Citrus Sinensis ID: 038516

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------71
Protein Sequence
MPPTHENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEFGKEVI
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHcccccccEEEHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHcccccHHHHHHccccccccccHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccEEEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEccEEEEEEEcccccccHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MPPTHENLCRNIATLIQICASITSLKRARQIHALVLTtnhipinaqspymYNNVLSMygrcgsirdarqvfdeipkrsLVSYNALIAAYSRDHDHAHLTFRLIDQMEfeclrpngltfTSLAQAVSLLEDQLMGSLLHAQVIKygssedtcvQTSLLgmysncgdfesAKRIFGLIGDKDAVAWNSIIlgnfkndkmKEGLSLFGAmvgsgvnptqFSYSMLLNACSRMGNFVCGKVIHARVIIsntqvdlpLENALLDMYSKCSDTQTAFSVFtrienpdlvswNSMIAGYmengngekAVDMFVALRRMSLLKPDEYTFAAIISATsalpasaygkplhALVIKTGYDSSVFVGTTLLNMyfkngdaespQKVFMLIAEKDIVLWTEMIighsrmgdgECAIKLFCKMCreglkcdnfalSGALSACADLAILKQGEMIHSqaektghgvemsVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALlggyshygmaEEAFMVFEVILehglrpdeITFLSLLSACSHSGLVERGKILWNQMkehslipghkhYSCMVSLLSRaglldeaenliaespysEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLrldpedgttHILLSNLYAATGRWDCVAKMRRKMkgsmlgkepglswieaknnvhvfssgdqshpkiDDAQAELHRLRGNMRKLVTDEFGKEVI
Flexible Loop (DISEMBL)
mppthenlCRNIATLIQICASITSLKRARQIHALVLttnhipinaqSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLsnlyaatgrWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFssgdqshpkIDDAQAELHRLRGNmrklvtdefgkevi
Low Complexity Region (SEG)
MPPTHENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEFGKEVI
Disordered region (IsUnstruct)
*******LCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRK**********GLSWIEAKNNVHV**************************************
Disordered Region (DISOPRED)
*PPTHENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDE*GKEV*
Disordered Region (DISEMBL)
MPPTHENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEFGKEVI
Disordered Region (DISPRO)
****HENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEFGKE*I
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPPTHENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKxxxxxxxxxxxxxxxxxxxxxEFGKEVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	708	2.2.26 [Sep-21-2011]
Q9SCT2	794	Pentatricopeptide repeat-	yes	no	0.990	0.882	0.568	0.0
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.956	0.636	0.331	1e-114
Q9LFI1	768	Pentatricopeptide repeat-	no	no	0.959	0.884	0.352	1e-111
Q9LYV3	822	Putative pentatricopeptid	no	no	0.884	0.761	0.335	1e-109
Q9ZUW3	868	Pentatricopeptide repeat-	no	no	0.954	0.778	0.321	1e-108
Q9FWA6	903	Pentatricopeptide repeat-	no	no	0.973	0.763	0.314	1e-106
P93005	727	Pentatricopeptide repeat-	no	no	0.925	0.900	0.320	1e-104
Q9STS9	706	Putative pentatricopeptid	no	no	0.957	0.960	0.322	1e-103
O04659	691	Pentatricopeptide repeat-	no	no	0.951	0.975	0.311	2e-99
Q7XJN6	860	Pentatricopeptide repeat-	no	no	0.937	0.772	0.341	4e-99

>sp|Q9SCT2|PP277_ARATH Pentatricopeptide repeat-containing protein At3g50420 OS=Arabidopsis thaliana GN=PCMP-E85 PE=2 SV=1

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/707 (56%), Positives = 522/707 (73%), Gaps = 6/707 (0%)

Query: 3   PTHENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCG 62
           P +E +  ++  L + C SIT LKRARQIHALVLT        +SPY  NN++SMY RCG
Sbjct: 89  PLNE-IASSVVELTRKCVSITVLKRARQIHALVLTAG-AGAATESPYANNNLISMYVRCG 146

Query: 63  SIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLA 122
           S+  AR+VFD++P R++VSYNAL +AYSR+ D A   F L   M FE ++PN  TFTSL 
Sbjct: 147 SLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTFTSLV 206

Query: 123 QAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAV 182
           Q  ++LED LMGS L++Q+IK G S++  VQTS+LGMYS+CGD ESA+RIF  + ++DAV
Sbjct: 207 QVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAV 266

Query: 183 AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARV 242
           AWN++I+G+ KNDK+++GL  F  M+ SGV+PTQF+YS++LN CS++G++  GK+IHAR+
Sbjct: 267 AWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARI 326

Query: 243 IISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAV 302
           I+S++  DLPL+NALLDMY  C D + AF VF RI NP+LVSWNS+I+G  ENG GE+A+
Sbjct: 327 IVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAM 386

Query: 303 DMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNM 362
            M+  L RMS  +PDEYTF+A ISAT+      +GK LH  V K GY+ SVFVGTTLL+M
Sbjct: 387 LMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSM 446

Query: 363 YFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFAL 422
           YFKN +AES QKVF ++ E+D+VLWTEMI+GHSR+G+ E A++ F +M RE  + D F+L
Sbjct: 447 YFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFSL 506

Query: 423 SGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH 482
           S  + AC+D+A+L+QGE+ H  A +TG    MSVCG+LVDMY KNG    AE+IFS   +
Sbjct: 507 SSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAETIFSLASN 566

Query: 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKIL 542
           PDLKCWN++LG YS +GM E+A   FE ILE+G  PD +T+LSLL+ACSH G   +GK L
Sbjct: 567 PDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLSLLAACSHRGSTLQGKFL 626

Query: 543 WNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKR 602
           WNQMKE  +  G KHYSCMV+L+S+AGL+DEA  LI +SP    + ELWRTLLS CV  R
Sbjct: 627 WNQMKEQGIKAGFKHYSCMVNLVSKAGLVDEALELIEQSPPGNNQAELWRTLLSACVNTR 686

Query: 603 NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWI 662
           N ++ + AAEQ+L+LDPED  THILLSNLYA  GRW+ VA+MRRK++G    K+PGLSWI
Sbjct: 687 NLQIGLYAAEQILKLDPEDTATHILLSNLYAVNGRWEDVAEMRRKIRGLASSKDPGLSWI 746

Query: 663 EA-KNNVHVFSSGDQSHPK-IDDAQAELHRLRGNMRKLVTDEFGKEV 707
           E   NN  VFSSGDQS+P+ +  AQ EL+RL+ NM  L    F K V
Sbjct: 747 EVNNNNTQVFSSGDQSNPEVVSQAQDELNRLKRNM--LCKSSFNKLV 791

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  413 bits (1062), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 230/693 (33%), Positives = 369/693 (53%), Gaps = 16/693 (2%)

Query: 12  IATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVF 71
            ++++  C  I SL+   Q+H LVL        +   Y+ N ++S+Y   G++  A  +F
Sbjct: 291 FSSVLSACKKIESLEIGEQLHGLVLKLGF----SSDTYVCNALVSLYFHLGNLISAEHIF 346

Query: 72  DEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQ 131
             + +R  V+YN LI   S+   +      L  +M  + L P+  T  SL  A S     
Sbjct: 347 SNMSQRDAVTYNTLINGLSQ-CGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTL 405

Query: 132 LMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGN 191
             G  LHA   K G + +  ++ +LL +Y+ C D E+A   F     ++ V WN +++  
Sbjct: 406 FRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAY 465

Query: 192 FKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDL 251
              D ++    +F  M    + P Q++Y  +L  C R+G+   G+ IH+++I +N Q++ 
Sbjct: 466 GLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA 525

Query: 252 PLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRM 311
            + + L+DMY+K     TA+ +  R    D+VSW +MIAGY +    +KA+  F   R+M
Sbjct: 526 YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTF---RQM 582

Query: 312 --SLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDA 369
               ++ DE      +SA + L A   G+ +HA    +G+ S +     L+ +Y + G  
Sbjct: 583 LDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKI 642

Query: 370 ESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSAC 429
           E     F      D + W  ++ G  + G+ E A+++F +M REG+  +NF    A+ A 
Sbjct: 643 EESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAA 702

Query: 430 ADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWN 489
           ++ A +KQG+ +H+   KTG+  E  VC +L+ MYAK G +  AE  F +V   +   WN
Sbjct: 703 SETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWN 762

Query: 490 ALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMK-E 548
           A++  YS +G   EA   F+ ++   +RP+ +T + +LSACSH GLV++G   +  M  E
Sbjct: 763 AIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSE 822

Query: 549 HSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVI 608
           + L P  +HY C+V +L+RAGLL  A+  I E P     + +WRTLLS CV  +N  +  
Sbjct: 823 YGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDAL-VWRTLLSACVVHKNMEIGE 881

Query: 609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNV 668
            AA  +L L+PED  T++LLSNLYA + +WD     R+KMK   + KEPG SWIE KN++
Sbjct: 882 FAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSI 941

Query: 669 HVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTD 701
           H F  GDQ+HP  D    E+H    ++ K  ++
Sbjct: 942 HSFYVGDQNHPLAD----EIHEYFQDLTKRASE 970

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1

 Score =  401 bits (1031), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 243/689 (35%), Positives = 371/689 (53%), Gaps = 10/689 (1%)

Query: 10  RNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQ 69
           R   +LI  C+S  SL + R+IH  +L +N          + N++LSMYG+CGS+RDAR+
Sbjct: 68  RTYISLICACSSSRSLAQGRKIHDHILNSN----CKYDTILNNHILSMYGKCGSLRDARE 123

Query: 70  VFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLE 129
           VFD +P+R+LVSY ++I  YS++   A    RL  +M  E L P+   F S+ +A +   
Sbjct: 124 VFDFMPERNLVSYTSVITGYSQNGQGAE-AIRLYLKMLQEDLVPDQFAFGSIIKACASSS 182

Query: 130 DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIIL 189
           D  +G  LHAQVIK  SS     Q +L+ MY        A R+F  I  KD ++W+SII 
Sbjct: 183 DVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIA 242

Query: 190 GNFKNDKMKEGLSLFGAMVGSGV-NPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQ 248
           G  +     E LS    M+  GV +P ++ +   L ACS +     G  IH   I S   
Sbjct: 243 GFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELA 302

Query: 249 VDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVAL 308
            +     +L DMY++C    +A  VF +IE PD  SWN +IAG   NG  ++AV +F  +
Sbjct: 303 GNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQM 362

Query: 309 RRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGD 368
           R    + PD  +  +++ A +   A + G  +H+ +IK G+ + + V  +LL MY    D
Sbjct: 363 RSSGFI-PDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSD 421

Query: 369 AESPQKVFM-LIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALS 427
                 +F       D V W  ++    +       ++LF  M     + D+  +   L 
Sbjct: 422 LYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLR 481

Query: 428 ACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKC 487
            C +++ LK G  +H  + KTG   E  +   L+DMYAK G L  A  IF  + + D+  
Sbjct: 482 GCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVS 541

Query: 488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMK 547
           W+ L+ GY+  G  EEA ++F+ +   G+ P+ +TF+ +L+ACSH GLVE G  L+  M+
Sbjct: 542 WSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQ 601

Query: 548 -EHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRM 606
            EH + P  +H SC+V LL+RAG L+EAE  I E    E  + +W+TLLS C  + N  +
Sbjct: 602 TEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKL-EPDVVVWKTLLSACKTQGNVHL 660

Query: 607 VIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKN 666
             +AAE +L++DP + T H+LL +++A++G W+  A +R  MK   + K PG SWIE ++
Sbjct: 661 AQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIED 720

Query: 667 NVHVFSSGDQSHPKIDDAQAELHRLRGNM 695
            +H+F + D  HP+ DD    LH +   M
Sbjct: 721 KIHIFFAEDIFHPERDDIYTVLHNIWSQM 749

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYV3|PP377_ARATH Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1

 Score =  396 bits (1018), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 213/634 (33%), Positives = 362/634 (57%), Gaps = 8/634 (1%)

Query: 49  YMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEF 108
           +  N +L+ Y + G  +DA  +FDE+P+R+ VS+  L   Y+   D   L  RL    E 
Sbjct: 85  FATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYAC-QDPIGLYSRL--HREG 141

Query: 109 ECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFES 168
             L P+   FTS  +    L+   +   LH+ ++K G   +  V  +L+  YS CG  +S
Sbjct: 142 HELNPH--VFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDS 199

Query: 169 AKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSR 228
           A+ +F  I  KD V W  I+    +N   ++ L L   M  +G  P  +++   L A   
Sbjct: 200 ARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIG 259

Query: 229 MGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSM 288
           +G F   K +H +++ +   +D  +   LL +Y++  D   AF VF  +   D+V W+ M
Sbjct: 260 LGAFDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFM 319

Query: 289 IAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTG 348
           IA + +NG   +AVD+F+ +R  + + P+E+T ++I++  +    S  G+ LH LV+K G
Sbjct: 320 IARFCQNGFCNEAVDLFIRMRE-AFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVG 378

Query: 349 YDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFC 408
           +D  ++V   L+++Y K    ++  K+F  ++ K+ V W  +I+G+  +G+G  A  +F 
Sbjct: 379 FDLDIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFR 438

Query: 409 KMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG 468
           +  R  +       S AL ACA LA +  G  +H  A KT +  +++V  SL+DMYAK G
Sbjct: 439 EALRNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCG 498

Query: 469 DLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS 528
           D++ A+S+F+++   D+  WNAL+ GYS +G+  +A  + +++ +   +P+ +TFL +LS
Sbjct: 499 DIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLS 558

Query: 529 ACSHSGLVERGKILWNQM-KEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR 587
            CS++GL+++G+  +  M ++H + P  +HY+CMV LL R+G LD+A  LI   PY E  
Sbjct: 559 GCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPY-EPS 617

Query: 588 IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRK 647
           + +WR +LS  + + N     ++AE++L+++P+D  T++L+SN+YA   +W  VA +R+ 
Sbjct: 618 VMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKS 677

Query: 648 MKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKI 681
           MK   + KEPGLSWIE + +VH FS G   HP +
Sbjct: 678 MKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDM 711

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1

 Score =  394 bits (1012), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 224/696 (32%), Positives = 389/696 (55%), Gaps = 20/696 (2%)

Query: 9   CRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDAR 68
           C   ++++++ A++      RQ+H   +    +        +  +++  Y +  + +D R
Sbjct: 93  CSIFSSVLKVSATLCDELFGRQLHCQCIKFGFL----DDVSVGTSLVDTYMKGSNFKDGR 148

Query: 69  QVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLL 128
           +VFDE+ +R++V++  LI+ Y+R+  +  +   L  +M+ E  +PN  TF   A A+ +L
Sbjct: 149 KVFDEMKERNVVTWTTLISGYARNSMNDEV-LTLFMRMQNEGTQPNSFTF---AAALGVL 204

Query: 129 EDQLMGSL---LHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWN 185
            ++ +G     +H  V+K G  +   V  SL+ +Y  CG+   A+ +F     K  V WN
Sbjct: 205 AEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWN 264

Query: 186 SIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIIS 245
           S+I G   N    E L +F +M  + V  ++ S++ ++  C+ +      + +H  V+  
Sbjct: 265 SMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKY 324

Query: 246 NTQVDLPLENALLDMYSKCSDTQTAFSVFTRIE-NPDLVSWNSMIAGYMENGNGEKAVDM 304
               D  +  AL+  YSKC+    A  +F  I    ++VSW +MI+G+++N   E+AVD+
Sbjct: 325 GFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDL 384

Query: 305 FVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYF 364
           F  ++R  + +P+E+T++ I++A   +  S     +HA V+KT Y+ S  VGT LL+ Y 
Sbjct: 385 FSEMKRKGV-RPNEFTYSVILTALPVISPS----EVHAQVVKTNYERSSTVGTALLDAYV 439

Query: 365 KNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSG 424
           K G  E   KVF  I +KDIV W+ M+ G+++ G+ E AIK+F ++ + G+K + F  S 
Sbjct: 440 KLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSS 499

Query: 425 ALSACADL-AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP 483
            L+ CA   A + QG+  H  A K+     + V  +L+ MYAK G++ +AE +F +    
Sbjct: 500 ILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK 559

Query: 484 DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILW 543
           DL  WN+++ GY+ +G A +A  VF+ + +  ++ D +TF+ + +AC+H+GLVE G+  +
Sbjct: 560 DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYF 619

Query: 544 NQM-KEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKR 602
           + M ++  + P  +H SCMV L SRAG L++A  +I   P +     +WRT+L+ C   +
Sbjct: 620 DIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP-NPAGSTIWRTILAACRVHK 678

Query: 603 NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWI 662
            + +   AAE+++ + PED   ++LLSN+YA +G W   AK+R+ M    + KEPG SWI
Sbjct: 679 KTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 738

Query: 663 EAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKL 698
           E KN  + F +GD+SHP  D    +L  L   ++ L
Sbjct: 739 EVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDL 774

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FWA6|PP207_ARATH Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2

 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 227/721 (31%), Positives = 387/721 (53%), Gaps = 32/721 (4%)

Query: 10  RNIATLIQICASITSLKRARQIHALVLTTN-HIPINAQSPYMYNNVLSMYGRCGSIRDAR 68
           R  A ++++C+ +       QIH +V+       + A S      +L MY +     ++ 
Sbjct: 181 RTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDVVAASA-----LLDMYAKGKRFVESL 235

Query: 69  QVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLL 128
           +VF  IP+++ VS++A+IA   ++ +   L  +   +M+      +   + S+ ++ + L
Sbjct: 236 RVFQGIPEKNSVSWSAIIAGCVQN-NLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAAL 294

Query: 129 EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSII 188
            +  +G  LHA  +K   + D  V+T+ L MY+ C + + A+ +F    + +  ++N++I
Sbjct: 295 SELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMI 354

Query: 189 LGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQ 248
            G  + +   + L LF  ++ SG+   + S S +  AC+ +     G  I+   I S+  
Sbjct: 355 TGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEGLQIYGLAIKSSLS 414

Query: 249 VDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVAL 308
           +D+ + NA +DMY KC     AF VF  +   D VSWN++IA + +NG G + + +FV++
Sbjct: 415 LDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSM 474

Query: 309 RRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGD 368
            R S ++PDE+TF +I+ A +   +  YG  +H+ ++K+G  S+  VG +L++MY K G 
Sbjct: 475 LR-SRIEPDEFTFGSILKACTG-GSLGYGMEIHSSIVKSGMASNSSVGCSLIDMYSKCGM 532

Query: 369 AESPQKVFMLIAEKD--------------------IVLWTEMIIGHSRMGDGECAIKLFC 408
            E  +K+     ++                      V W  +I G+      E A  LF 
Sbjct: 533 IEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQMLFT 592

Query: 409 KMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG 468
           +M   G+  D F  +  L  CA+LA    G+ IH+Q  K     ++ +C +LVDMY+K G
Sbjct: 593 RMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKCG 652

Query: 469 DLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS 528
           DL  +  +F + L  D   WNA++ GY+H+G  EEA  +FE ++   ++P+ +TF+S+L 
Sbjct: 653 DLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISILR 712

Query: 529 ACSHSGLVERGKILWNQMK-EHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR 587
           AC+H GL+++G   +  MK ++ L P   HYS MV +L ++G +  A  LI E P+    
Sbjct: 713 ACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEADD 772

Query: 588 IELWRTLLSTCVAKRNSRMVI-QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR 646
           + +WRTLL  C   RN+  V  +A   +LRLDP+D + + LLSN+YA  G W+ V+ +RR
Sbjct: 773 V-IWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRR 831

Query: 647 KMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEFGKE 706
            M+G  L KEPG SW+E K+ +HVF  GD++HP+ ++   EL  +   M+      F + 
Sbjct: 832 NMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKPFDDSSFVRG 891

Query: 707 V 707
           V
Sbjct: 892 V 892

Arabidopsis thaliana (taxid: 3702)

>sp|P93005|PP181_ARATH Pentatricopeptide repeat-containing protein At2g33680 OS=Arabidopsis thaliana GN=PCMP-E19 PE=3 SV=1

 Score =  380 bits (975), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 214/668 (32%), Positives = 362/668 (54%), Gaps = 13/668 (1%)

Query: 24  SLKRARQIHALVLTTNHIPINAQSPYMYNNVL-SMYGRCGSIRDARQVFDEIPKRSLVSY 82
           +L   R +H  ++ T      A +   + NVL + Y +CG +  A  +F+ I  + +VS+
Sbjct: 29  NLVAGRAVHGQIIRTG-----ASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSW 83

Query: 83  NALIAAYSRDH--DHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQ 140
           N+LI  YS++     ++   +L  +M  + + PN  T   + +A S L+   +G   HA 
Sbjct: 84  NSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHAL 143

Query: 141 VIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEG 200
           V+K  S  D  V TSL+GMY   G  E   ++F  + +++   W++++ G     +++E 
Sbjct: 144 VVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEA 203

Query: 201 LSLFGAMVGSGV--NPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALL 258
           + +F   +      + + + ++ +L++ +       G+ IH   I +     + L NAL+
Sbjct: 204 IKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALV 263

Query: 259 DMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDE 318
            MYSKC     A  +F    + + ++W++M+ GY +NG   +AV +F  +    + KP E
Sbjct: 264 TMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGI-KPSE 322

Query: 319 YTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFML 378
           YT   +++A S +     GK LH+ ++K G++  +F  T L++MY K G     +K F  
Sbjct: 323 YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDC 382

Query: 379 IAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQG 438
           + E+D+ LWT +I G+ +  D E A+ L+ +M   G+  ++  ++  L AC+ LA L+ G
Sbjct: 383 LQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELG 442

Query: 439 EMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHY 498
           + +H    K G G+E+ +  +L  MY+K G L     +F +  + D+  WNA++ G SH 
Sbjct: 443 KQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHN 502

Query: 499 GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKH 557
           G  +EA  +FE +L  G+ PD++TF++++SACSH G VERG   +N M +   L P   H
Sbjct: 503 GQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDH 562

Query: 558 YSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL 617
           Y+CMV LLSRAG L EA+  I ES   +  + LWR LLS C       + + A E+++ L
Sbjct: 563 YACMVDLLSRAGQLKEAKEFI-ESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMAL 621

Query: 618 DPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQS 677
              + +T++ LS +Y A GR   V ++ + M+ + + KE G SWIE KN  HVF  GD  
Sbjct: 622 GSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTM 681

Query: 678 HPKIDDAQ 685
           HP I++ +
Sbjct: 682 HPMIEETK 689

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STS9|PP268_ARATH Putative pentatricopeptide repeat-containing protein At3g47840 OS=Arabidopsis thaliana GN=PCMP-E43 PE=3 SV=1

 Score =  376 bits (966), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 227/703 (32%), Positives = 377/703 (53%), Gaps = 25/703 (3%)

Query: 10  RNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQ 69
           RN  T+ + C +  SL +      +V  +N + +     +  N+ L      G++R ARQ
Sbjct: 6   RNCGTIQRFCTTSISLLQKPVEENIVRISNQVMVK----FDPNSHLRSLINAGNLRAARQ 61

Query: 70  VFDEIPKRSLVSYNALIAAY--SRDHDHAHLTF---RLIDQMEFECLRPNGLTFTSLAQA 124
           VFD++P   +VS+ ++I  Y  + + D A + F   R++D      + P+    + + +A
Sbjct: 62  VFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDH----AVSPDTSVLSVVLKA 117

Query: 125 VSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAW 184
                +   G  LHA  +K        V +SLL MY   G  + + R+F  +  ++AV W
Sbjct: 118 CGQSSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTW 177

Query: 185 NSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVII 244
            +II G     + KEGL+ F  M  S      +++++ L AC+ +     GK IH  VI+
Sbjct: 178 TAIITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIV 237

Query: 245 SNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDM 304
                 L + N+L  MY++C + Q    +F  +   D+VSW S+I  Y   G   KAV+ 
Sbjct: 238 RGFVTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVET 297

Query: 305 FVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYF 364
           F+ +R  S + P+E TFA++ SA ++L    +G+ LH  V+  G + S+ V  +++ MY 
Sbjct: 298 FIKMRN-SQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYS 356

Query: 365 KNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSG 424
             G+  S   +F  +  +DI+ W+ +I G+ + G GE   K F  M + G K  +FAL+ 
Sbjct: 357 TCGNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALAS 416

Query: 425 ALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPD 484
            LS   ++A+++ G  +H+ A   G     +V  SL++MY+K G ++ A  IF +    D
Sbjct: 417 LLSVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDD 476

Query: 485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWN 544
           +    A++ GY+ +G ++EA  +FE  L+ G RPD +TF+S+L+AC+HSG ++ G   +N
Sbjct: 477 IVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGFHYFN 536

Query: 545 QMKE-HSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRN 603
            M+E +++ P  +HY CMV LL RAG L +AE +I E  + +  + +W TLL  C AK +
Sbjct: 537 MMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDV-VWTTLLIACKAKGD 595

Query: 604 SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIE 663
                +AAE++L LDP   T  + L+N+Y++TG  +  A +R+ MK   + KEPG S I+
Sbjct: 596 IERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIK 655

Query: 664 AKNNVHVFSSGDQSHPKIDD---------AQAELHRLRGNMRK 697
            K+ V  F SGD+ HP+ +D         + AE HR    +++
Sbjct: 656 IKDCVSAFVSGDRFHPQSEDIYNILELAVSGAEAHRFDCTLKR 698

Arabidopsis thaliana (taxid: 3702)

>sp|O04659|PP398_ARATH Pentatricopeptide repeat-containing protein At5g27110 OS=Arabidopsis thaliana GN=PCMP-E14 PE=2 SV=2

 Score =  363 bits (933), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 216/694 (31%), Positives = 384/694 (55%), Gaps = 20/694 (2%)

Query: 11  NIATLIQICASIT-SLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQ 69
            + +L++ C + T SL+R + +H  +LT        +   +  +++++Y  C     AR 
Sbjct: 5   KLLSLLRECTNSTKSLRRIKLVHQRILTLGL----RRDVVLCKSLINVYFTCKDHCSARH 60

Query: 70  VFDEIPKRSLVS-YNALIAAYSRD---HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAV 125
           VF+    RS V  +N+L++ YS++   HD   +  RL++        P+  TF ++ +A 
Sbjct: 61  VFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLN---CSICVPDSFTFPNVIKAY 117

Query: 126 SLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWN 185
             L  + +G ++H  V+K G   D  V +SL+GMY+    FE++ ++F  + ++D  +WN
Sbjct: 118 GALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWN 177

Query: 186 SIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIIS 245
           ++I   +++ + ++ L LFG M  SG  P   S ++ ++ACSR+     GK IH + +  
Sbjct: 178 TVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKK 237

Query: 246 NTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMF 305
             ++D  + +AL+DMY KC   + A  VF ++    LV+WNSMI GY+  G+ +  V++ 
Sbjct: 238 GFELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEI- 296

Query: 306 VALRRMSL--LKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMY 363
             L RM +   +P + T  +I+ A S      +GK +H  VI++  ++ ++V  +L+++Y
Sbjct: 297 --LNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLY 354

Query: 364 FKNGDAESPQKVFMLIAEKDIV-LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFAL 422
           FK G+A   + VF    +KD+   W  MI  +  +G+   A++++ +M   G+K D    
Sbjct: 355 FKCGEANLAETVFSK-TQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTF 413

Query: 423 SGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH 482
           +  L AC+ LA L++G+ IH    ++    +  +  +L+DMY+K G+ + A  IF+ +  
Sbjct: 414 TSVLPACSQLAALEKGKQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPK 473

Query: 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKIL 542
            D+  W  ++  Y  +G   EA   F+ + + GL+PD +T L++LSAC H+GL++ G   
Sbjct: 474 KDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKF 533

Query: 543 WNQMK-EHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAK 601
           ++QM+ ++ + P  +HYSCM+ +L RAG L EA  +I ++P +    EL  TL S C   
Sbjct: 534 FSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCLH 593

Query: 602 RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSW 661
               +  + A  ++   P+D +T+++L NLYA+   WD   ++R KMK   L K+PG SW
Sbjct: 594 LEHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCSW 653

Query: 662 IEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNM 695
           IE  + V  F + D+SH + ++    L  L G+M
Sbjct: 654 IEMSDKVCHFFAEDRSHLRAENVYECLALLSGHM 687

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XJN6|PP197_ARATH Pentatricopeptide repeat-containing protein At2g40720 OS=Arabidopsis thaliana GN=PCMP-E26 PE=3 SV=1

 Score =  363 bits (931), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 230/673 (34%), Positives = 363/673 (53%), Gaps = 9/673 (1%)

Query: 26  KRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRS-LVSYNA 84
           +  +QIH  +L  N +  ++   ++   ++ MY + G   DA +VF EI  +S +V +N 
Sbjct: 187 EEGKQIHGFMLR-NSLDTDS---FLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNV 242

Query: 85  LIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKY 144
           +I  +         +  L    +   ++    +FT    A S  E+   G  +H  V+K 
Sbjct: 243 MIVGFG-GSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKM 301

Query: 145 GSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLF 204
           G   D  V TSLL MYS CG    A+ +F  + DK    WN+++    +ND     L LF
Sbjct: 302 GLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLF 361

Query: 205 GAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKC 264
           G M    V P  F+ S +++ CS +G +  GK +HA +     Q    +E+ALL +YSKC
Sbjct: 362 GFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKC 421

Query: 265 SDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMS-LLKPDEYTFAA 323
                A+ VF  +E  D+V+W S+I+G  +NG  ++A+ +F  ++     LKPD     +
Sbjct: 422 GCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTS 481

Query: 324 IISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD 383
           + +A + L A  +G  +H  +IKTG   +VFVG++L+++Y K G  E   KVF  ++ ++
Sbjct: 482 VTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTEN 541

Query: 384 IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHS 443
           +V W  MI  +SR    E +I LF  M  +G+  D+ +++  L A +  A L +G+ +H 
Sbjct: 542 MVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHG 601

Query: 444 QAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEE 503
              + G   +  +  +L+DMY K G  + AE+IF ++ H  L  WN ++ GY  +G    
Sbjct: 602 YTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCIT 661

Query: 504 AFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKE-HSLIPGHKHYSCMV 562
           A  +F+ + + G  PD++TFLSL+SAC+HSG VE GK ++  MK+ + + P  +HY+ MV
Sbjct: 662 ALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMV 721

Query: 563 SLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG 622
            LL RAGLL+EA + I   P  E    +W  LLS      N  + I +AE++LR++PE G
Sbjct: 722 DLLGRAGLLEEAYSFIKAMPI-EADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERG 780

Query: 623 TTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKID 682
           +T++ L NLY   G  +  AK+   MK   L K+PG SWIE  +  +VF SG  S P   
Sbjct: 781 STYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVFFSGGSSSPMKA 840

Query: 683 DAQAELHRLRGNM 695
           +    L+RL+ NM
Sbjct: 841 EIFNVLNRLKSNM 853

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	708
255562697	704	pentatricopeptide repeat-containing prot	0.977	0.982	0.621	0.0
356540705	715	PREDICTED: pentatricopeptide repeat-cont	0.970	0.960	0.595	0.0
357483095	985	Pentatricopeptide repeat-containing prot	0.980	0.704	0.579	0.0
297819724	764	pentatricopeptide repeat-containing prot	0.971	0.900	0.582	0.0
15229753	794	pentatricopeptide repeat-containing prot	0.990	0.882	0.568	0.0
449460648	696	PREDICTED: pentatricopeptide repeat-cont	0.974	0.991	0.544	0.0
224084249	561	predicted protein [Populus trichocarpa]	0.778	0.982	0.658	0.0
449502762	690	PREDICTED: pentatricopeptide repeat-cont	0.919	0.943	0.518	0.0
359359183	760	putative pentatricopeptide [Oryza minuta	0.949	0.884	0.470	1e-179
115461254	719	Os04g0672700 [Oryza sativa Japonica Grou	0.947	0.933	0.466	1e-175

>gi|255562697|ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223538432|gb|EEF40038.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  899 bits (2322), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/692 (62%), Positives = 541/692 (78%)

Query: 12  IATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVF 71
           +  LI+ C +I SLK+ARQ+HAL+L T      AQSPY+ NN+++MY  CGS  DA+++F
Sbjct: 7   LEALIKKCTTINSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHCGSRSDAQKLF 66

Query: 72  DEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQ 131
           D +P+++ +SYNALIAAY RD  +  L+F+L   M  + LRPNG TFTSL Q   LLED 
Sbjct: 67  DRMPRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRLRPNGATFTSLLQVCCLLEDW 126

Query: 132 LMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGN 191
            +GS LH QV+++G   D CVQT LLGMYS+CGD ESA ++FG   +KD V WNS+I G 
Sbjct: 127 FLGSTLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGY 186

Query: 192 FKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDL 251
            KND++KE LSLFG MV SG   TQF+ SM LNACS++G +  G++IHA+VI+SN   D 
Sbjct: 187 LKNDRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVIVSNILPDS 246

Query: 252 PLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRM 311
            L+NALLDMY  C D +TA ++F+RI+ P L+SWNSMI+ + +N  GEKA+ +FV L  M
Sbjct: 247 ALQNALLDMYYSCGDRRTALTLFSRIQIPSLISWNSMISWFAKNEEGEKAMGLFVKLLGM 306

Query: 312 SLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAES 371
           S  KPDEYTF AIISAT    A+ YG+PLHA VIK G   SVF+G  LL+MYF+N D E+
Sbjct: 307 STCKPDEYTFTAIISATGEFRATDYGQPLHAQVIKAGLQWSVFIGNALLSMYFRNSDVEA 366

Query: 372 PQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACAD 431
            + VF L+ EKD+VLWTEMI+GH R+GDGE AIKLFCKM +EG K D+FALSGALS CAD
Sbjct: 367 ARGVFSLMEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGHKSDSFALSGALSVCAD 426

Query: 432 LAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNAL 491
           LAILKQG+M+H+QA KTG   E+SVCGSLVDMYAKNG+L+AA+ IFSQV +PDLKCWN++
Sbjct: 427 LAILKQGQMLHTQAVKTGCEAEISVCGSLVDMYAKNGNLQAAQLIFSQVCNPDLKCWNSM 486

Query: 492 LGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSL 551
           +GGYSH+GMAEEA M+F  +LE GL PD++TFLSLLSAC+HSGLVE+GK LW+ MK++ +
Sbjct: 487 IGGYSHHGMAEEAVMLFAEVLECGLTPDQVTFLSLLSACNHSGLVEKGKFLWDYMKKNGI 546

Query: 552 IPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAA 611
            PG KHYSCMVSLLSRAGLLDEAE LI ES  SE  ++LWRTLLS+CV +RN  +  +AA
Sbjct: 547 TPGPKHYSCMVSLLSRAGLLDEAEELITESTCSEEHLKLWRTLLSSCVNRRNLTVGARAA 606

Query: 612 EQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVF 671
           +QVLRLDPED  T+ILLSNLYA TGRWD VA++R+K++G ML K+PG+SWIEAKN++HVF
Sbjct: 607 KQVLRLDPEDSATYILLSNLYAVTGRWDGVAELRKKIRGLMLEKDPGVSWIEAKNDIHVF 666

Query: 672 SSGDQSHPKIDDAQAELHRLRGNMRKLVTDEF 703
           SS DQS+P ID+AQAE+ RL+ NM + VTDE+
Sbjct: 667 SSDDQSNPVIDEAQAEVRRLQRNMIRSVTDEY 698

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356540705|ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein At3g50420-like [Glycine max]

 Score =  855 bits (2208), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/690 (59%), Positives = 528/690 (76%), Gaps = 3/690 (0%)

Query: 14  TLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDE 73
           +L+Q C+++TSL+ ARQ+HAL+LTT      +QSP++YNN+LSMY RCGS+ D+  VFD+
Sbjct: 15  SLLQKCSTVTSLREARQLHALILTTT-TAFTSQSPFVYNNILSMYARCGSLTDSHLVFDK 73

Query: 74  IPKRSLVSYNALIAAYSR-DHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQL 132
           +P+R++VSYNAL+AAYSR   +HA     L  QM    LRP+  TFTSL QA SLLE   
Sbjct: 74  MPRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEHWW 133

Query: 133 MGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNF 192
            GS LHA+  K G + D C+QTSLL MYSNCGD  SA+ +F  + D+D VAWNS+I+G  
Sbjct: 134 FGSSLHAKGFKLGLN-DICLQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLIMGYL 192

Query: 193 KNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLP 252
           KN+K++EG+ LF  M+  G  PTQF+Y M+LN+CSR+ ++  G++IHA VI+ N  +DL 
Sbjct: 193 KNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVSLDLH 252

Query: 253 LENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMS 312
           L+NAL+DMY    + QTA+ +F+R+ENPDLVSWNSMIAGY EN +GEKA+++FV L+ M 
Sbjct: 253 LQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMC 312

Query: 313 LLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESP 372
             KPD+YT+A IISAT   P+S+YGK LHA VIKTG++ SVFVG+TL++MYFKN ++++ 
Sbjct: 313 FPKPDDYTYAGIISATGVFPSSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKNHESDAA 372

Query: 373 QKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADL 432
            +VF  I+ KD+VLWTEMI G+S+M DG CAI+ F +M  EG + D++ LSG ++ACA+L
Sbjct: 373 WRVFCSISVKDVVLWTEMITGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGVVNACANL 432

Query: 433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALL 492
           A+L+QGE+IH  A K G+ VEMSV GSL+DMYAKNG L AA  +FSQV  PDLKCWN++L
Sbjct: 433 AVLRQGEIIHCYAVKLGYDVEMSVSGSLIDMYAKNGSLEAAYLVFSQVSEPDLKCWNSML 492

Query: 493 GGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLI 552
           GGYSH+GM EEA  VFE IL+ GL PD++TFLSLLSACSHS LVE+GK LWN M    LI
Sbjct: 493 GGYSHHGMVEEALQVFEEILKQGLIPDQVTFLSLLSACSHSRLVEQGKFLWNYMNSIGLI 552

Query: 553 PGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAE 612
           PG KHYSCMV+L SRA LL+EAE +I +SPY E  +ELWRTLLS CV  +N ++ I AAE
Sbjct: 553 PGLKHYSCMVTLFSRAALLEEAEEIINKSPYIEDNLELWRTLLSACVINKNFKVGIHAAE 612

Query: 613 QVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFS 672
           +VLRL  EDG T +LLSNLYAA  +WD VA++RR M+G ML K PGLSWIEAKN++HVFS
Sbjct: 613 EVLRLKAEDGPTLVLLSNLYAAARKWDKVAEIRRNMRGLMLDKYPGLSWIEAKNDIHVFS 672

Query: 673 SGDQSHPKIDDAQAELHRLRGNMRKLVTDE 702
           SGDQSHPK D+  AELHRL+ NM +   D+
Sbjct: 673 SGDQSHPKADEVHAELHRLKRNMIRTENDD 702

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357483095|ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355513169|gb|AES94792.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  837 bits (2161), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 405/699 (57%), Positives = 527/699 (75%), Gaps = 5/699 (0%)

Query: 8   LCRNIAT---LIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSI 64
           LC ++ T   L++ C   TSL+ ARQ+HAL+LTT +    ++S ++YNN++SMY RCGS+
Sbjct: 275 LCFSVITDTLLLKKCRITTSLQEARQLHALLLTTTNAS-GSKSAFLYNNIISMYSRCGSL 333

Query: 65  RDARQVFDEIPKRSLVSYNALIAAYSR-DHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQ 123
            DA QVFD++P+R+ VSYNAL+AAYSR    H    F L  QME   LRP+ +T TSL Q
Sbjct: 334 EDAHQVFDKMPQRTHVSYNALLAAYSRVSEQHCVYAFNLYTQMENMGLRPSNMTITSLLQ 393

Query: 124 AVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVA 183
           A SL  D L+G LLHA+ +K+G   D CVQTSLL MYS+C D  SA+ +F  + ++D VA
Sbjct: 394 AASLHGDLLIGLLLHAKSLKFGFLNDICVQTSLLNMYSSCMDLSSAESVFCDMNERDNVA 453

Query: 184 WNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVI 243
           WNS+ILG  KNDK+++G+ LF  M+  G  PT +++ M+L+ACSR+ ++  G++IHARVI
Sbjct: 454 WNSLILGYLKNDKIEKGVYLFIEMMWVGFTPTVYTFCMILSACSRLKDYFSGRLIHARVI 513

Query: 244 ISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVD 303
           + N   DL L+NAL+DMY    DTQTA+ +F+R+E  DLVSWNSMI+GY EN +GEKA++
Sbjct: 514 VGNVSPDLHLQNALVDMYCNAGDTQTAYMIFSRMEKWDLVSWNSMISGYFENEDGEKAMN 573

Query: 304 MFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMY 363
           +FV L+ +   KPD+YT+A IISAT A P  +YGKPLH  VIK G+  SVFVG+TL++MY
Sbjct: 574 LFVQLKALCFPKPDDYTYAGIISATGAFPCFSYGKPLHGQVIKAGFVRSVFVGSTLVSMY 633

Query: 364 FKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALS 423
           FKN + E+  +VF  I  KD +LWTEMI G+S+M DG  AI+ F +M  E  + D++ LS
Sbjct: 634 FKNQETEAALRVFCSIPGKDAILWTEMITGYSKMADGMGAIRCFSEMHHEVHEIDDYVLS 693

Query: 424 GALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP 483
           G LS CA LAIL+QGE+IH  A K G+ VEMSV GSL+DMYAKNG+L AA  +FSQV HP
Sbjct: 694 GVLSVCAYLAILRQGEIIHCYAYKLGYDVEMSVSGSLIDMYAKNGNLEAAYLVFSQVSHP 753

Query: 484 DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILW 543
           DLKCWN++LGG+SH+GM ++A  +FE I++ GL PD++TFLSLLSACSHS LVE+GK+LW
Sbjct: 754 DLKCWNSMLGGFSHHGMVDDALKLFEEIIKQGLVPDQVTFLSLLSACSHSRLVEQGKLLW 813

Query: 544 NQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRN 603
           N M    L+PG KHYSCMV+LLSRA LL+EAE +I +SPY E  +ELWRTLLS CV  +N
Sbjct: 814 NYMSSIGLVPGPKHYSCMVTLLSRAALLEEAEEIINKSPYVEDNVELWRTLLSACVINKN 873

Query: 604 SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIE 663
            ++ ++AAE+VLR + EDG T ILLSNLYAA GRWD VA++RR MKG ++ KEPGLSWIE
Sbjct: 874 LKVGVRAAEEVLRFNAEDGPTLILLSNLYAAAGRWDEVAEIRRNMKGLIMEKEPGLSWIE 933

Query: 664 AKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDE 702
           AKN++HVFSSGDQSHPK+D  QAELHRL+GNM +   D+
Sbjct: 934 AKNDIHVFSSGDQSHPKVDQVQAELHRLKGNMIRTENDD 972

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297819724|ref|XP_002877745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297323583|gb|EFH54004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  828 bits (2138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/694 (58%), Positives = 523/694 (75%), Gaps = 6/694 (0%)

Query: 3   PTHENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCG 62
           P +E +  ++  L + C SIT+LKRA Q+HA++LT       ++SPY  NN++SMY RCG
Sbjct: 2   PLNE-IASSVVELTRKCVSITALKRACQLHAIILTAGAGSA-SESPYKNNNLISMYVRCG 59

Query: 63  SIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLA 122
           S+  AR++FD++P+R++VSYNAL +AYSR+ D+A   F LI+QM  E L+PN  TFTSL 
Sbjct: 60  SLEQARKLFDKMPERNVVSYNALYSAYSRNLDYASYAFSLINQMASESLKPNSSTFTSLV 119

Query: 123 QAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAV 182
           Q  ++LED LMGSLLH+Q+IK G S++  VQTS+LGMYS+CGD ESA+RIF  +   DAV
Sbjct: 120 QVCTVLEDVLMGSLLHSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAV 179

Query: 183 AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNF--VCGKVIHA 240
           AWN++I+G F+NDK+++GL LF +M+ SGV+PTQF+YSM+LNACS++G++    GK+IHA
Sbjct: 180 AWNTMIVGIFRNDKIEDGLMLFRSMLMSGVDPTQFTYSMVLNACSKLGSYRYSVGKLIHA 239

Query: 241 RVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEK 300
           R+I+S+   DLP+ENALLDMY  C D + AF VF +I NP+LVSWNS+I+G  ENG GE+
Sbjct: 240 RMIVSDILADLPVENALLDMYCSCGDMKEAFYVFGKIHNPNLVSWNSIISGCSENGFGEQ 299

Query: 301 AVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLL 360
           A+ M+  L R+S  +PDEYTF+A I AT+      +GK LH  V K GY+ SVFVGTTLL
Sbjct: 300 AILMYRRLLRISTPRPDEYTFSAAIPATAEPEKFIHGKLLHGQVTKLGYERSVFVGTTLL 359

Query: 361 NMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNF 420
           +MYFKNG+AES QKVF +I E+D+VLWTEMI+G SR+G+ ECA++LF +M RE  + D F
Sbjct: 360 SMYFKNGEAESAQKVFGVITERDVVLWTEMIVGESRVGNSECAVQLFIEMYREKNRTDGF 419

Query: 421 ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQV 480
           +LS  L AC+D+A+L+QG++ HS A KTG    MSV G+LVDMY KNG    AESIFS V
Sbjct: 420 SLSSVLGACSDMAMLRQGQVFHSLAIKTGFDNVMSVSGALVDMYGKNGKYETAESIFSLV 479

Query: 481 LHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGK 540
            +PDLKCWN++LG YS +GM E+A   FE ILE+G  PD +T+LSLL+ACSH G  + GK
Sbjct: 480 SNPDLKCWNSMLGAYSQHGMVEKAQSFFEQILENGFTPDAVTYLSLLAACSHKGSTQEGK 539

Query: 541 ILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA 600
            LWNQMKE  +  G KHYSCMVSL+S+AGLL EA  LI +SP    + ELWRTLLS CV 
Sbjct: 540 FLWNQMKEQGITAGFKHYSCMVSLVSKAGLLGEALELIKQSPPENNQAELWRTLLSACVN 599

Query: 601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLS 660
            RN ++ + AA+Q+L+LDPED  THILLSNLYA  GRW  VA+MRRK++G    K+PGLS
Sbjct: 600 ARNLQIGLYAADQILKLDPEDTATHILLSNLYAVNGRWKDVAEMRRKIRGLASAKDPGLS 659

Query: 661 WIEA-KNNVHVFSSGDQSHPK-IDDAQAELHRLR 692
           WIE   NN HVFSSGDQS+P+ I  AQ ELHRL+
Sbjct: 660 WIEVNNNNTHVFSSGDQSNPEVITQAQDELHRLK 693

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229753|ref|NP_190611.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75202753|sp|Q9SCT2.1|PP277_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g50420 gi|6561982|emb|CAB62471.1| putative protein [Arabidopsis thaliana] gi|332645144|gb|AEE78665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  823 bits (2126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/707 (56%), Positives = 522/707 (73%), Gaps = 6/707 (0%)

Query: 3   PTHENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCG 62
           P +E +  ++  L + C SIT LKRARQIHALVLT        +SPY  NN++SMY RCG
Sbjct: 89  PLNE-IASSVVELTRKCVSITVLKRARQIHALVLTAG-AGAATESPYANNNLISMYVRCG 146

Query: 63  SIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLA 122
           S+  AR+VFD++P R++VSYNAL +AYSR+ D A   F L   M FE ++PN  TFTSL 
Sbjct: 147 SLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTFTSLV 206

Query: 123 QAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAV 182
           Q  ++LED LMGS L++Q+IK G S++  VQTS+LGMYS+CGD ESA+RIF  + ++DAV
Sbjct: 207 QVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAV 266

Query: 183 AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARV 242
           AWN++I+G+ KNDK+++GL  F  M+ SGV+PTQF+YS++LN CS++G++  GK+IHAR+
Sbjct: 267 AWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARI 326

Query: 243 IISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAV 302
           I+S++  DLPL+NALLDMY  C D + AF VF RI NP+LVSWNS+I+G  ENG GE+A+
Sbjct: 327 IVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAM 386

Query: 303 DMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNM 362
            M+  L RMS  +PDEYTF+A ISAT+      +GK LH  V K GY+ SVFVGTTLL+M
Sbjct: 387 LMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSM 446

Query: 363 YFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFAL 422
           YFKN +AES QKVF ++ E+D+VLWTEMI+GHSR+G+ E A++ F +M RE  + D F+L
Sbjct: 447 YFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFSL 506

Query: 423 SGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH 482
           S  + AC+D+A+L+QGE+ H  A +TG    MSVCG+LVDMY KNG    AE+IFS   +
Sbjct: 507 SSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAETIFSLASN 566

Query: 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKIL 542
           PDLKCWN++LG YS +GM E+A   FE ILE+G  PD +T+LSLL+ACSH G   +GK L
Sbjct: 567 PDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLSLLAACSHRGSTLQGKFL 626

Query: 543 WNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKR 602
           WNQMKE  +  G KHYSCMV+L+S+AGL+DEA  LI +SP    + ELWRTLLS CV  R
Sbjct: 627 WNQMKEQGIKAGFKHYSCMVNLVSKAGLVDEALELIEQSPPGNNQAELWRTLLSACVNTR 686

Query: 603 NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWI 662
           N ++ + AAEQ+L+LDPED  THILLSNLYA  GRW+ VA+MRRK++G    K+PGLSWI
Sbjct: 687 NLQIGLYAAEQILKLDPEDTATHILLSNLYAVNGRWEDVAEMRRKIRGLASSKDPGLSWI 746

Query: 663 EA-KNNVHVFSSGDQSHPK-IDDAQAELHRLRGNMRKLVTDEFGKEV 707
           E   NN  VFSSGDQS+P+ +  AQ EL+RL+ NM  L    F K V
Sbjct: 747 EVNNNNTQVFSSGDQSNPEVVSQAQDELNRLKRNM--LCKSSFNKLV 791

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460648|ref|XP_004148057.1| PREDICTED: pentatricopeptide repeat-containing protein At3g50420-like [Cucumis sativus]

 Score =  776 bits (2003), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 378/694 (54%), Positives = 515/694 (74%), Gaps = 4/694 (0%)

Query: 11  NIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQV 70
           +++ L+Q C S+TSLK ARQ+HAL+LT+     ++ SPY+ NN+LSMY RCG+I ++++V
Sbjct: 6   SLSALVQKCISVTSLKAARQLHALILTSIATA-SSLSPYVCNNILSMYARCGAIWESQKV 64

Query: 71  FDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLED 130
           F+++P+R+LVS+NALIAAYSR H HA L F L+ QME E L+PN  T TSL QA S  ED
Sbjct: 65  FEKMPQRNLVSFNALIAAYSRSHGHAPLAFNLLSQMELEFLKPNSFTITSLLQAASFTED 124

Query: 131 QLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILG 190
               SL+HAQV+K G   D  VQT+L+G YS+C D ESA ++F    DKD V WN++I G
Sbjct: 125 PFWSSLIHAQVVKCGFVHDVRVQTALIGTYSHCLDLESAGKVFRWTIDKDVVTWNTMIFG 184

Query: 191 NFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVD 250
           N K+DK+ E L LF  M+G G+ PTQF+Y+M+LN C R G+++ G++IH R+I SN  +D
Sbjct: 185 NLKHDKLNEALRLFNQMLGIGLIPTQFTYAMILNICCRNGDYLFGRLIHGRIITSNAIID 244

Query: 251 LPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRR 310
             L+N LLD+Y  C D  TAF +F R ENPDLV+WN++I+G  EN   EKA+ +F  L++
Sbjct: 245 RTLQNVLLDLYCNCGDIHTAFCIFNRNENPDLVAWNTIISGCSENEEDEKAMKLFQQLKK 304

Query: 311 MSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAE 370
            SL KPD+YT+AA+IS    L +   G    A VIK G++ SVF+ + +++M F+NG+++
Sbjct: 305 SSLTKPDDYTYAAVISTIDNLLS---GMSFIAQVIKDGFEGSVFISSVIVSMLFRNGESQ 361

Query: 371 SPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACA 430
           +  +VF+ +A KD+VLWTEMI G+SR+G+GE AIK F +M + G + D+F+LS ALS+CA
Sbjct: 362 AAARVFVTVAVKDVVLWTEMISGYSRIGEGEKAIKCFHQMHQNGHELDSFSLSLALSSCA 421

Query: 431 DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNA 490
           DLA LKQGE+ HS A KTG   E+ V GSL++MYAKNGDL +A+ IFSQV  PDLKCWN+
Sbjct: 422 DLATLKQGEIFHSLAIKTGSEAEIYVLGSLINMYAKNGDLGSAQLIFSQVPCPDLKCWNS 481

Query: 491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHS 550
           +LGGYSH+G  E+A  +F  +  +G++PD++TFLSLLSAC+HS  VE G+ LWN MKE +
Sbjct: 482 MLGGYSHHGNMEQALNLFFNLQNNGVKPDQVTFLSLLSACNHSNSVEIGQFLWNYMKECN 541

Query: 551 LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQA 610
           +IP  KHYSCMVSLLS AG +DEAE +I +SP++    ELWRTLLS+CV K+N R+ + A
Sbjct: 542 IIPNSKHYSCMVSLLSGAGFMDEAEEMITKSPFANNDPELWRTLLSSCVVKKNLRVGVNA 601

Query: 611 AEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHV 670
           A+QVLR+DPED   HILLSNLYAA G+WD V +MRR+++  M+GK+PG+SWIEAK+ +  
Sbjct: 602 AKQVLRIDPEDSAAHILLSNLYAAAGKWDGVVEMRRRIREKMVGKDPGVSWIEAKSKIQS 661

Query: 671 FSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEFG 704
           FSSG QSHP++D+A   L +LRGNM + + +  G
Sbjct: 662 FSSGLQSHPEVDEALTTLLKLRGNMSEEMDESGG 695

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224084249|ref|XP_002307242.1| predicted protein [Populus trichocarpa] gi|222856691|gb|EEE94238.1| predicted protein [Populus trichocarpa]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 369/560 (65%), Positives = 449/560 (80%)

Query: 106 MEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGD 165
           M  + L PNG TF+S  QA  LLED  MGSL+H Q +K+G   D  VQTSLLGMYSNCGD
Sbjct: 1   MGTQGLTPNGSTFSSSLQACCLLEDWFMGSLIHGQSVKHGFFNDVFVQTSLLGMYSNCGD 60

Query: 166 FESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNA 225
            ESA ++FG +  KDAV WNS+I GN KN+K++EG+ LFG MV  G+ PT+F+YSM+LNA
Sbjct: 61  LESANKVFGCVVQKDAVLWNSMIFGNLKNEKLEEGVLLFGKMVRHGIVPTEFTYSMILNA 120

Query: 226 CSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSW 285
           C ++G+   G+VIHA+VI+ N   DLPL+NALLDMY  C DT+T F+VF +IENPDLVSW
Sbjct: 121 CGKLGDCRWGQVIHAQVIVLNVLADLPLQNALLDMYCSCGDTETGFNVFNKIENPDLVSW 180

Query: 286 NSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVI 345
           NSMI+GY ENG G  A+++F+ L  + L KPDEYTFAA+ISATSA  A+ YGKPLHA V+
Sbjct: 181 NSMISGYAENGEGADAMNLFLQLVGVFLPKPDEYTFAAVISATSAFSATCYGKPLHAQVL 240

Query: 346 KTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIK 405
           K G + SVF+GTTLL+MY KNGD ES ++VF +I  KD+VLWTEMI+GHSR+G GE AIK
Sbjct: 241 KVGSERSVFIGTTLLSMYLKNGDIESAEQVFNMIEGKDVVLWTEMIMGHSRLGGGESAIK 300

Query: 406 LFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYA 465
           LF  MC EG K D+FALSGALSACADLA L QGEMIH+Q  K G   E+SVCGSLV MYA
Sbjct: 301 LFSMMCHEGYKIDSFALSGALSACADLATLNQGEMIHTQTVKRGCDAEISVCGSLVHMYA 360

Query: 466 KNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLS 525
           KNGDL AA SIFSQV +PDLKCWN++LGGYS +GMAEEA ++F  IL +G RPD++TFLS
Sbjct: 361 KNGDLHAARSIFSQVSNPDLKCWNSMLGGYSQHGMAEEAMIIFAKILVNGQRPDQVTFLS 420

Query: 526 LLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSE 585
           LLSACSHSGLVE GK+LW+ +K++ +IPG KHYSCMVSLLSRAGLLDEAE LI +S YS+
Sbjct: 421 LLSACSHSGLVEEGKLLWSHIKKNDVIPGPKHYSCMVSLLSRAGLLDEAEELIIKSTYSK 480

Query: 586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMR 645
             +ELWRTLLS+CV KRN ++ ++AAE++L+L+PED  THILLSNLYAA GRW+ VA+MR
Sbjct: 481 DHLELWRTLLSSCVNKRNLKIGVRAAEEILQLEPEDSATHILLSNLYAAAGRWEAVAEMR 540

Query: 646 RKMKGSMLGKEPGLSWIEAK 665
           RK+ G M+ K+PGLSWIE K
Sbjct: 541 RKISGLMIEKDPGLSWIEGK 560

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502762|ref|XP_004161735.1| PREDICTED: pentatricopeptide repeat-containing protein At3g50420-like [Cucumis sativus]

 Score =  715 bits (1846), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 358/691 (51%), Positives = 486/691 (70%), Gaps = 40/691 (5%)

Query: 14  TLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDE 73
           +L+Q C S+TSLK ARQ+HAL+LT+     ++ SPY+ NN+LSMY RCG+I ++++VF++
Sbjct: 39  SLVQKCISVTSLKAARQLHALILTSIATA-SSLSPYVCNNILSMYARCGAIWESQKVFEK 97

Query: 74  IPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLM 133
           +P+R+LVS+NALIAAYSR H HA L F L+ QME E L+PN  T TSL QA S  ED   
Sbjct: 98  MPQRNLVSFNALIAAYSRSHGHAPLAFNLLSQMELEFLKPNSFTITSLLQAASFTEDPFW 157

Query: 134 GSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFK 193
            SL+HAQV+K G   D  VQT+L+G YS+C D ESA ++F    DKD V WN++I GN K
Sbjct: 158 SSLIHAQVVKCGFVHDVRVQTALIGTYSHCLDLESAGKVFRWTIDKDVVTWNTMIFGNLK 217

Query: 194 NDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPL 253
           +DK+ E L LF  M+G G+ PTQF+Y+M+LN C R G+++ G++IH R+I SN  +D  L
Sbjct: 218 HDKLNEALRLFNQMLGIGLIPTQFTYAMILNICCRNGDYLFGRLIHGRIITSNAIIDRTL 277

Query: 254 ENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSL 313
           +N LLD+Y  C D  TAF +F R ENPDLV+WN++I+G  EN   EKA+ +F  L++ SL
Sbjct: 278 QNVLLDLYCNCGDIHTAFCIFNRNENPDLVAWNTIISGCSENEEDEKAMKLFQQLKKSSL 337

Query: 314 LKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQ 373
            KPD+YT+AA+IS    L +   G    A VIK G++ SVF+ + +++M F+NG++++  
Sbjct: 338 TKPDDYTYAAVISTIDNLLS---GMSFIAQVIKDGFEGSVFISSVIVSMLFRNGESQAAA 394

Query: 374 KVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLA 433
           +VF+ +A KD+VLWTEMI G+SR+G+GE AIK F +M + G + D+F+LS ALS+CADLA
Sbjct: 395 RVFVTVAVKDVVLWTEMISGYSRIGEGEKAIKCFHQMHQNGHELDSFSLSLALSSCADLA 454

Query: 434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLG 493
            LKQGE+ HS A KTG   E+ V GSL++MYAKNGDL +A+ IFSQV  PDLKCWN++LG
Sbjct: 455 TLKQGEIFHSLAIKTGSEAEIYVLGSLINMYAKNGDLGSAQLIFSQVPCPDLKCWNSMLG 514

Query: 494 GYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP 553
           GYSH+G  E+A  +F  +  +G++PD++TFLSLLSAC+HS  VE G+ LWN MKE ++IP
Sbjct: 515 GYSHHGNMEQALNLFFNLQNNGVKPDQVTFLSLLSACNHSNSVEIGQFLWNYMKECNIIP 574

Query: 554 GHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQ 613
             KHYSCMVSLLS AG+                                     + AA+Q
Sbjct: 575 NSKHYSCMVSLLSGAGV------------------------------------GVNAAKQ 598

Query: 614 VLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSS 673
           VLR+DPED   HILLSNLYAA G+WD V +MRR+++  M+GK+PG+SWIEAK+ +  FSS
Sbjct: 599 VLRIDPEDSAAHILLSNLYAAAGKWDGVVEMRRRIREKMVGKDPGVSWIEAKSKIQSFSS 658

Query: 674 GDQSHPKIDDAQAELHRLRGNMRKLVTDEFG 704
           G QSHP++D+A   L +LRGNM + + +  G
Sbjct: 659 GLQSHPEVDEALTTLLKLRGNMSEEMDESGG 689

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359359183|gb|AEV41088.1| putative pentatricopeptide [Oryza minuta]

 Score =  635 bits (1639), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 318/676 (47%), Positives = 445/676 (65%), Gaps = 4/676 (0%)

Query: 31  IHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYS 90
           IHAL++ ++       + ++ N +LS+Y R  +I DA  +    P  S+VSYN +++A S
Sbjct: 78  IHALLVVSSTPSAPTPTTFLANQLLSLYARLSAIPDALALLRSTPHPSVVSYNTVLSALS 137

Query: 91  RDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDT 150
           R   HA   FRL  ++    LRP   +  +L +A   L D+  G+  H+Q +  G     
Sbjct: 138 RAPRHAPEGFRLFRRLHASGLRPTAPSLCALLRAAGELRDRRAGAAAHSQAVTLGFLASD 197

Query: 151 CVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGS 210
            V T+LL MYS CG    A ++F  +  +D VAWN ++  N +   +   L  F  MV  
Sbjct: 198 IVPTALLQMYSQCGAPRDANQVFDEMATRDGVAWNCVMHCNVRYGYLDRALGQFCRMVRG 257

Query: 211 GVNPTQFSYSMLLNACSRMGNFVCGKVIHARVI-ISNTQVDLPLENALLDMYSKCSDTQT 269
           G+ PT+ + S +L+ C R G+   G+ +H  V+ +     D+PL+NALLDMYS C D +T
Sbjct: 258 GLPPTESTLSSVLSGCGRAGDCRRGRALHGWVVKLEELDPDMPLQNALLDMYSSCGDLET 317

Query: 270 AFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSL---LKPDEYTFAAIIS 326
           A  VF RIE PDLVSWN++IAG+   G+G  A+D FV L+ +     + PDEYT AA++S
Sbjct: 318 ALRVFERIETPDLVSWNTLIAGFSGVGDGCSAMDAFVQLKAVQFDEWVVPDEYTLAAVVS 377

Query: 327 ATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVL 386
           A + LPA   GKPLHA VIK G +SSVFVG TLLNMYF N +  S + +F  + +KD+++
Sbjct: 378 ACATLPAMFGGKPLHAEVIKAGLESSVFVGNTLLNMYFTNEEPGSARILFHSLNQKDVIM 437

Query: 387 WTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAE 446
           WTEM+ GHS +G+GE A+K F  M +EG K D+F+LS AL++ A+LA LKQGEM+H++  
Sbjct: 438 WTEMVAGHSLLGEGEMALKYFVSMLQEGYKVDSFSLSSALNSTAELAGLKQGEMLHAEVV 497

Query: 447 KTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFM 506
           K+G+   +   GSLVDMYAKNG L  A  +FS +  PDLKCWN+++GGY ++G +E AF 
Sbjct: 498 KSGYEGNICASGSLVDMYAKNGALPGAYLVFSNIQKPDLKCWNSIIGGYGNHGNSEMAFK 557

Query: 507 VFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS 566
           +F  ++  GL+PD +T++SLLSACSH GLVE+GK  W  M    ++PG KHY+ MVSLLS
Sbjct: 558 LFGEMIRDGLQPDHVTYISLLSACSHCGLVEKGKFYWFCMMTDGIVPGFKHYTSMVSLLS 617

Query: 567 RAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI 626
           RAGLL+EA +L+ + P+++   ELWR LLS+C+  RN  + + AAEQ L  DP+D +TH+
Sbjct: 618 RAGLLEEAVDLMMKCPFTKKCPELWRILLSSCIPFRNLSIGVHAAEQALEQDPDDISTHV 677

Query: 627 LLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQA 686
           LLSNLYA+ G+WD VA++R++++G M+ KEPG SWIE KN VHVFS+ D+ H  IDD Q 
Sbjct: 678 LLSNLYASVGKWDLVAEIRKRIRGLMVEKEPGQSWIEMKNMVHVFSADDECHSHIDDCQG 737

Query: 687 ELHRLRGNMRKLVTDE 702
           EL RL+GNM  L T E
Sbjct: 738 ELLRLKGNMELLDTCE 753

Source: Oryza minuta

Species: Oryza minuta

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115461254|ref|NP_001054227.1| Os04g0672700 [Oryza sativa Japonica Group] gi|70663948|emb|CAE54552.2| OSJNBb0004A17.12 [Oryza sativa Japonica Group] gi|113565798|dbj|BAF16141.1| Os04g0672700 [Oryza sativa Japonica Group] gi|125592028|gb|EAZ32378.1| hypothetical protein OsJ_16588 [Oryza sativa Japonica Group]

 Score =  622 bits (1604), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 315/675 (46%), Positives = 442/675 (65%), Gaps = 4/675 (0%)

Query: 32  HALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSR 91
           HAL++ ++     A + ++ N +LS+Y R  ++ DA  +    P+ S+VSYN +++A SR
Sbjct: 38  HALLVVSSTPSSPALTTFLANQLLSLYARLSAVPDALALLRSTPRPSVVSYNTVLSALSR 97

Query: 92  DHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTC 151
              HA    RL  ++    LRP   +  +L +    L D+  G+  H+Q    G      
Sbjct: 98  APRHAPEGLRLFRRLHASGLRPTAPSLCALLRTAGELRDRRAGAAAHSQAATLGFLASDI 157

Query: 152 VQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSG 211
           V T+LL MYS CG    A ++F  +  +D VAWN ++  N +   +   L  F  MV  G
Sbjct: 158 VPTALLQMYSQCGAPRDANQVFDEMATRDGVAWNCVMHCNVRYGYLDRALGQFCRMVRGG 217

Query: 212 VNPTQFSYSMLLNACSRMGNFVCGKVIHARVI-ISNTQVDLPLENALLDMYSKCSDTQTA 270
           + PT+ + S +L+ C R G+ + G+V+H  V+ +     D+PL+NALLDMYS C D  TA
Sbjct: 218 LPPTESTLSSVLSGCGRAGDCLRGRVLHGWVVKLEELDPDMPLQNALLDMYSSCGDLDTA 277

Query: 271 FSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSL---LKPDEYTFAAIISA 327
             VF RIE PDLVSWN++IAG+   G+G  AV  FV L+ +     + PDEYT AA++SA
Sbjct: 278 LRVFERIETPDLVSWNTLIAGFSGVGDGCSAVHAFVQLKAVQFDERVVPDEYTLAAVVSA 337

Query: 328 TSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLW 387
           ++ LPA   GKPLHA VIK G ++SVFVG TLLNMYF N D  S + +F  I ++D+++W
Sbjct: 338 SATLPAMFGGKPLHAEVIKAGLENSVFVGNTLLNMYFTNDDPHSARILFDSITQEDVIMW 397

Query: 388 TEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEK 447
           TEM+ GHS +G+GE A++ F  M +EG K D+F+LS AL++  +LA LKQGEM+H+Q  K
Sbjct: 398 TEMVAGHSSLGEGELALRYFVSMLQEGYKVDSFSLSSALNSTTELAGLKQGEMLHAQVVK 457

Query: 448 TGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMV 507
           +G+   +   GSLVDMYAKNG L  A  +F  +  PDLKCWN+++GGY ++G +E AF +
Sbjct: 458 SGYEGNICASGSLVDMYAKNGALPGAYLVFRNIQRPDLKCWNSIIGGYGNHGNSEMAFKL 517

Query: 508 FEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR 567
           F  ++  GL+PD +T++S+LSACSH GLVE+GK  W  M    ++PG KHY+ MVSLL R
Sbjct: 518 FGEMIRDGLQPDHVTYISILSACSHCGLVEKGKFYWFCMMTDGIVPGFKHYTSMVSLLGR 577

Query: 568 AGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL 627
           AGLLDEA +L+ +SP+++   ELWR LLS+C+  RN  + + AAEQ L  DP+D +THIL
Sbjct: 578 AGLLDEAVDLMMKSPFAKKCPELWRILLSSCITFRNLSIGVHAAEQALEQDPDDISTHIL 637

Query: 628 LSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAE 687
           LSNLYA+ G+WD VA++R++M+G M  KEPGLSW+E KN VHVFS+ D+ H  IDD  +E
Sbjct: 638 LSNLYASLGKWDFVAEIRKRMRGLMADKEPGLSWVEMKNVVHVFSADDECHSHIDDCHSE 697

Query: 688 LHRLRGNMRKLVTDE 702
           L RL+GNM  L T E
Sbjct: 698 LLRLKGNMELLDTCE 712

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	708
TAIR|locus:2098670	794	AT3G50420 [Arabidopsis thalian	0.990	0.882	0.568	2.1e-215
TAIR|locus:2119440	1064	AT4G13650 [Arabidopsis thalian	0.937	0.624	0.334	2.7e-107
TAIR|locus:2083961	768	AT3G53360 "AT3G53360" [Arabido	0.959	0.884	0.352	1.7e-105
TAIR|locus:2183931	822	AT5G13230 [Arabidopsis thalian	0.908	0.782	0.332	1.8e-103
TAIR|locus:2038603	868	AT2G27610 "AT2G27610" [Arabido	0.954	0.778	0.321	4.2e-102
TAIR|locus:2057630	727	AT2G33680 "AT2G33680" [Arabido	0.925	0.900	0.320	7.9e-101
TAIR|locus:2162207	830	CRR21 "chlororespiratory reduc	0.699	0.596	0.276	3.6e-51
TAIR|locus:2100392	706	AT3G47840 [Arabidopsis thalian	0.942	0.944	0.327	4.5e-98
TAIR|locus:2196583	866	ECB2 "EARLY CHLOROPLAST BIOGEN	0.937	0.766	0.329	2e-97
TAIR|locus:2064828	860	AT2G40720 [Arabidopsis thalian	0.937	0.772	0.341	5.2e-97

TAIR|locus:2098670 AT3G50420 [Arabidopsis thaliana (taxid:3702)]

 Score = 2062 (730.9 bits), Expect = 2.1e-215, Sum P(2) = 2.1e-215
 Identities = 402/707 (56%), Positives = 522/707 (73%)

Query:     3 PTHENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCG 62
             P +E +  ++  L + C SIT LKRARQIHALVLT        +SPY  NN++SMY RCG
Sbjct:    89 PLNE-IASSVVELTRKCVSITVLKRARQIHALVLTAG-AGAATESPYANNNLISMYVRCG 146

Query:    63 SIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLA 122
             S+  AR+VFD++P R++VSYNAL +AYSR+ D A   F L   M FE ++PN  TFTSL 
Sbjct:   147 SLEQARKVFDKMPHRNVVSYNALYSAYSRNPDFASYAFPLTTHMAFEYVKPNSSTFTSLV 206

Query:   123 QAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAV 182
             Q  ++LED LMGS L++Q+IK G S++  VQTS+LGMYS+CGD ESA+RIF  + ++DAV
Sbjct:   207 QVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDLESARRIFDCVNNRDAV 266

Query:   183 AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARV 242
             AWN++I+G+ KNDK+++GL  F  M+ SGV+PTQF+YS++LN CS++G++  GK+IHAR+
Sbjct:   267 AWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSYSLGKLIHARI 326

Query:   243 IISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAV 302
             I+S++  DLPL+NALLDMY  C D + AF VF RI NP+LVSWNS+I+G  ENG GE+A+
Sbjct:   327 IVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISGCSENGFGEQAM 386

Query:   303 DMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNM 362
              M+  L RMS  +PDEYTF+A ISAT+      +GK LH  V K GY+ SVFVGTTLL+M
Sbjct:   387 LMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVTKLGYERSVFVGTTLLSM 446

Query:   363 YFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFAL 422
             YFKN +AES QKVF ++ E+D+VLWTEMI+GHSR+G+ E A++ F +M RE  + D F+L
Sbjct:   447 YFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIEMYREKNRSDGFSL 506

Query:   423 SGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH 482
             S  + AC+D+A+L+QGE+ H  A +TG    MSVCG+LVDMY KNG    AE+IFS   +
Sbjct:   507 SSVIGACSDMAMLRQGEVFHCLAIRTGFDCVMSVCGALVDMYGKNGKYETAETIFSLASN 566

Query:   483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKIL 542
             PDLKCWN++LG YS +GM E+A   FE ILE+G  PD +T+LSLL+ACSH G   +GK L
Sbjct:   567 PDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVTYLSLLAACSHRGSTLQGKFL 626

Query:   543 WNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKR 602
             WNQMKE  +  G KHYSCMV+L+S+AGL+DEA  LI +SP    + ELWRTLLS CV  R
Sbjct:   627 WNQMKEQGIKAGFKHYSCMVNLVSKAGLVDEALELIEQSPPGNNQAELWRTLLSACVNTR 686

Query:   603 NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWI 662
             N ++ + AAEQ+L+LDPED  THILLSNLYA  GRW+ VA+MRRK++G    K+PGLSWI
Sbjct:   687 NLQIGLYAAEQILKLDPEDTATHILLSNLYAVNGRWEDVAEMRRKIRGLASSKDPGLSWI 746

Query:   663 EAKNN-VHVFSSGDQSHPKI-DDAQAELHRLRGNMRKLVTDEFGKEV 707
             E  NN   VFSSGDQS+P++   AQ EL+RL+ NM  L    F K V
Sbjct:   747 EVNNNNTQVFSSGDQSNPEVVSQAQDELNRLKRNM--LCKSSFNKLV 791

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)]

 Score = 1061 (378.5 bits), Expect = 2.7e-107, P = 2.7e-107
 Identities = 225/672 (33%), Positives = 360/672 (53%)

Query:    13 ATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFD 72
             ++++  C  I SL+   Q+H LVL        +   Y+ N ++S+Y   G++  A  +F 
Sbjct:   292 SSVLSACKKIESLEIGEQLHGLVLKLGF----SSDTYVCNALVSLYFHLGNLISAEHIFS 347

