein MJ0158 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.80 E-value=5.6e-19 Score=183.84 Aligned_cols=163 Identities=18% Similarity=0.195 Sum_probs=124.7
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEEC-CCCccchHHHHHH
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVG-PHEHHSNLLSWRQ 200 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~-~~~h~s~~~~~~~ 200 (609)
...++++..++.++..+.++++++ +|+++++..++.++ .+++. +|+++ .+.|+++...++.
T Consensus 51 ~~~~l~~~~~~~~~~~~~e~~~~~-~~~~~a~~~~l~al----------------~~~~~-vi~~~~~~~~~~~~~~~~l 112 (366)
T d2aeua1 51 FAEKVNEYGLKHLGGDENDKCVGF-NRTSSAILATILAL----------------KPKKV-IHYLPELPGHPSIERSCKI 112 (366)
T ss_dssp HHHHHHHHHHHHHTCCTTEEEEEE-SSHHHHHHHHHHHH----------------CCSEE-EEECSSSSCCTHHHHHHHH
T ss_pred hHHHHHHHHHHHccCCCccEEEEe-CCHHHHHHHHHHHh----------------CCCCE-EEEecCCCcchhHHHHHHh
Confidence 346677788888888766577777 56666777666665 35553 45555 4689999999999
Q ss_pred cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcc-ccccCHHHHHHHHHHhCCeEEEeccccCCcccc
Q 038499 201 SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVT-GIYSDTRSIARLLHQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 201 ~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~T-G~~~dl~~I~~la~~~g~~vivD~A~~~~~~~i 279 (609)
.|++++. .+ |+++|+++|+ ++|+++++++++|++ +.+.|+++|+++||+||+++++|++++.+....
T Consensus 113 ~g~~~v~--~~-----d~e~l~~~i~-----~~tk~i~~~~p~n~~~~~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~ 180 (366)
T d2aeua1 113 VNAKYFE--SD-----KVGEILNKID-----KDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLL 180 (366)
T ss_dssp TTCEEEE--ES-----CHHHHHTTCC-----TTEEEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHH
T ss_pred cCCeEEC--CC-----CHHHHHHhcC-----CCceEEEEEecCCCCcCCHHHHHHHHHHhccCcEEEEEecCcccccccc
Confidence 9998653 33 8999999998 689999999998864 467899999999999999999999987543322
Q ss_pred cCCCC-CCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 280 DVRSG-QTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 280 d~~~~-~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
...+. ...++|++++|.||+++|+. .|+++.++++
T Consensus 181 ~~~~~~~~~~~di~~~S~sK~~~g~~-~G~i~~~~~~ 216 (366)
T d2aeua1 181 FNQPPALKLGADLVVTSTDKLMEGPR-GGLLAGKKEL 216 (366)
T ss_dssp TTCCCHHHHTCSEEEEETTSSSSSCS-CEEEEEEHHH
T ss_pred ccCCCHhhcCceEEEecccccccccc-eeEEEecHHH
Confidence 22111 01268999999999999876 6999999998
|
| >d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=3.4e-18 Score=175.72 Aligned_cols=340 Identities=16% Similarity=0.161 Sum_probs=225.8
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCC-CchhhHHHH-HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTC-DSYVGQHTT-NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~-~~~~~~~~~-~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
...++.|.+++...+...|+....+ .++.|.... +...-+.++.++++|+... +|-.. ||+.+++..+...
T Consensus 36 N~~S~~v~~a~~S~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~a~~a-nVqp~-SGs~AN~av~~Al----- 108 (416)
T d1dfoa_ 36 NYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDIVEQLAIDRAKELFGADYA-NVQPH-SGSQANFAVYTAL----- 108 (416)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCSEE-ECCCS-SHHHHHHHHHHHH-----
T ss_pred ccCCHHHHHHhcCcccCcccCCCCCCcccCCChhHHHHHHHHHHHHHHHhCCCcc-eeecc-cCccHHHHHHHHh-----
Confidence 3566888898887777666543322 144555444 4445577888999999754 44454 8999877666543
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchHHH-----HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEE
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-----WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSF 239 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-----~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~ 239 (609)
++||| .|+..+..|.+.... +.....+.+..+++.++.+|.+++++.+.+ .+|+++++
T Consensus 109 -----------l~pGD--~Il~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~IDyd~l~~~a~~----~kPklIi~ 171 (416)
T d1dfoa_ 109 -----------LEPGD--TVLGMNLAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKE----HKPKMIIG 171 (416)
T ss_dssp -----------CCTTC--EEEEECTTTTCCGGGTCTTSHHHHHSEEEEECBCSSSSBCHHHHHHHHHH----HCCSEEEE
T ss_pred -----------cCCCC--eeeeccccccccccccccccccCceEEEEecccCCccCccHHHHHHHHHH----hccceEEe
Confidence 48999 588888888766532 222345777888888889999999999987 58999887
Q ss_pred ecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEec---hhh
Q 038499 240 SACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTK---ALY 316 (609)
Q Consensus 240 s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~---~~~ 316 (609)
.. +......|++++.++|++.|+++++|.||..|.+.-...+-....+|++++|.||.|.||.| |+++.++ ++.
T Consensus 172 G~--S~y~r~~d~~~~reiad~vga~l~~D~aH~~GLIa~g~~~sP~~~aDvvt~tThKtlrGPrg-giI~~~~~~~~~~ 248 (416)
T d1dfoa_ 172 GF--SAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRG-GLILAKGGSEELY 248 (416)
T ss_dssp EC--SSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCCTTTSSEEEEESSSTTCCCSC-EEEEESSCCHHHH
T ss_pred cc--cccccccCHHHHHHHHHhcCceEEcchhhhhcceeccccCCcccccceeeeehhhcccCCCc-eEEEeccchHhHH
Confidence 64 34558899999999999999999999999876544333333334679999999999999996 8888874 321
Q ss_pred c-cC-CCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 317 Q-LG-SFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 317 ~-l~-~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
+ ++ .+-|.. .|.|-...++..+.+|............++..++++.+.+.
T Consensus 249 ~~i~~avfPg~----------------------------qggp~~~~iaa~Aval~Ea~~~~fk~Y~~qvv~NA~~La~~ 300 (416)
T d1dfoa_ 249 KKLNSAVFPGG----------------------------QGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEV 300 (416)
T ss_dssp HHHHHHHTTTT----------------------------CSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhCccc----------------------------ccCccHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH
Confidence 1 11 111111 12333333333333333111123457778888899999999
Q ss_pred hCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC
Q 038499 395 LLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL 474 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i 474 (609)
|.+. |++|+.... ....+.+.+.+ . .+++..+.+.| ++.||.+.--+....|.+.
T Consensus 301 L~~~-G~~iv~ggT--dnHlvlvdl~~-~---------------~~~G~~a~~~L-e~~gI~~Nkn~iP~d~~~~----- 355 (416)
T d1dfoa_ 301 FLER-GYKVVSGGT--DNHLFLVDLVD-K---------------NLTGKEADAAL-GRANITVNKNSVPNDPKSP----- 355 (416)
T ss_dssp HHHT-TCEEGGGSC--SSSEEEEECGG-G---------------TCCHHHHHHHH-HHTTEECEECCCTTCSSCT-----
T ss_pred HHhC-CcccccCCC--CCceeEEEecc-c---------------CCCHHHHHHHH-HHcCeEEeCCcCCCCCCCC-----
Confidence 9887 999985422 22344444443 1 25677888877 6679987632111101000
Q ss_pred ChhHHHHHHHHHhhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHh
Q 038499 475 DEAQSYQIRSAIQKGYVGVKPGWTRISFP----YYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~g~iRls~~----~~~t~eeid~ll~al~~v~~~ 524 (609)
..+..|||..+ .-+.++|++++.+.|.+++..
T Consensus 356 ------------------~~~SGiRiGT~a~TtrG~~e~d~~~iA~~I~~~l~~ 391 (416)
T d1dfoa_ 356 ------------------FVTSGIRVGTPAITRRGFKEAEAKELAGWMCDVLDS 391 (416)
T ss_dssp ------------------TTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred ------------------CCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHc
Confidence 12678999974 445789999999999988863
|
| >d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.79 E-value=3.5e-18 Score=174.78 Aligned_cols=341 Identities=18% Similarity=0.188 Sum_probs=222.4
Q ss_pred CCChHHHHHHHHHhhcCCccC--CCCCCchhhHHH-HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhccc
Q 038499 87 GRSLRYIENYIINNVLPFYGN--THTCDSYVGQHT-TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIA 163 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n--~~~~~~~~~~~~-~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~ 163 (609)
...++.|.+++...+...|+. |+.. ++.|... .++...+.+..++++|+... +|=. -||+.+++..+...
T Consensus 33 N~~S~~v~~a~~S~l~nkyaeG~pg~r-yy~G~~~id~iE~la~~ra~~lF~a~~a-nVqp-~SGs~An~av~~al---- 105 (405)
T d1kl1a_ 33 NFVSRAVMEAQGSVLTNKYAEGYPGRR-YYGGCEYVDIVEELARERAKQLFGAEHA-NVQP-HSGAQANMAVYFTV---- 105 (405)
T ss_dssp CCCCHHHHHHHTSGGGGCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHHCCSEE-ECCC-SSHHHHHHHHHHHH----
T ss_pred CcCCHHHHHHhcCcccCcCcCCCCCcc-ccCCchhHHHHHHHHHHHHHHHhCCCcc-eeec-cCchHHHHHHHHHh----
Confidence 356678888887777666653 3332 3445444 44555577888999999754 4434 48999876655443
Q ss_pred chhhHHHHHHhhhcCCCceEEEECCCCccchHH-----HHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhccCCCceEE
Q 038499 164 VPSILREKLIKCLRDEERWVVFVGPHEHHSNLL-----SWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKDAKRPILG 237 (609)
Q Consensus 164 ~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~-----~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~~~~~~lv 237 (609)
++||| .|+..+..+.+... .+.....+++.+++++ ++.+|.+++++.+.+ .+|++|
T Consensus 106 ------------l~pGD--~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~~~~ID~d~l~~~a~~----~kPklI 167 (405)
T d1kl1a_ 106 ------------LEHGD--TVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARL----HRPKLI 167 (405)
T ss_dssp ------------CCTTC--EEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH----HCCSEE
T ss_pred ------------cCCCC--EEEEeecccccccccCccccccceEEEEEEeccchhcccccHHHHHHHHHh----hCcceE
Confidence 48999 57777655544331 1222356788888886 678999999999987 589998
Q ss_pred EEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhc
Q 038499 238 SFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQ 317 (609)
Q Consensus 238 ~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~ 317 (609)
++..-.. -...|++++.++|++.|+++++|.||..|.+.-...+-..+++|++++|.||.|.||.| |+++.+++..+
T Consensus 168 i~G~S~y--~r~~d~~~~reIad~vga~l~~D~aH~~GLIa~g~~~~P~~~aDvvt~tThKtlrGPrg-g~I~~~~~~~~ 244 (405)
T d1kl1a_ 168 VAAASAY--PRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRG-GMILCQEQFAK 244 (405)
T ss_dssp EECCSSC--CSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSC-EEEEECHHHHH
T ss_pred Eeccccc--ccccChHHHHHHHhhhCCEEecchhhHhhhhhhhhcCChhhhhhheeccccccccCCCC-ceEEecchhHH
Confidence 8765443 46689999999999999999999998765544333333335789999999999999997 89988877632
Q ss_pred cCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q 038499 318 LGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLP 397 (609)
Q Consensus 318 l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~ 397 (609)
++....+-| -.|.|....+++.+.+|........+...++..++++.+.+.|.+
T Consensus 245 --~i~~avfPg------------------------~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAkaLa~~L~~ 298 (405)
T d1kl1a_ 245 --QIDKAIFPG------------------------IQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQN 298 (405)
T ss_dssp --HHHHHHTTT------------------------TCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHhhhCcc------------------------cccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhc
Confidence 221110000 113333333333333333111223466778888888999999987
Q ss_pred CCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChh
Q 038499 398 NQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEA 477 (609)
Q Consensus 398 ~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~ 477 (609)
. |++|+... .....++..+.+ . .+.+....+.| ++.||.+..-. -|+-..-
T Consensus 299 ~-G~~vv~gg--Td~H~vlvdl~~-~---------------~~~g~~ae~~L-e~agI~~Nkn~---iP~d~~~------ 349 (405)
T d1kl1a_ 299 E-GFTLVSGG--TDNHLLLVDLRP-Q---------------QLTGKTAEKVL-DEVGITVNKNT---IPYDPES------ 349 (405)
T ss_dssp T-TCEEGGGS--CSSSEEEEECGG-G---------------TCCHHHHHHHH-HHHTEECEECC---CTTCSSC------
T ss_pred C-CceeecCC--Cccceeeccccc-c---------------CCcHHHHHHHH-HHcCeEEcCCc---CCCCCCC------
Confidence 6 89998642 222344444433 1 25666766767 66799876221 1211000
Q ss_pred HHHHHHHHHhhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHh
Q 038499 478 QSYQIRSAIQKGYVGVKPGWTRISFP----YYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~g~iRls~~----~~~t~eeid~ll~al~~v~~~ 524 (609)
...+..|||..+ .-+.++|+.++.+.|.+++..
T Consensus 350 --------------~~~~SGiRiGT~a~TtrG~~e~dm~~ia~~I~~~l~~ 386 (405)
T d1kl1a_ 350 --------------PFVTSGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLKN 386 (405)
T ss_dssp --------------TTTCSEEEEECHHHHHTTCCHHHHHHHHHHHHHHHTC
T ss_pred --------------CCCCCceeecCHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 002578999974 446899999999999998854
|
| >d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=99.78 E-value=5e-17 Score=168.48 Aligned_cols=314 Identities=17% Similarity=0.144 Sum_probs=197.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccc
Q 038499 114 YVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHS 193 (609)
Q Consensus 114 ~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s 193 (609)
.+++..+.....+++.|+++-|+.. .++| +||.. |+..++..+ +++|| .|+++..-|..
T Consensus 60 ~Y~R~~nPt~~~LE~~la~LEgg~~--a~~~-sSGMa-Ai~~~l~~l---------------~~~Gd--~iv~~~~~Yg~ 118 (398)
T d1qgna_ 60 EYGRYGNPTTVVLEEKISALEGAES--TLLM-ASGMC-ASTVMLLAL---------------VPAGG--HIVTTTDCYRK 118 (398)
T ss_dssp CBGGGCCHHHHHHHHHHHHHHTCSE--EEEE-SCHHH-HHHHHHHHH---------------SCSSC--EEEEETTSCHH
T ss_pred eecCCCChHHHHHHHHHHHHhCCce--EEEe-cCcch-HHHHHHhhc---------------ccccc--cccccccccch
Confidence 3455555667789999999999852 4566 48877 466555554 47899 68888888877
Q ss_pred hHHHHH----HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEe
Q 038499 194 NLLSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFD 269 (609)
Q Consensus 194 ~~~~~~----~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD 269 (609)
...-+. ..|.++..++.. +.++.++.+.. +++++|++..++|||..+.|+++|+++||++|++++||
T Consensus 119 t~~l~~~~~~~~gi~~~~~~~~-----~~~~~~~~~~~----~~t~~v~~EspsNP~l~v~Di~~ia~ia~~~g~~~vVD 189 (398)
T d1qgna_ 119 TRIFIETILPKMGITATVIDPA-----DVGALELALNQ----KKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCID 189 (398)
T ss_dssp HHHHHHHTGGGGTCEEEEECSS-----CHHHHHHHHHH----SCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred hhhhhccccccccccccccccc-----chhhhhhhhcc----ccceEEEccCccccccccchHHHHHHHHhhcCCEEEec
Confidence 655443 468888888643 45555554433 68999999999999999999999999999999999999
Q ss_pred ccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 270 FAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 270 ~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
.+.+.|+.. +++. .|+|+++.|..|+++|... .|++..+++.. ..+..
T Consensus 190 nT~atP~~~---~Pl~-~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~--~~~~~------------------------ 239 (398)
T d1qgna_ 190 GTFATPLNQ---KALA-LGADLVLHSATKFLGGHNDVLAGCISGPLKLV--SEIRN------------------------ 239 (398)
T ss_dssp CTTTCTTTC---CTTT-TTCSEEEECTTTTTTCSSSCCCEEEEECHHHH--HHHHH------------------------
T ss_pred ceeeccccC---Cchh-hCCCEEEEechhhcCcccceeehhhcchhhhh--hhhhh------------------------
Confidence 997766432 3321 2899999999999998753 57776666652 11110
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcc
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQA 413 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~ 413 (609)
..+...++.+.... - +.+....-++...++..+.+..+.+.|+++|.++ |+-|.- ....+
T Consensus 240 -~~~~~G~~l~p~~a---~--ll~rgl~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~ 313 (398)
T d1qgna_ 240 -LHHILGGALNPNAA---Y--LIIRGMKTLHLRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGG 313 (398)
T ss_dssp -HHHHHCCCCCHHHH---H--HHHHHGGGHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCS
T ss_pred -hcccCCCcCCHHHH---H--HHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCc
Confidence 01111222221111 0 1111222345556777888999999999999986 555421 11356
Q ss_pred eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCC
Q 038499 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGY 490 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~ 490 (609)
.++|.+.. +. .....+++.| +.+.+.+.-|...+ .|.......+..+... -
T Consensus 314 ~~sf~~~g-~~---------------~~a~~f~~~L-~l~~~a~SlGg~~SLi~~p~~~th~~~~~~~~~---------~ 367 (398)
T d1qgna_ 314 AVSFEVDG-DL---------------LTTAKFVDAL-KIPYIAPSFGGCESIVDQPAIMSYWDLSQSDRA---------K 367 (398)
T ss_dssp EEEEEESS-CH---------------HHHHHHHHHC-SSSEECSCCCSSSCEEECHHHHHSTTSCHHHHH---------T
T ss_pred eeeeeecC-CH---------------HHHHHHHHcC-CcceeeeCCCCCcceeeCcchhccccCCHHHHH---------h
Confidence 88887765 21 1233455555 34455555554333 2333222233332211 2
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHH
Q 038499 491 VGVKPGWTRISFPYYMSNEEFEFTLEALE 519 (609)
Q Consensus 491 ~~~~~g~iRls~~~~~t~eeid~ll~al~ 519 (609)
.|+.++.||||++.-..++=++.+-++|+
T Consensus 368 ~Gi~~~liRlSvGlEd~eDLi~Dl~~AL~ 396 (398)
T d1qgna_ 368 YGIMDNLVRFSFGVEDFDDLKADILQALD 396 (398)
T ss_dssp TTCCSSEEEEECCSSCHHHHHHHHHHHHH
T ss_pred cCCCcCEEEEEeccCCHHHHHHHHHHHHh
Confidence 46778999999997544443444444443
|
| >d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-synthase, CGS species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=2.6e-17 Score=169.99 Aligned_cols=312 Identities=16% Similarity=0.132 Sum_probs=197.3
Q ss_pred hHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchH
Q 038499 116 GQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNL 195 (609)
Q Consensus 116 ~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~ 195 (609)
++..+.....+++.|+++-|+.. .++| +||..| +..++..+ +++|| +|+++...|....
T Consensus 45 ~R~~nPt~~~le~~la~LEgg~~--a~~~-sSGMaA-i~~~l~~l---------------~~~gd--~vv~~~~~yg~t~ 103 (384)
T d1cs1a_ 45 SRRGNPTRDVVQRALAELEGGAG--AVLT-NTGMSA-IHLVTTVF---------------LKPGD--LLVAPHDCYGGSY 103 (384)
T ss_dssp TTTCCHHHHHHHHHHHHHHTCSE--EEEE-SSHHHH-HHHHHHHH---------------CCTTC--EEEEETTCCHHHH
T ss_pred cCCCCHHHHHHHHHHHHHhCCCc--eEEe-cChHHH-HHHHHhhc---------------ccccc--eecccccccchhh
Confidence 33334456778999999999852 4566 488774 65555544 47899 7888887777665
Q ss_pred HHHH----HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecc
Q 038499 196 LSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFA 271 (609)
Q Consensus 196 ~~~~----~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A 271 (609)
..+. ..|.++.++... |.+++++++. ++|++|++..++|||..+.|+++|+++||++|++++||.+
T Consensus 104 ~~~~~~~~~~g~~~~~~d~~-----d~~~~~~~~~-----~~t~~v~~EspsNP~l~v~Di~~i~~ia~~~g~~~vVDNT 173 (384)
T d1cs1a_ 104 RLFDSLAKRGCYRVLFVDQG-----DEQALRAALA-----EKPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNT 173 (384)
T ss_dssp HHHHHHHTTTSCEEEEECTT-----CHHHHHHHHH-----TCCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECT
T ss_pred hhhhhhhcccccccccccCC-----CHHHHHhhcc-----ccccEEEEeccccccceeccHHHHhhhhhhcCcEEEEecc
Confidence 4443 347777777643 7899999998 7999999999999999999999999999999999999999
Q ss_pred ccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccc
Q 038499 272 ASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIE 349 (609)
Q Consensus 272 ~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~ 349 (609)
.+.|+..-.+. .|+|+++.|..|+++|-.. .|+++.+++.. ...+.. .
T Consensus 174 ~atP~~~~Pl~----~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~-~~~~~~-------------------------~ 223 (384)
T d1cs1a_ 174 FLSPALQNPLA----LGADLVLHSCTKYLNGHSDVVAGVVIAKDPDV-VTELAW-------------------------W 223 (384)
T ss_dssp TTCTTTCCGGG----GTCSEEEEETTTTTTCSSCCCCEEEEESSHHH-HHHHHH-------------------------H
T ss_pred ccCcccccccc----cCCCEEEEccccccccCCCcccccccCCchhh-hhhhhh-------------------------h
Confidence 87765433222 2899999999999997653 67777765441 011100 0
Q ss_pred ccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCC--C-----------CCCcceE
Q 038499 350 ERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNT--S-----------TKRQAIL 415 (609)
Q Consensus 350 ~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~--~-----------~~r~~~~ 415 (609)
.+...++.+... +-+ .+....-+....++..+.+..+.+.|+.+|.++ |+-|. + ....+.+
T Consensus 224 ~~~~G~~~~p~~---a~l--l~rgL~TL~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~h~l~~r~~~g~gg~~ 298 (384)
T d1cs1a_ 224 ANNIGVTGGAFD---SYL--LLRGLRTLVPRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAML 298 (384)
T ss_dssp HHHHTCBCCHHH---HHH--HHHHHTTHHHHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEE
T ss_pred hhhhhhcccccc---HHH--HhhccchhHHHHHHHHHHHHHHHHhcccCCceeeeeeccccchhHHHHHHhhcCCCccee
Confidence 111112221111 111 111222355566778888999999999999884 55442 1 1135678
Q ss_pred EEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCC
Q 038499 416 SFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVG 492 (609)
Q Consensus 416 ~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~ 492 (609)
+|.+.. +. -....+++.| +.+.+.+.-|+..+ .|.......+.++.... .|
T Consensus 299 sf~l~~-~~---------------~~a~~f~~~L-~l~~~a~SlGg~eSLi~~p~~~th~~~~~e~r~~---------~G 352 (384)
T d1cs1a_ 299 SFELDG-DE---------------QTLRRFLGGL-SLFTLAESLGGVESLISHAATMTHAGMAPEARAA---------AG 352 (384)
T ss_dssp EEEESS-CH---------------HHHHHHHHTC-SSSEEBSCCCSSSCEEEEGGGTTTTTSCHHHHHH---------HT
T ss_pred EEeecc-hH---------------HHHHHHHHhC-CcceeccccCCccceeccccccccccCCHHHHHh---------cC
Confidence 888765 21 0123444444 34555555554422 13222222333322211 35
Q ss_pred CCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 493 VKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 493 ~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
+.++.||||++.-. ++.+++-|+..++
T Consensus 353 i~~~lvRlSvGlEd----~eDLi~Dl~~AL~ 379 (384)
T d1cs1a_ 353 ISETLLRISTGIED----GEDLIADLENGFR 379 (384)
T ss_dssp CCTTEEEEECCSSC----HHHHHHHHHHHHH
T ss_pred CCcCeEEEEeccCC----HHHHHHHHHHHHH
Confidence 67899999999744 4444555544443
|
| >d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=99.77 E-value=1.1e-17 Score=172.80 Aligned_cols=307 Identities=15% Similarity=0.158 Sum_probs=196.0
Q ss_pred HHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH
Q 038499 120 TNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR 199 (609)
Q Consensus 120 ~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (609)
+...+.+++.|+++-|+.. .++| +||.. ||..++.. +++|| +|+++...|......++
T Consensus 48 nPt~~~le~~la~LE~~~~--a~~f-sSGMa-Aisall~l----------------l~~Gd--~vv~~~~~Yg~t~~l~~ 105 (380)
T d1ibja_ 48 NPTRDALESLLAKLDKADR--AFCF-TSGMA-ALSAVTHL----------------IKNGE--EIVAGDDVYGGSDRLLS 105 (380)
T ss_dssp CHHHHHHHHHHHHHHTCSE--EEEE-SSHHH-HHHHHHTT----------------SCTTC--EEEEESSCCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHcCCce--EEeh-hhHHH-HHHHHHHh----------------hCCCC--EEEEEecccccccchhh
Confidence 3446778999999999852 4666 48875 57655432 47999 68888888888776654
Q ss_pred H----cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCC
Q 038499 200 Q----SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 200 ~----~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~ 275 (609)
. .|.++..+..+ ++++++++++ ++|++|++..++||+..+.|+++|+++||++|++++||.+.+.|
T Consensus 106 ~~~~~~gi~~~~~d~~-----~~~~~~~ai~-----~~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vVDnT~atP 175 (380)
T d1ibja_ 106 QVVPRSGVVVKRVNTT-----KLDEVAAAIG-----PQTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSP 175 (380)
T ss_dssp HTSGGGTCEEEEECTT-----SHHHHHHHCC-----SSEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCT
T ss_pred hhhccccccccccCcc-----hHHHHHHHhc-----cCccEEEeccccccccccccHHHHHHHHHHcCCeEEeecccccc
Confidence 3 68888888754 7899999998 78999999999999999999999999999999999999998776
Q ss_pred cccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccccccccc
Q 038499 276 YVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERES 353 (609)
Q Consensus 276 ~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~ 353 (609)
+..-.+. .|+|+++.|..|+++|-.. .|+++.+++.. ...+.. ..+..