Query:    73 EIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQL 132
              + +R  V+YN LI   S+   +      L  +M  + L P+  T  SL  A S      
Sbjct:   348 NMSQRDAVTYNTLINGLSQC-GYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLF 406

Query:   133 MGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNF 192
              G  LHA   K G + +  ++ +LL +Y+ C D E+A   F     ++ V WN +++   
Sbjct:   407 RGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYG 466

Query:   193 KNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLP 252
               D ++    +F  M    + P Q++Y  +L  C R+G+   G+ IH+++I +N Q++  
Sbjct:   467 LLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNAY 526

Query:   253 LENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMS 312
             + + L+DMY+K     TA+ +  R    D+VSW +MIAGY +    +KA+  F  +    
Sbjct:   527 VCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRG 586

Query:   313 LLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESP 372
             + + DE      +SA + L A   G+ +HA    +G+ S +     L+ +Y + G  E  
Sbjct:   587 I-RSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSRCGKIEES 645

Query:   373 QKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADL 432
                F      D + W  ++ G  + G+ E A+++F +M REG+  +NF    A+ A ++ 
Sbjct:   646 YLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFVRMNREGIDNNNFTFGSAVKAASET 705

Query:   433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALL 492
             A +KQG+ +H+   KTG+  E  VC +L+ MYAK G +  AE  F +V   +   WNA++
Sbjct:   706 ANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDAEKQFLEVSTKNEVSWNAII 765

Query:   493 GGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMK-EHSL 551
               YS +G   EA   F+ ++   +RP+ +T + +LSACSH GLV++G   +  M  E+ L
Sbjct:   766 NAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHIGLVDKGIAYFESMNSEYGL 825

Query:   552 IPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAA 611
              P  +HY C+V +L+RAGLL  A+  I E P     + +WRTLLS CV  +N  +   AA
Sbjct:   826 SPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDAL-VWRTLLSACVVHKNMEIGEFAA 884

Query:   612 EQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVF 671
               +L L+PED  T++LLSNLYA + +WD     R+KMK   + KEPG SWIE KN++H F
Sbjct:   885 HHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGVKKEPGQSWIEVKNSIHSF 944

Query:   672 SSGDQSHPKIDD 683
               GDQ+HP  D+
Sbjct:   945 YVGDQNHPLADE 956

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)]

 Score = 1044 (372.6 bits), Expect = 1.7e-105, P = 1.7e-105
 Identities = 243/689 (35%), Positives = 371/689 (53%)

Query:    10 RNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQ 69
             R   +LI  C+S  SL + R+IH  +L +N          + N++LSMYG+CGS+RDAR+
Sbjct:    68 RTYISLICACSSSRSLAQGRKIHDHILNSNC----KYDTILNNHILSMYGKCGSLRDARE 123

Query:    70 VFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLE 129
             VFD +P+R+LVSY ++I  YS++   A    RL  +M  E L P+   F S+ +A +   
Sbjct:   124 VFDFMPERNLVSYTSVITGYSQNGQGAE-AIRLYLKMLQEDLVPDQFAFGSIIKACASSS 182

Query:   130 DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIIL 189
             D  +G  LHAQVIK  SS     Q +L+ MY        A R+F  I  KD ++W+SII 
Sbjct:   183 DVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIA 242

Query:   190 GNFKNDKMKEGLSLFGAMVGSGV-NPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQ 248
             G  +     E LS    M+  GV +P ++ +   L ACS +     G  IH   I S   
Sbjct:   243 GFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELA 302

Query:   249 VDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVAL 308
              +     +L DMY++C    +A  VF +IE PD  SWN +IAG   NG  ++AV +F  +
Sbjct:   303 GNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQM 362

Query:   309 RRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGD 368
             R    + PD  +  +++ A +   A + G  +H+ +IK G+ + + V  +LL MY    D
Sbjct:   363 RSSGFI-PDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSD 421

Query:   369 AESPQKVFMLIAEK-DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALS 427
                   +F       D V W  ++    +       ++LF  M     + D+  +   L 
Sbjct:   422 LYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNLLR 481

Query:   428 ACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKC 487
              C +++ LK G  +H  + KTG   E  +   L+DMYAK G L  A  IF  + + D+  
Sbjct:   482 GCVEISSLKLGSQVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVS 541

Query:   488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMK 547
             W+ L+ GY+  G  EEA ++F+ +   G+ P+ +TF+ +L+ACSH GLVE G  L+  M+
Sbjct:   542 WSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQ 601

Query:   548 -EHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRM 606
              EH + P  +H SC+V LL+RAG L+EAE  I E    E  + +W+TLLS C  + N  +
Sbjct:   602 TEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKL-EPDVVVWKTLLSACKTQGNVHL 660

Query:   607 VIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKN 666
               +AAE +L++DP + T H+LL +++A++G W+  A +R  MK   + K PG SWIE ++
Sbjct:   661 AQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIED 720

Query:   667 NVHVFSSGDQSHPKIDDAQAELHRLRGNM 695
              +H+F + D  HP+ DD    LH +   M
Sbjct:   721 KIHIFFAEDIFHPERDDIYTVLHNIWSQM 749

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2183931 AT5G13230 [Arabidopsis thaliana (taxid:3702)]

 Score = 1025 (365.9 bits), Expect = 1.8e-103, P = 1.8e-103
 Identities = 217/653 (33%), Positives = 368/653 (56%)

Query:    52 NNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECL 111
             N +L+ Y + G  +DA  +FDE+P+R+ VS+  L   Y+   D   L  RL    E   L
Sbjct:    88 NILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQGYACQ-DPIGLYSRL--HREGHEL 144

Query:   112 RPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKR 171
              P+   FTS  +    L+   +   LH+ ++K G   +  V  +L+  YS CG  +SA+ 
Sbjct:   145 NPH--VFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSNAFVGAALINAYSVCGSVDSART 202

Query:   172 IFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGN 231
             +F  I  KD V W  I+    +N   ++ L L   M  +G  P  +++   L A   +G 
Sbjct:   203 VFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRMAGFMPNNYTFDTALKASIGLGA 262

Query:   232 FVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAG 291
             F   K +H +++ +   +D  +   LL +Y++  D   AF VF  +   D+V W+ MIA 
Sbjct:   263 FDFAKGVHGQILKTCYVLDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIAR 322

Query:   292 YMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDS 351
             + +NG   +AVD+F+ +R  + + P+E+T ++I++  +    S  G+ LH LV+K G+D 
Sbjct:   323 FCQNGFCNEAVDLFIRMRE-AFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVVKVGFDL 381

Query:   352 SVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMC 411
              ++V   L+++Y K    ++  K+F  ++ K+ V W  +I+G+  +G+G  A  +F +  
Sbjct:   382 DIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSWNTVIVGYENLGEGGKAFSMFREAL 441

Query:   412 REGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLR 471
             R  +       S AL ACA LA +  G  +H  A KT +  +++V  SL+DMYAK GD++
Sbjct:   442 RNQVSVTEVTFSSALGACASLASMDLGVQVHGLAIKTNNAKKVAVSNSLIDMYAKCGDIK 501

Query:   472 AAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACS 531
              A+S+F+++   D+  WNAL+ GYS +G+  +A  + +++ +   +P+ +TFL +LS CS
Sbjct:   502 FAQSVFNEMETIDVASWNALISGYSTHGLGRQALRILDIMKDRDCKPNGLTFLGVLSGCS 561

Query:   532 HSGLVERGKILWNQM-KEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIEL 590
             ++GL+++G+  +  M ++H + P  +HY+CMV LL R+G LD+A  LI   PY E  + +
Sbjct:   562 NAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRLLGRSGQLDKAMKLIEGIPY-EPSVMI 620

Query:   591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG 650
             WR +LS  + + N     ++AE++L+++P+D  T++L+SN+YA   +W  VA +R+ MK 
Sbjct:   621 WRAMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKE 680

Query:   651 SMLGKEPGLSWIEAKNNVHVFSSGDQSHP--KIDDAQAELHRLRGNMRKLVTD 701
               + KEPGLSWIE + +VH FS G   HP  K+ +   E   ++      V D
Sbjct:   681 MGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPD 733

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 224/696 (32%), Positives = 389/696 (55%)

Query:     9 CRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDAR 68
             C   ++++++ A++      RQ+H   +    +        +  +++  Y +  + +D R
Sbjct:    93 CSIFSSVLKVSATLCDELFGRQLHCQCIKFGFL----DDVSVGTSLVDTYMKGSNFKDGR 148

Query:    69 QVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLL 128
             +VFDE+ +R++V++  LI+ Y+R+  +  +   L  +M+ E  +PN  TF   A A+ +L
Sbjct:   149 KVFDEMKERNVVTWTTLISGYARNSMNDEV-LTLFMRMQNEGTQPNSFTF---AAALGVL 204

Query:   129 EDQLMGSL---LHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWN 185
              ++ +G     +H  V+K G  +   V  SL+ +Y  CG+   A+ +F     K  V WN
Sbjct:   205 AEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWN 264

Query:   186 SIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIIS 245
             S+I G   N    E L +F +M  + V  ++ S++ ++  C+ +      + +H  V+  
Sbjct:   265 SMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKY 324

Query:   246 NTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENP-DLVSWNSMIAGYMENGNGEKAVDM 304
                 D  +  AL+  YSKC+    A  +F  I    ++VSW +MI+G+++N   E+AVD+
Sbjct:   325 GFLFDQNIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDL 384

Query:   305 FVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYF 364
             F  ++R  + +P+E+T++ I++A   +  S     +HA V+KT Y+ S  VGT LL+ Y 
Sbjct:   385 FSEMKRKGV-RPNEFTYSVILTALPVISPSE----VHAQVVKTNYERSSTVGTALLDAYV 439

Query:   365 KNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSG 424
             K G  E   KVF  I +KDIV W+ M+ G+++ G+ E AIK+F ++ + G+K + F  S 
Sbjct:   440 KLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSS 499

Query:   425 ALSACADL-AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP 483
              L+ CA   A + QG+  H  A K+     + V  +L+ MYAK G++ +AE +F +    
Sbjct:   500 ILNVCAATNASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREK 559

Query:   484 DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILW 543
             DL  WN+++ GY+ +G A +A  VF+ + +  ++ D +TF+ + +AC+H+GLVE G+  +
Sbjct:   560 DLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYF 619

Query:   544 NQM-KEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKR 602
             + M ++  + P  +H SCMV L SRAG L++A  +I   P +     +WRT+L+ C   +
Sbjct:   620 DIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMP-NPAGSTIWRTILAACRVHK 678

Query:   603 NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWI 662
              + +   AAE+++ + PED   ++LLSN+YA +G W   AK+R+ M    + KEPG SWI
Sbjct:   679 KTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWI 738

Query:   663 EAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKL 698
             E KN  + F +GD+SHP  D    +L  L   ++ L
Sbjct:   739 EVKNKTYSFLAGDRSHPLKDQIYMKLEDLSTRLKDL 774

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2057630 AT2G33680 "AT2G33680" [Arabidopsis thaliana (taxid:3702)]

 Score = 1000 (357.1 bits), Expect = 7.9e-101, P = 7.9e-101
 Identities = 214/668 (32%), Positives = 362/668 (54%)

Query:    24 SLKRARQIHALVLTTNHIPINAQSPYMYNNVL-SMYGRCGSIRDARQVFDEIPKRSLVSY 82
             +L   R +H  ++ T      A +   + NVL + Y +CG +  A  +F+ I  + +VS+
Sbjct:    29 NLVAGRAVHGQIIRTG-----ASTCIQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSW 83

Query:    83 NALIAAYSRDH--DHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQ 140
             N+LI  YS++     ++   +L  +M  + + PN  T   + +A S L+   +G   HA 
Sbjct:    84 NSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHAL 143

Query:   141 VIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEG 200
             V+K  S  D  V TSL+GMY   G  E   ++F  + +++   W++++ G     +++E 
Sbjct:   144 VVKMSSFGDIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEA 203

Query:   201 LSLFGAMVGSGV--NPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALL 258
             + +F   +      + + + ++ +L++ +       G+ IH   I +     + L NAL+
Sbjct:   204 IKVFNLFLREKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALV 263

Query:   259 DMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDE 318
              MYSKC     A  +F    + + ++W++M+ GY +NG   +AV +F  +    + KP E
Sbjct:   264 TMYSKCESLNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGI-KPSE 322

Query:   319 YTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFML 378
             YT   +++A S +     GK LH+ ++K G++  +F  T L++MY K G     +K F  
Sbjct:   323 YTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGCLADARKGFDC 382

Query:   379 IAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQG 438
             + E+D+ LWT +I G+ +  D E A+ L+ +M   G+  ++  ++  L AC+ LA L+ G
Sbjct:   383 LQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELG 442

Query:   439 EMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHY 498
             + +H    K G G+E+ +  +L  MY+K G L     +F +  + D+  WNA++ G SH 
Sbjct:   443 KQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHN 502

Query:   499 GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKH 557
             G  +EA  +FE +L  G+ PD++TF++++SACSH G VERG   +N M +   L P   H
Sbjct:   503 GQGDEALELFEEMLAEGMEPDDVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDH 562

Query:   558 YSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL 617
             Y+CMV LLSRAG L EA+  I ES   +  + LWR LLS C       + + A E+++ L
Sbjct:   563 YACMVDLLSRAGQLKEAKEFI-ESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMAL 621

Query:   618 DPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQS 677
                + +T++ LS +Y A GR   V ++ + M+ + + KE G SWIE KN  HVF  GD  
Sbjct:   622 GSRESSTYVQLSGIYTALGRMRDVERVWKHMRANGVSKEVGCSWIELKNQYHVFVVGDTM 681

Query:   678 HPKIDDAQ 685
             HP I++ +
Sbjct:   682 HPMIEETK 689

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2162207 CRR21 "chlororespiratory reduction 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 536 (193.7 bits), Expect = 3.6e-51, P = 3.6e-51
 Identities = 139/502 (27%), Positives = 253/502 (50%)

Query:   102 LIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGS--SEDTCVQTSLLGM 159
             L+ +M+F  LR     +  + Q      D   G  +HA+++K G   + +  ++T L+  
Sbjct:    57 LVTEMDFRNLRIGPEIYGEILQGCVYERDLSTGKQIHARILKNGDFYARNEYIETKLVIF 116

Query:   160 YSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSY 219
             Y+ C   E A+ +F  +  ++  +W +II    +    +  L  F  M+ + + P  F  
Sbjct:   117 YAKCDALEIAEVLFSKLRVRNVFSWAAIIGVKCRIGLCEGALMGFVEMLENEIFPDNFVV 176

Query:   220 SMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN 279
               +  AC  +     G+ +H  V+ S  +  + + ++L DMY KC     A  VF  I +
Sbjct:   177 PNVCKACGALKWSRFGRGVHGYVVKSGLEDCVFVASSLADMYGKCGVLDDASKVFDEIPD 236

Query:   280 PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKP 339
              + V+WN+++ GY++NG  E+A+ +F  +R+  + +P   T +  +SA++ +     GK 
Sbjct:   237 RNAVAWNALMVGYVQNGKNEEAIRLFSDMRKQGV-EPTRVTVSTCLSASANMGGVEEGKQ 295

Query:   340 LHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGD 399
              HA+ I  G +    +GT+LLN Y K G  E  + VF  + EKD+V W  +I G+ + G 
Sbjct:   296 SHAIAIVNGMELDNILGTSLLNFYCKVGLIEYAEMVFDRMFEKDVVTWNLIISGYVQQGL 355

Query:   400 GECAIKLFCKMCR-EGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCG 458
              E AI + C++ R E LK D   L+  +SA A    LK G+ +     +     ++ +  
Sbjct:   356 VEDAIYM-CQLMRLEKLKYDCVTLATLMSAAARTENLKLGKEVQCYCIRHSFESDIVLAS 414

Query:   459 SLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP 518
             +++DMYAK G +  A+ +F   +  DL  WN LL  Y+  G++ EA  +F  +   G+ P
Sbjct:   415 TVMDMYAKCGSIVDAKKVFDSTVEKDLILWNTLLAAYAESGLSGEALRLFYGMQLEGVPP 474

Query:   519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLI 578
             + IT+  ++ +   +G V+  K ++ QM+   +IP    ++ M++ + + G  +EA   +
Sbjct:   475 NVITWNLIILSLLRNGQVDEAKDMFLQMQSSGIIPNLISWTTMMNGMVQNGCSEEAILFL 534

Query:   579 AESPYSEIRIELWR-TL-LSTC 598
              +   S +R   +  T+ LS C
Sbjct:   535 RKMQESGLRPNAFSITVALSAC 556

GO:0009507 "chloroplast" evidence=ISM

GO:0016556 "mRNA modification" evidence=RCA;IMP

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2100392 AT3G47840 [Arabidopsis thaliana (taxid:3702)]

 Score = 974 (347.9 bits), Expect = 4.5e-98, P = 4.5e-98
 Identities = 222/677 (32%), Positives = 368/677 (54%)

Query:    10 RNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQ 69
             RN  T+ + C +  SL +      +V  +N + +    P   N+ L      G++R ARQ
Sbjct:     6 RNCGTIQRFCTTSISLLQKPVEENIVRISNQVMVKFD-P---NSHLRSLINAGNLRAARQ 61

Query:    70 VFDEIPKRSLVSYNALIAAY--SRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSL 127
             VFD++P   +VS+ ++I  Y  + + D A + F  +  ++   + P+    + + +A   
Sbjct:    62 VFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVD-HAVSPDTSVLSVVLKACGQ 120

Query:   128 LEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSI 187
               +   G  LHA  +K        V +SLL MY   G  + + R+F  +  ++AV W +I
Sbjct:   121 SSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAI 180

Query:   188 ILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNT 247
             I G     + KEGL+ F  M  S      +++++ L AC+ +     GK IH  VI+   
Sbjct:   181 ITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGF 240

Query:   248 QVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVA 307
                L + N+L  MY++C + Q    +F  +   D+VSW S+I  Y   G   KAV+ F+ 
Sbjct:   241 VTTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFIK 300

Query:   308 LRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNG 367
             +R  S + P+E TFA++ SA ++L    +G+ LH  V+  G + S+ V  +++ MY   G
Sbjct:   301 MRN-SQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLNDSLSVSNSMMKMYSTCG 359

Query:   368 DAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALS 427
             +  S   +F  +  +DI+ W+ +I G+ + G GE   K F  M + G K  +FAL+  LS
Sbjct:   360 NLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLLS 419

Query:   428 ACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKC 487
                ++A+++ G  +H+ A   G     +V  SL++MY+K G ++ A  IF +    D+  
Sbjct:   420 VSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRDDIVS 479

Query:   488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMK 547
               A++ GY+ +G ++EA  +FE  L+ G RPD +TF+S+L+AC+HSG ++ G   +N M+
Sbjct:   480 LTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGFHYFNMMQ 539

Query:   548 E-HSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRM 606
             E +++ P  +HY CMV LL RAG L +AE +I E  + +  + +W TLL  C AK +   
Sbjct:   540 ETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDV-VWTTLLIACKAKGDIER 598

Query:   607 VIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKN 666
               +AAE++L LDP   T  + L+N+Y++TG  +  A +R+ MK   + KEPG S I+ K+
Sbjct:   599 GRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIKIKD 658

Query:   667 NVHVFSSGDQSHPKIDD 683
              V  F SGD+ HP+ +D
Sbjct:   659 CVSAFVSGDRFHPQSED 675

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2196583 ECB2 "EARLY CHLOROPLAST BIOGENESIS2" [Arabidopsis thaliana (taxid:3702)]

 Score = 968 (345.8 bits), Expect = 2.0e-97, P = 2.0e-97
 Identities = 223/676 (32%), Positives = 370/676 (54%)

Query:    15 LIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEI 74
             L+++C    + +   +++++ L++    +++    + N  L+M+ R G++ DA  VF ++
Sbjct:   100 LVRLCEWKRAQEEGSKVYSIALSS----MSSLGVELGNAFLAMFVRFGNLVDAWYVFGKM 155

Query:    75 PKRSLVSYNALIAAYSRD--HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQL 132
              +R+L S+N L+  Y++    D A   +  +  +    ++P+  TF  + +    + D  
Sbjct:   156 SERNLFSWNVLVGGYAKQGYFDEAMCLYHRM--LWVGGVKPDVYTFPCVLRTCGGIPDLA 213

Query:   133 MGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNF 192
              G  +H  V++YG   D  V  +L+ MY  CGD +SA+ +F  +  +D ++WN++I G F
Sbjct:   214 RGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMPRRDIISWNAMISGYF 273

Query:   193 KNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLP 252
             +N    EGL LF AM G  V+P   + + +++AC  +G+   G+ IHA VI +   VD+ 
Sbjct:   274 ENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRDIHAYVITTGFAVDIS 333

Query:   253 LENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMS 312
             + N+L  MY      + A  +F+R+E  D+VSW +MI+GY  N   +KA+D +  + + S
Sbjct:   334 VCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGYEYNFLPDKAIDTYRMMDQDS 393

Query:   313 LLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESP 372
             + KPDE T AA++SA + L     G  LH L IK    S V V   L+NMY K    +  
Sbjct:   394 V-KPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISYVIVANNLINMYSKCKCIDKA 452

Query:   373 QKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADL 432
               +F  I  K+++ WT +I G  R+ +      +F +  +  L+ +   L+ AL+ACA +
Sbjct:   453 LDIFHNIPRKNVISWTSIIAG-LRLNNRCFEALIFLRQMKMTLQPNAITLTAALAACARI 511

Query:   433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALL 492
               L  G+ IH+   +TG G++  +  +L+DMY + G +  A S F+     D+  WN LL
Sbjct:   512 GALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTAWSQFNSQ-KKDVTSWNILL 570

Query:   493 GGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLI 552
              GYS  G       +F+ +++  +RPDEITF+SLL  CS S +V +G + +++M+++ + 
Sbjct:   571 TGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKSQMVRQGLMYFSKMEDYGVT 630

Query:   553 PGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAE 612
             P  KHY+C+V LL RAG L EA   I + P +     +W  LL+ C       +   +A+
Sbjct:   631 PNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPA-VWGALLNACRIHHKIDLGELSAQ 689

Query:   613 QVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFS 672
              +  LD +    +ILL NLYA  G+W  VAK+RR MK + L  + G SW+E K  VH F 
Sbjct:   690 HIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGLTVDAGCSWVEVKGKVHAFL 749

Query:   673 SGDQSHPKIDDAQAEL 688
             S D+ HP+  +    L
Sbjct:   750 SDDKYHPQTKEINTVL 765

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009451 "RNA modification" evidence=IMP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0009416 "response to light stimulus" evidence=IEP

TAIR|locus:2064828 AT2G40720 [Arabidopsis thaliana (taxid:3702)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 230/673 (34%), Positives = 363/673 (53%)

Query:    26 KRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRS-LVSYNA 84
             +  +QIH  +L  +   ++  S ++   ++ MY + G   DA +VF EI  +S +V +N 
Sbjct:   187 EEGKQIHGFMLRNS---LDTDS-FLKTALIDMYFKFGLSIDAWRVFVEIEDKSNVVLWNV 242

Query:    85 LIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKY 144
             +I  +         +  L    +   ++    +FT    A S  E+   G  +H  V+K 
Sbjct:   243 MIVGFGGS-GICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGRQIHCDVVKM 301

Query:   145 GSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLF 204
             G   D  V TSLL MYS CG    A+ +F  + DK    WN+++    +ND     L LF
Sbjct:   302 GLHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAENDYGYSALDLF 361

Query:   205 GAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKC 264
             G M    V P  F+ S +++ CS +G +  GK +HA +     Q    +E+ALL +YSKC
Sbjct:   362 GFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTSTIESALLTLYSKC 421

Query:   265 SDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMS-LLKPDEYTFAA 323
                  A+ VF  +E  D+V+W S+I+G  +NG  ++A+ +F  ++     LKPD     +
Sbjct:   422 GCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTS 481

Query:   324 IISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD 383
             + +A + L A  +G  +H  +IKTG   +VFVG++L+++Y K G  E   KVF  ++ ++
Sbjct:   482 VTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMALKVFTSMSTEN 541

Query:   384 IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHS 443
             +V W  MI  +SR    E +I LF  M  +G+  D+ +++  L A +  A L +G+ +H 
Sbjct:   542 MVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHG 601

Query:   444 QAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEE 503
                + G   +  +  +L+DMY K G  + AE+IF ++ H  L  WN ++ GY  +G    
Sbjct:   602 YTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCIT 661

Query:   504 AFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKE-HSLIPGHKHYSCMV 562
             A  +F+ + + G  PD++TFLSL+SAC+HSG VE GK ++  MK+ + + P  +HY+ MV
Sbjct:   662 ALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMV 721

Query:   563 SLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG 622
              LL RAGLL+EA + I   P  E    +W  LLS      N  + I +AE++LR++PE G
Sbjct:   722 DLLGRAGLLEEAYSFIKAMPI-EADSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERG 780

Query:   623 TTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKID 682
             +T++ L NLY   G  +  AK+   MK   L K+PG SWIE  +  +VF SG  S P   
Sbjct:   781 STYVQLINLYMEAGLKNEAAKLLGLMKEKGLHKQPGCSWIEVSDRTNVFFSGGSSSPMKA 840

Query:   683 DAQAELHRLRGNM 695
             +    L+RL+ NM
Sbjct:   841 EIFNVLNRLKSNM 853

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SCT2	PP277_ARATH	No assigned EC number	0.5685	0.9901	0.8828	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00008484001 SubName- Full=Chromosome undetermined scaffold_1496, whole genome shotgun sequence; Flags- Fragment; (720 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	708
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-139
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-89
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-69
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-67
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-55
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-51
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	7e-48
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	9e-22
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-09
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-08
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	6e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.002
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.002

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  428 bits (1102), Expect = e-139
 Identities = 229/641 (35%), Positives = 354/641 (55%), Gaps = 10/641 (1%)

Query: 52  NNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRD--HDHAHLTFRLIDQMEFE 109
           N +LSM+ R G +  A  VF ++P+R L S+N L+  Y++    D A     L  +M + 
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEA---LCLYHRMLWA 181

Query: 110 CLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESA 169
            +RP+  TF  + +    + D   G  +HA V+++G   D  V  +L+ MY  CGD  SA
Sbjct: 182 GVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSA 241

Query: 170 KRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRM 229
           + +F  +  +D ++WN++I G F+N +  EGL LF  M    V+P   + + +++AC  +
Sbjct: 242 RLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL 301

Query: 230 GNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMI 289
           G+   G+ +H  V+ +   VD+ + N+L+ MY        A  VF+R+E  D VSW +MI
Sbjct: 302 GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMI 361

Query: 290 AGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGY 349
           +GY +NG  +KA++ + AL     + PDE T A+++SA + L     G  LH L  + G 
Sbjct: 362 SGYEKNGLPDKALETY-ALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGL 420

Query: 350 DSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCK 409
            S V V   L+ MY K    +   +VF  I EKD++ WT +I G         A+  F +
Sbjct: 421 ISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ 480

Query: 410 MCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD 469
           M    LK ++  L  ALSACA +  L  G+ IH+   +TG G +  +  +L+D+Y + G 
Sbjct: 481 MLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR 539

Query: 470 LRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSA 529
           +  A + F+     D+  WN LL GY  +G    A  +F  ++E G+ PDE+TF+SLL A
Sbjct: 540 MNYAWNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598

Query: 530 CSHSGLVERGKILWNQMKE-HSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRI 588
           CS SG+V +G   ++ M+E +S+ P  KHY+C+V LL RAG L EA N I + P +    
Sbjct: 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITP-DP 657

Query: 589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM 648
            +W  LL+ C   R+  +   AA+ +  LDP     +ILL NLYA  G+WD VA++R+ M
Sbjct: 658 AVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTM 717

Query: 649 KGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELH 689
           + + L  +PG SW+E K  VH F + D+SHP+I +    L 
Sbjct: 718 RENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLE 758

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  294 bits (754), Expect = 1e-89
 Identities = 161/507 (31%), Positives = 265/507 (52%), Gaps = 8/507 (1%)

Query: 196 KMKEGLSLF-GAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLE 254
           + +E L LF     G        +Y  L+ AC  + +  C K ++  V  S  + D  + 
Sbjct: 102 RHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMM 161

Query: 255 NALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRM--S 312
           N +L M+ KC     A  +F  +   +L SW ++I G ++ GN  +A  +F   R M   
Sbjct: 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALF---REMWED 218

Query: 313 LLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESP 372
               +  TF  ++ A++ L ++  G+ LH  V+KTG     FV   L++MY K GD E  
Sbjct: 219 GSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278

Query: 373 QKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADL 432
           + VF  + EK  V W  M+ G++  G  E A+ L+ +M   G+  D F  S  +   + L
Sbjct: 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338

Query: 433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALL 492
           A+L+  +  H+   +TG  +++    +LVD+Y+K G +  A ++F ++   +L  WNAL+
Sbjct: 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398

Query: 493 GGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKE-HSL 551
            GY ++G   +A  +FE ++  G+ P+ +TFL++LSAC +SGL E+G  ++  M E H +
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458

Query: 552 IPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAA 611
            P   HY+CM+ LL R GLLDEA  +I  +P+    + +W  LL+ C   +N  +   AA
Sbjct: 459 KPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPT-VNMWAALLTACRIHKNLELGRLAA 517

Query: 612 EQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVF 671
           E++  + PE    +++L NLY ++GR    AK+   +K   L   P  +WIE K   H F
Sbjct: 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSF 577

Query: 672 SSGDQSHPKIDDAQAELHRLRGNMRKL 698
            SGD+ HP+  +   +L  L   + + 
Sbjct: 578 FSGDRLHPQSREIYQKLDELMKEISEY 604

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  241 bits (617), Expect = 7e-69
 Identities = 156/512 (30%), Positives = 251/512 (49%), Gaps = 14/512 (2%)

Query: 19  CASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRS 78
           C  I  L R R++HA V+             + N +++MY +CG +  AR VFD +P+R 
Sbjct: 197 CGGIPDLARGREVHAHVVRFGF----ELDVDVVNALITMYVKCGDVVSARLVFDRMPRRD 252

Query: 79  LVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLH 138
            +S+NA+I+ Y  + +       L   M    + P+ +T TS+  A  LL D+ +G  +H
Sbjct: 253 CISWNAMISGYFENGE-CLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311

Query: 139 AQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMK 198
             V+K G + D  V  SL+ MY + G +  A+++F  +  KDAV+W ++I G  KN    
Sbjct: 312 GYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPD 371

Query: 199 EGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALL 258
           + L  +  M    V+P + + + +L+AC+ +G+   G  +H           + + NAL+
Sbjct: 372 KALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALI 431

Query: 259 DMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSL-LKPD 317
           +MYSKC     A  VF  I   D++SW S+IAG   N    +A+  F   R+M L LKP+
Sbjct: 432 EMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFF---RQMLLTLKPN 488

Query: 318 EYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFM 377
             T  A +SA + + A   GK +HA V++TG     F+   LL++Y + G        F 
Sbjct: 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFN 548

Query: 378 LIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQ 437
              EKD+V W  ++ G+   G G  A++LF +M   G+  D       L AC+   ++ Q
Sbjct: 549 S-HEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607

Query: 438 G-EMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQV-LHPDLKCWNALLGGY 495
           G E  HS  EK      +     +VD+  + G L  A +  +++ + PD   W ALL   
Sbjct: 608 GLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNAC 667

Query: 496 SHYGMAEEAFMVFEVILEHGLRPDEITFLSLL 527
             +   E   +  + I E  L P+ + +  LL
Sbjct: 668 RIHRHVELGELAAQHIFE--LDPNSVGYYILL 697

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  237 bits (606), Expect = 2e-67
 Identities = 124/407 (30%), Positives = 213/407 (52%), Gaps = 2/407 (0%)

Query: 134 GSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFK 193
           GS + ++ +    S    +  ++L M+   G+   A  +FG + ++D  +WN ++ G  K
Sbjct: 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAK 164

Query: 194 NDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPL 253
                E L L+  M+ +GV P  +++  +L  C  + +   G+ +HA V+    ++D+ +
Sbjct: 165 AGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDV 224

Query: 254 ENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSL 313
            NAL+ MY KC D  +A  VF R+   D +SWN+MI+GY ENG   + +++F  +R +S 
Sbjct: 225 VNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS- 283

Query: 314 LKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQ 373
           + PD  T  ++ISA   L     G+ +H  V+KTG+   V V  +L+ MY   G     +
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343

Query: 374 KVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLA 433
           KVF  +  KD V WT MI G+ + G  + A++ +  M ++ +  D   ++  LSACA L 
Sbjct: 344 KVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG 403

Query: 434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLG 493
            L  G  +H  AE+ G    + V  +L++MY+K   +  A  +F  +   D+  W +++ 
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463

Query: 494 GYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGK 540
           G        EA + F  +L   L+P+ +T ++ LSAC+  G +  GK
Sbjct: 464 GLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGK 509

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  202 bits (514), Expect = 6e-55
 Identities = 108/369 (29%), Positives = 186/369 (50%), Gaps = 11/369 (2%)

Query: 185 NSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVII 244
           NS +     + ++++ L L  +M    V   + +Y  L   C        G  + +R + 
Sbjct: 55  NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114

Query: 245 SNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDM 304
           S+  + + L NA+L M+ +  +   A+ VF ++   DL SWN ++ GY + G  ++A+ +
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCL 174

Query: 305 FVALRRM--SLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNM 362
           +    RM  + ++PD YTF  ++     +P  A G+ +HA V++ G++  V V   L+ M
Sbjct: 175 Y---HRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231

Query: 363 YFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFAL 422
           Y K GD  S + VF  +  +D + W  MI G+   G+    ++LF  M    +  D   +
Sbjct: 232 YVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTI 291

Query: 423 SGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH 482
           +  +SAC  L   + G  +H    KTG  V++SVC SL+ MY   G    AE +FS++  
Sbjct: 292 TSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET 351

Query: 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKIL 542
            D   W A++ GY   G+ ++A   + ++ +  + PDEIT  S+LSAC+  G ++ G   
Sbjct: 352 KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVG--- 408

Query: 543 WNQMKEHSL 551
              +K H L
Sbjct: 409 ---VKLHEL 414

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  188 bits (479), Expect = 6e-51
 Identities = 107/314 (34%), Positives = 167/314 (53%), Gaps = 8/314 (2%)

Query: 20  ASITSLKRARQIHALVLTTNHIPINAQSP--YMYNNVLSMYGRCGSIRDARQVFDEIPKR 77
           A + +    + I  +     H+  +   P  YM N VL M+ +CG + DAR++FDE+P+R
Sbjct: 128 ALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER 187

Query: 78  SLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLL 137
           +L S+  +I     D  +    F L  +M  +       TF  + +A + L     G  L
Sbjct: 188 NLASWGTIIGGLV-DAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQL 246

Query: 138 HAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKM 197
           H  V+K G   DT V  +L+ MYS CGD E A+ +F  + +K  VAWNS++ G   +   
Sbjct: 247 HCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYS 306

Query: 198 KEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENAL 257
           +E L L+  M  SGV+  QF++S+++   SR+      K  HA +I +   +D+    AL
Sbjct: 307 EEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTAL 366

Query: 258 LDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRM--SLLK 315
           +D+YSK    + A +VF R+   +L+SWN++IAGY  +G G KAV+MF    RM    + 
Sbjct: 367 VDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMF---ERMIAEGVA 423

Query: 316 PDEYTFAAIISATS 329
           P+  TF A++SA  
Sbjct: 424 PNHVTFLAVLSACR 437

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  181 bits (460), Expect = 7e-48
 Identities = 105/322 (32%), Positives = 168/322 (52%), Gaps = 16/322 (4%)

Query: 12  IATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVF 71
           I ++I  C  +   +  R++H  V+ T      A    + N+++ MY   GS  +A +VF
Sbjct: 291 ITSVISACELLGDERLGREMHGYVVKTGF----AVDVSVCNSLIQMYLSLGSWGEAEKVF 346

Query: 72  DEIPKRSLVSYNALIAAYSRDH--DHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLE 129
             +  +  VS+ A+I+ Y ++   D A  T+ L   ME + + P+ +T  S+  A + L 
Sbjct: 347 SRMETKDAVSWTAMISGYEKNGLPDKALETYAL---MEQDNVSPDEITIASVLSACACLG 403

Query: 130 DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIIL 189
           D  +G  LH    + G      V  +L+ MYS C   + A  +F  I +KD ++W SII 
Sbjct: 404 DLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIA 463

Query: 190 GNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQV 249
           G   N++  E L  F  M+ + + P   +    L+AC+R+G  +CGK IHA V+ +    
Sbjct: 464 GLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGF 522

Query: 250 DLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALR 309
           D  L NALLD+Y +C     A++ F   E  D+VSWN ++ GY+ +G G  AV++F    
Sbjct: 523 DGFLPNALLDLYVRCGRMNYAWNQFNSHEK-DVVSWNILLTGYVAHGKGSMAVELF---N 578

Query: 310 RM--SLLKPDEYTFAAIISATS 329
           RM  S + PDE TF +++ A S
Sbjct: 579 RMVESGVNPDEVTFISLLCACS 600

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =   99 bits (249), Expect = 9e-22
 Identities = 58/221 (26%), Positives = 112/221 (50%), Gaps = 5/221 (2%)

Query: 10  RNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQ 69
           R    +++  A + S +  +Q+H  VL T  +       ++   ++ MY +CG I DAR 
Sbjct: 225 RTFVVMLRASAGLGSARAGQQLHCCVLKTGVV----GDTFVSCALIDMYSKCGDIEDARC 280

Query: 70  VFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLE 129
           VFD +P+++ V++N+++A Y+  H ++     L  +M    +  +  TF+ + +  S L 
Sbjct: 281 VFDGMPEKTTVAWNSMLAGYAL-HGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339

Query: 130 DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIIL 189
                   HA +I+ G   D    T+L+ +YS  G  E A+ +F  +  K+ ++WN++I 
Sbjct: 340 LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIA 399

Query: 190 GNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMG 230
           G   + +  + + +F  M+  GV P   ++  +L+AC   G
Sbjct: 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSG 440

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 85/378 (22%), Positives = 145/378 (38%), Gaps = 33/378 (8%)

Query: 213 NPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFS 272
           NPT  +++ML++ C+   +      +   V  +  + D  L   L+   +K       F 
Sbjct: 434 NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFE 493

Query: 273 VFTRIEN----PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISAT 328
           VF  + N     ++ ++ ++I G    G   KA   +  +R  ++ KPD   F A+ISA 
Sbjct: 494 VFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV-KPDRVVFNALISAC 552

Query: 329 SALPA-----------SAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFM 377
               A            A   P+    I  G          L+      G  +  ++V+ 
Sbjct: 553 GQSGAVDRAFDVLAEMKAETHPIDPDHITVG---------ALMKACANAGQVDRAKEVYQ 603

Query: 378 LIAEKDI----VLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLA 433
           +I E +I     ++T  +   S+ GD + A+ ++  M ++G+K D    S  +       
Sbjct: 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAG 663

Query: 434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAA----ESIFSQVLHPDLKCWN 489
            L +   I   A K G  +      SL+   +   + + A    E I S  L P +   N
Sbjct: 664 DLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMN 723

Query: 490 ALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH 549
           AL+          +A  V   +   GL P+ IT+  LL A       + G  L +Q KE 
Sbjct: 724 ALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783

Query: 550 SLIPGHKHYSCMVSLLSR 567
            + P      C+  L  R
Sbjct: 784 GIKPNLVMCRCITGLCLR 801

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 53.2 bits (129), Expect = 2e-09
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 179 KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSR 228
            D V +N++I G  K  K++E L LF  M   G+ P  ++YS+L++   +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 51.3 bits (124), Expect = 1e-08
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH 532
           PD+  +N L+ GY   G  EEA  +F  + + G++P+  T+  L+     
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 50.9 bits (123), Expect = 2e-08
 Identities = 16/48 (33%), Positives = 33/48 (68%), Gaps = 1/48 (2%)

Query: 280 PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISA 327
           PD+V++N++I GY + G  E+A+ +F  +++   +KP+ YT++ +I  
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRG-IKPNVYTYSILIDG 47

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 49.5 bits (118), Expect = 6e-06
 Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 6/122 (4%)

Query: 459 SLVDMYAKNGDLRAAESIFSQV----LHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEH 514
           +L+   AK+G + A   +F ++    +  ++  + AL+ G +  G   +AF  + ++   
Sbjct: 477 TLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSK 536

Query: 515 GLRPDEITFLSLLSACSHSGLVERGKILWNQMK--EHSLIPGHKHYSCMVSLLSRAGLLD 572
            ++PD + F +L+SAC  SG V+R   +  +MK   H + P H     ++   + AG +D
Sbjct: 537 NVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVD 596

Query: 573 EA 574
            A
Sbjct: 597 RA 598

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 39.7 bits (94), Expect = 1e-04
 Identities = 14/50 (28%), Positives = 26/50 (52%)

Query: 382 KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACAD 431
            D+V +  +I G+ + G  E A+KLF +M + G+K + +  S  +     
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.2 bits (90), Expect = 5e-04
 Identities = 12/45 (26%), Positives = 25/45 (55%), Gaps = 4/45 (8%)

Query: 51 YNNVLSMYGRCGSIRDARQVFDEIPKRSL----VSYNALIAAYSR 91
          YN ++  Y + G + +A ++F+E+ KR +     +Y+ LI    +
Sbjct: 6  YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 42.6 bits (100), Expect = 8e-04
 Identities = 42/231 (18%), Positives = 95/231 (41%), Gaps = 52/231 (22%)

Query: 12  IATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVF 71
           +  L++ CA+   + RA++++ ++   N   I   +P +Y   ++   + G    A  ++
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYN---IKG-TPEVYTIAVNSCSQKGDWDFALSIY 637

Query: 72  DEIPKRSL----VSYNALI--AAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAV 125
           D++ K+ +    V ++AL+  A ++ D D A   F ++     + ++             
Sbjct: 638 DDMKKKGVKPDEVFFSALVDVAGHAGDLDKA---FEILQDARKQGIKLG----------- 683

Query: 126 SLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIF---GLIGDKDAV 182
                                   T   +SL+G  SN  +++ A  ++     I  +  V
Sbjct: 684 ------------------------TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTV 719

Query: 183 A-WNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNF 232
           +  N++I    + +++ + L +   M   G+ P   +YS+LL A  R  + 
Sbjct: 720 STMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA 770

Length = 1060

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE 520
            +N L+ G    G  EEA  +F+ + E G+ PD 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 10/31 (32%), Positives = 22/31 (70%)

Query: 283 VSWNSMIAGYMENGNGEKAVDMFVALRRMSL 313
           V++NS+I+GY + G  E+A+++F  ++   +
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 4/118 (3%)

Query: 461 VDMYAKNGDLRAAESIFSQVLH----PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGL 516
           V+  ++ GD   A SI+  +      PD   ++AL+    H G  ++AF + +   + G+
Sbjct: 621 VNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680

Query: 517 RPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEA 574
           +   +++ SL+ ACS++   ++   L+  +K   L P     + +++ L     L +A
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 36.6 bits (86), Expect = 0.002
 Identities = 15/50 (30%), Positives = 26/50 (52%)

Query: 518 PDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR 567
           PD +T+ +L+      G VE    L+N+MK+  + P    YS ++  L +
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	708
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.91
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.88
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.84
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.84
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.84
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.82
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.81
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.81
PRK14574	822	hmsH outer membrane protein; Provisional	99.8
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.79
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.78
KOG2076	895	consensus RNA polymerase III transcription factor	99.76
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.75
PRK14574	822	hmsH outer membrane protein; Provisional	99.73
KOG2003	840	consensus TPR repeat-containing protein [General f	99.72
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.72
KOG2076	895	consensus RNA polymerase III transcription factor	99.71
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.69
KOG2003	840	consensus TPR repeat-containing protein [General f	99.64
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.63
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.61
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.61
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.59
KOG1126	638	consensus DNA-binding cell division cycle control	99.57
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.54
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.54
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.51
KOG1126	638	consensus DNA-binding cell division cycle control	99.51
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.5
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.5
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.48
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.48
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.47
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.46
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.45
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.43
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.4
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.35
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.35
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.35
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.34
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.32
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.31
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.3
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.3
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.29
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.29
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.28
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.28
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.27
PRK11189	296	lipoprotein NlpI; Provisional	99.26
KOG1129	478	consensus TPR repeat-containing protein [General f	99.25
PRK12370	553	invasion protein regulator; Provisional	99.23
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.23
PF13041	50	PPR_2: PPR repeat family	99.2
PF13041	50	PPR_2: PPR repeat family	99.2
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.19
PRK12370	553	invasion protein regulator; Provisional	99.18
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.17
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.14
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.13
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.11
PRK11189	296	lipoprotein NlpI; Provisional	99.1
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.09
KOG1129	478	consensus TPR repeat-containing protein [General f	99.08
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.06
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.06
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.05
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.04
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.03
KOG1125	579	consensus TPR repeat-containing protein [General f	98.99
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.99
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.97
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.96
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.95
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.94
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.89
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.87
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.87
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.86
PRK15359	144	type III secretion system chaperone protein SscB;	98.86
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.84
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.79
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.79
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.79
PRK15359	144	type III secretion system chaperone protein SscB;	98.78
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.77
PRK04841	903	transcriptional regulator MalT; Provisional	98.63
PRK04841	903	transcriptional regulator MalT; Provisional	98.63
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.61
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.61
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.61
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.6
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.6
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.59
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.59
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.58
PLN02789	320	farnesyltranstransferase	98.58
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.56
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.56
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.53
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.52
PLN02789	320	farnesyltranstransferase	98.52
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.5
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.46
PF12854	34	PPR_1: PPR repeat	98.44
PF12854	34	PPR_1: PPR repeat	98.42
KOG1125	579	consensus TPR repeat-containing protein [General f	98.41
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.38
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.38
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.36
KOG0553	304	consensus TPR repeat-containing protein [General f	98.36
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.35
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.33
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.31
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.29
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.27
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.27
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.24
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.22
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.22
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.21
PRK15331	165	chaperone protein SicA; Provisional	98.21
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.19
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.18
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.18
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.16
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.09
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.09
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.08
KOG0553	304	consensus TPR repeat-containing protein [General f	98.07
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.03
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.02
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.0
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.99
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.98
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.96
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.94
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.91
PRK14720	906	transcript cleavage factor/unknown domain fusion p	97.91
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.9
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.9
PF13371	73	TPR_9: Tetratricopeptide repeat	97.88
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.84
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.81
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.81
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.8
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.79
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.74
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.74
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.7
PF13431	34	TPR_17: Tetratricopeptide repeat	97.7
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.7
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.64
PRK10803	263	tol-pal system protein YbgF; Provisional	97.59
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.58
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.58
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.57
PF12688	120	TPR_5: Tetratrico peptide repeat	97.56
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.55
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.55
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.52
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.5
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.5
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.5
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.47
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.47
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.47
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.39
PF13428	44	TPR_14: Tetratricopeptide repeat	97.36
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.35
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.34
PRK10803	263	tol-pal system protein YbgF; Provisional	97.33
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.33
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.33
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.31
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.28
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.25
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.25
PF13371	73	TPR_9: Tetratricopeptide repeat	97.24
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.2
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.18
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.16
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.12
PF13512	142	TPR_18: Tetratricopeptide repeat	97.11
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.1
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.06
KOG4234	271	consensus TPR repeat-containing protein [General f	97.05
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.03
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.03
PF12688	120	TPR_5: Tetratrico peptide repeat	96.96
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.96
KOG4555	175	consensus TPR repeat-containing protein [Function	96.92
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.9
PRK11906	458	transcriptional regulator; Provisional	96.9
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.9
KOG1258	577	consensus mRNA processing protein [RNA processing	96.89
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.8
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.79
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.76
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.74
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.68
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.64
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.63
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.61
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.6
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	96.59
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.59
PRK11906	458	transcriptional regulator; Provisional	96.52
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.51
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.43
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.3
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	96.22
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.2
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.2
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.16
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.93
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.92
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.91
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.84
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.75
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.73
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	95.68
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.65
COG0457	291	NrfG FOG: TPR repeat [General function prediction	95.45
PRK11619	644	lytic murein transglycosylase; Provisional	95.2
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.11
PF13428	44	TPR_14: Tetratricopeptide repeat	95.1
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	95.02
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.96
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.91
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.87
KOG4648	536	consensus Uncharacterized conserved protein, conta	94.85
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.81
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.74
PRK15331	165	chaperone protein SicA; Provisional	94.73
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.71
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.68
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.66
KOG4555	175	consensus TPR repeat-containing protein [Function	94.61
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	94.58
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.58
PRK10941	269	hypothetical protein; Provisional	94.51
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.51
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.44
PF13512	142	TPR_18: Tetratricopeptide repeat	94.4
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	94.36
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.36
KOG3941	406	consensus Intermediate in Toll signal transduction	94.28
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.19
KOG1585	308	consensus Protein required for fusion of vesicles	94.1
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.0
KOG3941	406	consensus Intermediate in Toll signal transduction	93.91
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.89
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	93.8
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.78
PRK09687	280	putative lyase; Provisional	93.75
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	93.52
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	93.44
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.33
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.14
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	93.01
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.0
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.84
KOG4648	536	consensus Uncharacterized conserved protein, conta	92.79
KOG1258	577	consensus mRNA processing protein [RNA processing	92.51
KOG1585	308	consensus Protein required for fusion of vesicles	92.47
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	92.4
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	92.16
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	92.12
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	92.12
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	92.09
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.77
PRK09687	280	putative lyase; Provisional	91.25
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.1
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.03
KOG4234	271	consensus TPR repeat-containing protein [General f	91.02
KOG3364	149	consensus Membrane protein involved in organellar	90.87
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	90.85
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.79
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.74
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	90.65
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	90.56
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	90.43
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	90.4
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	90.3
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	90.21
KOG1586	288	consensus Protein required for fusion of vesicles	90.17
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	90.11
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	89.96
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	89.71
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	89.63
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.98
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	88.97
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	88.86
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.63
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	88.37
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	87.9
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.72
PF13431	34	TPR_17: Tetratricopeptide repeat	87.5
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.31
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	87.02
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.86
KOG1550	552	consensus Extracellular protein SEL-1 and related	86.8
COG3629	280	DnrI DNA-binding transcriptional activator of the	86.76
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	86.62
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	86.54
PRK11619	644	lytic murein transglycosylase; Provisional	86.09
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	86.05
COG4455	273	ImpE Protein of avirulence locus involved in tempe	85.99
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	85.87
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	85.82
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	85.76
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	85.75
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	85.7
KOG4570	418	consensus Uncharacterized conserved protein [Funct	85.24
PF14432	116	DYW_deaminase: DYW family of nucleic acid deaminas	85.24
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.21
KOG1586	288	consensus Protein required for fusion of vesicles	85.15
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	85.0
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	84.88
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	84.87
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	84.8
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	84.7
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	84.38
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	84.22
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	83.91
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	83.53
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	83.17
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	82.84
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	82.83
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	82.35
KOG1550	552	consensus Extracellular protein SEL-1 and related	82.24
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	81.49
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	81.01
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	80.42
PF13929	292	mRNA_stabil: mRNA stabilisation	80.25

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1e-103  Score=883.79  Aligned_cols=686  Identities=33%  Similarity=0.561  Sum_probs=670.3

Q ss_pred             cchhchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHH
Q 038516            6 ENLCRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNAL   85 (708)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l   85 (708)
                      ++...++..++.+|.+.+.+..|.++|+.+...|+.    ++..++|.|+.+|+++|+++.|.++|++|++||+.+||++
T Consensus        83 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~l  158 (857)
T PLN03077         83 PVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPS----LGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVL  158 (857)
T ss_pred             CCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCC----CCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHHHH
Confidence            344567788888888888888899999988888887    8899999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCC
Q 038516           86 IAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGD  165 (708)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  165 (708)
                      |.+|++.|+ +++|+++|++|...|+.||..||++++++|+..+++..+.+++..|.+.|+.||..++++||.+|+++|+
T Consensus       159 i~~~~~~g~-~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~  237 (857)
T PLN03077        159 VGGYAKAGY-FDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGD  237 (857)
T ss_pred             HHHHHhCCC-HHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCC
Confidence            999999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 038516          166 FESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIIS  245 (708)
Q Consensus       166 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  245 (708)
                      ++.|.++|+.|+.+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.+.+++..+.+.
T Consensus       238 ~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~  317 (857)
T PLN03077        238 VVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT  317 (857)
T ss_pred             HHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHH
Q 038516          246 NTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAII  325 (708)
Q Consensus       246 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll  325 (708)
                      |..||..+|+.|+.+|++.|++++|.++|++|..||..+||.+|.+|++.|++++|+++|++|.+. |+.||..||+.++
T Consensus       318 g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~Pd~~t~~~ll  396 (857)
T PLN03077        318 GFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQD-NVSPDEITIASVL  396 (857)
T ss_pred             CCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHh-CCCCCceeHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998 9999999999999


Q ss_pred             HHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHH
Q 038516          326 SATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIK  405 (708)
Q Consensus       326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~  405 (708)
                      .+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++|..+|+.+|.+|++.|+.++|+.
T Consensus       397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~  476 (857)
T PLN03077        397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI  476 (857)
T ss_pred             HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCCh
Q 038516          406 LFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDL  485 (708)
Q Consensus       406 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  485 (708)
                      +|++|.. ++.||..||+.++.+|++.|.++.+.+++..+.+.|+.++..++|+|+++|+++|++++|.++|+.+ .+|.
T Consensus       477 lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~  554 (857)
T PLN03077        477 FFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDV  554 (857)
T ss_pred             HHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCCh
Confidence            9999986 6999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhH-CCCCcChHHHHHHHHH
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKE-HSLIPGHKHYSCMVSL  564 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~p~~~~~~~l~~~  564 (708)
                      .+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++|+++
T Consensus       555 ~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~  634 (857)
T PLN03077        555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDL  634 (857)
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999995 5999999999999999


Q ss_pred             HHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 038516          565 LSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKM  644 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~  644 (708)
                      |++.|++++|.+++++|+.. |+..+|.+|+.+|..+|+.+.|+.+.+++++++|+++..|..|+++|...|+|++|.++
T Consensus       635 l~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~v  713 (857)
T PLN03077        635 LGRAGKLTEAYNFINKMPIT-PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARV  713 (857)
T ss_pred             HHhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHH
Confidence            99999999999999999977 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhh
Q 038516          645 RRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVT  700 (708)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  700 (708)
                      ++.|+++|++|+||+|||++++++|.|.+||.+||+.++||..|+.|..+|++..+
T Consensus       714 r~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~  769 (857)
T PLN03077        714 RKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL  769 (857)
T ss_pred             HHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCc
Confidence            99999999999999999999999999999999999999999999999999998643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.5e-78  Score=661.35  Aligned_cols=519  Identities=31%  Similarity=0.526  Sum_probs=509.7

Q ss_pred             CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCC-CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHH
Q 038516          179 KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSG-VNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENAL  257 (708)
Q Consensus       179 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  257 (708)
                      ++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+++.|
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L  164 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV  164 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            567799999999999999999999999998764 7899999999999999999999999999999999999999999999


Q ss_pred             HHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccch
Q 038516          258 LDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYG  337 (708)
Q Consensus       258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a  337 (708)
                      +++|++.|+++.|.++|++|.+||..+||.++.+|++.|++++|+++|++|.+. |..||..||..++.+|+..|..+.+
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p~~~t~~~ll~a~~~~~~~~~~  243 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDAEPRTFVVMLRASAGLGSARAG  243 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCCChhhHHHHHHHHhcCCcHHHH
Confidence            999999999999999999999999999999999999999999999999999998 8999999999999999999999999


Q ss_pred             HHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCcc
Q 038516          338 KPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKC  417 (708)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p  417 (708)
                      .+++..+.+.|+.+|..++++|+++|+++|++++|.++|++|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+.|
T Consensus       244 ~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~p  323 (697)
T PLN03081        244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI  323 (697)
T ss_pred             HHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHh
Q 038516          418 DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSH  497 (708)
Q Consensus       418 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  497 (708)
                      |..||+.++.+|++.|.++.|.+++..+.+.|+.|+..++++|+++|+++|++++|.++|++|.+||+.+||+||.+|++
T Consensus       324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~  403 (697)
T PLN03081        324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN  403 (697)
T ss_pred             CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHH
Q 038516          498 YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAEN  576 (708)
Q Consensus       498 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~  576 (708)
                      .|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+. |+.|+..+|++|+++|++.|++++|.+
T Consensus       404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~  483 (697)
T PLN03081        404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA  483 (697)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999875 999999999999999999999999999


Q ss_pred             HHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccC
Q 038516          577 LIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKE  656 (708)
Q Consensus       577 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~  656 (708)
                      ++++++.. |+..+|+.++.+|..+|+++.|+.+++++++++|++...|..|+++|.+.|+|++|.++++.|+++|++|.
T Consensus       484 ~~~~~~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~  562 (697)
T PLN03081        484 MIRRAPFK-PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMH  562 (697)
T ss_pred             HHHHCCCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccC
Confidence            99999988 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhh
Q 038516          657 PGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLV  699 (708)
Q Consensus       657 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  699 (708)
                      ||+||+++++.+|.|.+||.+||+.++|+.+|.++..+|++..
T Consensus       563 ~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g  605 (697)
T PLN03081        563 PACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYG  605 (697)
T ss_pred             CCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999999999999999863

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=4e-77  Score=669.04  Aligned_cols=574  Identities=25%  Similarity=0.435  Sum_probs=558.3

Q ss_pred             CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhH
Q 038516           76 KRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTS  155 (708)
Q Consensus        76 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~  155 (708)
                      .++..++|.++.++++.|+ +++|+.+|+.|.+.|+.|+..+|..++++|.+.+.++.+.+++..+.+.|..++..++|+
T Consensus        48 ~~~~~~~n~~i~~l~~~g~-~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~  126 (857)
T PLN03077         48 SSSTHDSNSQLRALCSHGQ-LEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNA  126 (857)
T ss_pred             ccchhhHHHHHHHHHhCCC-HHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHH
Confidence            5677889999999999999 999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHH
Q 038516          156 LLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCG  235 (708)
Q Consensus       156 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  235 (708)
                      |+.+|+++|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..++++.+
T Consensus       127 li~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~  206 (857)
T PLN03077        127 MLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARG  206 (857)
T ss_pred             HHHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 038516          236 KVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLK  315 (708)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  315 (708)
                      .+++..+.+.|+.||..+++.|+.+|++.|+++.|.++|++|+++|.++||++|.+|++.|++++|+++|++|... |+.
T Consensus       207 ~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~-g~~  285 (857)
T PLN03077        207 REVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMREL-SVD  285 (857)
T ss_pred             HHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHc-CCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             CCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHh
Q 038516          316 PDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHS  395 (708)
Q Consensus       316 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~  395 (708)
                      ||..||+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+||.+|.+|+
T Consensus       286 Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~  365 (857)
T PLN03077        286 PDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE  365 (857)
T ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHH
Q 038516          396 RMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAES  475 (708)
Q Consensus       396 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  475 (708)
                      +.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+.+.|+.|+..++++|+.+|+++|++++|.+
T Consensus       366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~  445 (857)
T PLN03077        366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE  445 (857)
T ss_pred             hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh
Q 038516          476 IFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH  555 (708)
Q Consensus       476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~  555 (708)
                      +|++|.++|+.+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++.
T Consensus       446 vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~  524 (857)
T PLN03077        446 VFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG  524 (857)
T ss_pred             HHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence            99999999999999999999999999999999999986 59999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCCCcchHHHHHHHHH
Q 038516          556 KHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL--DPEDGTTHILLSNLYA  633 (708)
Q Consensus       556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l~~~~~  633 (708)
                      .++++|+++|.++|++++|.++|+++  . ++..+|+.++.+|.++|+.++|.++++++.+.  .|+. .+|..+..+|.
T Consensus       525 ~~~naLi~~y~k~G~~~~A~~~f~~~--~-~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~-~T~~~ll~a~~  600 (857)
T PLN03077        525 FLPNALLDLYVRCGRMNYAWNQFNSH--E-KDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDE-VTFISLLCACS  600 (857)
T ss_pred             eechHHHHHHHHcCCHHHHHHHHHhc--C-CChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCc-ccHHHHHHHHh
Confidence            99999999999999999999999998  3 89999999999999999999999999999874  5654 45888889999


Q ss_pred             hcCCchHHHHHHHHHh-cCCCccC
Q 038516          634 ATGRWDCVAKMRRKMK-GSMLGKE  656 (708)
Q Consensus       634 ~~g~~~eA~~~~~~~~-~~~~~~~  656 (708)
                      +.|++++|.++|+.|. +.|+.+.
T Consensus       601 ~~g~v~ea~~~f~~M~~~~gi~P~  624 (857)
T PLN03077        601 RSGMVTQGLEYFHSMEEKYSITPN  624 (857)
T ss_pred             hcChHHHHHHHHHHHHHHhCCCCc
Confidence            9999999999999998 5676543

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.4e-67  Score=576.13  Aligned_cols=520  Identities=16%  Similarity=0.190  Sum_probs=475.7

Q ss_pred             CCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcc-----cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHH
Q 038516           46 QSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLV-----SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTS  120 (708)
Q Consensus        46 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  120 (708)
                      ++...|..++..|+++|++++|+++|++|++++..     .++.++.+|.+.|. .+.|+.+++.|..    ||..+|+.
T Consensus       368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~-~~eAl~lf~~M~~----pd~~Tyn~  442 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRA-VKEAFRFAKLIRN----PTLSTFNM  442 (1060)
T ss_pred             CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCC-HHHHHHHHHHcCC----CCHHHHHH
Confidence            56778899999999999999999999999866544     45677788999999 9999999999975    99999999


Q ss_pred             HHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCC----CCCcccHHHHHHHHhcCCC
Q 038516          121 LAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIG----DKDAVAWNSIILGNFKNDK  196 (708)
Q Consensus       121 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~  196 (708)
                      ++.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|+++.|.++|++|.    .||..+|+.+|.+|++.|+
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~  522 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ  522 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence            999999999999999999999999999999999999999999999999999999998    4899999999999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHH--hCCCCChhhHHHHHHhcccCCChHHHHHHH
Q 038516          197 MKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVII--SNTQVDLPLENALLDMYSKCSDTQTAFSVF  274 (708)
Q Consensus       197 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  274 (708)
                      +++|+++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|
T Consensus       523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf  602 (1060)
T PLN03218        523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY  602 (1060)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999987  578999999999999999999999999999


Q ss_pred             hccCC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCC
Q 038516          275 TRIEN----PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYD  350 (708)
Q Consensus       275 ~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  350 (708)
                      +.|.+    |+..+|+.+|.+|++.|++++|.++|++|.+. |+.||..||+.++.+|++.|+++.|.++++.|.+.|+.
T Consensus       603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~  681 (1060)
T PLN03218        603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK  681 (1060)
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            99976    77899999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             CchhHHhHHHHHHHhcCCChhHHHHHhhcC----CCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHH
Q 038516          351 SSVFVGTTLLNMYFKNGDAESPQKVFMLIA----EKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGAL  426 (708)
Q Consensus       351 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  426 (708)
                      |+..+|+.||.+|++.|++++|.++|++|.    .+|..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus       682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL  761 (1060)
T PLN03218        682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL  761 (1060)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            999999999999999999999999999995    5799999999999999999999999999999999999999999999


Q ss_pred             HHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHH
Q 038516          427 SACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFM  506 (708)
Q Consensus       427 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  506 (708)
                      .+|++.|+++.|.+++..|.+.|+.|+..+|++++.+|.  +++++|.++.+.+..     |+. .......+..+.|..
T Consensus       762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al~  833 (1060)
T PLN03218        762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS-----FDS-GRPQIENKWTSWALM  833 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-----hhc-cccccccchHHHHHH
Confidence            999999999999999999999999999999999997654  245666555443321     110 011112233467999


Q ss_pred             HHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          507 VFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       507 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      +|++|.+.|+.||..||+.++.++++.+....+..+++.|...+..|+..+|++|++++.+.  .++|..++++|
T Consensus       834 lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em  906 (1060)
T PLN03218        834 VYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA  906 (1060)
T ss_pred             HHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence            99999999999999999999998889999999999999998888899999999999998432  47899999998

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=5.2e-67  Score=573.22  Aligned_cols=474  Identities=24%  Similarity=0.395  Sum_probs=460.6

Q ss_pred             CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcC-CCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHh
Q 038516           76 KRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFEC-LRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQT  154 (708)
Q Consensus        76 ~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~  154 (708)
                      .++..+|+.+|.++.+.|+ +++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+
T Consensus        84 ~~~~~~~~~~i~~l~~~g~-~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n  162 (697)
T PLN03081         84 RKSGVSLCSQIEKLVACGR-HREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMN  162 (697)
T ss_pred             CCCceeHHHHHHHHHcCCC-HHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHH
Confidence            4567799999999999999 999999999999864 78999999999999999999999999999999999999999999


Q ss_pred             HHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhH
Q 038516          155 SLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVC  234 (708)
Q Consensus       155 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  234 (708)
                      .|+.+|+++|+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|+..|+.+.
T Consensus       163 ~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~  242 (697)
T PLN03081        163 RVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA  242 (697)
T ss_pred             HHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 038516          235 GKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLL  314 (708)
Q Consensus       235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  314 (708)
                      +.+++..+.+.|..+|..++++|+++|+++|++++|.++|+.|.++|+++||.+|.+|++.|++++|+++|++|.+. |+
T Consensus       243 ~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-g~  321 (697)
T PLN03081        243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-GV  321 (697)
T ss_pred             HHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999998 99


Q ss_pred             CCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHH
Q 038516          315 KPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGH  394 (708)
Q Consensus       315 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~  394 (708)
                      .||..||+.++.+|++.|+++.|.+++..|.+.|++||..++++|+++|+++|++++|.++|++|.++|+.+||.||.+|
T Consensus       322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y  401 (697)
T PLN03081        322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY  401 (697)
T ss_pred             CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHH-hCCCCchhHHHHHHHhhHhcCCHHHH
Q 038516          395 SRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEK-TGHGVEMSVCGSLVDMYAKNGDLRAA  473 (708)
Q Consensus       395 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A  473 (708)
                      ++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|
T Consensus       402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA  481 (697)
T PLN03081        402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA  481 (697)
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHH
Confidence            99999999999999999999999999999999999999999999999999976 69999999999999999999999999


Q ss_pred             HHHHhhCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCC
Q 038516          474 ESIFSQVL-HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSL  551 (708)
Q Consensus       474 ~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  551 (708)
                      .+++++|. .|+..+|++|+.+|...|+++.|..+++++.+  +.|+ ..+|..|+..|++.|++++|.++++.|.+.|+
T Consensus       482 ~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~  559 (697)
T PLN03081        482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL  559 (697)
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            99999996 79999999999999999999999999999976  5664 67899999999999999999999999999987


Q ss_pred             Cc
Q 038516          552 IP  553 (708)
Q Consensus       552 ~p  553 (708)
                      ..
T Consensus       560 ~k  561 (697)
T PLN03081        560 SM  561 (697)
T ss_pred             cc
Confidence            54

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=5e-65  Score=557.90  Aligned_cols=529  Identities=12%  Similarity=0.160  Sum_probs=471.1

Q ss_pred             hchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHH
Q 038516            9 CRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAA   88 (708)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~   88 (708)
                      ...+..++..|.+.|+++.|.++|+.|.+.|+.|   ++...++.++.+|.+.|.+++|..+|+.|..|+..+||.+|.+
T Consensus       370 ~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~---~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a  446 (1060)
T PLN03218        370 SPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLD---MDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSV  446 (1060)
T ss_pred             chHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCC---chHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence            3567788889999999999999999999988541   6788889999999999999999999999999999999999999


Q ss_pred             HHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhH
Q 038516           89 YSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFES  168 (708)
Q Consensus        89 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~  168 (708)
                      |++.|+ ++.|.++|+.|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.||.+|++.|++++
T Consensus       447 ~~k~g~-~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee  525 (1060)
T PLN03218        447 CASSQD-IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK  525 (1060)
T ss_pred             HHhCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence            999999 9999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhccCCC----CCcccHHHHHHHHhcCCChhHHHHHHHHHHh--CCCCCCcchHHHHHHHHhccCChhHHHHHHHHH
Q 038516          169 AKRIFGLIGD----KDAVAWNSIILGNFKNDKMKEGLSLFGAMVG--SGVNPTQFSYSMLLNACSRMGNFVCGKVIHARV  242 (708)
Q Consensus       169 A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  242 (708)
                      |.++|+.|..    ||..+||.+|.+|++.|++++|.++|++|..  .|+.||..+|+.+|.+|++.|++++|.++|+.|
T Consensus       526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M  605 (1060)
T PLN03218        526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI  605 (1060)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999963    8999999999999999999999999999986  689999999999999999999999999999999


Q ss_pred             HHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCH
Q 038516          243 IISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN----PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDE  318 (708)
Q Consensus       243 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~  318 (708)
                      .+.|+.|+..+|+.++.+|++.|++++|.++|++|.+    ||..+|+.++.+|++.|++++|.++|++|.+. |+.||.
T Consensus       606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-G~~pd~  684 (1060)
T PLN03218        606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ-GIKLGT  684 (1060)
T ss_pred             HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCH
Confidence            9999999999999999999999999999999999985    89999999999999999999999999999999 999999


Q ss_pred             hHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC----CCEeeehhhHHHH
Q 038516          319 YTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE----KDIVLWTEMIIGH  394 (708)
Q Consensus       319 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~  394 (708)
                      .+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|..    ||..+|+.++.+|
T Consensus       685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~  764 (1060)
T PLN03218        685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS  764 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999964    6889999999999


Q ss_pred             hcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHH
Q 038516          395 SRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAE  474 (708)
Q Consensus       395 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  474 (708)
                      ++.|++++|.+++.+|.+.|+.||..+|+.++..|.+  .++++..+.+.+...+.          .......+..+.|.
T Consensus       765 ~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~~----------g~~~~~n~w~~~Al  832 (1060)
T PLN03218        765 ERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFDS----------GRPQIENKWTSWAL  832 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhhc----------cccccccchHHHHH
Confidence            9999999999999999999999999999999977642  34555444333222110          01111123345677


Q ss_pred             HHHhhCC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCC
Q 038516          475 SIFSQVL----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHS  550 (708)
Q Consensus       475 ~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  550 (708)
                      .+|++|.    .||..+|+.++.+++..+....+..+++.|...+..|+..+|++++.+|.+.  .++|..+|++|.+.|
T Consensus       833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G  910 (1060)
T PLN03218        833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG  910 (1060)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence            7777774    5777778777777777777777777777777777777777888888777432  357888888887777


Q ss_pred             CCcChH
Q 038516          551 LIPGHK  556 (708)
Q Consensus       551 ~~p~~~  556 (708)
                      +.|+..
T Consensus       911 i~p~~~  916 (1060)
T PLN03218        911 VVPSVS  916 (1060)
T ss_pred             CCCCcc
Confidence            777764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=5.5e-36  Score=345.93  Aligned_cols=622  Identities=13%  Similarity=0.053  Sum_probs=299.7

Q ss_pred             chHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCC--CC-cccHHHHH
Q 038516           10 RNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPK--RS-LVSYNALI   86 (708)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ll   86 (708)
                      ..+..+...+...|+++.|...++.+.+....     ++..+......+...|++++|...|+++.+  |+ ...+-.+.
T Consensus       228 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~  302 (899)
T TIGR02917       228 AVLLALATILIEAGEFEEAEKHADALLKKAPN-----SPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAG  302 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-----CchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            34455556666677777777777766655432     222333333344455666666666655432  11 11222223


Q ss_pred             HHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCCh
Q 038516           87 AAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDF  166 (708)
Q Consensus        87 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  166 (708)
                      ..+...|+ ++.|...+++..+.. +.+...+..+...+...|+++.|...+..+.+.. +.+...+..+...+.+.|++
T Consensus       303 ~~~~~~g~-~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~  379 (899)
T TIGR02917       303 ASEYQLGN-LEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDF  379 (899)
T ss_pred             HHHHHcCC-HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCH
Confidence            33444555 555555555554432 1222334444444455555555555555554433 22344445555555555555


Q ss_pred             hHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCC--------------------------------
Q 038516          167 ESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSG--------------------------------  211 (708)
Q Consensus       167 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------------------------------  211 (708)
                      ++|.+.|+.+..   .+...|..+...+...|++++|.+.|+.+.+..                                
T Consensus       380 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  459 (899)
T TIGR02917       380 EKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEK  459 (899)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            555555544332   122334444444444455555555554444332                                


Q ss_pred             -CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHH
Q 038516          212 -VNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNS  287 (708)
Q Consensus       212 -~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~  287 (708)
                       .+++..++..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+   .+..++..
T Consensus       460 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  538 (899)
T TIGR02917       460 KQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILA  538 (899)
T ss_pred             hCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHH
Confidence             12233444444444555555555555555444432 22333444444444555555555555544432   23344444


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcC
Q 038516          288 MIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNG  367 (708)
Q Consensus       288 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g  367 (708)
                      +...+.+.|+.++|..+++++...  .+.+...+..+...+...|+++.|..+++.+.+.. +.+..++..+..+|.+.|
T Consensus       539 l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  615 (899)
T TIGR02917       539 LAGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG  615 (899)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence            445555555555555555554443  23333444444455555555555555555544332 334445555555555555


Q ss_pred             CChhHHHHHhhcCC---CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHH
Q 038516          368 DAESPQKVFMLIAE---KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQ  444 (708)
Q Consensus       368 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  444 (708)
                      ++++|...|+.+.+   .+...+..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.
T Consensus       616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  694 (899)
T TIGR02917       616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS  694 (899)
T ss_pred             CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55555555554432   133344445555555555555555555554431 22234444445555555555555555555


Q ss_pred             HHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 038516          445 AEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT  522 (708)
Q Consensus       445 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  522 (708)
                      +.+.+ +.+...+..+...+.+.|++++|.+.|+.+.  .|+..++..++.++.+.|++++|.+.++++.+.. +.+...
T Consensus       695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~  772 (899)
T TIGR02917       695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL  772 (899)
T ss_pred             HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence            54433 2334444445555555555555555555543  2333444445555555555555555555555431 223344


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK  601 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~  601 (708)
                      +..+...|...|++++|.+.|+++.+.. +++...+..++..+...|+ .+|+.+++++ ...+.++..+..++..+...
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  850 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK  850 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence            4444445555555555555555555421 2234445555555555555 4455555554 22222344445555555555


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          602 RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       602 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      |++++|...++++++.+|.++.++..++.+|.+.|++++|.+++++|
T Consensus       851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  897 (899)
T TIGR02917       851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL  897 (899)
T ss_pred             CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            55555555555555555555555555555555555555555555554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=1.5e-35  Score=342.22  Aligned_cols=623  Identities=12%  Similarity=0.016  Sum_probs=389.9

Q ss_pred             hchHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCC--C-CcccHHHH
Q 038516            9 CRNIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPK--R-SLVSYNAL   85 (708)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~l   85 (708)
                      ...+..+...+...|+.+.|...+....+..+     .++.++..++..+...|++++|...++.+.+  | +...+...
T Consensus       193 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p-----~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  267 (899)
T TIGR02917       193 VDALLLKGDLLLSLGNIELALAAYRKAIALRP-----NNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLK  267 (899)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHH
Confidence            34555667778889999999999999987654     3678889999999999999999999998753  2 22233333


Q ss_pred             HHHHHhCCCChHHHHHHHHHHHHcCCCCC-cchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCC
Q 038516           86 IAAYSRDHDHAHLTFRLIDQMEFECLRPN-GLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCG  164 (708)
Q Consensus        86 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g  164 (708)
                      ...+...|+ ++.|+..|+++.+.+  |+ ...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|
T Consensus       268 ~~~~~~~~~-~~~A~~~~~~~l~~~--~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g  343 (899)
T TIGR02917       268 ALVDFQKKN-YEDARETLQDALKSA--PEYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLG  343 (899)
T ss_pred             HHHHHHhcC-HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC
Confidence            345567788 999999999998764  33 2334445566778999999999999998875 345677888899999999


Q ss_pred             ChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCC-CcchHHHHHHHHhccCChhHHHHHHH
Q 038516          165 DFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNP-TQFSYSMLLNACSRMGNFVCGKVIHA  240 (708)
Q Consensus       165 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~  240 (708)
                      ++++|...++.+..   .+...++.+...+.+.|++++|.+.|+++.+.  .| +...+..+...+...|++++|...+.
T Consensus       344 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  421 (899)
T TIGR02917       344 RVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIADLE  421 (899)
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            99999999987754   35667888999999999999999999999875  34 44556667777778888888888888


Q ss_pred             HHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC
Q 038516          241 RVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPD  317 (708)
Q Consensus       241 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~  317 (708)
                      .+.+.... .......++..+.+.|++++|..+++.+..   .+..+|..+...+...|++++|...|+++.+.  .+.+
T Consensus       422 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~  498 (899)
T TIGR02917       422 TAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSI--EPDF  498 (899)
T ss_pred             HHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCc
Confidence            77765421 233344455556666666666666665543   24445555556666666666666666655543  2333


Q ss_pred             HhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHH
Q 038516          318 EYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGH  394 (708)
Q Consensus       318 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~  394 (708)
                      ...+..+...+...|+++.|...++.+...+ +.+..++..+...+.+.|+.++|...++++...   +...+..++..|
T Consensus       499 ~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  577 (899)
T TIGR02917       499 FPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY  577 (899)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence            3444445555555555555555555555443 334444555555555555555555555544321   223333444444


Q ss_pred             hcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhC----------------------------------cccHHHHHH
Q 038516          395 SRMGDGECAIKLFCKMCREGLKCDNFALSGALSACAD----------------------------------LAILKQGEM  440 (708)
Q Consensus       395 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----------------------------------~~~~~~a~~  440 (708)
                      ...|++++|..+++++.+.. +.+..++..+...+..                                  .|++++|..
T Consensus       578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  656 (899)
T TIGR02917       578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAIT  656 (899)
T ss_pred             HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHH
Confidence            44455555555444444321 2233344444444444                                  445555554


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 038516          441 IHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR  517 (708)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  517 (708)
                      +++.+.+.. +.+...+..++..+...|++++|.++++.+.   +++...+..+...+...|++++|...|+++...  .
T Consensus       657 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~  733 (899)
T TIGR02917       657 SLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--A  733 (899)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence            444444322 2233444444445555555555555554442   223444555555555566666666666665553  3


Q ss_pred             CChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 038516          518 PDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS  596 (708)
Q Consensus       518 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~  596 (708)
                      |+..++..+..++.+.|++++|.+.++.+.+. .+.+...+..++..|...|++++|...++++ ...++++..+..++.
T Consensus       734 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~  812 (899)
T TIGR02917       734 PSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAW  812 (899)
T ss_pred             CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            44445555555666666666666666665552 2233555666666666666666666666665 222245556666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      .+...|+ .+|...+++++++.|+++..+..++.+|...|++++|.+.++++.+.+
T Consensus       813 ~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       813 LYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA  867 (899)
T ss_pred             HHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            6666666 556666777666667666666667777777777777777777666543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.3e-26  Score=266.95  Aligned_cols=616  Identities=11%  Similarity=0.038  Sum_probs=463.1

Q ss_pred             hHHHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCC--CCcccH------
Q 038516           11 NIATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPK--RSLVSY------   82 (708)
Q Consensus        11 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~------   82 (708)
                      .+....+-+...++.+.|.+.+++++...+.     ++.++..++..+.+.|+.++|.+.+++..+  |+...+      
T Consensus        30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~-----~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~  104 (1157)
T PRK11447         30 QLLEQVRLGEATHREDLVRQSLYRLELIDPN-----NPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTT  104 (1157)
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHHHHccCCC-----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence            3555566777788999999999999876543     788899999999999999999999999863  433222      


Q ss_pred             -----------HHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcc-hHHHHHHHhccccchHHHHHHHHHHHHhCCCCch
Q 038516           83 -----------NALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGL-TFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDT  150 (708)
Q Consensus        83 -----------~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~  150 (708)
                                 -.+.+.+.+.|+ +++|+..|+.+.+.. +|+.. ............++.++|...++.+.+.. +.+.
T Consensus       105 ~~~~~~~~~~~l~~A~ll~~~g~-~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~  181 (1157)
T PRK11447        105 MLLSTPEGRQALQQARLLATTGR-TEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNT  181 (1157)
T ss_pred             HHhcCCchhhHHHHHHHHHhCCC-HHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCH
Confidence                       122335778899 999999999998653 33332 11112222335689999999999999886 4466


Q ss_pred             hHHhHHHHHhHhCCChhHHHHHhccCCCCCc------cc-----------------HHHHHHHHhcCCChhHHHHHHHHH
Q 038516          151 CVQTSLLGMYSNCGDFESAKRIFGLIGDKDA------VA-----------------WNSIILGNFKNDKMKEGLSLFGAM  207 (708)
Q Consensus       151 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~------~~-----------------~~~li~~~~~~g~~~~A~~~~~~m  207 (708)
                      ..+..+...+...|+.++|++.|+++.....      ..                 +...+..+-.......|...+..+
T Consensus       182 ~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~  261 (1157)
T PRK11447        182 GLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQ  261 (1157)
T ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            7888999999999999999999988753211      01                 111122222222344555556555


Q ss_pred             HhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CCh---
Q 038516          208 VGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDL---  282 (708)
Q Consensus       208 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~---  282 (708)
                      ......|+... ......+...|++++|...+++.++.. +.+...+..+..++.+.|++++|+..|++..+  |+.   
T Consensus       262 ~~~~~dp~~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~  339 (1157)
T PRK11447        262 QKQLADPAFRA-RAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNR  339 (1157)
T ss_pred             HHhccCcchHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccch
Confidence            44322333221 223455678899999999999999874 44778899999999999999999999998865  322   


Q ss_pred             hHHH------------HHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCC
Q 038516          283 VSWN------------SMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYD  350 (708)
Q Consensus       283 ~~~~------------~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  350 (708)
                      ..|.            .....+.+.|++++|...|++..+.  .+.+...+..+...+...|++++|.+.|+.+.+.. +
T Consensus       340 ~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p  416 (1157)
T PRK11447        340 DKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQV--DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-P  416 (1157)
T ss_pred             hHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-C
Confidence            1222            2244677899999999999999986  34566677788899999999999999999999875 4


Q ss_pred             CchhHHhHHHHHHHhcCCChhHHHHHhhcCCCC------------EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccC
Q 038516          351 SSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD------------IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCD  418 (708)
Q Consensus       351 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  418 (708)
                      .+...+..+...|. .++.++|...++.+....            ...+..+...+...|++++|++.|++..+.  .|+
T Consensus       417 ~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~  493 (1157)
T PRK11447        417 GNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPG  493 (1157)
T ss_pred             CCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCC
Confidence            55667777777774 467899999988765421            223455677788999999999999999876  344


Q ss_pred             -HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCC----Ch--------
Q 038516          419 -NFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP----DL--------  485 (708)
Q Consensus       419 -~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--------  485 (708)
                       ...+..+...+...|++++|...++.+.+.. +.++..+..+...+...|+.++|...++.+...    +.        
T Consensus       494 ~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~  572 (1157)
T PRK11447        494 SVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQ  572 (1157)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHh
Confidence             4566677888999999999999999988654 334555555666677899999999999988532    11        


Q ss_pred             -HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHH
Q 038516          486 -KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVS  563 (708)
Q Consensus       486 -~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~  563 (708)
                       ..+..+...+...|+.++|..+++.     .+++...+..+...+.+.|++++|+..|+++.+.  .| +...+..++.
T Consensus       573 ~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~  645 (1157)
T PRK11447        573 SDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIE  645 (1157)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence             1123456778899999999999872     2445566777888999999999999999999984  45 4778889999


Q ss_pred             HHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhcC
Q 038516          564 LLSRAGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT------THILLSNLYAATG  636 (708)
Q Consensus       564 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g  636 (708)
                      .|...|++++|++.++.+....| +...+..+..++...|+.++|.+.+++++...|+++.      .+..++.++...|
T Consensus       646 ~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G  725 (1157)
T PRK11447        646 VDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTG  725 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcC
Confidence            99999999999999999854433 5667788888899999999999999999998876553      5667899999999


Q ss_pred             CchHHHHHHHHHhc
Q 038516          637 RWDCVAKMRRKMKG  650 (708)
Q Consensus       637 ~~~eA~~~~~~~~~  650 (708)
                      ++++|...+++...
T Consensus       726 ~~~~A~~~y~~Al~  739 (1157)
T PRK11447        726 QPQQALETYKDAMV  739 (1157)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998753

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=8e-26  Score=260.49  Aligned_cols=589  Identities=11%  Similarity=0.037  Sum_probs=433.1

Q ss_pred             hhHHHHHHhccCChHHHHHHhhcCC--C-CCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchH---------
Q 038516           51 YNNVLSMYGRCGSIRDARQVFDEIP--K-RSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTF---------  118 (708)
Q Consensus        51 ~~~li~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---------  118 (708)
                      .-..++.....++.+.|.+.++++.  . .++..+..++..+.+.|+ .++|...+++..+..  |+...+         
T Consensus        31 Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~-~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~  107 (1157)
T PRK11447         31 LLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGD-SDGAQKLLDRLSQLA--PDSNAYRSSRTTMLL  107 (1157)
T ss_pred             HHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHHHHhhC--CCChHHHHHHHHHHh
Confidence            4455677788999999999999864  3 356678888889999999 999999999998864  544332         


Q ss_pred             --------HHHHHHhccccchHHHHHHHHHHHHhCCCCchhH-HhHHHHHhHhCCChhHHHHHhccCCC--C-CcccHHH
Q 038516          119 --------TSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCV-QTSLLGMYSNCGDFESAKRIFGLIGD--K-DAVAWNS  186 (708)
Q Consensus       119 --------~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~-~~~li~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~  186 (708)
                              ....+.+...|++++|.+.++.+.+... |+... ...+.......|+.++|++.|+.+..  | +...+..
T Consensus       108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p-~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~  186 (1157)
T PRK11447        108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGAP-PELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNT  186 (1157)
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCC-CChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                    2233457788999999999999987653 33221 11222223346999999999998875  3 4557788


Q ss_pred             HHHHHhcCCChhHHHHHHHHHHhCCCC----------------CCcc---hHHHHHHHHhccCChhHHHHHHHHHHHhCC
Q 038516          187 IILGNFKNDKMKEGLSLFGAMVGSGVN----------------PTQF---SYSMLLNACSRMGNFVCGKVIHARVIISNT  247 (708)
Q Consensus       187 li~~~~~~g~~~~A~~~~~~m~~~g~~----------------p~~~---~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  247 (708)
                      +...+...|+.++|++.|+++......                ++..   .+...+..+-.......+...+........
T Consensus       187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~  266 (1157)
T PRK11447        187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA  266 (1157)
T ss_pred             HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence            889999999999999999998753210                0000   011111111222223445555555443322


Q ss_pred             CCChhhHHHHHHhcccCCChHHHHHHHhccCC--C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHH---
Q 038516          248 QVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--P-DLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTF---  321 (708)
Q Consensus       248 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~---  321 (708)
                      .|+.. .......+...|++++|+..|++..+  | +...+..+..+|.+.|++++|+..|++..+...-.+....+   
T Consensus       267 dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l  345 (1157)
T PRK11447        267 DPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL  345 (1157)
T ss_pred             CcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence            33322 12335567788999999999998865  3 67788899999999999999999999988752222221111   


Q ss_pred             ---------HHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehh
Q 038516          322 ---------AAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTE  389 (708)
Q Consensus       322 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~  389 (708)
                               ......+...|++++|...++.++... +.+...+..+..++...|++++|++.|+++.+.   +...+..
T Consensus       346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~  424 (1157)
T PRK11447        346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG  424 (1157)
T ss_pred             HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence                     122345678999999999999999875 556778888999999999999999999988753   3445556


Q ss_pred             hHHHHhcCCChHHHHHHHHHHhHCCCc--------cCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038516          390 MIIGHSRMGDGECAIKLFCKMCREGLK--------CDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLV  461 (708)
Q Consensus       390 li~~~~~~~~~~~A~~~~~~m~~~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  461 (708)
                      +...|. .++.++|...++.+......        .....+......+...|++++|.+.++...+.. +.++..+..+.
T Consensus       425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA  502 (1157)
T PRK11447        425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLA  502 (1157)
T ss_pred             HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            666664 46789999988776432110        001233445566778999999999999988765 34567778899


Q ss_pred             HhhHhcCCHHHHHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH---------HHHHHHHH
Q 038516          462 DMYAKNGDLRAAESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI---------TFLSLLSA  529 (708)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------~~~~ll~~  529 (708)
                      ..|.+.|++++|...|+++.  .| +...+..+...+...|+.++|+..++++......++..         .+..+...
T Consensus       503 ~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~  582 (1157)
T PRK11447        503 QDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANR  582 (1157)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHH
Confidence            99999999999999999874  23 55566666666778899999999998875433222221         12344567


Q ss_pred             HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516          530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI  608 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~  608 (708)
                      +...|+.++|.++++.     .+++...+..+...+.+.|++++|++.++++ ...|.+...+..++..+...|+.++|+
T Consensus       583 l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~  657 (1157)
T PRK11447        583 LRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAAR  657 (1157)
T ss_pred             HHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            8899999999999872     2345566778999999999999999999998 334456888999999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      ..++++++..|+++..+..++.++...|++++|.++++++....
T Consensus       658 ~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        658 AQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            99999999999999999999999999999999999999987654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=1.1e-22  Score=223.45  Aligned_cols=564  Identities=9%  Similarity=-0.017  Sum_probs=342.5

Q ss_pred             ccCChHHHHHHhhcCC--CC-CcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHH
Q 038516           60 RCGSIRDARQVFDEIP--KR-SLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSL  136 (708)
Q Consensus        60 ~~g~~~~A~~~~~~~~--~~-~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  136 (708)
                      ..|++++|+..|+...  .| +..++..+...|.+.|+ .++|+..+++..+.  .|+...|..++..+   ++.+.|..
T Consensus        56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~-~~~A~~~~~kAv~l--dP~n~~~~~~La~i---~~~~kA~~  129 (987)
T PRK09782         56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGH-DDRARLLLEDQLKR--HPGDARLERSLAAI---PVEVKSVT  129 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhc--CcccHHHHHHHHHh---ccChhHHH
Confidence            3466666666666543  22 23445555666666666 66666666666553  34434333333222   55556666


Q ss_pred             HHHHHHHhCCCCchhHHhHHHHH--------hHhCCChhHHHHHhccCCC-CCcccHHHH-HHHHhcCCChhHHHHHHHH
Q 038516          137 LHAQVIKYGSSEDTCVQTSLLGM--------YSNCGDFESAKRIFGLIGD-KDAVAWNSI-ILGNFKNDKMKEGLSLFGA  206 (708)
Q Consensus       137 ~~~~~~~~g~~~~~~~~~~li~~--------~~~~g~~~~A~~~~~~~~~-~~~~~~~~l-i~~~~~~g~~~~A~~~~~~  206 (708)
                      +++++.+... -+..++..+...        |.+.+...++++ .+.... |+..+.... ...|.+.|++++|++++.+
T Consensus       130 ~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~  207 (987)
T PRK09782        130 TVEELLAQQK-ACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE  207 (987)
T ss_pred             HHHHHHHhCC-CChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence            6666665542 222333333333        555544444444 221111 122222222 5566666666666666666


Q ss_pred             HHhCCCCCCcchHHHHHHHHhc-cCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC-----C
Q 038516          207 MVGSGVNPTQFSYSMLLNACSR-MGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN-----P  280 (708)
Q Consensus       207 m~~~g~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~  280 (708)
                      +.+.+.. +..-...+-.++.. .++ +.+..++..    .+..+......+.+.|.+.|+.++|.++++++..     |
T Consensus       208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~  281 (987)
T PRK09782        208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDA  281 (987)
T ss_pred             HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCC
Confidence            6665321 22223334444444 234 444444332    2224556666666666666666666666665542     1


Q ss_pred             Chh------------------------------HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC
Q 038516          281 DLV------------------------------SWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA  330 (708)
Q Consensus       281 ~~~------------------------------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~  330 (708)
                      +..                              ..-.++..+.+.++++-+.++.       ...|.......-..+...
T Consensus       282 ~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~r~~~~~~  354 (987)
T PRK09782        282 QEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL-------ATLPANEMLEERYAVSVA  354 (987)
T ss_pred             ccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh-------cCCCcchHHHHHHhhccc
Confidence            000                              1112255666777777555442       233443332111122223


Q ss_pred             CCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC--CE----eeehhhHHHHhcCCC---hH
Q 038516          331 LPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK--DI----VLWTEMIIGHSRMGD---GE  401 (708)
Q Consensus       331 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~----~~~~~li~~~~~~~~---~~  401 (708)
                      .+...++...+..|.+.. +-+.....-+.-...+.|+.++|..+|+.....  +.    ..-+-++..|.+.+.   ..
T Consensus       355 ~~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  433 (987)
T PRK09782        355 TRNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA  433 (987)
T ss_pred             cCchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence            345555555555555442 334444444445556677777777777766542  11    122244555555444   22


Q ss_pred             HHHHH----------------------HHHHhH-CCCcc---CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchh
Q 038516          402 CAIKL----------------------FCKMCR-EGLKC---DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMS  455 (708)
Q Consensus       402 ~A~~~----------------------~~~m~~-~g~~p---~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  455 (708)
                      ++..+                      +..... .+..|   +...+..+..++.. ++.++|...+.......  |+..
T Consensus       434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~  510 (987)
T PRK09782        434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW  510 (987)
T ss_pred             HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence            22222                      222211 12223   34455555555544 78888998777766554  4444


Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhc
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSH  532 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~  532 (708)
                      ....+...+...|++++|...|+++.  .|+...+..+..++.+.|++++|...+++..+.  .|+.. .+..+...+..
T Consensus       511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~l~~  588 (987)
T PRK09782        511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQRYI  588 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHh
Confidence            33344555578999999999999875  355566777888899999999999999999985  45443 33334445556


Q ss_pred             cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038516          533 SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAA  611 (708)
Q Consensus       533 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~  611 (708)
                      .|++++|...+++..+  +.|+...+..++.++.+.|++++|+..++++ ...|.+...+..+..++...|+.++|+..+
T Consensus       589 ~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        589 PGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             CCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            7999999999999997  5677888999999999999999999999998 344346788888988999999999999999


Q ss_pred             HHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          612 EQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       612 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      +++++++|+++.++..++.+|...|++++|+..+++..+..
T Consensus       667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~  707 (987)
T PRK09782        667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI  707 (987)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999887653

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=6.7e-22  Score=217.15  Aligned_cols=602  Identities=10%  Similarity=-0.026  Sum_probs=412.4

Q ss_pred             hccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCC--CCcccHHHHHHHHHhCCCChH
Q 038516           20 ASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPK--RSLVSYNALIAAYSRDHDHAH   97 (708)
Q Consensus        20 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~   97 (708)
                      ...|+...|...+...++..+.     ++.++..|...|.+.|++++|+..+++..+  |+-..|..++..+   ++ ..
T Consensus        55 ~~~Gd~~~A~~~l~~Al~~dP~-----n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~-~~  125 (987)
T PRK09782         55 QKNNDEATAIREFEYIHQQVPD-----NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PV-EV  125 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCC-----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---cc-Ch
Confidence            3348888999999988887765     588888999999999999999999988753  3333444444333   56 77


Q ss_pred             HHHHHHHHHHHcCCCCCc-chHHHHHHHh-----ccccchHHHHHHHHHHHHhCCCCchhHHhHH-HHHhHhCCChhHHH
Q 038516           98 LTFRLIDQMEFECLRPNG-LTFTSLAQAV-----SLLEDQLMGSLLHAQVIKYGSSEDTCVQTSL-LGMYSNCGDFESAK  170 (708)
Q Consensus        98 ~a~~~~~~m~~~g~~p~~-~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l-i~~~~~~g~~~~A~  170 (708)
                      +|..+++++....  |+. ..+..+....     .+..+.+++.+.++ .......|+..+.... ...|.+.|++++|+
T Consensus       126 kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai  202 (987)
T PRK09782        126 KSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQAD  202 (987)
T ss_pred             hHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHH
Confidence            8888888887753  433 3333333330     11233355555555 3333344445544444 77777788888888


Q ss_pred             HHhccCCCC---CcccHHHHHHHHhc-CCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhC
Q 038516          171 RIFGLIGDK---DAVAWNSIILGNFK-NDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISN  246 (708)
Q Consensus       171 ~~~~~~~~~---~~~~~~~li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  246 (708)
                      +.+..+.+.   +......|-.+|.. .++ +.+..+++.    .++-+......+...+.+.|+.++|..++.++...-
T Consensus       203 ~lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~  277 (987)
T PRK09782        203 TLYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLF  277 (987)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccc
Confidence            777776653   22224444455555 244 666666442    223456666777777777777777777766654321


Q ss_pred             CC-CCh------------------------------hhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHH--HH
Q 038516          247 TQ-VDL------------------------------PLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAG--YM  293 (708)
Q Consensus       247 ~~-~~~------------------------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~--~~  293 (708)
                      .. |..                              .....++..+.+.+.++.+.++..  ..|....  ..++.  ..
T Consensus       278 ~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~--~~~r~~~~~  353 (987)
T PRK09782        278 TTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLA--TLPANEM--LEERYAVSV  353 (987)
T ss_pred             cCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhc--CCCcchH--HHHHHhhcc
Confidence            10 111                              112234677888999998877744  2232222  22322  22


Q ss_pred             cCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHH-C-CCCchhHHhHHHHHHHhcCCChh
Q 038516          294 ENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKT-G-YDSSVFVGTTLLNMYFKNGDAES  371 (708)
Q Consensus       294 ~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~li~~~~~~g~~~~  371 (708)
                      ..+...++.+.++.|.+.  .+-+......+--.....|+.++|.+++...... + -..+....+.|+..|.+.+.+..
T Consensus       354 ~~~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~  431 (987)
T PRK09782        354 ATRNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLAT  431 (987)
T ss_pred             ccCchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccc
Confidence            346677777777777765  3445555555555566788899999998887662 1 12344455577888887766333


Q ss_pred             HHHHHh----------------------------hcCC---C--CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccC
Q 038516          372 PQKVFM----------------------------LIAE---K--DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCD  418 (708)
Q Consensus       372 A~~~~~----------------------------~~~~---~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~  418 (708)
                      ..+...                            ....   .  +...|..+..++.. ++.++|+..+.+....  .|+
T Consensus       432 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd  508 (987)
T PRK09782        432 PAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPD  508 (987)
T ss_pred             hHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCc
Confidence            222211                            1111   1  33455666666666 8889999988887765  466


Q ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCC---ChHHHHHHHHHH
Q 038516          419 NFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP---DLKCWNALLGGY  495 (708)
Q Consensus       419 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~  495 (708)
                      ......+..++...|++++|...++.+...  +|+...+..+..++.+.|++++|...|+.....   +...+..+....
T Consensus       509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l  586 (987)
T PRK09782        509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQR  586 (987)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence            655444455556899999999999987554  344445567778889999999999999988642   223333333444


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHH
Q 038516          496 SHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       496 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A  574 (708)
                      ...|++++|...+++..+  +.|+...+..+..++.+.|++++|...+++..+  ..|+ ...+..+...+...|++++|
T Consensus       587 ~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        587 YIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             HhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            556999999999999998  478878888888999999999999999999998  4564 67788899999999999999


Q ss_pred             HHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          575 ENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       575 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      ++.++++ ...|.++..+..+..++...|++++|+..++++++++|+++.+....+++.....+++.|.+.+++.-..++
T Consensus       663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            9999998 334357889999999999999999999999999999999999999999999999999999998876655443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=3.3e-21  Score=187.17  Aligned_cols=443  Identities=14%  Similarity=0.092  Sum_probs=242.8

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc-chHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcc
Q 038516          184 WNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ-FSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYS  262 (708)
Q Consensus       184 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  262 (708)
                      ...|..-..+.|++++|.+.-...-..  .|+. ...-.+-..+.+..+.+....--....+. .+.-..+|..+.+.+-
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~k  127 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILK  127 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHH
Confidence            344556666778888887765444332  2222 22222223334444444333222222222 1223455666666666


Q ss_pred             cCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHH-HHHHHcCCCCccchH
Q 038516          263 KCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAA-IISATSALPASAYGK  338 (708)
Q Consensus       263 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~  338 (708)
                      ..|++++|...++.+.+   ..+..|..+..++...|+.+.|...|.+..+   +.|+.....+ +-......|.+.+|.
T Consensus       128 erg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq---lnP~l~ca~s~lgnLlka~Grl~ea~  204 (966)
T KOG4626|consen  128 ERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ---LNPDLYCARSDLGNLLKAEGRLEEAK  204 (966)
T ss_pred             HhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh---cCcchhhhhcchhHHHHhhcccchhH
Confidence            66666666666666654   2445666666666666666666666666653   3454433322 222223355566666


Q ss_pred             HHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCE---eeehhhHHHHhcCCChHHHHHHHHHHhHCCC
Q 038516          339 PLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDI---VLWTEMIIGHSRMGDGECAIKLFCKMCREGL  415 (708)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~  415 (708)
                      .-+.+.+... +.-..+|+.|...+...|+...|...|++...-|+   ..|-.|...|-..+.+++|+..+.+....  
T Consensus       205 ~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--  281 (966)
T KOG4626|consen  205 ACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--  281 (966)
T ss_pred             HHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--
Confidence            6555555443 22244555566666666666666666666554332   34555555666666666666666555432  


Q ss_pred             ccCH-HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHH
Q 038516          416 KCDN-FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNAL  491 (708)
Q Consensus       416 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~l  491 (708)
                      +|+. ..+..+...|...|.++.|...+++..+.. +.-+..|+.|..++-..|++.+|...|++.+   .....+.+.|
T Consensus       282 rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NL  360 (966)
T KOG4626|consen  282 RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNL  360 (966)
T ss_pred             CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHH
Confidence            4443 344444445556666666666666555432 2223456666666666666666666666553   2234455666


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcC
Q 038516          492 LGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAG  569 (708)
Q Consensus       492 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g  569 (708)
                      ...|...|.+++|..+|....+  +.|. ...++.|...|-+.|++++|+..|++.+.  +.|+ ...|+.++..|-..|
T Consensus       361 gni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g  436 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG  436 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence            6666666666666666666665  4454 33455666666666666666666666654  5555 455666666666666


Q ss_pred             CHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038516          570 LLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC  640 (708)
Q Consensus       570 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e  640 (708)
                      +...|.+.+.++ ...|.-.+..+.|...|...|+..+|++.|+.++++.|+.+.+|-.|.-++---.+|.+
T Consensus       437 ~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  437 DVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             hHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence            666666666665 22212345556666666666666666666666666666666666655555444444444

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.91  E-value=7e-21  Score=184.93  Aligned_cols=424  Identities=14%  Similarity=0.117  Sum_probs=330.4

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcC
Q 038516          219 YSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMEN  295 (708)
Q Consensus       219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~  295 (708)
                      ...|..-..+.|++++|++.-..+-..+ +.+....-.+-..+....+.+....--....+   .-..+|..+...+-..
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHh
Confidence            3344555567788888888766554442 23333344444556666666655443333322   3456888899999999


Q ss_pred             CCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHH
Q 038516          296 GNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKV  375 (708)
Q Consensus       296 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  375 (708)
                      |+.++|+.+++.+.+.  .+-....|..+..++...|+.+.|.+.|.+.++.+ |....+.+.+...+...|++++|...
T Consensus       130 g~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln-P~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  130 GQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN-PDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             chHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC-cchhhhhcchhHHHHhhcccchhHHH
Confidence            9999999999999875  33356678888889999999999999998887764 32334445566667778999999888


Q ss_pred             HhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCH-HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCC
Q 038516          376 FMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDN-FALSGALSACADLAILKQGEMIHSQAEKTGHG  451 (708)
Q Consensus       376 ~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  451 (708)
                      +.+..+.   =.+.|+.|...+-..|+...|+..|++..+.  .|+. ..|..+-..+...+.++.|...+....... +
T Consensus       207 YlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-p  283 (966)
T KOG4626|consen  207 YLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-P  283 (966)
T ss_pred             HHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-C
Confidence            8776553   3468999999999999999999999988764  4443 467788888999999999988887766543 3


Q ss_pred             CchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 038516          452 VEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPD-LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLL  527 (708)
Q Consensus       452 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll  527 (708)
                      .....+..+...|...|.+|-|+..|++.+  +|+ ...|+.|..++...|++.+|++.+.+.+.  +.|+ ....+.|.
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLg  361 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLG  361 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHH
Confidence            356677788888999999999999999885  454 56899999999999999999999999988  4666 45688888


Q ss_pred             HHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHH
Q 038516          528 SACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSR  605 (708)
Q Consensus       528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~  605 (708)
                      ..+...|.+++|..+|....+  +.|. ....+.|+..|..+|++++|...++++ ...|.-...+..++..|...|+.+
T Consensus       362 ni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~  439 (966)
T KOG4626|consen  362 NIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVS  439 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHH
Confidence            899999999999999998887  6676 567888999999999999999999887 555334778899999999999999


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          606 MVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       606 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      .|.+.+.+++.++|.-+.++..|+.+|-..|+..+|+.-++...+..+
T Consensus       440 ~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP  487 (966)
T KOG4626|consen  440 AAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP  487 (966)
T ss_pred             HHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence            999999999999999999999999999999999999999888876543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.88  E-value=1e-18  Score=189.49  Aligned_cols=250  Identities=18%  Similarity=0.068  Sum_probs=201.5

Q ss_pred             CCChHHHHHHHHHHhHCC-CccCH-HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHH
Q 038516          397 MGDGECAIKLFCKMCREG-LKCDN-FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAE  474 (708)
Q Consensus       397 ~~~~~~A~~~~~~m~~~g-~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  474 (708)
                      .+++++|.+.|++..+.+ ..|+. ..+..+...+...|++++|...++...+.. +.....+..+...+...|++++|.
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~  385 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAE  385 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHH
Confidence            467889999999988765 33433 456666666778999999999999887653 334567778888899999999999


Q ss_pred             HHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCC
Q 038516          475 SIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHS  550 (708)
Q Consensus       475 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  550 (708)
                      ..|+...   +.+...|..+...+...|++++|+..|++.++.  .|+ ...+..+...+.+.|++++|+..|++..+  
T Consensus       386 ~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--  461 (615)
T TIGR00990       386 EDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--  461 (615)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--
Confidence            9999875   346788999999999999999999999999985  564 55677777789999999999999999987  


Q ss_pred             CCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-HH-------HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516          551 LIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-IE-------LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       551 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      ..|+ ...+..++.++...|++++|.+.++++....|+ ..       .+...+..+...|++++|...++++++++|++
T Consensus       462 ~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~  541 (615)
T TIGR00990       462 NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPEC  541 (615)
T ss_pred             hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc
Confidence            3454 678889999999999999999999997222121 11       12222223444799999999999999999999


Q ss_pred             cchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          622 GTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       622 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ...+..++++|...|++++|++.+++..+.
T Consensus       542 ~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       542 DIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            999999999999999999999999988653

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.87  E-value=1.4e-17  Score=171.16  Aligned_cols=578  Identities=13%  Similarity=0.087  Sum_probs=413.6

Q ss_pred             hHHHHHHhhcCCC--CCcccHHHHHHHHH--hCCCChHHHHHHHHHHHHc--CCCCCcchHHHHHHHhccccchHHHHHH
Q 038516           64 IRDARQVFDEIPK--RSLVSYNALIAAYS--RDHDHAHLTFRLIDQMEFE--CLRPNGLTFTSLAQAVSLLEDQLMGSLL  137 (708)
Q Consensus        64 ~~~A~~~~~~~~~--~~~~~~~~ll~~~~--~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~~~~~~a~~~  137 (708)
                      ++.|.+.|....+  |+-+ .-.+..++.  ..++ +..|+.+|......  ..+||...  .+-..+.+.++.+.|...
T Consensus       146 ~~~A~a~F~~Vl~~sp~Ni-l~LlGkA~i~ynkkd-Y~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a  221 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNI-LALLGKARIAYNKKD-YRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLA  221 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcch-HHHHHHHHHHhcccc-HHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHH
Confidence            5888888887653  3222 122233322  2456 99999999996553  33444432  223445688899999998


Q ss_pred             HHHHHHhCCCCchhHHhHHHHHhHhC---CChhHHHHHhccCC---CCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCC
Q 038516          138 HAQVIKYGSSEDTCVQTSLLGMYSNC---GDFESAKRIFGLIG---DKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSG  211 (708)
Q Consensus       138 ~~~~~~~g~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  211 (708)
                      |...++... -++.++-.|--.-...   ..+..+..++...-   ..|+++.+.|.+.+.-.|+++.++.+...+....
T Consensus       222 ~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t  300 (1018)
T KOG2002|consen  222 FERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT  300 (1018)
T ss_pred             HHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh
Confidence            888888753 2222222222222222   33455555554432   3578899999999999999999999999988653


Q ss_pred             CC--CCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--C-ChhHHH
Q 038516          212 VN--PTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--P-DLVSWN  286 (708)
Q Consensus       212 ~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~  286 (708)
                      ..  .-...|-.+.+++-..|++++|...|.+..+....--+..+-.+..+|.+.|+++.+...|+.+..  | +..+..
T Consensus       301 ~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~  380 (1018)
T KOG2002|consen  301 ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK  380 (1018)
T ss_pred             hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence            11  123558889999999999999999998887764332244566788999999999999999999875  4 445666


Q ss_pred             HHHHHHHcCC----CchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHH----HHHHHCCCCchhHHhH
Q 038516          287 SMIAGYMENG----NGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHA----LVIKTGYDSSVFVGTT  358 (708)
Q Consensus       287 ~li~~~~~~g----~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~  358 (708)
                      .|...|+..+    ..++|..++.+....  .+.|...|..+...+.....+.. ..++.    .+...+.++.+.+.|.
T Consensus       381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNN  457 (1018)
T KOG2002|consen  381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQ--TPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNN  457 (1018)
T ss_pred             HHHhHHHhhhhhhHHHHHHHHHHHHHHhc--ccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHh
Confidence            6667776664    567888888887775  46677788777777665544433 55544    4455676788899999


Q ss_pred             HHHHHHhcCCChhHHHHHhhcCCC-------CEe------eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHH-HHH
Q 038516          359 LLNMYFKNGDAESPQKVFMLIAEK-------DIV------LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFA-LSG  424 (708)
Q Consensus       359 li~~~~~~g~~~~A~~~~~~~~~~-------~~~------~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t-~~~  424 (708)
                      +...+...|++++|...|+.....       +..      +--.+...+-..++++.|.+.|..+.+.  .|.-+. |..
T Consensus       458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylR  535 (1018)
T KOG2002|consen  458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLR  535 (1018)
T ss_pred             HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHH
Confidence            999999999999999999876543       221      1122445556678999999999999876  455543 333


Q ss_pred             HHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-----CCChHHHHHHHHHHHh--
Q 038516          425 ALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-----HPDLKCWNALLGGYSH--  497 (708)
Q Consensus       425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~--  497 (708)
                      ++......+...+|...+....... ..++..++.+...+.+...+..|.+-|..+.     .+|..+.-+|...|.+  
T Consensus       536 l~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l  614 (1018)
T KOG2002|consen  536 LGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL  614 (1018)
T ss_pred             hhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence            3323334567788888888776643 4455566667778888888888888665553     3465555556665442  


Q ss_pred             ----------cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh
Q 038516          498 ----------YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR  567 (708)
Q Consensus       498 ----------~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~  567 (708)
                                .+..++|+++|.+.++.. +-|...-+.+.-.++..|++.+|..+|....+... -...+|-.++.+|..
T Consensus       615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e  692 (1018)
T KOG2002|consen  615 HNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVE  692 (1018)
T ss_pred             cccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHH
Confidence                      245678999999998852 23677778888889999999999999999998632 234568889999999


Q ss_pred             cCCHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc---------
Q 038516          568 AGLLDEAENLIAES---PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT---------  635 (708)
Q Consensus       568 ~g~~~~A~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---------  635 (708)
                      +|+|..|.++|+..   -....+..++..|..++...|.+.+|...+..+..+.|.++.....++-+..+.         
T Consensus       693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k  772 (1018)
T KOG2002|consen  693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEK  772 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccc
Confidence            99999999999887   223358999999999999999999999999999999999999877777665543         


Q ss_pred             ----------CCchHHHHHHHHHhcCCCc
Q 038516          636 ----------GRWDCVAKMRRKMKGSMLG  654 (708)
Q Consensus       636 ----------g~~~eA~~~~~~~~~~~~~  654 (708)
                                +..++|.++|..+...+-+
T Consensus       773 ~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  773 RTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence                      5678889999999776543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.84  E-value=2.5e-17  Score=181.83  Aligned_cols=390  Identities=10%  Similarity=-0.017  Sum_probs=216.6

Q ss_pred             HHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCch
Q 038516          223 LNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGE  299 (708)
Q Consensus       223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~  299 (708)
                      +......|+.++|..++....... +.+...+..+..++...|++++|..+|++..+   .+...+..+...+...|+++
T Consensus        22 ~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~  100 (765)
T PRK10049         22 LQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD  100 (765)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            333444444444444444443311 22233344444445555555555555554322   22334444555555555555


Q ss_pred             HHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhc
Q 038516          300 KAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLI  379 (708)
Q Consensus       300 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  379 (708)
                      +|+..+++..+.  .+.+.. +..+..++...|+.+.|...++.+.+.. |.+..++..+..++...+..+.|...++..
T Consensus       101 eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049        101 EALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             HHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            555555555543  222333 4444555555555555555555555543 334444455566666666666666666655


Q ss_pred             CCCCEe--------eehhhHHHH-----hcCCCh---HHHHHHHHHHhHC-CCccCHH-HHHHHHHHHhCcccHHHHHHH
Q 038516          380 AEKDIV--------LWTEMIIGH-----SRMGDG---ECAIKLFCKMCRE-GLKCDNF-ALSGALSACADLAILKQGEMI  441 (708)
Q Consensus       380 ~~~~~~--------~~~~li~~~-----~~~~~~---~~A~~~~~~m~~~-g~~p~~~-t~~~ll~~~~~~~~~~~a~~~  441 (708)
                      .. ++.        ....++...     ...+++   ++|++.++.+.+. ...|+.. .+.                  
T Consensus       177 ~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~------------------  237 (765)
T PRK10049        177 NL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ------------------  237 (765)
T ss_pred             CC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH------------------
Confidence            44 111        000001000     111112   3344444444322 1111110 000                  


Q ss_pred             HHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCC---h-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 038516          442 HSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPD---L-KCWNALLGGYSHYGMAEEAFMVFEVILEHGLR  517 (708)
Q Consensus       442 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  517 (708)
                                   ......+.++...|++++|+..|+.+.+.+   + ..-..+..+|...|++++|+..|+++.+.  .
T Consensus       238 -------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~  302 (765)
T PRK10049        238 -------------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--P  302 (765)
T ss_pred             -------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--C
Confidence                         000001223345577777777777775321   1 11122456777778888888888877653  2


Q ss_pred             CC-----hHHHHHHHHHHhccCcHHHHHHHHHHhhHCC-----------CCcC---hHHHHHHHHHHHhcCCHHHHHHHH
Q 038516          518 PD-----EITFLSLLSACSHSGLVERGKILWNQMKEHS-----------LIPG---HKHYSCMVSLLSRAGLLDEAENLI  578 (708)
Q Consensus       518 p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~  578 (708)
                      |.     ......+..++...|++++|.++++.+.+..           -.|+   ...+..++..+...|++++|++.+
T Consensus       303 p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l  382 (765)
T PRK10049        303 ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRA  382 (765)
T ss_pred             CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            32     1234455556777788888888877776531           1122   224456677888888888888888


Q ss_pred             HhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          579 AES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       579 ~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +++ ...|.+...+..++..+...|+.++|++.++++++++|++...+..++.++...|++++|..+++.+.+.
T Consensus       383 ~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        383 RELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            887 3333457778888888888888888888888888888888888888888888888888888888887654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.84  E-value=6.1e-19  Score=181.77  Aligned_cols=299  Identities=14%  Similarity=0.116  Sum_probs=212.3

Q ss_pred             HHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccC---HHHHHHHHHHHhCcccHH
Q 038516          363 YFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCD---NFALSGALSACADLAILK  436 (708)
Q Consensus       363 ~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~~~  436 (708)
                      +...|++++|...|.++.+.   +..++..+...+...|++++|..+++.+...+..++   ...+..+...+...|+++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~  124 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLD  124 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHH
Confidence            34455555555555555432   223445555566666666666666666655432221   134555566666667777


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CC------hHHHHHHHHHHHhcCChHHHHHHH
Q 038516          437 QGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PD------LKCWNALLGGYSHYGMAEEAFMVF  508 (708)
Q Consensus       437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~  508 (708)
                      .|..++..+.+.. +.+..++..++.++.+.|++++|.+.++.+.+  |+      ...|..+...+...|++++|...|
T Consensus       125 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  203 (389)
T PRK11788        125 RAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALL  203 (389)
T ss_pred             HHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            7777776665542 34556677777788888888888888877742  21      124566777888999999999999


Q ss_pred             HHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC
Q 038516          509 EVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR  587 (708)
Q Consensus       509 ~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  587 (708)
                      +++.+.  .|+ ...+..+...+.+.|++++|.++++++.+.+.......+..++.+|...|++++|...++++....|+
T Consensus       204 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~  281 (389)
T PRK11788        204 KKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG  281 (389)
T ss_pred             HHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            999885  444 55677777889999999999999999987432222456788999999999999999999998443467


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh--cCCchHHHHHHHHHhcCCCccCCceeEEEe
Q 038516          588 IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA--TGRWDCVAKMRRKMKGSMLGKEPGLSWIEA  664 (708)
Q Consensus       588 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~  664 (708)
                      ...+..++..+...|+.++|...++++++..|++......+...+..  .|+.++|..+++++.+++++..|......+
T Consensus       282 ~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~~c~~c  360 (389)
T PRK11788        282 ADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRYRCRNC  360 (389)
T ss_pred             chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCEECCCC
Confidence            66778888889999999999999999999999987644334333322  569999999999999999999998554433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.84  E-value=1.6e-17  Score=179.32  Aligned_cols=351  Identities=10%  Similarity=-0.019  Sum_probs=268.4

Q ss_pred             cCCChHHHHHHHhccCC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccc
Q 038516          263 KCSDTQTAFSVFTRIEN------PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAY  336 (708)
Q Consensus       263 ~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~  336 (708)
                      +..+++.-.-+|...++      .+......++..+.+.|++++|..+++.....  .+-+...+..+..++...|+++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         17 KQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHH
Confidence            44555555555555443      12233445667788889999999999888875  34444455556666777899999


Q ss_pred             hHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHC
Q 038516          337 GKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCRE  413 (708)
Q Consensus       337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~  413 (708)
                      |...++.+.... |.+...+..+...+...|++++|...+++....   +...+..+...+...|++++|...++.+...
T Consensus        95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~  173 (656)
T PRK15174         95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQE  173 (656)
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHh
Confidence            999999988875 566778888889999999999999999887652   4567788888999999999999999988765


Q ss_pred             CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHH
Q 038516          414 GLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNA  490 (708)
Q Consensus       414 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~  490 (708)
                      ...+.. .+.. +..+...|++++|...++.+.+....++......+...+...|++++|+..|++..   +.+...+..
T Consensus       174 ~P~~~~-a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~  251 (656)
T PRK15174        174 VPPRGD-MIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRS  251 (656)
T ss_pred             CCCCHH-HHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            432222 2222 33467789999999999887766433444455556778889999999999999875   346778888


Q ss_pred             HHHHHHhcCChHH----HHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHH
Q 038516          491 LLGGYSHYGMAEE----AFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSL  564 (708)
Q Consensus       491 li~~~~~~g~~~~----A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~  564 (708)
                      +...+...|++++    |...|+++.+.  .|+ ...+..+...+...|++++|...+++..+  ..|+ ...+..++.+
T Consensus       252 Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~--l~P~~~~a~~~La~~  327 (656)
T PRK15174        252 LGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLA--THPDLPYVRAMYARA  327 (656)
T ss_pred             HHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHH
Confidence            9999999999986    89999999984  565 56688888899999999999999999987  3454 5567778999


Q ss_pred             HHhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516          565 LSRAGLLDEAENLIAESPYSEIRI-ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG  622 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  622 (708)
                      |.+.|++++|...++++....|+. ..+..+..++...|+.++|...++++++.+|++.
T Consensus       328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~  386 (656)
T PRK15174        328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL  386 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence            999999999999999885443554 3344456678889999999999999999999875

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=1.8e-16  Score=171.99  Aligned_cols=439  Identities=9%  Similarity=-0.026  Sum_probs=291.1

Q ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhccc
Q 038516          184 WNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSK  263 (708)
Q Consensus       184 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  263 (708)
                      +......+.+.|++++|+..|++..+  +.|+...|..+..++...|++++|...+...++.. +.+...+..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            34455677788888888888888776  45677778888888888888888888888887764 3356677778888888


Q ss_pred             CCChHHHHHHHhccCCC---ChhHHHHHHHHHHcCCCchHHHHHHHHHHHc-CCCCCCHhHHHHHHHHHcCCCCccchHH
Q 038516          264 CSDTQTAFSVFTRIENP---DLVSWNSMIAGYMENGNGEKAVDMFVALRRM-SLLKPDEYTFAAIISATSALPASAYGKP  339 (708)
Q Consensus       264 ~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~~p~~~t~~~ll~~~~~~~~~~~a~~  339 (708)
                      .|++++|...|..+...   +......++..+..    ..+.......... ....|............    .......
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~  278 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSF----RPKPRPA  278 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHc----cCCcchh
Confidence            88888888776554321   11111111111111    1222222222221 11112222221111111    1111111


Q ss_pred             HHHHHHHHCCCCch-hHHhHHHHHH---HhcCCChhHHHHHhhcCCC------CEeeehhhHHHHhcCCChHHHHHHHHH
Q 038516          340 LHALVIKTGYDSSV-FVGTTLLNMY---FKNGDAESPQKVFMLIAEK------DIVLWTEMIIGHSRMGDGECAIKLFCK  409 (708)
Q Consensus       340 ~~~~~~~~~~~~~~-~~~~~li~~~---~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~~~~  409 (708)
                      -+.....  ..+.. ..+..+...+   ...+++++|.+.|+...+.      ....|+.+...+...|++++|+..|++
T Consensus       279 ~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~k  356 (615)
T TIGR00990       279 GLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSK  356 (615)
T ss_pred             hhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            1111000  01110 1111111111   2346788888888877642      234577778888889999999999999


Q ss_pred             HhHCCCccC-HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCCh
Q 038516          410 MCREGLKCD-NFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDL  485 (708)
Q Consensus       410 m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~  485 (708)
                      ..+.  .|+ ...|..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|++.+   +.+.
T Consensus       357 al~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~  433 (615)
T TIGR00990       357 SIEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI  433 (615)
T ss_pred             HHHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH
Confidence            8865  444 4467777777888999999999999887764 4467788889999999999999999999885   3456


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh--------H
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH--------K  556 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--------~  556 (708)
                      ..+..+...+.+.|++++|+..|++.++.  .|+ ...++.+...+...|++++|++.|++..+.  .|+.        .
T Consensus       434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~  509 (615)
T TIGR00990       434 FSHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLP  509 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHH
Confidence            77888899999999999999999999985  554 667888888999999999999999998874  2321        1


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  635 (708)
                      .++.....+...|++++|.++++++ ...+.+...+..++..+...|++++|...+++++++.+.....+.        .
T Consensus       510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e~~~--------a  581 (615)
T TIGR00990       510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGELVQ--------A  581 (615)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHHHHH--------H
Confidence            1222223344579999999999987 334334567888999999999999999999999999876544222        2


Q ss_pred             CCchHHHHHHHHHhc
Q 038516          636 GRWDCVAKMRRKMKG  650 (708)
Q Consensus       636 g~~~eA~~~~~~~~~  650 (708)
                      ..+.+|.++....++
T Consensus       582 ~~~~~a~~~~~~~~~  596 (615)
T TIGR00990       582 ISYAEATRTQIQVQE  596 (615)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            235566666554443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.82  E-value=4.5e-18  Score=175.38  Aligned_cols=290  Identities=18%  Similarity=0.140  Sum_probs=140.8

Q ss_pred             HHhcCCChhHHHHHHHHHHhCCCCC-CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC---hhhHHHHHHhcccCC
Q 038516          190 GNFKNDKMKEGLSLFGAMVGSGVNP-TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVD---LPLENALLDMYSKCS  265 (708)
Q Consensus       190 ~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g  265 (708)
                      .+...|++++|+..|+++.+.  .| +..++..+...+...|++++|..+++.+...+..++   ..++..+...|.+.|
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            445667777777777777764  33 334566666666667777777777666655321111   123444455555555


Q ss_pred             ChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHH
Q 038516          266 DTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHA  342 (708)
Q Consensus       266 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  342 (708)
                      ++++|..+|+++.+   .+..+++.++..+.+.|++++|.+.++.+.+.                               
T Consensus       122 ~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------------------------  170 (389)
T PRK11788        122 LLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKL-------------------------------  170 (389)
T ss_pred             CHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHh-------------------------------
Confidence            55555555555443   23344445555555555555555555554433                               


Q ss_pred             HHHHHCCCCc----hhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCC
Q 038516          343 LVIKTGYDSS----VFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGL  415 (708)
Q Consensus       343 ~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~  415 (708)
                           +..+.    ...+..+...+.+.|++++|...|+++.+.   +...+..+...+.+.|++++|.+.|+++...+ 
T Consensus       171 -----~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-  244 (389)
T PRK11788        171 -----GGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQD-  244 (389)
T ss_pred             -----cCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-
Confidence                 21110    011223334444444444444444443321   12233344455555555555555555554432 


Q ss_pred             ccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHH
Q 038516          416 KCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLG  493 (708)
Q Consensus       416 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~  493 (708)
                       |+                                 ....+++.++.+|.+.|++++|...++++.  .|+...+..++.
T Consensus       245 -p~---------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~la~  290 (389)
T PRK11788        245 -PE---------------------------------YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLALAQ  290 (389)
T ss_pred             -hh---------------------------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence             11                                 112233344444555555555555554442  234344444555


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc---cCcHHHHHHHHHHhhHCCCCcC
Q 038516          494 GYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH---SGLVERGKILWNQMKEHSLIPG  554 (708)
Q Consensus       494 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~p~  554 (708)
                      .+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.+++..+++++.+.++.|+
T Consensus       291 ~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~  352 (389)
T PRK11788        291 LLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK  352 (389)
T ss_pred             HHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence            555555555555555555542  4555555544443332   3355555555555555444443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.81  E-value=5.1e-15  Score=152.54  Aligned_cols=367  Identities=14%  Similarity=0.080  Sum_probs=184.0

Q ss_pred             CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC-CCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhH
Q 038516          280 PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLL-KPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTT  358 (708)
Q Consensus       280 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  358 (708)
                      .+++..+.|...|.-.|+++.++.+...+....-. ..-...|-.+.+++-..|+++.|..+|-+..+..-......+..
T Consensus       268 ~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~G  347 (1018)
T KOG2002|consen  268 ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVG  347 (1018)
T ss_pred             CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccc
Confidence            34555555555555566666666655555544100 01123355555556666666666665555444331111233344


Q ss_pred             HHHHHHhcCCChhHHHHHhhcCCCC---EeeehhhHHHHhcCC----ChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhC
Q 038516          359 LLNMYFKNGDAESPQKVFMLIAEKD---IVLWTEMIIGHSRMG----DGECAIKLFCKMCREGLKCDNFALSGALSACAD  431 (708)
Q Consensus       359 li~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~  431 (708)
                      |..+|.+.|+++.+...|+.+.+..   ..+...|...|...+    ..+.|..++.+..+.- +.|...|..+-..+..
T Consensus       348 lgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  348 LGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             hhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence            5566666666666666666554432   223333333343332    2344444444443321 2233334333333322


Q ss_pred             cccHHHHHHHHHHH----HHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-------CCCh------HHHHHHHHH
Q 038516          432 LAILKQGEMIHSQA----EKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-------HPDL------KCWNALLGG  494 (708)
Q Consensus       432 ~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~------~~~~~li~~  494 (708)
                       ++...+...+..+    ...+..+.+...|.+.......|++++|...|....       .+|.      .+-..+...
T Consensus       427 -~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl  505 (1018)
T KOG2002|consen  427 -TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARL  505 (1018)
T ss_pred             -cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHH
Confidence             2333334443332    234445666666666666666666666666665542       1121      122223444


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHH
Q 038516          495 YSHYGMAEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDE  573 (708)
Q Consensus       495 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  573 (708)
                      +-..++++.|.+.|......  .|+... |.-++-.....+...+|..++...... ...++..++.++..+.....+..
T Consensus       506 ~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~-d~~np~arsl~G~~~l~k~~~~~  582 (1018)
T KOG2002|consen  506 LEELHDTEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNI-DSSNPNARSLLGNLHLKKSEWKP  582 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhc-ccCCcHHHHHHHHHHHhhhhhcc
Confidence            45556666666666666663  455433 322322222345556666666666552 22233344445556666666666


Q ss_pred             HHHHHHhC---CCCCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 038516          574 AENLIAES---PYSEIRIELWRTLLSTCVA------------KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRW  638 (708)
Q Consensus       574 A~~~~~~~---~~~~~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  638 (708)
                      |.+-+...   +...+|+.....|++.|..            .+..++|.+.|.++++.+|.|.-+-+.+|-+++..|++
T Consensus       583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~  662 (1018)
T KOG2002|consen  583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRF  662 (1018)
T ss_pred             cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCc
Confidence            65533333   1222455555555554432            12355666666666666666666666666666666666


Q ss_pred             hHHHHHHHHHhcC
Q 038516          639 DCVAKMRRKMKGS  651 (708)
Q Consensus       639 ~eA~~~~~~~~~~  651 (708)
                      .+|+.+|.+.++.
T Consensus       663 ~~A~dIFsqVrEa  675 (1018)
T KOG2002|consen  663 SEARDIFSQVREA  675 (1018)
T ss_pred             hHHHHHHHHHHHH
Confidence            6666666666554

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=1.1e-16  Score=172.68  Aligned_cols=352  Identities=10%  Similarity=-0.052  Sum_probs=276.6

Q ss_pred             HcCCCchHHHHHHHHHHHcC-CCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChh
Q 038516          293 MENGNGEKAVDMFVALRRMS-LLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAES  371 (708)
Q Consensus       293 ~~~g~~~~A~~~~~~m~~~~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  371 (708)
                      .+..+|+.-.-+|....++. ....+......++..+.+.|+.+.|..++...+... +-+......++.+....|+++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHH
Confidence            34555555444444332220 112233445667788899999999999999998876 4445556666677788999999


Q ss_pred             HHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccC-HHHHHHHHHHHhCcccHHHHHHHHHHHHH
Q 038516          372 PQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCD-NFALSGALSACADLAILKQGEMIHSQAEK  447 (708)
Q Consensus       372 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  447 (708)
                      |...++.+...   +...+..+...+...|++++|...+++....  .|+ ...+..+...+...|+.++|...+..+..
T Consensus        95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~  172 (656)
T PRK15174         95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQ  172 (656)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            99999998653   5567888889999999999999999999875  444 45677788889999999999999998776


Q ss_pred             hCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHH
Q 038516          448 TGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH----PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EIT  522 (708)
Q Consensus       448 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~  522 (708)
                      ....+ ...+..+ ..+...|++++|...++.+.+    ++...+..+..++...|++++|+..++++.+.  .|+ ...
T Consensus       173 ~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~  248 (656)
T PRK15174        173 EVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAAL  248 (656)
T ss_pred             hCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHH
Confidence            54333 3333333 347889999999999998753    23344555677889999999999999999985  454 566


Q ss_pred             HHHHHHHHhccCcHHH----HHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHH
Q 038516          523 FLSLLSACSHSGLVER----GKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLS  596 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~----a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~  596 (708)
                      +..+...+...|++++    |...|+++.+  ..|+ ...+..++..+.+.|++++|...++++. ..+.+...+..+..
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~  326 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYAR  326 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            7778889999999986    8999999987  4454 6788899999999999999999999983 33345777888889


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      .+...|++++|...++++++.+|+++..+..++.++...|++++|...++++.+...
T Consensus       327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCh
Confidence            999999999999999999999999887777789999999999999999998876544

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.81  E-value=2.8e-15  Score=140.17  Aligned_cols=411  Identities=15%  Similarity=0.147  Sum_probs=270.1

Q ss_pred             HHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHh--ccCCh-------------------------HHHH
Q 038516           16 IQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYG--RCGSI-------------------------RDAR   68 (708)
Q Consensus        16 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~-------------------------~~A~   68 (708)
                      +-....+|....+--+++.|...|.+    .++.+-..|.+.-+  ...++                         +-|.
T Consensus       122 L~kmIS~~EvKDs~ilY~~m~~e~~~----vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAd  197 (625)
T KOG4422|consen  122 LLKMISSREVKDSCILYERMRSENVD----VSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVAD  197 (625)
T ss_pred             HHHHHhhcccchhHHHHHHHHhcCCC----CCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHH
Confidence            33455678888899999999999988    77766666554432  22111                         1222


Q ss_pred             HHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCC
Q 038516           69 QVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSE  148 (708)
Q Consensus        69 ~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~  148 (708)
                      -+|+.. .+...+|.+||+++|+-.. .+.|.+++++..+...+.+..+||.+|.+-+-.    ..++++.+|......|
T Consensus       198 L~~E~~-PKT~et~s~mI~Gl~K~~~-~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~P  271 (625)
T KOG4422|consen  198 LLFETL-PKTDETVSIMIAGLCKFSS-LERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTP  271 (625)
T ss_pred             HHHhhc-CCCchhHHHHHHHHHHHHh-HHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCC
Confidence            222222 2345678888888888777 888888888888887888888888888765432    3377888888888888


Q ss_pred             chhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhc
Q 038516          149 DTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSR  228 (708)
Q Consensus       149 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  228 (708)
                      |..|+|+++++.++.|+++.|.+                           .|++++.+|++-|+.|+..+|..+|...++
T Consensus       272 nl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~r  324 (625)
T KOG4422|consen  272 NLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFKR  324 (625)
T ss_pred             chHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence            88888888888888888777754                           367888999999999999999999999888


Q ss_pred             cCChhH-HHHHHHHHHHh--C--C----CCChhhHHHHHHhcccCCChHHHHHHHhccCC--------CC---hhHHHHH
Q 038516          229 MGNFVC-GKVIHARVIIS--N--T----QVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--------PD---LVSWNSM  288 (708)
Q Consensus       229 ~~~~~~-a~~~~~~~~~~--~--~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~l  288 (708)
                      .++..+ +..++.++...  |  +    +.|...|..-+..|.+..+.+.|.++-.-+..        ++   ..-|..+
T Consensus       325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~  404 (625)
T KOG4422|consen  325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF  404 (625)
T ss_pred             cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence            887754 44444444432  2  1    22344566677777788888888777655543        11   2335566


Q ss_pred             HHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCC
Q 038516          289 IAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGD  368 (708)
Q Consensus       289 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  368 (708)
                      ....++....+.-..+|+.|.-. -+-|+..+...++++....+.++...+++..++..|...+.....-+         
T Consensus       405 ~~licq~es~~~~~~~Y~~lVP~-~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eei---------  474 (625)
T KOG4422|consen  405 FDLICQMESIDVTLKWYEDLVPS-AYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEI---------  474 (625)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccc-eecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHH---------
Confidence            67777888888888888888877 67888888888888888888888888888888877744433322222         


Q ss_pred             ChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHH---HHHHHHHHHhCcccHHHHHHH-HHH
Q 038516          369 AESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNF---ALSGALSACADLAILKQGEMI-HSQ  444 (708)
Q Consensus       369 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~---t~~~ll~~~~~~~~~~~a~~~-~~~  444 (708)
                                                            +..|.+....|+..   -+.....-|+  .++.++.+. -.+
T Consensus       475 --------------------------------------l~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad~~e~~e~~~~R  514 (625)
T KOG4422|consen  475 --------------------------------------LMLLARDKLHPLTPEREQLQVAFAKCA--ADIKEAYESQPIR  514 (625)
T ss_pred             --------------------------------------HHHHhcCCCCCCChHHHHHHHHHHHHH--HHHHHHHHhhHHH
Confidence                                                  22222222222211   1211111111  011111111 112


Q ss_pred             HHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CChHHHH---HHHHHHHhcCChHHHHHHHHHHHHCC
Q 038516          445 AEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----PDLKCWN---ALLGGYSHYGMAEEAFMVFEVILEHG  515 (708)
Q Consensus       445 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~li~~~~~~g~~~~A~~~~~~m~~~g  515 (708)
                      +.  ....+....+...-.+.+.|+.++|.++|.-+.+     |-....|   .++....+.+++..|...++-|...+
T Consensus       515 ~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  515 QR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFN  591 (625)
T ss_pred             HH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Confidence            22  2344555667777778888888888888876631     2223333   45566677788888888888887654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.80  E-value=1.5e-15  Score=164.02  Aligned_cols=436  Identities=10%  Similarity=0.034  Sum_probs=232.8

Q ss_pred             HhHhCCChhHHHHHhccCCCCCcc---cHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcc-hHHHH--HHHHhccCCh
Q 038516          159 MYSNCGDFESAKRIFGLIGDKDAV---AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQF-SYSML--LNACSRMGNF  232 (708)
Q Consensus       159 ~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~l--l~~~~~~~~~  232 (708)
                      ...+.|+++.|+..|++..+.+..   ....++..+...|+.++|+..+++..    .|+.. .+..+  ...+...|++
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdy  118 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRW  118 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCH
Confidence            456778888888887776642222   22366677777788888888877776    33222 22222  4456667788


Q ss_pred             hHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHH
Q 038516          233 VCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNSMIAGYMENGNGEKAVDMFVALRR  310 (708)
Q Consensus       233 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  310 (708)
                      ++|.++++++++.. +.+...+..++..+...++.++|+..++++..  |+...+..++..+...++..+|++.++++.+
T Consensus       119 d~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        119 DQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            88888888777764 33455666667777777777777777777765  3333333333333334455457777777776


Q ss_pred             cCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhh
Q 038516          311 MSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEM  390 (708)
Q Consensus       311 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l  390 (708)
                      .  .+-+...+..+..++.+.|-...|.++...      .|+.++-......     +.+.|.+..+....+.       
T Consensus       198 ~--~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~-------  257 (822)
T PRK14574        198 L--APTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPT-------  257 (822)
T ss_pred             h--CCCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccc-------
Confidence            4  233444555555666666655555544433      1111110000000     0011111111100000       


Q ss_pred             HHHHhcCCC---hHHHHHHHHHHhHC-CCccCH-H----HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHH
Q 038516          391 IIGHSRMGD---GECAIKLFCKMCRE-GLKCDN-F----ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLV  461 (708)
Q Consensus       391 i~~~~~~~~---~~~A~~~~~~m~~~-g~~p~~-~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  461 (708)
                         -....+   .+.|+.-++.+... +-.|.. .    ...-.+-++...++..++...++.+...+.+....+-.++.
T Consensus       258 ---~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a  334 (822)
T PRK14574        258 ---RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA  334 (822)
T ss_pred             ---ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence               001112   23445555554431 112321 1    12233445556666777777777777666555555666677


Q ss_pred             HhhHhcCCHHHHHHHHhhCCCC---------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-----------CC--C
Q 038516          462 DMYAKNGDLRAAESIFSQVLHP---------DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGL-----------RP--D  519 (708)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p--~  519 (708)
                      ++|...+++++|+.+|..+..+         +......|.-+|...+++++|..+++++.+.-.           .|  |
T Consensus       335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d  414 (822)
T PRK14574        335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD  414 (822)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence            7777777777777777665321         122235566666777777777777777765211           11  1


Q ss_pred             hHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHH
Q 038516          520 EIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI-RIELWRTLLST  597 (708)
Q Consensus       520 ~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~  597 (708)
                      -.. +..++..+.-.|+..+|++.++++... -+-+......+.+.+...|++.+|++.++.+....| +..+....+.+
T Consensus       415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~  493 (822)
T PRK14574        415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET  493 (822)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence            112 223344555666666666666666542 122355555666666666666666666655522223 33444455555


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          598 CVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       598 ~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      +...+++++|+...+.+++..|+++.
T Consensus       494 al~l~e~~~A~~~~~~l~~~~Pe~~~  519 (822)
T PRK14574        494 AMALQEWHQMELLTDDVISRSPEDIP  519 (822)
T ss_pred             HHhhhhHHHHHHHHHHHHhhCCCchh
Confidence            55566666666666666666666654

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.79  E-value=3.3e-16  Score=172.93  Aligned_cols=402  Identities=12%  Similarity=0.045  Sum_probs=246.8

Q ss_pred             CchhHHhHHHHHhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCC-CcchHHHHH
Q 038516          148 EDTCVQTSLLGMYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNP-TQFSYSMLL  223 (708)
Q Consensus       148 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll  223 (708)
                      .++....-.+......|+.++|++++.....   .+...+..+...+...|++++|.++|++..+.  .| +......+.
T Consensus        13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la   90 (765)
T PRK10049         13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLI   90 (765)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            3444555666667777888888777776553   23334677777777778888888888777664  34 344455666


Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--C-ChhHHHHHHHHHHcCCCchH
Q 038516          224 NACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--P-DLVSWNSMIAGYMENGNGEK  300 (708)
Q Consensus       224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~  300 (708)
                      ..+...|+.++|...++++++.. +.+.. +..+..++...|+.++|...++++.+  | +...+..+...+...|..++
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence            66677777777777777777663 33444 66677777777777777777777654  3 33445556666666777777


Q ss_pred             HHHHHHHHHHcCCCCCCHhH------HHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCC---hh
Q 038516          301 AVDMFVALRRMSLLKPDEYT------FAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDA---ES  371 (708)
Q Consensus       301 A~~~~~~m~~~~~~~p~~~t------~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~  371 (708)
                      |+..++....    .|+...      ...++....                              .......+++   ++
T Consensus       169 Al~~l~~~~~----~p~~~~~l~~~~~~~~~r~~~------------------------------~~~~~~~~r~~~ad~  214 (765)
T PRK10049        169 ALGAIDDANL----TPAEKRDLEADAAAELVRLSF------------------------------MPTRSEKERYAIADR  214 (765)
T ss_pred             HHHHHHhCCC----CHHHHHHHHHHHHHHHHHhhc------------------------------ccccChhHHHHHHHH
Confidence            7776665432    232100      000011000                              0000111122   44


Q ss_pred             HHHHHhhcCC---CCEeeehh-------hHHHHhcCCChHHHHHHHHHHhHCCCc-cCHHHHHHHHHHHhCcccHHHHHH
Q 038516          372 PQKVFMLIAE---KDIVLWTE-------MIIGHSRMGDGECAIKLFCKMCREGLK-CDNFALSGALSACADLAILKQGEM  440 (708)
Q Consensus       372 A~~~~~~~~~---~~~~~~~~-------li~~~~~~~~~~~A~~~~~~m~~~g~~-p~~~t~~~ll~~~~~~~~~~~a~~  440 (708)
                      |...++.+.+   .++.....       .+..+...|++++|+..|+++.+.+.. |+.... .                
T Consensus       215 Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~-~----------------  277 (765)
T PRK10049        215 ALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQR-W----------------  277 (765)
T ss_pred             HHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHH-H----------------
Confidence            5555554442   12111111       122345667888888888888766422 322111 1                


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516          441 IHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PD-----LKCWNALLGGYSHYGMAEEAFMVFEVILE  513 (708)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~  513 (708)
                                         +..+|...|++++|+..|+++..  |.     ...+..+..++...|++++|..+++++..
T Consensus       278 -------------------la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~  338 (765)
T PRK10049        278 -------------------VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN  338 (765)
T ss_pred             -------------------HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence                               23344455555555555554431  11     12344455566667777777777777665


Q ss_pred             CC-----------CCCCh---HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516          514 HG-----------LRPDE---ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIA  579 (708)
Q Consensus       514 ~g-----------~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  579 (708)
                      ..           -.|+.   ..+..+...+...|+.++|++.++++... .+-+...+..++..+...|++++|++.++
T Consensus       339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~  417 (765)
T PRK10049        339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELK  417 (765)
T ss_pred             cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            41           12332   23445666788899999999999998873 22246778888999999999999999999


Q ss_pred             hCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516          580 ESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT  624 (708)
Q Consensus       580 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  624 (708)
                      ++....| +...+..++..+...|++++|+..++++++..|+++.+
T Consensus       418 ~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~  463 (765)
T PRK10049        418 KAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV  463 (765)
T ss_pred             HHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence            9843334 46777777778888999999999999999999999864

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.78  E-value=6.4e-13  Score=131.12  Aligned_cols=611  Identities=10%  Similarity=0.062  Sum_probs=426.4

Q ss_pred             ccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCC---CCCcccHHHHHHHHHhCCCChH
Q 038516           21 SITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIP---KRSLVSYNALIAAYSRDHDHAH   97 (708)
Q Consensus        21 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~   97 (708)
                      ..+++..|+-++..+.++++.     ++..|-+-...=-..|++..|..+..+=.   .++...|---+    +... .+
T Consensus       263 dl~DikKaR~llKSvretnP~-----hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~cprSeDvWLeai----RLhp-~d  332 (913)
T KOG0495|consen  263 DLEDIKKARLLLKSVRETNPK-----HPPGWIASARLEEVAGKLSVARNLIMKGCEECPRSEDVWLEAI----RLHP-PD  332 (913)
T ss_pred             cHHHHHHHHHHHHHHHhcCCC-----CCchHHHHHHHHHHhhHHHHHHHHHHHHHhhCCchHHHHHHHH----hcCC-hH
Confidence            356788888889888888754     33333333333345677777777665422   22333332211    1222 44


Q ss_pred             HHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCC
Q 038516           98 LTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIG  177 (708)
Q Consensus        98 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  177 (708)
                      .|-.+.......  -|++...  -+.+.-...+...-..+++..++. ++.++..|...+.    ..+.+.|+-++....
T Consensus       333 ~aK~vvA~Avr~--~P~Sv~l--W~kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAVe----lE~~~darilL~rAv  403 (913)
T KOG0495|consen  333 VAKTVVANAVRF--LPTSVRL--WLKAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAVE----LEEPEDARILLERAV  403 (913)
T ss_pred             HHHHHHHHHHHh--CCCChhh--hhhHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHHh----ccChHHHHHHHHHHH
Confidence            454454444432  2333321  122222222333334455544443 3445555544433    344555666666544


Q ss_pred             C---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHH----HhCCCCC
Q 038516          178 D---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVI----ISNTQVD  250 (708)
Q Consensus       178 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~  250 (708)
                      +   .+...|.    ++.+..-++.|..++++.++. ++-+...|.+....=-..|+.+...+++++-+    ..|+..+
T Consensus       404 eccp~s~dLwl----AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~  478 (913)
T KOG0495|consen  404 ECCPQSMDLWL----ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEIN  478 (913)
T ss_pred             HhccchHHHHH----HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeec
Confidence            3   2333343    344556677888888887764 55567777777666677788888777776644    3467777


Q ss_pred             hhhHHHHHHhcccCCChHHHHHHHhccCC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHH
Q 038516          251 LPLENALLDMYSKCSDTQTAFSVFTRIEN------PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAI  324 (708)
Q Consensus       251 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~l  324 (708)
                      ..-|..=...|-..|..--+..+......      .--.+|+.-...|.+.+.++-|..+|....+.  .+-+...|...
T Consensus       479 rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra  556 (913)
T KOG0495|consen  479 RDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRA  556 (913)
T ss_pred             HHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHH
Confidence            77776666667667776666666655542      23357888888888888888888888888764  55566667776


Q ss_pred             HHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChH
Q 038516          325 ISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGE  401 (708)
Q Consensus       325 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~  401 (708)
                      ...--..|..+....++..++..- +.....|......+...|+...|+.++...-+.   +...|-.-+.....+..++
T Consensus       557 ~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~e  635 (913)
T KOG0495|consen  557 AMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELE  635 (913)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHH
Confidence            666677788888888888877663 555666777777788889999999888877553   4456777778888888999


Q ss_pred             HHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC
Q 038516          402 CAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL  481 (708)
Q Consensus       402 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  481 (708)
                      +|..+|.+....  .|+...|.--...---.++.++|.++++...+. ++.-...|..+.+.+-..++++.|...|..-.
T Consensus       636 raR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~  712 (913)
T KOG0495|consen  636 RARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGT  712 (913)
T ss_pred             HHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence            999999887654  566666655555555678889999998777664 34456778888899999999999999998765