T Consensus 176 ~~~~Pl~----~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~-~~~~~~-------------------------~~~~~ 225 (380)
T d1ibja_ 176 VLSRPLE----LGADIVMHSATKFIAGHSDVMAGVLAVKGEKL-AKEVYF-------------------------LQNSE 225 (380)
T ss_dssp TTCCGGG----TTCSEEEEETTTTTTCSSCCCCEEEEECSHHH-HHHHHH-------------------------HHHHT
T ss_pred ccccccc----cCCCEEEecccceeccccCccccccccchhhH-HHHHHh-------------------------hcccc
Confidence 5433332 2899999999999998643 68878776541 111100 01111
Q ss_pred CCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcceEEEEe
Q 038499 354 GGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQAILSFNI 419 (609)
Q Consensus 354 ~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~~~~f~~ 419 (609)
.++++..... +.+....-++...++..+.+..+.+.|+++|.++ |+-|.- ....+.++|.+
T Consensus 226 G~~l~p~~a~-----ll~rgl~Tl~lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~a~~~~~~~g~~~s~~~ 300 (380)
T d1ibja_ 226 GSGLAPFDCW-----LCLRGIKTMALRIEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFIT 300 (380)
T ss_dssp TCBCCHHHHH-----HHHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEEC
T ss_pred CCcCCHHHHH-----HHHhcchhhhhhHHHHHHHHHHHHHHHHhCCCeeEEeccccccCccccccccccccccccccccc
Confidence 2222221110 1111223456666778888999999999998875 544421 11334555543
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCc
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPG 496 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g 496 (609)
.. . .....+.+.| +.+.+.+.-|...+ .|.......+.++. ....|+.++
T Consensus 301 ~~-~----------------~~a~~f~d~l-~l~~~a~SlG~~~SLi~~p~~~th~~~~~e~---------r~~~Gi~~~ 353 (380)
T d1ibja_ 301 GS-V----------------ALSKHLVETT-KYFSIAVSFGSVKSLISMPCFMSHASIPAEV---------REARGLTED 353 (380)
T ss_dssp SC-H----------------HHHHHHHHHC-SSSEECSCCCSSSCEEECTTTTTTCSCCSSS---------SSSSSCCTT
T ss_pred cH-H----------------HHHHHHHHhC-CcCeEeeccCCccccccCchhhhhhcCCHHH---------HHHcCCCcC
Confidence 32 1 1233444444 34555555554322 12211111222111 112467789
Q ss_pred EEEEecCCCCCHHHHHHHHHHHHHHHHh
Q 038499 497 WTRISFPYYMSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 497 ~iRls~~~~~t~eeid~ll~al~~v~~~ 524 (609)
.||||+|. |+.+.+++.|++.++.
T Consensus 354 lvRlSvGl----E~~eDLi~Dl~qAl~~ 377 (380)
T d1ibja_ 354 LVRISAGI----EDVDDLISDLDIAFKT 377 (380)
T ss_dssp CEEEECCS----SCHHHHHHHHHHHHHS
T ss_pred eEEEEecc----CCHHHHHHHHHHHHHh
Confidence 99999996 4455556665555543
|
| >d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Aminotransferase homolog WlaK (PglE, Cj1121c) species: Campylobacter jejuni [TaxId: 197]
Probab=99.75 E-value=6.5e-17 Score=168.41 Aligned_cols=338 Identities=13% Similarity=0.009 Sum_probs=200.0
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
..+++++.+++++|.. ..++|+|||+ |+.+++.+++ +++|| +|++++++|.+...++...
T Consensus 22 ~~~~fE~~~~~~~~~~---~~~~~~SgT~-Al~lal~~l~--------------~~~gd--eVi~p~~t~~a~~~~~~~~ 81 (374)
T d1o69a_ 22 FVNRFEQSVKDYSKSE---NALALNSATA-ALHLALRVAG--------------VKQDD--IVLASSFTFIASVAPICYL 81 (374)
T ss_dssp HHHHHHHHHHHHHCCS---EEEEESCHHH-HHHHHHHHTT--------------CCTTC--EEEEESSSCGGGTHHHHHT
T ss_pred HHHHHHHHHHHHHCcC---eEEEeCCHHH-HHHHHHHHcC--------------CCCcC--EEEeCCcchHhhHHHHhhc
Confidence 4778899999999996 5677767777 5778888876 68898 7999999999999999999
Q ss_pred CceEEEEecCCCCCCCHHHHH---HHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCccc
Q 038499 202 LAEVVEIGLDDDGLLDIEALR---SKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVE 278 (609)
Q Consensus 202 G~~vv~v~~~~~g~ld~e~L~---~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~ 278 (609)
|++++.++++++......+.. ..+. .+++++++.+ ..|...|+++|.++|+++|+++|.|+||+.|...
T Consensus 82 g~~pv~~Di~~~~~~~~~~~~~~~~~~~-----~~~~aii~~~---~~G~~~d~~~i~~~~~~~~i~vIED~a~a~g~~~ 153 (374)
T d1o69a_ 82 KAKPVFIDCDETYNIDVDLLKLAIKECE-----KKPKALILTH---LYGNAAKMDEIVEICKENDIVLIEDAAEALGSFY 153 (374)
T ss_dssp TCEEEEECBCTTSSBCHHHHHHHHHHCS-----SCCCEEEEEC---GGGCCCCHHHHHHHHHHTTCEEEEECTTCTTCEE
T ss_pred cceeEecccccccccccccccccchhcc-----cccccccccc---cccchhhhHHHHHHhhccCcchhhhhhhhhcceE
Confidence 999999999875433333333 2333 5788877765 5699999999999999999999999999987543
Q ss_pred ccCCCCCCCCccEEEEcCC--CCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 279 IDVRSGQTDGYDAIFLSTH--KFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 279 id~~~~~~~~~D~v~~S~h--K~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
-. ...+. .-|+.++|+| |.+++.+| |+++++++-. .+.+......+.. . ... ......|.
T Consensus 154 ~~-~~~G~-~gd~~~fSf~~~K~l~tgeG-G~i~tnn~~~-~~~~~~~~~~g~~--------~-~~~-----~~~~~~G~ 215 (374)
T d1o69a_ 154 KN-KALGT-FGEFGVYSYNGNKIITTSGG-GMLIGKNKEK-IEKARFYSTQARE--------N-CLH-----YEHLDYGY 215 (374)
T ss_dssp TT-EETTS-SSSEEEEECCTTSSSCCSSC-EEEEESCHHH-HHHHHHHTBTCCC--------S-SSS-----CCCSSCCC
T ss_pred CC-eecCC-CCceEEEeccCccccccccc-eeehhhhHHH-HHhhccccccccc--------c-ccc-----cccccCCc
Confidence 22 22211 1277777765 99986555 8888875431 1111111111100 0 000 00011222
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCC--C-C--
Q 038499 357 PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLG--E-N-- 431 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~--~-~-- 431 (609)
..-+.-+.|++... +....+.+.++.+++++++.+.|.....+. ..........++.+.+.. ....... . +
T Consensus 216 N~rm~ei~Aaig~~--qL~~l~~~i~~r~~i~~~y~~~L~~~~~~~-~~~~~~~s~~~~~~~~~~-~~~~~~~~~~~~~~ 291 (374)
T d1o69a_ 216 NYRLSNVLGAIGVA--QMEVLEQRVLKKREIYEWYKEFLGEYFSFL-DELENSRSNRWLSTALIN-FDKNELNACQKDIN 291 (374)
T ss_dssp BCBCCHHHHHHHHH--HHTTHHHHHHHHHHHHHHHHHHHTTTEECC-CCCTTEECCCSSEEEEES-CCGGGSCCCCEEEE
T ss_pred cccccchhhhhhHH--HHhhhhhhcchhHHHHHHHHhhcccccccc-ccccCCCCChhheeeeec-cccccccccccccc
Confidence 11111122222222 233567777788888999999998753221 111111111222222221 0000000 0 0
Q ss_pred CCCCC-CCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC---ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCC
Q 038499 432 TKTET-DKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL---DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMS 507 (609)
Q Consensus 432 ~~~~~-~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i---~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t 507 (609)
..... ...-..+.+.+.|.+ .||.+|.....-. ....+... ..+.++.+. ...+.|.+++.+|
T Consensus 292 ~~~~~~~~~~~r~~l~~~L~~-~gI~~r~~y~pl~-~~~~~~~~~~~~~pna~~~~-----------~~~i~LP~~~~lt 358 (374)
T d1o69a_ 292 ISQKNITLHPKISKLIEDLKN-KQIETRPLWKAMH-TQEVFKGAKAYLNGNSELFF-----------QKGICLPSGTAMS 358 (374)
T ss_dssp CCCCCCCCCHHHHHHHHHHHH-TTCCCBCCCCCGG-GCGGGTTCEEEECSHHHHHH-----------HHEEEECCCTTCC
T ss_pred cchhhccchhhHHHHHHHHHH-CCCCEEEeCcchh-hChhhhcCCCCCCHHHHHHH-----------hCEEECcCCCCCC
Confidence 00000 001135678888865 6999986532110 00011111 113333332 3679999999999
Q ss_pred HHHHHHHHHHHHHHH
Q 038499 508 NEEFEFTLEALEFIA 522 (609)
Q Consensus 508 ~eeid~ll~al~~v~ 522 (609)
++|++++++.|.+++
T Consensus 359 ~~di~~I~~~I~~~l 373 (374)
T d1o69a_ 359 KDDVYEISKLILKSI 373 (374)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
|
| >d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Leishmania major [TaxId: 5664]
Probab=99.75 E-value=1.6e-17 Score=166.68 Aligned_cols=322 Identities=14% Similarity=0.039 Sum_probs=179.3
Q ss_pred CCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccc
Q 038499 85 ASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAV 164 (609)
Q Consensus 85 a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~ 164 (609)
..|+ ++.|++++.+..+.. ..+++..+..+++|+.+++++|++++ +|+||+ |+|++++.++..+
T Consensus 9 ~~g~-~P~v~eAl~~~~~~~---------~~~y~~~~~~~~lr~~ia~~~g~~~~-~v~~ts-ggtean~~a~~~~---- 72 (340)
T d1svva_ 9 SVGM-HPKILDLMARDNMTQ---------HAGYGQDSHCAKAARLIGELLERPDA-DVHFIS-GGTQTNLIACSLA---- 72 (340)
T ss_dssp SSCC-CHHHHHHHHHHTTCC---------CCSTTCSHHHHHHHHHHHHHHTCTTS-EEEEES-CHHHHHHHHHHHH----
T ss_pred CCCC-CHHHHHHHHHHhhcC---------CCCCCCCHHHHHHHHHHHHHhCCCcc-eEEEcC-CHHHHHHHHHHHH----
Confidence 3355 456999998754421 12233456678999999999999876 899995 4555666665554
Q ss_pred hhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH--HcCceEEEEecCCCCCCCHHHHHHHHhhhccC-CCceEEEEec
Q 038499 165 PSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR--QSLAEVVEIGLDDDGLLDIEALRSKLELYKDA-KRPILGSFSA 241 (609)
Q Consensus 165 ~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~--~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~-~~~~lv~~s~ 241 (609)
..+++ .+++....|++...... ..+.....+... .+..+.+...++....... ..+..+.++.
T Consensus 73 -----------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (340)
T d1svva_ 73 -----------LRPWE--AVIATQLGHISTHETGAIEATGHKVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYIS 138 (340)
T ss_dssp -----------CCTTE--EEEEETTSHHHHSSTTHHHHTTCCEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEE
T ss_pred -----------hhhcc--ccccccccceeeeecccccccceeeeecccc-cccccchhHHHHhhhhhcccCCcceeeeec
Confidence 35666 57777777766543322 233333333322 2334445444444321111 1223444444
Q ss_pred ccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcccccCCCCC----CCCccEEEEcCCCCCCCCCCcEEEEEech
Q 038499 242 CSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQ----TDGYDAIFLSTHKFLGGPGSPGILLMTKA 314 (609)
Q Consensus 242 ~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~----~~~~D~v~~S~hK~lggp~g~G~L~~~~~ 314 (609)
..|.+|.+.+ +..+.+.|+++|+++++|.++..+....+..... ....+....+..|..+++. .++......
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~d~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 217 (340)
T d1svva_ 139 NTTEVGTQYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFG-EALIILNDA 217 (340)
T ss_dssp SSCTTSCCCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSC-EEEEECSGG
T ss_pred ccccccccccHHHhhhhhcccccccceeeeeccceeeeecccccccccccccccceeeecCCcccccccc-ccccccchh
Confidence 4455555544 5567889999999999999976544443332210 0123566667777655433 233332222
Q ss_pred hhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Q 038499 315 LYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALER 394 (609)
Q Consensus 315 ~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~ 394 (609)
. .....+ ......++.+......+++...+ +..+.....++...++.++.+.
T Consensus 218 ~--~~~~~~-------------------------~~~~~~~~~~~~~~~~aa~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 269 (340)
T d1svva_ 218 L--KPNARH-------------------------LIKQRGALMAKGWLLGIQFEVLM-KDNLFFELGAHSNKMAAILKAG 269 (340)
T ss_dssp G--CTTHHH-------------------------HHHHTTCCCTTTHHHHHHHHHHT-STTHHHHHHHHHHHHHHHHHHH
T ss_pred h--hhhhhh-------------------------hcccccCccchhhHHHHHHHHHh-hhhHHHHHHHHHHHHHhhhHHH
Confidence 2 111000 11112223222222222222221 3445566777888888888888
Q ss_pred hCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCC
Q 038499 395 LLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDL 474 (609)
Q Consensus 395 L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i 474 (609)
|+.. |++++.+. ..+++.+.+ + ..+...|.+. ++....+.. +.
T Consensus 270 l~~~-g~~~~~p~---~~~~v~~~~-~---------------------~~~~~~l~~~-~~~~~~~~~---~~------- 312 (340)
T d1svva_ 270 LEAC-GIRLAWPS---ASNQLFPIL-E---------------------NTMIAELNND-FDMYTVEPL---KD------- 312 (340)
T ss_dssp HHHT-TCCBSSCC---SSSEECBEE-E---------------------HHHHHHHTTT-EECEEEEEE---TT-------
T ss_pred HhcC-CCeeecCC---CceEEEEeC-C---------------------HHHHHHHHHh-hhhhccccc---CC-------
Confidence 8875 88887663 334443333 2 2455666554 332221100 10
Q ss_pred ChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHH
Q 038499 475 DEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFI 521 (609)
Q Consensus 475 ~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v 521 (609)
.++++|+|+++++|++|||+++++|+++
T Consensus 313 -------------------~~~~vR~s~~~~~t~edid~~l~~l~~l 340 (340)
T d1svva_ 313 -------------------GTCIMRLCTSWATEEKECHRFVEVLKRL 340 (340)
T ss_dssp -------------------TEEEEEEECCTTCCHHHHHHHHHHHHHC
T ss_pred -------------------CCcEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 2589999999999999999999999874
|
| >d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]
Probab=99.75 E-value=3.9e-18 Score=179.60 Aligned_cols=335 Identities=13% Similarity=0.079 Sum_probs=199.6
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEEeCC-hHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG------GQEDAMIFCGS-GTTA 151 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~------~~~~~vift~s-Gtta 151 (609)
+|.|.....+.++.|.++..+.+..- ..|. |....+ ..++|+.+++++.. +++ .|+.+++ +++.
T Consensus 37 ~~~d~~~~~~~~~~V~~a~~~~~~~~--~~~~--Y~~~~G----~~~lr~aia~~~~~~~~~~~~~~-~i~~~~~~~~~g 107 (401)
T d7aata_ 37 AYRDDNGKPYVLNCVRKAEAMIAAKK--MDKE--YLPIAG----LADFTRASAELALGENSEAFKSG-RYVTVQGISGTG 107 (401)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHTT--CCCC--CCCTTC----CHHHHHHHHHHHHCTTCHHHHTT-CEEEEEEEHHHH
T ss_pred CCcCCCCCCCCCHHHHHHHHHHhhCC--CCCC--CCCCCC----CHHHHHHHHHHHhccCCcccCcC-ceEEeccchHHH
Confidence 35666666677788888876655321 1121 222222 44566666665532 233 5555432 3333
Q ss_pred H---HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHh
Q 038499 152 A---IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLE 226 (609)
Q Consensus 152 a---l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~ 226 (609)
+ +..+++.+ ++||| .|+++.+.|+.+...++..|++++.+++.+ ++..+++.+.+.+.
T Consensus 108 ~~~~~~~~~~~l---------------~~pGd--~Vlv~~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (401)
T d7aata_ 108 SLRVGANFLQRF---------------FKFSR--DVYLPKPSWGNHTPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDIS 170 (401)
T ss_dssp HHHHHHHHHHHH---------------CTTCC--EEEEEESCCTTHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHT
T ss_pred HHHHHHHhhHhh---------------cCCCc--eEEEecCCCcchhhHHHHcCCeEEEEeccccccccccHHHHHHHHh
Confidence 3 33334433 58999 799999999999999999999999999753 46789999888886
Q ss_pred hhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc-cc--cC---CCC-CCCCccEEEEcC
Q 038499 227 LYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV-EI--DV---RSG-QTDGYDAIFLST 296 (609)
Q Consensus 227 ~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~-~i--d~---~~~-~~~~~D~v~~S~ 296 (609)
.. .++++++++++++||||.+.+ +++|+++|++|+++++.|+++..-.- .. +. ... .....-+++.|+
T Consensus 171 ~~--~~~~~~iii~~p~NPTG~~~s~e~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 248 (401)
T d7aata_ 171 KI--PEKSIILLHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSY 248 (401)
T ss_dssp TS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEEC
T ss_pred cC--CCceEEEEecCCCCCccccCCHHHHHHHHHHHhcceEEEEEeccchhhhcCCcccchhhhhhhhhhhcccceeEec
Confidence 31 257899999999999999987 56789999999999999999764221 10 00 000 001223566788
Q ss_pred CCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHH-HH--HHHH
Q 038499 297 HKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAA-LA--FWVK 372 (609)
Q Consensus 297 hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aa-l~--~~~~ 372 (609)
+|.++-++ .+|++++..... +..... .............+.+...+.+.+. +. .+.+
T Consensus 249 sk~~~~~G~RiG~~~~~~~~~--~~~~~~-----------------~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~ 309 (401)
T d7aata_ 249 AKNMGLYGERAGAFTVICRDA--EEAKRV-----------------ESQLKILIRPMYSNPPMNGARIASLILNTPELRK 309 (401)
T ss_dssp TTTSCCGGGCEEEEEEECSSH--HHHHHH-----------------HHHHHHHHHHHHSSCCHHHHHHHHHHHHCHHHHH
T ss_pred cccceeeccccceeecchHHH--HHHHHH-----------------HHHHHHHhhccccccchHHHHHHHHhcCCHHHHH
Confidence 88877553 599999988762 111000 0000000111112333333332211 10 0000
Q ss_pred H-hcCHHHHHHHHHHHHHHHHHHhCCCCc---eEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHH
Q 038499 373 E-YIGHEVIKKQEETYIERALERLLPNQN---IKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATL 448 (609)
Q Consensus 373 ~-~~g~~~i~~~~~~l~~~~~~~L~~~p~---i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~ 448 (609)
+ ....+.++++..+.++.+.+.|+++.. +..+.+ ..+.|+|. + ++. ++++.
T Consensus 310 ~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~----~~G~F~~~--~------------------ls~-e~~~~ 364 (401)
T d7aata_ 310 EWLVEVKGMADRIISMRTQLVSNLKKEGSSHNWQHITD----QIGMFCFT--G------------------LKP-EQVER 364 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHH----CCSSEEEC--C------------------CCH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceECC----CCeEEEec--C------------------CCH-HHHHH
Confidence 0 112345566666777788888876421 222222 34566553 2 234 44566
Q ss_pred HhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 449 LNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 449 L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
|.+++||.+.+| +|||+.. .++++|+++.++|.++++
T Consensus 365 L~~e~gV~~~pg-------------------------------------~Ris~a~-~~~~~i~~la~ai~~v~k 401 (401)
T d7aata_ 365 LTKEFSIYMTKD-------------------------------------GRISVAG-VASSNVGYLAHAIHQVTK 401 (401)
T ss_dssp HHHHHCEECCTT-------------------------------------CEEEGGG-CCTTTHHHHHHHHHHHHC
T ss_pred HHHhCCEEECCC-------------------------------------cEEEecc-CCHHHHHHHHHHHHHHhC
Confidence 667789987632 4999853 577889999999998863
|
| >d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: O-acetyl-L-homoserine sulfhydrylase species: Thermus thermophilus [TaxId: 274]
Probab=99.74 E-value=4.5e-16 Score=162.20 Aligned_cols=363 Identities=15% Similarity=0.084 Sum_probs=207.5
Q ss_pred ceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHH
Q 038499 77 RLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRL 156 (609)
Q Consensus 77 ~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l 156 (609)
+.||...+-.-..+....+.... ... .+.+++..+.....+++.|+++-|+.. .++| +||.. |+..+
T Consensus 23 pPI~~sstf~~~~~~~~~~~~~~--------~~~-~~~YsR~~nPT~~~LE~~la~LE~~~~--a~~~-~SGma-Ai~~~ 89 (421)
T d2ctza1 23 VPIYPTTSYVFKSPEHAANLFAL--------KEF-GNIYSRIMNPTVDVLEKRLAALEGGKA--ALAT-ASGHA-AQFLA 89 (421)
T ss_dssp CCBCCCSCBCCSCHHHHHHHHTT--------TTG-GGSCBTTBCHHHHHHHHHHHHHHTCSE--EEEE-SSHHH-HHHHH
T ss_pred CCccCCCCeecCCHHHHHHhhcC--------CcC-CceecCCCCHHHHHHHHHHHHHhCCCe--EEEe-cChHH-HHHHH
Confidence 45776666544555443333211 011 122344444556778999999999863 4566 48886 45555
Q ss_pred HHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHH----HHcCceEEEEecCCCCCCCHHHHHHHHhhhccCC
Q 038499 157 QEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSW----RQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAK 232 (609)
Q Consensus 157 ~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~----~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~ 232 (609)
+..+ +++|| +|+++..-|.....-+ ...|+++..++.+. ..+..++.++ +
T Consensus 90 ~~~l---------------~~~gd--~il~~~~~Yg~t~~l~~~~~~~~gi~~~~~d~~~----~~~~~~~~~~-----~ 143 (421)
T d2ctza1 90 LTTL---------------AQAGD--NIVSTPNLYGGTFNQFKVTLKRLGIEVRFTSREE----RPEEFLALTD-----E 143 (421)
T ss_dssp HHHH---------------CCTTC--EEEECSCCCHHHHHHHHTHHHHTTCEEEECCTTC----CHHHHHHHCC-----T
T ss_pred HHhh---------------ccccc--ceeecCCcCCchhHHHHHHHhhccccceeccccc----CcchhccccC-----C
Confidence 5444 47899 7999988887765444 35799998876431 3455566666 7
Q ss_pred CceEEEEecccCccccccCHHHHHHHHHHhCCeEEEecccc-CCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEE
Q 038499 233 RPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAAS-GPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGIL 309 (609)
Q Consensus 233 ~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~-~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L 309 (609)
+|++|++..|+|||..+.|+++|+++||++|++++||.+.+ .|+..-++. .|+|+++-|..|+++|-.. .|++
T Consensus 144 ~t~li~~EtpsNP~l~v~Di~~i~~iA~~~g~~~vvDnT~a~tP~~~~Pl~----~GaDiVvhS~TKyl~GHsD~l~G~v 219 (421)
T d2ctza1 144 KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLLRPLA----WGAALVTHSLTKWVGGHGAVIAGAI 219 (421)
T ss_dssp TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSCCGGG----GTCSEEEEETTTTTTCSSCCCCEEE
T ss_pred CceEEEEcCCCcceeEecchHHHHHHHHhcCCceEecccccccceeccccc----cCCcEEEEechhhccCCCCeEEEEE
Confidence 89999999999999999999999999999999999999976 454322222 2899999999999998643 6888
Q ss_pred EEechhhccCCCCC-Cc----cCCCceEeecccccccccccccc---cccccCCChhHHHHHHHHHHHHHHHhcCHHHHH
Q 038499 310 LMTKALYQLGSFPP-ST----CGGGTVNYVNGFNEKDTLYLEDI---EERESGGTPQVIQMIRAALAFWVKEYIGHEVIK 381 (609)
Q Consensus 310 ~~~~~~~~l~~~~p-~~----~ggg~v~~~~~~~~~~~~~~~~~---~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~ 381 (609)
+.+++... ...+. .. ++...+.+...+ ....++... ..+..+++.+-.. +- +.+....-+....