Q ss_pred             ---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHH
Q 038516          482 ---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHY  558 (708)
Q Consensus       482 ---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~  558 (708)
                         +..+..|-.|...--+.|++-+|..++++..-.+ +-|...|...++.-.+.|..+.|..++.+..+ ..+.+...|
T Consensus       713 k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ-ecp~sg~LW  790 (913)
T KOG0495|consen  713 KKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ-ECPSSGLLW  790 (913)
T ss_pred             ccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCccchhH
Confidence               3456778888888888999999999999998864 33677788999999999999999999998887 455566778


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 038516          559 SCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRW  638 (708)
Q Consensus       559 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  638 (708)
                      ..-+....+.++-..+.+.+++..   .|+.++..+...+....+++.|..-|++++.++|++..+|..+-..+...|.-
T Consensus       791 aEaI~le~~~~rkTks~DALkkce---~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~e  867 (913)
T KOG0495|consen  791 AEAIWLEPRPQRKTKSIDALKKCE---HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTE  867 (913)
T ss_pred             HHHHHhccCcccchHHHHHHHhcc---CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCH
Confidence            877888888888888888888875   46777888888888889999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCCccCCceeEEEecCeE
Q 038516          639 DCVAKMRRKMKGSMLGKEPGLSWIEAKNNV  668 (708)
Q Consensus       639 ~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (708)
                      ++-.+++.+.....  +.-|..|+-+..++
T Consensus       868 ed~kev~~~c~~~E--P~hG~~W~avSK~i  895 (913)
T KOG0495|consen  868 EDQKEVLKKCETAE--PTHGELWQAVSKDI  895 (913)
T ss_pred             HHHHHHHHHHhccC--CCCCcHHHHHhhhH
Confidence            99999999887643  34566676554443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.76  E-value=3.8e-13  Score=138.12  Aligned_cols=619  Identities=14%  Similarity=0.098  Sum_probs=400.2

Q ss_pred             HHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcC---CCCCcccHHHHHHHHHhC
Q 038516           16 IQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEI---PKRSLVSYNALIAAYSRD   92 (708)
Q Consensus        16 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~ll~~~~~~   92 (708)
                      ..-+.-.|++++|..++.++.+..+.     .+..|..|...|-..|+.+++...+--.   .+.|..-|-.+-.-..+.
T Consensus       146 AN~lfarg~~eeA~~i~~EvIkqdp~-----~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~  220 (895)
T KOG2076|consen  146 ANNLFARGDLEEAEEILMEVIKQDPR-----NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL  220 (895)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCcc-----chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence            33344459999999999999987654     7889999999999999999999887654   344667788888888888


Q ss_pred             CCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhH----HHHHhHhCCChhH
Q 038516           93 HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTS----LLGMYSNCGDFES  168 (708)
Q Consensus        93 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~----li~~~~~~g~~~~  168 (708)
                      |. +..|.-+|.+..+.. +++...+---...|-+.|+...|...+.++.....+.|..-...    .++.|...++-+.
T Consensus       221 ~~-i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~  298 (895)
T KOG2076|consen  221 GN-INQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER  298 (895)
T ss_pred             cc-HHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence            88 999999999998863 33434444455667789999999999999988875444433333    3555667777788


Q ss_pred             HHHHhccCCC-----CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc----------------------chH--
Q 038516          169 AKRIFGLIGD-----KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ----------------------FSY--  219 (708)
Q Consensus       169 A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------------~~~--  219 (708)
                      |.+.++....     -+...+|.++..+.+...++.|......+......+|.                      ..|  
T Consensus       299 a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l  378 (895)
T KOG2076|consen  299 AAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDL  378 (895)
T ss_pred             HHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccc
Confidence            9888876654     25567889999999999999999988888762222211                      111  


Q ss_pred             --HHHHHHHhccCChhHHHHHHHHHHHhCC--CCChhhHHHHHHhcccCCChHHHHHHHhccCC----CChhHHHHHHHH
Q 038516          220 --SMLLNACSRMGNFVCGKVIHARVIISNT--QVDLPLENALLDMYSKCSDTQTAFSVFTRIEN----PDLVSWNSMIAG  291 (708)
Q Consensus       220 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~  291 (708)
                        ..+.-++.+....+....+.........  .-++..+..+.++|...|++.+|..+|..+..    .+...|-.+..+
T Consensus       379 ~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c  458 (895)
T KOG2076|consen  379 RVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARC  458 (895)
T ss_pred             hhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHH
Confidence              1233344566666667777777777763  44567889999999999999999999999876    466789999999


Q ss_pred             HHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHH--------HHCCCCchhHHhHHHHHH
Q 038516          292 YMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVI--------KTGYDSSVFVGTTLLNMY  363 (708)
Q Consensus       292 ~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~  363 (708)
                      |...|.+++|.+.|++....  -+.+...-..|-..+...|+.++|.+.+..+.        ..+..|+..........+
T Consensus       459 ~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l  536 (895)
T KOG2076|consen  459 YMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL  536 (895)
T ss_pred             HHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence            99999999999999999865  23333445556667788999999998888743        233456666666677778


Q ss_pred             HhcCCChhHHHHHhhcCCC--------------------------CEeeehhhHHHHhcCCChHHHHH------HHHHHh
Q 038516          364 FKNGDAESPQKVFMLIAEK--------------------------DIVLWTEMIIGHSRMGDGECAIK------LFCKMC  411 (708)
Q Consensus       364 ~~~g~~~~A~~~~~~~~~~--------------------------~~~~~~~li~~~~~~~~~~~A~~------~~~~m~  411 (708)
                      .+.|+.++-..+-..|..+                          .......++.+-.+.++......      .+.--.
T Consensus       537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e  616 (895)
T KOG2076|consen  537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE  616 (895)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence            8888877754443333211                          00111122223333332211111      111111


Q ss_pred             HCCCccCHH--HHHHHHHHHhCcccHHHHHHHHHHHHHhCC--CCch---hHHHHHHHhhHhcCCHHHHHHHHhhCCCC-
Q 038516          412 REGLKCDNF--ALSGALSACADLAILKQGEMIHSQAEKTGH--GVEM---SVCGSLVDMYAKNGDLRAAESIFSQVLHP-  483 (708)
Q Consensus       412 ~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  483 (708)
                      ..|+.-+..  .+.-++...++.+++++|..+...+.....  .++.   ..-...+.+.+..+++..|.+.+..+... 
T Consensus       617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~  696 (895)
T KOG2076|consen  617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF  696 (895)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            223333332  344556667778888888887776655322  1111   22334555666778888888877776422 


Q ss_pred             ----C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH--HHHHhccCcHHHHHHHHHHhhHCCCCcC
Q 038516          484 ----D---LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSL--LSACSHSGLVERGKILWNQMKEHSLIPG  554 (708)
Q Consensus       484 ----~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~p~  554 (708)
                          +   ...||.....+.+.++-.--.+++..+...  .|+......+  ..-...++.+.-|+..+-+...  ..|+
T Consensus       697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~--~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd  772 (895)
T KOG2076|consen  697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVK--NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPD  772 (895)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--CccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCC
Confidence                2   345665555555555544444444443332  3332122222  2234456777788877776665  3455


Q ss_pred             hHHHHHHH-HHHH----------hcCCHHHHHHHHHhC-CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          555 HKHYSCMV-SLLS----------RAGLLDEAENLIAES-PYSEI--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       555 ~~~~~~l~-~~~~----------~~g~~~~A~~~~~~~-~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      ...++.++ -++.          |.-..-.+..++.+. ....+  ..+++-.++.+|...|=+..|+.+|+++++..|.
T Consensus       773 ~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p~  852 (895)
T KOG2076|consen  773 SPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSPK  852 (895)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCcc
Confidence            33333221 1111          111233455555444 11112  4667788889999999999999999999998765


Q ss_pred             Ccc------------hHHHHHHHHHhcCCchHHHHHHHH
Q 038516          621 DGT------------THILLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       621 ~~~------------~~~~l~~~~~~~g~~~eA~~~~~~  647 (708)
                      +..            +-..|.-+|...|+..-|..+.++
T Consensus       853 ~~~~~~~d~~dLrkeAA~NL~LIY~~SGn~~lArqil~k  891 (895)
T KOG2076|consen  853 DVTDPKEDNYDLRKEAAYNLHLIYKKSGNMQLARQILEK  891 (895)
T ss_pred             ccccccCCcccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence            432            133666689999999988887764

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.75  E-value=6e-14  Score=131.36  Aligned_cols=441  Identities=12%  Similarity=0.078  Sum_probs=258.4

Q ss_pred             cccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhc--cccchHHH-HHHHHHHHHhCCCCchhHHhH
Q 038516           79 LVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVS--LLEDQLMG-SLLHAQVIKYGSSEDTCVQTS  155 (708)
Q Consensus        79 ~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a-~~~~~~~~~~g~~~~~~~~~~  155 (708)
                      +.+-|.|+... .++. .+++.-+|++|+..|+..+...-..|++..+  ...++.-+ ++-|-.|.+.|- .+..+|  
T Consensus       116 V~~E~nL~kmI-S~~E-vKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW--  190 (625)
T KOG4422|consen  116 VETENNLLKMI-SSRE-VKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW--  190 (625)
T ss_pred             hcchhHHHHHH-hhcc-cchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc--
Confidence            44566766544 4677 8899999999999998877776666665544  23333322 233444444442 222233  


Q ss_pred             HHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHH
Q 038516          156 LLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCG  235 (708)
Q Consensus       156 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  235 (708)
                            +.|++.+   ++-+.......+|..||.++|+....+.|.++|++-.....+.+..+||.+|.+-+-.-    .
T Consensus       191 ------K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~  257 (625)
T KOG4422|consen  191 ------KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----G  257 (625)
T ss_pred             ------ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----c
Confidence                  3455444   44444445667899999999999999999999999988888889999999998765332    2


Q ss_pred             HHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 038516          236 KVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLK  315 (708)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  315 (708)
                      +++..+|.+....||..|+|+++.+.++.|+++.|.+.                           |++++.+|++- |+.
T Consensus       258 K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~a---------------------------alqil~EmKei-GVe  309 (625)
T KOG4422|consen  258 KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKA---------------------------ALQILGEMKEI-GVE  309 (625)
T ss_pred             HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHH---------------------------HHHHHHHHHHh-CCC
Confidence            78888999888899999999999888888888777543                           44555566665 666


Q ss_pred             CCHhHHHHHHHHHcCCCCccc-hHHHHHHHHH----HCC----CCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCC---
Q 038516          316 PDEYTFAAIISATSALPASAY-GKPLHALVIK----TGY----DSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD---  383 (708)
Q Consensus       316 p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---  383 (708)
                      |...+|..++...++.++..+ +..+..++..    ..+    +.+...+...+..|.+..+.+-|.++-.-+...+   
T Consensus       310 PsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~  389 (625)
T KOG4422|consen  310 PSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWK  389 (625)
T ss_pred             cchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchh
Confidence            666666666666655555433 2222222222    111    2234445555555555556555555544333210   


Q ss_pred             --------EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchh
Q 038516          384 --------IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMS  455 (708)
Q Consensus       384 --------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  455 (708)
                              ..-|..+....|+....+.-+..|+.|.-+-+-|+..+...++++....+.++-.-+++..+...|......
T Consensus       390 ~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~  469 (625)
T KOG4422|consen  390 FIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSD  469 (625)
T ss_pred             hcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHH
Confidence                    011334555566666777777788888777777888888888888888888888888888777776544333


Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCCCCChH---HHHHHHHHHHhcCChHH-HHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVLHPDLK---CWNALLGGYSHYGMAEE-AFMVFEVILEHGLRPDEITFLSLLSACS  531 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~g~~~~-A~~~~~~m~~~g~~p~~~~~~~ll~~~~  531 (708)
                      ...-++..+++..            +.|+..   -+.....-++.  ++.+ ....-.+|.+..+  .....+.++..+.
T Consensus       470 l~eeil~~L~~~k------------~hp~tp~r~Ql~~~~ak~aa--d~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~  533 (625)
T KOG4422|consen  470 LREEILMLLARDK------------LHPLTPEREQLQVAFAKCAA--DIKEAYESQPIRQRAQDW--PATSLNCIAILLL  533 (625)
T ss_pred             HHHHHHHHHhcCC------------CCCCChHHHHHHHHHHHHHH--HHHHHHHhhHHHHHhccC--ChhHHHHHHHHHH
Confidence            3222222222211            122212   11111111110  1111 1122233333322  2334455555566


Q ss_pred             ccCcHHHHHHHHHHhhHCC-CCc---ChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          532 HSGLVERGKILWNQMKEHS-LIP---GHKHYSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       532 ~~~~~~~a~~~~~~~~~~~-~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      +.|..++|.+++..+.+.+ -.|   ......-+++.-.+.+..-.|...++-|
T Consensus       534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a  587 (625)
T KOG4422|consen  534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA  587 (625)
T ss_pred             HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            7777777777777665442 122   2222223444444555555555555554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.73  E-value=1.9e-13  Score=147.86  Aligned_cols=435  Identities=11%  Similarity=0.009  Sum_probs=296.5

Q ss_pred             HhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHH-H--HHHHhcCCChhHH
Q 038516          124 AVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNS-I--ILGNFKNDKMKEG  200 (708)
Q Consensus       124 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-l--i~~~~~~g~~~~A  200 (708)
                      ...+.|++..|...+++..+........++ .++..+...|+.++|+..++....|+...+.. +  ...+...|++++|
T Consensus        43 i~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A  121 (822)
T PRK14574         43 IRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA  121 (822)
T ss_pred             HHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            456899999999999999888643223444 88888999999999999999988765444443 3  3467788999999


Q ss_pred             HHHHHHHHhCCCCC-CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC
Q 038516          201 LSLFGAMVGSGVNP-TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN  279 (708)
Q Consensus       201 ~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  279 (708)
                      +++|+++.+.  .| +...+..++..+...++.++|.+.+..+.+.  .|+...+..++..+...++..+|+..++++.+
T Consensus       122 iely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        122 LALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            9999999986  44 3455667778888999999999999998876  44555555555556556777679999999876


Q ss_pred             --C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHH
Q 038516          280 --P-DLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVG  356 (708)
Q Consensus       280 --~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  356 (708)
                        | +...+..++.++.+.|-...|+++..+-...  ..+...-  .+-.            ....+.++.+..++..- 
T Consensus       198 ~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~--f~~~~~~--~l~~------------~~~a~~vr~a~~~~~~~-  260 (822)
T PRK14574        198 LAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNL--VSAEHYR--QLER------------DAAAEQVRMAVLPTRSE-  260 (822)
T ss_pred             hCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc--cCHHHHH--HHHH------------HHHHHHHhhcccccccc-
Confidence              4 5667788889999999999999877654322  2222111  1100            00011111111110000 


Q ss_pred             hHHHHHHHhcCCChhHHHHHhhcCC---CCE---e----eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHH
Q 038516          357 TTLLNMYFKNGDAESPQKVFMLIAE---KDI---V----LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGAL  426 (708)
Q Consensus       357 ~~li~~~~~~g~~~~A~~~~~~~~~---~~~---~----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  426 (708)
                         -.   +.--.+.|+.-++.+..   +++   .    +.--.+-++...|++.++++.|+.+...|.+....+-..+.
T Consensus       261 ---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a  334 (822)
T PRK14574        261 ---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA  334 (822)
T ss_pred             ---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence               00   00001112222222211   111   0    11123456677788888888888888777665556777788


Q ss_pred             HHHhCcccHHHHHHHHHHHHHhC-----CCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--C---------------C
Q 038516          427 SACADLAILKQGEMIHSQAEKTG-----HGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--P---------------D  484 (708)
Q Consensus       427 ~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---------------~  484 (708)
                      .+|...+..++|..++..+....     .+++......|.-+|...+++++|..+++.+.+  |               |
T Consensus       335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d  414 (822)
T PRK14574        335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD  414 (822)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence            88888888888888888775532     123344456778888888888888888887732  1               1


Q ss_pred             h-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHH
Q 038516          485 L-KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMV  562 (708)
Q Consensus       485 ~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~  562 (708)
                      - ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|++.++....  +.|+ ..+....+
T Consensus       415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~  491 (822)
T PRK14574        415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQA  491 (822)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHH
Confidence            1 234456777889999999999999998852 33677788888899999999999999977765  4565 56677888


Q ss_pred             HHHHhcCCHHHHHHHHHhCCCCCCCHH
Q 038516          563 SLLSRAGLLDEAENLIAESPYSEIRIE  589 (708)
Q Consensus       563 ~~~~~~g~~~~A~~~~~~~~~~~~~~~  589 (708)
                      ..+...|++.+|..+.+......|+..
T Consensus       492 ~~al~l~e~~~A~~~~~~l~~~~Pe~~  518 (822)
T PRK14574        492 ETAMALQEWHQMELLTDDVISRSPEDI  518 (822)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence            899999999999999877733334433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.72  E-value=3.5e-14  Score=133.68  Aligned_cols=203  Identities=11%  Similarity=0.089  Sum_probs=155.2

Q ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhC---CCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 038516          433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQV---LHPDLKCWNALLGGYSHYGMAEEAFMVFE  509 (708)
Q Consensus       433 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~~~~  509 (708)
                      |++++|.+.+++.....-......|| +.-.+...|++++|+..|-++   +..++.....+...|-...++.+|++++-
T Consensus       504 gd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~  582 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLM  582 (840)
T ss_pred             CcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence            44444444444444332222222222 223455678888888888665   35677777788888999999999999998


Q ss_pred             HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHH
Q 038516          510 VILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIE  589 (708)
Q Consensus       510 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  589 (708)
                      +.... ++.|...+.-|...|-+.|+-.+|.+.+-.-.. -++-+..+...|..-|....-+++|..+|+++....|+..
T Consensus       583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr-yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~  660 (840)
T KOG2003|consen  583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR-YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQS  660 (840)
T ss_pred             Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc-ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHH
Confidence            88774 344667788888899999999999887654433 3445688999999999999999999999999965559999


Q ss_pred             HHHHHHHHH-HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 038516          590 LWRTLLSTC-VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRW  638 (708)
Q Consensus       590 ~~~~l~~~~-~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  638 (708)
                      -|..++..| ++.|++++|...|+...+..|.+...+..|++++...|..
T Consensus       661 kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  661 KWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccch
Confidence            999988877 5689999999999999999999999999999999888743

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.72  E-value=4.7e-13  Score=136.57  Aligned_cols=589  Identities=12%  Similarity=0.051  Sum_probs=318.4

Q ss_pred             HHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCC----CcccHHHHHHHHHhCCCChHHHHHHHHH
Q 038516           30 QIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKR----SLVSYNALIAAYSRDHDHAHLTFRLIDQ  105 (708)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~ll~~~~~~~~~~~~a~~~~~~  105 (708)
                      .++..+...|+.    |+..+|.+||.-||..|+++.|- +|.-|.-+    +-..++.++.++.+.++ .+.+.     
T Consensus        11 nfla~~e~~gi~----PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And-~Enpk-----   79 (1088)
T KOG4318|consen   11 NFLALHEISGIL----PNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAND-AENPK-----   79 (1088)
T ss_pred             hHHHHHHHhcCC----CchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhccccccc-ccCCC-----
Confidence            567788889999    88899999999999999999998 88777633    23356777777666666 44432     


Q ss_pred             HHHcCCCCCcchHHHHHHHhccccchHHHHHH---HHHHHH----hCC-----------------CCchhHHhHHHHHhH
Q 038516          106 MEFECLRPNGLTFTSLAQAVSLLEDQLMGSLL---HAQVIK----YGS-----------------SEDTCVQTSLLGMYS  161 (708)
Q Consensus       106 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~---~~~~~~----~g~-----------------~~~~~~~~~li~~~~  161 (708)
                            .|.+.||+.++.+|...||+..-..+   +..+..    .|+                 -||.   ...+....
T Consensus        80 ------ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda---~n~illlv  150 (1088)
T KOG4318|consen   80 ------EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDA---ENAILLLV  150 (1088)
T ss_pred             ------CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhH---HHHHHHHH
Confidence                  56777777777777777765442222   111111    111                 1111   12222223


Q ss_pred             hCCChhHHHHHhccCC----------------------------------CCCcccHHHHHHHHhcCCChhHHHHHHHHH
Q 038516          162 NCGDFESAKRIFGLIG----------------------------------DKDAVAWNSIILGNFKNDKMKEGLSLFGAM  207 (708)
Q Consensus       162 ~~g~~~~A~~~~~~~~----------------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  207 (708)
                      -.|-++.+++++..++                                  .++..+|.+++.+-.-+|+.+.|..++.+|
T Consensus       151 ~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~em  230 (1088)
T KOG4318|consen  151 LEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEM  230 (1088)
T ss_pred             HHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence            3344444444443332                                  146667777777777788888888888888


Q ss_pred             HhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHH
Q 038516          208 VGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNS  287 (708)
Q Consensus       208 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  287 (708)
                      ++.|++.+..-|..|+-+   .++...++.++.-|.+.|+.|+..|+...+-.+.+.|....+...    . +....+++
T Consensus       231 ke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~----s-q~~hg~tA  302 (1088)
T KOG4318|consen  231 KEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG----S-QLAHGFTA  302 (1088)
T ss_pred             HHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc----c-chhhhhhH
Confidence            888887777777777655   667777777788888888888888877776666654442222111    1 11111222


Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHc-----------CCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCC---CCch
Q 038516          288 MIAGYMENGNGEKAVDMFVALRRM-----------SLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGY---DSSV  353 (708)
Q Consensus       288 li~~~~~~g~~~~A~~~~~~m~~~-----------~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~  353 (708)
                      -+.+-+-.|  ..|.+.++.-...           .|+......|...... ...|.-+.+.++-..+..--.   +.++
T Consensus       303 avrsaa~rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V  379 (1088)
T KOG4318|consen  303 AVRSAACRG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNV  379 (1088)
T ss_pred             HHHHHHhcc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchH
Confidence            222222222  1122222111100           0111111222222211 124444444444444332111   1122


Q ss_pred             hHHhHHHHHHHhcCC----------------------ChhHHHHHhhcCC----------------CCEeee--------
Q 038516          354 FVGTTLLNMYFKNGD----------------------AESPQKVFMLIAE----------------KDIVLW--------  387 (708)
Q Consensus       354 ~~~~~li~~~~~~g~----------------------~~~A~~~~~~~~~----------------~~~~~~--------  387 (708)
                      ..+..++.-|++.-+                      .....+.......                +....|        
T Consensus       380 ~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~ir  459 (1088)
T KOG4318|consen  380 DAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIR  459 (1088)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence            333333333333211                      1111111111111                011111        


Q ss_pred             ---hhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHH--hCCCCchhHHHHHHH
Q 038516          388 ---TEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEK--TGHGVEMSVCGSLVD  462 (708)
Q Consensus       388 ---~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~  462 (708)
                         +.++..++..-+..+++..-+..... .-|  ..|..+++-|+.....+.|..+.+++..  ..+..+...+..+.+
T Consensus       460 di~~ql~l~l~se~n~lK~l~~~ekye~~-lf~--g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d  536 (1088)
T KOG4318|consen  460 DIANQLHLTLNSEYNKLKILCDEEKYEDL-LFA--GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD  536 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh--hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence               22333333333333333322222211 111  4577788888888888888888877653  334456667778888


Q ss_pred             hhHhcCCHHHHHHHHhhCCC-----CC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH---------------
Q 038516          463 MYAKNGDLRAAESIFSQVLH-----PD-LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI---------------  521 (708)
Q Consensus       463 ~~~~~g~~~~A~~~~~~~~~-----~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~---------------  521 (708)
                      .+.+.+....+..++.++.+     |+ ..++--++...+..|+.+...++++-+...|+.-+..               
T Consensus       537 LL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd~s~a~  616 (1088)
T KOG4318|consen  537 LLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDDQSAAQ  616 (1088)
T ss_pred             HHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccchhhhh
Confidence            88888888888888887742     22 3344556667777888888888888877766532111               


Q ss_pred             ---------------HHHHHHHH---------------------HhccCcHHHHHHHHHHhh---HCC---------CCc
Q 038516          522 ---------------TFLSLLSA---------------------CSHSGLVERGKILWNQMK---EHS---------LIP  553 (708)
Q Consensus       522 ---------------~~~~ll~~---------------------~~~~~~~~~a~~~~~~~~---~~~---------~~p  553 (708)
                                     ....+.+.                     |.+.|++.+|.++.+.=-   +.+         +.|
T Consensus       617 ea~e~~~qkyk~~P~~~e~lcrlv~ke~td~~qk~mDls~~iq~f~k~g~~~~a~di~etpG~r~r~~RDr~~de~e~~~  696 (1088)
T KOG4318|consen  617 EAPEPEEQKYKPYPKDLEGLCRLVYKETTDSPQKTMDLSIPIQKFEKLGSCVDAGDITETPGVRCRNGRDRDTDEGEIVP  696 (1088)
T ss_pred             hcchHHHHHhcCChHHHHHHHHHHHhhccccHHHHHhhcchhHHHHhcccccchhhccccCcccccCCCccccccCcccc
Confidence                           00011111                     112222222221111000   000         000


Q ss_pred             ---------ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCCC
Q 038516          554 ---------GHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKR---NSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       554 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~  621 (708)
                               +.....-|+..|.+.|+++.|..++.+++.. |++.....++..+.++.   |+-++..-.+++-+..|..
T Consensus       697 lEll~elt~~lg~~dRLL~sy~~~g~~erA~glwnK~QV~-k~~~~l~~LAsIlr~~n~evdvPe~q~e~ekas~~~~~f  775 (1088)
T KOG4318|consen  697 LELLLELTHELGKNDRLLQSYLEEGRIERASGLWNKDQVS-KSPMKLFHLASILRRMNEEVDVPEIQAETEKASELRTLF  775 (1088)
T ss_pred             HHHHHHHHhHhHHHHHHHHHHHhhhHHHHHHhHHhhCcCC-cchHHHHHHHHHHHhhchhccchhHHHHHHHHHhccccc
Confidence                     0011223677899999999999999999866 77777777777776643   6667777777777766665


Q ss_pred             cch---HHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          622 GTT---HILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       622 ~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      +.+   |.--+.+..+....+.|.+.|.+..++..
T Consensus       776 ~ttt~~~~~~a~~a~q~~qkkaAkk~f~r~eeq~~  810 (1088)
T KOG4318|consen  776 PTTTCYYEGYAFFATQTEQKKAAKKCFERLEEQLT  810 (1088)
T ss_pred             ccchHhhhhhHHHHhhHHHHHHHHHHHHHHHHccC
Confidence            543   33333333333444477888988877643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.71  E-value=1e-12  Score=135.07  Aligned_cols=554  Identities=11%  Similarity=0.039  Sum_probs=245.9

Q ss_pred             CCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCC-CCchhHHhHHHHHhHhCCChhHHHH
Q 038516           93 HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGS-SEDTCVQTSLLGMYSNCGDFESAKR  171 (708)
Q Consensus        93 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~g~~~~A~~  171 (708)
                      |+ .+.|.+++.+..+.. +-+...|-.|-..+-..|+.+.+...+  ++.... +.|...|..+-....+.|.++.|.-
T Consensus       153 g~-~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~--llAAHL~p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  153 GD-LEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFW--LLAAHLNPKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             CC-HHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHH--HHHHhcCCCChHHHHHHHHHHHhcccHHHHHH
Confidence            55 555555555555432 234445555555555555555444332  222221 3344555555555555555555555


Q ss_pred             HhccCCCCCcccHHHH---HHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHH----HHHHHhccCChhHHHHHHHHHHH
Q 038516          172 IFGLIGDKDAVAWNSI---ILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSM----LLNACSRMGNFVCGKVIHARVII  244 (708)
Q Consensus       172 ~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~  244 (708)
                      +|.+..+.++.-|-.+   +..|-+.|+...|.+.|.++.....+.|..-+..    +++.+...++-+.|.+.++....
T Consensus       229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS  308 (895)
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            5555443222222222   2334455555555555555554322111111222    22233334444445555444443


Q ss_pred             h-CCCCChhhHHHHHHhcccCCChHHHHHHHhccCC----CChhHH----------------------H----HHHHHHH
Q 038516          245 S-NTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN----PDLVSW----------------------N----SMIAGYM  293 (708)
Q Consensus       245 ~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~----------------------~----~li~~~~  293 (708)
                      . +-..+...++.++..|.+...++.+......+..    +|..-|                      .    -++-++.
T Consensus       309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~  388 (895)
T KOG2076|consen  309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV  388 (895)
T ss_pred             hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence            2 1223334455555555555555555444433322    222211                      0    0111222


Q ss_pred             cCCCchHHHHHHHHHHHcCC--CCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChh
Q 038516          294 ENGNGEKAVDMFVALRRMSL--LKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAES  371 (708)
Q Consensus       294 ~~g~~~~A~~~~~~m~~~~~--~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  371 (708)
                      .....+....+....... .  ..-+...|.-+..++...|.+..|..++..+......-+..+|-.+..+|...|..+.
T Consensus       389 ~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~  467 (895)
T KOG2076|consen  389 HLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE  467 (895)
T ss_pred             cccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence            222222222222222222 2  1222334455555555555555555555555554433445555555555555555555


Q ss_pred             HHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhH--------CCCccCHHHHHHHHHHHhCcccHHHHHH
Q 038516          372 PQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCR--------EGLKCDNFALSGALSACADLAILKQGEM  440 (708)
Q Consensus       372 A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~--------~g~~p~~~t~~~ll~~~~~~~~~~~a~~  440 (708)
                      |...+..+..-   +....-.|...+.+.|+.++|.+++..+..        .+..|+..........+.+.|+.++-..
T Consensus       468 A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~  547 (895)
T KOG2076|consen  468 AIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN  547 (895)
T ss_pred             HHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            55555554432   222233344455555555555555555321        1123333333333344444555444443


Q ss_pred             HHHHHHHhC-----CCCc-----------------hhHHHHHHHhhHhcCCHHHHHHHHhhC--------CCCCh----H
Q 038516          441 IHSQAEKTG-----HGVE-----------------MSVCGSLVDMYAKNGDLRAAESIFSQV--------LHPDL----K  486 (708)
Q Consensus       441 ~~~~~~~~~-----~~~~-----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~----~  486 (708)
                      +...+....     +-|+                 ......++.+-.+.++......-...-        ..-+.    .
T Consensus       548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe  627 (895)
T KOG2076|consen  548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE  627 (895)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence            333333211     1010                 000001111111111111111000000        00011    1


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CChH--HH-HHHHHHHhccCcHHHHHHHHHHhhHC-CC--CcC-hHH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLR--PDEI--TF-LSLLSACSHSGLVERGKILWNQMKEH-SL--IPG-HKH  557 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~--~~-~~ll~~~~~~~~~~~a~~~~~~~~~~-~~--~p~-~~~  557 (708)
                      .+.-++.++++.+++++|+.+...+......  ++..  .+ ...+.++...+++..|...++.|... +.  .|. ...
T Consensus       628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l  707 (895)
T KOG2076|consen  628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL  707 (895)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            2345677888999999999998888875322  2221  22 33455677888999999998888765 22  222 233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-------------
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAESPYSEIRI--ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG-------------  622 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-------------  622 (708)
                      |+...+.+.+.|+---=.+++..+...+++.  ......+......+.+.-|...+-++....|++|             
T Consensus       708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~  787 (895)
T KOG2076|consen  708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL  787 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence            4433333333333222222222221111111  0000011112223334444444444444444443             


Q ss_pred             ---------------------------------chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          623 ---------------------------------TTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       623 ---------------------------------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                                                       .+...+|++|...|-..=|..++++..+-
T Consensus       788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~  849 (895)
T KOG2076|consen  788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV  849 (895)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence                                             34678888888888888899999888654

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.69  E-value=5.5e-11  Score=117.78  Aligned_cols=511  Identities=11%  Similarity=0.071  Sum_probs=391.7

Q ss_pred             HHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCC
Q 038516           98 LTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIG  177 (708)
Q Consensus        98 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  177 (708)
                      .=.+++++..+.  -|+...   |=++.....+.+.|.-++....+.- +.+..    |.-+|++..-++.|..+++...
T Consensus       364 ~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvecc-p~s~d----LwlAlarLetYenAkkvLNkaR  433 (913)
T KOG0495|consen  364 NKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVECC-PQSMD----LWLALARLETYENAKKVLNKAR  433 (913)
T ss_pred             HHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHhc-cchHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            334566666554  344442   2234445566666777777766542 33333    3345566677888888887665


Q ss_pred             C---CCcccHHHHHHHHhcCCChhHHHHHHHH----HHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCC-
Q 038516          178 D---KDAVAWNSIILGNFKNDKMKEGLSLFGA----MVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQV-  249 (708)
Q Consensus       178 ~---~~~~~~~~li~~~~~~g~~~~A~~~~~~----m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-  249 (708)
                      +   .+...|.+-...--.+|+.+...+++.+    +...|+..+...|..=...|-..|..-.+..+....+..|+.. 
T Consensus       434 e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEee  513 (913)
T KOG0495|consen  434 EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEE  513 (913)
T ss_pred             hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccc
Confidence            4   4777787777766778888888887764    4567899999999999999999999999999999998888654 


Q ss_pred             -ChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHH
Q 038516          250 -DLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAII  325 (708)
Q Consensus       250 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll  325 (708)
                       -..+|+.-...|.+.+.++-|+.+|....+   .+...|...+..--..|..++-..+|++....  .+-....|....
T Consensus       514 d~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~a  591 (913)
T KOG0495|consen  514 DRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYA  591 (913)
T ss_pred             hhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHH
Confidence             346888889999999999999999998876   45567777777667789999999999999975  454455555555


Q ss_pred             HHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC--CCEeeehhhHHHHhcCCChHHH
Q 038516          326 SATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE--KDIVLWTEMIIGHSRMGDGECA  403 (708)
Q Consensus       326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A  403 (708)
                      ...-..|++..|..++..+.+.. +.+..+|.+-+...+...+++.|+.+|.....  +....|..-+...--.++.++|
T Consensus       592 ke~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA  670 (913)
T KOG0495|consen  592 KEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEA  670 (913)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHH
Confidence            66667799999999999998886 55888999999999999999999999998765  3555666666666667899999


Q ss_pred             HHHHHHHhHCCCccCH-HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-
Q 038516          404 IKLFCKMCREGLKCDN-FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-  481 (708)
Q Consensus       404 ~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-  481 (708)
                      ++++++.++.  -|+. ..|..+-+.+.+.++++.|...|..=.+. ++..+..+-.|...-.+.|.+-.|..+|+... 
T Consensus       671 ~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarl  747 (913)
T KOG0495|consen  671 LRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARL  747 (913)
T ss_pred             HHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh
Confidence            9999988875  4554 46666667778888888888776543322 34566777788888889999999999999874 


Q ss_pred             --CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHH
Q 038516          482 --HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYS  559 (708)
Q Consensus       482 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~  559 (708)
                        +.|...|-..|+.-.+.|+.+.|..+..++++. ++.+...|.--|...-+.++-......+++     ..-|+++.-
T Consensus       748 kNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVll  821 (913)
T KOG0495|consen  748 KNPKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLL  821 (913)
T ss_pred             cCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHH
Confidence              457889999999999999999999999999886 344566677777766666664444444443     334566677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516          560 CMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN  630 (708)
Q Consensus       560 ~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  630 (708)
                      .+...+....++++|.+.|.+.. ..+...+.|..+...+..+|.-+.-..++.+...-+|.....|.....
T Consensus       822 aia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK  893 (913)
T KOG0495|consen  822 AIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSK  893 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhh
Confidence            78899999999999999999983 333457889999999999999999999999999999999887776653

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.64  E-value=1.3e-13  Score=129.95  Aligned_cols=454  Identities=15%  Similarity=0.124  Sum_probs=285.7

Q ss_pred             HHhccCChhHHHHHHHHHHHhCCCCChhhH-HHHHHhcccCCChHHHHHHHhccCC--CC------hhHHHHHHHHHHcC
Q 038516          225 ACSRMGNFVCGKVIHARVIISNTQVDLPLE-NALLDMYSKCSDTQTAFSVFTRIEN--PD------LVSWNSMIAGYMEN  295 (708)
Q Consensus       225 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~li~~~~~~  295 (708)
                      .|.......+|...++-+++...-|+.... -.+-+.+.+...+.+|++.++....  |+      +...+.+.-.+.+.
T Consensus       210 qy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~  289 (840)
T KOG2003|consen  210 QYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQA  289 (840)
T ss_pred             HhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEec
Confidence            333444455666666666666555554432 2344566677777777776654432  21      22344445556777


Q ss_pred             CCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCC------------CchhHHhHHH---
Q 038516          296 GNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYD------------SSVFVGTTLL---  360 (708)
Q Consensus       296 g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~~li---  360 (708)
                      |+++.|+..|+...+.   .|+..+-..++-++...|+.+...+.|..|+.....            |+....+..+   
T Consensus       290 gqy~dainsfdh~m~~---~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd  366 (840)
T KOG2003|consen  290 GQYDDAINSFDHCMEE---APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND  366 (840)
T ss_pred             ccchhhHhhHHHHHHh---CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence            7888888777776654   577766666666666677777777777777654322            2222222221   


Q ss_pred             --HHHHhcC--CChhHHHHHhhcC----CCCEee---e----------h--------hhHHHHhcCCChHHHHHHHHHHh
Q 038516          361 --NMYFKNG--DAESPQKVFMLIA----EKDIVL---W----------T--------EMIIGHSRMGDGECAIKLFCKMC  411 (708)
Q Consensus       361 --~~~~~~g--~~~~A~~~~~~~~----~~~~~~---~----------~--------~li~~~~~~~~~~~A~~~~~~m~  411 (708)
                        .-+-+..  +.+++.-.-..+.    .++...   |          .        .-...|.++|+++.|+++++-+.
T Consensus       367 ~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~  446 (840)
T KOG2003|consen  367 HLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFE  446 (840)
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHH
Confidence              1111111  1122211111121    221100   0          0        11235788999999999998887


Q ss_pred             HCCCccCHHHHHH--HHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHH
Q 038516          412 REGLKCDNFALSG--ALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWN  489 (708)
Q Consensus       412 ~~g~~p~~~t~~~--ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  489 (708)
                      +..-+.-...-+.  .+.......++..|.++-+...... .-++.....-...-...|++++|.+.|++.+..|...-.
T Consensus       447 ~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e  525 (840)
T KOG2003|consen  447 KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE  525 (840)
T ss_pred             hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH
Confidence            6543333322222  2222222345666666655444322 112222222223344679999999999999988776655


Q ss_pred             HHHH---HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHH
Q 038516          490 ALLG---GYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLL  565 (708)
Q Consensus       490 ~li~---~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~  565 (708)
                      +|..   .+-..|+.++|++.|-++..- +..+...+..+...|....+..+|++++.....  +.| |+...+.|.+.|
T Consensus       526 alfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dly  602 (840)
T KOG2003|consen  526 ALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLY  602 (840)
T ss_pred             HHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHh
Confidence            5443   567889999999999998764 344677777888889999999999999988765  445 588899999999


Q ss_pred             HhcCCHHHHHHHHHh-CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 038516          566 SRAGLLDEAENLIAE-SPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKM  644 (708)
Q Consensus       566 ~~~g~~~~A~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~  644 (708)
                      -+.|+-..|.+..-+ ...-|.+.++...|...|....=.+++..+++++.-+.|+...-...++.++.+.|+|..|.++
T Consensus       603 dqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~  682 (840)
T KOG2003|consen  603 DQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDL  682 (840)
T ss_pred             hcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHH
Confidence            999999999987544 4555467888888888888888899999999999999998776555778888899999999999


Q ss_pred             HHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHH
Q 038516          645 RRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLR  692 (708)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~  692 (708)
                      ++...++ ++....|-..      ..-++||..-.+..|-..+|+++.
T Consensus       683 yk~~hrk-fpedldclkf------lvri~~dlgl~d~key~~klek~e  723 (840)
T KOG2003|consen  683 YKDIHRK-FPEDLDCLKF------LVRIAGDLGLKDAKEYADKLEKAE  723 (840)
T ss_pred             HHHHHHh-CccchHHHHH------HHHHhccccchhHHHHHHHHHHHH
Confidence            9988654 2222222110      011456656666666666665543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.63  E-value=2.9e-12  Score=130.99  Aligned_cols=522  Identities=12%  Similarity=0.038  Sum_probs=275.0

Q ss_pred             HHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCC
Q 038516          101 RLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKD  180 (708)
Q Consensus       101 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  180 (708)
                      .++-.|...|+.|+..||.+++..|+..|+.+.|- +|..|.-...+....+++.++.+....++.+.+.       .|.
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            45566667777777777777777777777777776 7777766666677777777777777777666554       566


Q ss_pred             cccHHHHHHHHhcCCChhHHHHHHHH-HH-------hCCCCCCcchHH--------------HHHHHHhccCChhHHHHH
Q 038516          181 AVAWNSIILGNFKNDKMKEGLSLFGA-MV-------GSGVNPTQFSYS--------------MLLNACSRMGNFVCGKVI  238 (708)
Q Consensus       181 ~~~~~~li~~~~~~g~~~~A~~~~~~-m~-------~~g~~p~~~~~~--------------~ll~~~~~~~~~~~a~~~  238 (708)
                      ..+|+.|..+|...||... ++..++ |.       ..|+.--..-|-              .++......|-++.+.++
T Consensus        83 aDtyt~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl  161 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL  161 (1088)
T ss_pred             hhHHHHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence            6677777777777776544 222221 21       112111111111              111112222333333333


Q ss_pred             HHHHHHhCCCCChhhHHHHHHhcc-cCCChHHHHHHHhccCC-CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC
Q 038516          239 HARVIISNTQVDLPLENALLDMYS-KCSDTQTAFSVFTRIEN-PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKP  316 (708)
Q Consensus       239 ~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p  316 (708)
                      +..+-..... .+...  .++-+. ....+++-..+.....+ ++..+|..++.+-..+|+.+.|..++.+|++. |.+.
T Consensus       162 l~~~Pvsa~~-~p~~v--fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~-gfpi  237 (1088)
T KOG4318|consen  162 LAKVPVSAWN-APFQV--FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEK-GFPI  237 (1088)
T ss_pred             HhhCCccccc-chHHH--HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHc-CCCc
Confidence            3222111000 00001  122221 12233444444444444 88889999999888999999999999999998 8888


Q ss_pred             CHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhc
Q 038516          317 DEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSR  396 (708)
Q Consensus       317 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~  396 (708)
                      +.+-|-.++-+   .++...+..+++-|...|+.|+..|+...+..+.+.|....+.    +..+ ....+++-+..-.-
T Consensus       238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~----e~sq-~~hg~tAavrsaa~  309 (1088)
T KOG4318|consen  238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE----EGSQ-LAHGFTAAVRSAAC  309 (1088)
T ss_pred             ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc----cccc-hhhhhhHHHHHHHh
Confidence            88888877765   7788888888888999999999888887777766654422111    1111 11111111111111


Q ss_pred             CCChHHHHHHH------------HHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCC---chhHHHHHH
Q 038516          397 MGDGECAIKLF------------CKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGV---EMSVCGSLV  461 (708)
Q Consensus       397 ~~~~~~A~~~~------------~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~  461 (708)
                      .|  ..|.+.+            ++..-.|+.-....|...... ..+|.-++..++...+...-...   ++..+..+ 
T Consensus       310 rg--~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~-  385 (1088)
T KOG4318|consen  310 RG--LLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGAL-  385 (1088)
T ss_pred             cc--cHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHHHHH-
Confidence            22  2222222            111112222222222222211 12344444444444332211111   11122222 


Q ss_pred             HhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHh---cCChHHHHHHHHHH------------HH----CCCCC----
Q 038516          462 DMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSH---YGMAEEAFMVFEVI------------LE----HGLRP----  518 (708)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~m------------~~----~g~~p----  518 (708)
                                 +.+.|.++..+...+......+...   ..+..+..+++...            ..    +-..|    
T Consensus       386 -----------lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~  454 (1088)
T KOG4318|consen  386 -----------LRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLI  454 (1088)
T ss_pred             -----------HHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhh
Confidence                       2233333322211111111111111   11111111111111            10    00111    


Q ss_pred             ---ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC----CCHHHH
Q 038516          519 ---DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSE----IRIELW  591 (708)
Q Consensus       519 ---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~  591 (708)
                         -...-+.++..|++.-+..+++..-+.....-+   ...|..|++.+....+.++|..+.++.....    .+...+
T Consensus       455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m  531 (1088)
T KOG4318|consen  455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLM  531 (1088)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhH
Confidence               011233455556665555666544444333211   1568899999999999999999998873221    234456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEE
Q 038516          592 RTLLSTCVAKRNSRMVIQAAEQVLRL---DPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWI  662 (708)
Q Consensus       592 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~  662 (708)
                      ..+.....+.+....+..++++..+.   .|.-......+.+-....|+.+.-.++++-+.+.|+.. .|.-|.
T Consensus       532 ~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e-tgPl~~  604 (1088)
T KOG4318|consen  532 TSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE-TGPLWM  604 (1088)
T ss_pred             HHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh-cccceE
Confidence            77777788888888888888876652   34344555666667777899999999999998888876 354443

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.61  E-value=1.9e-15  Score=147.13  Aligned_cols=215  Identities=18%  Similarity=0.195  Sum_probs=112.1

Q ss_pred             CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHH
Q 038516          431 DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVF  508 (708)
Q Consensus       431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~  508 (708)
                      ..++.+.|...++.+...+. .++..+..++.. ...+++++|.+++....  .++...+..++..+.+.++++++.+++
T Consensus        56 ~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l  133 (280)
T PF13429_consen   56 SLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELL  133 (280)
T ss_dssp             ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred             cccccccccccccccccccc-cccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHH
Confidence            34444444444444443332 134445556665 57788888888877663  356667778888889999999999999


Q ss_pred             HHHHHCC-CCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-C
Q 038516          509 EVILEHG-LRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYS-E  585 (708)
Q Consensus       509 ~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~  585 (708)
                      +++.... .+++...|..+...+.+.|+.++|++.+++..+  ..|+ ......++..+...|+.+++.++++..... +
T Consensus       134 ~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~  211 (280)
T PF13429_consen  134 EKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP  211 (280)
T ss_dssp             HHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred             HHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence            9987643 234556677777788999999999999999987  5565 677888999999999999988887766221 3


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      .++..|..+..++...|+.++|...++++++.+|+|+.....++.++...|+.++|.++++++.
T Consensus       212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~  275 (280)
T PF13429_consen  212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQAL  275 (280)
T ss_dssp             TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT----------------
T ss_pred             CHHHHHHHHHHHhccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            5677899999999999999999999999999999999999999999999999999999988664

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.61  E-value=2.4e-12  Score=122.97  Aligned_cols=413  Identities=13%  Similarity=0.069  Sum_probs=240.5

Q ss_pred             HHHHHhcCCChhHHHHHHHHHHhCCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC-hhhHHHHHHhcccC
Q 038516          187 IILGNFKNDKMKEGLSLFGAMVGSGVNPT-QFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVD-LPLENALLDMYSKC  264 (708)
Q Consensus       187 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  264 (708)
                      ..+-|.++|++++|++.|...++  ..|+ ...|.....+|...|+|+++.+.-...++.+  |+ +..+..-..++-..
T Consensus       121 ~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E~l  196 (606)
T KOG0547|consen  121 KGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHEQL  196 (606)
T ss_pred             hhhhhhhcccHHHHHHHHHHHHh--cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHHhh
Confidence            44567889999999999999988  4777 6778888888889999998887777666543  32 34555556677777


Q ss_pred             CChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHH---------HHH-cCCCCCCHhHHHHHHHHHcCCCCc
Q 038516          265 SDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVA---------LRR-MSLLKPDEYTFAAIISATSALPAS  334 (708)
Q Consensus       265 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~---------m~~-~~~~~p~~~t~~~ll~~~~~~~~~  334 (708)
                      |++++|+.=         +|-.++...+....-.--+.+++++         +.. ...+.|+.....+.+..+...-..
T Consensus       197 g~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~  267 (606)
T KOG0547|consen  197 GKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKP  267 (606)
T ss_pred             ccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccc
Confidence            888777531         1222233322222211122222221         221 223456655555444443221100


Q ss_pred             cchHHHHHHHHHHCCCCchhHHhHHHHHHHh--cC---CChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHH
Q 038516          335 AYGKPLHALVIKTGYDSSVFVGTTLLNMYFK--NG---DAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCK  409 (708)
Q Consensus       335 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~  409 (708)
                                  ....+.......+..++..  .+   .+..|...+.+-...      ......  .+..+.-++..-+
T Consensus       268 ------------~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~------~~~~~~--~n~~d~~le~~A~  327 (606)
T KOG0547|consen  268 ------------LFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLG------SESSLS--VNEIDAELEYMAE  327 (606)
T ss_pred             ------------cccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhh------hhhhcc--ccccchhHHHHHH
Confidence                        0000000011111111100  01   122222222111000      000000  0000000000000


Q ss_pred             -HhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCCh
Q 038516          410 -MCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDL  485 (708)
Q Consensus       410 -m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~  485 (708)
                       +.-.|      ||      +.-.|+.-.+..-++..++....+ ...|--+..+|....+.++....|+...   +.|+
T Consensus       328 al~~~g------tF------~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~  394 (606)
T KOG0547|consen  328 ALLLRG------TF------HFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP  394 (606)
T ss_pred             HHHHhh------hh------hhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC
Confidence             00000      11      111344444444444444433221 1224455566777777778888887664   4567


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL  564 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  564 (708)
                      .+|..-...+.-.+++++|..=|++.+.  +.|+ ...|..+--+..+.+++++++..|++.++ .++-.++.|+.....
T Consensus       395 dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk-kFP~~~Evy~~fAei  471 (606)
T KOG0547|consen  395 DVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK-KFPNCPEVYNLFAEI  471 (606)
T ss_pred             chhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCCchHHHHHHHH
Confidence            7788878888888899999999999988  4664 45566666667788899999999999887 454457888889999


Q ss_pred             HHhcCCHHHHHHHHHhCCCCCCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516          565 LSRAGLLDEAENLIAESPYSEIR---------IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  635 (708)
                      +..++++++|.+.|+.+-...|.         +.+-..++-.-. .+|+..|+.++.++++++|....+|..|+.+...+
T Consensus       472 LtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~  550 (606)
T KOG0547|consen  472 LTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQR  550 (606)
T ss_pred             HhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHH
Confidence            99999999999999887211122         222222222222 48999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHh
Q 038516          636 GRWDCVAKMRRKMK  649 (708)
Q Consensus       636 g~~~eA~~~~~~~~  649 (708)
                      |+.++|+++|++..
T Consensus       551 ~~i~eAielFEksa  564 (606)
T KOG0547|consen  551 GKIDEAIELFEKSA  564 (606)
T ss_pred             hhHHHHHHHHHHHH
Confidence            99999999999764

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=3.3e-12  Score=121.28  Aligned_cols=214  Identities=14%  Similarity=0.178  Sum_probs=177.7

Q ss_pred             chhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHH
Q 038516          453 EMSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLS  528 (708)
Q Consensus       453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~  528 (708)
                      -+.+...+.+.|+-.++.++|...|++.++   .....|+.+.+-|...++...|++-++.+++-  .| |...|-.|.+
T Consensus       329 R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--~p~DyRAWYGLGQ  406 (559)
T KOG1155|consen  329 RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--NPRDYRAWYGLGQ  406 (559)
T ss_pred             CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--CchhHHHHhhhhH
Confidence            345666778888888999999999998864   34568999999999999999999999999994  55 7888999999


Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM  606 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~  606 (708)
                      +|.-.+...-|+-+|++..+  ++| |...|.+|+++|.+.++.++|.+.|.++ .....+...+..|+..+.+.++.++
T Consensus       407 aYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~e  484 (559)
T KOG1155|consen  407 AYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNE  484 (559)
T ss_pred             HHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHH
Confidence            99999999999999999987  666 5889999999999999999999999998 2222466889999999999999999


Q ss_pred             HHHHHHHHHh-------cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCc
Q 038516          607 VIQAAEQVLR-------LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHP  679 (708)
Q Consensus       607 a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  679 (708)
                      |.+++++-++       .+|+...+..-|+.-+.+.+++++|..+......-                          .+
T Consensus       485 Aa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--------------------------~~  538 (559)
T KOG1155|consen  485 AAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--------------------------ET  538 (559)
T ss_pred             HHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--------------------------Cc
Confidence            9999999987       44555555667888899999999999877655432                          45


Q ss_pred             chHHHHHHHHHHHHHHH
Q 038516          680 KIDDAQAELHRLRGNMR  696 (708)
Q Consensus       680 ~~~~~~~~l~~l~~~~~  696 (708)
                      ..+|..+.++++++.+.
T Consensus       539 e~eeak~LlReir~~~~  555 (559)
T KOG1155|consen  539 ECEEAKALLREIRKIQA  555 (559)
T ss_pred             hHHHHHHHHHHHHHhcC
Confidence            77778888877776655

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=5.8e-13  Score=132.58  Aligned_cols=273  Identities=13%  Similarity=0.060  Sum_probs=136.4

Q ss_pred             ChhHHHHHhhcCCC--CE-eeehhhHHHHhcCCChHHHHHHHHHHhHCC-Cc-cCHHHHHHHHHHHhCcccHHHHHHHHH
Q 038516          369 AESPQKVFMLIAEK--DI-VLWTEMIIGHSRMGDGECAIKLFCKMCREG-LK-CDNFALSGALSACADLAILKQGEMIHS  443 (708)
Q Consensus       369 ~~~A~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~-p~~~t~~~ll~~~~~~~~~~~a~~~~~  443 (708)
                      ..+|...|..+...  |+ .....+..+|...+++++|.++|+.+.+.. .. -+..+|.+.|..+-+.    -+...+.
T Consensus       335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~La  410 (638)
T KOG1126|consen  335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYLA  410 (638)
T ss_pred             HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHHH
Confidence            44555555554332  22 222335556666666666666666665431 11 1233455444433211    1111111


Q ss_pred             -HHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 038516          444 -QAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--P-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD  519 (708)
Q Consensus       444 -~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  519 (708)
                       .+.+. -+..+.+|.++.++|.-+++.+.|++.|++.++  | ...+|+.+..-+.....+|.|...|+..+.  +.|+
T Consensus       411 q~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~r  487 (638)
T KOG1126|consen  411 QDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDPR  487 (638)
T ss_pred             HHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCch
Confidence             11111 134455566666666666666666666665542  2 334555555555555566666666665554  2332


Q ss_pred             -hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 038516          520 -EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS  596 (708)
Q Consensus       520 -~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~  596 (708)
                       ...|..+...|.+.++++.|+-.|+++.+  +.|. ......++..+.+.|+.++|+.+++++ ...+.++..--.-+.
T Consensus       488 hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~  565 (638)
T KOG1126|consen  488 HYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRAS  565 (638)
T ss_pred             hhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHH
Confidence             22344444455666666666666665554  4443 333444555555666666666666655 222123333333334


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      .+...+++++|.+.++++.++-|++...+..+|.+|.+.|+.+.|..-|-.+.+
T Consensus       566 il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~  619 (638)
T KOG1126|consen  566 ILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALD  619 (638)
T ss_pred             HHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhc
Confidence            444555666666666666666666666666666666666666666555554443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.54  E-value=8e-11  Score=112.10  Aligned_cols=285  Identities=13%  Similarity=0.109  Sum_probs=202.8

Q ss_pred             HhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC-C-CchhHHHHHHHhhHhcCCHH
Q 038516          394 HSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGH-G-VEMSVCGSLVDMYAKNGDLR  471 (708)
Q Consensus       394 ~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~  471 (708)
                      +......+++..-.......|.+-....-+....+.-...++++|..+|+.+.+... . .|..+|+.++-.-..+.++.
T Consensus       237 ~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs  316 (559)
T KOG1155|consen  237 YQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLS  316 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHH
Confidence            333344555555555555555444443333333334456667777777777666521 1 14455555442222211111


Q ss_pred             -HHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhhHC
Q 038516          472 -AAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE-ITFLSLLSACSHSGLVERGKILWNQMKEH  549 (708)
Q Consensus       472 -~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  549 (708)
                       -|..++ .+-+--+.|..++.+-|.-.++.++|+.+|++.++  +.|.. ..|+.+..-|...++...|.+-++.+++ 
T Consensus       317 ~LA~~v~-~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd-  392 (559)
T KOG1155|consen  317 YLAQNVS-NIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD-  392 (559)
T ss_pred             HHHHHHH-HhccCCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh-
Confidence             122222 22223344555666777788899999999999999  46765 4466666689999999999999999997 


Q ss_pred             CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516          550 SLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL  627 (708)
Q Consensus       550 ~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  627 (708)
                       +.| |-..|-.|+++|.-.+...-|+-+|+++ ..+|.|+..|..|+.+|.+.++.++|+..|++++.....+..++..
T Consensus       393 -i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~  471 (559)
T KOG1155|consen  393 -INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVR  471 (559)
T ss_pred             -cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHH
Confidence             555 5778999999999999999999999999 5565689999999999999999999999999999998888899999


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhhhc
Q 038516          628 LSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDE  702 (708)
Q Consensus       628 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  702 (708)
                      |+++|.+.++.++|...+++..+.-.          ..        | ...|++.++...|.+-..++++..++.
T Consensus       472 LakLye~l~d~~eAa~~yek~v~~~~----------~e--------g-~~~~~t~ka~~fLA~~f~k~~~~~~As  527 (559)
T KOG1155|consen  472 LAKLYEELKDLNEAAQYYEKYVEVSE----------LE--------G-EIDDETIKARLFLAEYFKKMKDFDEAS  527 (559)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHH----------hh--------c-ccchHHHHHHHHHHHHHHhhcchHHHH
Confidence            99999999999999999987765210          00        0 015778888888999888888876553

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.54  E-value=5.1e-10  Score=106.89  Aligned_cols=482  Identities=12%  Similarity=0.118  Sum_probs=325.8

Q ss_pred             HhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcc-hHHHHHHHHhccCChhH
Q 038516          159 MYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQF-SYSMLLNACSRMGNFVC  234 (708)
Q Consensus       159 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~  234 (708)
                      .=...+++..|.++|+....   .+...|--.+..-.++.....|..++++....  -|-+. .|..-+..=-..|++..
T Consensus        82 wEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~g  159 (677)
T KOG1915|consen   82 WEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAG  159 (677)
T ss_pred             HHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHH
Confidence            33445666777777765543   45666766777777777788888887777653  33222 12222223345677788


Q ss_pred             HHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccC--CCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcC
Q 038516          235 GKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIE--NPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMS  312 (708)
Q Consensus       235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  312 (708)
                      |+++|+.-.+.  .|+...|++.++.=.+...++.|..++++..  .|++.+|--...-=.++|+...|..+|....+.-
T Consensus       160 aRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~  237 (677)
T KOG1915|consen  160 ARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFL  237 (677)
T ss_pred             HHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence            88888776653  6788888888888888888888888887754  4788888777777777888888888887776541


Q ss_pred             CC-CCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCc--hhHHhHHHHHHHhcCCChhHHHHH--------hhcCC
Q 038516          313 LL-KPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSS--VFVGTTLLNMYFKNGDAESPQKVF--------MLIAE  381 (708)
Q Consensus       313 ~~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~~~--------~~~~~  381 (708)
                      |- .-+...|.+....-.+...++.|..++...++.- |.+  ...|..+...--+-|+.....+..        +.+..
T Consensus       238 ~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~  316 (677)
T KOG1915|consen  238 GDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS  316 (677)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence            11 1112233333333345566777777887777653 322  445555555555666655554433        23333


Q ss_pred             CC---EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCH-------HHHHHHHHHH---hCcccHHHHHHHHHHHHHh
Q 038516          382 KD---IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDN-------FALSGALSAC---ADLAILKQGEMIHSQAEKT  448 (708)
Q Consensus       382 ~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-------~t~~~ll~~~---~~~~~~~~a~~~~~~~~~~  448 (708)
                      .|   -.+|-..+..--..|+.+...++|++.+.. ++|-.       ..|.-+--+|   ....+.+.+.++++...+ 
T Consensus       317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-  394 (677)
T KOG1915|consen  317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-  394 (677)
T ss_pred             hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence            33   445555666667789999999999998865 45532       1222221122   356788999999998887 


Q ss_pred             CCCCchhHHHHHHHhh----HhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChH
Q 038516          449 GHGVEMSVCGSLVDMY----AKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEI  521 (708)
Q Consensus       449 ~~~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~  521 (708)
                      -++....++..+--+|    .++.++..|.+++...+  -|...+|...|..-.+.++++.+..++++.++-  .| |..
T Consensus       395 lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~  472 (677)
T KOG1915|consen  395 LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCY  472 (677)
T ss_pred             hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhH
Confidence            3455566666554444    47889999999999875  588889999999999999999999999999995  55 667


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHH-
Q 038516          522 TFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCV-  599 (708)
Q Consensus       522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-  599 (708)
                      +|.-....-...|+.+.|..+|+-+++. .+......|-+.++.=...|.++.|..+++++....+...+|.++...-. 
T Consensus       473 ~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s  552 (677)
T KOG1915|consen  473 AWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEAS  552 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcc
Confidence            7887777778899999999999999986 33334556777778888999999999999998655566678888876544 


Q ss_pred             ----hcC-----------CHHHHHHHHHHHHhc----CCCCcc--hHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          600 ----AKR-----------NSRMVIQAAEQVLRL----DPEDGT--THILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       600 ----~~~-----------~~~~a~~~~~~~~~~----~p~~~~--~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                          ..+           +...|..+|+++...    .|....  .+..+-+.-...|...+...+-.+|.
T Consensus       553 ~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~mP  623 (677)
T KOG1915|consen  553 ASEGQEDEDLAELEITDENIKRARKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKMP  623 (677)
T ss_pred             ccccccccchhhhhcchhHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhcc
Confidence                234           567888889888753    343322  22233334444576666666666653

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=2e-11  Score=110.86  Aligned_cols=182  Identities=13%  Similarity=0.054  Sum_probs=133.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH-HHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH
Q 038516          488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLS-LLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS  566 (708)
Q Consensus       488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  566 (708)
                      |..|...+....+.+.|..++.+..+.  .|+.+--++ +.......|+++.|.+.|+...+.+..--..+...|..+|.
T Consensus       183 yCELAq~~~~~~~~d~A~~~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~  260 (389)
T COG2956         183 YCELAQQALASSDVDRARELLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYA  260 (389)
T ss_pred             HHHHHHHHhhhhhHHHHHHHHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence            445556666677888888888888875  454443333 34477788888888888888887654444667778888888


Q ss_pred             hcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh--cCCchHHHHH
Q 038516          567 RAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA--TGRWDCVAKM  644 (708)
Q Consensus       567 ~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~--~g~~~eA~~~  644 (708)
                      ..|+.++...++.++....+.......+........-.+.|...+.+-+...|+-...|..+.--...  .|++.+....
T Consensus       261 ~lg~~~~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~  340 (389)
T COG2956         261 QLGKPAEGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDL  340 (389)
T ss_pred             HhCCHHHHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHH
Confidence            88999888888888744445666666665555555667778888888888888866655544433333  4678888999


Q ss_pred             HHHHhcCCCccCCceeEEEecCeEEEE
Q 038516          645 RRKMKGSMLGKEPGLSWIEAKNNVHVF  671 (708)
Q Consensus       645 ~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (708)
                      ++.|....++..|.+.+..++...|.|
T Consensus       341 lr~mvge~l~~~~~YRC~~CGF~a~~l  367 (389)
T COG2956         341 LRDMVGEQLRRKPRYRCQNCGFTAHTL  367 (389)
T ss_pred             HHHHHHHHHhhcCCceecccCCcceee
Confidence            999999999999999999999888877

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.51  E-value=1.2e-12  Score=130.25  Aligned_cols=280  Identities=13%  Similarity=0.063  Sum_probs=214.5

Q ss_pred             CccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC------CEeeehhhHHHHhcCCChHHHHHH
Q 038516          333 ASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK------DIVLWTEMIIGHSRMGDGECAIKL  406 (708)
Q Consensus       333 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~A~~~  406 (708)
                      +..+|...|..+. ..+.-+..+...+..+|+..+++++|+++|+.+.+.      +...|++.+-.+.+.    -++..
T Consensus       334 ~~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY  408 (638)
T ss_pred             HHHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence            3456666666633 333444577788889999999999999999988763      556666665443321    12222


Q ss_pred             H-HHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCCh
Q 038516          407 F-CKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDL  485 (708)
Q Consensus       407 ~-~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  485 (708)
                      + +++.+. -+-.+.+|..+-..|+-+++.+.|.+.|+...... +-....|+.+..=+.....+|.|..-|+..+..|.
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            2 222222 24456789999999999999999999999887653 22567888888888889999999999999987776


Q ss_pred             HHHHH---HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHH
Q 038516          486 KCWNA---LLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSC  560 (708)
Q Consensus       486 ~~~~~---li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~  560 (708)
                      ..||+   +...|.+.++++.|+-.|+++.+  +.| |.+....+...+.+.|+.++|+.+++++...  .| ++..-..
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--d~kn~l~~~~  562 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--DPKNPLCKYH  562 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--CCCCchhHHH
Confidence            66555   77889999999999999999998  567 4566777777899999999999999999874  34 2344444


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          561 MVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      .+..+...+++++|+..++++.. .|.+..++..++..|.+.|+.+.|+.-+--+.+++|....
T Consensus       563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            67888999999999999999833 3235677888889999999999999999999999998654

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.50  E-value=2e-11  Score=124.37  Aligned_cols=275  Identities=11%  Similarity=0.026  Sum_probs=160.9

Q ss_pred             cCCChhHHHHHhhcCCC--CEee-ehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHH--HHHHHHhCcccHHHHHH
Q 038516          366 NGDAESPQKVFMLIAEK--DIVL-WTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALS--GALSACADLAILKQGEM  440 (708)
Q Consensus       366 ~g~~~~A~~~~~~~~~~--~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~  440 (708)
                      .|+++.|++.+....+.  ++.. |........+.|+++.|...+.++.+.  .|+.....  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            57777777776655442  1222 222233336677777777777777653  44443222  22345566777777777


Q ss_pred             HHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCC---Ch--------HHHHHHHHHHHhcCChHHHHHHHH
Q 038516          441 IHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP---DL--------KCWNALLGGYSHYGMAEEAFMVFE  509 (708)
Q Consensus       441 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--------~~~~~li~~~~~~g~~~~A~~~~~  509 (708)
                      .++.+.+.. +.++.....+...|.+.|++++|.+++..+.+.   +.        .+|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            777766654 445666667777777777777777777666421   11        123333333334444555555555


Q ss_pred             HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCH
Q 038516          510 VILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRI  588 (708)
Q Consensus       510 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~  588 (708)
                      .+.+. .+.+......+..++...|+.++|.+.+++..+  ..|+....  ++.+....++.+++++.+++.. ..|.++
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~  328 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTP  328 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence            55433 233555566666677777777777777776665  23333222  2223334467777777776662 232345


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      ..+..++..|...+++++|...++++++.+|++.. +..|+.++.+.|+.++|.+.+++..
T Consensus       329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l  388 (398)
T PRK10747        329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDGL  388 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55666667777777777777777777777776544 5567777777777777777766543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.50  E-value=1.2e-10  Score=113.77  Aligned_cols=197  Identities=14%  Similarity=0.091  Sum_probs=133.8

Q ss_pred             CCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 038516          451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLL  527 (708)
Q Consensus       451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  527 (708)
                      +..+.+|-++.-.|.-.|+.++|++.|.+...   .-...|-.+..+|+-.|..++|+..+..+.+. ++-....+..+.
T Consensus       309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlg  387 (611)
T KOG1173|consen  309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLG  387 (611)
T ss_pred             CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHH
Confidence            33445555666666666777777777776542   23456777777777777888887777777664 222333344444


Q ss_pred             HHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCC-CHHHHHHHHHHH
Q 038516          528 SACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESP-------YSEI-RIELWRTLLSTC  598 (708)
Q Consensus       528 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~~l~~~~  598 (708)
                      --|.+.+..+.|.++|.....  +-| |+..++-++-.....+.+.+|..+|+...       .+.+ -..+++.|+.+|
T Consensus       388 mey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~  465 (611)
T KOG1173|consen  388 MEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAY  465 (611)
T ss_pred             HHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHH
Confidence            456677777888888777764  555 35566666666667777777777776651       1101 233467777778


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          599 VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       599 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      ++.+.+++|+..+++++.+.|.++++|..+|-+|...|+++.|.+.|.+...
T Consensus       466 Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  466 RKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            8888888888888888888888888888888888888888888888887654

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.50  E-value=3.2e-10  Score=108.25  Aligned_cols=422  Identities=13%  Similarity=0.113  Sum_probs=280.6

Q ss_pred             ccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCH-hHHHHHHHHHcCCCCccch
Q 038516          262 SKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDE-YTFAAIISATSALPASAYG  337 (708)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a  337 (708)
                      ..++++..|.++|++...   .++..|--.+..=.++.++..|..+++.....   -|.+ ..|-.-+..-...|++..|
T Consensus        84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~---lPRVdqlWyKY~ymEE~LgNi~ga  160 (677)
T KOG1915|consen   84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI---LPRVDQLWYKYIYMEEMLGNIAGA  160 (677)
T ss_pred             HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh---cchHHHHHHHHHHHHHHhcccHHH
Confidence            344556666666666654   45555666666666666777777777666643   2332 2233333333455677777


Q ss_pred             HHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcC--CCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCC
Q 038516          338 KPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIA--EKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGL  415 (708)
Q Consensus       338 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~  415 (708)
                      .++|+.-.+.  .|+...|++.|+.-.+-..++.|..++++..  .|++.+|-....---++|....|..+|....+.  
T Consensus       161 RqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~--  236 (677)
T KOG1915|consen  161 RQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEF--  236 (677)
T ss_pred             HHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--
Confidence            7777665543  5777777777777777777777777777643  355566655555556677777777777666542  


Q ss_pred             ccCHH----HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCC-chhHHHHHHHhhHhcCCHHHHHHHH--------hhCC-
Q 038516          416 KCDNF----ALSGALSACADLAILKQGEMIHSQAEKTGHGV-EMSVCGSLVDMYAKNGDLRAAESIF--------SQVL-  481 (708)
Q Consensus       416 ~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~--------~~~~-  481 (708)
                      -.|..    .|.++..--..+..++.|..+++...+.-.+. ....|..+...--+-|+........        +.++ 
T Consensus       237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~  316 (677)
T KOG1915|consen  237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVS  316 (677)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHH
Confidence            11222    23333333345677888888888777653211 2345555554444556644443332        2222 


Q ss_pred             --CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-------HHHHHHHHH---hccCcHHHHHHHHHHhhHC
Q 038516          482 --HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-------TFLSLLSAC---SHSGLVERGKILWNQMKEH  549 (708)
Q Consensus       482 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------~~~~ll~~~---~~~~~~~~a~~~~~~~~~~  549 (708)
                        +-|-.+|--.+..-...|+.+...++|++++.. ++|-..       .|..+=.+|   ....+++.+.++|+..++ 
T Consensus       317 ~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-  394 (677)
T KOG1915|consen  317 KNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-  394 (677)
T ss_pred             hCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence              246778888888888899999999999999986 666321       122222222   357899999999999987 


Q ss_pred             CCCcC-hHHHHHH----HHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516          550 SLIPG-HKHYSCM----VSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT  624 (708)
Q Consensus       550 ~~~p~-~~~~~~l----~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  624 (708)
                       +.|. ..+|.-+    +....|+.++..|.+++..+-..-|...++...+..-.+.++.|....+|++.++.+|.+..+
T Consensus       395 -lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~  473 (677)
T KOG1915|consen  395 -LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYA  473 (677)
T ss_pred             -hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHH
Confidence             5665 3444433    344458899999999998884444888999999999899999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 038516          625 HILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRK  697 (708)
Q Consensus       625 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  697 (708)
                      |...+.+-...|+++.|+-+|..+.++..--.|..-|-    ....|-.....++.++.+|+.|-+..+-++-
T Consensus       474 W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwk----aYIdFEi~~~E~ekaR~LYerlL~rt~h~kv  542 (677)
T KOG1915|consen  474 WSKYAELETSLGDTDRARAIFELAISQPALDMPELLWK----AYIDFEIEEGEFEKARALYERLLDRTQHVKV  542 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHH----HhhhhhhhcchHHHHHHHHHHHHHhcccchH
Confidence            99999999999999999999999988765555544432    1114444555677788888877665554443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.48  E-value=2e-11  Score=124.46  Aligned_cols=255  Identities=10%  Similarity=-0.025  Sum_probs=155.2

Q ss_pred             cCCCCccchHHHHHHHHHHCCCCchhHHh--HHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHH
Q 038516          329 SALPASAYGKPLHALVIKTGYDSSVFVGT--TLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECA  403 (708)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A  403 (708)
                      ...|+.+.+...+..+.+.  .|+.....  .....+...|+++.|...++.+.+.   +......+...|.+.|++++|
T Consensus       129 ~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a  206 (398)
T PRK10747        129 QQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSL  206 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHH
Confidence            4444555555555444432  23322111  2234455555555555555554432   333444555566666666666


Q ss_pred             HHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--
Q 038516          404 IKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--  481 (708)
Q Consensus       404 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--  481 (708)
                      .+++..+.+.+..++. ....+-                           ...+..++.......+.+...++++.++  
T Consensus       207 ~~~l~~l~k~~~~~~~-~~~~l~---------------------------~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~  258 (398)
T PRK10747        207 LDILPSMAKAHVGDEE-HRAMLE---------------------------QQAWIGLMDQAMADQGSEGLKRWWKNQSRK  258 (398)
T ss_pred             HHHHHHHHHcCCCCHH-HHHHHH---------------------------HHHHHHHHHHHHHhcCHHHHHHHHHhCCHH
Confidence            6666666655433211 111000                           0011122222233344556666666664  


Q ss_pred             -CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHH
Q 038516          482 -HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSC  560 (708)
Q Consensus       482 -~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~  560 (708)
                       +.++.....+..++...|+.++|.+++++..+.  .||....  ++.+....++.+++.+..+...+. .+-|...+.+
T Consensus       259 ~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~-~P~~~~l~l~  333 (398)
T PRK10747        259 TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ-HGDTPLLWST  333 (398)
T ss_pred             HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhh-CCCCHHHHHH
Confidence             356777788888888888888888888888873  4554222  233444558888888888888762 2234556778


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516          561 MVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD  618 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  618 (708)
                      ++..+.+.|++++|.+.|+.+....|+...+..+...+...|+.++|..++++.+.+.
T Consensus       334 lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        334 LGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            8888889999999999988885555888888888888888999999999998887754