T Consensus 220 v~~~~~~~-~~~r~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~G~~~sP~~---a~--l~~rgl~TL~lRm 291 (421)
T d2ctza1 220 VDGGNFPW-EGGRYPLLTEPQPGYHGLRLTEAF--GELAFIVKARVDGLRDQGQALGPFE---AW--VVLLGMETLSLRA 291 (421)
T ss_dssp EECSCSCC-TTTTCHHHHSCBGGGTTBCHHHHH--GGGHHHHHHHHTHHHHHCCCCCHHH---HH--HHHHHHTTHHHHH
T ss_pred EcCCcchh-hhcccccccCCchhhhhhHHHHHh--ccHHHHHHHHHHHHHhccCCCCHHH---HH--HHhcCCcchhhHH
Confidence 87766510 11110 00 000000000000 000000000 0000111111111 00 1111222355666
Q ss_pred HHHHHHHHHHHHHhCCCCce-EEeCCCC-------------C-CCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHH
Q 038499 382 KQEETYIERALERLLPNQNI-KILGNTS-------------T-KRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVA 446 (609)
Q Consensus 382 ~~~~~l~~~~~~~L~~~p~i-~v~~~~~-------------~-~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 446 (609)
++..+.+..+.+.|+++|.+ +|+-|.- . ...++++|.+.. +. -....+.
T Consensus 292 ~~~~~nA~~vA~~L~~hp~V~~V~yPgL~s~p~~~~a~~~~~g~~G~~~sf~l~~-~~---------------~~a~~f~ 355 (421)
T d2ctza1 292 ERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKG-GY---------------EAAKRFI 355 (421)
T ss_dssp HHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETT-HH---------------HHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCeeEEecCCcCCCccHHHHHHhcCCCCceEEEEEecC-CH---------------HHHHHHH
Confidence 77788899999999999998 5655521 1 135588888865 21 0123344
Q ss_pred HHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 447 TLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 447 ~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
+.| +.+.+.+.-|...+ .|.......+.++.-.. .|+.++.||||++.- +.+.+++-|++
T Consensus 356 ~~L-~l~~~a~SlGg~eSLi~~pa~~th~~~~~e~r~~---------~GI~~~liRlSvGlE----d~eDLi~DL~q 418 (421)
T d2ctza1 356 SRL-KLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQ---------AGVSPEMVRLSVGLE----HVEDLKAELKE 418 (421)
T ss_dssp HTC-SSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHH---------HTCCTTEEEEECCSS----CHHHHHHHHHH
T ss_pred HcC-CcCeeccccccccceeeCcccccchhCCHHHHHh---------cCCCcCeEEEEeccC----CHHHHHHHHHH
Confidence 444 34555555554322 13322222333322111 356789999999964 44445555544
|
| >d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL1 [TaxId: 5722]
Probab=99.74 E-value=1.1e-16 Score=166.07 Aligned_cols=317 Identities=14% Similarity=0.076 Sum_probs=201.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+++........+++.|+++-|+.. .++|. ||.. |+..++..+ +++|| +|+++...|...
T Consensus 53 YsR~~nPT~~~le~~la~LEg~~~--a~~~s-SGma-Ai~~~~l~l---------------~~~gd--~vv~~~~~yg~t 111 (394)
T d1e5ea_ 53 YTRLGNPTVSNLEGKIAFLEKTEA--CVATS-SGMG-AIAATVLTI---------------LKAGD--HLISDECLYGCT 111 (394)
T ss_dssp BTTTCCHHHHHHHHHHHHHHTCSE--EEEES-SHHH-HHHHHHHHH---------------CCTTC--EEEEESCCCHHH
T ss_pred ecCCCCHHHHHHHHHHHHHhCCcc--eeeec-cchH-HHHHHHHhh---------------ccccc--ccccccceeehh
Confidence 444445567788999999999863 46664 7776 566554444 47899 788888888765
Q ss_pred HHH----HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHH-hCCeEEEe
Q 038499 195 LLS----WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQ-YGGFACFD 269 (609)
Q Consensus 195 ~~~----~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~-~g~~vivD 269 (609)
... +...|+++..++.. |+++++++++ +++++|++..++||+..+.|++++++++++ +|+++++|
T Consensus 112 ~~~~~~~~~~~gi~~~~~d~~-----d~~~~~~~i~-----~~t~lv~~Etp~NP~l~v~Di~~~~~~~~~~~g~~vvvD 181 (394)
T d1e5ea_ 112 HALFEHALTKFGIQVDFINTA-----IPGEVKKHMK-----PNTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIAD 181 (394)
T ss_dssp HHHHHTHHHHTTCEEEEECTT-----STTHHHHHCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEE
T ss_pred hHhHHHHhhccceeeeccCCC-----CHHHHHHhhc-----ccccEEEEeccCCcceeeehhhhhhhccccccCeEEEec
Confidence 543 34579999999865 6788999998 789999999999999999999999887765 68999999
Q ss_pred ccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeeccccccccccccc
Q 038499 270 FAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLED 347 (609)
Q Consensus 270 ~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~ 347 (609)
.+.+.|... +++. .|+|+++.|..|+++|-.. .|+++++++.....+....
T Consensus 182 nT~atP~~~---~Pl~-~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~----------------------- 234 (394)
T d1e5ea_ 182 NTFCSPMIT---NPVD-FGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGI----------------------- 234 (394)
T ss_dssp CTTTCTTTC---CGGG-GTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCC-----------------------
T ss_pred CcccCcccC---Cchh-cCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHH-----------------------
Confidence 997766432 2221 2899999999999998643 6888888776310001000
Q ss_pred ccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCcc
Q 038499 348 IEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQA 413 (609)
Q Consensus 348 ~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~~ 413 (609)
.+..+++++.... -+ .+....-+....++..+.+..+.+.|+++|.++ |+-|.- ....+
T Consensus 235 --~~~~G~~lsp~~a---~l--l~rgl~TL~lRm~r~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~G~ 307 (394)
T d1e5ea_ 235 --KDITGSVISPHDA---WL--ITRGLSTLNIRMKAESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGS 307 (394)
T ss_dssp --CCCCCCCCCHHHH---HH--HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCS
T ss_pred --HHhhCCCCChHHH---HH--HHhhchhHHHHHHHHHHHHHHHHHHHhhcCCccEEeCCCcccccchhhhhcccccCCC
Confidence 0111222222111 11 111223455666778888999999999999984 655421 11366
Q ss_pred eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCC
Q 038499 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGY 490 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~ 490 (609)
.++|.+.. +. -....+++.| +.+.+.+.-|..-+ .|.......+.++....
T Consensus 308 ~~sf~~~~-~~---------------~~a~~f~~~l-~l~~~a~SlGg~eSLi~~p~~~th~~~~~~~r~~--------- 361 (394)
T d1e5ea_ 308 MITFILKS-GF---------------EGAKKLLDNL-KLITLAVSLGGCESLIQHPASMTHAVVPKEEREA--------- 361 (394)
T ss_dssp EEEEEETT-HH---------------HHHHHHHHTC-SSSEESSCCCSSSCEEECGGGTTTTTSCHHHHHH---------
T ss_pred eeeeeccC-CH---------------HHHHHHHHhC-CccceeeccCCccceeECccccccccCCHHHHHh---------
Confidence 78887765 21 0123344444 34444455453322 23322222333332221
Q ss_pred CCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 491 VGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 491 ~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
.|+.++.||||++.-..++=++.+-++|+.+.
T Consensus 362 ~Gi~~~liRlSVGlEd~eDLi~Dl~qAl~~l~ 393 (394)
T d1e5ea_ 362 AGITDGMIRLSVGIEDADELIADFKQGLDALL 393 (394)
T ss_dssp TTCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred cCCCcCEEEEEeccCCHHHHHHHHHHHHHHhh
Confidence 36678999999997655555666666665543
|
| >d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=99.73 E-value=1.6e-16 Score=165.54 Aligned_cols=356 Identities=15% Similarity=0.126 Sum_probs=223.9
Q ss_pred CCChHHHHHHHHHhhcCCccC--CCCCCchhhHHH-HHHHHHHHHHHHHHhCCCCCC--cEEEeCChHHHHHHHHHHHhc
Q 038499 87 GRSLRYIENYIINNVLPFYGN--THTCDSYVGQHT-TNMVHEASNYIKKCLGGGQED--AMIFCGSGTTAAIKRLQEVMG 161 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n--~~~~~~~~~~~~-~~~~~e~r~~ia~~~g~~~~~--~vift~sGttaal~~l~~~l~ 161 (609)
...++.|.+++...+...|+- |+.. ++.|... .++...+.+..+++||+++.. .-+-.-||+.+++..+...
T Consensus 41 N~~S~~v~~algS~l~nkYaeG~pg~R-yy~G~~~iD~iE~la~~ra~~lF~~~~~~~~anVqp~SGs~An~av~~al-- 117 (470)
T d1rv3a_ 41 NFASRAVLEALGSCLNNKYSLGYPGQR-YYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTAL-- 117 (470)
T ss_dssp CCCCHHHHHHHTSGGGTCCCCEETTEE-SSSCCHHHHHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH--
T ss_pred CcCCHHHHHHhcchhcccccCCCCCcc-ccCCchhHHHHHHHHHHHHHHHhCCChhhccccccccCCccHHHHHHHHh--
Confidence 467788999988777766643 3332 3445443 455556778889999987542 1133347888776665443
Q ss_pred ccchhhHHHHHHhhhcCCCceEEEECCCCccchHH----------HHHHcCceEEEEecCC-CCCCCHHHHHHHHhhhcc
Q 038499 162 IAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL----------SWRQSLAEVVEIGLDD-DGLLDIEALRSKLELYKD 230 (609)
Q Consensus 162 ~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~----------~~~~~G~~vv~v~~~~-~g~ld~e~L~~al~~~~~ 230 (609)
++||| .|+..+..+.+.+. .+.....+.+..++++ ++.+|.+++++.+.+
T Consensus 118 --------------l~pgD--~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~v~~~~~~IDyd~l~~~a~~--- 178 (470)
T d1rv3a_ 118 --------------VEPHG--RIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARL--- 178 (470)
T ss_dssp --------------TCTTC--EEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHH---
T ss_pred --------------cCCCC--eEeeeccccCCcccccccccCCCcccccceeEeeEEEEecccCcccHHHHHHHHHh---
Confidence 48999 47775554443321 1112245788888886 589999999999986
Q ss_pred CCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEE
Q 038499 231 AKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILL 310 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~ 310 (609)
.+|++|++..-.++ ...|.+++.++|++.|+++++|.||-.|.+.-.+.+-...++|++++|.||.|.||.| |+++
T Consensus 179 -~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sPl~~aDvvt~tTHKtlrGPrg-GiI~ 254 (470)
T d1rv3a_ 179 -FHPKLIIAGTSCYS--RNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRA-GMIF 254 (470)
T ss_dssp -HCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCSC-EEEE
T ss_pred -hCcceEeechhhcc--ccCCHHHHHHHHhccCCeEEecchhhhhhccccccCChhheeeeeeeehhhhccCCcc-eEEE
Confidence 58999888654444 6789999999999999999999998765443332222224679999999999999997 9999
Q ss_pred EechhhccCCCCCCccCCCceEeecccccccccccccccccc---cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 038499 311 MTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE---SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETY 387 (609)
Q Consensus 311 ~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~---~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l 387 (609)
.+++. +...|.. |- .....+...+.... ..|.|....+++.+.++............++..++
T Consensus 255 ~~~~~---~~~~~~~-~~----------~~~~~~~~~i~~avFPg~qggph~~~IAa~Ava~~ea~~~~fk~Ya~qvv~N 320 (470)
T d1rv3a_ 255 YRRGV---RSVDPKT-GK----------EILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVAN 320 (470)
T ss_dssp EECSB---CC------------------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHH
T ss_pred Ecccc---ccccccc-cc----------hhHHHHHHHHhhhcCccccccchhhHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence 88875 1111110 00 00011111111111 12344444444444444321122356777888888
Q ss_pred HHHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChh
Q 038499 388 IERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPY 467 (609)
Q Consensus 388 ~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~ 467 (609)
++.+.+.|.+. |+++..... ....+...+.+ ..+++..+.+.| ++.||.+.--+. |.
T Consensus 321 Ak~La~~L~~~-G~~v~~ggT--dnHlvlvdl~~----------------~g~~g~~ae~~L-e~~gI~~Nkn~i---P~ 377 (470)
T d1rv3a_ 321 CRALSAALVEL-GYKIVTGGS--DNHLILVDLRS----------------KGTDGGRAEKVL-EACSIACNKNTC---PG 377 (470)
T ss_dssp HHHHHHHHHHT-TCEEGGGSC--SSSEEEEEGGG----------------GTCCHHHHHHHH-HHTTEECEEECC---SS
T ss_pred HHHHHHHHHhC-CceeccCCC--CCceEEEeecc----------------cCCcHHHHHHHH-HHcCcEECCCcC---CC
Confidence 88999999886 899886432 22333444433 125777777777 667998763221 21
Q ss_pred hhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhcc
Q 038499 468 GHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP----YYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 468 ~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~----~~~t~eeid~ll~al~~v~~~~~ 526 (609)
-.. ...+..|||..+ .-+.++|+.++.+.|.+++....
T Consensus 378 D~~---------------------~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~~~~ 419 (470)
T d1rv3a_ 378 DKS---------------------ALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTV 419 (470)
T ss_dssp CSC---------------------TTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCC---------------------CCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 100 013678999964 55689999999999998886543
|
| >d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Serine hydroxymethyltransferase species: Human (Homo sapiens), mitochondrial [TaxId: 9606]
Probab=99.73 E-value=6.6e-17 Score=167.96 Aligned_cols=357 Identities=16% Similarity=0.150 Sum_probs=209.9
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCC-CchhhHHH-HHHHHHHHHHHHHHhCCCCCCc--EEEeCChHHHHHHHHHHHhcc
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTC-DSYVGQHT-TNMVHEASNYIKKCLGGGQEDA--MIFCGSGTTAAIKRLQEVMGI 162 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~-~~~~~~~~-~~~~~e~r~~ia~~~g~~~~~~--vift~sGttaal~~l~~~l~~ 162 (609)
...++.|.+++...+...|+....+ .++.|... .++..-++++.+++||++.... =+-.-||+.+++..+...
T Consensus 37 N~~S~~v~~algS~l~nkYaeG~pg~Ryy~G~~~iD~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~al--- 113 (463)
T d2a7va1 37 NFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL--- 113 (463)
T ss_dssp CCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH---
T ss_pred CcCCHHHHHHhcchhcccccCCCCCccccCCchhHHHHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHH---
Confidence 4677888888887777666432221 23444433 3445557888999999986521 133348888766655443
Q ss_pred cchhhHHHHHHhhhcCCCceEEEECCCCccchHH--------HHHHcC--ceEEEEecCC-CCCCCHHHHHHHHhhhccC
Q 038499 163 AVPSILREKLIKCLRDEERWVVFVGPHEHHSNLL--------SWRQSL--AEVVEIGLDD-DGLLDIEALRSKLELYKDA 231 (609)
Q Consensus 163 ~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~--------~~~~~G--~~vv~v~~~~-~g~ld~e~L~~al~~~~~~ 231 (609)
++||| .|+.-+..+...+. .....| .++..+++++ ++.+|.+++++.+.+
T Consensus 114 -------------l~pgD--~Im~l~l~~GGHlshg~~~~~~~~~~~g~~~~~~~Y~~d~~~~~IDyd~~~~~a~~---- 174 (463)
T d2a7va1 114 -------------LQPHD--RIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARL---- 174 (463)
T ss_dssp -------------CCSCE--ECCC-------------------------------CCBCTTTCSBCHHHHHHHHHH----
T ss_pred -------------cCCCc--eEEeeccCcCcccccccccccccccceeeEeeeeeeeccCCCCcCcHHHHHHHHhh----
Confidence 48999 47766665544431 111123 3455566674 689999999999987
Q ss_pred CCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEE
Q 038499 232 KRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLM 311 (609)
Q Consensus 232 ~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~ 311 (609)
.+|++|++..-..+ ...|.+++.++|++.|+++++|.+|-+|.+.-...+-...++|++++|.||.|.||.| |+++.
T Consensus 175 ~kPklIi~G~S~y~--r~~d~~~~reIad~vga~l~~D~aH~aGLIA~g~~~sP~~~aDvvt~tTHKTlrGPrg-GiIl~ 251 (463)
T d2a7va1 175 FRPRLIIAGTSAYA--RLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARS-GLIFY 251 (463)
T ss_dssp HCCSEEEECCSSCC--SCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSCSC-EEEEE
T ss_pred cCCceEEecccccc--cccCHHHHHHHhhcccceEEechhhhhHHhhhhhhcChhhhhhhhhchhhhhhcCCCc-eEEEE
Confidence 58999888654444 6789999999999999999999998765443333222224679999999999999996 99998
Q ss_pred echhhccCCCCCCccCCCceEeecccccccccccccccccc---cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 038499 312 TKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE---SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYI 388 (609)
Q Consensus 312 ~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~---~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~ 388 (609)
+++.- . ..|. ++. .....+...+.... ..|.|....+++.+.+|........+...++..+++
T Consensus 252 ~~~~~--~-~~~~---~~~--------~~~~~~~~~i~~avFPg~qggph~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NA 317 (463)
T d2a7va1 252 RKGVK--A-VDPK---TGR--------EIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNA 317 (463)
T ss_dssp ECSEE--E-EETT---TEE--------EEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred ccccc--c-cccc---cCc--------cchhHHHHHhhhhcCcccchhhhhhhHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 88641 0 0000 000 00001111111111 123344444333444443222234567778888888
Q ss_pred HHHHHHhCCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhh
Q 038499 389 ERALERLLPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYG 468 (609)
Q Consensus 389 ~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~ 468 (609)
+.+.+.|.+. |++|+.... ....+.+.+.+ ..+++..+.+.| +..||.+.--. -|.-
T Consensus 318 k~La~~L~~~-G~~vv~ggT--dnHlvlvdl~~----------------~~~~G~~ae~~L-e~~gI~~Nkn~---iP~D 374 (463)
T d2a7va1 318 RAMADALLER-GYSLVSGGT--DNHLVLVDLRP----------------KGLDGARAERVL-ELVSITANKNT---CPGD 374 (463)
T ss_dssp HHHHHHHHHT-TCEEGGGSC--SSSEEEEECTT----------------TTCCHHHHHHHH-HHTTEECEEEC---CTTC
T ss_pred HHHHHHHHhC-CCeeecCCC--CCceeeeeccc----------------cCCCHHHHHHHH-HhccCccCCcc---CCCC
Confidence 8899888876 899986532 22334444433 125777888888 66799887321 1211
Q ss_pred hhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecC----CCCCHHHHHHHHHHHHHHHHhcc
Q 038499 469 HHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFP----YYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 469 ~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~----~~~t~eeid~ll~al~~v~~~~~ 526 (609)
. ....++.|||..+ .-+.++|+..+.+.|.+++..+.
T Consensus 375 ~---------------------~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~~~~ 415 (463)
T d2a7va1 375 R---------------------SAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGL 415 (463)
T ss_dssp C---------------------CSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred C---------------------CCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence 0 0013678999974 34578999999999999887544
|
| >d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Methionine gamma-lyase, MGL species: Trichomonas vaginalis, MGL2 [TaxId: 5722]
Probab=99.72 E-value=2e-16 Score=160.78 Aligned_cols=302 Identities=13% Similarity=0.085 Sum_probs=189.4
Q ss_pred HHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH----HHH
Q 038499 125 EASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS----WRQ 200 (609)
Q Consensus 125 e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~----~~~ 200 (609)
.+++.++++-|+.. .++| +||..| |...+..+ +++|| +|+++..-|...... ++.
T Consensus 2 aLE~~la~Leg~~~--a~~~-sSGMaA-i~~~l~~l---------------l~~Gd--~iv~~~~~Yg~t~~~~~~~l~~ 60 (331)
T d1pffa_ 2 ALEGKIAKLEHAEA--CAAT-ASGMGA-IAASVWTF---------------LKAGD--HLISDDCLYGCTHALFEHQLRK 60 (331)
T ss_dssp HHHHHHHHHHTCSE--EEEE-SSHHHH-HHHHHHHH---------------CCTTC--EEEEESCCCHHHHHHHHTHHHH
T ss_pred HHHHHHHHHhCCCe--EEEE-CCHHHH-HHHHHHHH---------------hCCCC--EEEEeCCCchHHHHHHHHHHHh
Confidence 36788999999852 4666 488874 55544443 48999 688888878766544 345
Q ss_pred cCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHH-HHhCCeEEEeccccCCcccc
Q 038499 201 SLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLL-HQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 201 ~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la-~~~g~~vivD~A~~~~~~~i 279 (609)
.|+++.+++.. |++.++++++ ++|+++++..++||+..+.|++++++++ |++|++++||.+.+.|+.
T Consensus 61 ~gi~~~~~d~~-----d~~~~~~~i~-----~~t~~i~~Es~~np~~~v~d~~~~~~~~a~~~~~~~vVDnT~atp~~-- 128 (331)
T d1pffa_ 61 FGVEVDFIDMA-----VPGNIEKHLK-----PNTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPIL-- 128 (331)
T ss_dssp TTCEEEEECTT-----STTHHHHTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHH--
T ss_pred cCeEEEEeccc-----chhhHhhhcc-----cccceeeeecccccccccccchhhhhhhhcccCceEEeecccccccc--
Confidence 79999998765 7888999998 7899999999999999999999999885 678999999999775533
Q ss_pred cCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCCh
Q 038499 280 DVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTP 357 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp 357 (609)
.+++. .|+|+++.|..|+++|-.. .|+++.+++........... ...+.+.
T Consensus 129 -~~pl~-~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~-------------------------~~~G~~l 181 (331)
T d1pffa_ 129 -TNPLD-LGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIK-------------------------DITGAII 181 (331)
T ss_dssp -CCGGG-GTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCC-------------------------CCCCCCC
T ss_pred -ccccc-cCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhh-------------------------hccCCCC
Confidence 22221 1789999999999998643 58888886652100000000 0001111
Q ss_pred hHHH--HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCce-EEeCCC--C-----------CCCcceEEEEecc
Q 038499 358 QVIQ--MIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNI-KILGNT--S-----------TKRQAILSFNIHS 421 (609)
Q Consensus 358 ~i~~--~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i-~v~~~~--~-----------~~r~~~~~f~~~~ 421 (609)
+... .+..++. -.....++..+++..+.+.|+++|.+ +|+-|. + ....+.++|.+..