>TIGR00540 hemY_coli hemY protein

Probab=99.48  E-value=3.2e-11  Score=123.66  Aligned_cols=249  Identities=13%  Similarity=0.025  Sum_probs=132.1

Q ss_pred             cCCChHHHHHHHHHHhHCCCccCHH-HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHH
Q 038516          396 RMGDGECAIKLFCKMCREGLKCDNF-ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAE  474 (708)
Q Consensus       396 ~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  474 (708)
                      ..|+++.|.+.+.+..+.  .|+.. .+.....+....|+.+.+.+++....+..-.+...+.......+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            356666666666555443  23322 222333444555666666666666554331222223333456666677777777


Q ss_pred             HHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH-HHHH---HHhccCcHHHHHHHHHHhh
Q 038516          475 SIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFL-SLLS---ACSHSGLVERGKILWNQMK  547 (708)
Q Consensus       475 ~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~---~~~~~~~~~~a~~~~~~~~  547 (708)
                      +.++.+.   +.+...+..+...+.+.|++++|.++++++.+.++. +...+. .-..   .....+..+++.+.+..+.
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            7776664   224555666666777777777777777777766533 222221 1111   1122222222233333333


Q ss_pred             HCC---CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516          548 EHS---LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIEL---WRTLLSTCVAKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       548 ~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      +..   .+.+...+..++..+...|+.++|.+.+++.....|+...   ...........++.+.+.+.+++.++..|++
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~  332 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK  332 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence            321   1124556666667777777777777777666332233321   1111112223456666777777777777777


Q ss_pred             c--chHHHHHHHHHhcCCchHHHHHHHH
Q 038516          622 G--TTHILLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       622 ~--~~~~~l~~~~~~~g~~~eA~~~~~~  647 (708)
                      +  .....+|+++.+.|+|++|.+.|++
T Consensus       333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~  360 (409)
T TIGR00540       333 PKCCINRALGQLLMKHGEFIEAADAFKN  360 (409)
T ss_pred             hhHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence            7  6666777777777777777777764

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.47  E-value=1.1e-10  Score=111.78  Aligned_cols=212  Identities=14%  Similarity=0.103  Sum_probs=165.1

Q ss_pred             HhcCCHHHHHHHHhhCCC--C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHH
Q 038516          465 AKNGDLRAAESIFSQVLH--P-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGK  540 (708)
Q Consensus       465 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~  540 (708)
                      .-+|+.-.|..-|+..+.  | +...|--+...|.+..+.++-...|.+..+.  .| |..+|..-.....-.+++++|.
T Consensus       337 fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~  414 (606)
T KOG0547|consen  337 FLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAI  414 (606)
T ss_pred             hhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHH
Confidence            346777888888877752  2 3334777778899999999999999999884  44 5677877777777888999999


Q ss_pred             HHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516          541 ILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD  618 (708)
Q Consensus       541 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  618 (708)
                      .-|++.++  +.|+ ...|-.+.-++.|.+++++++..|++...+.| -+++++.....+..+++++.|++.|+++++++
T Consensus       415 aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE  492 (606)
T KOG0547|consen  415 ADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE  492 (606)
T ss_pred             HHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence            99999887  6665 56677788888899999999999988844434 47889999999999999999999999999999


Q ss_pred             CC------CcchHHHHHHHHHh-cCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHH
Q 038516          619 PE------DGTTHILLSNLYAA-TGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRL  691 (708)
Q Consensus       619 p~------~~~~~~~l~~~~~~-~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l  691 (708)
                      |.      ++.++++-+-+..+ .++++.|..+++++.+.                          .|+.+..+.-+.++
T Consensus       493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~--------------------------Dpkce~A~~tlaq~  546 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIEL--------------------------DPKCEQAYETLAQF  546 (606)
T ss_pred             cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHcc--------------------------CchHHHHHHHHHHH
Confidence            99      76666644433322 38888899888877653                          67888888888888


Q ss_pred             HHHHHhhhhhccccc
Q 038516          692 RGNMRKLVTDEFGKE  706 (708)
Q Consensus       692 ~~~~~~~~~~~~~~~  706 (708)
                      .-++++..++|..+|
T Consensus       547 ~lQ~~~i~eAielFE  561 (606)
T KOG0547|consen  547 ELQRGKIDEAIELFE  561 (606)
T ss_pred             HHHHhhHHHHHHHHH
Confidence            888887777776554

>TIGR00540 hemY_coli hemY protein

Probab=99.46  E-value=1.1e-10  Score=119.87  Aligned_cols=140  Identities=12%  Similarity=0.026  Sum_probs=77.6

Q ss_pred             HHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH---HHHHHHHhccCcHHHHHHHHH
Q 038516          471 RAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITF---LSLLSACSHSGLVERGKILWN  544 (708)
Q Consensus       471 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~  544 (708)
                      +...+.++..+.   .+...+..+...+...|+.++|.+++++..+.  .||....   ..........++.        
T Consensus       246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~--------  315 (409)
T TIGR00540       246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDN--------  315 (409)
T ss_pred             HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCCh--------
Confidence            334444444432   36677777777888888888888888888774  4444221   1111111222333        


Q ss_pred             HhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhcCC
Q 038516          545 QMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRI--ELWRTLLSTCVAKRNSRMVIQAAE--QVLRLDP  619 (708)
Q Consensus       545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p  619 (708)
                                                 +.+.+.+++. ...|.++  .+..++++.|.+.|++++|.+.++  .+++..|
T Consensus       316 ---------------------------~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p  368 (409)
T TIGR00540       316 ---------------------------EKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQL  368 (409)
T ss_pred             ---------------------------HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCC
Confidence                                       3334444333 1111233  455566666666666666666666  4555666


Q ss_pred             CCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          620 EDGTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       620 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      ++.. +.+++.++.+.|+.++|.+++++.
T Consensus       369 ~~~~-~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       369 DAND-LAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             CHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5544 446677777777777776666654

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.45  E-value=4.2e-13  Score=130.69  Aligned_cols=252  Identities=15%  Similarity=0.152  Sum_probs=105.3

Q ss_pred             HHHHHHHhcCCChhHHHHHhhc-CC----CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCc
Q 038516          358 TLLNMYFKNGDAESPQKVFMLI-AE----KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADL  432 (708)
Q Consensus       358 ~li~~~~~~g~~~~A~~~~~~~-~~----~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~  432 (708)
                      .+...+.+.|++++|.++++.. ..    .+...|..+.......++++.|...++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            3455566666666666666432 11    24445555555555666677777777766654322 23334444444 566


Q ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-----CCChHHHHHHHHHHHhcCChHHHHHH
Q 038516          433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-----HPDLKCWNALLGGYSHYGMAEEAFMV  507 (708)
Q Consensus       433 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~  507 (708)
                      +++++|..+.....+.  .+++..+..++..+.+.|+++++.++++.+.     +++...|..+...+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6667776666544332  2455556677777888888888888887752     45777888888999999999999999


Q ss_pred             HHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CC
Q 038516          508 FEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY-SE  585 (708)
Q Consensus       508 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~  585 (708)
                      +++.++.  .|+ ......++..+...|+.+++.++++...+.. +.+...+..++.+|...|+.++|+..+++... .+
T Consensus       169 ~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p  245 (280)
T PF13429_consen  169 YRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNP  245 (280)
T ss_dssp             HHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccc
Confidence            9999995  675 6667788889999999999888888887743 44556778889999999999999999998833 33


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516          586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLR  616 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  616 (708)
                      .|+.++..+..++...|+.++|..+.+++++
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            4788888889999999999999999888765

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.43  E-value=4.7e-11  Score=113.60  Aligned_cols=198  Identities=17%  Similarity=0.105  Sum_probs=166.2

Q ss_pred             CchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516          452 VEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS  528 (708)
Q Consensus       452 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  528 (708)
                      .....+..+...+...|++++|.+.+++..   +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~  107 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT  107 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            345667778889999999999999998875   3456788889999999999999999999999863 334566777788


Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCC-cChHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLI-PGHKHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRM  606 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~  606 (708)
                      .+...|++++|.+.+++..+.... .....+..++..+...|++++|...+++.. ..+.+...+..+...+...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            899999999999999999875322 235567778899999999999999999873 332356778888889999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          607 VIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      |...++++++..|+++..+..++.++...|+.++|..+.+.+..
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            99999999999998888888999999999999999999887754

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.40  E-value=3.9e-08  Score=97.90  Aligned_cols=538  Identities=11%  Similarity=0.118  Sum_probs=267.9

Q ss_pred             hhhHHHHHHhccCChHHHHHHhhcCC-----CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHH
Q 038516           50 MYNNVLSMYGRCGSIRDARQVFDEIP-----KRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQA  124 (708)
Q Consensus        50 ~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  124 (708)
                      .|-.-+....+.|++..-+..|+...     ......|...+.-....+- ++.++.++++-..-  .|  ..-.--+..
T Consensus       104 Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~l-Pets~rvyrRYLk~--~P--~~~eeyie~  178 (835)
T KOG2047|consen  104 IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGL-PETSIRVYRRYLKV--AP--EAREEYIEY  178 (835)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCC-hHHHHHHHHHHHhc--CH--HHHHHHHHH
Confidence            34444555555666666666666532     1233456666655555555 66777777766542  22  224445566


Q ss_pred             hccccchHHHHHHHHHHHHhC------CCCchhHHhHHHHHhHhCCChh---HHHHHhccCCC--CC--cccHHHHHHHH
Q 038516          125 VSLLEDQLMGSLLHAQVIKYG------SSEDTCVQTSLLGMYSNCGDFE---SAKRIFGLIGD--KD--AVAWNSIILGN  191 (708)
Q Consensus       125 ~~~~~~~~~a~~~~~~~~~~g------~~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~~~--~~--~~~~~~li~~~  191 (708)
                      ++..+++++|.+.+..++...      .+.+-..|.-+.+..++.-+.-   ....+++.+..  +|  ...|++|..-|
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            666677777666665554332      1334445555555544442211   12222333222  12  34577777777


Q ss_pred             hcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHH
Q 038516          192 FKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAF  271 (708)
Q Consensus       192 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  271 (708)
                      .+.|.++.|.++|++....  ..+..-|+.+.++|++-...--+..+ +...+.+..+.            ..-+++-.+
T Consensus       259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~m-e~a~~~~~n~e------------d~~dl~~~~  323 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKM-ELADEESGNEE------------DDVDLELHM  323 (835)
T ss_pred             HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHH-hhhhhcccChh------------hhhhHHHHH
Confidence            7777777777777766543  23444455555555432211111100 00000000000            001222333


Q ss_pred             HHHhccCC---------------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccc
Q 038516          272 SVFTRIEN---------------PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAY  336 (708)
Q Consensus       272 ~~~~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~  336 (708)
                      ..|+.+..               .++..|..-+.  +..|+..+-...|.+..+.  +.|....                
T Consensus       324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~--vdP~ka~----------------  383 (835)
T KOG2047|consen  324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT--VDPKKAV----------------  383 (835)
T ss_pred             HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc--cCcccCC----------------
Confidence            33443332               12223322222  2244455555555555543  3332110                


Q ss_pred             hHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEee-------ehhhHHHHhcCCChHHHHHHHHH
Q 038516          337 GKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVL-------WTEMIIGHSRMGDGECAIKLFCK  409 (708)
Q Consensus       337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~A~~~~~~  409 (708)
                                   ..-...|..+.+.|-..|+++.|+.+|+...+-+-..       |......=.++.+++.|++++++
T Consensus       384 -------------Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~  450 (835)
T KOG2047|consen  384 -------------GSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRR  450 (835)
T ss_pred             -------------CChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHh
Confidence                         0011233444444555555555555555444332221       22222222344455555555444


Q ss_pred             HhHC-----------CCcc------CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHH
Q 038516          410 MCRE-----------GLKC------DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRA  472 (708)
Q Consensus       410 m~~~-----------g~~p------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  472 (708)
                      ...-           +.++      +...|...++.-...|-++....+++.+.+..+. ++.+.......+....-+++
T Consensus       451 A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfee  529 (835)
T KOG2047|consen  451 ATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEE  529 (835)
T ss_pred             hhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHH
Confidence            3211           0111      1223444455555567788888888888887653 33333334444556677899


Q ss_pred             HHHHHhhCC----CCCh-HHHHHHHHHHHhc---CChHHHHHHHHHHHHCCCCCChHHHHHHHH--HHhccCcHHHHHHH
Q 038516          473 AESIFSQVL----HPDL-KCWNALLGGYSHY---GMAEEAFMVFEVILEHGLRPDEITFLSLLS--ACSHSGLVERGKIL  542 (708)
Q Consensus       473 A~~~~~~~~----~~~~-~~~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~  542 (708)
                      +.++|++-+    .|++ ..|+..+.-+.+.   ...+.|..+|++.++ |.+|...-+..|+.  .-..-|....|+++
T Consensus       530 sFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsi  608 (835)
T KOG2047|consen  530 SFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSI  608 (835)
T ss_pred             HHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            999998774    3554 4788877666542   368899999999999 66776443333333  23345888888899


Q ss_pred             HHHhhHCCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhc
Q 038516          543 WNQMKEHSLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRT---LLSTCVAKRNSRMVIQAAEQVLRL  617 (708)
Q Consensus       543 ~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~  617 (708)
                      +++... ++++.  ...|+.++.-....=-...-..+|+++-..-|+...-..   ....-.+.|..+.|..++.-.-++
T Consensus       609 yerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~  687 (835)
T KOG2047|consen  609 YERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQI  687 (835)
T ss_pred             HHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence            888765 34443  345666554322211112222333333111133333222   222345578888888888777765


Q ss_pred             C-CC-CcchHHHHHHHHHhcCCchHHHH
Q 038516          618 D-PE-DGTTHILLSNLYAATGRWDCVAK  643 (708)
Q Consensus       618 ~-p~-~~~~~~~l~~~~~~~g~~~eA~~  643 (708)
                      . |. +...|...-.--.+.|+-+--.+
T Consensus       688 ~dPr~~~~fW~twk~FEvrHGnedT~ke  715 (835)
T KOG2047|consen  688 CDPRVTTEFWDTWKEFEVRHGNEDTYKE  715 (835)
T ss_pred             CCCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence            3 44 33456666666667777443333

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.35  E-value=9e-10  Score=103.59  Aligned_cols=286  Identities=15%  Similarity=0.060  Sum_probs=180.5

Q ss_pred             CCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHH
Q 038516          194 NDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSV  273 (708)
Q Consensus       194 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  273 (708)
                      .|++..|.++..+-.+.+-.| ...|.....+.-+.|+.+.+-.++.++.+....++..+.-.........|+.+.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            577777777777766654332 2345566666677788888888888777764456666677777777788888888777


Q ss_pred             HhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCC
Q 038516          274 FTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYD  350 (708)
Q Consensus       274 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  350 (708)
                      .+++.+   .++.......++|.+.|++.....++.++.+. +.--|+..-                            .
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka-~~l~~~e~~----------------------------~  226 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKA-GLLSDEEAA----------------------------R  226 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHc-cCCChHHHH----------------------------H
Confidence            666554   56677788888888888888888888888887 544443211                            0


Q ss_pred             CchhHHhHHHHHHHhcCCChhHHHHHhhcCC---CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHH
Q 038516          351 SSVFVGTTLLNMYFKNGDAESPQKVFMLIAE---KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALS  427 (708)
Q Consensus       351 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  427 (708)
                      ....++..+++-....+..+.-...|+..+.   .++..-.+++.-+.+.|+.++|.++..+..+.+..|...+    +-
T Consensus       227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~----~~  302 (400)
T COG3071         227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR----LI  302 (400)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH----HH
Confidence            0112333444444444444444455555543   2455556677777888888888888888888777766322    22


Q ss_pred             HHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHH
Q 038516          428 ACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAF  505 (708)
Q Consensus       428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~  505 (708)
                      .+.+.++...-.+..+...+.. +.++..+..|...|.+.+.+.+|...|+...  .|+..+|+.+..+|.+.|++.+|.
T Consensus       303 ~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~  381 (400)
T COG3071         303 PRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAE  381 (400)
T ss_pred             hhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHH
Confidence            3445555555544444433322 2333556666666666666666666666553  466666666666666666666666


Q ss_pred             HHHHHHHHC
Q 038516          506 MVFEVILEH  514 (708)
Q Consensus       506 ~~~~~m~~~  514 (708)
                      +..++....
T Consensus       382 ~~r~e~L~~  390 (400)
T COG3071         382 QVRREALLL  390 (400)
T ss_pred             HHHHHHHHH
Confidence            666665543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.35  E-value=1.5e-09  Score=102.07  Aligned_cols=285  Identities=13%  Similarity=0.068  Sum_probs=163.9

Q ss_pred             CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHH
Q 038516          295 NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQK  374 (708)
Q Consensus       295 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  374 (708)
                      .|+|.+|.++..+-.+. + .-....|..-..+.-..|+.+.+.+++.++.+.--.++..+.-+..+.....|+++.|..
T Consensus        97 eG~~~qAEkl~~rnae~-~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEH-G-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhc-C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            56777777776665544 2 222334555556666677777777777776665445566666666677777777777776


Q ss_pred             HHhhcCC---CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCC
Q 038516          375 VFMLIAE---KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHG  451 (708)
Q Consensus       375 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  451 (708)
                      -.+++.+   .++........+|.+.|++.+...++..|.+.|.--+...-.                            
T Consensus       175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~----------------------------  226 (400)
T COG3071         175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR----------------------------  226 (400)
T ss_pred             HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence            6665443   355666667777888888888888888887776544332110                            


Q ss_pred             CchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516          452 VEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS  528 (708)
Q Consensus       452 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  528 (708)
                      ....+++.+++=....+..+.-...++..+   +.++..-.+++.-+.+.|+.++|.++.++..+.+..|+    ...+-
T Consensus       227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~  302 (400)
T COG3071         227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLI  302 (400)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHH
Confidence            001122223322222233333333444443   33455555666666777777777777777777665555    22223


Q ss_pred             HHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMV  607 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  607 (708)
                      .+.+-++...-++..+.-.+. +-.|  ..+.+|+..|.+.+.|.+|.+.++.+....|+...|..+..++.+.|+.++|
T Consensus       303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence            455555555555555554442 3223  4555666666666666666666665533336666666666666666666666


Q ss_pred             HHHHHHHH
Q 038516          608 IQAAEQVL  615 (708)
Q Consensus       608 ~~~~~~~~  615 (708)
                      .+..++++
T Consensus       381 ~~~r~e~L  388 (400)
T COG3071         381 EQVRREAL  388 (400)
T ss_pred             HHHHHHHH
Confidence            66666555

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.35  E-value=1.2e-08  Score=96.00  Aligned_cols=274  Identities=12%  Similarity=0.014  Sum_probs=176.9

Q ss_pred             CCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehh---hHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHH
Q 038516          350 DSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTE---MIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGAL  426 (708)
Q Consensus       350 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  426 (708)
                      +.|......+.+.+...|+.++|...|+....-|+.+...   ..-.+.+.|+.+....+...+.... .-....|..-.
T Consensus       229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~  307 (564)
T KOG1174|consen  229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHA  307 (564)
T ss_pred             CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhh
Confidence            3344444455555555555555555555444333222111   1222344555555555555544321 00111111112


Q ss_pred             HHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--C-CChHHHHHHHHHHHhcCChHH
Q 038516          427 SACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--H-PDLKCWNALLGGYSHYGMAEE  503 (708)
Q Consensus       427 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~  503 (708)
                      ...-...+++.|..+-...++.+ +.+...+-.-..++...|+.++|.-.|+...  . -+..+|..|+.+|...|++.+
T Consensus       308 ~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  308 QLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             hhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHH
Confidence            22233455555555555544432 1222333333456678899999999998764  3 478899999999999999999


Q ss_pred             HHHHHHHHHHCCCCCChHHHHHHH-HH-HhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038516          504 AFMVFEVILEHGLRPDEITFLSLL-SA-CSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAE  580 (708)
Q Consensus       504 A~~~~~~m~~~g~~p~~~~~~~ll-~~-~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~  580 (708)
                      |.-+-+..... +..+..+...+. .. +.....-++|.+++++...  +.|+ ......+...+.+.|+++++..++++
T Consensus       387 A~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~  463 (564)
T KOG1174|consen  387 ANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEK  463 (564)
T ss_pred             HHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence            99988887765 444666665553 22 3334456889999988776  6676 55677788999999999999999999


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516          581 SPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL  628 (708)
Q Consensus       581 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  628 (708)
                      .....||....+.|+..+...+.+++|...|..++.++|++-.+...|
T Consensus       464 ~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl  511 (564)
T KOG1174|consen  464 HLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL  511 (564)
T ss_pred             HHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence            866668999999999999999999999999999999999986644433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.34  E-value=4e-08  Score=97.86  Aligned_cols=530  Identities=13%  Similarity=0.131  Sum_probs=292.2

Q ss_pred             hHHhHHHHHhHhCCChhHHHHHhccCCC-----CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHH
Q 038516          151 CVQTSLLGMYSNCGDFESAKRIFGLIGD-----KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNA  225 (708)
Q Consensus       151 ~~~~~li~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  225 (708)
                      .+|-..+....++|++..-...|+....     .....|...+.-..+.+-++.++.+|++.++.  .|.  .-.--|..
T Consensus       103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P~--~~eeyie~  178 (835)
T KOG2047|consen  103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--APE--AREEYIEY  178 (835)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CHH--HHHHHHHH
Confidence            4445555555555555555555543221     23345666666555666666666666666542  222  24444555


Q ss_pred             HhccCChhHHHHHHHHHHHh------CCCCChhhHHHHHHhcccCCCh---HHHHHHHhccCC--CC--hhHHHHHHHHH
Q 038516          226 CSRMGNFVCGKVIHARVIIS------NTQVDLPLENALLDMYSKCSDT---QTAFSVFTRIEN--PD--LVSWNSMIAGY  292 (708)
Q Consensus       226 ~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~--~~--~~~~~~li~~~  292 (708)
                      ++..+++++|.+.+..++..      ..+.+...|..+.+..++.-+.   -....+++.+..  +|  ...|++|..-|
T Consensus       179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY  258 (835)
T KOG2047|consen  179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY  258 (835)
T ss_pred             HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence            55666666666665555422      1233444555555544443322   223334444433  22  23466666666


Q ss_pred             HcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC----------------CCC------ccchHHHHHHHHHHC--
Q 038516          293 MENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA----------------LPA------SAYGKPLHALVIKTG--  348 (708)
Q Consensus       293 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----------------~~~------~~~a~~~~~~~~~~~--  348 (708)
                      .+.|.+++|.++|++....   ..+..-|..+..+|+.                .++      ++....-|+.+...+  
T Consensus       259 Ir~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~  335 (835)
T KOG2047|consen  259 IRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPL  335 (835)
T ss_pred             HHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccch
Confidence            6666666666666665543   2222223333322221                111      111122233322221  


Q ss_pred             ---------CCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---------CEeeehhhHHHHhcCCChHHHHHHHHHH
Q 038516          349 ---------YDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---------DIVLWTEMIIGHSRMGDGECAIKLFCKM  410 (708)
Q Consensus       349 ---------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~A~~~~~~m  410 (708)
                               -+.+...|..-+..+  .|+..+-...+.+....         -...|..+...|-.+|+.+.|..+|++.
T Consensus       336 ~lNsVlLRQn~~nV~eW~kRV~l~--e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka  413 (835)
T KOG2047|consen  336 LLNSVLLRQNPHNVEEWHKRVKLY--EGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKA  413 (835)
T ss_pred             HHHHHHHhcCCccHHHHHhhhhhh--cCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHh
Confidence                     122333333333322  34555555555554321         2246888899999999999999999988


Q ss_pred             hHCCCccC---HHHHHHHHHHHhCcccHHHHHHHHHHHHHh-----------CCCC------chhHHHHHHHhhHhcCCH
Q 038516          411 CREGLKCD---NFALSGALSACADLAILKQGEMIHSQAEKT-----------GHGV------EMSVCGSLVDMYAKNGDL  470 (708)
Q Consensus       411 ~~~g~~p~---~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~------~~~~~~~l~~~~~~~g~~  470 (708)
                      .+-..+--   ..+|..-...-.+..+++.|..+.+....-           +.++      +..+++.+++.--..|-+
T Consensus       414 ~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf  493 (835)
T KOG2047|consen  414 TKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF  493 (835)
T ss_pred             hcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence            76443221   123333333334566788888877665421           1122      234555566666778899


Q ss_pred             HHHHHHHhhCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhc---cCcHHHHHHHH
Q 038516          471 RAAESIFSQVLHP---DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE-ITFLSLLSACSH---SGLVERGKILW  543 (708)
Q Consensus       471 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~~~~~~a~~~~  543 (708)
                      +....+|++++.-   ++...-.....+-.+.-++++.+++++-+..--.|+. ..|+..+.-+.+   ....+.|..+|
T Consensus       494 estk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLF  573 (835)
T KOG2047|consen  494 ESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLF  573 (835)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHH
Confidence            9999999988642   2222222222334455678899999887776445664 346666664433   34789999999


Q ss_pred             HHhhHCCCCcChHH--HHHHHHHHHhcCCHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516          544 NQMKEHSLIPGHKH--YSCMVSLLSRAGLLDEAENLIAESPYSEI---RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD  618 (708)
Q Consensus       544 ~~~~~~~~~p~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  618 (708)
                      ++..+ |.+|...-  |-.....=.+-|.-..|+.+++++...-+   ....|+..+.-....=-+..-..+|+++++.-
T Consensus       574 EqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~L  652 (835)
T KOG2047|consen  574 EQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESL  652 (835)
T ss_pred             HHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhC
Confidence            99998 77776332  32233333467888999999999843312   23345555544333323445678899999988


Q ss_pred             CCCcch--HHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 038516          619 PEDGTT--HILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMR  696 (708)
Q Consensus       619 p~~~~~--~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  696 (708)
                      |++..-  -...++.-.+.|..+.|+.++.-..+-..+...+.-|-       .+-.-...|+. ++.+++.-++++-+.
T Consensus       653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~-------twk~FEvrHGn-edT~keMLRikRsvq  724 (835)
T KOG2047|consen  653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWD-------TWKEFEVRHGN-EDTYKEMLRIKRSVQ  724 (835)
T ss_pred             ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHH-------HHHHHHHhcCC-HHHHHHHHHHHHHHH
Confidence            886543  34567888899999999999887655433332222221       01111234666 666666666665554


Q ss_pred             hh
Q 038516          697 KL  698 (708)
Q Consensus       697 ~~  698 (708)
                      ..
T Consensus       725 a~  726 (835)
T KOG2047|consen  725 AT  726 (835)
T ss_pred             Hh
Confidence            44

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.32  E-value=1.3e-08  Score=103.70  Aligned_cols=477  Identities=13%  Similarity=0.053  Sum_probs=253.8

Q ss_pred             hHHHHHHHHHHHHcCCCCCcchHHHHHHHhc---cccchHHH-------------------HH----HHHHHHHhCCCCc
Q 038516           96 AHLTFRLIDQMEFECLRPNGLTFTSLAQAVS---LLEDQLMG-------------------SL----LHAQVIKYGSSED  149 (708)
Q Consensus        96 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~---~~~~~~~a-------------------~~----~~~~~~~~g~~~~  149 (708)
                      .+.++.-+.....++...+..++..+...+.   ..++.+++                   ..    .+.++....+..|
T Consensus       243 ~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd  322 (799)
T KOG4162|consen  243 PKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQND  322 (799)
T ss_pred             chHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcch
Confidence            5566666666666666666666655544332   23333333                   11    1122222234456


Q ss_pred             hhHHhHHHHHhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcch-HHHHHHH
Q 038516          150 TCVQTSLLGMYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFS-YSMLLNA  225 (708)
Q Consensus       150 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~  225 (708)
                      ..+|..|.-+..++|+++.+.+.|++...   .....|+.+-..+...|.-..|+.+++.-....-.|+..+ +...-+.
T Consensus       323 ~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmaskl  402 (799)
T KOG4162|consen  323 AAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKL  402 (799)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHH
Confidence            66666666666666666666666665443   2334566666666666666666666665544322243333 2222222


Q ss_pred             Hh-ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcC---------
Q 038516          226 CS-RMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMEN---------  295 (708)
Q Consensus       226 ~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~---------  295 (708)
                      |. +.+..+++..+-.+++.....              ..++             .....|..+.-+|...         
T Consensus       403 c~e~l~~~eegldYA~kai~~~~~--------------~~~~-------------l~~~~~l~lGi~y~~~A~~a~~~se  455 (799)
T KOG4162|consen  403 CIERLKLVEEGLDYAQKAISLLGG--------------QRSH-------------LKPRGYLFLGIAYGFQARQANLKSE  455 (799)
T ss_pred             HHhchhhhhhHHHHHHHHHHHhhh--------------hhhh-------------hhhhHHHHHHHHHHhHhhcCCChHH
Confidence            32 333444444444443331100              0000             1112222222222211         


Q ss_pred             --CCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHH
Q 038516          296 --GNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQ  373 (708)
Q Consensus       296 --g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  373 (708)
                        ....++++.+++..+..+..|+...|..+-  ++-.++++.|....++..+.+-..+...|..|.-.+...+++.+|+
T Consensus       456 R~~~h~kslqale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al  533 (799)
T KOG4162|consen  456 RDALHKKSLQALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEAL  533 (799)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHH
Confidence              123456666777666544555555554443  3445667777777777777755667777777777777777777777


Q ss_pred             HHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHC--CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q 038516          374 KVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCRE--GLKCDNFALSGALSACADLAILKQGEMIHSQAEKT  448 (708)
Q Consensus       374 ~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  448 (708)
                      .+.+...+.   |......-+..-..-++.++++.....+..-  ...+-..+                           
T Consensus       534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~---------------------------  586 (799)
T KOG4162|consen  534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQT---------------------------  586 (799)
T ss_pred             HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhh---------------------------
Confidence            776654432   1111111122222345556665555544321  00000000                           


Q ss_pred             CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--CC-
Q 038516          449 GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL------HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR--PD-  519 (708)
Q Consensus       449 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~-  519 (708)
                                         |+-....+....+.      ...+.++..+..-....+....-...   +...-+.  |+ 
T Consensus       587 -------------------~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~---Lp~s~~~~~~~~  644 (799)
T KOG4162|consen  587 -------------------LDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK---LPSSTVLPGPDS  644 (799)
T ss_pred             -------------------hhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---cCcccccCCCCc
Confidence                               00111111111110      00111111111111100000000000   1111111  12 


Q ss_pred             -----hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHH
Q 038516          520 -----EITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWR  592 (708)
Q Consensus       520 -----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~  592 (708)
                           ...|......+.+.+..++|...+.+..+  +.| ....|...+..+...|+++||.+.|..+ ...|....+..
T Consensus       645 ~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~  722 (799)
T KOG4162|consen  645 LWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMT  722 (799)
T ss_pred             hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHH
Confidence                 12233344466777777777777666664  334 3556777778888999999999998887 44434678899


Q ss_pred             HHHHHHHhcCCHHHHHH--HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          593 TLLSTCVAKRNSRMVIQ--AAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       593 ~l~~~~~~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      +++..+.+.|+...|+.  ++..+++++|.++.+|..||.++.+.|+.++|.+.|....+..
T Consensus       723 Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  723 ALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            99999999998888888  9999999999999999999999999999999999999876643

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.31  E-value=5.7e-09  Score=95.75  Aligned_cols=229  Identities=14%  Similarity=0.074  Sum_probs=138.8

Q ss_pred             hCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhC---CCCChHHHHHHHHHHHhcCChHHHHH
Q 038516          430 ADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQV---LHPDLKCWNALLGGYSHYGMAEEAFM  506 (708)
Q Consensus       430 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~g~~~~A~~  506 (708)
                      ...|+...+......+.+.. +.+...+..-..+|...|++..|+.-++..   ...+..++--+-..+...|+.+.++.
T Consensus       166 ~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~  244 (504)
T KOG0624|consen  166 SGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLK  244 (504)
T ss_pred             hcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHH
Confidence            33445555555444444432 334455555556666666666665544433   23444455555555566666666666


Q ss_pred             HHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC
Q 038516          507 VFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI  586 (708)
Q Consensus       507 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  586 (708)
                      ..++.++  +.||.......   |   +.+.+..+.++.|                ....+.++|.++++-.++.....|
T Consensus       245 ~iRECLK--ldpdHK~Cf~~---Y---KklkKv~K~les~----------------e~~ie~~~~t~cle~ge~vlk~ep  300 (504)
T KOG0624|consen  245 EIRECLK--LDPDHKLCFPF---Y---KKLKKVVKSLESA----------------EQAIEEKHWTECLEAGEKVLKNEP  300 (504)
T ss_pred             HHHHHHc--cCcchhhHHHH---H---HHHHHHHHHHHHH----------------HHHHhhhhHHHHHHHHHHHHhcCC
Confidence            6666665  35554321110   1   1111122222222                223456677777776666522223


Q ss_pred             C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeE
Q 038516          587 R-----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSW  661 (708)
Q Consensus       587 ~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~  661 (708)
                      .     ...+..+-.+++..+++-+|++.+.++++.+|++..++...+.+|.-...|++|+.-++++.+.+.        
T Consensus       301 ~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~--------  372 (504)
T KOG0624|consen  301 EETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE--------  372 (504)
T ss_pred             cccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc--------
Confidence            3     233455555667789999999999999999999999999999999999999999999998876532        


Q ss_pred             EEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhh-hhhccccc
Q 038516          662 IEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKL-VTDEFGKE  706 (708)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~  706 (708)
                                     +|..+.+....-++++.+-++. +++|+||.
T Consensus       373 ---------------sn~~~reGle~Akrlkkqs~kRDYYKILGVk  403 (504)
T KOG0624|consen  373 ---------------SNTRAREGLERAKRLKKQSGKRDYYKILGVK  403 (504)
T ss_pred             ---------------ccHHHHHHHHHHHHHHHHhccchHHHHhhhc
Confidence                           3566666666667766555554 89999874

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.30  E-value=4e-10  Score=97.88  Aligned_cols=163  Identities=17%  Similarity=0.117  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSL  564 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~  564 (708)
                      +...|.-+|.+.|++..|..-+++.++.  .|+ ..++..+...|.+.|..+.|.+.|++..+  +.|+ ..+.|..+..
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F  112 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence            4556778899999999999999999995  665 56788888899999999999999999987  5564 6788899999


Q ss_pred             HHhcCCHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 038516          565 LSRAGLLDEAENLIAES---PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCV  641 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA  641 (708)
                      +|..|++++|...|+++   |.-+....+|..++.+..+.|+.+.|+..++++++++|+++.....+++.+.+.|++-+|
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            99999999999999998   333335678888988889999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCC
Q 038516          642 AKMRRKMKGSML  653 (708)
Q Consensus       642 ~~~~~~~~~~~~  653 (708)
                      ..++++....+.
T Consensus       193 r~~~~~~~~~~~  204 (250)
T COG3063         193 RLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHhccc
Confidence            999998877653

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.30  E-value=4.4e-08  Score=96.33  Aligned_cols=282  Identities=11%  Similarity=-0.011  Sum_probs=203.8

Q ss_pred             CCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCE---eeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHH
Q 038516          349 YDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDI---VLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGA  425 (708)
Q Consensus       349 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~l  425 (708)
                      ...+..+...-.+-+...+++.+..++++.+.+.|+   ..+-.-|.++...|+..+-..+=.+|.+. .+-...+|-++
T Consensus       240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV  318 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV  318 (611)
T ss_pred             hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence            345555566666677777778888887777766543   33444456666777777666666666654 23345677777


Q ss_pred             HHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChH
Q 038516          426 LSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAE  502 (708)
Q Consensus       426 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~  502 (708)
                      ..-|...|...+|++.+.......- .-...|-.+...|.-.|..|.|...+....   +.....+--+..-|.+.++..
T Consensus       319 g~YYl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k  397 (611)
T KOG1173|consen  319 GCYYLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK  397 (611)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence            7777777888888888877654431 123456677888888888898888876552   222222333455678889999


Q ss_pred             HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC--CCCc----ChHHHHHHHHHHHhcCCHHHHH
Q 038516          503 EAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH--SLIP----GHKHYSCMVSLLSRAGLLDEAE  575 (708)
Q Consensus       503 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p----~~~~~~~l~~~~~~~g~~~~A~  575 (708)
                      .|.+.|.+...  +-|+ ....+-+.-.....+.+.+|..+|+.....  .+.+    ...+++.|+.+|.+.+++++|+
T Consensus       398 LAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI  475 (611)
T KOG1173|consen  398 LAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAI  475 (611)
T ss_pred             HHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHH
Confidence            99999999887  5664 555555555566788999999999988732  1111    3456888999999999999999


Q ss_pred             HHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516          576 NLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA  634 (708)
Q Consensus       576 ~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  634 (708)
                      ..+++. ...+.+..++.+++..+...|+++.|...+.+++.+.|++..+-..|+.+...
T Consensus       476 ~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  476 DYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            999998 34445889999999999999999999999999999999998877777765544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.29  E-value=2.8e-09  Score=97.16  Aligned_cols=284  Identities=12%  Similarity=0.133  Sum_probs=169.8

Q ss_pred             CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHC-CCCc--hhHHhHHHHHHHhcCCChh
Q 038516          295 NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTG-YDSS--VFVGTTLLNMYFKNGDAES  371 (708)
Q Consensus       295 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~g~~~~  371 (708)
                      +++.++|.++|-+|.+.  -+-+..+-.++-+.+-+.|.++.|++++..+..+. ++.+  ..+...|..-|...|-+|.
T Consensus        48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR  125 (389)
T COG2956          48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR  125 (389)
T ss_pred             hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence            45666777777766653  22333333445555666666666666666655432 1111  1233445666777777777


Q ss_pred             HHHHHhhcCCCC---EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh
Q 038516          372 PQKVFMLIAEKD---IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKT  448 (708)
Q Consensus       372 A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~  448 (708)
                      |+.+|..+.+.+   ..+...|+..|....+|++|+++-+++.+.+-.+..+-.                          
T Consensus       126 AE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eI--------------------------  179 (389)
T COG2956         126 AEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEI--------------------------  179 (389)
T ss_pred             HHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHH--------------------------
Confidence            777777776632   234555677777777777777777777665544333211                          


Q ss_pred             CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHH
Q 038516          449 GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHP---DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD--EITF  523 (708)
Q Consensus       449 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~  523 (708)
                           ...|.-|...+.-..+++.|..++.+..+.   .+..--.+.+.+...|+++.|++.|+...+.  .|+  ..+.
T Consensus       180 -----AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ--n~~yl~evl  252 (389)
T COG2956         180 -----AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ--NPEYLSEVL  252 (389)
T ss_pred             -----HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHh--ChHHHHHHH
Confidence                 112333444455566777777777776532   2333344567788888899999988888886  444  3456


Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh---
Q 038516          524 LSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA---  600 (708)
Q Consensus       524 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~---  600 (708)
                      ..|..+|.+.|+.++...++.++.+..  +....-..+.+......-.++|...+.+-....|+...+..++.....   
T Consensus       253 ~~L~~~Y~~lg~~~~~~~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~dae  330 (389)
T COG2956         253 EMLYECYAQLGKPAEGLNFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAE  330 (389)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhcccc
Confidence            777888889999999988888888752  333333444454444445566666555443334888877777766443   


Q ss_pred             cCCHHHHHHHHHHHH
Q 038516          601 KRNSRMVIQAAEQVL  615 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~  615 (708)
                      .|...+....+.+++
T Consensus       331 eg~~k~sL~~lr~mv  345 (389)
T COG2956         331 EGRAKESLDLLRDMV  345 (389)
T ss_pred             ccchhhhHHHHHHHH
Confidence            233344444444444

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=1.9e-07  Score=97.55  Aligned_cols=550  Identities=13%  Similarity=0.133  Sum_probs=306.3

Q ss_pred             cchhhHHHHHHhccCChHHHHHHhhcCCC--CCcc-----cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHH
Q 038516           48 PYMYNNVLSMYGRCGSIRDARQVFDEIPK--RSLV-----SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTS  120 (708)
Q Consensus        48 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~-----~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  120 (708)
                      .+-+..+.+.|.++|-.+.|++.+..+..  +.++     .-..++ .|.-.-. ++.+++.++.|...+++.|..+...
T Consensus       606 HyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~ls-ve~s~eclkaml~~NirqNlQi~VQ  683 (1666)
T KOG0985|consen  606 HYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLS-VEDSLECLKAMLSANIRQNLQIVVQ  683 (1666)
T ss_pred             cccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcC-HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            34577888999999999999999988752  2222     122233 3444455 8999999999999988888877766


Q ss_pred             HHHHhccccchHHHHHHHHHHHHh-----------CCCCchhHHhHHHHHhHhCCChhHHHHHhccCCC-----------
Q 038516          121 LAQAVSLLEDQLMGSLLHAQVIKY-----------GSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD-----------  178 (708)
Q Consensus       121 ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-----------  178 (708)
                      +..-|...-......++|+.....           .+.-|+.+.-..|.+.++.|++.+..++-++-.-           
T Consensus       684 vatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLk  763 (1666)
T KOG0985|consen  684 VATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLK  763 (1666)
T ss_pred             HHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHH
Confidence            666665554455555566555442           2467778888899999999999999888654321           


Q ss_pred             ----CC---------ccc-HHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc---------------chHH---------
Q 038516          179 ----KD---------AVA-WNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ---------------FSYS---------  220 (708)
Q Consensus       179 ----~~---------~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------------~~~~---------  220 (708)
                          +|         ..- -+-|+- |.-.++..+-+++|-+-    +.|+.               ....         
T Consensus       764 eAkL~DqlPLiiVCDRf~fVhdlvl-YLyrnn~~kyIE~yVQk----vNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq  838 (1666)
T KOG0985|consen  764 EAKLTDQLPLIIVCDRFDFVHDLVL-YLYRNNLQKYIEIYVQK----VNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQ  838 (1666)
T ss_pred             hccccccCceEEEecccccHHHHHH-HHHHhhHHHHHHHHHhh----cCCcccchhhhhhhcCCCcHHHHHHHHHHHhcc
Confidence                11         110 011111 11112222222222211    11111               0011         


Q ss_pred             ----HHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCC
Q 038516          221 ----MLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENG  296 (708)
Q Consensus       221 ----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g  296 (708)
                          -|..-+-+.++++--...++..+..| ..|..++|+|...|..+.+-.+-  .+    +.+..--+..+.-||...
T Consensus       839 ~~~deLv~EvEkRNRLklLlp~LE~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~--fL----keN~yYDs~vVGkYCEKR  911 (1666)
T KOG0985|consen  839 FPVDELVEEVEKRNRLKLLLPWLESLIQEG-SQDPATHNALAKIYIDSNNNPER--FL----KENPYYDSKVVGKYCEKR  911 (1666)
T ss_pred             CChHHHHHHHHhhhhHHHHHHHHHHHHhcc-CcchHHHhhhhheeecCCCChHH--hc----ccCCcchhhHHhhhhccc
Confidence                11111222233333333333334444 23555555555555544432221  11    011111112233344444


Q ss_pred             CchHHHHHHHHHHHc---CCCCCCHhHHHHHHHHHcCCCCccchHHHHHH-----------HHHHCCC--CchhHHhHHH
Q 038516          297 NGEKAVDMFVALRRM---SLLKPDEYTFAAIISATSALPASAYGKPLHAL-----------VIKTGYD--SSVFVGTTLL  360 (708)
Q Consensus       297 ~~~~A~~~~~~m~~~---~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-----------~~~~~~~--~~~~~~~~li  360 (708)
                      ++.-|.--|++=.-.   -++--....|....+.+....+.+.-.+++.+           .+..+++  .|+.-....+
T Consensus       912 DP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tV  991 (1666)
T KOG0985|consen  912 DPHLACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTV  991 (1666)
T ss_pred             CCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHH
Confidence            443332222110000   01112222333444444444444433333311           1111211  1233333444


Q ss_pred             HHHHhcCCChhHHHHHhhcCC-CCEe-----eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc
Q 038516          361 NMYFKNGDAESPQKVFMLIAE-KDIV-----LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI  434 (708)
Q Consensus       361 ~~~~~~g~~~~A~~~~~~~~~-~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  434 (708)
                      .++...+-+.+-.++++.+.- +++.     .-|.|+..-.+ -+..+..+..+++-.-. .|+      +...+...+-
T Consensus       992 kAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~------ia~iai~~~L 1063 (1666)
T KOG0985|consen  992 KAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APD------IAEIAIENQL 1063 (1666)
T ss_pred             HHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chh------HHHHHhhhhH
Confidence            455555555555555554432 1111     12222222222 23334444444432211 111      1222344556


Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038516          435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEH  514 (708)
Q Consensus       435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  514 (708)
                      +++|..+|+..     ..+....+.|+.   ..+.++.|.++-++..+|  ..|..+..+-.+.|...+|++-|-+.   
T Consensus      1064 yEEAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyika--- 1130 (1666)
T KOG0985|consen 1064 YEEAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIKA--- 1130 (1666)
T ss_pred             HHHHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHhc---
Confidence            67777776643     233333344443   456677777776666544  57999999999999999998876543   


Q ss_pred             CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHH
Q 038516          515 GLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTL  594 (708)
Q Consensus       515 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l  594 (708)
                         -|...|.-++..+.+.|.+++..+++....+....|...+  .|+.+|.+.+++.|-++++.     +|+..-....
T Consensus      1131 ---dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~-----gpN~A~i~~v 1200 (1666)
T KOG0985|consen 1131 ---DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA-----GPNVANIQQV 1200 (1666)
T ss_pred             ---CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc-----CCCchhHHHH
Confidence               3667899999999999999999999998888777776654  58899999999999988873     3777778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      +.-|...|.++.|.-+|..        .+-|..|+..+...|.|..|.+.-+++.+
T Consensus      1201 Gdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1201 GDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred             hHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            8899999999999888763        45588888899999999988877766544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=6.2e-08  Score=95.81  Aligned_cols=181  Identities=13%  Similarity=0.164  Sum_probs=118.9

Q ss_pred             HHHHhhHhcCCHHHHHHHHhhCCCCC-hHHHHHHHHHH-H-hcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhcc
Q 038516          459 SLVDMYAKNGDLRAAESIFSQVLHPD-LKCWNALLGGY-S-HYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHS  533 (708)
Q Consensus       459 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~-~-~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~  533 (708)
                      .++.+|.  +..+.+.++....+... ...+..++... . +...+..+.+++...-+.  .|..  ......+......
T Consensus       314 ~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~  389 (652)
T KOG2376|consen  314 ALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQ  389 (652)
T ss_pred             HHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhc
Confidence            3444443  45567777777665322 33344444333 2 223577888888888775  4543  4455556678889


Q ss_pred             CcHHHHHHHHH--------HhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCCHHHHHHHHHH
Q 038516          534 GLVERGKILWN--------QMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES--------PYSEIRIELWRTLLST  597 (708)
Q Consensus       534 ~~~~~a~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~~~~~~~l~~~  597 (708)
                      |+++.|.+++.        .+.+.+..|  .+...++..+.+.++-+-|..+++++        +..+.-...|..+...
T Consensus       390 gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f  467 (652)
T KOG2376|consen  390 GNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF  467 (652)
T ss_pred             CCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence            99999999999        555444444  45566788888888877676666554        2221112234444444


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516          598 CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       598 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~  646 (708)
                      -.++|+.++|...++++++.+|++..+...++.+|... +.+.|..+-+
T Consensus       468 ~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k  515 (652)
T KOG2376|consen  468 KLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK  515 (652)
T ss_pred             HHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence            55689999999999999999999999999999888775 3455555443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.28  E-value=1.4e-08  Score=93.59  Aligned_cols=366  Identities=13%  Similarity=0.086  Sum_probs=162.8

Q ss_pred             HHHHhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHH-HHHHHhccCC
Q 038516          156 LLGMYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSM-LLNACSRMGN  231 (708)
Q Consensus       156 li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-ll~~~~~~~~  231 (708)
                      +..++.+.|++++|...+..+.+   ++...+--|..+..-.|.+.+|..+-...      |+...... ++...-+.++
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklnd  136 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLND  136 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCc
Confidence            34455566777777666654433   33444444555555556666666554442      22222222 2333334555


Q ss_pred             hhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHH-HHHHHHcCCCchHHHHHHHHH
Q 038516          232 FVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNS-MIAGYMENGNGEKAVDMFVAL  308 (708)
Q Consensus       232 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~A~~~~~~m  308 (708)
                      -++-..+.+.+...     ..-..+|..+.-..-.+++|+.++.++..  |.-...|. +.-+|.+..-++-+.+++..-
T Consensus       137 Ek~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vY  211 (557)
T KOG3785|consen  137 EKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVY  211 (557)
T ss_pred             HHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHH
Confidence            54444444433221     12223333333333456777777777765  33334443 445677777777777777777


Q ss_pred             HHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhc-----CCChhHHHHHhhcCCCC
Q 038516          309 RRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKN-----GDAESPQKVFMLIAEKD  383 (708)
Q Consensus       309 ~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~  383 (708)
                      .+.  ++.+....+......-+.=+-..+..-...+.+.+-..     -..+.-.++.     ..-+.|++++-.+.+.-
T Consensus       212 L~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-----~~f~~~l~rHNLVvFrngEgALqVLP~L~~~I  284 (557)
T KOG3785|consen  212 LRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-----YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHI  284 (557)
T ss_pred             HHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc-----chhHHHHHHcCeEEEeCCccHHHhchHHHhhC
Confidence            664  33333333433333223222222333333333222111     0112222221     22344555544333322


Q ss_pred             EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHH-----hCcccHHHHHHHHHHHHHhCCCCch-hHH
Q 038516          384 IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSAC-----ADLAILKQGEMIHSQAEKTGHGVEM-SVC  457 (708)
Q Consensus       384 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~-~~~  457 (708)
                      +.+.-.|+--|.+.++..+|..+.+++.-  ..|-......+..+-     .....++-|.+.|+..-.++..-|. .--
T Consensus       285 PEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGR  362 (557)
T KOG3785|consen  285 PEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGR  362 (557)
T ss_pred             hHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccch
Confidence            22333345557788888888888776531  233333322222221     1222344555555555444432221 111


Q ss_pred             HHHHHhhHhcCCHHHHHHHHhhCC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhc
Q 038516          458 GSLVDMYAKNGDLRAAESIFSQVL----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLL-SACSH  532 (708)
Q Consensus       458 ~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~  532 (708)
                      .++...+.-..++++.+-.++.+.    ..|...+| +..+++..|++.+|.++|-+.....++ |..+|.+++ ++|.+
T Consensus       363 QsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~  440 (557)
T KOG3785|consen  363 QSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIR  440 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHh
Confidence            233333333344444444444432    12222222 344455555555555555444332222 333333322 24445


Q ss_pred             cCcHHHHHHHH
Q 038516          533 SGLVERGKILW  543 (708)
Q Consensus       533 ~~~~~~a~~~~  543 (708)
                      .+..+.|+.++
T Consensus       441 nkkP~lAW~~~  451 (557)
T KOG3785|consen  441 NKKPQLAWDMM  451 (557)
T ss_pred             cCCchHHHHHH
Confidence            55555554443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.27  E-value=1.3e-09  Score=110.43  Aligned_cols=230  Identities=21%  Similarity=0.191  Sum_probs=169.2

Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHh-----CC-CCch-hHHHHHHHhhHhcCCHHHHHHHHhhCCC----------
Q 038516          420 FALSGALSACADLAILKQGEMIHSQAEKT-----GH-GVEM-SVCGSLVDMYAKNGDLRAAESIFSQVLH----------  482 (708)
Q Consensus       420 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------  482 (708)
                      .|+..+...|...|+++.|..+++...+.     |. .|.. ...+.+...|...+++++|..+|+++..          
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45555677777777777777777765543     21 1222 2334577888899999999999988731          


Q ss_pred             C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHC-----CC-CCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHC---CC
Q 038516          483 P-DLKCWNALLGGYSHYGMAEEAFMVFEVILEH-----GL-RPDEIT-FLSLLSACSHSGLVERGKILWNQMKEH---SL  551 (708)
Q Consensus       483 ~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~  551 (708)
                      | -..+++.|..+|.+.|++++|..++++..+-     |. .|...+ ++.+...|...+++++|..+++...+.   -.
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            2 2346788888999999999998888877641     21 223222 666777899999999999999987654   12


Q ss_pred             CcC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-------CC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-
Q 038516          552 IPG----HKHYSCMVSLLSRAGLLDEAENLIAES-------PY--SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL-  617 (708)
Q Consensus       552 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-  617 (708)
                      .++    ..+++.|...|...|++++|+++++++       ..  .......++.+...|.+.++...|.++|.++..+ 
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            222    467999999999999999999999887       11  1112456778888899999999999999988753 


Q ss_pred             ---CCCC---cchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          618 ---DPED---GTTHILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       618 ---~p~~---~~~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                         .|++   ..+|..|+.+|..+|++++|.++.+.+.
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence               3444   4568899999999999999999988765

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.26  E-value=1.7e-09  Score=105.34  Aligned_cols=213  Identities=16%  Similarity=0.039  Sum_probs=151.5

Q ss_pred             ccHHHHHHHHHHHHHh-CCCCc--hhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHH
Q 038516          433 AILKQGEMIHSQAEKT-GHGVE--MSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFM  506 (708)
Q Consensus       433 ~~~~~a~~~~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~  506 (708)
                      +..+.+..-+..+... ...|+  ...+..+...|.+.|+.++|...|++..   +.+...|+.+...+...|++++|..
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~  119 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE  119 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            3445555555555542 22222  4567777888999999999999998875   3467899999999999999999999


Q ss_pred             HHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038516          507 VFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYS  584 (708)
Q Consensus       507 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  584 (708)
                      .|++..+  +.|+ ...+..+..++...|++++|.+.|+...+  ..|+..........+...+++++|...+.+. ...
T Consensus       120 ~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        120 AFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            9999998  4675 56677777888999999999999999987  4454332222233455678899999999665 222


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH-------HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          585 EIRIELWRTLLSTCVAKRNSRMVIQAAEQV-------LRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       585 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      +++  .|.. .......|+...+ ..++.+       .++.|+.+.+|..||.+|...|++++|+..|++..+.++
T Consensus       196 ~~~--~~~~-~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        196 DKE--QWGW-NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             Ccc--ccHH-HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            122  2321 1222234544333 233333       356677778999999999999999999999999886543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.25  E-value=3.8e-10  Score=102.60  Aligned_cols=227  Identities=13%  Similarity=0.048  Sum_probs=169.7

Q ss_pred             hhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc
Q 038516          388 TEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKN  467 (708)
Q Consensus       388 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  467 (708)
                      +.+..+|.+.|.+.+|.+.|+.-+..                                     .|-+.+|-.|...|.+.
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q-------------------------------------~~~~dTfllLskvY~ri  269 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ-------------------------------------FPHPDTFLLLSKVYQRI  269 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc-------------------------------------CCchhHHHHHHHHHHHh
Confidence            34566667777777777666665544                                     23334444555666677


Q ss_pred             CCHHHHHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 038516          468 GDLRAAESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWN  544 (708)
Q Consensus       468 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  544 (708)
                      .+.+.|+.+|.+-+  .| |+.....+.+.+-..++.++|.++++...+.. ..|.....++...|.-.++.+-|+.+|+
T Consensus       270 dQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYR  348 (478)
T KOG1129|consen  270 DQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYR  348 (478)
T ss_pred             ccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHH
Confidence            77777777776664  24 33334446667777788888888888888752 3355566666677778888888888888


Q ss_pred             HhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          545 QMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      ++.+.|+. ++..|..+.-++.-.++++-++.-|+++    .....-.++|-.+.......||+..|.+.++-++.-+|+
T Consensus       349 RiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~  427 (478)
T KOG1129|consen  349 RILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ  427 (478)
T ss_pred             HHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence            88887764 5667777888888888888888888776    212234678999988888899999999999999999999


Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          621 DGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       621 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      +...++.|+.+-.+.|+.++|+.++....+..+
T Consensus       428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P  460 (478)
T KOG1129|consen  428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMP  460 (478)
T ss_pred             hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence            999999999999999999999999998877543

>PRK12370 invasion protein regulator; Provisional

Probab=99.23  E-value=4e-09  Score=112.59  Aligned_cols=242  Identities=14%  Similarity=0.076  Sum_probs=172.8

Q ss_pred             ChHHHHHHHHHHhHCCCccCHH-HHHHHHHHHh---------CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcC
Q 038516          399 DGECAIKLFCKMCREGLKCDNF-ALSGALSACA---------DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG  468 (708)
Q Consensus       399 ~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  468 (708)
                      .+++|...|++..+.  .|+.. .+..+..++.         ..+++++|...++...+.. +.+...+..+..++...|
T Consensus       276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            356777888777654  44443 2332222221         3345788888888887765 446777888888899999


Q ss_pred             CHHHHHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHH
Q 038516          469 DLRAAESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWN  544 (708)
Q Consensus       469 ~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~  544 (708)
                      ++++|...|++..  .| +...|..+...+...|++++|+..++++.+.  .|+.. .+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            9999999999875  34 5677888999999999999999999999995  66543 33344445666899999999999


Q ss_pred             HhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC
Q 038516          545 QMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRL---DP  619 (708)
Q Consensus       545 ~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p  619 (708)
                      ++.+.. .| +...+..++.+|...|++++|...+.++....|+ ...+..+...+...|  +.|...++++++.   .|
T Consensus       431 ~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~  507 (553)
T PRK12370        431 ELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID  507 (553)
T ss_pred             HHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence            987642 34 3555777888999999999999999988433344 444555555666666  4777777776654   34


Q ss_pred             CCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          620 EDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       620 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      .++.   .+..+|.-.|+.+.+..+ +++.+.+
T Consensus       508 ~~~~---~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        508 NNPG---LLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             cCch---HHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            4433   367778888888888777 7776543

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.23  E-value=1.4e-07  Score=89.13  Aligned_cols=405  Identities=12%  Similarity=0.041  Sum_probs=251.8

Q ss_pred             hhhHHHHHHhcccCCChHHHHHHHhccCCC-ChhHHHHHHHHHHcCC-CchHHHHHHHHHHHcCCCCCCHhHHHHHHHHH
Q 038516          251 LPLENALLDMYSKCSDTQTAFSVFTRIENP-DLVSWNSMIAGYMENG-NGEKAVDMFVALRRMSLLKPDEYTFAAIISAT  328 (708)
Q Consensus       251 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~  328 (708)
                      .......+.+|...++-+.|..++.+.+.. ....-|.|+.-+.+.| +..++.--+......  .+.-......++.--
T Consensus        97 ~e~~r~~aecy~~~~n~~~Ai~~l~~~p~t~r~p~inlMla~l~~~g~r~~~~vl~ykevvre--cp~aL~~i~~ll~l~  174 (564)
T KOG1174|consen   97 AEQRRRAAECYRQIGNTDMAIETLLQVPPTLRSPRINLMLARLQHHGSRHKEAVLAYKEVIRE--CPMALQVIEALLELG  174 (564)
T ss_pred             HHHHHHHHHHHHHHccchHHHHHHhcCCccccchhHHHHHHHHHhccccccHHHHhhhHHHHh--cchHHHHHHHHHHHh
Confidence            334445566666677888888888777762 2223333333333332 222222222222221  111111111111100


Q ss_pred             cCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHh--cCCChhHHHHHhhcC-----CCCEeeehhhHHHHhcCCChH
Q 038516          329 SALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFK--NGDAESPQKVFMLIA-----EKDIVLWTEMIIGHSRMGDGE  401 (708)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~  401 (708)
                           +..+...-..|-....+|+......-+.+++.  .++-..|...+-.+.     ..|+.....+...+...|+.+
T Consensus       175 -----v~g~e~~S~~m~~~~~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~  249 (564)
T KOG1174|consen  175 -----VNGNEINSLVMHAATVPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYF  249 (564)
T ss_pred             -----hcchhhhhhhhhheecCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCch
Confidence                 01111111122233344544444444444443  334334444333322     236777888899999999999


Q ss_pred             HHHHHHHHHhHCCCccCHHH----HHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHH
Q 038516          402 CAIKLFCKMCREGLKCDNFA----LSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIF  477 (708)
Q Consensus       402 ~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  477 (708)
                      +|...|++..-.  .|+..+    |..++   ...|+.+....+...+.... +.+...|-.-........+++.|..+-
T Consensus       250 ~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL---~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~  323 (564)
T KOG1174|consen  250 QAEDIFSSTLCA--NPDNVEAMDLYAVLL---GQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFV  323 (564)
T ss_pred             HHHHHHHHHhhC--ChhhhhhHHHHHHHH---HhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHH
Confidence            999999987643  454433    33333   45667777766665554322 011111111122233567888999888


Q ss_pred             hhCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc
Q 038516          478 SQVLHP---DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP  553 (708)
Q Consensus       478 ~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  553 (708)
                      ++.++.   ++..|-.-...+.+.|++++|.=.|+..+.  +.| +...|..|+.+|...|++.+|.-+-...... +.-
T Consensus       324 eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~  400 (564)
T KOG1174|consen  324 EKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQN  400 (564)
T ss_pred             HHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhc
Confidence            887643   444554445678899999999999999988  466 6788999999999999999998877766652 223


Q ss_pred             ChHHHHHHH-HHHH-hcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516          554 GHKHYSCMV-SLLS-RAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN  630 (708)
Q Consensus       554 ~~~~~~~l~-~~~~-~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  630 (708)
                      +..+...++ ..+. .-..-++|.+++++.....|+ ......+...|...|..+.++.++++.+...|+. ..+..||+
T Consensus       401 sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~-~LH~~Lgd  479 (564)
T KOG1174|consen  401 SARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDV-NLHNHLGD  479 (564)
T ss_pred             chhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcccc-HHHHHHHH
Confidence            444444442 2222 223458899999998444354 4567777788999999999999999999999975 56999999


Q ss_pred             HHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhh
Q 038516          631 LYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKL  698 (708)
Q Consensus       631 ~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  698 (708)
                      ++...+.+.+|.+.|..+.+.                          .|+.+...+-+.+|.++++++
T Consensus       480 ~~~A~Ne~Q~am~~y~~ALr~--------------------------dP~~~~sl~Gl~~lEK~~~~~  521 (564)
T KOG1174|consen  480 IMRAQNEPQKAMEYYYKALRQ--------------------------DPKSKRTLRGLRLLEKSDDES  521 (564)
T ss_pred             HHHHhhhHHHHHHHHHHHHhc--------------------------CccchHHHHHHHHHHhccCCC
Confidence            999999999999999988764                          688888888888888888765

>PF13041 PPR_2: PPR repeat family

Probab=99.20  E-value=5.3e-11  Score=80.38  Aligned_cols=50  Identities=32%  Similarity=0.654  Sum_probs=46.3

Q ss_pred             CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 038516          483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH  532 (708)
Q Consensus       483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  532 (708)
                      ||+.+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78899999999999999999999999999999999999999999998875

>PF13041 PPR_2: PPR repeat family

Probab=99.20  E-value=3.3e-11  Score=81.41  Aligned_cols=50  Identities=22%  Similarity=0.482  Sum_probs=45.1

Q ss_pred             CCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhcc
Q 038516           77 RSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSL  127 (708)
Q Consensus        77 ~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  127 (708)
                      ||+++||++|.+|++.|+ +++|+++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~-~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGK-FEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            688899999999999999 99999999999999999999999999998874

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.19  E-value=5.8e-09  Score=99.09  Aligned_cols=165  Identities=16%  Similarity=0.169  Sum_probs=141.5

Q ss_pred             ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHH
Q 038516          484 DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMV  562 (708)
Q Consensus       484 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~  562 (708)
                      ....+..+...+...|++++|...++++.+.  .|+ ...+..+...+...|++++|.+.+++..+.. +.+...+..++
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~  106 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYG  106 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence            3567788889999999999999999999885  454 5667778889999999999999999998742 23456778889


Q ss_pred             HHHHhcCCHHHHHHHHHhCCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516          563 SLLSRAGLLDEAENLIAESPYS---EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD  639 (708)
Q Consensus       563 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  639 (708)
                      ..+...|++++|.+.++++...   +.....+..+...+...|++++|...++++++.+|+++..+..++.++...|+++
T Consensus       107 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  186 (234)
T TIGR02521       107 TFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYK  186 (234)
T ss_pred             HHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHH
Confidence            9999999999999999997322   2345677778888999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 038516          640 CVAKMRRKMKGS  651 (708)
Q Consensus       640 eA~~~~~~~~~~  651 (708)
                      +|...+++..+.
T Consensus       187 ~A~~~~~~~~~~  198 (234)
T TIGR02521       187 DARAYLERYQQT  198 (234)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.18  E-value=4.8e-09  Score=112.01  Aligned_cols=212  Identities=13%  Similarity=-0.023  Sum_probs=164.2

Q ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhH---------hcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCC
Q 038516          433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYA---------KNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGM  500 (708)
Q Consensus       433 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~  500 (708)
                      +.+++|...++...+.. +.+...+..+..++.         ..+++++|...+++..   +.+...+..+...+...|+
T Consensus       275 ~~~~~A~~~~~~Al~ld-P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        275 YSLQQALKLLTQCVNMS-PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccC
Confidence            45678888888887654 223445555554443         2345899999999885   3467788888899999999


Q ss_pred             hHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh-HHHHHHHHHHHhcCCHHHHHHHH
Q 038516          501 AEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLDEAENLI  578 (708)
Q Consensus       501 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~  578 (708)
                      +++|...|+++.+.  .|+ ...+..+...+...|++++|...++++.+  +.|+. ..+..++..+...|++++|...+
T Consensus       354 ~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        354 YIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHHH
Confidence            99999999999995  665 55677788899999999999999999998  44543 23334455677789999999999


Q ss_pred             HhCCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          579 AESPYS-EI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       579 ~~~~~~-~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +++... +| ++..+..+..++...|+.++|...++++....|++......++..|...|  ++|...++.+.+.
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLES  502 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence            887322 23 45667778888889999999999999999999998888889999998888  4888877776553

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.17  E-value=4.9e-06  Score=83.70  Aligned_cols=410  Identities=13%  Similarity=0.058  Sum_probs=187.5

Q ss_pred             HhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc-chHHHHHHHHhccCChhHHH
Q 038516          161 SNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ-FSYSMLLNACSRMGNFVCGK  236 (708)
Q Consensus       161 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~  236 (708)
                      ...|+.++|......-.+   .+.+.|..+.-.+-...++++|++.|+.....  .||. ..+.-+.-.-++.++++...
T Consensus        52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--~~dN~qilrDlslLQ~QmRd~~~~~  129 (700)
T KOG1156|consen   52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--EKDNLQILRDLSLLQIQMRDYEGYL  129 (700)
T ss_pred             hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHHhhhhHH
Confidence            334555555544443322   23445555555555555566666666655542  3322 22333333334444554444


Q ss_pred             HHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC-----CChhHHHH------HHHHHHcCCCchHHHHHH
Q 038516          237 VIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN-----PDLVSWNS------MIAGYMENGNGEKAVDMF  305 (708)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~------li~~~~~~g~~~~A~~~~  305 (708)
                      .......+.. +.....|..++.++.-.|+...|..+++...+     ++...+.-      -.....+.|..++|++.+
T Consensus       130 ~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L  208 (700)
T KOG1156|consen  130 ETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL  208 (700)
T ss_pred             HHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence            4444443321 12233444555555555555555555544332     22222221      112334455555555555


Q ss_pred             HHHHHcCCCCCCHhHH-HHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHH-HHHhhcCCCC
Q 038516          306 VALRRMSLLKPDEYTF-AAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQ-KVFMLIAEKD  383 (708)
Q Consensus       306 ~~m~~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~~~~~~  383 (708)
                      ..-...   ..|...+ ..-...+.+.+++++|..++..++..+ |.+...|-.+..++++-.+.-++. .+|....+.-
T Consensus       209 ~~~e~~---i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y  284 (700)
T KOG1156|consen  209 LDNEKQ---IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKY  284 (700)
T ss_pred             HhhhhH---HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcC
Confidence            444322   1222222 222334455566666666666655553 333334444444444222222222 4444433210


Q ss_pred             ---EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHH----HHHHHhC-------
Q 038516          384 ---IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIH----SQAEKTG-------  449 (708)
Q Consensus       384 ---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~----~~~~~~~-------  449 (708)
                         ...-..=+.......-.+..-+++..+.+.|+++-...+.++..-   ....+-..++.    ..+...|       
T Consensus       285 ~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k~~~le~Lvt~y~~~L~~~~~f~~~D~  361 (700)
T KOG1156|consen  285 PRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEKVAFLEKLVTSYQHSLSGTGMFNFLDD  361 (700)
T ss_pred             cccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhHhHHHHHHHHHHHhhcccccCCCcccc
Confidence               000000011111112233444566667777776544444333321   11111111111    1111111       


Q ss_pred             ---CCCchhHHH--HHHHhhHhcCCHHHHHHHHhhCCC--CCh-HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH
Q 038516          450 ---HGVEMSVCG--SLVDMYAKNGDLRAAESIFSQVLH--PDL-KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI  521 (708)
Q Consensus       450 ---~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  521 (708)
                         -+|+...|.  .++..|-+.|+++.|...++....  |+. ..|..=.+.+...|++++|..++++..+.. .||..
T Consensus       362 ~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~  440 (700)
T KOG1156|consen  362 GKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRA  440 (700)
T ss_pred             cccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHH
Confidence               133333333  356666777888888887777763  322 234444466777778888888888777753 34443


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhHCCCC--cChH----HHHHH--HHHHHhcCCHHHHHHHHHhC
Q 038516          522 TFLSLLSACSHSGLVERGKILWNQMKEHSLI--PGHK----HYSCM--VSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~----~~~~l--~~~~~~~g~~~~A~~~~~~~  581 (708)
                      .=.--..-..++++.++|.++.....+.|..  -+..    +|-.+  +.+|.|.|++.+|++=+...
T Consensus       441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i  508 (700)
T KOG1156|consen  441 INSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEI  508 (700)
T ss_pred             HHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhH
Confidence            3223344455667777777777777665431  1111    11111  35677777777776665544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.14  E-value=4.9e-07  Score=92.52  Aligned_cols=445  Identities=14%  Similarity=0.067  Sum_probs=244.1

Q ss_pred             HHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCC----
Q 038516          103 IDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD----  178 (708)
Q Consensus       103 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----  178 (708)
                      +.++....++.|+..|..+--++...|+++.+.+.|++....-+ -....|..+-..|..+|.-..|..+++.-..    
T Consensus       311 ~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~  389 (799)
T KOG4162|consen  311 LRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQ  389 (799)
T ss_pred             HHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccC
Confidence            44444555677888999999999999999999999998876543 3456788888999999999999999876543    


Q ss_pred             CCccc-HHHHHHHHh-cCCChhHHHHHHHHHHhC--CC--CCCcchHHHHHHHHhccC----C-------hhHHHHHHHH
Q 038516          179 KDAVA-WNSIILGNF-KNDKMKEGLSLFGAMVGS--GV--NPTQFSYSMLLNACSRMG----N-------FVCGKVIHAR  241 (708)
Q Consensus       179 ~~~~~-~~~li~~~~-~~g~~~~A~~~~~~m~~~--g~--~p~~~~~~~ll~~~~~~~----~-------~~~a~~~~~~  241 (708)
                      |+..+ +-..-..|. +.+..++++++-.+....  +.  ......|..+--+|...-    .       ..++.+.+++
T Consensus       390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~  469 (799)
T KOG4162|consen  390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEE  469 (799)
T ss_pred             CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHH
Confidence            32222 222223333 457788888887777652  11  112233333333333211    1       1223333333


Q ss_pred             HHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHH
Q 038516          242 VIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTF  321 (708)
Q Consensus       242 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~  321 (708)
                      .++.+. .|                             |++..  .+.--|+..++.+.|++..++..+- +-.-+...|
T Consensus       470 av~~d~-~d-----------------------------p~~if--~lalq~A~~R~l~sAl~~~~eaL~l-~~~~~~~~w  516 (799)
T KOG4162|consen  470 AVQFDP-TD-----------------------------PLVIF--YLALQYAEQRQLTSALDYAREALAL-NRGDSAKAW  516 (799)
T ss_pred             HHhcCC-CC-----------------------------chHHH--HHHHHHHHHHhHHHHHHHHHHHHHh-cCCccHHHH
Confidence            333321 11                             11111  1222233444555555555554444 233344444


Q ss_pred             HHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChH
Q 038516          322 AAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGE  401 (708)
Q Consensus       322 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~  401 (708)
                      ..+.-.+...+++.+|..+.+.....- +.|......-++.-...++.+++......+..    .|... ......++-.
T Consensus       517 hLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~----~we~~-~~~q~~~~~g  590 (799)
T KOG4162|consen  517 HLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLA----LWEAE-YGVQQTLDEG  590 (799)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHH----HHHhh-hhHhhhhhhh
Confidence            444444444555555555544433221 11111111112222234555555444332221    00000 0000111111


Q ss_pred             HHHHHHHHHhHCCCcc--CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhh
Q 038516          402 CAIKLFCKMCREGLKC--DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQ  479 (708)
Q Consensus       402 ~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  479 (708)
                      ...+....+.-.--.|  ...++..+..                                ++..-.+.-..+.....+..
T Consensus       591 ~~~~lk~~l~la~~q~~~a~s~sr~ls~--------------------------------l~a~~~~~~~se~~Lp~s~~  638 (799)
T KOG4162|consen  591 KLLRLKAGLHLALSQPTDAISTSRYLSS--------------------------------LVASQLKSAGSELKLPSSTV  638 (799)
T ss_pred             hhhhhhcccccCcccccccchhhHHHHH--------------------------------HHHhhhhhcccccccCcccc
Confidence            1222221111100011  0111111111                                11100011111111111111


Q ss_pred             CCCCC------hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516          480 VLHPD------LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLI  552 (708)
Q Consensus       480 ~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  552 (708)
                      ...|+      ...|......+...++.++|...+.+....  .| ....|......+...|..++|.+.|.....  +.
T Consensus       639 ~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ld  714 (799)
T KOG4162|consen  639 LPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LD  714 (799)
T ss_pred             cCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cC
Confidence            12222      234666677888889999999888888774  44 455566666678889999999999998876  66


Q ss_pred             cC-hHHHHHHHHHHHhcCCHHHHHH--HHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          553 PG-HKHYSCMVSLLSRAGLLDEAEN--LIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       553 p~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      |+ +....+++.++.+.|+..-|..  ++..+ ...+.+...|..++..+.+.|+.+.|...|+-++++++.+|.
T Consensus       715 P~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  715 PDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             CCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence            75 6778899999999997776666  88777 555467999999999999999999999999999999988774