T Consensus 182 ~p~~a~ll~rgl~-------Tl~~Rm~~~~~nA~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~ 254 (331)
T d1pffa_ 182 SPHDAWLITRGTL-------TLDMRVKRAAENAQKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDG 254 (331)
T ss_dssp CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS
T ss_pred CHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeecc
Confidence 1111 1111111 13444566777888888889888887 455442 1 1235677777754
Q ss_pred CCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEE
Q 038499 422 STINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWT 498 (609)
Q Consensus 422 ~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~i 498 (609)
.. ....+.+.| +.+++.+.-|+..+ .|.......+.++... ..|+.++.|
T Consensus 255 -~~----------------~~~~f~d~l-~lf~~~~SlG~~~SLi~~p~~~~h~~~~~e~~~---------~~Gi~~~li 307 (331)
T d1pffa_ 255 -LE----------------KAKKVLDNC-HVVSLAVSLGGPESLIQHPASMTHAGVPKEERE---------AAGLTDNLI 307 (331)
T ss_dssp -HH----------------HHHHHHHTC-SSSEECSSCCSSSCEEECHHHHTSTTSCHHHHH---------HTTCCTTEE
T ss_pred -HH----------------HHHHHHHhC-CcceecccCCCCceeEeCccccccccCCHHHHH---------hcCCCcCeE
Confidence 11 223344444 33555566565433 2333222334333221 146778999
Q ss_pred EEecCCCCCHHHHHHHHHHHHH
Q 038499 499 RISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 499 Rls~~~~~t~eeid~ll~al~~ 520 (609)
|||+|.-..++=++.+-++|+.
T Consensus 308 RlsvGlE~~~DLi~Dl~~AL~~ 329 (331)
T d1pffa_ 308 RLSVGCENVQDIIDDLKQALDL 329 (331)
T ss_dssp EEECCSSCHHHHHHHHHHHHHT
T ss_pred EEEeeeCCHHHHHHHHHHHHHH
Confidence 9999975554445555555543
|
| >d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine beta-lyase, CBL species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=5.6e-16 Score=160.60 Aligned_cols=310 Identities=12% Similarity=0.092 Sum_probs=195.8
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+++..+.....+++.++++-|+.. .++| +||..| +..++..+ +++|| .|+++..-|...
T Consensus 52 Y~R~~nPt~~~le~~la~LEg~~~--a~~~-~SGMaA-i~~~l~~l---------------~~~Gd--~iv~~~~~Yg~T 110 (391)
T d1cl1a_ 52 YGRRGTLTHFSLQQAMCELEGGAG--CVLF-PCGAAA-VANSILAF---------------IEQGD--HVLMTNTAYEPS 110 (391)
T ss_dssp CTTTCCHHHHHHHHHHHHHHTCSE--EEEE-SSHHHH-HHHHHHHH---------------CCTTC--EEEEETTSCHHH
T ss_pred eECCCChhHHHHHHHHHHHhCCcc--EEEe-ccccce-eeehhhcc---------------cCCCC--eEEEecccccch
Confidence 344445557788999999999852 4555 488774 55554444 47899 688888888877
Q ss_pred HHHHH----HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHh--CCeEEE
Q 038499 195 LLSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQY--GGFACF 268 (609)
Q Consensus 195 ~~~~~----~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~--g~~viv 268 (609)
...+. ..|+++..++.. |.++++++++ +++++|++..++||+..+.|+++|+++|+++ |++++|
T Consensus 111 ~~l~~~~l~~~Gi~~~~~d~~-----d~~~~~~~i~-----~~t~~i~~EtpsNP~l~v~Di~~i~~~a~~~~~g~~~vV 180 (391)
T d1cl1a_ 111 QDFCSKILSKLGVTTSWFDPL-----IGADIVKHLQ-----PNTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMI 180 (391)
T ss_dssp HHHHHHTGGGGTCEEEEECTT-----CGGGGGGTCC-----TTEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEE
T ss_pred hhhhhhcccccccccccccCc-----cccccccccc-----cccceeeecccCcccccccccHHHHHHHHhccCCcEEEE
Confidence 65554 368899888754 6788888887 6899999999999999999999999999875 999999
Q ss_pred eccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccccc
Q 038499 269 DFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLE 346 (609)
Q Consensus 269 D~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~ 346 (609)
|.+.+.|+..-.+. .|+|+++.|..|+++|-.. .|+++.+++... .+..
T Consensus 181 DnT~atP~~~~Pl~----~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~--~~~~----------------------- 231 (391)
T d1cl1a_ 181 DNTWAAGVLFKALD----FGIDVSIQAATKYLVGHSDAMIGTAVCNARCWE--QLRE----------------------- 231 (391)
T ss_dssp ECTTTTTTSSCGGG----GTCSEEEEETTTTTTCSSSCCCEEEEECTTTHH--HHHH-----------------------
T ss_pred eccccchhhhcccc----cccceEEeecchhccccccccccceeccccccc--cchh-----------------------
Confidence 99987765422222 2899999999999998643 577777666521 1100
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCC-------------CCCc
Q 038499 347 DIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTS-------------TKRQ 412 (609)
Q Consensus 347 ~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~-------------~~r~ 412 (609)
..+...++.+... +-+ .+....-+....++..+.+..+.+.|+++|.+. |+.|.- ....
T Consensus 232 --~~~~~G~~~~p~~---a~l--l~rgl~TL~lR~~~~~~nA~~vA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~g 304 (391)
T d1cl1a_ 232 --NAYLMGQMVDADT---AYI--TSRGLRTLGVRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSS 304 (391)
T ss_dssp --HHHHTTCCCCHHH---HHH--HHHHHTTHHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCC
T ss_pred --hhhcccccCCchh---hhh--hhccchhHHHHHHHHHHHHHHHHHHHHhcccccccccccccchhhHHHHhhccCCCC
Confidence 0111122222111 111 111223455566777888899999999999886 444421 1124
Q ss_pred ceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHh--hhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHHHHh
Q 038499 413 AILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLN--DLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRSAIQ 487 (609)
Q Consensus 413 ~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~--~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~~~~ 487 (609)
+.++|.+.. . .+.+.+.+.+. +.+.+.+.-|..-+ .|.......+. .
T Consensus 305 g~~sf~l~~-~----------------~~~e~~~~f~d~L~l~~~a~SlG~~~SLi~~~~~~~~~~~~-----------~ 356 (391)
T d1cl1a_ 305 GLFSFVLKK-K----------------LNNEELANYLDNFSLFSMAYSWGGYESLILANQPEHIAAIR-----------P 356 (391)
T ss_dssp SEEEEEESS-C----------------CCHHHHHHHHTTCSSCBCCSCCCSSSCEEEEECHHHHHHTS-----------T
T ss_pred cceeeeecC-C----------------CCHHHHHHHHHcCCcceEeeCCCCCccceeCCcccccccCC-----------c
Confidence 578888775 2 23455555553 23344444443211 01111110111 1
Q ss_pred hCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHH
Q 038499 488 KGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 488 ~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~ 523 (609)
+...|+.++.||||++.- +++.+++-|++.++
T Consensus 357 ~~~~gi~~~liRlSVGlE----d~eDLi~Dl~~AL~ 388 (391)
T d1cl1a_ 357 QGEIDFSGTLIRLHIGLE----DVDDLIADLDAGFA 388 (391)
T ss_dssp TCCCCCCSCEEEEECCSS----CHHHHHHHHHHHHH
T ss_pred hHhcCCCcCEEEEEeccC----CHHHHHHHHHHHHH
Confidence 123467789999999964 44555555544443
|
| >d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Low-specificity threonine aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=99.70 E-value=1e-16 Score=162.70 Aligned_cols=321 Identities=11% Similarity=0.002 Sum_probs=184.7
Q ss_pred CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchh
Q 038499 87 GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPS 166 (609)
Q Consensus 87 g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~ 166 (609)
.|. +.|++++.+.. .....|.. .....++++.+++++|.+ .+++++|||.+ ...++.++.
T Consensus 11 ~p~-p~v~~A~~~a~------~g~~~yg~----~p~~~~le~~lA~~~G~~---~~~~~~sGt~A-~~~al~a~~----- 70 (343)
T d1m6sa_ 11 KPT-EEMRKAMAQAE------VGDDVYGE----DPTINELERLAAETFGKE---AALFVPSGTMG-NQVSIMAHT----- 70 (343)
T ss_dssp CCC-HHHHHHHHTCC------CCCGGGTC----CHHHHHHHHHHHHHTTCS---EEEEESCHHHH-HHHHHHHHC-----
T ss_pred CCC-HHHHHHHHhhh------cCCcccCC----CHHHHHHHHHHHHHHCCC---eEEEeCCHHHH-HHHHHHHHh-----
Confidence 354 46888886532 22111211 234678899999999975 56777677775 444555543
Q ss_pred hHHHHHHhhhcCCCceEEEECCCCccchHH---HHHHcCceEEEEecCCCCCCCHHHHHHHHhhhcc-CCCce-EEEEec
Q 038499 167 ILREKLIKCLRDEERWVVFVGPHEHHSNLL---SWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKD-AKRPI-LGSFSA 241 (609)
Q Consensus 167 ~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~---~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~-~~~~~-lv~~s~ 241 (609)
++|| .+++.+..|.+... .+...+..++.++.+ .+..|++.+++.+..... ..++. ++....
T Consensus 71 ----------~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 137 (343)
T d1m6sa_ 71 ----------QRGD--EVILEADSHIFWYEVGAMAVLSGVMPHPVPGK-NGAMDPDDVRKAIRPRNIHFPRTSLIAIENT 137 (343)
T ss_dssp ----------CTTC--EEEEETTCHHHHSSTTHHHHHTCCEEEEECEE-TTEECHHHHHHHSCCSCTTSCCEEEEEEESS
T ss_pred ----------ccCC--ceeccccccceeeecccccccccceeeccccc-cCccCHHHHHHhhhhhhcccccccccccccc
Confidence 6777 57777777765542 333445555555433 456799999999874321 12444 455556
Q ss_pred ccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcccccCCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechhh
Q 038499 242 CSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVEIDVRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKALY 316 (609)
Q Consensus 242 ~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~ 316 (609)
++++.|.+.| +++|.++|++||+++++|+++..+......... .....+..+++.+|..+|.. .|+.+..++..
T Consensus 138 ~~~~~~~~~~~~~l~~i~~~~~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~ 216 (343)
T d1m6sa_ 138 HNRSGGRVVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV-GSVVVGDRDFI 216 (343)
T ss_dssp BTTTTSBCCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSS-CEEEEECHHHH
T ss_pred cccCCceecCHHHHHHHHHHHHhcCeEEEeccccccccccccccchhhhccccccccccccccccccc-cccccccHHHH
Confidence 6677777765 557788889999999999997653322111110 01134677777788777665 46666666652
Q ss_pred ccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHH-HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHh
Q 038499 317 QLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIR-AALAFWVKEYIGHEVIKKQEETYIERALERL 395 (609)
Q Consensus 317 ~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~-aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L 395 (609)
...... .....++........ +.............. ..+...++.+.+
T Consensus 217 --~~~~~~-------------------------~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 265 (343)
T d1m6sa_ 217 --ERARKA-------------------------RKMLGGGMRQAGVLAAAGIIALTKMVDRLKE----DHENARFLALKL 265 (343)
T ss_dssp --HHHHHH-------------------------HHHHTCCCSSTHHHHHHHHHHHHHSSTTHHH----HHHHHHHHHHHH
T ss_pred --hhhHhh-------------------------CcccccccchhHHHHHhhhhhhhhhHHHHHH----HHHHHHHhhhHH
Confidence 111000 000111111111111 111111111112222 223333444444
Q ss_pred CCCCceEEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCC
Q 038499 396 LPNQNIKILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLD 475 (609)
Q Consensus 396 ~~~p~i~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~ 475 (609)
..+.+.....+. ..+++.+.+.+ .. +....+.+.|.+ .||.+++.
T Consensus 266 ~~~~~~~~~~~~---~~~~v~~~~~~-~~---------------~~a~~l~~~L~~-~Gi~v~~~--------------- 310 (343)
T d1m6sa_ 266 KEIGYSVNPEDV---KTNMVILRTDN-LK---------------VNAHGFIEALRN-SGVLANAV--------------- 310 (343)
T ss_dssp HHHTCBCCGGGC---CSSEEEEECTT-SS---------------SCHHHHHHHHHH-HTEECEEE---------------
T ss_pred HHhccCccCCCC---CceEEEEEeCC-Cc---------------ccHHHHHHHHHH-CCCEEecC---------------
Confidence 444344333331 23444444433 21 467889999976 59998732
Q ss_pred hhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhc
Q 038499 476 EAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYG 525 (609)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~ 525 (609)
.++++||++++.+|+||||+++++|++++++.
T Consensus 311 ------------------~~~~iRi~~~~~~t~edid~~v~~l~~v~~~~ 342 (343)
T d1m6sa_ 311 ------------------SDTEIRLVTHKDVSRNDIEEALNIFEKLFRKF 342 (343)
T ss_dssp ------------------ETTEEEEECCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHh
Confidence 14789999999999999999999999998864
|
| >d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Escherichia coli [TaxId: 562]
Probab=99.69 E-value=4.5e-17 Score=171.01 Aligned_cols=212 Identities=19% Similarity=0.145 Sum_probs=138.9
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhC----C--CCCCcEEEeCChHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLG----G--GQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g----~--~~~~~vift~sGttaa 152 (609)
+|.|.....+.++.|.+++.+...+ ...|. |....+ ..++|+.+++++. . .++..+..++.|++.+
T Consensus 35 ~~~d~~g~~p~~~~V~~A~~~~~~~--~~~~~--Y~p~~G----~~~lR~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (396)
T d2q7wa1 35 VYKDETGKTPVLTSVKKAEQYLLEN--ETTKN--YLGIDG----IPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGA 106 (396)
T ss_dssp SCCCTTSCCCCCHHHHHHHHHHHHH--CCCCC--CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHH
T ss_pred CccCCCCCCCCCHHHHHHHHHHhhC--CCCCC--CCCCcC----CHHHHHHHHHHHHhhcCCcccccceeeeccchHHHH
Confidence 3667666677888888887665542 11221 222222 4456666666542 1 1222333333555555
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhcc
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKD 230 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~ 230 (609)
+......+. .+.+|| .|+++.+.|+.+...++..|++++.++... ++..+...+.+.+.+.
T Consensus 107 ~~l~~~~l~-------------~~~~gd--~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 169 (396)
T d2q7wa1 107 LRVAADFLA-------------KNTSVK--RVWVSNPSWPNHKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEA-- 169 (396)
T ss_dssp HHHHHHHHH-------------HHSCCC--EEEEEESCCTHHHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTC--
T ss_pred HHHHHHHHh-------------hcccce--EEEEecCCCccchHHHHHcCCeeEecccccccccccccchHHHHHHHh--
Confidence 544444332 146888 799999999999999999999999998754 3456777777766532
Q ss_pred CCCceEEEEecccCccccccCH---HHHHHHHHHhCCeEEEeccccCCccccc-----CCCC-CCCCccEEEEcCCCCCC
Q 038499 231 AKRPILGSFSACSNVTGIYSDT---RSIARLLHQYGGFACFDFAASGPYVEID-----VRSG-QTDGYDAIFLSTHKFLG 301 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~dl---~~I~~la~~~g~~vivD~A~~~~~~~id-----~~~~-~~~~~D~v~~S~hK~lg 301 (609)
.++++++++++|+||||.+.+. ++|+++|++|+++++.|+++..-...-+ .... ......+++.|++|.++
T Consensus 170 ~~~~~~i~~~~P~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~ 249 (396)
T d2q7wa1 170 QAGDVVLFHGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSKNFG 249 (396)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTT
T ss_pred ccCcEEEEecCCcCCcCeecCHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccccccccccc
Confidence 2578899999999999999874 5789999999999999999764321100 0000 00123566778888887
Q ss_pred CCC-CcEEEEEechh
Q 038499 302 GPG-SPGILLMTKAL 315 (609)
Q Consensus 302 gp~-g~G~L~~~~~~ 315 (609)
.|+ .+|++++....
T Consensus 250 ~~G~R~G~~~~~~~~ 264 (396)
T d2q7wa1 250 LYNERVGACTLVAAD 264 (396)
T ss_dssp CGGGCCEEEEEECSS
T ss_pred ccCCCccccccchhH
Confidence 553 49999998766
|
| >d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]
Probab=99.69 E-value=2.2e-16 Score=166.63 Aligned_cols=213 Identities=14% Similarity=0.063 Sum_probs=137.0
Q ss_pred EEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCC------CCCCcEEEeCChHHHH
Q 038499 79 TYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGG------GQEDAMIFCGSGTTAA 152 (609)
Q Consensus 79 vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~------~~~~~vift~sGttaa 152 (609)
+|.|.....+.++.|.++... +.......|. |....+ ..++|+.+++++.. .++..++.+++|+..+
T Consensus 38 ~~~d~~g~~~~~~~V~~A~~~-l~~~~~~~~~--Y~p~~G----~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (412)
T d1yaaa_ 38 AYRDDNGKPWVLPSVKAAEKL-IHNDSSYNHE--YLGITG----LPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGA 110 (412)
T ss_dssp CCBCTTSCBCCCHHHHHHHHH-HHTCTTCCCC--CCCTTC----CHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHH
T ss_pred CCcCCCCCCCCcHHHHHHHHH-HHhCcccCCC--CCCCCC----CHHHHHHHHHHHhcccCccccccceeEEecccchhH
Confidence 466666666777888877533 2211111111 222222 44566666665421 1221233332444444
Q ss_pred HHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhhhcc
Q 038499 153 IKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLELYKD 230 (609)
Q Consensus 153 l~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~~~~ 230 (609)
+..++..+. .+.+|| .|+++++.|+.+...++..|++++.++... ++.++.+.+.+.+...
T Consensus 111 ~~~~~~~~~-------------~~~~gd--~Vlip~P~~~~y~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 173 (412)
T d1yaaa_ 111 LHISAKFFS-------------KFFPDK--LVYLSKPTWANHMAIFENQGLKTATYPYWANETKSLDLNGFLNAIQKA-- 173 (412)
T ss_dssp HHHHHHHHH-------------HHCTTC--CEEEEESCCTTHHHHHHTTTCCEEEEECEETTTTEECHHHHHHHHHHS--
T ss_pred HHHHHHHHh-------------ccCCCC--EEecccccCchhHHHHHHcCCceecccccccccccccchhhhcccccC--
Confidence 444433322 147899 699999999999999999999999999743 4577888888888642
Q ss_pred CCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcccc----c------CCCCCCCCccEEEEcCC
Q 038499 231 AKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVEI----D------VRSGQTDGYDAIFLSTH 297 (609)
Q Consensus 231 ~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~i----d------~~~~~~~~~D~v~~S~h 297 (609)
..+++++++++++||||.+.+ +++|+++|++++++++.|+++..-.-.- . .........-+++.|++
T Consensus 174 ~~~~~~i~i~~P~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~S 253 (412)
T d1yaaa_ 174 PEGSIFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFA 253 (412)
T ss_dssp CTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECT
T ss_pred CCceEEEEecCCCCCccccCCHHHHHHHHhhhccCCEEEeecceeeecccCCcccchhhhhhhhhccccCCCeEEEEecC
Confidence 145779999999999999987 6679999999999999999976321110 0 00000112347788999
Q ss_pred CCCCCCC-CcEEEEEechh
Q 038499 298 KFLGGPG-SPGILLMTKAL 315 (609)
Q Consensus 298 K~lggp~-g~G~L~~~~~~ 315 (609)
|.++-|+ .+|+++++.+.
T Consensus 254 K~~~~~G~RiG~~~~~~~~ 272 (412)
T d1yaaa_ 254 KNAGMYGERVGCFHLALTK 272 (412)
T ss_dssp TTSCCGGGCEEEEEEECCS
T ss_pred CccccCcCceEEEEEchhh
Confidence 9987543 59999999877
|
| >d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tyrosine phenol-lyase species: Erwinia herbicola [TaxId: 549]
Probab=99.68 E-value=5.5e-16 Score=165.29 Aligned_cols=325 Identities=14% Similarity=0.090 Sum_probs=188.6
Q ss_pred HHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH
Q 038499 121 NMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ 200 (609)
Q Consensus 121 ~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~ 200 (609)
..+.++++.+++++|.+ .+++|+||+.+ ...++.++ .++|| +|+.... +.+....+..
T Consensus 75 pt~~~lE~~~a~l~G~e---~al~~~SGt~A-n~~a~~~l---------------~~~Gd--~Vi~~~~-f~~~~~~i~~ 132 (456)
T d1c7ga_ 75 ENFYHLEKTVKELFGFK---HIVPTHQGRGA-ENLLSQLA---------------IKPGQ--YVAGNMY-FTTTRFHQEK 132 (456)
T ss_dssp HHHHHHHHHHHHHHCCS---EEEEESSHHHH-HHHHHHHH---------------CCTTE--EEEESSC-CHHHHHHHHH
T ss_pred chHHHHHHHHHHHhCCC---eEEECCCHHHH-HHHHHHHh---------------cCCCC--eEecCcc-hHHHHHHHHH
Confidence 34667899999999996 56888888885 45555555 37888 6776554 4444445666
Q ss_pred cCceEEEEecC----------CCCCCCHHHHHHHHhhhccCCCceEEEEecccCccc-ccc---CHHHHHHHHHHhCCeE
Q 038499 201 SLAEVVEIGLD----------DDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTG-IYS---DTRSIARLLHQYGGFA 266 (609)
Q Consensus 201 ~G~~vv~v~~~----------~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG-~~~---dl~~I~~la~~~g~~v 266 (609)
.|+..+.+..+ ..+.+|+++|+++|+++.. .++.++++.+++|..| ... ++++|.++|++||+.+
T Consensus 133 ~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~I~~~~~-~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~ 211 (456)
T d1c7ga_ 133 NGATFVDIVRDEAHDASLNLPFKGDIDLNKLATLIKEKGA-ENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKI 211 (456)
T ss_dssp TTEEEEECBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCE
T ss_pred cCceeeeccccccccccccCCccccCCHHHHHHHhhhcCC-ccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEE
Confidence 78887765431 2578999999999986421 2456889999999865 443 5778899999999999
Q ss_pred EEeccccCCc-----------ccccCCCC---CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCC--ccCCCc
Q 038499 267 CFDFAASGPY-----------VEIDVRSG---QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPS--TCGGGT 330 (609)
Q Consensus 267 ivD~A~~~~~-----------~~id~~~~---~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~--~~ggg~ 330 (609)
++|+|+..+. ...++... ....+|++++|.||.+++|.| |+++.+++.. .++.+.. ..++.
T Consensus 212 ~~D~a~~~~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~G-G~i~~~~~~l-~~~~r~~~~~~~g~- 288 (456)
T d1c7ga_ 212 FYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNIG-GFLCMNDEEM-FSAAKELVVVYEGM- 288 (456)
T ss_dssp EEECTTHHHHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSC-EEEEESCHHH-HHHHHHHHHHHTCC-
T ss_pred EEEcchhhcchhhhcccccccCCCChhhhccccccccccEEEeccccccccce-eEEEcCCHHH-HHHHHHhccccCCC-
Confidence 9999975431 11111000 012469999999999998876 8888886541 1111100 00110
Q ss_pred eEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCC
Q 038499 331 VNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTK 410 (609)
Q Consensus 331 v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~ 410 (609)
...|..+.....++++.+ .+..+.+.+. +..+..+++.++|.+. ++.+..+..
T Consensus 289 ---------------------~~~g~~~~~~~~a~a~~l--~e~~~~~~l~-~r~~~~~~L~e~L~~~-g~~vv~p~g-- 341 (456)
T d1c7ga_ 289 ---------------------PSYGGLAGRDMEAMAIGL--REAMQYEYIE-HRVKQVRYLGDKLREA-GVPIVEPTG-- 341 (456)
T ss_dssp ---------------------TTTTTCCHHHHHHHHHHH--HHHTCHHHHH-HHHHHHHHHHHHHHHT-TCCBCSSCC--
T ss_pred ---------------------cccchhhHHHHHHHHHHH--HHhcCHHHHH-HHHHHHHHHHHHHHhc-cCCcccCCC--
Confidence 011222333332333322 2444444433 3445667888888776 565555421
Q ss_pred CcceEEEE----eccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHH
Q 038499 411 RQAILSFN----IHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAI 486 (609)
Q Consensus 411 r~~~~~f~----~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~ 486 (609)
.+..+. ..+ .. .........+...|....||....-.. +........+.
T Consensus 342 --~~~v~vda~~~~~-~i-----------~~~~~~~~~~~~~l~~~~GIr~~~~g~---~~~~~~~~~g~---------- 394 (456)
T d1c7ga_ 342 --GHAVFLDARRFCP-HL-----------TQDQFPAQSLAASIYMETGVRSMERGI---VSAGRSKETGE---------- 394 (456)
T ss_dssp --SSEEEEEHHHHCT-TS-----------CGGGCHHHHHHHHHHHHHSEECEEESH---HHHCBCSSSCC----------
T ss_pred --CcceeEechhhcc-CC-----------CcccccHHHHHHHHHHHhCeeecccCc---cccccCCcccC----------
Confidence 222222 111 00 000012344444444556886432111 10111000000
Q ss_pred hhCCCCCCCcEEEEecCC-CCCHHHHHHHHHHHHHHHHhcccc
Q 038499 487 QKGYVGVKPGWTRISFPY-YMSNEEFEFTLEALEFIAIYGQRF 528 (609)
Q Consensus 487 ~~~~~~~~~g~iRls~~~-~~t~eeid~ll~al~~v~~~~~~~ 528 (609)
........+|++++. ..|++++|+++++|+++.++...+
T Consensus 395 ---~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~~~~~i 434 (456)
T d1c7ga_ 395 ---NHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQHKEDI 434 (456)
T ss_dssp ---BCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHTTGGGC
T ss_pred ---ccCCccceEEEecCcccCCHHHHHHHHHHHHHHHhhhhhc
Confidence 000123579999973 349999999999999998776543
|
| >d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Alliinase species: Garlic (Allium sativum) [TaxId: 4682]
Probab=99.68 E-value=1.6e-16 Score=167.50 Aligned_cols=295 Identities=13% Similarity=0.062 Sum_probs=177.9
Q ss_pred HHHHHHHHHh---C-CCCCC-cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHH
Q 038499 125 EASNYIKKCL---G-GGQED-AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWR 199 (609)
Q Consensus 125 e~r~~ia~~~---g-~~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~ 199 (609)
++++.|++++ | +..++ .|+++ +|++++|+.++.+|.-.... ..+.||+ .|+++.+.|+.+....+
T Consensus 104 ~L~~~i~~lh~~~gna~t~~~~IvvG-~Gsteli~~~~~AL~~~~~~-------~~~~pg~--~Vv~~~P~y~~Y~~~~~ 173 (425)
T d2hoxa1 104 ELEKTIKELHEVVGNAAAKDRYIVFG-VGVTQLIHGLVISLSPNMTA-------TPDAPES--KVVAHAPFYPVFREQTK 173 (425)
T ss_dssp HHHHHHHHHHHHHTCBCCTTCEEEEE-SHHHHHHHHHHHHHSCCTTT-------CTTSCCE--EEEECSSCCHHHHHHHH
T ss_pred HHHHHHHHHHhhhCCCCCCCCEEEEC-CCHHHHHHHHHHHhcccccc-------ccCCCCC--EEEEecCccccHHHHHH
Confidence 4555555544 3 33333 57776 99999999999887310000 0035777 69999999999887777
Q ss_pred HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEeccccCCcccc
Q 038499 200 QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDFAASGPYVEI 279 (609)
Q Consensus 200 ~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~A~~~~~~~i 279 (609)
..+.+...+.. |.++++++++ ++++++++++||||||.+.. +-.+++.+|.|+++..++. .
T Consensus 174 ~~~~~~~~~~~------D~~~~~~~~~-----~~~~ii~l~sPnNPtG~l~~-------~v~~~~~~I~DEaY~~~~f-~ 234 (425)
T d2hoxa1 174 YFDKKGYVWAG------NAANYVNVSN-----PEQYIEMVTSPNNPEGLLRH-------AVIKGCKSIYDMVYYWPHY-T 234 (425)
T ss_dssp HSCBTTEEEEE------EGGGGTTCSC-----GGGEEEEEESSCTTTCCCCC-------CSSTTCEEEEECTTCSTTT-S
T ss_pred HcCCCCCccCC------CHHHHHhhCC-----CCceEEEEECCCCCCcchhh-------hhhhCCEEEEeccccCccc-c
Confidence 77877666554 5666666666 68999999999999999732 1235899999999865432 1
Q ss_pred cCCCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 280 DVRSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 280 d~~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
++... ..-++++.|++|.+|-|+ .+|+++++++.+ .+.+... ......+.+.
T Consensus 235 ~~~~~--~~~~Ivl~S~SK~fglaGlRiGw~i~~~~~i-~~~~~~~------------------------~~~~~~~vs~ 287 (425)
T d2hoxa1 235 PIKYK--ADEDILLFTMSKFTGHSGSRFGWALIKDESV-YNNLLNY------------------------MTKNTEGTPR 287 (425)
T ss_dssp CCCSC--BCCSEEEEEHHHHTSCGGGCCEEEEECCHHH-HHHHHHH------------------------HHHHTSSCCH
T ss_pred chhhh--cCCeEEEEeCHHhccCcchheeeEEeCCHHH-HHHHHHh------------------------hccCcccCCH
Confidence 12111 245899999999998553 499998886652 1111100 0111123333
Q ss_pred HHHHHH-HHHHHH---HHHh-----cCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCC----------CCCcceEEEEe
Q 038499 359 VIQMIR-AALAFW---VKEY-----IGHEVIKKQEETYIERALERLLPNQNIKILGNTS----------TKRQAILSFNI 419 (609)
Q Consensus 359 i~~~~~-aal~~~---~~~~-----~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~----------~~r~~~~~f~~ 419 (609)
..+... +++... .... .-.+..+++.++.++++.+.|.+.+.+.+..... .+..+.+.+..
T Consensus 288 ~~Q~aa~~aL~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~ 367 (425)
T d2hoxa1 288 ETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVK 367 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEE
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeee
Confidence 333221 111110 0011 1134445666677788888888876554432110 00111222222
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
.. . ....++.++| ++.||.+++|..|.. .++++|
T Consensus 368 ~~-~----------------~~~~~~~~lL-~e~gI~v~pGs~FG~----------------------------~~~yvR 401 (425)
T d2hoxa1 368 CE-W----------------EEDKDCYQTF-QNGRINTQNGVGFEA----------------------------SSRYVR 401 (425)
T ss_dssp EC-S----------------GGGCSHHHHH-HHTTEECEEGGGGTS----------------------------CTTEEE
T ss_pred CC-C----------------ChHHHHHHHH-HhCCEEEEechhcCC----------------------------CCCEEE
Confidence 22 1 0123445555 457999999876531 258999
Q ss_pred EecCCCCCHHHHHHHHHHHHHHHH
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIAI 523 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~~ 523 (609)
||+. .++|+++.+++.|+++++
T Consensus 402 isl~--~~~e~ld~~l~rL~~~v~ 423 (425)
T d2hoxa1 402 LSLI--KTQDDFDQLMYYLKDMVK 423 (425)
T ss_dssp EECS--SCHHHHHHHHHHHHHHHT
T ss_pred EEec--CCHHHHHHHHHHHHHHHh
Confidence 9986 588889999999999875
|
| >d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aspartate aminotransferase, AAT species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]
Probab=99.68 E-value=2.3e-16 Score=166.46 Aligned_cols=239 Identities=14% Similarity=0.025 Sum_probs=146.9
Q ss_pred HHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHH
Q 038499 51 SEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYI 130 (609)
Q Consensus 51 ~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~i 130 (609)
.-...+++|+.- . ...|+---| +|.|..+..+.++.|.++........ ...|. |....+ ..++|+.+
T Consensus 17 i~~l~~~~~~d~-~-~~~Inl~iG----~~~d~~g~~~~~~~V~~a~~~~~~~~-~~~~~--Y~p~~G----~p~lreai 83 (412)
T d1ajsa_ 17 VFKLIADFREDP-D-PRKVNLGVG----AYRTDDCQPWVLPVVRKVEQRIANNS-SLNHE--YLPILG----LAEFRTCA 83 (412)
T ss_dssp HHHHHHHHHTCC-C-TTCEECCSC----CCCCTTSCCCCCHHHHHHHHHHHTCT-TCCCC--CCCTTC----CHHHHHHH
T ss_pred HHHHHHHHhcCC-C-CCcEEeeCC----CCcCCCCCCCCcHHHHHHHHHHHhCC-CcCCC--CCCCCC----CHHHHHHH
Confidence 455667777542 1 122444444 47777666777788887754433211 11111 222222 45566666
Q ss_pred HHHhCC------CCCC-cEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCc
Q 038499 131 KKCLGG------GQED-AMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLA 203 (609)
Q Consensus 131 a~~~g~------~~~~-~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~ 203 (609)
++++.. ..+. .++.+ .|.+.++......+.... ...++||| .|+++++.|+.+...++..|+
T Consensus 84 a~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~--------~~~~~pGd--~Vlv~~P~y~~y~~~~~~~G~ 152 (412)
T d1ajsa_ 84 SRLALGDDSPALQEKRVGGVQS-LGGTGALRIGAEFLARWY--------NGTNNKDT--PVYVSSPTWENHNGVFTTAGF 152 (412)
T ss_dssp HHHHHCTTCHHHHTTCEEEEEE-EHHHHHHHHHHHHHHHHS--------SSSSCCCS--CEEEEESCCTHHHHHHHHTTC
T ss_pred HHHHhccCCcccccccceeecc-cchhhHHHHHHHHHHHHh--------hhcCCCCC--EEEEeCCcchhhHHHHHHcCC
Confidence 666522 1221 23344 455444444433332110 01258999 699999999999999999999
Q ss_pred eEEEEec---CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcc
Q 038499 204 EVVEIGL---DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYV 277 (609)
Q Consensus 204 ~vv~v~~---~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~ 277 (609)
+++.++. +..+.+|.+++++.+... .++++++++++|+||||.+.+ +++|+++|++||++++.|+++..-..
T Consensus 153 ~~v~~~~~~~~~~~~~d~~~~~~~~~~~--~~~~~~il~~~P~NPTG~v~s~e~~~~i~~la~~~~~~ii~De~Y~~l~~ 230 (412)
T d1ajsa_ 153 KDIRSYRYWDTEKRGLDLQGFLSDLENA--PEFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFAS 230 (412)
T ss_dssp SCEEEEECEETTTTEECHHHHHHHHHHS--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTT
T ss_pred eEEEeecccccccccccHHHHHHHHHhc--cCCcEEEEecCCCCCcCCCCCHHHHHHHHHHHhhCCEEEEecHhhhhhhc
Confidence 8665543 224467888887776531 257889999999999999987 66799999999999999999764211
Q ss_pred -ccc--C----CCCCCCCccEEEEcCCCCCCCCC-CcEEEEEechh
Q 038499 278 -EID--V----RSGQTDGYDAIFLSTHKFLGGPG-SPGILLMTKAL 315 (609)
Q Consensus 278 -~id--~----~~~~~~~~D~v~~S~hK~lggp~-g~G~L~~~~~~ 315 (609)
..+ . .........+++.|++|.++.++ ++|++++....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~ 276 (412)
T d1ajsa_ 231 GNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNERVGNLTVVAKE 276 (412)
T ss_dssp SCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGGCEEEEEEECSS
T ss_pred CCcccchhhhhhhhhhcccccccccccccccCCCCCccccccchhH
Confidence 100 0 00001134577778888887664 59999998765
|
| >d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Cystathionine synthase-like domain: Cystathionine gamma-lyase (CYS3) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.68 E-value=9.8e-16 Score=158.69 Aligned_cols=312 Identities=14% Similarity=0.091 Sum_probs=190.5
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
+++......+.+++.|+++-|+.. .++|. ||.. |+..++.. +.+|| .|+++...|...
T Consensus 49 YsR~gnPT~~~lE~~la~LE~~~~--a~~~s-SGma-Ai~~~l~~----------------l~~gd--~iv~~~~~yg~t 106 (393)
T d1n8pa_ 49 YSRSQNPNRENLERAVAALENAQY--GLAFS-SGSA-TTATILQS----------------LPQGS--HAVSIGDVYGGT 106 (393)
T ss_dssp BTTTCCHHHHHHHHHHHHHTTCSE--EEEES-CHHH-HHHHHHHT----------------SCSSC--EEEEESSCCHHH
T ss_pred eeCCCChHHHHHHHHHHHHhCCce--EEEec-Cchh-HHHhhhhc----------------ccCCC--eeeeeeeecccc
Confidence 333334556778999999998752 46664 8854 66655433 46888 577777777766
Q ss_pred HHHHH----HcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHH----HhCCeE
Q 038499 195 LLSWR----QSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLH----QYGGFA 266 (609)
Q Consensus 195 ~~~~~----~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~----~~g~~v 266 (609)
...+. ..|.++..++. +.++++++++ +++++|++..++||+..+.|+++|++++| ++|+++
T Consensus 107 ~~~~~~~l~~~gi~~~~~~~------~~~~~~~~i~-----~~t~lv~~EspsNP~l~v~Di~~ia~~a~~~~~~~g~~l 175 (393)
T d1n8pa_ 107 HRYFTKVANAHGVETSFTND------LLNDLPQLIK-----ENTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVIL 175 (393)
T ss_dssp HHHHHHTSTTTCSCCEEESS------HHHHHHHHSC-----SSEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEE
T ss_pred hhhhhhhhhcccceeEEeec------chHHHHHHhh-----hhcceeEecCcchhhhhccchhhhhhhhhhhcccCCceE
Confidence 55544 35788877752 4678999888 79999999999999999999999999999 578999
Q ss_pred EEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCCCC--cEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 267 CFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGPGS--PGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 267 ivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp~g--~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
+||.+.+.|+..-.+. .|+|+++.|..|+++|-.. .|+++.++... ...+..
T Consensus 176 vVDnT~atP~~~~Pl~----~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~-~~~l~~--------------------- 229 (393)
T d1n8pa_ 176 VVDNTFLSPYISNPLN----FGADIVVHSATKYINGHSDVVLGVLATNNKPL-YERLQF--------------------- 229 (393)
T ss_dssp EEECTTTHHHHCCGGG----GTCSEEEEETTTTTTCSSCCCCEEEEESCHHH-HHHHHH---------------------
T ss_pred EEecCccCcccCCchh----hCCCEEEEccccccCCCCccccceeeecchhH-HHHHHH---------------------
Confidence 9999977654322221 2899999999999998643 57777665431 111100
Q ss_pred cccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC-CceE-EeCCCC--C-----------
Q 038499 345 LEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN-QNIK-ILGNTS--T----------- 409 (609)
Q Consensus 345 ~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~-p~i~-v~~~~~--~----------- 409 (609)
..+..+++.+.... -+.+....-+....++..+.+..+.+.|+.. |.++ |+-|.- .
T Consensus 230 ----~~~~~G~~~~p~~a-----~ll~rgl~Tl~lR~~~~~~nA~~lA~~L~~~~~~V~~V~yP~l~~~~~~~~a~~~~~ 300 (393)
T d1n8pa_ 230 ----LQNAIGAIPSPFDA-----WLTHRGLKTLHLRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHR 300 (393)
T ss_dssp ----HHHHHCCCCCHHHH-----HHHHHHHTTHHHHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSG
T ss_pred ----HHhhcCCCCChHHH-----HHHHhCCcchhhHHHHHHHHHHHHHHHHHhccCcEEEEecccccccccchhhhhccc
Confidence 01111222222111 0111122345556677778888999999764 6554 443321 0
Q ss_pred --CCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccC---ChhhhhhcCCChhHHHHHHH
Q 038499 410 --KRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACA---GPYGHHLLDLDEAQSYQIRS 484 (609)
Q Consensus 410 --~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca---~p~~~~ll~i~~~~~~~~~~ 484 (609)
...+.++|.+.+ +. -....+++.| +.+.+.+.-|...+ .|.......+.++.
T Consensus 301 ~~~~G~~~sf~l~~-~~---------------~~~~~f~~~l-~l~~~~~SlGg~~SLi~~p~~~~h~~~~~~~------ 357 (393)
T d1n8pa_ 301 DALGGGMISFRIKG-GA---------------EAASKFASST-RLFTLAESLGGIESLLEVPAVMTHGGIPKEA------ 357 (393)
T ss_dssp GGCCCSEEEEEESS-CH---------------HHHHHHHHHC-SSSEECSCCCCSSCEEECTTTTTSCSSCTTT------
T ss_pred cCCCCceEEEEEeC-CH---------------HHHHHHHHhC-CcceecccCCCcCceEeCchhhccccCCHHH------
Confidence 124588898875 21 0123444555 44555555554322 23221111222111
Q ss_pred HHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHH
Q 038499 485 AIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEF 520 (609)
Q Consensus 485 ~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~ 520 (609)
....|+.++.||||++.-..++=++.+-++|+.
T Consensus 358 ---r~~~gi~~~liRlSvGlE~~~DLi~Dl~~AL~~ 390 (393)
T d1n8pa_ 358 ---REASGVFDDLVRISVGIEDTDDLLEDIKQALKQ 390 (393)
T ss_dssp ---TTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHH
T ss_pred ---HHhcCCCcCEEEEEeccCCHHHHHHHHHHHHHH
Confidence 012466789999999975544445555555544
|
| >d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Paracoccus denitrificans [TaxId: 266]
Probab=99.66 E-value=1.6e-16 Score=166.59 Aligned_cols=236 Identities=17% Similarity=0.057 Sum_probs=142.1
Q ss_pred HHHHHHHHHhhccCCCccccCCCCCCceEEecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHH
Q 038499 51 SEKKLTWLQSQIIGKNAEFDSPFGKRRLTYADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYI 130 (609)
Q Consensus 51 ~~~~~~~~r~~~~g~~~~~~~p~g~~~~vyld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~i 130 (609)
.-...+.+++.- ....|+---| +|.|.....+.++.|.+++.+.+..- ..|. |....+..++++.+.+++
T Consensus 13 i~~l~~~~~~d~--~~~~InL~iG----~~~d~~g~~~~~~~V~~A~~~~~~~~--~~~~--Y~p~~G~~~lr~aia~~~ 82 (394)
T d2ay1a_ 13 ILALMGEFRADP--RQGKIDLGVG----VYKDATGHTPIMRAVHAAEQRMLETE--TTKT--YAGLSGEPEFQKAMGELI 82 (394)
T ss_dssp HHHHHHHHHHCC--CTTCEECCCC----SCCCTTSCCCCCHHHHHHHHHHHHHC--CCCC--CCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC--CCCCEEccCC----CccCCCCCCCCCHHHHHHHHHHhhCC--CCCC--CCCCCCCHHHHHHHHHHH
Confidence 344556665441 1122443333 36666666778888998887655421 1221 222223334444443333
Q ss_pred HHHhCCC-CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEe
Q 038499 131 KKCLGGG-QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIG 209 (609)
Q Consensus 131 a~~~g~~-~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~ 209 (609)
.+.-+.. ..+.++.+++|...++...+..+ +.+|| .|+++++.++.+...++..|++++.++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~gd--~V~~p~p~~~~y~~~~~~~g~~~v~~~ 145 (394)
T d2ay1a_ 83 LGDGLKSETTATLATVGGTGALRQALELARM---------------ANPDL--RVFVSDPTWPNHVSIMNFMGLPVQTYR 145 (394)
T ss_dssp HGGGCCGGGEEEEEEEHHHHHHHHHHHHHHH---------------HCTTC--CEEEEESCCHHHHHHHHHHTCCEEEEE
T ss_pred hccccccccccceeccCchHHHHHHHHHhhh---------------cCCce--EEEEecccccchHHHHHHcCCEEEEec
Confidence 3323332 22234444222222333333322 36888 699999999999999999999999998
Q ss_pred cCC--CCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcccc-c---
Q 038499 210 LDD--DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVEI-D--- 280 (609)
Q Consensus 210 ~~~--~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~i-d--- 280 (609)
... .+..+.+++++.+... .++++++++++++||||.+.+ +++|+++|++|+++++.|+++..-.-.. .
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~--~~~~~i~~~~~p~NPTG~~~s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~ 223 (394)
T d2ay1a_ 146 YFDAETRGVDFEGMKADLAAA--KKGDMVLLHGCCHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAA 223 (394)
T ss_dssp CEETTTTEECHHHHHHHHHTC--CTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHH
T ss_pred ccchhcccccchhHHHHHhhc--ccCcEEEEeCCCCCCCCCCCCHHHHHHHHHHhhcceEEEEEeccchhhcccccccch
Confidence 753 4456777777666531 146789999999999999988 5679999999999999999976431110 0
Q ss_pred CC--CCCCCCccEEEEcCCCCCCCC-CCcEEEEEechh
Q 038499 281 VR--SGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKAL 315 (609)
Q Consensus 281 ~~--~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~ 315 (609)
.. .......-+++.|++|.++.+ .++|++++....
T Consensus 224 ~~~~~~~~~~~~~~~~s~sk~~~~~G~R~G~~~~~~~~ 261 (394)
T d2ay1a_ 224 GTRLIASRIPEVLIAASCSKNFGIYRERTGCLLALCAD 261 (394)
T ss_dssp HHHHHHHHCSSEEEEEECTTTTTCGGGCEEEEEEECSS
T ss_pred hhhhhhhhcccccccccccccccCCcccccchhhchhH
Confidence 00 000011235556778887654 348999988765
|
| >d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: AAT-like domain: Aromatic aminoacid aminotransferase, AroAT species: Escherichia coli [TaxId: 562]
Probab=99.65 E-value=5.8e-17 Score=170.24 Aligned_cols=208 Identities=15% Similarity=0.047 Sum_probs=138.7
Q ss_pred EecCCCCCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC------CCCcEEEeCChHHH--
Q 038499 80 YADHTASGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG------QEDAMIFCGSGTTA-- 151 (609)
Q Consensus 80 yld~~a~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~------~~~~vift~sGtta-- 151 (609)
|.|.....|.++.|.++...... ++.... ++.......++|+.+++++... ++ .|+.+ .|+++
T Consensus 36 ~~d~~g~~p~~~~V~~A~~~l~~----~~~~~~---~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~-~i~~~-~~~~~~~ 106 (397)
T d3tata_ 36 YYNEDGIIPQLQAVAEAEARLNA----QPHGAS---LYLPMEGLNCYRHAIAPLLFGADHPVLKQQ-RVATI-QTLGGSG 106 (397)
T ss_dssp CCCTTSSCCCCHHHHHHHHHHTT----SCCSSB---CCCCTTCCHHHHHHHHHHHTCSSCHHHHTT-CEEEC-CBSHHHH
T ss_pred CcCCCCCCCCcHHHHHHHHHHHh----CcccCC---CCCCcccCHHHHHHHHHHHhhccCCcCCcC-cEEEe-cCchhHH
Confidence 56666666777888888654322 111110 1112223567788888876532 33 56555 33332
Q ss_pred --HHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcCceEEEEecCC--CCCCCHHHHHHHHhh
Q 038499 152 --AIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDD--DGLLDIEALRSKLEL 227 (609)
Q Consensus 152 --al~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~--~g~ld~e~L~~al~~ 227 (609)
++..++..+ +.||| .|+++.+.|+.+...++..|++++.++++. .+.+|.+++.+.+..