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=1.1e-05  Score=84.86  Aligned_cols=473  Identities=12%  Similarity=0.062  Sum_probs=257.0

Q ss_pred             HHHHHHHHhccCChHHHHHHHHHHH---HhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCC----CCcccHHH
Q 038516           12 IATLIQICASITSLKRARQIHALVL---TTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPK----RSLVSYNA   84 (708)
Q Consensus        12 ~~~~~~~~~~~~~~~~a~~~~~~~~---~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~   84 (708)
                      ...+.+.|.++|...+|.+.+.++.   +.-..    .+...-.-++..++ .-.++++.+.+..|..    .|..+.-.
T Consensus       609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVh----th~L~pEwLv~yFg-~lsve~s~eclkaml~~NirqNlQi~VQ  683 (1666)
T KOG0985|consen  609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVH----THLLNPEWLVNYFG-SLSVEDSLECLKAMLSANIRQNLQIVVQ  683 (1666)
T ss_pred             HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHH----hccCCHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence            4567788999999999987766543   22211    11112223444444 4477888888888763    34444445


Q ss_pred             HHHHHHhCCCChHHHHHHHHHHHHc-----------CCCCCcchHHHHHHHhccccchHHHHHHHHH------------H
Q 038516           85 LIAAYSRDHDHAHLTFRLIDQMEFE-----------CLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQ------------V  141 (708)
Q Consensus        85 ll~~~~~~~~~~~~a~~~~~~m~~~-----------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~------------~  141 (708)
                      +..-|+.+-. .+.-+++|+.....           ++..|+...-.-|++.++.|.+.+.+++-++            +
T Consensus       684 vatky~eqlg-~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfL  762 (1666)
T KOG0985|consen  684 VATKYHEQLG-AQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL  762 (1666)
T ss_pred             HHHHHHHHhC-HHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHH
Confidence            5555666666 67777888777542           2456666666778888888888777665432            1


Q ss_pred             HHhCC---CC-----chhHHhHHHHHhHhCCChhHHHHHhccCCCC----------------------------CcccHH
Q 038516          142 IKYGS---SE-----DTCVQTSLLGMYSNCGDFESAKRIFGLIGDK----------------------------DAVAWN  185 (708)
Q Consensus       142 ~~~g~---~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----------------------------~~~~~~  185 (708)
                      .+..+   -|     |..-+-.=+-.|.-.++..+-+++|-+-..|                            ....-+
T Consensus       763 keAkL~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~d  842 (1666)
T KOG0985|consen  763 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVD  842 (1666)
T ss_pred             HhccccccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChH
Confidence            11111   01     1111111111222223333333333221111                            112223


Q ss_pred             HHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHH----HHHHHH------HHhCC--------
Q 038516          186 SIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGK----VIHARV------IISNT--------  247 (708)
Q Consensus       186 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~----~~~~~~------~~~~~--------  247 (708)
                      -|..-.-+.++.+--+..++.....|.. +..+++.+.+.|..+++-.+-.    ..++..      .++.+        
T Consensus       843 eLv~EvEkRNRLklLlp~LE~~i~eG~~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYe  921 (1666)
T KOG0985|consen  843 ELVEEVEKRNRLKLLLPWLESLIQEGSQ-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYE  921 (1666)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhccCc-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeec
Confidence            3333444556666677778888888754 8899999999887655432210    011110      01000        


Q ss_pred             -----------CCChhhHHHHHHhcccCCChHHHHHHHhc-----------cC-----C-CChhHHHHHHHHHHcCCCch
Q 038516          248 -----------QVDLPLENALLDMYSKCSDTQTAFSVFTR-----------IE-----N-PDLVSWNSMIAGYMENGNGE  299 (708)
Q Consensus       248 -----------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-----------~~-----~-~~~~~~~~li~~~~~~g~~~  299 (708)
                                 --.-..|..+.+-+.+..+.+.-.+++.+           ..     + .|+..-..-+.++...+-+.
T Consensus       922 rGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~ 1001 (1666)
T KOG0985|consen  922 RGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPN 1001 (1666)
T ss_pred             ccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcH
Confidence                       00011222233333344444433333321           11     1 45566667788888888899


Q ss_pred             HHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHC-----------------------CCCchhHH
Q 038516          300 KAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTG-----------------------YDSSVFVG  356 (708)
Q Consensus       300 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------~~~~~~~~  356 (708)
                      +-+++++++.-....-.....+-.++-.-+-.-+...+..+.+.+-..+                       +..+....
T Consensus      1002 eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~ 1081 (1666)
T KOG0985|consen 1002 ELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAI 1081 (1666)
T ss_pred             HHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHH
Confidence            9999998886441211111222222211111111111212211111111                       12222222


Q ss_pred             hHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHH
Q 038516          357 TTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILK  436 (708)
Q Consensus       357 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  436 (708)
                      +.|+.   .-+.++.|.++-+++.+  +..|+.+..+-.+.|...+|++-|-+.      -|+..|..++..+.+.|.++
T Consensus      1082 ~VLie---~i~~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~e 1150 (1666)
T KOG0985|consen 1082 QVLIE---NIGSLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYE 1150 (1666)
T ss_pred             HHHHH---HhhhHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHH
Confidence            22222   12334444444444433  357899999999999999998877442      36678999999999999999


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 038516          437 QGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMV  507 (708)
Q Consensus       437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  507 (708)
                      +-..++.+..+...+|...+  .|+-+|++.+++.+.++++.   .||......+..-|...|.++.|.-+
T Consensus      1151 dLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~ 1216 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLL 1216 (1666)
T ss_pred             HHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHH
Confidence            99999999988877776554  78999999999988887763   34444444444455555555444433

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.11  E-value=4.3e-06  Score=84.88  Aligned_cols=437  Identities=12%  Similarity=0.104  Sum_probs=252.7

Q ss_pred             HHHHhHhCCChhHHHHHhccCCCCCcc-cHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhH
Q 038516          156 LLGMYSNCGDFESAKRIFGLIGDKDAV-AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVC  234 (708)
Q Consensus       156 li~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  234 (708)
                      .|.+|.....|++|+.+-+....|... .-.+.+.++...|+-+.|-++-         .+.-.-...|..|.+.|.+-.
T Consensus       563 aigmy~~lhkwde~i~lae~~~~p~~eklk~sy~q~l~dt~qd~ka~elk---------~sdgd~laaiqlyika~~p~~  633 (1636)
T KOG3616|consen  563 AIGMYQELHKWDEAIALAEAKGHPALEKLKRSYLQALMDTGQDEKAAELK---------ESDGDGLAAIQLYIKAGKPAK  633 (1636)
T ss_pred             HHHHHHHHHhHHHHHHHHHhcCChHHHHHHHHHHHHHHhcCchhhhhhhc---------cccCccHHHHHHHHHcCCchH
Confidence            455666666677777666554444221 1223344455555555554431         111111234555556665544


Q ss_pred             HHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC
Q 038516          235 GKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLL  314 (708)
Q Consensus       235 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~  314 (708)
                      |......  ...+..|......+..++.+..-+++|-.+|+++..++.     .+.+|-+-.-+-+|+++-+-.     .
T Consensus       634 a~~~a~n--~~~l~~de~il~~ia~alik~elydkagdlfeki~d~dk-----ale~fkkgdaf~kaielarfa-----f  701 (1636)
T KOG3616|consen  634 AARAALN--DEELLADEEILEHIAAALIKGELYDKAGDLFEKIHDFDK-----ALECFKKGDAFGKAIELARFA-----F  701 (1636)
T ss_pred             HHHhhcC--HHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCHHH-----HHHHHHcccHHHHHHHHHHhh-----C
Confidence            4332110  111223444444445555555556666666666654332     222232222334444333211     1


Q ss_pred             CCCHhHHH-HHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEe--eehhhH
Q 038516          315 KPDEYTFA-AIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIV--LWTEMI  391 (708)
Q Consensus       315 ~p~~~t~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li  391 (708)
                      +....++. ..-..+...|+++.|..-|-+...         ....+.+.....+|.+|..+++.+..+++.  -|..+.
T Consensus       702 p~evv~lee~wg~hl~~~~q~daainhfiea~~---------~~kaieaai~akew~kai~ildniqdqk~~s~yy~~ia  772 (1636)
T KOG3616|consen  702 PEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC---------LIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIA  772 (1636)
T ss_pred             cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh---------HHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHH
Confidence            11111111 111222333444444433332211         122344556677888888888888776543  467778


Q ss_pred             HHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHH
Q 038516          392 IGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLR  471 (708)
Q Consensus       392 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  471 (708)
                      ..|...|+++.|.++|.+.-         .+.-.+..|.+.|.|+.|.++-....  |.......|-+-..-+-+.|++.
T Consensus       773 dhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~  841 (1636)
T KOG3616|consen  773 DHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFA  841 (1636)
T ss_pred             HHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchh
Confidence            88999999999999886531         24456777889999988877755442  33445556666667777899999


Q ss_pred             HHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhhHC
Q 038516          472 AAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD--EITFLSLLSACSHSGLVERGKILWNQMKEH  549 (708)
Q Consensus       472 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  549 (708)
                      +|.++|-.+..|+..     |..|-+.|..+..+++.++-     .|+  ..|...+..-+...|+...|..-|-+..+ 
T Consensus       842 eaeqlyiti~~p~~a-----iqmydk~~~~ddmirlv~k~-----h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d-  910 (1636)
T KOG3616|consen  842 EAEQLYITIGEPDKA-----IQMYDKHGLDDDMIRLVEKH-----HGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD-  910 (1636)
T ss_pred             hhhheeEEccCchHH-----HHHHHhhCcchHHHHHHHHh-----ChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhh-
Confidence            999999888888753     67889999999988887764     344  34566677788889999999988776654 


Q ss_pred             CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC---HHHHHHH------HHHHHhcCCHHHHHHHH------HHH
Q 038516          550 SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR---IELWRTL------LSTCVAKRNSRMVIQAA------EQV  614 (708)
Q Consensus       550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~l------~~~~~~~~~~~~a~~~~------~~~  614 (708)
                              |.+-++.|...+.|++|.++-+.-...+..   ...|..-      ...+.++|-++.|....      +-+
T Consensus       911 --------~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~a  982 (1636)
T KOG3616|consen  911 --------FKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFA  982 (1636)
T ss_pred             --------HHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhH
Confidence                    667778898999999998887654322111   1122211      12233455555444331      112


Q ss_pred             Hh-----cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          615 LR-----LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       615 ~~-----~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      ++     .....+..+..++..+...|++++|.+-+-+..+.+
T Consensus       983 fdlari~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen  983 FDLARIAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred             HHHHHHhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence            21     223445678888888999999999987776665543

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.10  E-value=5.6e-08  Score=94.78  Aligned_cols=230  Identities=14%  Similarity=-0.030  Sum_probs=159.0

Q ss_pred             cCCChHHHHHHHHHHhHCC-CccCH--HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHH
Q 038516          396 RMGDGECAIKLFCKMCREG-LKCDN--FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRA  472 (708)
Q Consensus       396 ~~~~~~~A~~~~~~m~~~g-~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  472 (708)
                      ..+..+.++.-+.+++... ..|+.  ..|...-..+...|+.+.|...+....+.. +.+...++.+...+...|++++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~  116 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA  116 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            3456677777777777532 22322  345556666778899999988888887764 4567889999999999999999


Q ss_pred             HHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC
Q 038516          473 AESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH  549 (708)
Q Consensus       473 A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  549 (708)
                      |...|+...  .| +..+|..+..++...|++++|++.|++..+.  .|+..........+...++.++|...|++....
T Consensus       117 A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        117 AYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            999999885  34 5678888999999999999999999999984  665543222233345678899999999776542


Q ss_pred             CCCcChHHHHHHHHHHHhcCCHHH--HHHHHHhCCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-CC
Q 038516          550 SLIPGHKHYSCMVSLLSRAGLLDE--AENLIAESPYS-----EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP-ED  621 (708)
Q Consensus       550 ~~~p~~~~~~~l~~~~~~~g~~~~--A~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~  621 (708)
                       ..|+...+ .++.  ...|+..+  +.+.+.+....     +.....|..++..+...|+.++|+..|+++++.+| +.
T Consensus       195 -~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~  270 (296)
T PRK11189        195 -LDKEQWGW-NIVE--FYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF  270 (296)
T ss_pred             -CCccccHH-HHHH--HHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence             23332222 2333  33555443  33333322111     11346788999999999999999999999999997 44


Q ss_pred             cchHHHHHHHH
Q 038516          622 GTTHILLSNLY  632 (708)
Q Consensus       622 ~~~~~~l~~~~  632 (708)
                      ......+..+.
T Consensus       271 ~e~~~~~~e~~  281 (296)
T PRK11189        271 VEHRYALLELA  281 (296)
T ss_pred             HHHHHHHHHHH
Confidence            44444444433

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.09  E-value=1.9e-06  Score=86.63  Aligned_cols=122  Identities=14%  Similarity=0.073  Sum_probs=63.3

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHh
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYS-EIRIELWRTLLSTCVA  600 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~  600 (708)
                      +..+...+-+.|+++.|..+++..+.  ..|+ ++.|-.-++.+...|.+++|..+++++..- .+|..+=..-+....+
T Consensus       374 ~y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLr  451 (700)
T KOG1156|consen  374 LYFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLR  451 (700)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            33445556666677777666666664  4555 344545556666666777777766666322 1222222233333344


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCcc-------hHHHH--HHHHHhcCCchHHHHHHH
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDGT-------THILL--SNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l--~~~~~~~g~~~eA~~~~~  646 (708)
                      .++.++|..++.+.-+-.-+-..       .|..+  |.+|.++|++.+|.+-|.
T Consensus       452 An~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh  506 (700)
T KOG1156|consen  452 ANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFH  506 (700)
T ss_pred             ccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHh
Confidence            56666666665554433221000       12222  456666777766665443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=1.4e-09  Score=98.96  Aligned_cols=235  Identities=11%  Similarity=0.040  Sum_probs=187.0

Q ss_pred             hHHHHHHHhcCCChhHHHHHhhcCC--CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc
Q 038516          357 TTLLNMYFKNGDAESPQKVFMLIAE--KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI  434 (708)
Q Consensus       357 ~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  434 (708)
                      +.+.++|.+.|.+.+|++.|+...+  +-+.+|-.|-.+|.+..+++.|+.++.+-.+.  .|..+||..          
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~----------  294 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLL----------  294 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhh----------
Confidence            5678899999999999999987654  46778888899999999999999999877654  666666531          


Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038516          435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVI  511 (708)
Q Consensus       435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m  511 (708)
                                              -..+.+...++.++|.++|+...+   .++....++...|.-.++++-|+.+++++
T Consensus       295 ------------------------g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRi  350 (478)
T KOG1129|consen  295 ------------------------GQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRI  350 (478)
T ss_pred             ------------------------hhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHH
Confidence                                    233344455667777777776643   35556666777888899999999999999


Q ss_pred             HHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCH
Q 038516          512 LEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRI  588 (708)
Q Consensus       512 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~  588 (708)
                      ++.|+. +...|+.+.-+|.-.++++-++.-|++....--.|+  ..+|..+.......|++.-|.+.|+-+.. .+...
T Consensus       351 LqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~  429 (478)
T KOG1129|consen  351 LQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG  429 (478)
T ss_pred             HHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence            999865 777888888899999999999999999887644444  56788899999999999999999988743 33457


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516          589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL  628 (708)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  628 (708)
                      +.++.|.-.-.+.|++++|..++..+..+.|+-......|
T Consensus       430 ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl  469 (478)
T KOG1129|consen  430 EALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNL  469 (478)
T ss_pred             HHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccce
Confidence            8899998888899999999999999999999866554443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.06  E-value=2.2e-06  Score=79.44  Aligned_cols=442  Identities=11%  Similarity=0.096  Sum_probs=222.9

Q ss_pred             hHhCCChhHHHHHhccCCC---CCcccHH-HHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHH
Q 038516          160 YSNCGDFESAKRIFGLIGD---KDAVAWN-SIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCG  235 (708)
Q Consensus       160 ~~~~g~~~~A~~~~~~~~~---~~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  235 (708)
                      +....|+..|+.+++--..   ......+ -+..++...|++++|+..|.-+.+.. .|+......|..+..-.|...+|
T Consensus        32 fls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA  110 (557)
T KOG3785|consen   32 FLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEA  110 (557)
T ss_pred             HHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHH
Confidence            3445677777777654322   1111222 24467788999999999999887743 55666666666666677888888


Q ss_pred             HHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCC
Q 038516          236 KVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLK  315 (708)
Q Consensus       236 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~  315 (708)
                      +.+....     +.++-.-..|.....+.++-.+-...-+.+... ..---+|.......-.+.+|+++|..+...   .
T Consensus       111 ~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d---n  181 (557)
T KOG3785|consen  111 KSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-LEDQLSLASVHYMRMHYQEAIDVYKRVLQD---N  181 (557)
T ss_pred             HHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence            7776542     223333444555566677766666555555432 222233444444445688999999998865   5


Q ss_pred             CCHhHHHHHHHHH-cCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHH
Q 038516          316 PDEYTFAAIISAT-SALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGH  394 (708)
Q Consensus       316 p~~~t~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~  394 (708)
                      |+-...+.-+..| .+..-++.+.+++.-.... ++.++...|.......+.=.-..|+.-.+++...-...|. .+.-+
T Consensus       182 ~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~-f~~~l  259 (557)
T KOG3785|consen  182 PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYP-FIEYL  259 (557)
T ss_pred             hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccch-hHHHH
Confidence            6666666655544 4555556666666655543 3444555555544444432222222222222221111111 11112


Q ss_pred             hcC-----CChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhh-----
Q 038516          395 SRM-----GDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMY-----  464 (708)
Q Consensus       395 ~~~-----~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----  464 (708)
                      +++     .+-+.|++++-.+.+.  -|..  -..++-.+.+.+++++|..+.+.+..  ..|-..+...++.+-     
T Consensus       260 ~rHNLVvFrngEgALqVLP~L~~~--IPEA--RlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~  333 (557)
T KOG3785|consen  260 CRHNLVVFRNGEGALQVLPSLMKH--IPEA--RLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQET  333 (557)
T ss_pred             HHcCeEEEeCCccHHHhchHHHhh--ChHh--hhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhc
Confidence            221     2335566665444321  2221  11233345566666666655544321  112222222222111     


Q ss_pred             HhcCCHHHHHHHHhhCC-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHH
Q 038516          465 AKNGDLRAAESIFSQVL-----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERG  539 (708)
Q Consensus       465 ~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  539 (708)
                      .....+.-|.+.|+-.-     ..++..-.++...+.-..++++.+.++.....--...|...| .+..+.+..|.+.+|
T Consensus       334 gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~ea  412 (557)
T KOG3785|consen  334 GSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEA  412 (557)
T ss_pred             CcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHH
Confidence            11112334444444331     123333444555555555666666666665554222222222 344566666666666


Q ss_pred             HHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516          540 KILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  619 (708)
                      .++|-.+....++-+..-...|+++|.+.|+.+-|.+++-++......-..+..+..-|.+.+.+--|-+++..+-.++|
T Consensus       413 Eelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP  492 (557)
T KOG3785|consen  413 EELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP  492 (557)
T ss_pred             HHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence            66666554323332233333455666666666666666655532211223334444556666666666666666555655


Q ss_pred             C
Q 038516          620 E  620 (708)
Q Consensus       620 ~  620 (708)
                      .
T Consensus       493 ~  493 (557)
T KOG3785|consen  493 T  493 (557)
T ss_pred             C
Confidence            4

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.06  E-value=1.4e-07  Score=95.74  Aligned_cols=160  Identities=20%  Similarity=0.203  Sum_probs=106.3

Q ss_pred             HHHHHHhhHhcCCHHHHHHHHhhCC----------CCChH-HHHHHHHHHHhcCChHHHHHHHHHHHHC---CCCCCh--
Q 038516          457 CGSLVDMYAKNGDLRAAESIFSQVL----------HPDLK-CWNALLGGYSHYGMAEEAFMVFEVILEH---GLRPDE--  520 (708)
Q Consensus       457 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~--  520 (708)
                      ++.|..+|.+.|++++|...++...          .|.+. .++.++..+...+++++|..++++..+.   -+.++.  
T Consensus       286 l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~  365 (508)
T KOG1840|consen  286 LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVN  365 (508)
T ss_pred             HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchH
Confidence            3344445555555555544444331          12222 3455666677777888887777766542   122332  


Q ss_pred             --HHHHHHHHHHhccCcHHHHHHHHHHhhHC------CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC--------CC
Q 038516          521 --ITFLSLLSACSHSGLVERGKILWNQMKEH------SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES--------PY  583 (708)
Q Consensus       521 --~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~  583 (708)
                        .+++.|...|.+.|++++|.+++++++..      +..+. ...++.|...|.+.+++++|.++|.+.        +.
T Consensus       366 ~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~  445 (508)
T KOG1840|consen  366 LAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPD  445 (508)
T ss_pred             HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCC
Confidence              45778888888899999999888887654      11222 456778888888888888888887765        33


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516          584 SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR  616 (708)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  616 (708)
                      .+.....+..|...|...|+++.|+++.+.+..
T Consensus       446 ~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  446 HPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             CCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            322356688899999999999999999888874

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.05  E-value=3e-05  Score=79.02  Aligned_cols=82  Identities=13%  Similarity=0.122  Sum_probs=55.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHH-hcCCCCcchHHHHHHHHHhc-C-
Q 038516          561 MVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLST-CVAKRNSRMVIQAAEQVL-RLDPEDGTTHILLSNLYAAT-G-  636 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~-g-  636 (708)
                      -++.+...++|++|++.-.+-..+ |-..-|..+..+ +.+.|+...+..++++-- -.+|.|-.+|-.+..-.... | 
T Consensus      1298 aidl~ien~qwdk~idtak~qnyk-pil~kyva~yaa~li~~~d~aq~lal~~q~ga~anpanfniyk~i~ed~lakpgt 1376 (1636)
T KOG3616|consen 1298 AIDLMIENDQWDKAIDTAKKQNYK-PILDKYVALYAAHLIHEGDLAQALALLEQHGAPANPANFNIYKLIFEDMLAKPGT 1376 (1636)
T ss_pred             HHHHHHhcccHHHHHHHHHhcccH-HHHHHHHHHHHHHHHhcCcHHHHHHHHHHhCCCCCcccccHHHHHHHHHhcCCCc
Confidence            468899999999999888776555 545555555444 566899999999888653 35777777777654433332 2 


Q ss_pred             CchHHHH
Q 038516          637 RWDCVAK  643 (708)
Q Consensus       637 ~~~eA~~  643 (708)
                      +.+||-.
T Consensus      1377 ~~~eay~ 1383 (1636)
T KOG3616|consen 1377 NCAEAYH 1383 (1636)
T ss_pred             chHHHHH
Confidence            5555543

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.04  E-value=5.1e-06  Score=85.51  Aligned_cols=539  Identities=12%  Similarity=0.086  Sum_probs=269.1

Q ss_pred             cchhhHHHH--HHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHc-C-------C-CCCcc
Q 038516           48 PYMYNNVLS--MYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFE-C-------L-RPNGL  116 (708)
Q Consensus        48 ~~~~~~li~--~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~-g-------~-~p~~~  116 (708)
                      +.+...+++  .|..-|+.+.|.+-.+-++.  -..|..|.+.+.+..+ .+-|.-.+-.|... |       . .|+ .
T Consensus       726 ~~TRkaml~FSfyvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~R-LDVAkVClGhm~~aRgaRAlR~a~q~~~-e  801 (1416)
T KOG3617|consen  726 ESTRKAMLDFSFYVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRR-LDVAKVCLGHMKNARGARALRRAQQNGE-E  801 (1416)
T ss_pred             HHHHHhhhceeEEEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhcc-ccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence            334444443  35667888888777776663  4567888877777777 66666555555321 1       1 121 2


Q ss_pred             hHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCC-CcccHHHHHHHHhcCC
Q 038516          117 TFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDK-DAVAWNSIILGNFKND  195 (708)
Q Consensus       117 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~g  195 (708)
                      +=..+.-.....|.+++|+.++++-.+..         .|-+.|...|.|++|.++-+.-.+- =..+|......+-..+
T Consensus       802 ~eakvAvLAieLgMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~  872 (1416)
T KOG3617|consen  802 DEAKVAVLAIELGMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARR  872 (1416)
T ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhc
Confidence            22222223346788888888888877653         4566778889999998887654432 1234555556666677


Q ss_pred             ChhHHHHHHHHHH----------hCC---------CCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHH
Q 038516          196 KMKEGLSLFGAMV----------GSG---------VNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENA  256 (708)
Q Consensus       196 ~~~~A~~~~~~m~----------~~g---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  256 (708)
                      +.+.|++.|++-.          ...         -.-|...|..--.-+-..|+.+.|..+|....         -|-.
T Consensus       873 Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~---------D~fs  943 (1416)
T KOG3617|consen  873 DIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK---------DYFS  943 (1416)
T ss_pred             cHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh---------hhhh
Confidence            8888888776531          111         01122223333333345566666666655433         3456


Q ss_pred             HHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCC-----
Q 038516          257 LLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSAL-----  331 (708)
Q Consensus       257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~-----  331 (708)
                      +++..|-.|+.++|-++-++-  .|....-.|.+.|-..|++.+|...|.+...          |...|+.|-..     
T Consensus       944 ~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa----------fsnAIRlcKEnd~~d~ 1011 (1416)
T KOG3617|consen  944 MVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA----------FSNAIRLCKENDMKDR 1011 (1416)
T ss_pred             heeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH----------HHHHHHHHHhcCHHHH
Confidence            667777778888887766553  4555666677888888888888888876643          23333332211     


Q ss_pred             --------C--CccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC--------------CCEeee
Q 038516          332 --------P--ASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE--------------KDIVLW  387 (708)
Q Consensus       332 --------~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--------------~~~~~~  387 (708)
                              +  +.-.|-++|++.   |.     -....+..|-+.|.+.+|+++--+-.+              .|+...
T Consensus      1012 L~nlal~s~~~d~v~aArYyEe~---g~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll 1083 (1416)
T KOG3617|consen 1012 LANLALMSGGSDLVSAARYYEEL---GG-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLL 1083 (1416)
T ss_pred             HHHHHhhcCchhHHHHHHHHHHc---ch-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHH
Confidence                    1  122222233221   10     011223445555655555544222111              122223


Q ss_pred             hhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHH--hCCCC---chhHHHHHHH
Q 038516          388 TEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEK--TGHGV---EMSVCGSLVD  462 (708)
Q Consensus       388 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~---~~~~~~~l~~  462 (708)
                      +.-..-++.+.++++|..++-...+         |.-.+..|...+ +.-..++-+.|.-  .+..+   -..+...+..
T Consensus      1084 ~RcadFF~~~~qyekAV~lL~~ar~---------~~~AlqlC~~~n-v~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae 1153 (1416)
T KOG3617|consen 1084 RRCADFFENNQQYEKAVNLLCLARE---------FSGALQLCKNRN-VRVTEEFAELMTPTKDDMPNEQERKQVLEQVAE 1153 (1416)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHH---------HHHHHHHHhcCC-CchhHHHHHhcCcCcCCCccHHHHHHHHHHHHH
Confidence            3333334444555555554433221         222222232221 1111111122210  01111   1234445566


Q ss_pred             hhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHH-------------HHHHHHCCCCCChHHHHHHHHH
Q 038516          463 MYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMV-------------FEVILEHGLRPDEITFLSLLSA  529 (708)
Q Consensus       463 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~-------------~~~m~~~g~~p~~~~~~~ll~~  529 (708)
                      .|.++|.+..|-+-|.+.-..     -..++++.+.|+.++..-.             -+-+.....+.|..+...++.-
T Consensus      1154 ~c~qQG~Yh~AtKKfTQAGdK-----l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tF 1228 (1416)
T KOG3617|consen 1154 LCLQQGAYHAATKKFTQAGDK-----LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETF 1228 (1416)
T ss_pred             HHHhccchHHHHHHHhhhhhH-----HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhh
Confidence            666677666666655443211     1123445555554432100             0011112234444455555544


Q ss_pred             HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHH----------
Q 038516          530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCV----------  599 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~----------  599 (708)
                      |.+..-++-.-.+|+....  +  ....|..+-.   ..|-+++|.+.+.++..+......++.|-.-..          
T Consensus      1229 YTKgqafd~LanFY~~cAq--i--Eiee~q~ydK---a~gAl~eA~kCl~ka~~k~~~~t~l~~Lq~~~a~vk~~l~~~q 1301 (1416)
T KOG3617|consen 1229 YTKGQAFDHLANFYKSCAQ--I--EIEELQTYDK---AMGALEEAAKCLLKAEQKNMSTTGLDALQEDLAKVKVQLRKLQ 1301 (1416)
T ss_pred             hhcchhHHHHHHHHHHHHH--h--hHHHHhhhhH---HhHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444333333333333221  0  1111111111   124456666666666544223333333322111          


Q ss_pred             h-cCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          600 A-KRNSRMVIQAAEQVLRLDPEDG------TTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       600 ~-~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      . ..|......-++.+++ .|..+      ..|..|+..|....+|.+|-+.+..|+.+
T Consensus      1302 ~~~eD~~~~i~qc~~lle-ep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1302 IMKEDAADGIRQCTTLLE-EPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred             HhhhhHHHHHHHHHHHhh-CcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence            1 2255555555555554 34333      34778899999999999999999999865

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.03  E-value=2.6e-06  Score=84.65  Aligned_cols=248  Identities=14%  Similarity=0.125  Sum_probs=118.6

Q ss_pred             HHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHH---HHcCCCCccch--HHHHHHHHH-----------HCCCC
Q 038516          288 MIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIIS---ATSALPASAYG--KPLHALVIK-----------TGYDS  351 (708)
Q Consensus       288 li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~---~~~~~~~~~~a--~~~~~~~~~-----------~~~~~  351 (708)
                      |.-.+...|+-++|..+|....+.  .++|........+   +.....++-..  ...++....           ..-.-
T Consensus       230 layVlQ~~Gqt~ea~~iy~~~i~~--~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~  307 (652)
T KOG2376|consen  230 LAYVLQLQGQTAEASSIYVDIIKR--NPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQ  307 (652)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHh--cCCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            445566789999999999888876  4566544333222   22222222221  111111100           00011


Q ss_pred             chhHHhHHHHHHHhcCCChhHHHHHhhcCCCC-EeeehhhHHHHhc--CCChHHHHHHHHHHhHCCCccCH--HHHHHHH
Q 038516          352 SVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD-IVLWTEMIIGHSR--MGDGECAIKLFCKMCREGLKCDN--FALSGAL  426 (708)
Q Consensus       352 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~--~~~~~~A~~~~~~m~~~g~~p~~--~t~~~ll  426 (708)
                      ....-+.++..|.  +..+.+.++...++... ...+..++....+  ...+..+.+++...-+.  .|..  ......+
T Consensus       308 ~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~a  383 (652)
T KOG2376|consen  308 AIYRNNALLALFT--NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRA  383 (652)
T ss_pred             HHHHHHHHHHHHh--hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHH
Confidence            1111123333332  33445555554444432 2233333333222  22355666666555443  2332  3333444


Q ss_pred             HHHhCcccHHHHHHHHH--------HHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC------CCC----hHHH
Q 038516          427 SACADLAILKQGEMIHS--------QAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL------HPD----LKCW  488 (708)
Q Consensus       427 ~~~~~~~~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~----~~~~  488 (708)
                      ......|+++.|.+++.        .+.+.+  ..+.+...++..+.+.++.+.|..++.+.+      .+.    ..+|
T Consensus       384 Ql~is~gn~~~A~~il~~~~~~~~ss~~~~~--~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~  461 (652)
T KOG2376|consen  384 QLKISQGNPEVALEILSLFLESWKSSILEAK--HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLM  461 (652)
T ss_pred             HHHHhcCCHHHHHHHHHHHhhhhhhhhhhhc--cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHH
Confidence            44566777777777766        333333  233445566666666666666666665442      111    1223


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHH
Q 038516          489 NALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQ  545 (708)
Q Consensus       489 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  545 (708)
                      ..+...-.+.|+-++|..+++++.+.. ++|..+...++.+|++. +.+.|..+-+.
T Consensus       462 ~~aa~f~lr~G~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~  516 (652)
T KOG2376|consen  462 REAAEFKLRHGNEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK  516 (652)
T ss_pred             HHHhHHHHhcCchHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence            333333445566666666666666642 44556666666666554 44555544433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.99  E-value=1.7e-08  Score=99.72  Aligned_cols=213  Identities=17%  Similarity=0.154  Sum_probs=157.7

Q ss_pred             cccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHH
Q 038516          432 LAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVF  508 (708)
Q Consensus       432 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~  508 (708)
                      .|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+.++   .|....-.|.-.|...|.-..|++.+
T Consensus       298 nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L  376 (579)
T KOG1125|consen  298 NGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKML  376 (579)
T ss_pred             cCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            344445544555444443 33455566666666667777777777777653   35667777778888888888999998


Q ss_pred             HHHHHCCCCCChHHHHHHH-----------HHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHH
Q 038516          509 EVILEHGLRPDEITFLSLL-----------SACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAEN  576 (708)
Q Consensus       509 ~~m~~~g~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~  576 (708)
                      ++-+...  |-.   ..+.           ..+..........++|-.+... +..+|+.+...|+-.|.-.|++++|.+
T Consensus       377 ~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD  451 (579)
T KOG1125|consen  377 DKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD  451 (579)
T ss_pred             HHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence            8887642  111   0000           1223333445555555555444 666888889999999999999999999


Q ss_pred             HHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          577 LIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       577 ~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      .|+.+ ..+|.|..+|+.|+..++...+.++|+.+|.+++++.|.-..++..||..|...|.|+||.+.|-.+..
T Consensus       452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            99998 555457888999999999999999999999999999999999999999999999999999998876644

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=9.5e-07  Score=86.85  Aligned_cols=409  Identities=13%  Similarity=0.059  Sum_probs=215.9

Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CC-hhHHHHHHHHHHcCCCchH
Q 038516          224 NACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PD-LVSWNSMIAGYMENGNGEK  300 (708)
Q Consensus       224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~  300 (708)
                      ++....|+++.|...|-+.+... ++|...|..-..+|++.|++++|.+=-.+-.+  |+ ...|+-...++.-.|++++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence            45677899999999998888775 34778888888899999999888765444433  33 3568888888888899999


Q ss_pred             HHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCc---cchHHHHHHHHHHC---CCCchhHHhHHHHHHHh---------
Q 038516          301 AVDMFVALRRMSLLKPDEYTFAAIISATSALPAS---AYGKPLHALVIKTG---YDSSVFVGTTLLNMYFK---------  365 (708)
Q Consensus       301 A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~---~~~~~~~~~~li~~~~~---------  365 (708)
                      |+.-|.+=.+.  .+.+...+..+..+.......   -..-.++..+...-   .......|..++..+-+         
T Consensus        89 A~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l  166 (539)
T KOG0548|consen   89 AILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYL  166 (539)
T ss_pred             HHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhccc
Confidence            99999887764  445556666666665111000   00000111000000   00000111111111110         


Q ss_pred             -cCCChhHHHHHhhcCCCCEeeehhhHHHHh-cCCChH----HHHHHHHHHhH-CCCccCHHHHHHHHHHHhCcccHHHH
Q 038516          366 -NGDAESPQKVFMLIAEKDIVLWTEMIIGHS-RMGDGE----CAIKLFCKMCR-EGLKCDNFALSGALSACADLAILKQG  438 (708)
Q Consensus       366 -~g~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~~~~~----~A~~~~~~m~~-~g~~p~~~t~~~ll~~~~~~~~~~~a  438 (708)
                       -.++..+.-.+......   .+...-.... ....+.    .......++.+ ....--..-...+.++..+..++..+
T Consensus       167 ~d~r~m~a~~~l~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a  243 (539)
T KOG0548|consen  167 NDPRLMKADGQLKGVDEL---LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA  243 (539)
T ss_pred             ccHHHHHHHHHHhcCccc---cccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence             00011111111000000   0000000000 000000    00000000000 00000011123344444455556666


Q ss_pred             HHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCC---hHHHHH-------HHHHHHhcCChHHHHHHH
Q 038516          439 EMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPD---LKCWNA-------LLGGYSHYGMAEEAFMVF  508 (708)
Q Consensus       439 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~-------li~~~~~~g~~~~A~~~~  508 (708)
                      .+-+.......  .+..-++....+|...|.+..+...-+...+..   ..-|+.       +..+|.+.++++.++..|
T Consensus       244 ~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~  321 (539)
T KOG0548|consen  244 IQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYY  321 (539)
T ss_pred             HHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHH
Confidence            66555555544  444555566666666666666655554443211   111222       333555667777777777


Q ss_pred             HHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCC
Q 038516          509 EVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLDEAENLIAESPY-SEI  586 (708)
Q Consensus       509 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~  586 (708)
                      ++.+..-..||.         ..+....+++....+...-  +.|.. .-...-+..+.+.|++.+|...|.++-. .|.
T Consensus       322 ~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~  390 (539)
T KOG0548|consen  322 QKALTEHRTPDL---------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE  390 (539)
T ss_pred             HHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc
Confidence            776654334332         1222333444443333322  23332 1112225667788888888888888733 334


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      |...|.....+|.+.|++..|+.-++..++++|+....|..-+.++....+|++|.+.+.+.++.
T Consensus       391 Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~  455 (539)
T KOG0548|consen  391 DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL  455 (539)
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            56677777778888888888888888888888888888888888888888888888888877654

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.97  E-value=2.7e-08  Score=95.32  Aligned_cols=192  Identities=13%  Similarity=0.046  Sum_probs=114.7

Q ss_pred             CCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-CC---ChHHHH-HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH
Q 038516          451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-HP---DLKCWN-ALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLS  525 (708)
Q Consensus       451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~---~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  525 (708)
                      .|.......+...+...++-+.+..-+++.. .+   +..++. .....+...|++++|++++.+.      .+......
T Consensus        63 ~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al  136 (290)
T PF04733_consen   63 SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLAL  136 (290)
T ss_dssp             SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHH
T ss_pred             ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHH
Confidence            4444444444444443344555555554443 11   111222 2223445567777777766542      24455566


Q ss_pred             HHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH----HHhcCCHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHh
Q 038516          526 LLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL----LSRAGLLDEAENLIAESPYS-EIRIELWRTLLSTCVA  600 (708)
Q Consensus       526 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~  600 (708)
                      .+..+.+.++++.|.+.++.|.+  +..|. +...|+.+    +.-.+.+.+|..+|+++... ++++.+++.++.++..
T Consensus       137 ~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~  213 (290)
T PF04733_consen  137 AVQILLKMNRPDLAEKELKNMQQ--IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQ  213 (290)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHC--CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh--cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence            66677777777777777777765  22332 22223332    22233678888888887433 3567777778778888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc-hHHHHHHHHHhcC
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRW-DCVAKMRRKMKGS  651 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~eA~~~~~~~~~~  651 (708)
                      .|++++|+..++++++.+|+++.+...++-+....|+. +++.+++.+++..
T Consensus       214 ~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  214 LGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             CT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             hCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            88888888888888888888888888888888888888 5567778777654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.97  E-value=1e-05  Score=83.35  Aligned_cols=222  Identities=15%  Similarity=0.056  Sum_probs=143.8

Q ss_pred             HhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCC-----------CcccHHHHHH
Q 038516           19 CASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKR-----------SLVSYNALIA   87 (708)
Q Consensus        19 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~ll~   87 (708)
                      |...|+...|.+-...+          .+..+|..+..+|.+..+++-|.-.+-.|...           +..--..-..
T Consensus       738 yvtiG~MD~AfksI~~I----------kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvA  807 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFI----------KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVA  807 (1416)
T ss_pred             EEEeccHHHHHHHHHHH----------hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHH
Confidence            34445555555444333          46678999999999999999998888887621           1111111222


Q ss_pred             H-HHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCCh
Q 038516           88 A-YSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDF  166 (708)
Q Consensus        88 ~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~  166 (708)
                      + -.+.|. .++|..+|++-++.         ..+=+.|-..|.+.+|.++-+.--+..+   ..+|-....-+-..+|.
T Consensus       808 vLAieLgM-lEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di  874 (1416)
T KOG3617|consen  808 VLAIELGM-LEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDI  874 (1416)
T ss_pred             HHHHHHhh-HHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccH
Confidence            2 234566 88999999887763         3344455567888888877553222221   23444455555566788


Q ss_pred             hHHHHHhccCCC-----------------------CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHH
Q 038516          167 ESAKRIFGLIGD-----------------------KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLL  223 (708)
Q Consensus       167 ~~A~~~~~~~~~-----------------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  223 (708)
                      +.|++.|+....                       +|...|.--...+-..|+.+.|+.+|...++         |-.++
T Consensus       875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~V  945 (1416)
T KOG3617|consen  875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMV  945 (1416)
T ss_pred             HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhe
Confidence            888888765432                       2444455555556677888899988888765         56677


Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccC
Q 038516          224 NACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIE  278 (708)
Q Consensus       224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  278 (708)
                      +..|-.|+.++|.++-++      .-|....-.|.+.|-..|++.+|...|.+..
T Consensus       946 rI~C~qGk~~kAa~iA~e------sgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  946 RIKCIQGKTDKAARIAEE------SGDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             eeEeeccCchHHHHHHHh------cccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            777788888888777654      2355566677788888888888888776653

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.96  E-value=2.6e-06  Score=77.18  Aligned_cols=404  Identities=12%  Similarity=0.085  Sum_probs=210.5

Q ss_pred             hHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHH-HHHHHHc
Q 038516          218 SYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNS-MIAGYME  294 (708)
Q Consensus       218 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~-li~~~~~  294 (708)
                      -+..++..+.+..++..+.+++....+.. +.+....+.|..+|-...++..|-..++++..  |...-|.. -.+.+.+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYK   90 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH
Confidence            34455555555555666665555544442 22444455556666666666677666666654  44443432 3456677


Q ss_pred             CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHH--HcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhH
Q 038516          295 NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISA--TSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESP  372 (708)
Q Consensus       295 ~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A  372 (708)
                      .+.+.+|+.+...|.+.    |+...-..-+.+  .-..+++..+..+.++....   .+..+.+.......+.|+++.|
T Consensus        91 A~i~ADALrV~~~~~D~----~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEaA  163 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDN----PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEAA  163 (459)
T ss_pred             hcccHHHHHHHHHhcCC----HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHHH
Confidence            88888888888877543    332222222222  22445555555555543321   1333334444445566666666


Q ss_pred             HHHHhhcCCC----CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHH----HHHHHHHHHhCcccHHHHHHHHHH
Q 038516          373 QKVFMLIAEK----DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNF----ALSGALSACADLAILKQGEMIHSQ  444 (708)
Q Consensus       373 ~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~  444 (708)
                      .+-|+...+-    ....||.-+ +..+.|++..|++...+++++|++-.+.    ..+-.+++ ...|+.   ..++  
T Consensus       164 vqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~lh--  236 (459)
T KOG4340|consen  164 VQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LVLH--  236 (459)
T ss_pred             HHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HHHH--
Confidence            6666655442    223344333 2334456666666666666666532110    00000000 000000   0000  


Q ss_pred             HHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-
Q 038516          445 AEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-  518 (708)
Q Consensus       445 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-  518 (708)
                        .+   --...+|.-...+.+.|+++.|.+.+-+|++     .|++|...+.-.-. .+++.+..+-+.-+.+.  .| 
T Consensus       237 --~S---al~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~--nPf  308 (459)
T KOG4340|consen  237 --QS---ALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQ--NPF  308 (459)
T ss_pred             --HH---HHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhc--CCC
Confidence              00   0011233333455688999999999999973     46777666543322 34555555555556554  34 


Q ss_pred             ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCC-CcChHHHHHHHHHHHh-cCCHHHHHHHHHhCCCCCCCHHHHHHHHH
Q 038516          519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSL-IPGHKHYSCMVSLLSR-AGLLDEAENLIAESPYSEIRIELWRTLLS  596 (708)
Q Consensus       519 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~l~~  596 (708)
                      -..||..++-.|++..-++.|-.++.+=..... -.+...|+ |++++.- .-..++|.+-++.+...  -..-++.+..
T Consensus       309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~--l~~kLRklAi  385 (459)
T KOG4340|consen  309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGM--LTEKLRKLAI  385 (459)
T ss_pred             ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHH--HHHHHHHHHH
Confidence            467899999999999999988887765332211 11233344 3444443 34667777666554211  0111222211


Q ss_pred             -H--HHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          597 -T--CVAKRN---SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       597 -~--~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                       .  -+..++   ...++.-+++.+++-   -.+....+++|+...++.-+.+.|+.-.+
T Consensus       386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  386 QVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHHHHHh
Confidence             1  111221   223344455555541   12356778999999999999999986654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.95  E-value=2.7e-06  Score=87.78  Aligned_cols=176  Identities=14%  Similarity=0.057  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh----C----------CCCchh--HHHHHHHhhH
Q 038516          402 CAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKT----G----------HGVEMS--VCGSLVDMYA  465 (708)
Q Consensus       402 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~----------~~~~~~--~~~~l~~~~~  465 (708)
                      .+...+..+..+|+++-   |+.+-..|......+....++......    +          -+|+..  ++.-+...|-
T Consensus       129 ~~~~yl~~~l~KgvPsl---F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd  205 (517)
T PF12569_consen  129 RLDEYLRPQLRKGVPSL---FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYD  205 (517)
T ss_pred             HHHHHHHHHHhcCCchH---HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHH
Confidence            44556677777786643   333444444444444444554443321    1          123332  3345567777


Q ss_pred             hcCCHHHHHHHHhhCC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 038516          466 KNGDLRAAESIFSQVL--HPD-LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKIL  542 (708)
Q Consensus       466 ~~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  542 (708)
                      ..|++++|.+.++..+  .|+ +..|..-.+.+-+.|++.+|.+.++....... -|...=+-....+.++|++++|.++
T Consensus       206 ~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~  284 (517)
T PF12569_consen  206 YLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKT  284 (517)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHH
Confidence            8888888888888775  344 56777778888888888888888888888532 2445455556677888888888888


Q ss_pred             HHHhhHCCCCcChHH------H--HHHHHHHHhcCCHHHHHHHHHhC
Q 038516          543 WNQMKEHSLIPGHKH------Y--SCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       543 ~~~~~~~~~~p~~~~------~--~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      +......+..|....      |  .-.+.+|.|.|++..|++.+...
T Consensus       285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v  331 (517)
T PF12569_consen  285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV  331 (517)
T ss_pred             HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            888876654443221      1  22467788888888888776544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.94  E-value=2.6e-07  Score=80.78  Aligned_cols=190  Identities=12%  Similarity=0.044  Sum_probs=142.3

Q ss_pred             HHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccC
Q 038516          459 SLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSG  534 (708)
Q Consensus       459 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~  534 (708)
                      .|.-.|...|+...|..-+++.++   .+..+|..+...|.+.|+.+.|.+.|++.+..  .|+ ....|....-+|..|
T Consensus        40 qLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~qg  117 (250)
T COG3063          40 QLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQG  117 (250)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhCC
Confidence            456678888888888888888763   34567888888888888888888888888884  564 455777777778888


Q ss_pred             cHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516          535 LVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAE  612 (708)
Q Consensus       535 ~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  612 (708)
                      ++++|...|++......-|. ..+|..++-+..++|+.+.|.+.+++... .+..+.....+.......|++-.|...++
T Consensus       118 ~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         118 RPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             ChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHHH
Confidence            88888888888887633332 56788888888888888888888888732 22345566677777778888888888888


Q ss_pred             HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          613 QVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       613 ~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      +.....+-....+...+++-...|+-+.|-++-..+.+
T Consensus       198 ~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         198 RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            88877776666666667777778888888777666654

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.89  E-value=1.1e-06  Score=90.69  Aligned_cols=282  Identities=14%  Similarity=0.097  Sum_probs=146.0

Q ss_pred             HHHHhcCCChhHHHHHhhcCCC--C-EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHh----C--
Q 038516          361 NMYFKNGDAESPQKVFMLIAEK--D-IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACA----D--  431 (708)
Q Consensus       361 ~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~----~--  431 (708)
                      ..+...|++++|++.+..-...  | ..........+.+.|+.++|..+|..+++.  .|+...|...+..|.    .  
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--NPdn~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR--NPDNYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHhhhcccc
Confidence            3445556666666666554332  2 223344555666667777777777776665  355555555444443    1  


Q ss_pred             cccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHH-HHHHHHhhCCCCCh-HHHHHHHHHHHhcCChHHHHHHHH
Q 038516          432 LAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLR-AAESIFSQVLHPDL-KCWNALLGGYSHYGMAEEAFMVFE  509 (708)
Q Consensus       432 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~  509 (708)
                      ....+....+++.+...-  |.......+.-.+.....+. .+...+..+....+ .+|+.+-..|....+..-..+++.
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~  167 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE  167 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence            123455555566554432  22222222222222211222 22222233333332 344444444554444444444444


Q ss_pred             HHHHC----C----------CCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHH
Q 038516          510 VILEH----G----------LRPDE--ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLD  572 (708)
Q Consensus       510 ~m~~~----g----------~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~  572 (708)
                      .....    +          -.|..  .++..+...|...|++++|++++++.++  ..|+ +..|..-++.|-+.|+++
T Consensus       168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--htPt~~ely~~KarilKh~G~~~  245 (517)
T PF12569_consen  168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--HTPTLVELYMTKARILKHAGDLK  245 (517)
T ss_pred             HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHCCCHH
Confidence            44322    1          01222  2334445566777777777777777776  4565 566777777777777777


Q ss_pred             HHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC--CCcc-----hH--HHHHHHHHhcCCchHHH
Q 038516          573 EAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP--EDGT-----TH--ILLSNLYAATGRWDCVA  642 (708)
Q Consensus       573 ~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~-----~~--~~l~~~~~~~g~~~eA~  642 (708)
                      +|.+.++.+....+ |..+=+.....+.+.|+.++|+..+......+-  ...-     .|  .-.|.+|.+.|++..|.
T Consensus       246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~AL  325 (517)
T PF12569_consen  246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLAL  325 (517)
T ss_pred             HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            77777777733323 333333344445667777777777666544431  1100     12  24567777788887777


Q ss_pred             HHHHHH
Q 038516          643 KMRRKM  648 (708)
Q Consensus       643 ~~~~~~  648 (708)
                      +.+...
T Consensus       326 k~~~~v  331 (517)
T PF12569_consen  326 KRFHAV  331 (517)
T ss_pred             HHHHHH
Confidence            655544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.87  E-value=2.6e-05  Score=82.36  Aligned_cols=373  Identities=13%  Similarity=0.088  Sum_probs=192.2

Q ss_pred             HHHHHHHHHHHhcCCCCCCCC-cchhhHHHHHHhccCChHHHHHHhhcCCC---CCcccHHHHHHHHHhCCCChHHHHHH
Q 038516           27 RARQIHALVLTTNHIPINAQS-PYMYNNVLSMYGRCGSIRDARQVFDEIPK---RSLVSYNALIAAYSRDHDHAHLTFRL  102 (708)
Q Consensus        27 ~a~~~~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~~a~~~  102 (708)
                      .+..++..+....++    ++ ..+|..|...|....+...|.+.|+..-+   .+..++......|++..+ ++.|..+
T Consensus       474 ~~~al~ali~alrld----~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~-we~a~~I  548 (1238)
T KOG1127|consen  474 SALALHALIRALRLD----VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEEST-WEEAFEI  548 (1238)
T ss_pred             HHHHHHHHHHHHhcc----cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhcccc-HHHHHHH
Confidence            344455555555555    33 35788888888888888888888887643   355677788888888888 8888877


Q ss_pred             HHHHHHcCC-CCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCc
Q 038516          103 IDQMEFECL-RPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDA  181 (708)
Q Consensus       103 ~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~  181 (708)
                      .-..-+... ..-...|..+--.+...++...+..-++...+.. +.|...|..+..+|.++|.+..|.++|.....-++
T Consensus       549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP  627 (1238)
T KOG1127|consen  549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP  627 (1238)
T ss_pred             HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc
Confidence            333322210 0011122222233456667777766666665554 45677888999999999999999999976665333


Q ss_pred             ccHHH---HHHHHhcCCChhHHHHHHHHHHhC------CCCCCcchHHHHHHHHhccCCh-------hHHHHHHHHHHHh
Q 038516          182 VAWNS---IILGNFKNDKMKEGLSLFGAMVGS------GVNPTQFSYSMLLNACSRMGNF-------VCGKVIHARVIIS  245 (708)
Q Consensus       182 ~~~~~---li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~ll~~~~~~~~~-------~~a~~~~~~~~~~  245 (708)
                      ..+-.   .....+..|.+.+|+..+......      +..--..++......+...|=.       +.+.+.+--...+
T Consensus       628 ~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h  707 (1238)
T KOG1127|consen  628 LSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIH  707 (1238)
T ss_pred             HhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence            22221   122345668888888777665431      1111122222222222222211       2222222222222


Q ss_pred             CC--------------------CCC---hhhHHHHHHhcccCCCh---H---HHHHHHhccCC--CChhHHHHHHHHHHc
Q 038516          246 NT--------------------QVD---LPLENALLDMYSKCSDT---Q---TAFSVFTRIEN--PDLVSWNSMIAGYME  294 (708)
Q Consensus       246 ~~--------------------~~~---~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~--~~~~~~~~li~~~~~  294 (708)
                      ..                    .|+   ......|..-.-+.+..   +   -+.+.+-.-.+  .+..+|..++..|.+
T Consensus       708 ~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr  787 (1238)
T KOG1127|consen  708 SLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLR  787 (1238)
T ss_pred             hhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHH
Confidence            11                    122   11111111101111111   1   00010000000  234455555554443


Q ss_pred             ----C----CCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhc
Q 038516          295 ----N----GNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKN  366 (708)
Q Consensus       295 ----~----g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  366 (708)
                          .    .+...|+..+.+..+.  ..-+..+|+.+ ......|++.-+..-|-.-.... +.+..+|..+.-.+.+.
T Consensus       788 ~f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaL-GVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n  863 (1238)
T KOG1127|consen  788 YFLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNAL-GVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLEN  863 (1238)
T ss_pred             HHHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHH-HHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEec
Confidence                1    1223566666666543  23334444443 33455566666555544433332 45566777777777777


Q ss_pred             CCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHH
Q 038516          367 GDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCK  409 (708)
Q Consensus       367 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~  409 (708)
                      .+++.|...|.....-   |...|--.....-..|+.-++..+|..
T Consensus       864 ~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH  909 (1238)
T KOG1127|consen  864 QDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH  909 (1238)
T ss_pred             ccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence            8888888888776653   333443333333445555555555544

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.87  E-value=2e-07  Score=89.31  Aligned_cols=157  Identities=11%  Similarity=0.098  Sum_probs=118.4

Q ss_pred             HHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcH
Q 038516          461 VDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH----SGLV  536 (708)
Q Consensus       461 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~  536 (708)
                      ..++...|++++|++++...  .+.......+..|.+.++++.|.+.++.|.+.  ..|. +...+..++..    .+.+
T Consensus       109 A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~~  183 (290)
T PF04733_consen  109 ATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEKY  183 (290)
T ss_dssp             HHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchhH
Confidence            34566788999998888765  55667777888999999999999999999873  4443 44444444432    3479


Q ss_pred             HHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 038516          537 ERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNS-RMVIQAAEQV  614 (708)
Q Consensus       537 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~  614 (708)
                      .+|..+|+++.+ ...+++.+.+.++.+....|++++|.++++++.. .+.++.++..++......|+. +.+.+.+.++
T Consensus       184 ~~A~y~f~El~~-~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL  262 (290)
T PF04733_consen  184 QDAFYIFEELSD-KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL  262 (290)
T ss_dssp             CHHHHHHHHHHC-CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred             HHHHHHHHHHHh-ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence            999999999876 4567888899999999999999999999988733 334577777887777778877 7788999999


Q ss_pred             HhcCCCCcc
Q 038516          615 LRLDPEDGT  623 (708)
Q Consensus       615 ~~~~p~~~~  623 (708)
                      ...+|+++.
T Consensus       263 ~~~~p~h~~  271 (290)
T PF04733_consen  263 KQSNPNHPL  271 (290)
T ss_dssp             HHHTTTSHH
T ss_pred             HHhCCCChH
Confidence            999998764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.86  E-value=3.3e-06  Score=83.15  Aligned_cols=431  Identities=13%  Similarity=0.046  Sum_probs=252.9

Q ss_pred             HHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCC-hhhHHHHHHhcccCCCh
Q 038516          189 LGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVD-LPLENALLDMYSKCSDT  267 (708)
Q Consensus       189 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~  267 (708)
                      ++.+..|+++.|+..|.+..... ++|...|+.=..+++..|++++|.+=-.+.++.  .|+ ...|+....++.-.|++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~   86 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDY   86 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccH
Confidence            56778999999999999988754 337788999999999999999887665555543  455 35688888888889999


Q ss_pred             HHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHH-HHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHH
Q 038516          268 QTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKA-VDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHAL  343 (708)
Q Consensus       268 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~  343 (708)
                      ++|...|.+-.+   .+...++-+..++.    .+.+ .+.|..-.-..++.-++.|-..+-+     ..+   ..++..
T Consensus        87 ~eA~~ay~~GL~~d~~n~~L~~gl~~a~~----~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~-----~~~---~~~l~~  154 (539)
T KOG0548|consen   87 EEAILAYSEGLEKDPSNKQLKTGLAQAYL----EDYAADQLFTKPYFHEKLANLPLTNYSLSD-----PAY---VKILEI  154 (539)
T ss_pred             HHHHHHHHHHhhcCCchHHHHHhHHHhhh----HHHHhhhhccCcHHHHHhhcChhhhhhhcc-----HHH---HHHHHH
Confidence            999999988765   34456666766661    1111 1111110000012222222111110     000   011111


Q ss_pred             HHHHCCCCchhHH---hHHHHHHHhcCCChhH-HHHH------------hhcCCC---------------CEeeehhhHH
Q 038516          344 VIKTGYDSSVFVG---TTLLNMYFKNGDAESP-QKVF------------MLIAEK---------------DIVLWTEMII  392 (708)
Q Consensus       344 ~~~~~~~~~~~~~---~~li~~~~~~g~~~~A-~~~~------------~~~~~~---------------~~~~~~~li~  392 (708)
                      +.. + +.+...|   ..++.+.......+.- ...-            ..+.++               -..-...+..
T Consensus       155 ~~~-~-p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgn  232 (539)
T KOG0548|consen  155 IQK-N-PTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGN  232 (539)
T ss_pred             hhc-C-cHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHH
Confidence            110 0 0000000   0111111111000000 0000            000000               0012344666


Q ss_pred             HHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCC------chhHHHHHHHhhHh
Q 038516          393 GHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGV------EMSVCGSLVDMYAK  466 (708)
Q Consensus       393 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~  466 (708)
                      +..+..++..|++-+.......  -+..-++..-.++...|.+......-....+.|...      =...+..+..+|.+
T Consensus       233 aaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k  310 (539)
T KOG0548|consen  233 AAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTK  310 (539)
T ss_pred             HHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhh
Confidence            6777788888888888777654  333334444445666666665555444443333211      11122234457778


Q ss_pred             cCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHH
Q 038516          467 NGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQ  545 (708)
Q Consensus       467 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~  545 (708)
                      .++++.|+..|.+.+.+...     -....+....++++...+...-  +.|.... ...-...+.+.|++..|+..|.+
T Consensus       311 ~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte  383 (539)
T KOG0548|consen  311 REDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTE  383 (539)
T ss_pred             HHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            88999999999886532111     1122233445556655555544  3454322 23335678899999999999999


Q ss_pred             hhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516          546 MKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT  624 (708)
Q Consensus       546 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  624 (708)
                      +++.. +-|...|..-.-+|.+.|.+.+|++-.+.... .++....|..-+.++....+++.|...|+++++++|++..+
T Consensus       384 AIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~  462 (539)
T KOG0548|consen  384 AIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEA  462 (539)
T ss_pred             HHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHH
Confidence            99854 33578899999999999999999988777633 32345566666777788899999999999999999999998


Q ss_pred             HHHHHHHHHhcCCchHHHHHHH
Q 038516          625 HILLSNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       625 ~~~l~~~~~~~g~~~eA~~~~~  646 (708)
                      ...+.+++..+.......++.+
T Consensus       463 ~~~~~rc~~a~~~~~~~ee~~~  484 (539)
T KOG0548|consen  463 IDGYRRCVEAQRGDETPEETKR  484 (539)
T ss_pred             HHHHHHHHHHhhcCCCHHHHHH
Confidence            8888888776533333344433

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.86  E-value=1.1e-07  Score=81.26  Aligned_cols=94  Identities=10%  Similarity=-0.120  Sum_probs=66.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG  636 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  636 (708)
                      +..++..+...|++++|...++.+ ...+.+...|..++.++...|++++|...++++++++|+++.++..+|.++...|
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence            444566667777777777777766 3333456667777777777777777777777777777777777777777777777


Q ss_pred             CchHHHHHHHHHhcC
Q 038516          637 RWDCVAKMRRKMKGS  651 (708)
Q Consensus       637 ~~~eA~~~~~~~~~~  651 (708)
                      ++++|+..++...+.
T Consensus       107 ~~~eAi~~~~~Al~~  121 (144)
T PRK15359        107 EPGLAREAFQTAIKM  121 (144)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            777777777766554

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.84  E-value=5.6e-06  Score=84.16  Aligned_cols=257  Identities=11%  Similarity=-0.026  Sum_probs=157.7

Q ss_pred             HHHhcCCChHHHHHHHHHHhHCCCccCHH-HHHH---HHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc
Q 038516          392 IGHSRMGDGECAIKLFCKMCREGLKCDNF-ALSG---ALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKN  467 (708)
Q Consensus       392 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  467 (708)
                      ..+...|++++|.+.+++..+.  .|+.. .+..   ........+....+.+.+.. .....+........+...+...
T Consensus        51 ~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~  127 (355)
T cd05804          51 LSAWIAGDLPKALALLEQLLDD--YPRDLLALKLHLGAFGLGDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEA  127 (355)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHhHHHHHhcccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHc
Confidence            3455678888888888887765  33332 3221   11111223444444444443 1111222334445566788889


Q ss_pred             CCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCh--HHHHHHHHHHhccCcHHHHHH
Q 038516          468 GDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGL-RPDE--ITFLSLLSACSHSGLVERGKI  541 (708)
Q Consensus       468 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~--~~~~~ll~~~~~~~~~~~a~~  541 (708)
                      |++++|...+++..   +.+...+..+...+...|++++|..++++...... .|+.  ..|..+...+...|++++|..
T Consensus       128 G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~  207 (355)
T cd05804         128 GQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALA  207 (355)
T ss_pred             CCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999998875   34567788888899999999999999999887521 1232  234567778889999999999


Q ss_pred             HHHHhhHCCC-CcChHHH-H--HHHHHHHhcCCHHHHHHH---HHhC-CC-C-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038516          542 LWNQMKEHSL-IPGHKHY-S--CMVSLLSRAGLLDEAENL---IAES-PY-S-EIRIELWRTLLSTCVAKRNSRMVIQAA  611 (708)
Q Consensus       542 ~~~~~~~~~~-~p~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~-~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~  611 (708)
                      +++++..... .+..... +  .+...+...|....+.+.   .... +. . ............++...|+.+.|...+
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L  287 (355)
T cd05804         208 IYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL  287 (355)
T ss_pred             HHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence            9999864321 1211111 1  333444445533333332   1111 11 1 111222234555667789999999999


Q ss_pred             HHHHhcCCC---------CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          612 EQVLRLDPE---------DGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       612 ~~~~~~~p~---------~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +.+....-.         ........+.++...|++++|.+.+......
T Consensus       288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            887653211         2344567788899999999999999887654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.79  E-value=5.9e-07  Score=81.26  Aligned_cols=149  Identities=11%  Similarity=0.059  Sum_probs=114.4

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516          492 LGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL  571 (708)
Q Consensus       492 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  571 (708)
                      +..|...|+++.+....+++..    |.        ..+...++.+++...++...+. -+.+...|..|+..|...|++
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~-~P~~~~~w~~Lg~~~~~~g~~   89 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA-NPQNSEQWALLGEYYLWRNDY   89 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHCCCH
Confidence            3467788888776544432221    11        0222366677777777777762 234577899999999999999


Q ss_pred             HHHHHHHHhC-CCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516          572 DEAENLIAES-PYSEIRIELWRTLLSTC-VAKRN--SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       572 ~~A~~~~~~~-~~~~~~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~  647 (708)
                      ++|...++++ ...+.+..++..+..++ ...|+  .++|.+.++++++.+|+++.++..++..+...|++++|+..+++
T Consensus        90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~  169 (198)
T PRK10370         90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK  169 (198)
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999998 44435788888888764 66676  59999999999999999999999999999999999999999999


Q ss_pred             HhcCCC
Q 038516          648 MKGSML  653 (708)
Q Consensus       648 ~~~~~~  653 (708)
                      +.+...
T Consensus       170 aL~l~~  175 (198)
T PRK10370        170 VLDLNS  175 (198)
T ss_pred             HHhhCC
Confidence            987644

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.79  E-value=0.00013  Score=77.28  Aligned_cols=178  Identities=10%  Similarity=-0.018  Sum_probs=126.0

Q ss_pred             CChHHHHHHhhcCCCCC---cccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHH
Q 038516           62 GSIRDARQVFDEIPKRS---LVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLH  138 (708)
Q Consensus        62 g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  138 (708)
                      .+...|...|-+..+.|   ...|..|-..|....+ ...|...|+...+-. ..+......+...++...+++.|..+.
T Consensus       472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~D-m~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~  549 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDD-MKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEIC  549 (1238)
T ss_pred             hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHH
Confidence            34778888776654433   3468888888888777 889999999988753 345567888899999999999998882


Q ss_pred             HHHHHhC-CCCchhHHhHHHHHhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCC
Q 038516          139 AQVIKYG-SSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNP  214 (708)
Q Consensus       139 ~~~~~~g-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  214 (708)
                      -..-+.. ...-..-|..+--.|.+.++...|..-|+..-+   .|...|..+..+|.+.|++..|+++|.+...  +.|
T Consensus       550 l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP  627 (1238)
T KOG1127|consen  550 LRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP  627 (1238)
T ss_pred             HHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence            2221111 111222334455567788999999998886654   4778899999999999999999999998876  455


Q ss_pred             CcchHHHH--HHHHhccCChhHHHHHHHHHHH
Q 038516          215 TQFSYSML--LNACSRMGNFVCGKVIHARVII  244 (708)
Q Consensus       215 ~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~  244 (708)
                      +. +|...  ....+..|...++...+..+..
T Consensus       628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~  658 (1238)
T KOG1127|consen  628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIY  658 (1238)
T ss_pred             Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            43 22222  2233577888888888877654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.79  E-value=4.9e-07  Score=85.67  Aligned_cols=179  Identities=12%  Similarity=0.046  Sum_probs=113.1

Q ss_pred             chhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CC-h---HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH----H
Q 038516          453 EMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PD-L---KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI----T  522 (708)
Q Consensus       453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~  522 (708)
                      ....+-.+...+...|++++|...|+++..  |+ .   ..+..+..++...|++++|...++++.+.  .|+..    +
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence            444555666677777777777777776642  22 1   35566677777777777777777777764  34322    2


Q ss_pred             HHHHHHHHhcc--------CcHHHHHHHHHHhhHCCCCcChH-HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHH
Q 038516          523 FLSLLSACSHS--------GLVERGKILWNQMKEHSLIPGHK-HYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRT  593 (708)
Q Consensus       523 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  593 (708)
                      +..+..++...        |++++|.+.++.+.+.  .|+.. .+..+...    +......            ......
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~----~~~~~~~------------~~~~~~  171 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM----DYLRNRL------------AGKELY  171 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH----HHHHHHH------------HHHHHH
Confidence            33333344433        5667777777776652  33321 12111111    0000000            011124


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDG---TTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +...+...|+++.|...++++++..|+++   .++..++.+|...|++++|..+++.+...
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            55667889999999999999999977754   67899999999999999999999988654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.78  E-value=1.8e-07  Score=79.90  Aligned_cols=124  Identities=10%  Similarity=0.020  Sum_probs=102.0

Q ss_pred             HHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-C
Q 038516          505 FMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-P  582 (708)
Q Consensus       505 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  582 (708)
                      ..++++.++  +.|+.  +..+...+...|++++|...|+.+..  ..| +...+..++.++.+.|++++|...|+++ .
T Consensus        13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            356666666  35654  44566678889999999999999887  445 5778888999999999999999999998 3


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516          583 YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA  634 (708)
Q Consensus       583 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  634 (708)
                      ..+.++..+..++.++...|+.++|...+++++++.|+++..+..++.+...
T Consensus        87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            3435788899999999999999999999999999999999999888876644

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.77  E-value=1.7e-07  Score=78.19  Aligned_cols=118  Identities=11%  Similarity=0.061  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      ....-.+...+...|++++|.++|+-. ...+.+...|..|+.+|...|++++|+..|.++..++|+++.++.+++.+|.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            444556778888999999999999988 3443468889999999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHH
Q 038516          634 ATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNM  695 (708)
Q Consensus       634 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  695 (708)
                      ..|+.++|++.|+......-                       .||+..++..+-+.+-..+
T Consensus       115 ~lG~~~~A~~aF~~Ai~~~~-----------------------~~~~~~~l~~~A~~~L~~l  153 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRICG-----------------------EVSEHQILRQRAEKMLQQL  153 (157)
T ss_pred             HcCCHHHHHHHHHHHHHHhc-----------------------cChhHHHHHHHHHHHHHHh
Confidence            99999999999998876421                       3678777777666655444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.63  E-value=0.0001  Score=85.33  Aligned_cols=363  Identities=12%  Similarity=-0.004  Sum_probs=214.7

Q ss_pred             HHhcccCCChHHHHHHHhccCCCChhH--HHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCcc
Q 038516          258 LDMYSKCSDTQTAFSVFTRIENPDLVS--WNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASA  335 (708)
Q Consensus       258 ~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~  335 (708)
                      ...+...|++.+|..........+...  ...........|+++.+..++..+... ....+..........+...++++
T Consensus       348 a~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~-~~~~~~~l~~~~a~~~~~~g~~~  426 (903)
T PRK04841        348 AEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWE-VLLENPRLVLLQAWLAQSQHRYS  426 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHH-HHhcCcchHHHHHHHHHHCCCHH
Confidence            344556677777766666554432211  111223345567777777776655322 11112222233334445678888


Q ss_pred             chHHHHHHHHHHCC------CCc--hhHHhHHHHHHHhcCCChhHHHHHhhcCC--C--CE----eeehhhHHHHhcCCC
Q 038516          336 YGKPLHALVIKTGY------DSS--VFVGTTLLNMYFKNGDAESPQKVFMLIAE--K--DI----VLWTEMIIGHSRMGD  399 (708)
Q Consensus       336 ~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~--~~----~~~~~li~~~~~~~~  399 (708)
                      ++..++......--      .+.  ......+...+...|+++.|...+++...  +  +.    ...+.+...+...|+
T Consensus       427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~  506 (903)
T PRK04841        427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE  506 (903)
T ss_pred             HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence            88888877654311      111  12222334456678899999888877543  1  11    233455666778899


Q ss_pred             hHHHHHHHHHHhHCCC-----ccCHHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCCCC---chhHHHHHHHhhHhc
Q 038516          400 GECAIKLFCKMCREGL-----KCDNFALSGALSACADLAILKQGEMIHSQAEK----TGHGV---EMSVCGSLVDMYAKN  467 (708)
Q Consensus       400 ~~~A~~~~~~m~~~g~-----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~~~~~l~~~~~~~  467 (708)
                      +++|...+++.....-     .+...+...+...+...|+++.|...+.....    .+...   ....+..+...+...
T Consensus       507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~  586 (903)
T PRK04841        507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW  586 (903)
T ss_pred             HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence            9999998888764211     11123444455567788999999888776554    22211   223344556667778


Q ss_pred             CCHHHHHHHHhhCCC------C--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHH-----HHHHHHHhcc
Q 038516          468 GDLRAAESIFSQVLH------P--DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITF-----LSLLSACSHS  533 (708)
Q Consensus       468 g~~~~A~~~~~~~~~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~-----~~ll~~~~~~  533 (708)
                      |++++|...+.+...      +  ....+..+...+...|++++|...++++....-.. ....+     ...+..+...
T Consensus       587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  666 (903)
T PRK04841        587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT  666 (903)
T ss_pred             cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence            999999988877631      1  13344456667888999999999988886521111 11111     1112344557


Q ss_pred             CcHHHHHHHHHHhhHCCCCcC---hHHHHHHHHHHHhcCCHHHHHHHHHhCC-----CCCC--CHHHHHHHHHHHHhcCC
Q 038516          534 GLVERGKILWNQMKEHSLIPG---HKHYSCMVSLLSRAGLLDEAENLIAESP-----YSEI--RIELWRTLLSTCVAKRN  603 (708)
Q Consensus       534 ~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~--~~~~~~~l~~~~~~~~~  603 (708)
                      |+.+.|.+++...........   ...+..+..++...|++++|...++++.     ...+  ....+..+..++...|+
T Consensus       667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~  746 (903)
T PRK04841        667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGR  746 (903)
T ss_pred             CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCC
Confidence            889999888777654211111   1113456778889999999998888761     1101  12345556667888999


Q ss_pred             HHHHHHHHHHHHhcCCCC
Q 038516          604 SRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       604 ~~~a~~~~~~~~~~~p~~  621 (708)
                      .++|...+.+++++....
T Consensus       747 ~~~A~~~L~~Al~la~~~  764 (903)
T PRK04841        747 KSEAQRVLLEALKLANRT  764 (903)
T ss_pred             HHHHHHHHHHHHHHhCcc
Confidence            999999999999876443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.63  E-value=2.8e-05  Score=89.87  Aligned_cols=362  Identities=11%  Similarity=-0.046  Sum_probs=221.5

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHcCCCCCCH-hHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHh
Q 038516          287 SMIAGYMENGNGEKAVDMFVALRRMSLLKPDE-YTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFK  365 (708)
Q Consensus       287 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  365 (708)
                      .....+...|++.+|...+......    +.. .............|+.+.+..++..+.......+..........+..
T Consensus       346 raa~~~~~~g~~~~Al~~a~~a~d~----~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~  421 (903)
T PRK04841        346 AAAEAWLAQGFPSEAIHHALAAGDA----QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS  421 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCH----HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence            3445566777777776655433211    100 11111222334556666666666554221112223333444555677