T Consensus 107 ~~~l~~~~~~~---------------~~pgd--~Vlv~~P~y~~y~~~~~~~G~~~~~v~~~~~~~~~~~~~~~~~~~~~ 169 (397)
T d3tata_ 107 ALKVGADFLKR---------------YFPES--GVWVSDPTWENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKT 169 (397)
T ss_dssp HHHHHHHHHHH---------------HCSSC--CCEECSSCCTTHHHHHHTTTCCCEECCCCCTTTSSCCHHHHHHHHTT
T ss_pred HHHHHHHHhhh---------------cCCCC--cceecccCccccHHHHHHcCCEEEEEecchhhccccchHHHHHHhhh
Confidence 233333322 47899 699999999999999999999999999865 346788888887763
Q ss_pred hccCCCceEEEEecccCccccccC---HHHHHHHHHHhCCeEEEeccccCCcccc-----cCCC-CCCCCccEEEEcCCC
Q 038499 228 YKDAKRPILGSFSACSNVTGIYSD---TRSIARLLHQYGGFACFDFAASGPYVEI-----DVRS-GQTDGYDAIFLSTHK 298 (609)
Q Consensus 228 ~~~~~~~~lv~~s~~sn~TG~~~d---l~~I~~la~~~g~~vivD~A~~~~~~~i-----d~~~-~~~~~~D~v~~S~hK 298 (609)
. .++++++++++++||||.+.+ +++|+++|++|+++++.|+++..-.-.. .... ......-+++.|++|
T Consensus 170 ~--~~~~~~~~~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK 247 (397)
T d3tata_ 170 L--PARSIVLLHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSK 247 (397)
T ss_dssp C--CSSCCCEECSSSCSSSCCCCCHHHHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHH
T ss_pred c--ccccEEEEecCCCCCCCeeCCHHHHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcc
Confidence 2 256789999999999999987 4578999999999999999976432110 0000 000122467779999
Q ss_pred CCCCCC-CcEEEEEechh
Q 038499 299 FLGGPG-SPGILLMTKAL 315 (609)
Q Consensus 299 ~lggp~-g~G~L~~~~~~ 315 (609)
.++-|+ .+|++++....
T Consensus 248 ~~~~~G~RiG~~~~~~~~ 265 (397)
T d3tata_ 248 IFSLYGERVGGLSVMCED 265 (397)
T ss_dssp HHTBTTTCCBCCEEECSS
T ss_pred cccccCccccccccchhH
Confidence 887543 48999988766
|
| >d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase (decarboxylating) subunit 1 species: Thermus thermophilus [TaxId: 274]
Probab=99.65 E-value=2.3e-14 Score=149.93 Aligned_cols=321 Identities=16% Similarity=0.075 Sum_probs=203.7
Q ss_pred hhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch
Q 038499 115 VGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN 194 (609)
Q Consensus 115 ~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~ 194 (609)
...+.-+.+-+..++|+++.|.+.. ..-. ..|+++....++.+.. ....+ .++++...|+++
T Consensus 102 ~sQG~Lq~l~e~q~~l~eltGmd~~-n~s~-~~ga~a~~~~~~~~~~--------------~~~~~--~~~v~~~~~p~~ 163 (437)
T d1wyua1 102 VSQGVLQATFEYQTMIAELAGLEIA-NASM-YDGATALAEGVLLALR--------------ETGRM--GVLVSQGVHPEY 163 (437)
T ss_dssp GCHHHHHHHHHHHHHHHHHHTSSEE-CSCB-SSHHHHHHHHHHHHHH--------------HHTCC--EEEEETTSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcc-ccCc-hHHHHHHHHHHHHHHh--------------hhccc--ccccccccChHH
Confidence 4566778899999999999998633 2222 2688876666654432 12223 588899999887
Q ss_pred HHH----HHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccCHHHHHHHHHHhCCeEEEec
Q 038499 195 LLS----WRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSDTRSIARLLHQYGGFACFDF 270 (609)
Q Consensus 195 ~~~----~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~dl~~I~~la~~~g~~vivD~ 270 (609)
... +...|.+++.++.++.+..+ ++ +. +++..+.+.+| |..|.+.|+++|++++|+.|+++++|+
T Consensus 164 ~~v~~t~a~~~g~~vv~v~~~~~~~~~-~~----~~-----~~~Aavmi~~P-nt~G~~ed~~~i~~~~h~~G~l~~~~a 232 (437)
T d1wyua1 164 RAVLRAYLEAVGAKLLTLPLEGGRTPL-PE----VG-----EEVGAVVVQNP-NFLGALEDLGPFAEAAHGAGALFVAVA 232 (437)
T ss_dssp HHHHHHHHHHTTCEEEEECCBTTBCCC-CC----CC-----TTEEEEEEESS-CTTSBCCCHHHHHHHHHHTTCEEEEEC
T ss_pred hhhhhhhcccceeeEEeeecccccchh-hh----hc-----cceeEEEEccc-cccccccchHHHHHHhhhccceEEeee
Confidence 644 34579999999987644322 21 33 57888889888 456999999999999999999888876
Q ss_pred cccCCcccccCCCCCCCCccEEEEcCCCCC------CCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccc
Q 038499 271 AASGPYVEIDVRSGQTDGYDAIFLSTHKFL------GGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLY 344 (609)
Q Consensus 271 A~~~~~~~id~~~~~~~~~D~v~~S~hK~l------ggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~ 344 (609)
....-.. +.+....|+|+++.+ ||-| |||+ .|++.+++++ .+.++....| .+++...........+
T Consensus 233 d~~al~~---l~~Pg~~GaDi~~g~-~q~fg~p~g~GGP~-~G~~a~~~~l--~r~lPgrivg-~s~d~~G~~~~~l~lq 304 (437)
T d1wyua1 233 DPLSLGV---LKPPGAYGADIAVGD-GQSLGLPMGFGGPH-FGFLATKKAF--VRQLPGRLVS-ETVDVEGRRGFILTLQ 304 (437)
T ss_dssp CTTGGGT---BCCHHHHTCSEEEEE-CTTTTCCCGGGCSC-CEEEEECGGG--GGGCCSCCEE-EEEBTTSCEEEEECCG
T ss_pred chhhhhc---cccccccccceEeec-cceeccccCCCcCc-cccccccchh--hccccccccc-cccccCCcccceeecc
Confidence 5221111 111111288999988 5444 4444 6999999998 4555444433 1111000000000111
Q ss_pred cccccccccCC-----ChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcceEEEEe
Q 038499 345 LEDIEERESGG-----TPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQAILSFNI 419 (609)
Q Consensus 345 ~~~~~~r~~~g-----tp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~~~~f~~ 419 (609)
......|.+.+ |...+.+++++.-+......|++++.++...+++|+.++|.++++++++.+. +..- .|.+
T Consensus 305 treqhIrRekatsnict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~g~~~~~~~--~~f~--ef~v 380 (437)
T d1wyua1 305 AREQYIRRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPK--PFFN--EFAL 380 (437)
T ss_dssp GGSHHHHGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCS--SBCS--EEEE
T ss_pred cccccccccccccchhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcCCeeccCCC--Ceee--EEEE
Confidence 11111122223 3333444444443333456789999999999999999999999999987552 1222 2333
Q ss_pred ccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEE
Q 038499 420 HSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTR 499 (609)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iR 499 (609)
.. + .+..++.+.|.| +||.... ++.... .++.+.
T Consensus 381 ~~-~----------------~~~~~i~k~L~d-~G~~~~~------~~~~~~----------------------~~~~ll 414 (437)
T d1wyua1 381 AL-P----------------KDPEAVRRALAE-RGFHGAT------PVPREY----------------------GENLAL 414 (437)
T ss_dssp EC-S----------------SCHHHHHHHHHH-TTCCCCE------ECCTTS----------------------CSSEEE
T ss_pred EC-C----------------CCHHHHHHHHHh-CCCCCCc------ccccCC----------------------CCCeEE
Confidence 32 1 367899999977 5885321 111110 247899
Q ss_pred EecCCCCCHHHHHHHHHHHHHHH
Q 038499 500 ISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 500 ls~~~~~t~eeid~ll~al~~v~ 522 (609)
+++....|++|+|+++++|++++
T Consensus 415 i~~TE~~tkeeiD~~v~al~eil 437 (437)
T d1wyua1 415 FAATELHEEEDLLALREALKEVL 437 (437)
T ss_dssp EECCTTCCHHHHHHHHHHHHHHC
T ss_pred EecCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999873
|
| >d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Acetylornithine/acetyl-lysine aminotransferase ArgD species: Thermus thermophilus [TaxId: 274]
Probab=99.63 E-value=1.2e-13 Score=143.80 Aligned_cols=327 Identities=18% Similarity=0.227 Sum_probs=200.5
Q ss_pred CCCccccCCCCCCceEEecCCC------CCCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTA------SGRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a------~g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+++.++.+..|++ |+|..+ .|-..+.|.+++.+++......+... ..+...++.+.+.+.....
T Consensus 26 a~G~~l~d~dG~~---ylD~~~g~~~~~lGh~hp~v~~a~~~~~~~~~~~~~~~-------~~~~~~~la~~l~~~~~~~ 95 (387)
T d1vefa1 26 GQGARVWDAEGNE---YIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMPQTL-------PTPMRGEFYRTLTAILPPE 95 (387)
T ss_dssp EEBTEEEETTSCE---EEESSHHHHTCTTCBTCHHHHHHHHHHHHHCCCCCTTS-------CCHHHHHHHHHHHHTSCTT
T ss_pred eEcCEEEECCCCE---EEEcchhHHhhhhcCCcHHHHHHHHHHHHhhccccccc-------CCchHHHHHHHhhhhcccc
Confidence 4456666667753 888765 45667899999998887543322211 1223344444555544443
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccch-HHHHHHcC------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSN-LLSWRQSL------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~-~~~~~~~G------------~~ 204 (609)
.+ .+.|+.||+++.-.++-.+.. .. +.+ .|+.-...||.. ..++...| ..
T Consensus 96 ~~-~v~f~~sGseA~e~Aik~Ar~--------------~t-~r~-~ii~~~~~yHG~t~~~~~~s~~~~~~~~~~p~~~~ 158 (387)
T d1vefa1 96 LN-RVFPVNSGTEANEAALKFARA--------------HT-GRK-KFVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEP 158 (387)
T ss_dssp EE-EEEEESSHHHHHHHHHHHHHH--------------HH-SCC-EEEEETTCCCCSSHHHHHTCCCHHHHGGGCSCSSC
T ss_pred ce-eeccccCchHHHHHHHHHHHh--------------hc-ccc-eecccccCCCCCccceEeccCCccccCCCCCCCCC
Confidence 33 789998888874333322221 11 222 455555555543 33332221 24
Q ss_pred EEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCC-ccc-
Q 038499 205 VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP-YVE- 278 (609)
Q Consensus 205 vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~-~~~- 278 (609)
+..+|.+ |+++|++.+. +++..|++..+....|...+ +++|.++|++||+++|+|+++++. -..
T Consensus 159 ~~~~p~~-----d~~~l~~~~~-----~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~ 228 (387)
T d1vefa1 159 VEFIPYN-----DVEALKRAVD-----EETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK 228 (387)
T ss_dssp EEEECTT-----CHHHHHHHCC-----TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSS
T ss_pred ceEeCCC-----CHHHHHHhcC-----CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHHHcCceEEecccccccCccCC
Confidence 5566654 7899999887 57778888888888898877 889999999999999999998642 221
Q ss_pred ------ccCCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccc
Q 038499 279 ------IDVRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERE 352 (609)
Q Consensus 279 ------id~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~ 352 (609)
.++ .+|+++++ |.++|...++.++.+++. .....+...|+..
T Consensus 229 ~~~~~~~~v------~PDi~~~g--K~l~gG~~~~~~~~~~~~--~~~~~~~~~g~T~---------------------- 276 (387)
T d1vefa1 229 RFAFEHFGI------VPDILTLA--KALGGGVPLGVAVMREEV--ARSMPKGGHGTTF---------------------- 276 (387)
T ss_dssp SSTHHHHTC------CCSEEEEC--GGGGTTSSCEEEEEEHHH--HHTSCTTSSCCSS----------------------
T ss_pred CcccccCCc------CCceeeec--ccCCCCccccccccceee--eeccccCCccccC----------------------
Confidence 222 35999887 889876667888888888 3444443322211
Q ss_pred cCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC--CceE-EeCCCCCCCcceEEEEeccCCCCCcCC
Q 038499 353 SGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN--QNIK-ILGNTSTKRQAILSFNIHSSTINSSLG 429 (609)
Q Consensus 353 ~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~--p~i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~ 429 (609)
.|.|-......+.++.+.+ +.+.++..++.+++.+.|+++ +.+. +.+ ...++.+.+.. +
T Consensus 277 -~gnPla~aaa~a~L~~l~~-----~~~~~~v~~~g~~l~~~L~~l~~~~v~~vrg-----~Gl~~~ie~~~-~------ 338 (387)
T d1vefa1 277 -GGNPLAMAAGVAAIRYLER-----TRLWERAAELGPWFMEKLRAIPSPKIREVRG-----MGLMVGLELKE-K------ 338 (387)
T ss_dssp -TTCHHHHHHHHHHHHHHHH-----HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEE-----ETTEEEEEESS-C------
T ss_pred -CCCcchhhhcccchhhccc-----ccccchHhhhhHHHHHHHHhcCCCceEEEee-----cceEEEEEEeC-C------
Confidence 2344444444455554422 334455566666777777654 2222 211 12344444443 1
Q ss_pred CCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHH
Q 038499 430 ENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNE 509 (609)
Q Consensus 430 ~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~e 509 (609)
....+.+.+.+ .|+.+... .+..+|+++++.+|++
T Consensus 339 -----------~~~~~~~~~~~-~g~l~~~~---------------------------------g~~~ir~~Ppl~it~~ 373 (387)
T d1vefa1 339 -----------AAPYIARLEKE-HRVLALQA---------------------------------GPTVIRFLPPLVIEKE 373 (387)
T ss_dssp -----------SHHHHHHHHHH-HCEECEES---------------------------------STTEEEECCCTTCCHH
T ss_pred -----------chHHHHHHHHH-CCCeEEec---------------------------------CCCEEEEECCccCCHH
Confidence 24566666655 47765411 1468999999999999
Q ss_pred HHHHHHHHHHHHH
Q 038499 510 EFEFTLEALEFIA 522 (609)
Q Consensus 510 eid~ll~al~~v~ 522 (609)
|++.++++|++++
T Consensus 374 ~ld~~~~~i~~aL 386 (387)
T d1vefa1 374 DLERVVEAVRAVL 386 (387)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
|
| >d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Plasmodium yoelii yoelii [TaxId: 73239]
Probab=99.62 E-value=3.7e-13 Score=140.99 Aligned_cols=348 Identities=16% Similarity=0.177 Sum_probs=203.5
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ .|+|..++ |-..+.|.+++.+++....-.... . .......+.+.+.++.+.+
T Consensus 28 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~Ai~~q~~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~ 97 (404)
T d1z7da1 28 AKGVFVYDVNDK---RYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA---F----FSVPLGICERYLTNLLGYD 97 (404)
T ss_dssp EEBTEEEETTCC---EEEESSHHHHTTTTCBTCHHHHHHHHHHHTTCSCCCTT---S----EEHHHHHHHHHHHHHHTCS
T ss_pred eecCEEEECCCC---EEEEccccHHHHhhhcCcHHHHHHHHHHHHhCCCcccc---c----chHHHHHHHHhhhhccccc
Confidence 445566666664 48886543 456789999999888653111111 1 1223456777788888763
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH-HHHcC------------ce
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS-WRQSL------------AE 204 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~-~~~~G------------~~ 204 (609)
.+.|+.+|+.+.-..+-.+.... .+. ........ .++.....+|..... +...+ -.
T Consensus 98 ---~v~~~~sgs~a~~~a~k~ar~~~----~~~---~~~~~~~~-~~~~~~~~~hg~~~~~~~~~~~~~~~~~~~~~~~~ 166 (404)
T d1z7da1 98 ---KVLMMNTGAEANETAYKLCRKWG----YEV---KKIPENMA-KIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQ 166 (404)
T ss_dssp ---EEEEESSHHHHHHHHHHHHHHHH----HHT---SCCCTTCC-EEEEETTC--------------------------C
T ss_pred ---eeeeeccccchHHHHHHHHHHHH----hhc---cccccccc-ccccccccCCCCcccccccccccccccCCCCCCcc
Confidence 67788788886333322221100 000 00112221 344444444433221 11111 12
Q ss_pred EEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCccc--
Q 038499 205 VVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVE-- 278 (609)
Q Consensus 205 vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~-- 278 (609)
+..+|.+ +.++++.++.. +++..+++..+....|.+.| +++|.++|++||+++|+|+++++-...
T Consensus 167 ~~~~~~~-----~~~~l~~~~~~----~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~g~llI~DEV~tGfgRtG~ 237 (404)
T d1z7da1 167 FSKVPYD-----DLEALEEELKD----PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGK 237 (404)
T ss_dssp EEEECTT-----CHHHHHHHHTS----TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSS
T ss_pred ccccccc-----hHHHHHHHhcC----CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccCCCcccc
Confidence 2333332 67888887763 46778888888888899877 899999999999999999998632111
Q ss_pred -ccCCCCCCCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCC
Q 038499 279 -IDVRSGQTDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGT 356 (609)
Q Consensus 279 -id~~~~~~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gt 356 (609)
.-....+ -.+|+++++ |.++|. ..+|++++++++ .+.+.+...++.. .|.
T Consensus 238 ~~~~e~~g-v~PDivt~g--K~l~gG~~p~~~v~~~~~i--~~~~~~~~~~~T~-----------------------~gn 289 (404)
T d1z7da1 238 LLCVHHYN-VKPDVILLG--KALSGGHYPISAVLANDDI--MLVIKPGEHGSTY-----------------------GGN 289 (404)
T ss_dssp SSGGGGGT-CCCSEEEEC--GGGGTTSSCCEEEEECHHH--HTTCCTTCCCCTT-----------------------TTC
T ss_pred cccccccC-CCCCEEEEc--ccccCCCCCcccccchHHH--HccCCCCCcCcCC-----------------------CCC
Confidence 1111111 145988776 898754 347999999998 4455443222111 344
Q ss_pred hhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 357 PQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 357 p~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
|-..++..+.++... +..-.+.+.+....+.+.+.+.+++.+.+. +-+ +..++.+.+.. +.
T Consensus 290 pl~~aaa~a~L~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~vrg-----~Gl~~~i~~~~-~~----------- 351 (404)
T d1z7da1 290 PLAASICVEALNVLI-NEKLCENAEKLGGPFLENLKRELKDSKIVRDVRG-----KGLLCAIEFKN-EL----------- 351 (404)
T ss_dssp HHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEE-----ETTEEEEEECT-TT-----------
T ss_pred cchhhhhhhhhhhhh-cchhhhhhccchhHHHHHHHHHHhcCCCeEEEEe-----eCcEEEEEEcC-Cc-----------
Confidence 444444455555432 223345555666667777777777776553 322 22455555544 21
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTL 515 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll 515 (609)
.....+.+.|.+ .||.+++. .++.||+++++.+|++|+++++
T Consensus 352 ----~~~~~~~~~l~~-~Gl~~~~~---------------------------------~~~~ir~~Ppl~it~~~id~~~ 393 (404)
T d1z7da1 352 ----VNVLDICLKLKE-NGLITRDV---------------------------------HDKTIRLTPPLCITKEQLDECT 393 (404)
T ss_dssp ----CCHHHHHHHHHH-TTEECCEE---------------------------------TTTEEEECCCTTCCHHHHHHHH
T ss_pred ----ccHHHHHHHHHh-CCeEEecC---------------------------------CCCEEEEECCcCCCHHHHHHHH
Confidence 245667787866 59987621 1367999998889999999999
Q ss_pred HHHHHHHHhc
Q 038499 516 EALEFIAIYG 525 (609)
Q Consensus 516 ~al~~v~~~~ 525 (609)
++|+++++..
T Consensus 394 ~~l~~alk~~ 403 (404)
T d1z7da1 394 EIIVKTVKFF 403 (404)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhh
Confidence 9999998764
|
| >d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Ornithine aminotransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=4.4e-13 Score=140.27 Aligned_cols=346 Identities=17% Similarity=0.127 Sum_probs=204.4
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|.+.++.+-.|+ .|+|..++ |-..+.|.+++.+++......+.. . ......++.+.+.++.+.
T Consensus 30 ~~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~Av~~q~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~- 98 (404)
T d2byla1 30 GKGIYLWDVEGR---KYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLTSRA--F-----YNNVLGEYEEYITKLFNY- 98 (404)
T ss_dssp EEBTEEEETTCC---EEEESSHHHHTCTTCBTCHHHHHHHHHHHTTCCCCCTT--E-----EESSHHHHHHHHHHHHTC-
T ss_pred eecCEEEECCCC---EEEEecCCHHHHhhcCCCHHHHHHHHHHHhhCCCcccc--c-----ccchHHHHHHhhhhcccc-
Confidence 344445444553 58886643 556789999999988754211111 1 112345566777888776
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH-------cC-----ceE
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ-------SL-----AEV 205 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-------~G-----~~v 205 (609)
+.+.|+.+|+.+.-..+-.+..... + ......+...++......|......... .+ ..+
T Consensus 99 --~~v~~~~sGseA~e~Aik~ar~~~~----~---~~~~~~~~~~i~~~~~~~hg~t~~~~~~~~~~~~~~~~~p~~~~~ 169 (404)
T d2byla1 99 --HKVLPMNTGVEAGETACKLARKWGY----T---VKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGF 169 (404)
T ss_dssp --SEEEEESSHHHHHHHHHHHHHHHHH----H---TTCCCTTCCEEEEETTCCCCCSHHHHTTCCCHHHHTTSCSCCTTE
T ss_pred --cccccccCccccchhHHHHHHHHhh----h---ccccccccccccccCCCccccccceeccCCCcccccCCCCCCCCe
Confidence 3789998888863332221111000 0 0001222222444455445443333221 11 234
Q ss_pred EEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccccC
Q 038499 206 VEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDV 281 (609)
Q Consensus 206 v~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~ 281 (609)
..+|.+ |++++++++.. +++..+++.......|.+.+ +++|.++|++||+++|+|+++.+....-.+
T Consensus 170 ~~~p~~-----d~~~l~~~l~~----~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tGfgR~G~~ 240 (404)
T d2byla1 170 DIIPYN-----DLPALERALQD----PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 240 (404)
T ss_dssp EEECTT-----CHHHHHHHHTS----TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSS
T ss_pred eEeccc-----CHHHHHHhcCC----CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhcCeEEEeecccccccccccc
Confidence 556554 89999999974 46777888888888898876 889999999999999999998642111111
Q ss_pred CCCCC--CCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChh
Q 038499 282 RSGQT--DGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQ 358 (609)
Q Consensus 282 ~~~~~--~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~ 358 (609)
-.... -.+|+++++ |.++|. ..+|.+++++++ .+.+.+...++. ..|.|-
T Consensus 241 ~a~~~~gv~PDi~~~g--K~l~gG~~p~~av~~~~~i--~~~~~~~~~~~T-----------------------~~gnpl 293 (404)
T d2byla1 241 LAVDYENVRPDIVLLG--KALSGGLYPVSAVLCDDDI--MLTIKPGEHFST-----------------------YGGNPL 293 (404)
T ss_dssp SGGGGGTCCCSEEEEC--GGGGTTSSCCEEEEECHHH--HTTSCTTSSCCS-----------------------STTCHH
T ss_pred chhhhcCCCCCEEEEC--chhhCCCccceeeeechhh--hhccCCCCCCcC-----------------------CCcCHH
Confidence 11000 135988766 998765 357999999998 445544322211 124444
Q ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCC--ceE-EeCCCCCCCcceEEEEeccCCCCCcCCCCCCCC
Q 038499 359 VIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQ--NIK-ILGNTSTKRQAILSFNIHSSTINSSLGENTKTE 435 (609)
Q Consensus 359 i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p--~i~-v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~ 435 (609)
..+...+.++.+ + .+.+.++.+++.+++.+.|.++. .+. +-+ ...++.+.+.. ..