Q ss_pred             cCCChhHHHHHhhcCC----CC---E-----eeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCH----HHHHHHHHHH
Q 038516          366 NGDAESPQKVFMLIAE----KD---I-----VLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDN----FALSGALSAC  429 (708)
Q Consensus       366 ~g~~~~A~~~~~~~~~----~~---~-----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~  429 (708)
                      .|+++++...+.....    .+   .     .....+...+...|++++|...+++....-...+.    .....+...+
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~  501 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVH  501 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHH
Confidence            8899998888875532    11   1     01112234456789999999999987763111121    2334445556


Q ss_pred             hCcccHHHHHHHHHHHHHhCC---CC--chhHHHHHHHhhHhcCCHHHHHHHHhhCCC-------C----ChHHHHHHHH
Q 038516          430 ADLAILKQGEMIHSQAEKTGH---GV--EMSVCGSLVDMYAKNGDLRAAESIFSQVLH-------P----DLKCWNALLG  493 (708)
Q Consensus       430 ~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~  493 (708)
                      ...|+++.|...+.......-   .+  .......+...+...|++++|...+++...       +    ....+..+..
T Consensus       502 ~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~  581 (903)
T PRK04841        502 HCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQ  581 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            778999999998887664211   11  123455667778899999999998876531       1    1223445666


Q ss_pred             HHHhcCChHHHHHHHHHHHHCC--CCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhhHC--CCCcChH--H--HHHHHH
Q 038516          494 GYSHYGMAEEAFMVFEVILEHG--LRPD--EITFLSLLSACSHSGLVERGKILWNQMKEH--SLIPGHK--H--YSCMVS  563 (708)
Q Consensus       494 ~~~~~g~~~~A~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~--~--~~~l~~  563 (708)
                      .+...|++++|...+++.....  ..+.  ...+..+.......|++++|...++.+...  .......  .  ......
T Consensus       582 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~  661 (903)
T PRK04841        582 LLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLI  661 (903)
T ss_pred             HHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHH
Confidence            7778899999999999886531  1222  223444555778899999999999888553  1111111  0  011224


Q ss_pred             HHHhcCCHHHHHHHHHhCCCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC------CCcchHHHHHHHH
Q 038516          564 LLSRAGLLDEAENLIAESPYSE-IRI----ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP------EDGTTHILLSNLY  632 (708)
Q Consensus       564 ~~~~~g~~~~A~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~  632 (708)
                      .+...|+.+.|..++....... ...    ..+..+..++...|+.++|...++++++...      ....++..++.+|
T Consensus       662 ~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~  741 (903)
T PRK04841        662 YWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLY  741 (903)
T ss_pred             HHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence            4556899999999987763221 111    1234566677889999999999999987532      2234577889999


Q ss_pred             HhcCCchHHHHHHHHHhcCC
Q 038516          633 AATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       633 ~~~g~~~eA~~~~~~~~~~~  652 (708)
                      ...|+.++|...+.++.+..
T Consensus       742 ~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        742 WQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHh
Confidence            99999999999999887643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.61  E-value=2.6e-06  Score=86.90  Aligned_cols=190  Identities=16%  Similarity=0.189  Sum_probs=151.0

Q ss_pred             CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516          449 GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS  528 (708)
Q Consensus       449 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  528 (708)
                      +.+|-...-..+...+.+.|-..+|..+|+++     ..|.-.|.+|+..|+..+|..+..+..+.  +||..-|..+..
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence            45566666677888888999999999999764     56777888899999999999998888873  788888888888


Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMV  607 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a  607 (708)
                      ..-..--+++|+++.+.....       .-..+.....+.++++++.+.++.. ...+....+|-.++.+..+.++.+.|
T Consensus       466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a  538 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA  538 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence            877777788888887765432       1122334445678899999888776 44434677888888888889999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          608 IQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       608 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      ...|.+.+.++|++...|+++..+|.+.|+..+|...++++.+.+
T Consensus       539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn  583 (777)
T KOG1128|consen  539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN  583 (777)
T ss_pred             HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC
Confidence            999999999999999999999999999999999999998887765

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.61  E-value=6.4e-06  Score=89.80  Aligned_cols=201  Identities=16%  Similarity=0.123  Sum_probs=167.8

Q ss_pred             CCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 038516          451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--------PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT  522 (708)
Q Consensus       451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  522 (708)
                      +.+...|-..|......++.++|++++++.++        .-...|.++++.-...|.-+...++|+++.+.  ---...
T Consensus      1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred             CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence            34456667778888889999999999988752        23567999998888889889999999999984  222455


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC---CHHHHHHHHHHHH
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI---RIELWRTLLSTCV  599 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~  599 (708)
                      |..|...|.+.+.+++|.++|+.|.+. +.-....|..+++.+.+..+-++|..+++++..--|   ...+..-.+..-.
T Consensus      1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence            889999999999999999999999986 335677899999999999999999999988722113   3556667777788


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCc
Q 038516          600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLG  654 (708)
Q Consensus       600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  654 (708)
                      +.||.+++..+++..+...|.....|..+++.-.++|+.+.++.+|+++...++.
T Consensus      1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCC
Confidence            8999999999999999999999999999999999999999999999999887653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.61  E-value=9.8e-05  Score=75.07  Aligned_cols=190  Identities=14%  Similarity=0.067  Sum_probs=101.6

Q ss_pred             HHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CCh--HHHHHHHHHHHhcCC
Q 038516          428 ACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----PDL--KCWNALLGGYSHYGM  500 (708)
Q Consensus       428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~--~~~~~li~~~~~~g~  500 (708)
                      .+...|++++|...++...+.. +.+...+..+...+...|++++|...+++..+     ++.  ..|..+...+...|+
T Consensus       123 ~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~  201 (355)
T cd05804         123 GLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGD  201 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCC
Confidence            3344455555555555444433 23344555666777777777777777776642     222  245567777888888


Q ss_pred             hHHHHHHHHHHHHCCC-CCChHHH-H--HHHHHHhccCcHHHHHHH--HHHhhHCCCC--cChHHHHHHHHHHHhcCCHH
Q 038516          501 AEEAFMVFEVILEHGL-RPDEITF-L--SLLSACSHSGLVERGKIL--WNQMKEHSLI--PGHKHYSCMVSLLSRAGLLD  572 (708)
Q Consensus       501 ~~~A~~~~~~m~~~g~-~p~~~~~-~--~ll~~~~~~~~~~~a~~~--~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~  572 (708)
                      +++|..+++++..... .+..... +  .++.-+...|....+.++  +.........  .........+.++...|+.+
T Consensus       202 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  281 (355)
T cd05804         202 YEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKD  281 (355)
T ss_pred             HHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHH
Confidence            8888888888764321 1111111 1  222333333332222222  1111110101  11112224567778888999


Q ss_pred             HHHHHHHhCCC--C-----CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516          573 EAENLIAESPY--S-----EI---RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD  618 (708)
Q Consensus       573 ~A~~~~~~~~~--~-----~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  618 (708)
                      +|...++.+..  .     ..   ...+......++...|+.+.|.+.+..++.+-
T Consensus       282 ~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         282 ALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             HHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99988877611  1     00   11222223344667999999999999888653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.60  E-value=2.6e-05  Score=79.87  Aligned_cols=232  Identities=13%  Similarity=0.092  Sum_probs=183.8

Q ss_pred             CCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHH
Q 038516          349 YDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSA  428 (708)
Q Consensus       349 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~  428 (708)
                      ++|--..-..+...+.+.|-...|..+|+++.     .|...|.+|+..|+..+|..+..+-.+  -+||+.-|..+.+.
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erle-----mw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv  466 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERLE-----MWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV  466 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhHH-----HHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence            34555556678888999999999999998765     477789999999999999999888777  48899999999999


Q ss_pred             HhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHH
Q 038516          429 CADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAF  505 (708)
Q Consensus       429 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~  505 (708)
                      ..+..-+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+   --..+|-.+..+..+.+++..|.
T Consensus       467 ~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av  539 (777)
T KOG1128|consen  467 LHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAV  539 (777)
T ss_pred             ccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHH
Confidence            98888899999998765432       112333334457899999999987643   35678999999999999999999


Q ss_pred             HHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 038516          506 MVFEVILEHGLRPDE-ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES---  581 (708)
Q Consensus       506 ~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---  581 (708)
                      +.|.....  +.||. ..|+.+-.+|.+.++-.+|...+.+..+.. .-+...|...+-.....|.+++|.+.++++   
T Consensus       540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            99999998  57864 669999999999999999999999999876 344556777778889999999999999887   


Q ss_pred             CCCCCCHHHHHHHHHH
Q 038516          582 PYSEIRIELWRTLLST  597 (708)
Q Consensus       582 ~~~~~~~~~~~~l~~~  597 (708)
                      +....+..+...+...
T Consensus       617 ~~~~~d~~vl~~iv~~  632 (777)
T KOG1128|consen  617 RKKYKDDEVLLIIVRT  632 (777)
T ss_pred             hhhcccchhhHHHHHH
Confidence            3222344444444433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.60  E-value=5.8e-06  Score=74.25  Aligned_cols=156  Identities=10%  Similarity=0.027  Sum_probs=119.7

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc
Q 038516          489 NALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA  568 (708)
Q Consensus       489 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  568 (708)
                      ..+-..+...|+-+....+..+.... ..-|......+.......|++..|...+.+... .-++|...|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~-l~p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR-LAPTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc-cCCCChhhhhHHHHHHHHc
Confidence            45556677778877777777775543 122344455577778888888888888888876 4455688888888888888


Q ss_pred             CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516          569 GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       569 g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~  646 (708)
                      |++++|..-|.++ ...+.++.+.+.++..+.-.||.+.|+.++..+....+.+..+...|+.+....|++++|..+..
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~  226 (257)
T COG5010         148 GRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV  226 (257)
T ss_pred             cChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence            8888888887776 34435677888888888888999999998888888888888888888888888999988887765

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.59  E-value=1.3e-05  Score=78.34  Aligned_cols=141  Identities=15%  Similarity=0.124  Sum_probs=111.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH-HHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhc
Q 038516          491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLL-SACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRA  568 (708)
Q Consensus       491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~  568 (708)
                      ....+...|++++|+..++.++..  .||...|..+. ..+...++..+|.+.++++..  ..|+ ....-.+..+|.+.
T Consensus       312 ~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~  387 (484)
T COG4783         312 RALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhc
Confidence            334455678999999999998885  67666655544 488899999999999999987  5566 45556678999999


Q ss_pred             CCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516          569 GLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       569 g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~  647 (708)
                      |++.+|...+++.. ..+.++..|..|..+|...|+..++....                 +..|.-.|+|++|......
T Consensus       388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~~~l~~  450 (484)
T COG4783         388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAIIFLMR  450 (484)
T ss_pred             CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHHHHHHH
Confidence            99999999998883 34357889999999999999988876654                 4467778999999999888


Q ss_pred             HhcCC
Q 038516          648 MKGSM  652 (708)
Q Consensus       648 ~~~~~  652 (708)
                      .+++.
T Consensus       451 A~~~~  455 (484)
T COG4783         451 ASQQV  455 (484)
T ss_pred             HHHhc
Confidence            87753

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.59  E-value=1.4e-06  Score=74.24  Aligned_cols=107  Identities=19%  Similarity=0.181  Sum_probs=85.2

Q ss_pred             HHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          543 WNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       543 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      ++.+..  ..|+ ......++..+...|++++|.+.++.+ ...+.+...|..+...+...|+++.|...++++++.+|+
T Consensus         6 ~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         6 LKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             HHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            444443  3443 345666778888888999998888887 334346788888888888899999999999999999999


Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          621 DGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       621 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++..+..++.+|...|++++|...++...+.
T Consensus        84 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  114 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEPESALKALDLAIEI  114 (135)
T ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999887764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.58  E-value=0.00019  Score=66.75  Aligned_cols=324  Identities=12%  Similarity=0.059  Sum_probs=184.1

Q ss_pred             HHHhcccCCChHHHHHHHhccCCCChhHHHHHH---HHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHH-HHHHHcCCC
Q 038516          257 LLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMI---AGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAA-IISATSALP  332 (708)
Q Consensus       257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~-ll~~~~~~~  332 (708)
                      +-+.+...|++.+|+.-|....+.|+..|.++.   ..|...|+..-|+.-+.++.+   .+||-..-.. --..+.+.|
T Consensus        44 lGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle---lKpDF~~ARiQRg~vllK~G  120 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE---LKPDFMAARIQRGVVLLKQG  120 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh---cCccHHHHHHHhchhhhhcc
Confidence            444455567777777777777776666666654   357777777777777777764   4666432211 112345566


Q ss_pred             CccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhH
Q 038516          333 ASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCR  412 (708)
Q Consensus       333 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~  412 (708)
                      .++.|..-|+.++...  |+..   ....++.+.--.++-+.+            ...+..+.-.|+...|++....+++
T Consensus       121 ele~A~~DF~~vl~~~--~s~~---~~~eaqskl~~~~e~~~l------------~~ql~s~~~~GD~~~ai~~i~~llE  183 (504)
T KOG0624|consen  121 ELEQAEADFDQVLQHE--PSNG---LVLEAQSKLALIQEHWVL------------VQQLKSASGSGDCQNAIEMITHLLE  183 (504)
T ss_pred             cHHHHHHHHHHHHhcC--CCcc---hhHHHHHHHHhHHHHHHH------------HHHHHHHhcCCchhhHHHHHHHHHh
Confidence            6666666666665543  1110   011111111111111111            1223345567888888888888776


Q ss_pred             CCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CChHHHHH
Q 038516          413 EGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PDLKCWNA  490 (708)
Q Consensus       413 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~  490 (708)
                      -. +-|...+..-..+|...|.+..|..-++...+..- .+...+--+-..+...|+.+.++....+.++  ||-...  
T Consensus       184 i~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~C--  259 (504)
T KOG0624|consen  184 IQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKLC--  259 (504)
T ss_pred             cC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhhH--
Confidence            42 33444555556667778888888776666655442 3444444566777888999999888888764  443211  


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-----hHHHHHHHHHH
Q 038516          491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-----HKHYSCMVSLL  565 (708)
Q Consensus       491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~  565 (708)
                          |..-....+..+.++.|.+                ....++|.++.+..+...+.  .|.     ...+..+-.++
T Consensus       260 ----f~~YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~  317 (504)
T KOG0624|consen  260 ----FPFYKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCY  317 (504)
T ss_pred             ----HHHHHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecc
Confidence                1111122223333333332                12344555555555555543  222     22344455666


Q ss_pred             HhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516          566 SRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       566 ~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  626 (708)
                      ...|++-+|++...+.. ..+.+..++..-..+|.....++.|+.-|+++.+.+|++..+..
T Consensus       318 ~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re  379 (504)
T KOG0624|consen  318 REDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE  379 (504)
T ss_pred             cccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            67777777777776663 33234667777777777777788888888888888887765433

>PLN02789 farnesyltranstransferase

Probab=98.58  E-value=9.3e-06  Score=79.05  Aligned_cols=183  Identities=11%  Similarity=0.067  Sum_probs=115.6

Q ss_pred             hHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc--H
Q 038516          464 YAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYG-MAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGL--V  536 (708)
Q Consensus       464 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~--~  536 (708)
                      +...++.++|+.+.++++.   .+..+|+.....+...| ++++++..++++.+.  .| +...|+.....+.+.|+  .
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCchhh
Confidence            3345566677777766642   23445665555566666 567788888777774  33 33445544444444454  2


Q ss_pred             HHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc---CC----HHHH
Q 038516          537 ERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK---RN----SRMV  607 (708)
Q Consensus       537 ~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~---~~----~~~a  607 (708)
                      +++..+++++.+  ..| +..+|+....++.+.|++++|++.++++ ...+.+...|+.....+...   |.    .+.+
T Consensus       125 ~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e  202 (320)
T PLN02789        125 NKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSE  202 (320)
T ss_pred             HHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHH
Confidence            566777777765  334 4566777777777778888888887777 22324566677666655443   22    2456


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHhc
Q 038516          608 IQAAEQVLRLDPEDGTTHILLSNLYAA----TGRWDCVAKMRRKMKG  650 (708)
Q Consensus       608 ~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~  650 (708)
                      ..+..+++.++|+|.++|..++.++..    .++..+|.+++....+
T Consensus       203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~  249 (320)
T PLN02789        203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS  249 (320)
T ss_pred             HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence            777778888888888888888888877    3455667777766544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.56  E-value=1e-05  Score=86.92  Aligned_cols=139  Identities=9%  Similarity=-0.017  Sum_probs=94.5

Q ss_pred             CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHH
Q 038516          483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSC  560 (708)
Q Consensus       483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~  560 (708)
                      .++..+..|.....+.|++++|..+++...+  +.||.. .+..+...+.+.+++++|...+++...  ..|+ ......
T Consensus        84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~  159 (694)
T PRK15179         84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL  159 (694)
T ss_pred             ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence            3466677777777777777777777777777  466543 355566677777777777777777776  3443 555666


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516          561 MVSLLSRAGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTH  625 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  625 (708)
                      +..++...|++++|..+|+++....| +...|.++..++...|+.+.|...|+++++...+....|
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~  225 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKL  225 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHH
Confidence            67777777777777777777743323 366777777777777777777777777777655544433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.56  E-value=5.1e-06  Score=74.57  Aligned_cols=135  Identities=14%  Similarity=0.100  Sum_probs=112.6

Q ss_pred             CCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHH
Q 038516          517 RPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLL  595 (708)
Q Consensus       517 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~  595 (708)
                      .|+......+-..+...|+-+....+...... ....+......++....+.|++.+|...++++ ...++|...|+.+.
T Consensus        63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~-~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lg  141 (257)
T COG5010          63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI-AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLG  141 (257)
T ss_pred             CcchHHHHHHHHHHHhcccccchHHHHhhhhc-cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHH
Confidence            55433335555677778888888777776543 23335566777999999999999999999998 45558999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          596 STCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       596 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      .+|.+.|+.+.|...|.+++++.|+++.+...|+-.|.-.|+++.|..++......+
T Consensus       142 aaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~  198 (257)
T COG5010         142 AALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP  198 (257)
T ss_pred             HHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999999886543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.53  E-value=1.2e-05  Score=72.67  Aligned_cols=155  Identities=12%  Similarity=0.152  Sum_probs=115.1

Q ss_pred             HHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 038516          461 VDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGK  540 (708)
Q Consensus       461 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  540 (708)
                      +..|...|+++......+.+..|.        ..+...++.+++...+++..+.. +.|...|..+...|...|++++|.
T Consensus        23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~   93 (198)
T PRK10370         23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL   93 (198)
T ss_pred             HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence            346777787777655544332221        01223567788888888888752 335667888888999999999999


Q ss_pred             HHHHHhhHCCCCc-ChHHHHHHHHHH-HhcCC--HHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038516          541 ILWNQMKEHSLIP-GHKHYSCMVSLL-SRAGL--LDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVL  615 (708)
Q Consensus       541 ~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  615 (708)
                      ..|++..+  +.| +...+..++.++ .+.|+  .++|.++++++. ..+.+...+..++..+...|++++|+..+++++
T Consensus        94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL  171 (198)
T PRK10370         94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL  171 (198)
T ss_pred             HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999987  445 467777888864 67777  599999999983 333467888888889999999999999999999


Q ss_pred             hcCCCCcchHH
Q 038516          616 RLDPEDGTTHI  626 (708)
Q Consensus       616 ~~~p~~~~~~~  626 (708)
                      ++.|.+..-+.
T Consensus       172 ~l~~~~~~r~~  182 (198)
T PRK10370        172 DLNSPRVNRTQ  182 (198)
T ss_pred             hhCCCCccHHH
Confidence            99988776443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.52  E-value=6.5e-06  Score=77.99  Aligned_cols=184  Identities=14%  Similarity=0.049  Sum_probs=128.9

Q ss_pred             cCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCC-hH---HH
Q 038516          417 CDNFALSGALSACADLAILKQGEMIHSQAEKTGHG-V-EMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPD-LK---CW  488 (708)
Q Consensus       417 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~-~~---~~  488 (708)
                      .....+......+...|+++.|...++.+...... | ....+..+..++.+.|++++|...++++.  .|+ ..   ++
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            34556677777888999999999999998775421 1 12466778889999999999999999985  232 22   45


Q ss_pred             HHHHHHHHhc--------CChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHH
Q 038516          489 NALLGGYSHY--------GMAEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYS  559 (708)
Q Consensus       489 ~~li~~~~~~--------g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~  559 (708)
                      ..+..++...        |++++|.+.|+++...  .|+... ...+.....    ....      .        .....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~--------~~~~~  170 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------L--------AGKEL  170 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------H--------HHHHH
Confidence            5566666654        7899999999999985  565432 222211100    0000      0        01122


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          560 CMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       560 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      .+...|.+.|++++|...++++    |..+.....+..++.++...|+.++|...++.+....|+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~~  235 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYPD  235 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4667889999999999998887    333234678889999999999999999988887766553

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.52  E-value=3.9e-05  Score=74.76  Aligned_cols=198  Identities=13%  Similarity=0.038  Sum_probs=132.8

Q ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcC-CHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCh--HHHHHH
Q 038516          434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG-DLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMA--EEAFMV  507 (708)
Q Consensus       434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~--~~A~~~  507 (708)
                      ..++|..+...+.+.+ +-+..+++.-..++...| .+++++..++.+.   +.+..+|+.....+.+.|+.  ++++.+
T Consensus        52 ~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~  130 (320)
T PLN02789         52 RSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEF  130 (320)
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHH
Confidence            3444444444444432 122233333334444555 5678888887764   34556677665556666653  677888


Q ss_pred             HHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc---CCH----HHHHHHHH
Q 038516          508 FEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA---GLL----DEAENLIA  579 (708)
Q Consensus       508 ~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~  579 (708)
                      ++++++.  .| |...|.....++...|+++++++.++++++.+. -+...|+....++.+.   |.+    +++.++..
T Consensus       131 ~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~  207 (320)
T PLN02789        131 TRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTI  207 (320)
T ss_pred             HHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccccccccHHHHHHHHH
Confidence            8888875  44 567788877888888899999999999987432 2355566665555544   222    45677765


Q ss_pred             hC-CCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516          580 ES-PYSEIRIELWRTLLSTCVAK----RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       580 ~~-~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  635 (708)
                      ++ ...|.+...|..+.+.+...    ++..+|...+.++++.+|+++.++..|+++|.+.
T Consensus       208 ~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~  268 (320)
T PLN02789        208 DAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEG  268 (320)
T ss_pred             HHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhh
Confidence            54 44545778899998888773    4456798999999999999999999999999874

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.50  E-value=0.00011  Score=72.06  Aligned_cols=178  Identities=16%  Similarity=0.065  Sum_probs=129.0

Q ss_pred             CCHHHHHHHHhhCC------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 038516          468 GDLRAAESIFSQVL------HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKI  541 (708)
Q Consensus       468 g~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  541 (708)
                      .++.++...-+.++      .|+...+...+.+......-..+..++-+-.+.+ . ...-|..-+ .+...|++++|+.
T Consensus       251 ~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-~-~aa~YG~A~-~~~~~~~~d~A~~  327 (484)
T COG4783         251 ERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKYEALPNQQAADLLAKRSKRG-G-LAAQYGRAL-QTYLAGQYDEALK  327 (484)
T ss_pred             hHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHhccccccchHHHHHHHhCcc-c-hHHHHHHHH-HHHHhcccchHHH
Confidence            35566666666664      3555666666665444333333333332222211 1 112233322 4556789999999


Q ss_pred             HHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516          542 LWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       542 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  619 (708)
                      .++.++.  -.|+ +.......+.+.+.++.++|.+.++++....|+ ...+..+..++.+.|+.++|+..+++...-+|
T Consensus       328 ~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p  405 (484)
T COG4783         328 LLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDP  405 (484)
T ss_pred             HHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCC
Confidence            9999887  3454 556667789999999999999999998444455 77888899999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          620 EDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       620 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      +++..|..|+.+|..+|+..+|.....+...
T Consensus       406 ~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         406 EDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             CCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            9999999999999999999999988776644

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.46  E-value=4.3e-05  Score=82.29  Aligned_cols=130  Identities=11%  Similarity=0.082  Sum_probs=107.0

Q ss_pred             CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HH
Q 038516          449 GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT-FL  524 (708)
Q Consensus       449 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~  524 (708)
                      ....+...+-.|.....+.|.+++|..+++...  .| +...+..++..+.+.+++++|+..+++..+.  .|+..+ ..
T Consensus        81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~  158 (694)
T PRK15179         81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREIL  158 (694)
T ss_pred             hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHH
Confidence            345567888888999999999999999999885  34 5667778889999999999999999999985  676555 55


Q ss_pred             HHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          525 SLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       525 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      .+..++.+.|++++|..+|+++... ..-+...+..+..++...|+.++|...|+++
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~-~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQ-HPEFENGYVGWAQSLTRRGALWRARDVLQAG  214 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5556888999999999999999872 2233677888899999999999999999887

>PF12854 PPR_1: PPR repeat

Probab=98.44  E-value=2.4e-07  Score=55.84  Aligned_cols=33  Identities=21%  Similarity=0.418  Sum_probs=24.4

Q ss_pred             CCCCchhHHhHHHHHhHhCCChhHHHHHhccCC
Q 038516          145 GSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIG  177 (708)
Q Consensus       145 g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~  177 (708)
                      |+.||..+|+.||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            567777777777777777777777777777763

>PF12854 PPR_1: PPR repeat

Probab=98.42  E-value=2.8e-07  Score=55.52  Aligned_cols=33  Identities=24%  Similarity=0.483  Sum_probs=29.1

Q ss_pred             cCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCC
Q 038516           39 NHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIP   75 (708)
Q Consensus        39 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~   75 (708)
                      |+.    ||..+||.||++|++.|++++|.++|++|+
T Consensus         2 G~~----Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCE----PDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCC----CcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            566    899999999999999999999999999885

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.41  E-value=2.4e-05  Score=77.98  Aligned_cols=214  Identities=15%  Similarity=0.123  Sum_probs=126.0

Q ss_pred             cCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHH
Q 038516          329 SALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIK  405 (708)
Q Consensus       329 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~  405 (708)
                      .+.|++..|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+-   |..+.-.|.-.|...|.-..|+.
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            34556666666666666554 556677777777777777777777777766654   33445556666777777777777


Q ss_pred             HHHHHhHCCCc-----c---CHHHHHHHHHHHhCcccHHHHHHHHH-HHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHH
Q 038516          406 LFCKMCREGLK-----C---DNFALSGALSACADLAILKQGEMIHS-QAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESI  476 (708)
Q Consensus       406 ~~~~m~~~g~~-----p---~~~t~~~ll~~~~~~~~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  476 (708)
                      .|+..+....+     +   +..+-..  ........+....++|- .....+..+|+.+...|.-.|--.|++++|...
T Consensus       375 ~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDc  452 (579)
T KOG1125|consen  375 MLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDC  452 (579)
T ss_pred             HHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHH
Confidence            77776543210     0   0000000  01111222233333333 333444446667777777777777777777777


Q ss_pred             HhhCC--C-CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhh
Q 038516          477 FSQVL--H-PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWNQMK  547 (708)
Q Consensus       477 ~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~  547 (708)
                      |+..+  + .|...||-|...++...+.++|+.-|+++++  ++|+.+ ....|.-+|...|.+++|.+.|-..+
T Consensus       453 f~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL  525 (579)
T KOG1125|consen  453 FEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL  525 (579)
T ss_pred             HHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence            77664  2 3566777777777777777777777777777  466643 23334446667777777766665544

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.38  E-value=0.00018  Score=64.72  Aligned_cols=115  Identities=14%  Similarity=0.121  Sum_probs=52.9

Q ss_pred             HHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcH
Q 038516          461 VDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH----SGLV  536 (708)
Q Consensus       461 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~  536 (708)
                      ...|+..|++++|.+.......-+...  .=...+.+..+.+-|.+.+++|.+-   -+..|.+.|..++.+    .+.+
T Consensus       115 a~i~~~~~~~deAl~~~~~~~~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~  189 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGENLEAAA--LNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI  189 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence            344556666666666655522111111  1122334444555566666666551   134444444444332    2334


Q ss_pred             HHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          537 ERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       537 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      .+|.-+|++|-+ +..|+..+.+..+.+....|++++|..+++.+
T Consensus       190 qdAfyifeE~s~-k~~~T~~llnG~Av~~l~~~~~eeAe~lL~ea  233 (299)
T KOG3081|consen  190 QDAFYIFEELSE-KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEA  233 (299)
T ss_pred             hhHHHHHHHHhc-ccCCChHHHccHHHHHHHhcCHHHHHHHHHHH
Confidence            455555555443 23444444444444444455555555554444

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.38  E-value=1.3e-05  Score=72.82  Aligned_cols=197  Identities=11%  Similarity=0.045  Sum_probs=154.6

Q ss_pred             HHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhc
Q 038516          457 CGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSL-LSACSH  532 (708)
Q Consensus       457 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~  532 (708)
                      +++.+..+.+..++++|++++..-.+   .+....+.|..+|....++..|...++++..  ..|...-|... ...+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK   90 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence            34555556677888888888876542   3666778888889999999999999999988  47776666543 347778


Q ss_pred             cCcHHHHHHHHHHhhHCCCCcChH--HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038516          533 SGLVERGKILWNQMKEHSLIPGHK--HYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQA  610 (708)
Q Consensus       533 ~~~~~~a~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  610 (708)
                      .+.+.+|+.+...|.+.   |...  +.-.=.......+++.-+..++++.|.. .+.......+....+.|+++.|++-
T Consensus        91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvqk  166 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQK  166 (459)
T ss_pred             hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHHH
Confidence            89999999998888652   2211  1111122344678889999999999866 5777777777777889999999999


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCce
Q 038516          611 AEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGL  659 (708)
Q Consensus       611 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~  659 (708)
                      |+.+++...-++..-..++-++.+.|+++.|.+...++..+|++..|..
T Consensus       167 FqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPEl  215 (459)
T KOG4340|consen  167 FQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPEL  215 (459)
T ss_pred             HHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc
Confidence            9999999988888888999999999999999999999999999988854

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.36  E-value=1.7e-05  Score=75.61  Aligned_cols=166  Identities=17%  Similarity=0.094  Sum_probs=113.0

Q ss_pred             HhhHhcCCHHHHHHHHhhCCCCChH-HHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 038516          462 DMYAKNGDLRAAESIFSQVLHPDLK-CWNALLG--GYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVER  538 (708)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  538 (708)
                      .++.-.|++++|.+.--.+.+-|.. .+..+++  ++...++.+.|...|++.+.  +.|+...-...-          .
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~----------~  244 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSAS----------M  244 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHh----------h
Confidence            4455667777777766555543322 2222222  34456777888888888777  456644322211          1


Q ss_pred             HHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038516          539 GKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSE-----IRIELWRTLLSTCVAKRNSRMVIQAAEQ  613 (708)
Q Consensus       539 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~  613 (708)
                      -.+.++.+...            ++-..+.|++.+|.+.|.+.....     ++..+|........+.|+.++|+.-.+.
T Consensus       245 ~~k~le~~k~~------------gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~  312 (486)
T KOG0550|consen  245 MPKKLEVKKER------------GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNE  312 (486)
T ss_pred             hHHHHHHHHhh------------hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhh
Confidence            11222333332            255678999999999998872222     3455566666677789999999999999


Q ss_pred             HHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          614 VLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       614 ~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++.++|.-..+|...++++...++|++|.+.+++..+.
T Consensus       313 Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  313 ALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL  350 (486)
T ss_pred             hhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999988664

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.36  E-value=3.4e-06  Score=77.21  Aligned_cols=92  Identities=16%  Similarity=0.134  Sum_probs=44.1

Q ss_pred             HhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516          530 CSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMV  607 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a  607 (708)
                      +.+.+++++|+..|.+.++  +.|+ ...|..=..+|.+.|.++.|.+-.+.+. ..+.....|..|..+|...|++++|
T Consensus        91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            3444555555555555554  3443 3333334445555555555555444442 2211234455555555555555555


Q ss_pred             HHHHHHHHhcCCCCcc
Q 038516          608 IQAAEQVLRLDPEDGT  623 (708)
Q Consensus       608 ~~~~~~~~~~~p~~~~  623 (708)
                      ++.|+++++++|++..
T Consensus       169 ~~aykKaLeldP~Ne~  184 (304)
T KOG0553|consen  169 IEAYKKALELDPDNES  184 (304)
T ss_pred             HHHHHhhhccCCCcHH
Confidence            5555555555555544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.35  E-value=9.2e-06  Score=80.57  Aligned_cols=123  Identities=16%  Similarity=0.156  Sum_probs=103.8

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhc
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAK  601 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~  601 (708)
                      ...|+..+...++++.|..+++++.+..  |+.  ...++..+...++-.+|.+++++... .+.+...+......|...
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            4456667777889999999999998743  553  44588888888999999999988733 324677788888889999


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          602 RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       602 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      ++++.|..++++++++.|++...|..|+.+|...|++++|+-.++.+.
T Consensus       248 ~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  248 KKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             CCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            999999999999999999999999999999999999999998888763

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.33  E-value=0.0059  Score=64.77  Aligned_cols=65  Identities=15%  Similarity=0.171  Sum_probs=53.7

Q ss_pred             HHHHHHHHHhcCCH---HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCcc
Q 038516          591 WRTLLSTCVAKRNS---RMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGK  655 (708)
Q Consensus       591 ~~~l~~~~~~~~~~---~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~  655 (708)
                      .+.++..|++.+|.   -+|+-+++..+..+|.|...-..|..+|.-.|-+..|.++++.+--+++..
T Consensus       439 v~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~  506 (932)
T KOG2053|consen  439 VNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQT  506 (932)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhh
Confidence            45666778887764   478888899999999999999999999999999999999999886555543

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.31  E-value=0.00037  Score=62.84  Aligned_cols=150  Identities=13%  Similarity=-0.016  Sum_probs=116.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH----h
Q 038516          492 LGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS----R  567 (708)
Q Consensus       492 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~----~  567 (708)
                      ...|+..|++++|++......      +......=...+.+..+++-|.+.+++|.+-   .+..+.+.|+.++.    -
T Consensus       115 a~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~g  185 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATG  185 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhcc
Confidence            456889999999999887722      2222333334566788899999999999862   23455665655554    4


Q ss_pred             cCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH-HHH
Q 038516          568 AGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVA-KMR  645 (708)
Q Consensus       568 ~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~-~~~  645 (708)
                      .++..+|.-+|+++.. .+|++.+.+..+.++...|++++|+.+++.++..+|+++.++..+.-+-...|+-.++. +.+
T Consensus       186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            5579999999999965 55889999999999999999999999999999999999999999988888889887764 456


Q ss_pred             HHHhc
Q 038516          646 RKMKG  650 (708)
Q Consensus       646 ~~~~~  650 (708)
                      .+++.
T Consensus       266 ~QLk~  270 (299)
T KOG3081|consen  266 SQLKL  270 (299)
T ss_pred             HHHHh
Confidence            66654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.29  E-value=1.3e-05  Score=80.20  Aligned_cols=90  Identities=11%  Similarity=0.049  Sum_probs=65.7

Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038516          562 VSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC  640 (708)
Q Consensus       562 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e  640 (708)
                      +..+...|++++|++.++++ ...+.+...|..+..++...|++++|+..++++++++|+++.+|..+|.+|...|++++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence            45566677777777777776 33323566677777777777888888888888888888877778788888888888888


Q ss_pred             HHHHHHHHhcC
Q 038516          641 VAKMRRKMKGS  651 (708)
Q Consensus       641 A~~~~~~~~~~  651 (708)
                      |+..++++.+.
T Consensus        89 A~~~~~~al~l   99 (356)
T PLN03088         89 AKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHh
Confidence            88877776653

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.27  E-value=0.00017  Score=79.21  Aligned_cols=240  Identities=14%  Similarity=0.126  Sum_probs=184.5

Q ss_pred             hhHHHHHHHHHHhCCCCCC-cchHHHHHHHHhccCChhHHHHHHHHHHHh-CCC---CChhhHHHHHHhcccCCChHHHH
Q 038516          197 MKEGLSLFGAMVGSGVNPT-QFSYSMLLNACSRMGNFVCGKVIHARVIIS-NTQ---VDLPLENALLDMYSKCSDTQTAF  271 (708)
Q Consensus       197 ~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~a~  271 (708)
                      ++.|.++.+..+.   .|| ...|..-|....+.++++.|+++.++++.. ++.   -...+|.++++.-...|.-+...
T Consensus      1441 pesaeDferlvrs---sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1441 PESAEDFERLVRS---SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred             CcCHHHHHHHHhc---CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence            3344454444443   454 455777888888999999999999998865 211   12357888888888889999999


Q ss_pred             HHHhccCC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCC
Q 038516          272 SVFTRIEN--PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGY  349 (708)
Q Consensus       272 ~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  349 (708)
                      ++|+++.+  .....|..|...|.+.+.+++|.++|+.|.++  ..-....|...+..+.+..+-+.|..++...++.-.
T Consensus      1518 kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK--F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lP 1595 (1710)
T KOG1070|consen 1518 KVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK--FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLP 1595 (1710)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH--hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcc
Confidence            99999987  33456889999999999999999999999997  446777888889999999999999999998877532


Q ss_pred             C-CchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHH--HHH
Q 038516          350 D-SSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNF--ALS  423 (708)
Q Consensus       350 ~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~--t~~  423 (708)
                      . -...+..-.+..-.+.|+.+.++.+|+.....   -...|+..|..-.++|+.+.+..+|++.+..++.|-..  .|.
T Consensus      1596 k~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffK 1675 (1710)
T KOG1070|consen 1596 KQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFK 1675 (1710)
T ss_pred             hhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHH
Confidence            2 24555666777788999999999999988753   56789999999999999999999999999998887653  445


Q ss_pred             HHHHHHhCcccHHHHHHH
Q 038516          424 GALSACADLAILKQGEMI  441 (708)
Q Consensus       424 ~ll~~~~~~~~~~~a~~~  441 (708)
                      ..|..-.+.|+-+.++.+
T Consensus      1676 kwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1676 KWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             HHHHHHHhcCchhhHHHH
Confidence            555544444554444443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.27  E-value=0.00017  Score=78.51  Aligned_cols=149  Identities=12%  Similarity=0.162  Sum_probs=88.5

Q ss_pred             hHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHh
Q 038516          455 SVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACS  531 (708)
Q Consensus       455 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  531 (708)
                      ..+..+..+|-+.|+.++|..++++++   ..|+.+.|.+...|... +.++|.+++.+.+..               +.
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i  180 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI  180 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence            355566667777777777777777664   24566667777777766 777777777766653               44


Q ss_pred             ccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038516          532 HSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQA  610 (708)
Q Consensus       532 ~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  610 (708)
                      ..+++..+.++|+++...  .|+ ...+..+.+.....            .... --...+..+...|...++++.+..+
T Consensus       181 ~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~------------~~~~-~~~~~~~~l~~~y~~~~~~~~~i~i  245 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGH------------REFT-RLVGLLEDLYEPYKALEDWDEVIYI  245 (906)
T ss_pred             hhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhh------------hccc-hhHHHHHHHHHHHhhhhhhhHHHHH
Confidence            455666666666666652  222 22221111111111            0111 2234455555666677778888888


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHh
Q 038516          611 AEQVLRLDPEDGTTHILLSNLYAA  634 (708)
Q Consensus       611 ~~~~~~~~p~~~~~~~~l~~~~~~  634 (708)
                      ++.+++.+|+|..+..-++..|..
T Consensus       246 LK~iL~~~~~n~~a~~~l~~~y~~  269 (906)
T PRK14720        246 LKKILEHDNKNNKAREELIRFYKE  269 (906)
T ss_pred             HHHHHhcCCcchhhHHHHHHHHHH
Confidence            888888888877777777776653

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=0.00014  Score=64.91  Aligned_cols=164  Identities=15%  Similarity=0.129  Sum_probs=79.0

Q ss_pred             HHHHHHhhHhcCCHHHHHHHHhhCCC--CChH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 038516          457 CGSLVDMYAKNGDLRAAESIFSQVLH--PDLK-CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS  533 (708)
Q Consensus       457 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  533 (708)
                      |..+.-+..-.|+.+-|...++.+..  |... .-..-...+-..|++++|+++++.+++.. +.|.+++.-=+...-..
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~  133 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQ  133 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHc
Confidence            33444444455666666655555421  2111 11111112334456666666666666543 22444444444444444


Q ss_pred             CcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcC---CHHHHHH
Q 038516          534 GLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKR---NSRMVIQ  609 (708)
Q Consensus       534 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~---~~~~a~~  609 (708)
                      |+.-+|++-+....+ .+..|.+.|.-+...|...|++++|.-.++++ ...|.++..+..+...+...|   +.+.|..
T Consensus       134 GK~l~aIk~ln~YL~-~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark  212 (289)
T KOG3060|consen  134 GKNLEAIKELNEYLD-KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK  212 (289)
T ss_pred             CCcHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            544455554444444 34445566666666666666666666666655 222223444444444433222   4555666


Q ss_pred             HHHHHHhcCCCCc
Q 038516          610 AAEQVLRLDPEDG  622 (708)
Q Consensus       610 ~~~~~~~~~p~~~  622 (708)
                      +|.+++++.|.+.
T Consensus       213 yy~~alkl~~~~~  225 (289)
T KOG3060|consen  213 YYERALKLNPKNL  225 (289)
T ss_pred             HHHHHHHhChHhH
Confidence            6666666666443

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.22  E-value=8.8e-05  Score=63.75  Aligned_cols=114  Identities=17%  Similarity=0.127  Sum_probs=52.7

Q ss_pred             cCChHHHHHHHHHHHHCCCCCCh----HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC--hHHHHHHHHHHHhcCCH
Q 038516          498 YGMAEEAFMVFEVILEHGLRPDE----ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG--HKHYSCMVSLLSRAGLL  571 (708)
Q Consensus       498 ~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~  571 (708)
                      .++...+...++.+...  .|+.    .....+...+...|++++|...|+........|.  ....-.|...+...|++
T Consensus        24 ~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~  101 (145)
T PF09976_consen   24 AGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY  101 (145)
T ss_pred             CCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            55666666666666654  2222    1122233345555666666666666555432221  11222345555555666


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038516          572 DEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQ  613 (708)
Q Consensus       572 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  613 (708)
                      ++|+..++..+..+..+..+...+..+...|+.++|...|++
T Consensus       102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen  102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            666655555433222333333333444444444444444443

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.22  E-value=4.2e-05  Score=65.11  Aligned_cols=115  Identities=10%  Similarity=0.057  Sum_probs=89.1

Q ss_pred             HHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038516          507 VFEVILEHGLRPDE-ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYS  584 (708)
Q Consensus       507 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  584 (708)
                      .++++..  ..|+. .....+...+...|++++|.+.++.+...+ +.+...+..++..+...|++++|...+++. ...
T Consensus         5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~   81 (135)
T TIGR02552         5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD   81 (135)
T ss_pred             hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            4555555  35543 445566667888899999999998887732 235677888889999999999999988887 334


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516          585 EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT  624 (708)
Q Consensus       585 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  624 (708)
                      +.+...+..+...+...|+.+.|...++++++++|++...
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~  121 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY  121 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence            3567788888888999999999999999999999988764

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=0.00066  Score=60.78  Aligned_cols=163  Identities=12%  Similarity=0.082  Sum_probs=108.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH-HHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH
Q 038516          488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS-ACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS  566 (708)
Q Consensus       488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  566 (708)
                      |..++-+....|+.+.|...++++... + |...-...+=. -+...|++++|+++++.+.+.+ +-|..++---+-..-
T Consensus        55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilk  131 (289)
T KOG3060|consen   55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILK  131 (289)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHH
Confidence            444555666777888888888887776 3 54433222222 3455678888888888887744 234555555555666


Q ss_pred             hcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC---CchHHH
Q 038516          567 RAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG---RWDCVA  642 (708)
Q Consensus       567 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~eA~  642 (708)
                      ..|+.-+|++-+..... -..|.+.|..+...|...|+++.|.-.+++++=++|-++..+..++++++..|   ++.-|+
T Consensus       132 a~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ar  211 (289)
T KOG3060|consen  132 AQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELAR  211 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            67776677766555411 11577888888888888888888888888888888888888888888877766   444566


Q ss_pred             HHHHHHhcCCC
Q 038516          643 KMRRKMKGSML  653 (708)
Q Consensus       643 ~~~~~~~~~~~  653 (708)
                      +++.+..+...
T Consensus       212 kyy~~alkl~~  222 (289)
T KOG3060|consen  212 KYYERALKLNP  222 (289)
T ss_pred             HHHHHHHHhCh
Confidence            66666655444

>PRK15331 chaperone protein SicA; Provisional

Probab=98.21  E-value=4.5e-05  Score=64.17  Aligned_cols=92  Identities=13%  Similarity=0.033  Sum_probs=81.2

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516          559 SCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR  637 (708)
Q Consensus       559 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  637 (708)
                      -..+.-+...|++++|..+|+-+ ...+-+...|..|..+|...+++++|...|..+.-++++|+.+..+.|.+|...|+
T Consensus        41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~  120 (165)
T PRK15331         41 YAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRK  120 (165)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCC
Confidence            34556677899999999999887 33335788899999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhc
Q 038516          638 WDCVAKMRRKMKG  650 (708)
Q Consensus       638 ~~eA~~~~~~~~~  650 (708)
                      .++|+..|.....
T Consensus       121 ~~~A~~~f~~a~~  133 (165)
T PRK15331        121 AAKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999997765

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.19  E-value=0.0094  Score=59.58  Aligned_cols=122  Identities=22%  Similarity=0.251  Sum_probs=59.5

Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHH
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVLH-----PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT-FLSLLSA  529 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~  529 (708)
                      +|..+++...+..-+..|+.+|.+..+     -++...++++.-||. ++..-|.++|+--+..  -+|... ....+.-
T Consensus       368 v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk--f~d~p~yv~~Yldf  444 (656)
T KOG1914|consen  368 VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK--FGDSPEYVLKYLDF  444 (656)
T ss_pred             ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh--cCCChHHHHHHHHH
Confidence            344445555555555555555555421     144445555554443 4555555555544442  223222 2334444


Q ss_pred             HhccCcHHHHHHHHHHhhHCCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038516          530 CSHSGLVERGKILWNQMKEHSLIPG--HKHYSCMVSLLSRAGLLDEAENLIAE  580 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~  580 (708)
                      +...++-..+..+|++....++.|+  ...|..+++-=..-|+++.+.++-++
T Consensus       445 L~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR  497 (656)
T KOG1914|consen  445 LSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKR  497 (656)
T ss_pred             HHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            4555555555555555555444433  34455555555555555555555444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.18  E-value=5e-05  Score=65.25  Aligned_cols=124  Identities=14%  Similarity=0.088  Sum_probs=91.8

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCC-CC-cChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCH----HHHHHHHH
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHS-LI-PGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRI----ELWRTLLS  596 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~  596 (708)
                      |..++..+ ..++...+...++.+.+.. -. ......-.+...+...|++++|...|+.+....|++    .....+..
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            44444444 4788888988899998752 11 123344456788999999999999999984443443    24555677


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      .+...|++++|+..++.. .-.+-.+..+..+|++|...|++++|+..+++.
T Consensus        94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            788899999999999763 334445667889999999999999999999864

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.18  E-value=3.6e-05  Score=63.85  Aligned_cols=95  Identities=13%  Similarity=-0.003  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAESPYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED---GTTHILLS  629 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~  629 (708)
                      ++..++..+.+.|++++|.+.++.+....|+    ...+..++.++...|+++.|...+++++...|++   +.++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3445666677777777777777666221122    3455556666777777777777777777777664   34567777


Q ss_pred             HHHHhcCCchHHHHHHHHHhcC
Q 038516          630 NLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       630 ~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      .++...|++++|.+.++++.+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHH
Confidence            7777777777777777777654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.16  E-value=4.7e-06  Score=61.03  Aligned_cols=64  Identities=19%  Similarity=0.244  Sum_probs=59.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC-CchHHHHHHHHHhc
Q 038516          587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG-RWDCVAKMRRKMKG  650 (708)
Q Consensus       587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~eA~~~~~~~~~  650 (708)
                      ++..|..++..+...|++++|+..++++++++|+++.+|..+|.+|...| ++++|++.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999 79999999998765

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.09  E-value=3.7e-05  Score=60.67  Aligned_cols=94  Identities=16%  Similarity=0.174  Sum_probs=78.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG  636 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  636 (708)
                      +..++..+...|++++|...++++. ..+.+...+..+...+...++.+.|...++++++..|.+...+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            4557778888999999999998873 332345677778888888999999999999999999999988999999999999


Q ss_pred             CchHHHHHHHHHhcC
Q 038516          637 RWDCVAKMRRKMKGS  651 (708)
Q Consensus       637 ~~~eA~~~~~~~~~~  651 (708)
                      ++++|...+....+.
T Consensus        83 ~~~~a~~~~~~~~~~   97 (100)
T cd00189          83 KYEEALEAYEKALEL   97 (100)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            999999999877653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.09  E-value=0.00012  Score=72.82  Aligned_cols=126  Identities=13%  Similarity=0.093  Sum_probs=104.8

Q ss_pred             hHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhcc
Q 038516          455 SVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHS  533 (708)
Q Consensus       455 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~  533 (708)
                      .....|+..+...++++.|+.+|+++.+.++.....+++.+...++-.+|++++++.+..  .| |...+..-...|.+.
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k  247 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSK  247 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhc
Confidence            344567777778899999999999998666666677888888889999999999999975  44 445555556678899


Q ss_pred             CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCC
Q 038516          534 GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYS  584 (708)
Q Consensus       534 ~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  584 (708)
                      ++++.|+++.+++.+  ..|+ ..+|..|+.+|...|++++|+..+..+|..
T Consensus       248 ~~~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  248 KKYELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             CCHHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            999999999999997  6675 679999999999999999999999999755

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.08  E-value=2e-05  Score=72.96  Aligned_cols=107  Identities=13%  Similarity=0.064  Sum_probs=91.8

Q ss_pred             cChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516          553 PGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA---KRNSRMVIQAAEQVLRLDPEDGTTHILL  628 (708)
Q Consensus       553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l  628 (708)
                      -|...|..|+..|.+.|++..|..-|..+ ...++++.++..+..++..   ..+..++..++++++.++|.+..+...|
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            35788999999999999999999999887 5555788888888887544   2367889999999999999999999999


Q ss_pred             HHHHHhcCCchHHHHHHHHHhcCCCccCCce
Q 038516          629 SNLYAATGRWDCVAKMRRKMKGSMLGKEPGL  659 (708)
Q Consensus       629 ~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~  659 (708)
                      +..++.+|++.+|...|+.|.+....-.|+.
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr  264 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDLLPADDPRR  264 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCCCCCchH
Confidence            9999999999999999999998876554443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.07  E-value=3.4e-05  Score=70.81  Aligned_cols=101  Identities=17%  Similarity=0.120  Sum_probs=83.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCC
Q 038516          493 GGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGL  570 (708)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  570 (708)
                      .-+.+.+++.+|+..|.++++  +.| |.+-|..-..+|++.|.++.|++-.+..+.  +.|. ...|..|..+|...|+
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCc
Confidence            457788999999999999999  566 566677778899999999999999988887  6676 6789999999999999


Q ss_pred             HHHHHHHHHhCCCCCCCHHHHHHHHHH
Q 038516          571 LDEAENLIAESPYSEIRIELWRTLLST  597 (708)
Q Consensus       571 ~~~A~~~~~~~~~~~~~~~~~~~l~~~  597 (708)
                      +++|.+.|+++....|+..+|..-+..
T Consensus       165 ~~~A~~aykKaLeldP~Ne~~K~nL~~  191 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNESYKSNLKI  191 (304)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence            999999999985555776665544433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.03  E-value=3.2e-06  Score=64.73  Aligned_cols=79  Identities=18%  Similarity=0.219  Sum_probs=54.2

Q ss_pred             cCCHHHHHHHHHhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 038516          568 AGLLDEAENLIAESPYSEI---RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKM  644 (708)
Q Consensus       568 ~g~~~~A~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~  644 (708)
                      .|++++|+.+++++....|   +...|-.++.++.+.|++++|..++++ .+.+|.+......+|.+|.+.|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4666777776666611112   344555567777777777777777777 667777777777778888888888888888


Q ss_pred             HHH
Q 038516          645 RRK  647 (708)
Q Consensus       645 ~~~  647 (708)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            765

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.02  E-value=1.2e-05  Score=57.99  Aligned_cols=58  Identities=22%  Similarity=0.284  Sum_probs=48.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++..+...|++++|+..++++++.+|+++.++..++.++..+|++++|...++++.+.
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4556778888999999999999999998888999999999999999999888887654

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.00  E-value=1.3e-05  Score=49.20  Aligned_cols=35  Identities=23%  Similarity=0.379  Sum_probs=30.3

Q ss_pred             ccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCc
Q 038516           80 VSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNG  115 (708)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~  115 (708)
                      .+||++|.+|++.|+ +++|.++|++|.+.|++||.
T Consensus         1 ~~~n~li~~~~~~~~-~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGR-VEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCC-HHHHHHHHHHHHHcCCCCCC
Confidence            378999999999998 99999999999998888873

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.99  E-value=1.1e-05  Score=49.58  Aligned_cols=35  Identities=34%  Similarity=0.643  Sum_probs=30.4

Q ss_pred             ccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCc
Q 038516          182 VAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQ  216 (708)
Q Consensus       182 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  216 (708)
                      .+||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~   35 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV   35 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence            37899999999999999999999999998888874

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.98  E-value=2e-05  Score=57.44  Aligned_cols=53  Identities=17%  Similarity=0.391  Sum_probs=47.2

Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          599 VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       599 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ...|++++|+..++++++.+|++..++..++.+|.+.|++++|.++++++...
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999877654

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.96  E-value=0.00011  Score=60.87  Aligned_cols=103  Identities=7%  Similarity=-0.037  Sum_probs=65.6

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCC--CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHH
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHS--LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI----RIELWRTLLS  596 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~  596 (708)
                      +..+...+...|++++|.+.|+.+.+..  .......+..++.++.+.|++++|...++++....|    ....+..++.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            3344445555666666666666665431  011123455567777777777777777776622112    2456777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516          597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTH  625 (708)
Q Consensus       597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  625 (708)
                      ++...|+.+.|...++++++..|++....
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  113 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYPGSSAAK  113 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCcCChhHH
Confidence            78888888888888888888888876543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=6.2e-05  Score=72.31  Aligned_cols=87  Identities=21%  Similarity=0.271  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCe
Q 038516          588 IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNN  667 (708)
Q Consensus       588 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~  667 (708)
                      ..++..+..++.+.+++..|+....++++++|+|.-++..-|.+|...|.++.|+..|+++.+.                
T Consensus       257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~----------------  320 (397)
T KOG0543|consen  257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL----------------  320 (397)
T ss_pred             HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh----------------
Confidence            3456777888889999999999999999999999999999999999999999999999999874                


Q ss_pred             EEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhh
Q 038516          668 VHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVT  700 (708)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  700 (708)
                                .|.+.+|..+|..+++++++.+.
T Consensus       321 ----------~P~Nka~~~el~~l~~k~~~~~~  343 (397)
T KOG0543|consen  321 ----------EPSNKAARAELIKLKQKIREYEE  343 (397)
T ss_pred             ----------CCCcHHHHHHHHHHHHHHHHHHH
Confidence                      68889999999999999988743

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.91  E-value=0.032  Score=55.94  Aligned_cols=74  Identities=11%  Similarity=0.059  Sum_probs=49.1

Q ss_pred             CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHHHHH
Q 038516          215 TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNSMIA  290 (708)
Q Consensus       215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~  290 (708)
                      |..+|..||+-+... ..+++++.+++++.. .+.....|...+..-.+..+++..+++|.+-..  -++..|...+.
T Consensus        19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~lYl~   94 (656)
T KOG1914|consen   19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKLYLS   94 (656)
T ss_pred             cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHHHHH
Confidence            667777777766555 777777777777654 344556677777777777777777777776543  45555555544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=97.91  E-value=0.005  Score=67.49  Aligned_cols=85  Identities=14%  Similarity=0.107  Sum_probs=57.2

Q ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 038516          421 ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGM  500 (708)
Q Consensus       421 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~  500 (708)
                      .+..+..+|.+.|+.+++..+++.+.+.. +.++.+.|.+...|... ++++|.+++.+.           +..|...++
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq  184 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ  184 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence            44455556666666666666666666655 55677777777777777 888888777553           334666677


Q ss_pred             hHHHHHHHHHHHHCCCCCCh
Q 038516          501 AEEAFMVFEVILEHGLRPDE  520 (708)
Q Consensus       501 ~~~A~~~~~~m~~~g~~p~~  520 (708)
                      +..+.++|.++...  .|+.
T Consensus       185 ~~~~~e~W~k~~~~--~~~d  202 (906)
T PRK14720        185 YVGIEEIWSKLVHY--NSDD  202 (906)
T ss_pred             chHHHHHHHHHHhc--Cccc
Confidence            78888888888774  4443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.90  E-value=2.3e-05  Score=47.69  Aligned_cols=33  Identities=30%  Similarity=0.611  Sum_probs=26.5

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP  518 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  518 (708)
                      .+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            477888888888888888888888888888776

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.90  E-value=2.3e-05  Score=47.72  Aligned_cols=33  Identities=30%  Similarity=0.574  Sum_probs=25.4

Q ss_pred             ccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCC
Q 038516           80 VSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRP  113 (708)
Q Consensus        80 ~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p  113 (708)
                      .+||.+|.+|++.|+ ++.|.++|+.|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~-~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGD-PDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCC
Confidence            467777777777777 777777777777777766

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.88  E-value=4.5e-05  Score=56.53  Aligned_cols=59  Identities=14%  Similarity=0.177  Sum_probs=52.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      ...+...++++.|...++++++++|+++..+..+|.+|...|++++|.+.+++..+.+.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            34677899999999999999999999999999999999999999999999998876543

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.84  E-value=0.00018  Score=63.69  Aligned_cols=94  Identities=11%  Similarity=-0.047  Sum_probs=74.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAESP-YS-EI--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN  630 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  630 (708)
                      ...+..++..+...|++++|...++++. .. .+  ...+|..+...+...|+.++|...+++++.++|.....+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            4556777788888899999999888872 11 11  23578888889999999999999999999999999998888888


Q ss_pred             HHH-------hcCCchHHHHHHHHH
Q 038516          631 LYA-------ATGRWDCVAKMRRKM  648 (708)
Q Consensus       631 ~~~-------~~g~~~eA~~~~~~~  648 (708)
                      +|.       ..|++++|...+++.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHH
Confidence            888       888888666655543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.81  E-value=6.5e-05  Score=54.07  Aligned_cols=62  Identities=21%  Similarity=0.244  Sum_probs=52.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516          561 MVSLLSRAGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG  622 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  622 (708)
                      ++..+...|++++|.+.++++....| +...|..++.++...|++++|...++++++.+|+++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            56778899999999999999833334 678899999999999999999999999999999875

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.81  E-value=0.00033  Score=70.11  Aligned_cols=105  Identities=14%  Similarity=0.082  Sum_probs=74.8

Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM  606 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~  606 (708)
                      .+...|++++|++.|+++++  ..| +...|..++.+|...|++++|+..++++ ...+.+...|..++.+|...|+++.
T Consensus        11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e   88 (356)
T PLN03088         11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT   88 (356)
T ss_pred             HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence            44556677777777777765  333 2455666777777788888888877777 3332456677777888888888888


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516          607 VIQAAEQVLRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  635 (708)
                      |+..++++++++|+++.+...+..+....
T Consensus        89 A~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         89 AKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            88888888888888888777776664444

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.80  E-value=0.00019  Score=63.78  Aligned_cols=96  Identities=15%  Similarity=0.093  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAESPY---SEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN  630 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  630 (708)
                      ...+..++..+...|++++|...++++..   .++ ....+..++..+...|+++.|...++++++..|++...+..++.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            33456666777777777777777776621   111 14567777888888899999999999999999988888888888


Q ss_pred             HHHhcCC--------------chHHHHHHHHHhc
Q 038516          631 LYAATGR--------------WDCVAKMRRKMKG  650 (708)
Q Consensus       631 ~~~~~g~--------------~~eA~~~~~~~~~  650 (708)
                      +|...|+              +++|.+.+++..+
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~  148 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR  148 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence            8888776              4556666655544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.79  E-value=0.0011  Score=69.50  Aligned_cols=139  Identities=16%  Similarity=0.050  Sum_probs=62.6

Q ss_pred             CCChHHHHHHHHHHHh--cC---ChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhcc--------CcHHHHHHHHHHhh
Q 038516          482 HPDLKCWNALLGGYSH--YG---MAEEAFMVFEVILEHGLRPDE-ITFLSLLSACSHS--------GLVERGKILWNQMK  547 (708)
Q Consensus       482 ~~~~~~~~~li~~~~~--~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------~~~~~a~~~~~~~~  547 (708)
                      ..|...|...+++...  .+   +...|..+|+++++  ..|+. ..+..+..++...        .+...+.+..++..
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~  411 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV  411 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence            4566777777766433  22   36688888999888  47764 3333332222111        11122222222222


Q ss_pred             HC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516          548 EH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG  622 (708)
Q Consensus       548 ~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  622 (708)
                      .. ....+...|..+.-.....|++++|...++++....|+...|..++..+...|+.++|...+++++.++|.++
T Consensus       412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p  487 (517)
T PRK10153        412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN  487 (517)
T ss_pred             hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence            11 1111223344343333344444444444444422223444444444444444444444444444444444444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.74  E-value=0.0011  Score=69.34  Aligned_cols=135  Identities=13%  Similarity=0.069  Sum_probs=99.8

Q ss_pred             CCCChHHHHHHHHHHhc--c---CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhc--------CCHHHHHHHHHhC
Q 038516          516 LRPDEITFLSLLSACSH--S---GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRA--------GLLDEAENLIAES  581 (708)
Q Consensus       516 ~~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~  581 (708)
                      .+.|...|...+.+...  .   +....|..+|++.++  ..|+ ...|..+..++...        ++++.+.+..++.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            45677888888886433  2   347799999999998  6676 44555554444322        2234555555553


Q ss_pred             ---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          582 ---PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       582 ---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                         +..+.++..+..+.-.....|++++|...++++++++| +...|..+|.+|...|+.++|.+.++++....+
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P  484 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP  484 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence               22334667777777777778999999999999999999 477899999999999999999999998876544

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.74  E-value=0.00099  Score=59.22  Aligned_cols=129  Identities=18%  Similarity=0.149  Sum_probs=81.2

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHH
Q 038516          485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD--EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCM  561 (708)
Q Consensus       485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l  561 (708)
                      ...+..+...+...|++++|...|++.......+.  ...+..+...+.+.|++++|...+++..+  ..|+ ...+..+
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l  112 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNI  112 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHH
Confidence            44566677777778888888888888776432222  24566666677777777777777777776  3332 4455556


Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516          562 VSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR  637 (708)
Q Consensus       562 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  637 (708)
                      +.++...|+...+..-++.+                   ...+++|.+.++++++.+|++   +..++..+...|+
T Consensus       113 g~~~~~~g~~~~a~~~~~~A-------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQDEA-------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHHcCChHhHhhCHHHH-------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            66666666655544332221                   123677888999999999987   4444444444443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.70  E-value=0.028  Score=53.91  Aligned_cols=210  Identities=14%  Similarity=0.075  Sum_probs=132.9

Q ss_pred             CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhC-----CCCChHH--HHHHHHHH---HhcCC
Q 038516          431 DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQV-----LHPDLKC--WNALLGGY---SHYGM  500 (708)
Q Consensus       431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~--~~~li~~~---~~~g~  500 (708)
                      +.|..+.|.++-+..-..- +.-.....+.+...+..|+++.|+++++.-     +.+++.-  --.|+.+-   .-.-+
T Consensus       166 r~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldad  244 (531)
T COG3898         166 RLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDAD  244 (531)
T ss_pred             hcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCC
Confidence            4455555555544443322 112334456666677777777777777643     2333321  11122211   11235


Q ss_pred             hHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516          501 AEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIA  579 (708)
Q Consensus       501 ~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  579 (708)
                      ...|...-.+..+  +.||... -..-..++.+.|+..++-.+++.+-+.  .|.+..+.  ...+.+.|+.  ++.-++
T Consensus       245 p~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~--lY~~ar~gdt--a~dRlk  316 (531)
T COG3898         245 PASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIAL--LYVRARSGDT--ALDRLK  316 (531)
T ss_pred             hHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHH--HHHHhcCCCc--HHHHHH
Confidence            6667776666666  6888654 344455899999999999999999984  45444432  2334556653  333333


Q ss_pred             hC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHhc
Q 038516          580 ES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT-GRWDCVAKMRRKMKG  650 (708)
Q Consensus       580 ~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~  650 (708)
                      +.    ..++.+.+....+..+....|++-.|....+.+....|.. ++|..|+++-... |+-.+++..+.+..+
T Consensus       317 Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         317 RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            22    3343466777777778888999999999999999999975 5688888887766 999999988877654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.70  E-value=2.5e-05  Score=46.99  Aligned_cols=32  Identities=22%  Similarity=0.442  Sum_probs=30.7

Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038516          611 AEQVLRLDPEDGTTHILLSNLYAATGRWDCVA  642 (708)
Q Consensus       611 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~  642 (708)
                      ++++++++|+++.+|..|+.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            68999999999999999999999999999996

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.70  E-value=0.11  Score=55.63  Aligned_cols=159  Identities=16%  Similarity=0.071  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhcCChH---HHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHH
Q 038516          487 CWNALLGGYSHYGMAE---EAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMV  562 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~  562 (708)
                      +-+.|+..+.+.++..   +|+-+++.-...  .| |..+-..++..|+-.|-+..|.++|+.+--+.+.-|..-|- +.
T Consensus       438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~--s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~  514 (932)
T KOG2053|consen  438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTK--SPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IF  514 (932)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc--CCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HH
Confidence            4567788888888765   455566665553  34 45555667888888899999999999886655655544332 33


Q ss_pred             HHHHhcCCHHHHHHHHHhCC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcC
Q 038516          563 SLLSRAGLLDEAENLIAESP-YSE-IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE----DGTTHILLSNLYAATG  636 (708)
Q Consensus       563 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g  636 (708)
                      ..+...|++..+...++... .-. .-.++-..+..+| +.|.+.+-.++..---++.-.    -..+-......+...+
T Consensus       515 ~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~  593 (932)
T KOG2053|consen  515 RRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNAD  593 (932)
T ss_pred             HHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            55667788888777776651 110 1122222233333 455555544442211111111    1111234555666777


Q ss_pred             CchHHHHHHHHHh
Q 038516          637 RWDCVAKMRRKMK  649 (708)
Q Consensus       637 ~~~eA~~~~~~~~  649 (708)
                      +.++-.+....|.
T Consensus       594 ~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  594 RGTQLLKLLESMK  606 (932)
T ss_pred             cHHHHHHHHhccc
Confidence            8777777776664

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.64  E-value=0.0092  Score=50.90  Aligned_cols=145  Identities=12%  Similarity=-0.008  Sum_probs=104.5

Q ss_pred             CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHH
Q 038516          499 GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLI  578 (708)
Q Consensus       499 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  578 (708)
                      =|++...+-..+-.+  ..|....-..|..++...|+..+|...|++...--+--|....-.+.++....+++.+|...+
T Consensus        70 ldP~R~~Rea~~~~~--~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tL  147 (251)
T COG4700          70 LDPERHLREATEELA--IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTL  147 (251)
T ss_pred             cChhHHHHHHHHHHh--hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHH
Confidence            344444443333333  467776777788888889999999999988877333345777777888888899999999888


Q ss_pred             HhCCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516          579 AESPYSEI---RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       579 ~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~  646 (708)
                      +++...+|   ++.....+...+...|....|+..++.++.--|+. ......+..+.++|+.+||..-..
T Consensus       148 e~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~La~qgr~~ea~aq~~  217 (251)
T COG4700         148 EDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEMLAKQGRLREANAQYV  217 (251)
T ss_pred             HHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHHHHhcchhHHHHHHH
Confidence            88733222   34555667778888999999999999999888864 346667778889998888865443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.59  E-value=0.0013  Score=62.18  Aligned_cols=94  Identities=10%  Similarity=-0.015  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHH
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAESPYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG---TTHILLSN  630 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~  630 (708)
                      |..-+..+.+.|++++|...|+......|+    +..+-.++..+...|+++.|...|+++++..|+++   .++..++.
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            444444445567777777766665221122    34566667777777777777777777777766643   34555677


Q ss_pred             HHHhcCCchHHHHHHHHHhcC
Q 038516          631 LYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       631 ~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +|...|++++|..+++++.+.
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            777777777777777776653

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.58  E-value=0.00017  Score=55.02  Aligned_cols=80  Identities=21%  Similarity=0.239  Sum_probs=42.1

Q ss_pred             cCChHHHHHHHHHHHHCCCC-CChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHH
Q 038516          498 YGMAEEAFMVFEVILEHGLR-PDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAE  575 (708)
Q Consensus       498 ~g~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~  575 (708)
                      .|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. .+  ..|+ ......++.++...|++++|+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~--~~~~~~~~~~l~a~~~~~l~~y~eAi   78 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK--LDPSNPDIHYLLARCLLKLGKYEEAI   78 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT--HHHCHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC--CCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            46666777777776664211 1223333455566666666666666666 21  2221 233334466666666666666


Q ss_pred             HHHHh
Q 038516          576 NLIAE  580 (708)
Q Consensus       576 ~~~~~  580 (708)
                      +.+++
T Consensus        79 ~~l~~   83 (84)
T PF12895_consen   79 KALEK   83 (84)
T ss_dssp             HHHHH
T ss_pred             HHHhc
Confidence            66654

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.58  E-value=0.09  Score=51.36  Aligned_cols=110  Identities=14%  Similarity=0.141  Sum_probs=73.0

Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGL  535 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  535 (708)
                      +.+..+.-+...|+...|.++-.+..-|+-.-|...+.+++..+++++-.++...    .  -.+.-|...+.+|.+.|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~~~~~~  252 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEACLKYGN  252 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHHHHCCC
Confidence            3444455566677777788777777777777788888888888888776654332    1  123567777777777777


Q ss_pred             HHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          536 VERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       536 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      ..+|..+..++.          +..-+..|.++|++.+|.+.--+.
T Consensus       253 ~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  253 KKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence            777777766621          233456677777777777665443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.57  E-value=0.0027  Score=61.26  Aligned_cols=136  Identities=13%  Similarity=0.139  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH-HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSA-CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL  564 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  564 (708)
                      .+|..++....+.+..+.|..+|.++.+.+ ..+...|...... +...++.+.|.++|+...+. +..+...|...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            467788888888888999999999998542 2233444443333 33356777799999998874 44456778888899


Q ss_pred             HHhcCCHHHHHHHHHhCCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          565 LSRAGLLDEAENLIAESPYSEIRI----ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      +...|+.+.|..+|++.-...+..    .+|...+..-...|+++....+.+++.+.-|++..
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~~  142 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDNS  142 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-H
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhhH
Confidence            999999999999999984333444    48999999999999999999999999999888655

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.56  E-value=0.00093  Score=54.18  Aligned_cols=88  Identities=16%  Similarity=0.067  Sum_probs=63.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHH
Q 038516          561 MVSLLSRAGLLDEAENLIAESPYSEI----RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE---DGTTHILLSNLYA  633 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~  633 (708)
                      +..++-..|+.++|..+|++......    ....+-.+...++..|++++|+.++++.+...|+   +......++.++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            45667777888888888777622111    1345666777788888888888888888887777   6666677777888


Q ss_pred             hcCCchHHHHHHHHH
Q 038516          634 ATGRWDCVAKMRRKM  648 (708)
Q Consensus       634 ~~g~~~eA~~~~~~~  648 (708)
                      ..|+++||.+.+-..
T Consensus        87 ~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   87 NLGRPKEALEWLLEA  101 (120)
T ss_pred             HCCCHHHHHHHHHHH
Confidence            888888888776544

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.55  E-value=0.014  Score=59.44  Aligned_cols=183  Identities=14%  Similarity=0.114  Sum_probs=101.1

Q ss_pred             HHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHH
Q 038516          341 HALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNF  420 (708)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~  420 (708)
                      ++++.+.|-.|+...   +...++-.|.+.+|-++|.                  +.|.-..|+++|.+|.--       
T Consensus       623 L~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk------------------~~G~enRAlEmyTDlRMF-------  674 (1081)
T KOG1538|consen  623 LEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFK------------------RSGHENRALEMYTDLRMF-------  674 (1081)
T ss_pred             HHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHH------------------HcCchhhHHHHHHHHHHH-------
Confidence            455666666566543   4455666777777777764                  355666677777666421       


Q ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCC
Q 038516          421 ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGM  500 (708)
Q Consensus       421 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~  500 (708)
                         -..+-+...|..++-..+.+.-.+..  -+..--.+-..++...|+.++|..+.                  ..+|-
T Consensus       675 ---D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~------------------~d~gW  731 (1081)
T KOG1538|consen  675 ---DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC------------------GDHGW  731 (1081)
T ss_pred             ---HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh------------------hcccH
Confidence               11222334444444444333222110  01111123345566677777777554                  33344


Q ss_pred             hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038516          501 AEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAE  580 (708)
Q Consensus       501 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~  580 (708)
                      .+-+.++-+++...    +..+...+..-+.+...+.-|-++|.+|-+         ...+++.....++|.+|..+-++
T Consensus       732 ~d~lidI~rkld~~----ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~  798 (1081)
T KOG1538|consen  732 VDMLIDIARKLDKA----EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEK  798 (1081)
T ss_pred             HHHHHHHHhhcchh----hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhh
Confidence            44455554444332    334444455555566667777788877754         34567778888888888888888


Q ss_pred             CCCCCCC
Q 038516          581 SPYSEIR  587 (708)
Q Consensus       581 ~~~~~~~  587 (708)
                      .|.-.|+
T Consensus       799 hPe~~~d  805 (1081)
T KOG1538|consen  799 HPEFKDD  805 (1081)
T ss_pred             Ccccccc
Confidence            8655333

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.55  E-value=0.0018  Score=57.35  Aligned_cols=66  Identities=11%  Similarity=0.066  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHH-------hcCCHH-------HHHHHHHHHHhcCCCC
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCV-------AKRNSR-------MVIQAAEQVLRLDPED  621 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~-------~~~~~~-------~a~~~~~~~~~~~p~~  621 (708)
                      ++..++.++...|++++|...++++.. .+.....+..+...+.       ..|+++       +|...++++++.+|++
T Consensus        74 ~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033         74 ILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence            344444455555555555555544411 1112333333333333       444444       6666677777888865


Q ss_pred             c
Q 038516          622 G  622 (708)
Q Consensus       622 ~  622 (708)
                      .
T Consensus       154 ~  154 (168)
T CHL00033        154 Y  154 (168)
T ss_pred             H
Confidence            3

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.52  E-value=0.0012  Score=51.82  Aligned_cols=62  Identities=18%  Similarity=0.187  Sum_probs=31.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  619 (708)
                      +..++..+...|++++|.+.+++. ...+.+...+..+...+...|+.+.|...++++++..|
T Consensus        37 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          37 YYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence            334444455555555555555443 11112234455555555556666666666666655554

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.50  E-value=0.00015  Score=42.85  Aligned_cols=29  Identities=24%  Similarity=0.433  Sum_probs=18.1

Q ss_pred             cHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Q 038516           81 SYNALIAAYSRDHDHAHLTFRLIDQMEFEC  110 (708)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g  110 (708)
                      +||.+|++|++.|+ +++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~-~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQ-FEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccch-HHHHHHHHHHHhHCc
Confidence            56666666666666 666666666666554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.50  E-value=0.00013  Score=43.07  Aligned_cols=31  Identities=35%  Similarity=0.611  Sum_probs=23.1

Q ss_pred             ccHHHHHHHHhcCCChhHHHHHHHHHHhCCC
Q 038516          182 VAWNSIILGNFKNDKMKEGLSLFGAMVGSGV  212 (708)
Q Consensus       182 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  212 (708)
                      ++||.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3677777777777777777777777777653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.50  E-value=0.006  Score=51.97  Aligned_cols=104  Identities=15%  Similarity=0.194  Sum_probs=90.8

Q ss_pred             CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--Ccch
Q 038516          550 SLIPGHKHYSCMVSLLSRAGLLDEAENLIAES---PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE--DGTT  624 (708)
Q Consensus       550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~  624 (708)
                      .+-|+...-..|...+.+.|++.||...|++.   +.. .|+..+..+..+....++..+|...++++.+.+|.  .+..
T Consensus        84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~  162 (251)
T COG4700          84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG  162 (251)
T ss_pred             hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence            46688888888999999999999999999997   333 68889999999999999999999999999999886  4556


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhcCCCc
Q 038516          625 HILLSNLYAATGRWDCVAKMRRKMKGSMLG  654 (708)
Q Consensus       625 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  654 (708)
                      ...++++|..+|++.+|+..|+.+.+....
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg  192 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISYYPG  192 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHhCCC
Confidence            788999999999999999999988776443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.47  E-value=0.00025  Score=51.77  Aligned_cols=66  Identities=17%  Similarity=0.211  Sum_probs=54.3

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCC
Q 038516          554 GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKR-NSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p  619 (708)
                      ++..|..++..+...|++++|+..|+++ ...+.++..|..++.++...| ++++|...++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3566778888889999999999998887 333346778888888899998 79999999999999988

...