T Consensus 294 ~~aaa~a~L~~i--~---~~~l~~~~~~~g~~l~~~l~~l~~~~i~~vRg-----~Gl~~~i~~~~-~~----------- 351 (404)
T d2byla1 294 GCRVAIAALEVL--E---EENLAENADKLGIILRNELMKLPSDVVTAVRG-----KGLLNAIVIKE-TK----------- 351 (404)
T ss_dssp HHHHHHHHHHHH--H---HTTHHHHHHHHHHHHHHHHHTSCTTTEEEEEE-----ETTEEEEEECC-CS-----------
T ss_pred HHHHHHHHHHHH--H---hcCchhhhhHhhHHHHHHHHhhccccceeeee-----cccEEEEEEec-CC-----------
Confidence 444445555544 2 23455566667777777776542 121 111 22344444433 11
Q ss_pred CCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHH
Q 038499 436 TDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTL 515 (609)
Q Consensus 436 ~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll 515 (609)
......+...|.+ .||.+++. ..+.+|+++++.+|++|+|+++
T Consensus 352 ---~~~~~~~~~~l~~-~Gvl~~~~---------------------------------~~~~i~l~PpL~it~~~id~~~ 394 (404)
T d2byla1 352 ---DWDAWKVCLRLRD-NGLLAKPT---------------------------------HGDIIRFAPPLVIKEDELRESI 394 (404)
T ss_dssp ---SCCHHHHHHHHHH-TTEECEEE---------------------------------ETTEEEECCCTTCCHHHHHHHH
T ss_pred ---chhHHHHHHHHHh-CCeEEecC---------------------------------CCCEEEEECCcCCCHHHHHHHH
Confidence 1245567777766 49987621 1367999999999999999999
Q ss_pred HHHHHHHHh
Q 038499 516 EALEFIAIY 524 (609)
Q Consensus 516 ~al~~v~~~ 524 (609)
++|++.+..
T Consensus 395 ~~l~~al~~ 403 (404)
T d2byla1 395 EIINKTILS 403 (404)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHc
Confidence 999998764
|
| >d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Escherichia coli [TaxId: 562]
Probab=99.61 E-value=2.3e-13 Score=143.67 Aligned_cols=376 Identities=11% Similarity=0.064 Sum_probs=207.2
Q ss_pred HHHHHHHHHhhcc-------------CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCC
Q 038499 51 SEKKLTWLQSQII-------------GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTC 111 (609)
Q Consensus 51 ~~~~~~~~r~~~~-------------g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~ 111 (609)
..+++++-++.++ +.+.++.+..|+ -|+|..++ |-.++.|.+++.+++.... .....
T Consensus 3 ~~~l~~r~~~~~~~g~~~~~P~~~~~~~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~ai~~q~~~~~-~~~~~ 78 (425)
T d1sffa_ 3 NKELMQRRSQAIPRGVGQIHPIFADRAENCRVWDVEGR---EYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLS-HTCFQ 78 (425)
T ss_dssp HHHHHHHHHHHSCTTBCCSEEEEEEEEEBTEEEETTCC---EEEESSHHHHTCTTCBTCHHHHHHHHHHTTTCS-CCCTT
T ss_pred hHHHHHHHHHhcCCCCCCCCCceEEEEecCEEEeCCCC---EEEEcCcCHHhhcccCCcHHHHHHHHHHHhhcC-Ccccc
Confidence 3455666666655 234455555554 48887754 5567899999998886531 11111
Q ss_pred CchhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCc
Q 038499 112 DSYVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEH 191 (609)
Q Consensus 112 ~~~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h 191 (609)
. ...+...++.+.+.+.+..+..+.+.|+.+||++.-.++-.+.. .. +.+ .|+.-...|
T Consensus 79 -~----~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~--------------~t-~r~-~ii~~~~~y 137 (425)
T d1sffa_ 79 -V----LAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARA--------------AT-KRS-GTIAFSGAY 137 (425)
T ss_dssp -T----EECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHH--------------HH-TCC-EEEEETTCC
T ss_pred -c----ccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhh--------------hh-ccc-ceEeecCCC
Confidence 1 11334556777888888655444789998888863333222221 11 222 455555555
Q ss_pred cchH-HHHHHcCc-------------eEEEEecC--CCCCCCH---HHHHHHHhhhccCCCceEEEEecccCccccccC-
Q 038499 192 HSNL-LSWRQSLA-------------EVVEIGLD--DDGLLDI---EALRSKLELYKDAKRPILGSFSACSNVTGIYSD- 251 (609)
Q Consensus 192 ~s~~-~~~~~~G~-------------~vv~v~~~--~~g~ld~---e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d- 251 (609)
|+.. ......|. .....+.. ....... +..++.+......+++..+++..+....|.+.+
T Consensus 138 HG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~~~~ 217 (425)
T d1sffa_ 138 HGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASS 217 (425)
T ss_dssp CCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSCBCC
T ss_pred cCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcccCC
Confidence 5443 33322221 12222221 1111111 112222222122245668888888888888765
Q ss_pred ---HHHHHHHHHHhCCeEEEeccccC-Cccccc--CCCCCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCc
Q 038499 252 ---TRSIARLLHQYGGFACFDFAASG-PYVEID--VRSGQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPST 325 (609)
Q Consensus 252 ---l~~I~~la~~~g~~vivD~A~~~-~~~~id--~~~~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~ 325 (609)
++.|.++|++||+++|+|+++++ +-...- ....+ -.+|+++++ |.+||...+|.+++++++ .+.+.+..
T Consensus 218 ~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~g-v~PDi~~~g--K~l~gG~P~~av~~~~~i--~~~~~~~~ 292 (425)
T d1sffa_ 218 PAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMG-VAPDLTTFA--KSIAGGFPLAGVTGRAEV--MDAVAPGG 292 (425)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTT-SCCSEEEEC--GGGGTSSCCEEEEEEHHH--HTTSCTTS
T ss_pred HHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcC-CCccceecc--cccCCCcceEEEEEcHHH--HHhhCCCC
Confidence 67899999999999999999875 322110 00110 145988876 999876668999999998 44444432
Q ss_pred cCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-Ee
Q 038499 326 CGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-IL 404 (609)
Q Consensus 326 ~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~ 404 (609)
.|+. ..|.|-.++...+.++... +..-.+.+.+....+.+.+.+.+++.|.+. +.
T Consensus 293 ~~~T-----------------------~~gnpl~~aaa~a~L~~i~-~~~~~~~~~~~g~~l~~~l~~~~~~~~~v~~vr 348 (425)
T d1sffa_ 293 LGGT-----------------------YAGNPIACVAALEVLKVFE-QENLLQKANDLGQKLKDGLLAIAEKHPEIGDVR 348 (425)
T ss_dssp BCCS-----------------------SSSCHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEE
T ss_pred CCCC-----------------------CCcCHHHHHHHHHHHHHHH-HhhhhhhhhhhhhhhhhhhhhhHhhCCceEEEE
Confidence 2211 1244444444455555542 112234444444445555555556665433 22
Q ss_pred CCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHH
Q 038499 405 GNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRS 484 (609)
Q Consensus 405 ~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~ 484 (609)
+ ...++.+.+.. +.... .....-...+.+.|.+ .||.+.+.. +
T Consensus 349 g-----~Gl~~~i~f~~-~~~~~--------~~~~~~~~~~~~~l~~-~Gvl~~~~g----~------------------ 391 (425)
T d1sffa_ 349 G-----LGAMIAIELFE-DGDHN--------KPDAKLTAEIVARARD-KGLILLSCG----P------------------ 391 (425)
T ss_dssp E-----ETTEEEEEEBG-GGCTT--------SBCHHHHHHHHHHHHH-TTEECEEES----T------------------
T ss_pred c-----cccEEEEEEec-cCccC--------CccHHHHHHHHHHHHH-CCCEEeccC----C------------------
Confidence 2 22455554433 11000 0000113456666666 498876321 1
Q ss_pred HHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 485 AIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 485 ~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
.++.+|+++++.+|++|+++++++|++++++..
T Consensus 392 ---------~~n~i~~~PpL~it~~eid~~l~~l~~al~eik 424 (425)
T d1sffa_ 392 ---------YYNVLRILVPLTIEDAQIRQGLEIISQCFDEAK 424 (425)
T ss_dssp ---------TSCEEEECCCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred ---------CCCEEEEECCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 147899999999999999999999999987754
|
| >d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Proteus vulgaris [TaxId: 585]
Probab=99.60 E-value=9.2e-15 Score=156.41 Aligned_cols=339 Identities=14% Similarity=0.027 Sum_probs=182.1
Q ss_pred HHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHc
Q 038499 122 MVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQS 201 (609)
Q Consensus 122 ~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~ 201 (609)
.+.++++.+++++|.+ .++||.||+.+... ++.++- . + .+ ..+..+. .++.+.+.|.+........
T Consensus 76 ~~~~le~~~a~l~g~~---~~~~~~sGt~A~~~-a~~~~~-~-~---g~---~~~~~~~--~~i~~~~h~~t~~~~~~~~ 141 (465)
T d1ax4a_ 76 NYYDLKDKAKELFNYD---YIIPAHQGRGAENI-LFPVLL-K-Y---KQ---KEGKAKN--PVFISNFHFDTTAAHVELN 141 (465)
T ss_dssp HHHHHHHHHHHHHCCC---EEEEESSHHHHHHH-HHHHHH-H-H---HH---HTTCCSS--CEEEESSCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCC---EEEECCCcHHHHHH-HHHHHH-H-H---HH---hcCCCCC--eEEeccchhhhhHHHHHHc
Confidence 3567889999999984 78999888876433 333321 0 0 00 0112222 3555555555555556667
Q ss_pred CceEEEEec----------CCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccc-c---CHHHHHHHHHHhCCeEE
Q 038499 202 LAEVVEIGL----------DDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIY-S---DTRSIARLLHQYGGFAC 267 (609)
Q Consensus 202 G~~vv~v~~----------~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~-~---dl~~I~~la~~~g~~vi 267 (609)
|+..+.+.. ...+.+|+++|+++|++... ..+.+++++..+|..|.. . ++++|.++|++||+++|
T Consensus 142 g~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~ 220 (465)
T d1ax4a_ 142 GCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGA-DNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVV 220 (465)
T ss_dssp TCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCG-GGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEE
T ss_pred CCeeecccccccCCCCCCCCccCccCHHHHHHHHHhhcc-ccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEE
Confidence 888776632 23578999999999985321 245566777666665543 3 36789999999999999
Q ss_pred EeccccCCcccc------cCCCC--------CCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEe
Q 038499 268 FDFAASGPYVEI------DVRSG--------QTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNY 333 (609)
Q Consensus 268 vD~A~~~~~~~i------d~~~~--------~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~ 333 (609)
+|+|+..+.... .+... .....|++++|.||.+++|.+ |+++.++..............+
T Consensus 221 ~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~-g~l~~~~~~~~~~~~~~~~~~~----- 294 (465)
T d1ax4a_ 221 MDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIG-GLVAIRDNEEIFTLARQRCVPM----- 294 (465)
T ss_dssp EECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSC-EEEEESSCHHHHHHHHHHHHHH-----
T ss_pred EECcchhhhhcccccccccccccchhhhccccccccceeEeecccCcccccc-eeEeecchHHHHHhhhcccccc-----
Confidence 999976432110 00000 001358999999999987775 9998886541000000000000
Q ss_pred ecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEEeCCCCCCCcc
Q 038499 334 VNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKILGNTSTKRQA 413 (609)
Q Consensus 334 ~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v~~~~~~~r~~ 413 (609)
......+....... +++...+.+... +...++..+..+++.+.|.+. ++.+..+. . .
T Consensus 295 ---------------~~~~~~~~~~~~~~--~a~~~~~~e~~~-~~~~~~~~~~~~~l~~~L~~~-g~~~v~~~---~-~ 351 (465)
T d1ax4a_ 295 ---------------EGFVTYGGLAGRDM--AAMVQGLEEGTE-EEYLHYRIGQVKYLGDRLREA-GIPIQYPT---G-G 351 (465)
T ss_dssp ---------------TCSTTTTTCCHHHH--HHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHT-TCCBCSSC---C-S
T ss_pred ---------------ccCCCcchhhHHHH--HHHhhhhHHhhh-HHHHHHHHHHHHHHHHHHHhh-cCccccCC---C-c
Confidence 00000111122222 222222223333 334445556678888988876 55555542 1 2
Q ss_pred eEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCC
Q 038499 414 ILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGV 493 (609)
Q Consensus 414 ~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~ 493 (609)
+..+.-.. .. .....+...........|....||....... +..+.....+. -...
T Consensus 352 ~~~~~~~~-~~-------~~~~~~~~~~~~~~~~~ll~~~GI~~~~~~~---~~~~~~~~~g~-------------~~~~ 407 (465)
T d1ax4a_ 352 HAVFVDCK-KL-------VPQIPGDQFPAQAVINALYLESGVRAVEIGS---FLLGRDPATGE-------------QKHA 407 (465)
T ss_dssp SEEEEEST-TT-------CTTSCGGGCHHHHHHHHHHHHHCEECEEESH---HHHCBCTTTCS-------------BCCC
T ss_pred ceeeeehh-hh-------cCCCccccchhHHHHHHHHHhcCceeccccc---cccccccccCC-------------ccCC
Confidence 22222111 00 0001111122333334444557987542211 11110000000 0001
Q ss_pred CCcEEEEecC-CCCCHHHHHHHHHHHHHHHHhcccc
Q 038499 494 KPGWTRISFP-YYMSNEEFEFTLEALEFIAIYGQRF 528 (609)
Q Consensus 494 ~~g~iRls~~-~~~t~eeid~ll~al~~v~~~~~~~ 528 (609)
..+.+|++++ ...|+||+|+++++|+++.++..+.
T Consensus 408 ~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~~~~~i 443 (465)
T d1ax4a_ 408 DMEFMRLTIARRVYTNDHMDYIADALIGLKEKFATL 443 (465)
T ss_dssp SCCEEEEECCTTSSCHHHHHHHHHHHHTTHHHHTTC
T ss_pred CCCceEEeCCCCCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 2468999975 3459999999999999999887654
|
| >d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Beta-eliminating lyases domain: Tryptophan indol-lyase (tryptophanase) species: Escherichia coli [TaxId: 562]
Probab=99.60 E-value=2.2e-15 Score=161.39 Aligned_cols=179 Identities=16% Similarity=0.094 Sum_probs=119.8
Q ss_pred HHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHHcC
Q 038499 123 VHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQSL 202 (609)
Q Consensus 123 ~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~~G 202 (609)
+.++++.+++++|.+ .++++.||+.+....+...+. . .+.+ ....... .+..+...|..........|
T Consensus 76 ~~~le~~~a~l~G~~---~~~~~~sGt~A~~~a~~~~~~-~-----g~~~-~~~~~~~--~i~~~~~~~~~~~~~~~~~G 143 (467)
T d2v1pa1 76 YYALAESVKNIFGYQ---YTIPTHQGRGAEQIYIPVLIK-K-----REQE-KGLDRSK--MVAFSNYFFDTTQGHSQING 143 (467)
T ss_dssp HHHHHHHHHHHTCCS---EEEEECSSTTTHHHHHHHHHH-H-----HHHH-HCCCTTT--CEEEESSCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCC---EEEECCCCHHHHHHHHHHHhh-c-----cceE-ecCCCCc--EEEEecccccccHHHHHHcC
Confidence 567889999999986 568888999874443332221 0 0000 0012222 35555666666666778889
Q ss_pred ceEEEEecCC----------CCCCCHHHHHHHHhhhccCCCceEEEEecccCccc-ccc---CHHHHHHHHHHhCCeEEE
Q 038499 203 AEVVEIGLDD----------DGLLDIEALRSKLELYKDAKRPILGSFSACSNVTG-IYS---DTRSIARLLHQYGGFACF 268 (609)
Q Consensus 203 ~~vv~v~~~~----------~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG-~~~---dl~~I~~la~~~g~~viv 268 (609)
+.++.++.+. .+.+|+++|++++..... ..+.++++...+|..| .+. ++++|.++|++||+++|+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~-~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~ 222 (467)
T d2v1pa1 144 CTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGP-NNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVM 222 (467)
T ss_dssp CEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCG-GGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEE
T ss_pred CeeeecccccccccccccccccCCCHHHHHHHHhhcCc-cccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEE
Confidence 9999887643 357899999999975321 2466788888877765 333 578899999999999999
Q ss_pred eccccCCccc-----------ccCCC---CCCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 269 DFAASGPYVE-----------IDVRS---GQTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 269 D~A~~~~~~~-----------id~~~---~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
|+|+..+... ..+.. ......|++++|.||.+++|.| |+++.+++.
T Consensus 223 D~a~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~g-g~i~~~~~~ 282 (467)
T d2v1pa1 223 DSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMG-GLLCMKDDS 282 (467)
T ss_dssp ECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSC-EEEEECSGG
T ss_pred echhhhccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCc-eeEEecchh
Confidence 9997643211 00000 0012469999999999998875 888887765
|
| >d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Glutamate-1-semialdehyde aminomutase (aminotransferase) species: Synechococcus sp., strain GR6 [TaxId: 1131]
Probab=99.54 E-value=2.3e-12 Score=135.85 Aligned_cols=210 Identities=13% Similarity=0.044 Sum_probs=129.7
Q ss_pred CccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCCCC
Q 038499 66 NAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGGQE 139 (609)
Q Consensus 66 ~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~~~ 139 (609)
+.++.+..|+ -|+|..++ |-..+.|.+++.+++.... .... . .....++.+.+.+..+..
T Consensus 43 G~~l~D~~G~---~ylD~~~~~~~~~lGh~hp~i~~ai~~~~~~~~--~~~~----~---~~~~~~la~~~~~~~~~~-- 108 (427)
T d2gsaa_ 43 DAYAWDVDGN---RYIDYVGTWGPAICGHAHPEVIEALKVAMEKGT--SFGA----P---CALENVLAEMVNDAVPSI-- 108 (427)
T ss_dssp BTEEEETTSC---EEEESSGGGTTTTTCBTCHHHHHHHHHHHTTCS--CCSS----C---CHHHHHHHHHHHHHSTTC--
T ss_pred cCEEEECCCC---EEEEechhHHHHhccCCcHHHHHHHHHHHHhcC--cccc----c---hhHHHHHHHHHHhhCCcc--
Confidence 3444445553 48987654 4467899999998886531 1111 1 122345666777766543
Q ss_pred CcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHH--------HHHcC---------
Q 038499 140 DAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLS--------WRQSL--------- 202 (609)
Q Consensus 140 ~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~--------~~~~G--------- 202 (609)
+.+.|+.+|+++ +...++... .. .+ |..|+.-...||+.... ....+
T Consensus 109 ~~v~f~~sGseA-~e~Alk~ar-------------~~-t~-r~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~p~~~~~~~ 172 (427)
T d2gsaa_ 109 EMVRFVNSGTEA-CMAVLRLMR-------------AY-TG-RDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPK 172 (427)
T ss_dssp SEEEEESSHHHH-HHHHHHHHH-------------HH-HC-CCEEEEETTCCCCSCGGGCSSCCHHHHHTTCCSCSSSCH
T ss_pred ccccccCCcHHH-HHHHHHHHH-------------Hh-cC-CCeEEEEecccccCcceeeeecCCcccccCCCCCCCCcc
Confidence 478999888886 333333211 01 12 22566655555543211 11111
Q ss_pred ---ceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCC
Q 038499 203 ---AEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGP 275 (609)
Q Consensus 203 ---~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~ 275 (609)
.+...++. -|+++|++.++++ .+++..+++.......|.+.| +++|.++|++||+++|+|+++++.
T Consensus 173 ~~~~~~~~~~~-----~~~~~le~~~~~~--~~~iaavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~~~llI~DEv~tG~ 245 (427)
T d2gsaa_ 173 KTTANTLTTPY-----NDLEAVKALFAEN--PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMTGF 245 (427)
T ss_dssp HHHTTEEEECT-----TCHHHHHHHHTTS--TTTEEEEEECSSBCSSSCBCCCTTHHHHHHHHHHHTTCEEEEECTTTBT
T ss_pred cCccceeccCc-----chHHHHHHHHHhC--CCCeEEEEEcCCcCCCCCccCCHHHHHHHHHHHHHhceeeeeccccccc
Confidence 12333332 3899999999853 246678888888888899988 999999999999999999998653
Q ss_pred cccccCCCC--CCCCccEEEEcCCCCCCCCCCcEEEEEechh
Q 038499 276 YVEIDVRSG--QTDGYDAIFLSTHKFLGGPGSPGILLMTKAL 315 (609)
Q Consensus 276 ~~~id~~~~--~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~ 315 (609)
... .+-.. ..-..|+++++ |.+||...+|.+++++++
T Consensus 246 r~g-~~~~~~~~gi~PDi~~~g--K~lggG~p~~a~~~~~~i 284 (427)
T d2gsaa_ 246 RIA-YGGVQEKFGVTPDLTTLG--KIIGGGLPVGAYGGKREI 284 (427)
T ss_dssp TTB-TTCHHHHTTCCCSEEEEC--GGGGTTSCCEEEEECHHH
T ss_pred eec-ccchHHhcCCCHHHHhhh--hccCCCcceeeeeehHHH
Confidence 111 11000 00145998887 788776667888999998
|
| >d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: Glycine dehydrogenase subunits (GDC-P) domain: Glycine dehydrogenase subunit 2 (P-protein) species: Thermus thermophilus [TaxId: 274]
Probab=99.54 E-value=1.3e-12 Score=138.14 Aligned_cols=356 Identities=15% Similarity=0.101 Sum_probs=221.3
Q ss_pred HHHHHHHHHhhcCCccCCCCCCc-hhhHHHHHHHHHHHHHHHHHhCCCCCCcEEEeCChHHHHHHHHHHHhcccchhhHH
Q 038499 91 RYIENYIINNVLPFYGNTHTCDS-YVGQHTTNMVHEASNYIKKCLGGGQEDAMIFCGSGTTAAIKRLQEVMGIAVPSILR 169 (609)
Q Consensus 91 ~~v~~ai~~~~~~~~~n~~~~~~-~~~~~~~~~~~e~r~~ia~~~g~~~~~~vift~sGttaal~~l~~~l~~~~~~~~~ 169 (609)
+.|.+.+.+.+. .-+.-.. ..+.++-+.+-|.+..|+++.|.+-. +.-. -.|+|+....++.+.... +
T Consensus 79 P~v~~~~~~~~T----aYTPYQPaEiSQG~LQalfEfQtmi~eLTGMdva-NaS~-yDGatA~aeA~~ma~r~~-----~ 147 (471)
T d1wyub1 79 PKLHEEAARLFA----DLHPYQDPRTAQGALRLMWELGEYLKALTGMDAI-TLEP-AAGAHGELTGILIIRAYH-----E 147 (471)
T ss_dssp CHHHHHHHHTTS----SCCTTSCGGGCHHHHHHHHHHHHHHHHHHTCSEE-ECCC-SSHHHHHHHHHHHHHHHH-----H
T ss_pred cchhhhHHHHHh----ccCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcc-cccc-chHHHHHHHHHHHHHHHh-----h
Confidence 455666655432 2222111 34667889999999999999999632 2212 257776544444433210 0
Q ss_pred HHHHhhhcCC-CceEEEECCCCccchHHHHHHcCceEEEEecCCCCCCCHHHHHHHHhhhccCCCceEEEEecccCcccc
Q 038499 170 EKLIKCLRDE-ERWVVFVGPHEHHSNLLSWRQSLAEVVEIGLDDDGLLDIEALRSKLELYKDAKRPILGSFSACSNVTGI 248 (609)
Q Consensus 170 ~~~~~~l~~g-d~~~Vlv~~~~h~s~~~~~~~~G~~vv~v~~~~~g~ld~e~L~~al~~~~~~~~~~lv~~s~~sn~TG~ 248 (609)
+ -+.. ....+++.+..|..+.......+.+++.++.+..+..+.+.+..+.. +.+..+++..+++.-+.
T Consensus 148 ~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~a~v~v~~p~~~g~~ 217 (471)
T d1wyub1 148 D-----RGEGRTRRVVLVPDSAHGSNPATASMAGYQVREIPSGPEGEVDLEALKRELG-----PHVAALMLTNPNTLGLF 217 (471)
T ss_dssp H-----TTCTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECBCTTSSBCHHHHHHHCS-----TTEEEEEECSSCTTSCC
T ss_pred h-----cccccccccccCCcccccceeeeeecccceeecccccccccccchhhhhhhh-----ccccceeeccCCCcccc
Confidence 0 0111 11134444444444444455568888999988888899999998877 56778888888766555
Q ss_pred ccCHHHHHHHHHHhCCeEEEeccccCCcccccCCCCCCCCccEEEEcCCCCCCCC-----CCcEEEEEechhhccCCCCC
Q 038499 249 YSDTRSIARLLHQYGGFACFDFAASGPYVEIDVRSGQTDGYDAIFLSTHKFLGGP-----GSPGILLMTKALYQLGSFPP 323 (609)
Q Consensus 249 ~~dl~~I~~la~~~g~~vivD~A~~~~~~~id~~~~~~~~~D~v~~S~hK~lggp-----~g~G~L~~~~~~~~l~~~~p 323 (609)
..+.+++++++|++|..+++|.+....... +.+....+.|.++...|+.||.| .+.|++.+++++ .+.++-
T Consensus 218 e~~~~~~~~~~h~~g~~~~~~~~~~~~~~~--l~~p~~~g~div~vg~~q~~G~P~~~GGP~~G~~a~~~~~--~R~~PG 293 (471)
T d1wyub1 218 ERRILEISRLCKEAGVQLYYDGANLNAIMG--WARPGDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHL--APYLPV 293 (471)
T ss_dssp CTTHHHHHHHHHHHTCEEEEEGGGGGGTTT--TCCHHHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGG--GGGCCS
T ss_pred cchhhhhHHHHHhccccccccccchhhhhh--ccccCcccccccccccccccccccccccccccceeehhhh--hccCCC
Confidence 566899999999999999998763221110 11111126688888888876444 237899999998 445543
Q ss_pred CccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceEE
Q 038499 324 STCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIKI 403 (609)
Q Consensus 324 ~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~v 403 (609)
...+++...+.... .-+..-+|+..+|.+.+..+++++-+.+....|+.++.+++...+.|+.++|+. +|+++
T Consensus 294 RiV~~~~~~~~~~~------~REqhIrRe~actnqaL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~-~G~~~ 366 (471)
T d1wyub1 294 PLVERGEEGFYLDF------DRPKSIGRVRSFYGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKE-KGYRV 366 (471)
T ss_dssp CEEEECSSCEEEEC------CCTTCCCCSSSTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTCBC
T ss_pred ceecCCCccccccC------CCcccccchhhhhhhHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhh-cCcee
Confidence 33333221111101 111113455566666555556655555556779999999999999999999965 68887
Q ss_pred eCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHH
Q 038499 404 LGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIR 483 (609)
Q Consensus 404 ~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~ 483 (609)
..+. +...-| .+.. + ..++..++.+.|.+ +||..-... . |.
T Consensus 367 ~~~~--~ff~EF--vv~~-~--------------~~~~~~~i~k~L~~-~G~~~~~~~--~-p~---------------- 407 (471)
T d1wyub1 367 PYDG--PSMHEF--VAQP-P--------------EGFRALDLAKGLLE-LGFHPPTVY--F-PL---------------- 407 (471)
T ss_dssp SSCS--SCCSCE--EEBC-S--------------TTCCHHHHHHHHHH-TTCCCCEES--C-ST----------------
T ss_pred ccCc--ceeeEE--eecC-C--------------CCCCHHHHHHHHHH-cCCCCCccc--C-cC----------------
Confidence 6432 222222 3322 1 11467789999977 588532110 0 10
Q ss_pred HHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHHHhcc
Q 038499 484 SAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 484 ~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~~~~~ 526 (609)
..++.+-|++.--+|++|||+++++|++++++.+
T Consensus 408 ---------~~~~~llv~vTE~~tkedID~lv~aL~~i~~e~~ 441 (471)
T d1wyub1 408 ---------IVKEALMVEPTETEAKETLEAFAEAMGALLKKPK 441 (471)
T ss_dssp ---------TSTTCEEECCCTTSCHHHHHHHHHHHHHHHTSCH
T ss_pred ---------CCCCeEEEecCCCCCHHHHHHHHHHHHHHHHhhH
Confidence 0146788999989999999999999999998764
|
| >d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Dialkylglycine decarboxylase species: Pseudomonas cepacia [TaxId: 292]
Probab=99.43 E-value=2.3e-11 Score=128.28 Aligned_cols=362 Identities=13% Similarity=0.030 Sum_probs=191.6
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
+.+.++.+..|+ -|+|..++ |-..+.|.+++.+++.... ..+. ... +....++.++|.+.....
T Consensus 30 a~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-~~~~--~~~----~~~~~~la~~L~~~~~~~ 99 (431)
T d1zoda1 30 AKGSFVYDADGR---AILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLD-HLFS--EML----SRPVVDLATRLANITPPG 99 (431)
T ss_dssp EEBTEEECTTCC---EEEETTHHHHTCTTCBTCHHHHHHHHHHHHHCC-CCCT--TCC----CHHHHHHHHHHHHHSCTT
T ss_pred eecCEEEECCCC---EEEEcccCHHhhhhcCCCHHHHHHHHHHHhhcc-cccc--ccc----cHHHHHHHHHHHHhCCcc
Confidence 344555555664 48887643 5567899999999886531 1111 111 223345666777776544
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCccchHHHHHH-cC-----------ceE
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHHSNLLSWRQ-SL-----------AEV 205 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~s~~~~~~~-~G-----------~~v 205 (609)
-+ .+.|+.|||++.- ..+++.- .. .|.+ .|+.-...||+....... .+ ...
T Consensus 100 ~~-~v~f~~sGseA~e-~Alk~Ar-------------~~-t~r~-~i~~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~ 162 (431)
T d1zoda1 100 LD-RALLLSTGAESNE-AAIRMAK-------------LV-TGKY-EIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGS 162 (431)
T ss_dssp CC-EEEEESCHHHHHH-HHHHHHH-------------HH-HTCC-EEEEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTE
T ss_pred cc-eeeecccccchHH-HHHHHHH-------------Hh-cCCc-ceeecccccccccchhhcccccccccccCCcccCc
Confidence 34 8999988988633 3323210 01 1222 455555555554333221 11 122
Q ss_pred EEEecCCCC---------CCCH---HHHHHHHhhhccCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEe
Q 038499 206 VEIGLDDDG---------LLDI---EALRSKLELYKDAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFD 269 (609)
Q Consensus 206 v~v~~~~~g---------~ld~---e~L~~al~~~~~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD 269 (609)
..++..... ..+. +.+...+.. ...+++..+++.......|.+.+ +++|.++|++||+++|+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iAavi~EPi~g~~G~~~~~~~yl~~lr~lc~~~gillI~D 241 (431)
T d1zoda1 163 FAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDR-QSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILD 241 (431)
T ss_dssp EEECCCCTTSCCCEETTEECHHHHHHHHHHHHHH-HCCSCEEEEEECSEETTTTCEECCTTHHHHHHHHHHHHTCEEEEE
T ss_pred eeeeeecccccccccccchhhhhhHHHHHHHHHH-hccccccceeeccccccCCccCCCHHHHHHHHHHHHhcCceEEec
Confidence 333322110 1122 333333322 12245678888888877788866 899999999999999999
Q ss_pred ccccC-CcccccCCC-CCCCCccEEEEcCCCCCCCCCCcEEEEEechhhccCCCC-CCccCCCceEeecccccccccccc
Q 038499 270 FAASG-PYVEIDVRS-GQTDGYDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFP-PSTCGGGTVNYVNGFNEKDTLYLE 346 (609)
Q Consensus 270 ~A~~~-~~~~id~~~-~~~~~~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~-p~~~ggg~v~~~~~~~~~~~~~~~ 346 (609)
+++.+ +-...-... ...-..|+++++ |.++|...++.++++++.. .... +....+.
T Consensus 242 EV~tG~gRtG~~~~~~~~gv~PDi~~~g--K~l~gG~p~~av~~~~~~~--~~~~~~~~~~~~----------------- 300 (431)
T d1zoda1 242 EAQTGVGRTGTMFACQRDGVTPDILTLS--KTLGAGLPLAAIVTSAAIE--ERAHELGYLFYT----------------- 300 (431)
T ss_dssp CTTTTTTTTSSSSTHHHHTCCCSEEEEC--HHHHTTSSCEEEEECHHHH--HHHHHTTCCCCC-----------------
T ss_pred cccccccccccccccccCCCCcchhccc--cccccccccceeeeeecch--hhhhcccccccC-----------------
Confidence 99875 322211100 000145998887 8887766678888887662 1110 0000000
Q ss_pred cccccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCceE-EeCCCCCCCcceEEEEeccCCCC
Q 038499 347 DIEERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPNQNIK-ILGNTSTKRQAILSFNIHSSTIN 425 (609)
Q Consensus 347 ~~~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~p~i~-v~~~~~~~r~~~~~f~~~~~~~~ 425 (609)
...|.|...++..+.++....+ .-.++..+....+.+.+.+.+.+.|-+. +-+ ...++.+.+.. +..
T Consensus 301 -----T~~g~pl~~aaa~a~l~~i~~~-~~~~~~~~~g~~l~~~l~~~~~~~~~i~~vrG-----~Glm~~ie~~~-~~~ 368 (431)
T d1zoda1 301 -----THVSDPLPAAVGLRVLDVVQRD-GLVARANVMGDRLRRGLLDLMERFDCIGDVRG-----RGLLLGVEIVK-DRR 368 (431)
T ss_dssp -----TTTTCHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHHHHHHCTTEEEEEE-----ETTEEEEEEEE-ETT
T ss_pred -----CCCCCcchHHHHHHHHHHhhhh-hhhHHHHHHHHHHhhhhhhhhhcCCCeEEEee-----cceEEEEEEec-CCc
Confidence 0123444444444555544222 2233444444444444444444444332 222 12344443322 100
Q ss_pred CcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCC
Q 038499 426 SSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYY 505 (609)
Q Consensus 426 ~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~ 505 (609)
. ..........+.+.+.+ .|+..+.-. . + + ..+.||+++++.
T Consensus 369 ~--------~~~~~~~~~~i~~~~~~-~Gl~~~~~~--~-~-~-------------------------~~~~i~l~Ppl~ 410 (431)
T d1zoda1 369 T--------KEPADGLGAKITRECMN-LGLSMNIVQ--L-P-G-------------------------MGGVFRIAPPLT 410 (431)
T ss_dssp T--------TEECTTHHHHHHHHHHH-TTEECCEEC--C-T-T-------------------------SCCEEEECCCTT
T ss_pred c--------cCccHHHHHHHHHHHHH-hCcccCeee--e-c-C-------------------------CCCEEEEECCCC
Confidence 0 00000124556777766 487643100 0 0 0 247899999999
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 038499 506 MSNEEFEFTLEALEFIAIY 524 (609)
Q Consensus 506 ~t~eeid~ll~al~~v~~~ 524 (609)
+|++|+|+++++|++++++
T Consensus 411 it~~eid~~~~~l~~al~~ 429 (431)
T d1zoda1 411 VSEDEIDLGLSLLGQAIER 429 (431)
T ss_dssp CCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 9999999999999998875
|
| >d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA species: Escherichia coli [TaxId: 562]
Probab=99.41 E-value=7.3e-11 Score=124.05 Aligned_cols=355 Identities=13% Similarity=0.050 Sum_probs=197.0
Q ss_pred CCCccccCCCCCCceEEecCCCC------CCChHHHHHHHHHhhcCCccCCCCCCchhhHHHHHHHHHHHHHHHHHhCCC
Q 038499 64 GKNAEFDSPFGKRRLTYADHTAS------GRSLRYIENYIINNVLPFYGNTHTCDSYVGQHTTNMVHEASNYIKKCLGGG 137 (609)
Q Consensus 64 g~~~~~~~p~g~~~~vyld~~a~------g~~~~~v~~ai~~~~~~~~~n~~~~~~~~~~~~~~~~~e~r~~ia~~~g~~ 137 (609)
|++.++.+..|+ .|+|..++ |-..+.|.+++.+++...- ..... .. ..+...++.+++.+....+
T Consensus 32 ~~G~~l~D~dG~---~ylD~~~g~~~~~lGh~~p~i~~Ai~~q~~~~~-~~~~~-~~----~~~~~~~l~~~l~~~~~~~ 102 (429)
T d1s0aa_ 32 AEGCELILSDGR---RLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMS-HVMFG-GI----THAPAIELCRKLVAMTPQP 102 (429)
T ss_dssp EEBTEEEETTSC---EEEESSTTTTTCTTCBSCHHHHHHHHHHHHHCS-CCCCS-SE----ECHHHHHHHHHHHHHSCTT
T ss_pred eECCEEEECCCC---EEEECcccHHHHhhcCCcHHHHHHHHHHHHhcC-CcccC-Cc----cchHHHHHHHHHHhhhccC
Confidence 556667667775 38996543 4457899999998876531 11110 11 1223445566677777765
Q ss_pred CCCcEEEeCChHHHHHHHHHHHhcccchhhHHHHHHhhhcCCCceEEEECCCCcc-chHHHHHHcC-------------c
Q 038499 138 QEDAMIFCGSGTTAAIKRLQEVMGIAVPSILREKLIKCLRDEERWVVFVGPHEHH-SNLLSWRQSL-------------A 203 (609)
Q Consensus 138 ~~~~vift~sGttaal~~l~~~l~~~~~~~~~~~~~~~l~~gd~~~Vlv~~~~h~-s~~~~~~~~G-------------~ 203 (609)
.+ .+.|+.+|+.+.-..+-.+.... .+ -..+.+ .|+.-...|| ....+....+ .
T Consensus 103 ~~-~v~f~~sGseA~e~A~k~ar~~~----~~------~g~~~~-~ii~~~~~yHG~t~~a~~~t~~~~~~~~~~~~~~~ 170 (429)
T d1s0aa_ 103 LE-CVFLADSGSVAVEVAMKMALQYW----QA------KGEARQ-RFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLP 170 (429)
T ss_dssp CC-EEEEESSHHHHHHHHHHHHHHHH----HH------HTCCCC-EEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSC
T ss_pred cc-eeeeccccccchhhhhhhhhhee----ec------cccccc-EEEEecCCccccchhhhhhcCCccccccccCcccc
Confidence 44 89999788776322221111100 00 012222 3554444444 4433332211 1
Q ss_pred eEEEEecCC------CCCCCHHHHHHHHhhhccCCCceEEEEeccc-CccccccC----HHHHHHHHHHhCCeEEEeccc
Q 038499 204 EVVEIGLDD------DGLLDIEALRSKLELYKDAKRPILGSFSACS-NVTGIYSD----TRSIARLLHQYGGFACFDFAA 272 (609)
Q Consensus 204 ~vv~v~~~~------~g~ld~e~L~~al~~~~~~~~~~lv~~s~~s-n~TG~~~d----l~~I~~la~~~g~~vivD~A~ 272 (609)
.....+... ...-+++++++.+.+. .+++..+++.-+. +..|...+ +++|.++|++||+++|+|+++
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iaavivEPi~~~~gg~~~~~~~fl~~lr~lc~~~gillI~DEV~ 248 (429)
T d1s0aa_ 171 ENLFAPAPQSRMDGEWDERDMVGFARLMAAH--RHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIA 248 (429)
T ss_dssp CCEEECCCCSBC-CCCCGGGGHHHHHHHHHH--TTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTT
T ss_pred ccccccccccccccccchhhhhhhhhhhhhc--CCccceeeecceeccCCCccCCCHHHHHHHHHHHHHcCcceehhhcc
Confidence 222232211 1123456666655532 2456677777554 55556543 789999999999999999997
Q ss_pred cCC-cccccCCCCC--CCCccEEEEcCCCCCCCC-CCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccc
Q 038499 273 SGP-YVEIDVRSGQ--TDGYDAIFLSTHKFLGGP-GSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDI 348 (609)
Q Consensus 273 ~~~-~~~id~~~~~--~~~~D~v~~S~hK~lggp-~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~ 348 (609)
.+. -... +-... .-..|+++++ |.++|. ..+|++++++++.. .+.+...+...
T Consensus 249 tGfGRtG~-~~~~~~~~v~PDi~~~g--K~l~gG~~p~~av~~~~~i~~--~~~~~~~~~~~------------------ 305 (429)
T d1s0aa_ 249 TGFGRTGK-LFACEHAEIAPDILCLG--KALTGGTMTLSATLTTREVAE--TISNGEAGCFM------------------ 305 (429)
T ss_dssp TTTTTTSS-SSGGGGGTCCCSEEEEC--GGGGTSSSCCEEEEECHHHHH--HHHTSTTSSCS------------------
T ss_pred cccccccc-ccccccceecccccccc--cccccccccccchhhHHHHHh--ccCCCCCccee------------------
Confidence 743 2111 10000 0145998887 888544 45899999998732 21110000000
Q ss_pred cccccCCChhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC---CceE-EeCCCCCCCcceEEEEeccCCC
Q 038499 349 EERESGGTPQVIQMIRAALAFWVKEYIGHEVIKKQEETYIERALERLLPN---QNIK-ILGNTSTKRQAILSFNIHSSTI 424 (609)
Q Consensus 349 ~~r~~~gtp~i~~~~~aal~~~~~~~~g~~~i~~~~~~l~~~~~~~L~~~---p~i~-v~~~~~~~r~~~~~f~~~~~~~ 424 (609)
...-..|.|-..+...+.++.. + .+.+.++..++.+++.+.|.++ +.+. +-+ +..++.+.... +
T Consensus 306 ~~~T~~gnp~~~aaa~a~L~~i--~---~~~~~~~~~~~g~~l~~~L~~l~~~~~v~~vrg-----~Gl~~~~e~~~-~- 373 (429)
T d1s0aa_ 306 HGPTFMGNPLACAAANASLAIL--E---SGDWQQQVADIEVQLREQLAPARDAEMVADVRV-----LGAIGVVETTH-P- 373 (429)
T ss_dssp CCCTTTTCHHHHHHHHHHHHHH--H---TCHHHHHHHHHHHHHHHHHGGGGGCTTEEEEEE-----ETTEEEEEESS-C-
T ss_pred ecCCCCCCcccchhhhcccccc--c---cccccchhhHHHHHHHHHHHHhccCCceEEEee-----cccEEEEEecC-c-
Confidence 0000123444444445555544 2 2345666777777777777543 3332 222 12344454443 2
Q ss_pred CCcCCCCCCCCCCCCCChHHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCC
Q 038499 425 NSSLGENTKTETDKPLHGPFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPY 504 (609)
Q Consensus 425 ~~~~~~~~~~~~~~~l~~~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~ 504 (609)
.....+.+.+.++ |+.+++. .+.+|+++++
T Consensus 374 ---------------~~~~~~~~~~~~~-Gl~~~~~----------------------------------g~~i~~~Ppl 403 (429)
T d1s0aa_ 374 ---------------VNMAALQKFFVEQ-GVWIRPF----------------------------------GKLIYLMPPY 403 (429)
T ss_dssp ---------------BCHHHHHHHHHHT-TEECCCB----------------------------------TTEEEECCCT
T ss_pred ---------------ccHHHHHHHHHHC-CcEEEec----------------------------------CCEEEEeCCc
Confidence 2466788888764 9987631 2689999999
Q ss_pred CCCHHHHHHHHHHHHHHHHhcc
Q 038499 505 YMSNEEFEFTLEALEFIAIYGQ 526 (609)
Q Consensus 505 ~~t~eeid~ll~al~~v~~~~~ 526 (609)
-.|++|+|+++++|++++++.-
T Consensus 404 ~it~~eid~~~~~l~~al~e~~ 425 (429)
T d1s0aa_ 404 IILPQQLQRLTAAVNRAVQDET 425 (429)
T ss_dssp TCCHHHHHHHHHHHHHHTSSGG
T ss_pred CCCHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999876643
|
| >d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PLP-dependent transferase-like superfamily: PLP-dependent transferases family: GABA-aminotransferase-like domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.33 E-value=1.1e-10 Score=123.80 Aligned_cols=214 Identities=14% Similarity=0.078 Sum_probs=125.3
Q ss_pred HHHHHHHHhhhc-cCCCceEEEEecccCccccccC----HHHHHHHHHHhCCeEEEeccccCCcccccC---CCCCC-CC
Q 038499 218 IEALRSKLELYK-DAKRPILGSFSACSNVTGIYSD----TRSIARLLHQYGGFACFDFAASGPYVEIDV---RSGQT-DG 288 (609)
Q Consensus 218 ~e~L~~al~~~~-~~~~~~lv~~s~~sn~TG~~~d----l~~I~~la~~~g~~vivD~A~~~~~~~id~---~~~~~-~~ 288 (609)
.+++++.+.... ..+++.++++...+...|.+.+ +++|.++|++||+++|+|+++++....-.+ ..... ..
T Consensus 232 ~~~l~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~ 311 (461)
T d1ohwa_ 232 LEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDP 311 (461)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSC
T ss_pred HHHHHHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccC
Confidence 455665554211 2246678899998888888765 788999999999999999998653221111 11111 13
Q ss_pred ccEEEEcCCCCCCCCCCcEEEEEechhhccCCCCCCccCCCceEeecccccccccccccccccccCCChhHHHHHHHHHH
Q 038499 289 YDAIFLSTHKFLGGPGSPGILLMTKALYQLGSFPPSTCGGGTVNYVNGFNEKDTLYLEDIEERESGGTPQVIQMIRAALA 368 (609)
Q Consensus 289 ~D~v~~S~hK~lggp~g~G~L~~~~~~~~l~~~~p~~~ggg~v~~~~~~~~~~~~~~~~~~~r~~~gtp~i~~~~~aal~ 368 (609)
+|+++++ |.++| |++.....+ ....+...++. ..|.|.......+.++
T Consensus 312 PDiv~~g--K~l~~----g~~~~~~~~---~~~~~~~~~~T-----------------------~~g~p~~~aaa~a~l~ 359 (461)
T d1ohwa_ 312 ADVMTFS--KKMMT----GGFFHKEEF---RPNAPYRIFNT-----------------------WLGDPSKNLLLAEVIN 359 (461)
T ss_dssp CSEEEEC--GGGSS----EEEEECGGG---SCSSTTSSCCS-----------------------CSSCHHHHHHHHHHHH
T ss_pred chhhhhh--hcccc----ccccccccc---ccccccccccc-----------------------cccccccchhhcccch
Confidence 6888876 77763 555554433 22222211111 1344444444445555
Q ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCc-e-EEeCCCCCCCcceEEEEeccCCCCCcCCCCCCCCCCCCCCh
Q 038499 369 FWVKEYIGHEVIKKQEETYIERALERLLP----NQN-I-KILGNTSTKRQAILSFNIHSSTINSSLGENTKTETDKPLHG 442 (609)
Q Consensus 369 ~~~~~~~g~~~i~~~~~~l~~~~~~~L~~----~p~-i-~v~~~~~~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~l~~ 442 (609)
.... +.+.++.+++.+++.+.|.+ .|. + +|-+. ..++.+.+.. . -..
T Consensus 360 ~i~~-----~~l~~~~~~~g~~l~~~l~~l~~~~~~~i~~vrG~-----Gl~~~ie~~~-~----------------~~~ 412 (461)
T d1ohwa_ 360 IIKR-----EDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGR-----GTFCSFDTPD-E----------------SIR 412 (461)
T ss_dssp HHHH-----TTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEE-----TTEEEEECSS-H----------------HHH
T ss_pred hhhh-----hhHHHHHHHHHHHHHHHHHHHHhhCCCceEEeeee-----eEEEEEEcCC-H----------------HHH
Confidence 4422 23444445555555555443 343 2 23221 2344444433 1 124
Q ss_pred HHHHHHHhhhcCcEeccCcccCChhhhhhcCCChhHHHHHHHHHhhCCCCCCCcEEEEecCCCCCHHHHHHHHHHHHHHH
Q 038499 443 PFVATLLNDLFGIQARGGCACAGPYGHHLLDLDEAQSYQIRSAIQKGYVGVKPGWTRISFPYYMSNEEFEFTLEALEFIA 522 (609)
Q Consensus 443 ~~v~~~L~~~~GI~v~~G~~ca~p~~~~ll~i~~~~~~~~~~~~~~~~~~~~~g~iRls~~~~~t~eeid~ll~al~~v~ 522 (609)
..+.+.+.+ .|+.+++. .+..|||..++.+|++|++.++++|++++
T Consensus 413 ~~i~~~~~~-~Gll~~~~---------------------------------~~~~ir~~PpL~it~~eid~~~~~l~~~l 458 (461)
T d1ohwa_ 413 NKLISIARN-KGVMLGGC---------------------------------GDKSIRFRPTLVFRDHHAHLFLNIFSDIL 458 (461)
T ss_dssp HHHHHHHHH-TTEECEEE---------------------------------TTTEEECCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-CCeEEeeC---------------------------------CCCEEEEeCCcCCCHHHHHHHHHHHHHHH
Confidence 567777766 49988631 13689999999999999999999999998
Q ss_pred Hh
Q 038499 523 IY 524 (609)
Q Consensus 523 ~~ 524 (609)
.+
T Consensus 459 ~e 460 (461)
T d1ohwa_ 459 AD 460 (461)
T ss_dssp HT
T ss_pred hc
Confidence 75
|