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.47  E-value=0.00013  Score=53.09  Aligned_cols=62  Identities=21%  Similarity=0.231  Sum_probs=30.4

Q ss_pred             hcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516          567 RAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL  628 (708)
Q Consensus       567 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  628 (708)
                      ..|++++|.++++++ ...|.+..++..++.+|...|++++|...++++...+|+++..+..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~   65 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLL   65 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence            345555555555554 12212444555555555555555555555555555555554443333

...

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.47  E-value=0.0058  Score=51.48  Aligned_cols=89  Identities=10%  Similarity=-0.077  Sum_probs=51.6

Q ss_pred             HHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHH
Q 038516          528 SACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSR  605 (708)
Q Consensus       528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~  605 (708)
                      .-+...|++++|.++|+-+..  +.|. ..-|-.|+-++...|++++|+..|..+ ...+.++..+-.+..++...|+.+
T Consensus        43 ~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~  120 (157)
T PRK15363         43 MQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVC  120 (157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHH
Confidence            344455666666666665554  3333 334445666666666666666666665 222245555666666666667777


Q ss_pred             HHHHHHHHHHhcC
Q 038516          606 MVIQAAEQVLRLD  618 (708)
Q Consensus       606 ~a~~~~~~~~~~~  618 (708)
                      .|++.|+.++...
T Consensus       121 ~A~~aF~~Ai~~~  133 (157)
T PRK15363        121 YAIKALKAVVRIC  133 (157)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777766666654

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.39  E-value=0.17  Score=49.97  Aligned_cols=61  Identities=11%  Similarity=0.079  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          587 RIELWRTLLST--CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       587 ~~~~~~~l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      +.++-+.|..+  +..+|++.++.-...-+.+..| ++.+|..+|-++....+|+||..++..+
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            45666666665  5679999999999999999999 8899999999999999999999999865

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.36  E-value=0.00033  Score=45.38  Aligned_cols=42  Identities=19%  Similarity=0.264  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516          589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN  630 (708)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  630 (708)
                      ..|..+...+...|++++|++.++++++.+|+++.++..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467888999999999999999999999999999998888874

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.35  E-value=0.15  Score=52.89  Aligned_cols=152  Identities=13%  Similarity=0.080  Sum_probs=89.3

Q ss_pred             CCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCC----HhHHHHHHHHHcCCCCccchHH
Q 038516          264 CSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPD----EYTFAAIISATSALPASAYGKP  339 (708)
Q Consensus       264 ~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~  339 (708)
                      -|++++|.+++-.+.++|.     .|..+.+.|+|-...++++.   . |-..|    ...++.+...++....++.|.+
T Consensus       747 ~g~feeaek~yld~drrDL-----Aielr~klgDwfrV~qL~r~---g-~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~  817 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRRDL-----AIELRKKLGDWFRVYQLIRN---G-GSDDDDEGKEDAFRNIGETFAEMMEWEEAAK  817 (1189)
T ss_pred             hcchhHhhhhhhccchhhh-----hHHHHHhhhhHHHHHHHHHc---c-CCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4888899888888877653     34555666777665555532   1 21122    2345566666666666666666


Q ss_pred             HHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCH
Q 038516          340 LHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDN  419 (708)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~  419 (708)
                      .+..-...         ..++.++.+..++++.+.+-..+++ +....-.+...+...|.-++|.+.+-+.   + .|  
T Consensus       818 yY~~~~~~---------e~~~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p--  881 (1189)
T KOG2041|consen  818 YYSYCGDT---------ENQIECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP--  881 (1189)
T ss_pred             HHHhccch---------HhHHHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc--
Confidence            66542211         2356667776677766666665555 3344555667777777777777666432   1 11  


Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHH
Q 038516          420 FALSGALSACADLAILKQGEMIHS  443 (708)
Q Consensus       420 ~t~~~ll~~~~~~~~~~~a~~~~~  443 (708)
                         ...+..|...++|.+|.++-+
T Consensus       882 ---kaAv~tCv~LnQW~~avelaq  902 (1189)
T KOG2041|consen  882 ---KAAVHTCVELNQWGEAVELAQ  902 (1189)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHH
Confidence               134556666777766666544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.34  E-value=0.27  Score=51.17  Aligned_cols=152  Identities=13%  Similarity=0.087  Sum_probs=89.7

Q ss_pred             cchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCC-----CcccHHHHHHHHhcCCChhHHHHH
Q 038516          129 EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDK-----DAVAWNSIILGNFKNDKMKEGLSL  203 (708)
Q Consensus       129 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~  203 (708)
                      |++++|++++-++-+..         ..|.++.+.|||-.+.++++.-...     -..+|+.+...+.....+++|.+.
T Consensus       748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y  818 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY  818 (1189)
T ss_pred             cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666555443332         3455666777777777776653321     124677777777777777777777


Q ss_pred             HHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChh
Q 038516          204 FGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLV  283 (708)
Q Consensus       204 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  283 (708)
                      |..-..         -...+.++.+..++++-+.+-.     .++.+....-.+.+++.+.|.-++|.+.|-+-..|.  
T Consensus       819 Y~~~~~---------~e~~~ecly~le~f~~LE~la~-----~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk--  882 (1189)
T KOG2041|consen  819 YSYCGD---------TENQIECLYRLELFGELEVLAR-----TLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK--  882 (1189)
T ss_pred             HHhccc---------hHhHHHHHHHHHhhhhHHHHHH-----hcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH--
Confidence            765432         1223445554444444333322     246677777788888888888888877665554442  


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHH
Q 038516          284 SWNSMIAGYMENGNGEKAVDMFVAL  308 (708)
Q Consensus       284 ~~~~li~~~~~~g~~~~A~~~~~~m  308 (708)
                         +.+..|...++|.+|.++-+..
T Consensus       883 ---aAv~tCv~LnQW~~avelaq~~  904 (1189)
T KOG2041|consen  883 ---AAVHTCVELNQWGEAVELAQRF  904 (1189)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHhc
Confidence               2345556666676666665543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.33  E-value=0.0054  Score=58.02  Aligned_cols=99  Identities=12%  Similarity=0.114  Sum_probs=73.9

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC----hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHH
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPG----HKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTL  594 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l  594 (708)
                      |...+....+.|++++|...|+.+++.  .|+    ...+..++.+|...|++++|...|+++    |..+..+..+..+
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl  223 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV  223 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence            444444445567888888888887763  232    245667888888999999998888777    3333346677777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      +..+...|+.+.|...++++++..|++..
T Consensus       224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        224 GVIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            78888899999999999999999998764

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.33  E-value=0.00092  Score=66.16  Aligned_cols=66  Identities=15%  Similarity=-0.015  Sum_probs=48.1

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT---HILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      .+...|..+..+|...|++++|+..++++++++|++..+   |.+++.+|..+|+.++|+..++++.+.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456667777777777777777777777777777777643   777777777777777777777776653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.33  E-value=0.037  Score=51.96  Aligned_cols=170  Identities=11%  Similarity=0.081  Sum_probs=101.2

Q ss_pred             HHhhHhcCCHHHHHHHHhhCCC--CChH-H---HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhc
Q 038516          461 VDMYAKNGDLRAAESIFSQVLH--PDLK-C---WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSH  532 (708)
Q Consensus       461 ~~~~~~~g~~~~A~~~~~~~~~--~~~~-~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~  532 (708)
                      ...+...|++++|.+.|+.+..  |+.. .   .-.++.+|.+.+++++|...+++.++.  .|+.  ..+...+.+.+.
T Consensus        39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         39 AQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHhh
Confidence            3344567788888888877742  3221 1   234556777888888888888888874  4432  233333333321


Q ss_pred             --c---------------Cc---HHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHH
Q 038516          533 --S---------------GL---VERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWR  592 (708)
Q Consensus       533 --~---------------~~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  592 (708)
                        .               .|   ..+|...|+.++               +.|-...-..+|...+..+... . ..---
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li---------------~~yP~S~ya~~A~~rl~~l~~~-l-a~~e~  179 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV---------------RGYPNSQYTTDATKRLVFLKDR-L-AKYEL  179 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH---------------HHCcCChhHHHHHHHHHHHHHH-H-HHHHH
Confidence              0               11   122333333333               3333333344554444333211 0 00111


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc---hHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          593 TLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT---THILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       593 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      .+...|.+.|++..|..-++.+++.-|+.+.   +...++.+|...|..++|..+...+.
T Consensus       180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            3455688899999999999999998887654   46678899999999999999887654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.31  E-value=0.002  Score=61.80  Aligned_cols=128  Identities=11%  Similarity=-0.007  Sum_probs=86.5

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhH----CCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHH
Q 038516          522 TFLSLLSACSHSGLVERGKILWNQMKE----HSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIE  589 (708)
Q Consensus       522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~  589 (708)
                      .|..|...|.-.|+++.|+...+.-..    -|-.. ....+..+.+++.-.|+++.|.+.|+..       ..+.....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            355556666667888888876654322    13322 3556778888888889999888888764       22222344


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhc----C--CCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          590 LWRTLLSTCVAKRNSRMVIQAAEQVLRL----D--PEDGTTHILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      .--+|...|....+++.|+.+..+-+.+    +  -....++..|+++|...|..+.|..+.++-.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            5566777777777888888887765543    2  2234567788899999999998887766543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.28  E-value=0.056  Score=52.47  Aligned_cols=148  Identities=9%  Similarity=-0.003  Sum_probs=68.6

Q ss_pred             HHhcCChHHHHHHHHHHHHC---CCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCC
Q 038516          495 YSHYGMAEEAFMVFEVILEH---GLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGL  570 (708)
Q Consensus       495 ~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~  570 (708)
                      ..+.|++..|.+.+.+.+..   .++|+...|.....+..+.|+.++|+.-.+...+  +.|+ ...|-.-+.++...++
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~  336 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK  336 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence            34556666666666666552   1222233344444455556666666655555543  2222 1122222334444555


Q ss_pred             HHHHHHHHHhCCCCCCCHHH---H---------------HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch--------
Q 038516          571 LDEAENLIAESPYSEIRIEL---W---------------RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT--------  624 (708)
Q Consensus       571 ~~~A~~~~~~~~~~~~~~~~---~---------------~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--------  624 (708)
                      |++|.+-++++.....+..+   |               -.++..-....+.+--...-..++...|+-...        
T Consensus       337 ~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~k  416 (486)
T KOG0550|consen  337 WEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAK  416 (486)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHH
Confidence            66666665554111011111   1               111111122222223333334455556664332        


Q ss_pred             HHHHHHHHHhcCCchHHHHH
Q 038516          625 HILLSNLYAATGRWDCVAKM  644 (708)
Q Consensus       625 ~~~l~~~~~~~g~~~eA~~~  644 (708)
                      +...+.+|...++..++.+.
T Consensus       417 FkevgeAy~il~d~~kr~r~  436 (486)
T KOG0550|consen  417 FKEVGEAYTILSDPMKRVRF  436 (486)
T ss_pred             HHHHHHHHHHhcCHHHHhhc
Confidence            44677788888888877665

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.25  E-value=0.13  Score=50.33  Aligned_cols=41  Identities=15%  Similarity=0.112  Sum_probs=17.9

Q ss_pred             HHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHH
Q 038516          363 YFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECA  403 (708)
Q Consensus       363 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A  403 (708)
                      +...|+...|.++..+..-++-..|-..+.+++..++|++-
T Consensus       187 li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL  227 (319)
T PF04840_consen  187 LIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDEL  227 (319)
T ss_pred             HHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHH
Confidence            33344444444444444444444444444444444444443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.25  E-value=0.0017  Score=50.37  Aligned_cols=79  Identities=14%  Similarity=0.152  Sum_probs=64.1

Q ss_pred             HHHHHHHhcCCChhHHHHHHHHHHhCCC-CCCcchHHHHHHHHhccC--------ChhHHHHHHHHHHHhCCCCChhhHH
Q 038516          185 NSIILGNFKNDKMKEGLSLFGAMVGSGV-NPTQFSYSMLLNACSRMG--------NFVCGKVIHARVIISNTQVDLPLEN  255 (708)
Q Consensus       185 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~  255 (708)
                      ...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .+-....+++.++..++.|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3456667777999999999999999999 999999999999987643        2345667888888888899998888


Q ss_pred             HHHHhccc
Q 038516          256 ALLDMYSK  263 (708)
Q Consensus       256 ~l~~~~~~  263 (708)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            88876643

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.24  E-value=0.0012  Score=48.85  Aligned_cols=66  Identities=17%  Similarity=0.224  Sum_probs=54.1

Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516          562 VSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL  627 (708)
Q Consensus       562 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  627 (708)
                      ...|.+.+++++|.++++++ ...|.++..|...+..+...|++++|...++++++..|+++.....
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            35688899999999999888 3333467778888888999999999999999999999988765443

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.20  E-value=0.005  Score=61.80  Aligned_cols=121  Identities=15%  Similarity=0.065  Sum_probs=76.9

Q ss_pred             CCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC----CCChH
Q 038516          413 EGLKCDNFALSGALSACADLAILKQGEMIHSQAEKT--GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL----HPDLK  486 (708)
Q Consensus       413 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~  486 (708)
                      .+.+.+...+..+++.+....+++.+..++-.....  ....-+.+..++++.|.+.|..+.+..+++.=.    -||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            445666777777777777777777777776666543  222223344467777777777777777765542    36677


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS  533 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  533 (708)
                      ++|.||..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            77777777777777777777766666665555556655555555443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.18  E-value=0.065  Score=52.02  Aligned_cols=123  Identities=16%  Similarity=0.216  Sum_probs=58.3

Q ss_pred             HHHHhhHhc-CCHHHHHHHHhhCC-----CCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-----hH-H
Q 038516          459 SLVDMYAKN-GDLRAAESIFSQVL-----HPD----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-----EI-T  522 (708)
Q Consensus       459 ~l~~~~~~~-g~~~~A~~~~~~~~-----~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~-~  522 (708)
                      .+...|... |+++.|.+.|++..     ...    ..++..+...+.+.|++++|.++|++....-...+     .. .
T Consensus       119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~  198 (282)
T PF14938_consen  119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY  198 (282)
T ss_dssp             HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence            344455555 66666666665552     111    22344555666667777777777776665422211     11 1


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHC--CCCcC--hHHHHHHHHHHHhc--CCHHHHHHHHHhC
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEH--SLIPG--HKHYSCMVSLLSRA--GLLDEAENLIAES  581 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~--~~~~~~l~~~~~~~--g~~~~A~~~~~~~  581 (708)
                      |...+-++...||...|.+.+++....  ++..+  ......|+.++-..  ..+++|..-|+.+
T Consensus       199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~  263 (282)
T PF14938_consen  199 FLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSI  263 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHccc
Confidence            222222445556666666666666543  22222  23344455555432  2445555555554

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.16  E-value=0.0091  Score=46.52  Aligned_cols=79  Identities=9%  Similarity=0.148  Sum_probs=64.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCC-CCChHHHHHHHHHHhccC--------cHHHHHHHHHHhhHCCCCcChHHHH
Q 038516          489 NALLGGYSHYGMAEEAFMVFEVILEHGL-RPDEITFLSLLSACSHSG--------LVERGKILWNQMKEHSLIPGHKHYS  559 (708)
Q Consensus       489 ~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~p~~~~~~  559 (708)
                      ...|..+...+++...-.+|+.+++.|+ -|+..+|+.++.+.++..        +.-..+.+|+.|...+++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3456666677999999999999999999 899999999998765532        3556778899999889999999999


Q ss_pred             HHHHHHHh
Q 038516          560 CMVSLLSR  567 (708)
Q Consensus       560 ~l~~~~~~  567 (708)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            98887764

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.12  E-value=0.01  Score=59.58  Aligned_cols=113  Identities=11%  Similarity=0.051  Sum_probs=82.6

Q ss_pred             eehhhHHHHhcCCChHHHHHHHHHHhHC--CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHh
Q 038516          386 LWTEMIIGHSRMGDGECAIKLFCKMCRE--GLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDM  463 (708)
Q Consensus       386 ~~~~li~~~~~~~~~~~A~~~~~~m~~~--g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  463 (708)
                      ....++..+....+.+.+..++.+....  ....-..|..++++.|.+.|..+.+..++..-...|+-||..++|.|++.
T Consensus        68 dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~  147 (429)
T PF10037_consen   68 DLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDH  147 (429)
T ss_pred             HHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHH
Confidence            3445566666667777888888877664  33344556678888888888888888888888888888899999999999


Q ss_pred             hHhcCCHHHHHHHHhhCC----CCChHHHHHHHHHHHhc
Q 038516          464 YAKNGDLRAAESIFSQVL----HPDLKCWNALLGGYSHY  498 (708)
Q Consensus       464 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~  498 (708)
                      +.+.|++..|.++...|.    -.+..|+..-+.+|.+-
T Consensus       148 fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  148 FLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999988888887773    23445555444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.11  E-value=0.012  Score=48.77  Aligned_cols=92  Identities=13%  Similarity=0.087  Sum_probs=70.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch---HHHHHHHH
Q 038516          560 CMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT---HILLSNLY  632 (708)
Q Consensus       560 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~  632 (708)
                      .-+....+.|++++|.+.|+.+    |..+-....-..++.++...++++.|...+++.++++|.++.+   +...|-++
T Consensus        15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            3455667889999999999887    4443456677888899999999999999999999999998764   45556566


Q ss_pred             HhcCC---------------chHHHHHHHHHhcC
Q 038516          633 AATGR---------------WDCVAKMRRKMKGS  651 (708)
Q Consensus       633 ~~~g~---------------~~eA~~~~~~~~~~  651 (708)
                      ..+..               ..+|...|+.+.++
T Consensus        95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~  128 (142)
T PF13512_consen   95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRR  128 (142)
T ss_pred             HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHH
Confidence            66654               66777777777654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.10  E-value=0.13  Score=49.71  Aligned_cols=181  Identities=18%  Similarity=0.154  Sum_probs=109.3

Q ss_pred             cCCHHHHHHHHhhC---CCCChHHHHHHHH--HHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHH
Q 038516          467 NGDLRAAESIFSQV---LHPDLKCWNALLG--GYSHYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHSGLVERG  539 (708)
Q Consensus       467 ~g~~~~A~~~~~~~---~~~~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a  539 (708)
                      .|+-..|.++-.+.   +..|....-.++.  +-.-.|+++.|.+-|+.|..   .|..  .-+..|.-.-.+.|+.+.|
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaA  173 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAA  173 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHH
Confidence            45555555554433   2233333333332  23345788888888888776   2322  1233333344566777777


Q ss_pred             HHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCCHH--HHHHHHHH---HHhcCCHHHHHHH
Q 038516          540 KILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES---PYSEIRIE--LWRTLLST---CVAKRNSRMVIQA  610 (708)
Q Consensus       540 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~--~~~~l~~~---~~~~~~~~~a~~~  610 (708)
                      .++-+....  .-|. .=.+...+...+..|+|+.|+++++..   ....++..  .-..|+.+   -....|...|...
T Consensus       174 r~yAe~Aa~--~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~  251 (531)
T COG3898         174 RHYAERAAE--KAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD  251 (531)
T ss_pred             HHHHHHHHh--hccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            777776664  3343 223555667777888888888887664   11112211  11222222   1224577888888


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          611 AEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       611 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      ..++.++.|+-...-..-+.+|++.|+..++-.+++.+=+..
T Consensus       252 A~~a~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e  293 (531)
T COG3898         252 ALEANKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE  293 (531)
T ss_pred             HHHHhhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence            888899999988888888889999999999998888876543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.06  E-value=0.22  Score=51.28  Aligned_cols=75  Identities=9%  Similarity=-0.043  Sum_probs=37.8

Q ss_pred             HHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHH
Q 038516          324 IISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECA  403 (708)
Q Consensus       324 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A  403 (708)
                      +...+.+...+..|-++|..|-..         .+++..+...++|++|..+-+..++--...|-...+-++...++++|
T Consensus       753 ~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEA  823 (1081)
T KOG1538|consen  753 CATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEA  823 (1081)
T ss_pred             HHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHH
Confidence            333334444444555555444322         24556666667777777766666654333344444444444444444


Q ss_pred             HHHH
Q 038516          404 IKLF  407 (708)
Q Consensus       404 ~~~~  407 (708)
                      .+.|
T Consensus       824 qkAf  827 (1081)
T KOG1538|consen  824 QKAF  827 (1081)
T ss_pred             HHHH
Confidence            4433

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.05  E-value=0.0043  Score=53.46  Aligned_cols=90  Identities=17%  Similarity=0.203  Sum_probs=71.7

Q ss_pred             HHHHHhcCCHHHHHHHHHhC----CCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516          562 VSLLSRAGLLDEAENLIAES----PYSE--IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       562 ~~~~~~~g~~~~A~~~~~~~----~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  635 (708)
                      ++-+...|++++|..-|..+    |...  ....+|..-..+..+.+..+.|+..+.++++++|....++...+.+|.+.
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            35577888899988888776    2110  12334444555677899999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhcC
Q 038516          636 GRWDCVAKMRRKMKGS  651 (708)
Q Consensus       636 g~~~eA~~~~~~~~~~  651 (708)
                      .++++|++-++++...
T Consensus       182 ek~eealeDyKki~E~  197 (271)
T KOG4234|consen  182 EKYEEALEDYKKILES  197 (271)
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            9999999999988775

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.03  E-value=0.018  Score=55.82  Aligned_cols=167  Identities=16%  Similarity=0.187  Sum_probs=79.6

Q ss_pred             hHHHHHHHhhHhcCCHHHHHHHHhhCC-------CC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHH----CCCCCCh-
Q 038516          455 SVCGSLVDMYAKNGDLRAAESIFSQVL-------HP--DLKCWNALLGGYSHYGMAEEAFMVFEVILE----HGLRPDE-  520 (708)
Q Consensus       455 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~-  520 (708)
                      ..|......|...|++++|.+.|.+..       .+  -...|......|.+. ++++|+..+++..+    .| .|+. 
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a  113 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA  113 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence            345555666666667766666665541       11  112344444444333 66666666666554    22 2222 


Q ss_pred             -HHHHHHHHHHhcc-CcHHHHHHHHHHhhHC----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCC--C
Q 038516          521 -ITFLSLLSACSHS-GLVERGKILWNQMKEH----SLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESP---YSEI--R  587 (708)
Q Consensus       521 -~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~--~  587 (708)
                       ..+..+...|... |++++|++.|++..+.    + .+.  ...+..++..+.+.|++++|.++|++..   ...+  .
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~  192 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLK  192 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccc
Confidence             2344455556555 6666666666665543    2 111  3344455566666666666666665541   1101  1


Q ss_pred             HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516          588 IEL---WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT  624 (708)
Q Consensus       588 ~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  624 (708)
                      ..+   +-..+-++...||...|...+++....+|.-...
T Consensus       193 ~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s  232 (282)
T PF14938_consen  193 YSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS  232 (282)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS
T ss_pred             hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence            111   1111222334566666666666666666665554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.03  E-value=0.13  Score=50.69  Aligned_cols=161  Identities=20%  Similarity=0.127  Sum_probs=93.5

Q ss_pred             HHHHhhHhcCCHHHHHHHHhhCCCC-------ChHHHHHHHHHHHh---cCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516          459 SLVDMYAKNGDLRAAESIFSQVLHP-------DLKCWNALLGGYSH---YGMAEEAFMVFEVILEHGLRPDEITFLSLLS  528 (708)
Q Consensus       459 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  528 (708)
                      .++-.|....+++..+++.+.+...       ....-....-++-+   .|+.++|++++..+....-.++..+|..+.+
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            4444566667777777777766432       11222233445555   6777788887777555545566666665555


Q ss_pred             HHh----c-----cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCC-HH---HHHHHH---H-----h-CCCCCC
Q 038516          529 ACS----H-----SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGL-LD---EAENLI---A-----E-SPYSEI  586 (708)
Q Consensus       529 ~~~----~-----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~-----~-~~~~~~  586 (708)
                      .|-    .     ....++|...|.+.-+  +.|+..+=-.++..+...|. .+   +..++.   .     + ......
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~  303 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ  303 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence            432    1     2236677777776655  33543332233344444443 11   222222   1     1 111224


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516          587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      +...+.+++.++.-.||.++|.+.+++++.+.|..
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~  338 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA  338 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence            55566788889999999999999999999997764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.96  E-value=0.02  Score=46.50  Aligned_cols=90  Identities=20%  Similarity=0.155  Sum_probs=54.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC--cChHHHHHHHHHHH
Q 038516          491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHSGLVERGKILWNQMKEHSLI--PGHKHYSCMVSLLS  566 (708)
Q Consensus       491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~  566 (708)
                      +..++-..|+.++|+.+|++..+.|+....  ..+..+..++...|++++|..+++......-.  -+......+.-++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            345566677777788888877777665442  33555556677777777777777777653100  01222223445566


Q ss_pred             hcCCHHHHHHHHHh
Q 038516          567 RAGLLDEAENLIAE  580 (708)
Q Consensus       567 ~~g~~~~A~~~~~~  580 (708)
                      ..|+.++|.+.+-.
T Consensus        87 ~~gr~~eAl~~~l~  100 (120)
T PF12688_consen   87 NLGRPKEALEWLLE  100 (120)
T ss_pred             HCCCHHHHHHHHHH
Confidence            77777777766533

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.96  E-value=0.0061  Score=53.91  Aligned_cols=97  Identities=10%  Similarity=0.174  Sum_probs=71.9

Q ss_pred             HHHhhcC--CCCCcccHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccc------------
Q 038516           68 RQVFDEI--PKRSLVSYNALIAAYSRD-----HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLL------------  128 (708)
Q Consensus        68 ~~~~~~~--~~~~~~~~~~ll~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~------------  128 (708)
                      ...|+..  ..++-.+|..++..|.+.     |. .+-....+..|.+-|+.-|..+|+.||..+=+.            
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGH-VeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F  112 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGH-VEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEF  112 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcCh-HHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHh
Confidence            3455554  356667777777777654     44 666777788888888888888888888776432            


Q ss_pred             ----cchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCC
Q 038516          129 ----EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGD  165 (708)
Q Consensus       129 ----~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~  165 (708)
                          .+-+.|.+++++|...|+-||..++..|++.+.+.+.
T Consensus       113 ~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  113 MHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             ccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                2445678899999999999999999999988877654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.92  E-value=0.0084  Score=47.74  Aligned_cols=91  Identities=15%  Similarity=0.114  Sum_probs=72.6

Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHHHHHhcCC
Q 038516          563 SLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT----THILLSNLYAATGR  637 (708)
Q Consensus       563 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~  637 (708)
                      -++...|+++.|++.|.+. ..-|.++..|+.-..+++-.|+.++|..-+.+++++..+...    .|...+.+|...|+
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            4567888899999888876 223246788899999999999999999999999998655433    37788889999999


Q ss_pred             chHHHHHHHHHhcCCC
Q 038516          638 WDCVAKMRRKMKGSML  653 (708)
Q Consensus       638 ~~eA~~~~~~~~~~~~  653 (708)
                      .+.|+.-|+...+.|-
T Consensus       131 dd~AR~DFe~AA~LGS  146 (175)
T KOG4555|consen  131 DDAARADFEAAAQLGS  146 (175)
T ss_pred             hHHHHHhHHHHHHhCC
Confidence            9999999988876653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.90  E-value=0.011  Score=50.99  Aligned_cols=105  Identities=16%  Similarity=0.224  Sum_probs=70.8

Q ss_pred             hccCcHHHHHHHHHHhhHC--C-CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516          531 SHSGLVERGKILWNQMKEH--S-LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMV  607 (708)
Q Consensus       531 ~~~~~~~~a~~~~~~~~~~--~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  607 (708)
                      ...++.+.+...++++...  | +-|+...          ..........++..     -...+..++..+...|+++.|
T Consensus        17 ~~~~~~~~~~~~~~~al~ly~G~~l~~~~~----------~~W~~~~r~~l~~~-----~~~~~~~l~~~~~~~~~~~~a   81 (146)
T PF03704_consen   17 ARAGDPEEAIELLEEALALYRGDFLPDLDD----------EEWVEPERERLREL-----YLDALERLAEALLEAGDYEEA   81 (146)
T ss_dssp             HHTT-HHHHHHHHHHHHTT--SSTTGGGTT----------STTHHHHHHHHHHH-----HHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHhCCCCCCCCCc----------cHHHHHHHHHHHHH-----HHHHHHHHHHHHHhccCHHHH
Confidence            4456777777777777654  2 2222111          11222222233222     123556677778889999999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          608 IQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       608 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      ...+++++..+|-+...|..+..+|...|+..+|.++++++++
T Consensus        82 ~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   82 LRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988754

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK11906 transcriptional regulator; Provisional

Probab=96.90  E-value=0.018  Score=57.36  Aligned_cols=145  Identities=9%  Similarity=0.075  Sum_probs=92.4

Q ss_pred             ChHHHHHHHHHHHH-CCCCCCh-HHHHHHHHHHhc---------cCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHh
Q 038516          500 MAEEAFMVFEVILE-HGLRPDE-ITFLSLLSACSH---------SGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSR  567 (708)
Q Consensus       500 ~~~~A~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~  567 (708)
                      ..+.|+.+|.+... ..+.|+. ..|..+..++..         ..+..+|.+.-++..+  +.| |+.....++.++.-
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~  350 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGL  350 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHh
Confidence            45678888999882 2257764 344444433221         2345566666666665  333 45566667777777


Q ss_pred             cCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH-HHhcCCchHHHHHH
Q 038516          568 AGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNL-YAATGRWDCVAKMR  645 (708)
Q Consensus       568 ~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~eA~~~~  645 (708)
                      .|+++.|...|+++..-.| ....|......+.-.|+.++|.+.++++++++|....+-..-.++ .+-....++|++++
T Consensus       351 ~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (458)
T PRK11906        351 SGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY  430 (458)
T ss_pred             hcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence            7778888888888743334 466677777777778888888888888888888866554433333 33345567777766


Q ss_pred             H
Q 038516          646 R  646 (708)
Q Consensus       646 ~  646 (708)
                      -
T Consensus       431 ~  431 (458)
T PRK11906        431 Y  431 (458)
T ss_pred             h
Confidence            4

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.90  E-value=0.0015  Score=48.96  Aligned_cols=61  Identities=13%  Similarity=0.135  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CC---CCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRL----DP---EDGTTHILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      .++..+...+...|++++|+..+++++++    .+   .-..++..+|.+|...|++++|.+++++..
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            45666666777777777777777777653    12   224457788889999999999998888764

...

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.89  E-value=0.68  Score=47.79  Aligned_cols=410  Identities=11%  Similarity=0.077  Sum_probs=219.9

Q ss_pred             CcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchH-HHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHH
Q 038516          180 DAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSY-SMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALL  258 (708)
Q Consensus       180 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  258 (708)
                      +-..|+.+|..--+..+.+.+..++..++..  .|....| ......=.+.|..+.+.++|++.+.. ++.+...|...+
T Consensus        44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~  120 (577)
T KOG1258|consen   44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYL  120 (577)
T ss_pred             cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHH
Confidence            4455666666555555556666777777643  4554433 22333334677777888888877654 456666666665


Q ss_pred             Hhcc-cCCChHHHHHHHhccCC------CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHH---
Q 038516          259 DMYS-KCSDTQTAFSVFTRIEN------PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISAT---  328 (708)
Q Consensus       259 ~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~---  328 (708)
                      ..+. ..|+.+.....|+....      .+...|...|.--...+++.....+|++..+.    |. ..|+....-+   
T Consensus       121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~-~~~~~~f~~f~~~  195 (577)
T KOG1258|consen  121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PL-HQLNRHFDRFKQL  195 (577)
T ss_pred             HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hh-hHhHHHHHHHHHH
Confidence            5443 45677777777777654      35556777777777778888888888888765    11 1111111111   


Q ss_pred             cCC------CCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCC-ChhHHHHHhhcCCCCEeeehhhHHHHhcCCChH
Q 038516          329 SAL------PASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGD-AESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGE  401 (708)
Q Consensus       329 ~~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~  401 (708)
                      ...      ...+.+.++-......             ......++ .+......+....+              .+..+
T Consensus       196 l~~~~~~~l~~~d~~~~l~~~~~~~-------------~~~~~~~~~~e~~~~~v~~~~~~--------------s~~l~  248 (577)
T KOG1258|consen  196 LNQNEEKILLSIDELIQLRSDVAER-------------SKITHSQEPLEELEIGVKDSTDP--------------SKSLT  248 (577)
T ss_pred             HhcCChhhhcCHHHHHHHhhhHHhh-------------hhcccccChhHHHHHHHhhccCc--------------cchhh
Confidence            000      0111111111100000             00000000 00000000000000              01111


Q ss_pred             HHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh---CC----CCchhHHHHHHHhhHhcCCHHHHH
Q 038516          402 CAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKT---GH----GVEMSVCGSLVDMYAKNGDLRAAE  474 (708)
Q Consensus       402 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~----~~~~~~~~~l~~~~~~~g~~~~A~  474 (708)
                      ++...+.+....           --..+-...........++.-.+.   .+    +++...|...+....+.|+.+.+.
T Consensus       249 ~~~~~l~~~~~~-----------~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~  317 (577)
T KOG1258|consen  249 EEKTILKRIVSI-----------HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVF  317 (577)
T ss_pred             HHHHHHHHHHHH-----------HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHH
Confidence            111111111000           000001111111111122222221   11    224567777788888899999999


Q ss_pred             HHHhhCCCC---ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH-HHHHhccCcHHHHHHHHHHhhHCC
Q 038516          475 SIFSQVLHP---DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSL-LSACSHSGLVERGKILWNQMKEHS  550 (708)
Q Consensus       475 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~a~~~~~~~~~~~  550 (708)
                      -+|+...-|   -...|--.+.-....|+.+-|..++....+-- .|+......+ ..-+...|++..|..+++.+.+. 
T Consensus       318 ~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e-  395 (577)
T KOG1258|consen  318 ILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIH-VKKTPIIHLLEARFEESNGNFDDAKVILQRIESE-  395 (577)
T ss_pred             HHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc-CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh-
Confidence            999888643   23355555555556699998888888777653 3333332222 22455678999999999999885 


Q ss_pred             CCcCh-HHHHHHHHHHHhcCCHHHHH---HHHHhCCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516          551 LIPGH-KHYSCMVSLLSRAGLLDEAE---NLIAESPYSEIRIELWRTLLS-----TCVAKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       551 ~~p~~-~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      . |.. ..-..-+....+.|..+.+.   .++........+..+...+.-     .+...++.+.|..++.++.+..|++
T Consensus       396 ~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~  474 (577)
T KOG1258|consen  396 Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDC  474 (577)
T ss_pred             C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCcc
Confidence            3 543 22223456677889988888   555554211133333333322     2344789999999999999999999


Q ss_pred             cchHHHHHHHHHhcCCc
Q 038516          622 GTTHILLSNLYAATGRW  638 (708)
Q Consensus       622 ~~~~~~l~~~~~~~g~~  638 (708)
                      -..|..+.+....++..
T Consensus       475 k~~~~~~~~~~~~~~~~  491 (577)
T KOG1258|consen  475 KVLYLELIRFELIQPSG  491 (577)
T ss_pred             HHHHHHHHHHHHhCCcc
Confidence            99999998888777633

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.80  E-value=0.051  Score=49.31  Aligned_cols=125  Identities=18%  Similarity=0.096  Sum_probs=60.8

Q ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCC-----chhHHhHHHH
Q 038516           84 ALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSE-----DTCVQTSLLG  158 (708)
Q Consensus        84 ~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~-----~~~~~~~li~  158 (708)
                      ++++.+.-.+. +.-.++++.+..+...+.++.....+.+.-.+.||.+.|...++++.+..-..     +..+......
T Consensus       182 ~~~~~llG~kE-y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  182 SMANCLLGMKE-YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHhcchh-hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            44444444444 55555555555555444444455555555555566666666666554432222     2222233333


Q ss_pred             HhHhCCChhHHHHHhccCCC---CCcccHHHHHHHHhcCCChhHHHHHHHHHHh
Q 038516          159 MYSNCGDFESAKRIFGLIGD---KDAVAWNSIILGNFKNDKMKEGLSLFGAMVG  209 (708)
Q Consensus       159 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  209 (708)
                      .|.-.+++..|...+.+++.   .|...-|.-.-++.-.|+...|++.++.|.+
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~  314 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ  314 (366)
T ss_pred             heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34444555555555555443   2333333333333444555666666666555

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.79  E-value=0.017  Score=55.76  Aligned_cols=130  Identities=8%  Similarity=0.110  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh-cCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHH
Q 038516          521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR-AGLLDEAENLIAES-PYSEIRIELWRTLLSTC  598 (708)
Q Consensus       521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~  598 (708)
                      .+|..++..+.+.+..+.|..+|.+..+.+ ..+...|...+..-.. .++.+.|.++|+.+ ..-+.+...|...+..+
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            357788888888899999999999998542 2345556666666444 56666699999998 22225788999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          599 VAKRNSRMVIQAAEQVLRLDPEDG---TTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       599 ~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ...||.+.|..++++++..-|...   .+|......-.+.|+++.+.++.+++.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999998766655   57888888888999999999998877653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.76  E-value=0.022  Score=50.49  Aligned_cols=89  Identities=16%  Similarity=0.246  Sum_probs=71.6

Q ss_pred             CCChHHHHHHHHHHHh-----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc----------------CcHHHHH
Q 038516          482 HPDLKCWNALLGGYSH-----YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS----------------GLVERGK  540 (708)
Q Consensus       482 ~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----------------~~~~~a~  540 (708)
                      ..+-.+|..++..|.+     .|..+-....++.|.+-|+.-|..+|+.||..+=+.                .+.+-|+
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i  123 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI  123 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence            4566677777777654     467777788888999999999999999998877542                2457789


Q ss_pred             HHHHHhhHCCCCcChHHHHHHHHHHHhcCC
Q 038516          541 ILWNQMKEHSLIPGHKHYSCMVSLLSRAGL  570 (708)
Q Consensus       541 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  570 (708)
                      +++++|...|+.||.+++..+++.+++.+.
T Consensus       124 ~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  124 DLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            999999999999999999999999987764

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.74  E-value=0.15  Score=46.63  Aligned_cols=162  Identities=15%  Similarity=0.148  Sum_probs=90.4

Q ss_pred             HhhHhcCCHHHHHHHHhhCCC--C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhcc
Q 038516          462 DMYAKNGDLRAAESIFSQVLH--P----DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHS  533 (708)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~  533 (708)
                      ..+...|++++|.+.|+.+..  |    -....-.++.++.+.|+++.|...+++.++.  -|+.  ..+...+.+.+.-
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~   90 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYY   90 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHH
Confidence            344566777777777776641  2    1234455667777788888888888887774  4442  2223222222211


Q ss_pred             C-------------cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 038516          534 G-------------LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       534 ~-------------~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  600 (708)
                      .             ...+|...               +..++.-|-......+|...+..+...  -..---.++..|.+
T Consensus        91 ~~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~--la~~e~~ia~~Y~~  153 (203)
T PF13525_consen   91 KQIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR--LAEHELYIARFYYK  153 (203)
T ss_dssp             HHHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH--HHHHHHHHHHHHHC
T ss_pred             HhCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Confidence            1             11222222               333444444444555555554443211  01111224556888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHH
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDGTT---HILLSNLYAATGRWDCVA  642 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~eA~  642 (708)
                      .|.+..|..-++.+++.-|+....   ...++.+|.+.|..+.|.
T Consensus       154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            999999999999999999987654   567888899999988554

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.68  E-value=0.14  Score=46.53  Aligned_cols=138  Identities=8%  Similarity=-0.021  Sum_probs=96.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-----CCCcChHHHHHH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH-----SLIPGHKHYSCM  561 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~l  561 (708)
                      .-+.++..+.-.|.+.-.+..+.+.++..-+-+......|.+.-.+.||.+.|..+|++..+.     ++.-...+....
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            345566666667888888888998888643445666777778888899999999999977654     233333334444


Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516          562 VSLLSRAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT  624 (708)
Q Consensus       562 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  624 (708)
                      ...|.-++++.+|...+++.+...|. +...+.-.-+..-.|+...|++..+.+++..|.....
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~l~  322 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHYLH  322 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccchh
Confidence            55667778888898888888665443 3334444444445788899999999999999886543

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.64  E-value=0.029  Score=54.53  Aligned_cols=139  Identities=12%  Similarity=-0.026  Sum_probs=99.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516          492 LGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL  571 (708)
Q Consensus       492 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  571 (708)
                      ...|.+.|++..|..-|++.+..  -++           ...-+.++......        .-..++..|.-++.+.+++
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~--l~~-----------~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl~~~  273 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSF--LEY-----------RRSFDEEEQKKAEA--------LKLACHLNLAACYLKLKEY  273 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHH--hhc-----------cccCCHHHHHHHHH--------HHHHHhhHHHHHHHhhhhH
Confidence            45677778888888777776652  111           01111111111111        1134566788889999999


Q ss_pred             HHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH-HHHHHHHh
Q 038516          572 DEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCV-AKMRRKMK  649 (708)
Q Consensus       572 ~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA-~~~~~~~~  649 (708)
                      .+|+....+. ...+++...+-.-+.+|...|+++.|...|+++++++|+|-.+...|..+-.+...+.+. .+++..|-
T Consensus       274 ~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF  353 (397)
T KOG0543|consen  274 KEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYANMF  353 (397)
T ss_pred             HHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999998887 444467777777888999999999999999999999999999999888887777766665 67788775


Q ss_pred             cC
Q 038516          650 GS  651 (708)
Q Consensus       650 ~~  651 (708)
                      .+
T Consensus       354 ~k  355 (397)
T KOG0543|consen  354 AK  355 (397)
T ss_pred             hc
Confidence            43

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.63  E-value=0.46  Score=50.11  Aligned_cols=100  Identities=18%  Similarity=0.072  Sum_probs=45.2

Q ss_pred             HHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHH
Q 038516          393 GHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRA  472 (708)
Q Consensus       393 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  472 (708)
                      -+...|+..+|.++-.+.+    -||...|-.=+.+++..++|++-+++-+..      .++.-|..++.+|.+.|+.++
T Consensus       693 ~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAksk------ksPIGy~PFVe~c~~~~n~~E  762 (829)
T KOG2280|consen  693 TLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSK------KSPIGYLPFVEACLKQGNKDE  762 (829)
T ss_pred             HHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhcc------CCCCCchhHHHHHHhcccHHH
Confidence            3344444444444443332    344444444444444444444433332221      113334445555556666666


Q ss_pred             HHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHH
Q 038516          473 AESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMV  507 (708)
Q Consensus       473 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~  507 (708)
                      |.+.+.+...-.     -...+|.+.|++.+|.++
T Consensus       763 A~KYiprv~~l~-----ekv~ay~~~~~~~eAad~  792 (829)
T KOG2280|consen  763 AKKYIPRVGGLQ-----EKVKAYLRVGDVKEAADL  792 (829)
T ss_pred             HhhhhhccCChH-----HHHHHHHHhccHHHHHHH
Confidence            665554442211     334555555555555543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.61  E-value=0.12  Score=47.20  Aligned_cols=141  Identities=13%  Similarity=0.166  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcCh-HHHHH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD----EITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGH-KHYSC  560 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~-~~~~~  560 (708)
                      .+-.....+...|++.+|...|+++...  -|+    ......+..++.+.|+++.|...+++.++. .-.|.. ..+-.
T Consensus         7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    7 ALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            3334455666777788888888777765  222    123445556777777777777777776663 222221 11111


Q ss_pred             HHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch----------------
Q 038516          561 MVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT----------------  624 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~----------------  624 (708)
                      ++.++...  ...   .+                 ......+....|...++.+++.-|++.-.                
T Consensus        85 ~g~~~~~~--~~~---~~-----------------~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~  142 (203)
T PF13525_consen   85 LGLSYYKQ--IPG---IL-----------------RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAE  142 (203)
T ss_dssp             HHHHHHHH--HHH---HH------------------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHh--Ccc---ch-----------------hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHH
Confidence            11111111  000   00                 00112234456666667777777766544                


Q ss_pred             -HHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          625 -HILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       625 -~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                       -..+++.|.+.|++..|..-++.+.+.
T Consensus       143 ~e~~ia~~Y~~~~~y~aA~~r~~~v~~~  170 (203)
T PF13525_consen  143 HELYIARFYYKRGKYKAAIIRFQYVIEN  170 (203)
T ss_dssp             HHHHHHHHHHCTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence             336788899999999999999988764

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.60  E-value=0.004  Score=46.66  Aligned_cols=62  Identities=11%  Similarity=0.119  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038516          556 KHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRL  617 (708)
Q Consensus       556 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  617 (708)
                      .+++.++..|.+.|++++|++.++++       +...|. ..++..++..+...|++++|+..+++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34566666666666666666666554       111111 345666777777788888888887777654

...

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=96.59  E-value=0.39  Score=45.17  Aligned_cols=53  Identities=8%  Similarity=0.056  Sum_probs=30.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038516          561 MVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQ  613 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  613 (708)
                      +++.|.+.|.+..|..-++.+    |..+...+.+..+..+|...|..++|......
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            445566666665555444333    44434455566666666667776666665443

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.12  Score=48.50  Aligned_cols=103  Identities=14%  Similarity=0.085  Sum_probs=72.9

Q ss_pred             ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcC---CHHHHHHHHHhC-CCCCCCHHHHHH
Q 038516          519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAG---LLDEAENLIAES-PYSEIRIELWRT  593 (708)
Q Consensus       519 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~~~~~~~~~~  593 (708)
                      |...|..|...|...|+++.|..-|....+.  .| ++..+..+..++..+.   ...++..+++++ ..++.+......
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            5677877778888888888888888877763  22 3445555555554332   456788888887 333345666777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      |...+...|++.+|...++.+++..|.+..
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            777788888999999999988888877655

>PRK11906 transcriptional regulator; Provisional

Probab=96.52  E-value=0.32  Score=48.89  Aligned_cols=81  Identities=6%  Similarity=-0.111  Sum_probs=49.7

Q ss_pred             HHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          571 LDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       571 ~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      ..+|.++.+++ ...+.|+.....++.+....++.+.|...+++++.++|+.+.+|...++++.-.|+.++|.+.+++..
T Consensus       320 ~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~al  399 (458)
T PRK11906        320 AQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSL  399 (458)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            34555555554 22324555555555555556666777777777777777777767777777777777777766666654


Q ss_pred             cC
Q 038516          650 GS  651 (708)
Q Consensus       650 ~~  651 (708)
                      +.
T Consensus       400 rL  401 (458)
T PRK11906        400 QL  401 (458)
T ss_pred             cc
Confidence            43

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.51  E-value=0.73  Score=43.18  Aligned_cols=195  Identities=21%  Similarity=0.137  Sum_probs=138.5

Q ss_pred             hhHHHHHHHhhHhcCCHHHHHHHHhhCC-----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 038516          454 MSVCGSLVDMYAKNGDLRAAESIFSQVL-----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLS  528 (708)
Q Consensus       454 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  528 (708)
                      ..........+...+.+..+...+....     ......+......+...+++..+...+.........+ .........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence            4555666777777888888877776653     3445566667777777888888888888888753333 122222233


Q ss_pred             -HHhccCcHHHHHHHHHHhhHCCCCc----ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC--HHHHHHHHHHHHhc
Q 038516          529 -ACSHSGLVERGKILWNQMKEHSLIP----GHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR--IELWRTLLSTCVAK  601 (708)
Q Consensus       529 -~~~~~~~~~~a~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~  601 (708)
                       .+...|+++.|...+++...  ..|    ....+......+...++.++|...+.+.....+.  ...+..+...+...
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         138 GALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence             67888899999999888855  333    2334444445567788899999888887333233  56777788888888


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          602 RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       602 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++.+.|...+..++...|+....+..++..+...|.++++...+.+....
T Consensus       216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            89999999999999998886666777777777777788888888877654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.43  E-value=0.019  Score=55.30  Aligned_cols=153  Identities=16%  Similarity=0.062  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHH----HCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC----C-CCcChH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVIL----EHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEH----S-LIPGHK  556 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~----~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~p~~~  556 (708)
                      .|..|...|.-.|+++.|+..-+.-+    +-|-+. ....+..+..++.-.|+++.|.+.|+.....    | -.....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            34444455555566666655433221    111111 1233555666666667777777766654322    1 122334


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-----CC-Ccc
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD-----PE-DGT  623 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----p~-~~~  623 (708)
                      +..+|.+.|.-...+++|+.+..+-       .........+-+|..++...|+.++|..+.+..+++.     |. ..+
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelT  356 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELT  356 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhh
Confidence            4455677777777777777766442       1111234456667777777888888877777666532     22 223


Q ss_pred             hHHHHHHHHHhcCCch
Q 038516          624 THILLSNLYAATGRWD  639 (708)
Q Consensus       624 ~~~~l~~~~~~~g~~~  639 (708)
                      ....|.+.-...|.-+
T Consensus       357 ar~Nlsdl~~~lG~~d  372 (639)
T KOG1130|consen  357 ARDNLSDLILELGQED  372 (639)
T ss_pred             hhhhhHHHHHHhCCCc
Confidence            3455555555555443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.30  E-value=0.048  Score=50.40  Aligned_cols=91  Identities=15%  Similarity=0.107  Sum_probs=48.1

Q ss_pred             cCcHHHHHHHHHHhhHC--CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516          533 SGLVERGKILWNQMKEH--SLIPGHKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRM  606 (708)
Q Consensus       533 ~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~  606 (708)
                      .|++..|...|..-++.  +-.-....+..|+.++...|++++|...|..+    |..+--++.+-.|..+....|+.+.
T Consensus       154 sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~  233 (262)
T COG1729         154 SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDE  233 (262)
T ss_pred             cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHH
Confidence            34455555555555543  11112233334666666666666666555444    3332234555555555566666666


Q ss_pred             HHHHHHHHHhcCCCCcc
Q 038516          607 VIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       607 a~~~~~~~~~~~p~~~~  623 (708)
                      |...++++.+.-|+.+.
T Consensus       234 A~atl~qv~k~YP~t~a  250 (262)
T COG1729         234 ACATLQQVIKRYPGTDA  250 (262)
T ss_pred             HHHHHHHHHHHCCCCHH
Confidence            66666666666666554

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=96.22  E-value=1.5  Score=43.69  Aligned_cols=124  Identities=16%  Similarity=0.177  Sum_probs=80.6

Q ss_pred             HhcCC-HHHHHHHHhhCC---CCChHHHHHHH----HHHHh---cCChHHHHHHHHHHHHCCCCCCh----HHHHHHHH-
Q 038516          465 AKNGD-LRAAESIFSQVL---HPDLKCWNALL----GGYSH---YGMAEEAFMVFEVILEHGLRPDE----ITFLSLLS-  528 (708)
Q Consensus       465 ~~~g~-~~~A~~~~~~~~---~~~~~~~~~li----~~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~-  528 (708)
                      -+.|. -++|.++++.+.   .-|...-|.+.    .+|.+   ......-+.+-+-..+.|+.|-.    ..-|.|.. 
T Consensus       390 W~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDA  469 (549)
T PF07079_consen  390 WEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADA  469 (549)
T ss_pred             HhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHH
Confidence            34454 778888887774   33444433322    22222   22344445555555667877743    33344444 


Q ss_pred             -HHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHH
Q 038516          529 -ACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRT  593 (708)
Q Consensus       529 -~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  593 (708)
                       -+...|++.++.-+-..+.+  +.|++.+|..++-++....+++||..++.++|   |+...+++
T Consensus       470 EyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP---~n~~~~ds  530 (549)
T PF07079_consen  470 EYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP---PNERMRDS  530 (549)
T ss_pred             HHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC---CchhhHHH
Confidence             35667899998877777765  88999999999999999999999999999987   45555544

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.20  E-value=0.36  Score=39.00  Aligned_cols=141  Identities=9%  Similarity=0.032  Sum_probs=86.8

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHH
Q 038516          495 YSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       495 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  574 (708)
                      +.-.|..++..++..+....   .+..-+++++--....-+-+-..+.++.+-+-   -|          ...+|++...
T Consensus        12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FD----------is~C~NlKrV   75 (161)
T PF09205_consen   12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FD----------ISKCGNLKRV   75 (161)
T ss_dssp             HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-----------GGG-S-THHH
T ss_pred             HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------chhhcchHHH
Confidence            34468888888888888763   24555666665555555555556666655432   11          1234444444


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCc
Q 038516          575 ENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLG  654 (708)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  654 (708)
                      ...+-.+.   ...+..+..+.....+|+-+.-.+++..+..-+..+|.....++.+|.+.|+..+|-++++++.++|++
T Consensus        76 i~C~~~~n---~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   76 IECYAKRN---KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHTT------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            44444433   245566777778888999999999998888766667888999999999999999999999999988874

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.20  E-value=0.3  Score=46.74  Aligned_cols=192  Identities=13%  Similarity=0.065  Sum_probs=110.1

Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCC-------CC--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHC--CCCC-Ch-HH
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVL-------HP--DLKCWNALLGGYSHYGMAEEAFMVFEVILEH--GLRP-DE-IT  522 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p-~~-~~  522 (708)
                      ..-++..++.-.+.++++.+.|+...       .|  ....+..|...|.+..|+++|.-+..+..+.  .+.. |. .-
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            33445666666677777777776652       11  2346777888888888888888777766542  1221 11 11


Q ss_pred             HH-----HHHHHHhccCcHHHHHHHHHHhhHC----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCC
Q 038516          523 FL-----SLLSACSHSGLVERGKILWNQMKEH----SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-------PYSE  585 (708)
Q Consensus       523 ~~-----~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~  585 (708)
                      |.     .+.-++...|...+|.+..++..+.    |-.|. ......+.+.|...|+.|.|..-|+.+       ..+.
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrm  283 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRM  283 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhH
Confidence            22     2333677788888888887776553    44443 445667888888889888887777664       1111


Q ss_pred             CCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHhcCCCC----c--chHHHHHHHHHhcCCchHHHHHHHH
Q 038516          586 IRIELWRTLLSTCVAKRNS-----RMVIQAAEQVLRLDPED----G--TTHILLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~-----~~a~~~~~~~~~~~p~~----~--~~~~~l~~~~~~~g~~~eA~~~~~~  647 (708)
                      .....+...........-.     =.|+++-++++++-..-    .  ..+-.++.+|..+|.-++-..-+.+
T Consensus       284 gqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~r  356 (518)
T KOG1941|consen  284 GQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVR  356 (518)
T ss_pred             HHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence            1223333333332222111     23556656665543221    1  1245778888888877765544433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.16  E-value=0.87  Score=41.94  Aligned_cols=170  Identities=16%  Similarity=0.148  Sum_probs=92.5

Q ss_pred             HhcCCHHHHHHHHhhCCC--C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC--hHHHHHHHHHHhc----
Q 038516          465 AKNGDLRAAESIFSQVLH--P----DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD--EITFLSLLSACSH----  532 (708)
Q Consensus       465 ~~~g~~~~A~~~~~~~~~--~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~~~~~ll~~~~~----  532 (708)
                      .+.|++++|.+.|+.+..  |    ...+--.++.++.+.++++.|+..+++....  -|+  ...|...|.+++.    
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l--yP~~~n~dY~~YlkgLs~~~~i  122 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL--YPTHPNADYAYYLKGLSYFFQI  122 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCCCCChhHHHHHHHHHHhccC
Confidence            356777777777776631  1    2334455666777777777777777777764  332  2234444444432    


Q ss_pred             ---cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038516          533 ---SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQ  609 (708)
Q Consensus       533 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  609 (708)
                         ..|...+.+.+..+.+            ++.-|=...-..+|..-+..+...  -...=..++..|.+.|.+..|..
T Consensus       123 ~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~--LA~~Em~IaryY~kr~~~~AA~n  188 (254)
T COG4105         123 DDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA--LAGHEMAIARYYLKRGAYVAAIN  188 (254)
T ss_pred             CccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH--HHHHHHHHHHHHHHhcChHHHHH
Confidence               1122222222222221            111111111112222222111000  00011234456788999999999


Q ss_pred             HHHHHHhcCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          610 AAEQVLRLDPEDGTT---HILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       610 ~~~~~~~~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      -++++++--|+.+.+   +..+..+|...|..++|.+.-+-+..
T Consensus       189 R~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         189 RFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            999999887776554   55667789999999999888776643

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.93  E-value=0.022  Score=34.18  Aligned_cols=33  Identities=30%  Similarity=0.395  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516          589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      ..|..++..+...|++++|+..++++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            456667777778888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=1.2  Score=41.98  Aligned_cols=115  Identities=13%  Similarity=0.125  Sum_probs=50.0

Q ss_pred             ccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHH--HHHHHHHhcCCHHHHHH
Q 038516          532 HSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWR--TLLSTCVAKRNSRMVIQ  609 (708)
Q Consensus       532 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~  609 (708)
                      ..|++.+|...|+......- -+...--.|+.+|...|+.++|..++..+|....+.....  .-+..+.+..+..+...
T Consensus       146 ~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~  224 (304)
T COG3118         146 EAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD  224 (304)
T ss_pred             hccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence            34444444444444443210 0122333445555555555555555555544311111111  11111222222111111


Q ss_pred             HHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          610 AAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       610 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                       +++.+..+|+|...-..|+..|...|+.++|.+.+-.+
T Consensus       225 -l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~  262 (304)
T COG3118         225 -LQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLAL  262 (304)
T ss_pred             -HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence             23334556666666666666666666666666554433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.91  E-value=0.074  Score=45.67  Aligned_cols=70  Identities=19%  Similarity=0.260  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-----CCCcChHHH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEH-----SLIPGHKHY  558 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~  558 (708)
                      ....++..+...|++++|..+++++...  .| |...+..++.++...|+...|.+.|+.+.+.     |+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~--dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALAL--DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            3445566677778888888888888874  44 5667888888888888888888887776532     777776553

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.84  E-value=0.018  Score=34.60  Aligned_cols=33  Identities=18%  Similarity=0.309  Sum_probs=26.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516          589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      .+|..++..+...|++++|+..++++++++|++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~   34 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence            467778888888888888888888888888863

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.75  E-value=0.43  Score=44.69  Aligned_cols=177  Identities=18%  Similarity=0.123  Sum_probs=122.8

Q ss_pred             HHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCC
Q 038516          471 RAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHS  550 (708)
Q Consensus       471 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  550 (708)
                      +...++++....+....--.-.......|++.+|..+|....+.. .-+......+..+|...|+++.|..++..+-...
T Consensus       120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~  198 (304)
T COG3118         120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQA  198 (304)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence            355666676665533333334456778899999999999999862 2244566778889999999999999999876542


Q ss_pred             CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcchHHHH
Q 038516          551 LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD--PEDGTTHILL  628 (708)
Q Consensus       551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l  628 (708)
                      -.........-+..+.+.....+...+..+....+.|...--.+...+...|+.+.|...+-.++..+  -++..+...|
T Consensus       199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l  278 (304)
T COG3118         199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL  278 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            22222223344566777777777777777776563477777888888999999999998888777754  4456667788


Q ss_pred             HHHHHhcCCchHH-HHHHHHH
Q 038516          629 SNLYAATGRWDCV-AKMRRKM  648 (708)
Q Consensus       629 ~~~~~~~g~~~eA-~~~~~~~  648 (708)
                      ..++.-.|.-+.+ ...++++
T Consensus       279 le~f~~~g~~Dp~~~~~RRkL  299 (304)
T COG3118         279 LELFEAFGPADPLVLAYRRKL  299 (304)
T ss_pred             HHHHHhcCCCCHHHHHHHHHH
Confidence            8888777755544 3344443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.73  E-value=0.096  Score=48.46  Aligned_cols=95  Identities=16%  Similarity=0.089  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHH
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED---GTTHILLS  629 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~  629 (708)
                      .|+.- ..+...|++.+|...|...    |...-.+..+-.|+.++...|+++.|...|..+.+-.|++   +..+.-|+
T Consensus       144 ~Y~~A-~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAA-LDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHH-HHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            45543 3455788899999888775    4333345566778899999999999999999999876655   46688999


Q ss_pred             HHHHhcCCchHHHHHHHHHhcCC
Q 038516          630 NLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       630 ~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      .+..+.|+.++|..+++++.++-
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~Y  245 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRY  245 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHC
Confidence            99999999999999999987753

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.68  E-value=3.7  Score=43.77  Aligned_cols=135  Identities=9%  Similarity=-0.029  Sum_probs=66.0

Q ss_pred             CCCCCCcchHHH-----HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCC---ChHHHHHHHhccCC--
Q 038516          210 SGVNPTQFSYSM-----LLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCS---DTQTAFSVFTRIEN--  279 (708)
Q Consensus       210 ~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~--  279 (708)
                      -|+..+..-|..     +|+-+...+.+..|.++-..+...-..- ..++.....-+.+..   +.+-+..+-+++..  
T Consensus       426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~  504 (829)
T KOG2280|consen  426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL  504 (829)
T ss_pred             cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence            355555544443     3445555566666666555443211111 344544555444442   23334444444444  


Q ss_pred             CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCC---CCCHhHHHHHHHHHcCCCCccchHHHHHHHH
Q 038516          280 PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLL---KPDEYTFAAIISATSALPASAYGKPLHALVI  345 (708)
Q Consensus       280 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~---~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~  345 (708)
                      .+..+|..+.+-....|+.+-|..+++.=...+..   -.+..-+...+.-+...|+.+....++-.+.
T Consensus       505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk  573 (829)
T KOG2280|consen  505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK  573 (829)
T ss_pred             CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence            34556777776666778888777776532211000   0111223444455556666666555554443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.65  E-value=0.067  Score=53.43  Aligned_cols=63  Identities=8%  Similarity=-0.032  Sum_probs=40.7

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-I---ELWRTLLSTCVAKRNSRMVIQAAEQVLRL  617 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  617 (708)
                      ...+..++.+|...|++++|+..++++....|+ .   ..|..+..+|...|+.++|+..+++++++
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666667777777777777777665222243 2   23666777777777777777777777776

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=95.45  E-value=2.2  Score=39.75  Aligned_cols=200  Identities=19%  Similarity=0.088  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHh-CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CCh-HHHHHHHH-
Q 038516          419 NFALSGALSACADLAILKQGEMIHSQAEKT-GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PDL-KCWNALLG-  493 (708)
Q Consensus       419 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~-  493 (708)
                      ...+......+...+.+..+...+...... ........+......+...+++..+.+.+.....  ++. ........ 
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  138 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALG  138 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHH
Confidence            344444555555666666666655555442 2334455555666677777778888888877653  222 22333333 


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCC----ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcC
Q 038516          494 GYSHYGMAEEAFMVFEVILEHGLRP----DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAG  569 (708)
Q Consensus       494 ~~~~~g~~~~A~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  569 (708)
                      .+...|+++.|...+.+...  ..|    ....+......+...++.+.+...+..............+..+...+...+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         139 ALYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcc
Confidence            78899999999999999966  344    233344444456778899999999999987321113667788888999999


Q ss_pred             CHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          570 LLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       570 ~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      ++++|...+.......|+ ...+..+...+...++.+.+...+.+.....|.
T Consensus       217 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         217 KYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             cHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            999999999888443344 455555655655777899999999999999997

>PRK11619 lytic murein transglycosylase; Provisional

Probab=95.20  E-value=6  Score=43.23  Aligned_cols=117  Identities=10%  Similarity=0.007  Sum_probs=67.0

Q ss_pred             cCChHHHHHHHHHHHHCC-CCCChH--HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHH
Q 038516          498 YGMAEEAFMVFEVILEHG-LRPDEI--TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       498 ~g~~~~A~~~~~~m~~~g-~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  574 (708)
                      ..+.+.|..++.+..... +.+...  ....+.......+...++...++......  .+......-+....+.++++.+
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~  331 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL  331 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence            456788888888775442 322222  22333333333322456666666544321  2344455555666688888888


Q ss_pred             HHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516          575 ENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLR  616 (708)
Q Consensus       575 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  616 (708)
                      ...+..|+.... .....--++.++...|+.++|...|+++..
T Consensus       332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            888888854311 223333345555668888888888888743

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.14  E-value=0.83  Score=43.88  Aligned_cols=198  Identities=13%  Similarity=0.019  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHH--hCCCCc---hhHHHHHHHhhHhcCCHHHHHHHHhhCC-----CC---ChH
Q 038516          420 FALSGALSACADLAILKQGEMIHSQAEK--TGHGVE---MSVCGSLVDMYAKNGDLRAAESIFSQVL-----HP---DLK  486 (708)
Q Consensus       420 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~~  486 (708)
                      .++..+..+.+..|.++++...---...  .....+   ...|..+..++.+.-++.+++.+-..-.     .+   .-.
T Consensus        44 ~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq  123 (518)
T KOG1941|consen   44 RVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQ  123 (518)
T ss_pred             HHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccch
Confidence            3455555566666666655443211111  111111   1223344445555555555555444321     11   112


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---C--ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcChHH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLR---P--DEITFLSLLSACSHSGLVERGKILWNQMKEH----SLIPGHKH  557 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~  557 (708)
                      ...++..++.-.+.++++++.|+....---.   |  ....+..|-..|....|+++|..+..+..+.    ++..-..-
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            3344667777788899999999988763211   1  1245778888888999999998887776543    32221222


Q ss_pred             -----HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038516          558 -----YSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL  617 (708)
Q Consensus       558 -----~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  617 (708)
                           ...|.-+|...|.+-+|.+.-+++       .........+..+...|+..||.+.|..-|+++...
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence                 223556677788887777777665       333223455777888899999999999999988754

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.11  E-value=0.74  Score=46.47  Aligned_cols=146  Identities=13%  Similarity=0.043  Sum_probs=86.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHH--Hhc
Q 038516          491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLL--SRA  568 (708)
Q Consensus       491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~--~~~  568 (708)
                      +|.-.-+..++..-++.-+++++  +.||-.+...++ +-..+....++.+++++..+.|-    ..   +....  ...
T Consensus       174 IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~---lg~s~~~~~~  243 (539)
T PF04184_consen  174 IMQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----AS---LGKSQFLQHH  243 (539)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hh---hchhhhhhcc
Confidence            34444556677777777788777  567655433333 23345567888888888776421    00   00000  011


Q ss_pred             CCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCchHHHHHHH
Q 038516          569 GLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE--DGTTHILLSNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       569 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~eA~~~~~  646 (708)
                      |..-   +.+.+ ....+-..+-..+..++++.|+.++|++.++++++..|.  +-.++..|...+...+.+.|+..++.
T Consensus       244 g~~~---e~~~~-Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~  319 (539)
T PF04184_consen  244 GHFW---EAWHR-RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLA  319 (539)
T ss_pred             cchh---hhhhc-cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence            1110   11111 111123344455667778888888888888888877665  34567788888888888888888887


Q ss_pred             HHhc
Q 038516          647 KMKG  650 (708)
Q Consensus       647 ~~~~  650 (708)
                      +--+
T Consensus       320 kYdD  323 (539)
T PF04184_consen  320 KYDD  323 (539)
T ss_pred             Hhcc
Confidence            6543

The molecular function of this protein is uncertain.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=95.10  E-value=0.047  Score=35.19  Aligned_cols=29  Identities=17%  Similarity=0.263  Sum_probs=26.5

Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          623 TTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ..+..++.+|...|++++|+++++++.+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999999875

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=95.02  E-value=1.8  Score=38.48  Aligned_cols=177  Identities=17%  Similarity=0.103  Sum_probs=100.1

Q ss_pred             cCCHHHHHHHHhhCC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHH
Q 038516          467 NGDLRAAESIFSQVL--HPD-LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKIL  542 (708)
Q Consensus       467 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~  542 (708)
                      .|-+.-|+--|.+..  .|+ +..||-+.--+...|+++.|.+.|+...+.  .|. ..++..-.-++.-.|++.-|.+-
T Consensus        78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d  155 (297)
T COG4785          78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDD  155 (297)
T ss_pred             hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHH
Confidence            344444444444432  343 557787877788888999999998888884  443 22222222245557888888777


Q ss_pred             HHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHH-HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          543 WNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLI-AESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       543 ~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      +...-+. .-.|-...|   +..-.+.-+..+|..-+ ++...  .+.+.|...+-.+.- |++ .-+.+++++.+...+
T Consensus       156 ~~~fYQ~D~~DPfR~LW---LYl~E~k~dP~~A~tnL~qR~~~--~d~e~WG~~iV~~yL-gki-S~e~l~~~~~a~a~~  228 (297)
T COG4785         156 LLAFYQDDPNDPFRSLW---LYLNEQKLDPKQAKTNLKQRAEK--SDKEQWGWNIVEFYL-GKI-SEETLMERLKADATD  228 (297)
T ss_pred             HHHHHhcCCCChHHHHH---HHHHHhhCCHHHHHHHHHHHHHh--ccHhhhhHHHHHHHH-hhc-cHHHHHHHHHhhccc
Confidence            6666554 222322222   12223344666776543 44432  355556554443322 111 012223333333333


Q ss_pred             C-------cchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          621 D-------GTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       621 ~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      +       ..+|..|+.-|...|+.++|..+|+.....+
T Consensus       229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            3       2358899999999999999999999876643

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.96  E-value=3.1  Score=46.76  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=94.2

Q ss_pred             CCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH----HHHHHHHhccCcHHHHHHHH
Q 038516          468 GDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITF----LSLLSACSHSGLVERGKILW  543 (708)
Q Consensus       468 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~  543 (708)
                      +++++|+.-+..+-   ...|.-.+.---++|-+.+|+.+        +.|+...+    .+...-|...+.+++|.-+|
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~l--------y~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Y  962 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALAL--------YKPDSEKQKVIYEAYADHLREELMSDEAALMY  962 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhe--------eccCHHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence            55666666555543   11223333333455555555555        45665544    44445566677888887777


Q ss_pred             HHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          544 NQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELW---RTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       544 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      +..-+         ..--+.+|..+|+|.+|+.+-.++...  ...+.   ..|...+...++.-+|-.+..+...-   
T Consensus       963 e~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~--~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--- 1028 (1265)
T KOG1920|consen  963 ERCGK---------LEKALKAYKECGDWREALSLAAQLSEG--KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--- 1028 (1265)
T ss_pred             HHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC--HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---
Confidence            76543         223457788899999999998887543  22222   56667788888877777766654421   


Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          621 DGTTHILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       621 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                          ...-..+|.+...|++|.++.....
T Consensus      1029 ----~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 ----PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             ----HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence                2334557788889999998876554

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.91  E-value=1.3  Score=46.40  Aligned_cols=55  Identities=13%  Similarity=0.012  Sum_probs=26.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH-HHHHHHHhcCCc-------hHHHHHHHHH
Q 038516          594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI-LLSNLYAATGRW-------DCVAKMRRKM  648 (708)
Q Consensus       594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~-------~eA~~~~~~~  648 (708)
                      +++.+....++++|...+.++.+.+.-+...|. ..+-+|...|+.       ++|.+++++.
T Consensus       311 l~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v  373 (468)
T PF10300_consen  311 LAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV  373 (468)
T ss_pred             HHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence            344444455555555555555554443333333 223344445555       5555555544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.87  E-value=0.75  Score=43.65  Aligned_cols=154  Identities=12%  Similarity=0.112  Sum_probs=89.0

Q ss_pred             cCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHH----HHHHhccCcHHHH
Q 038516          467 NGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSL----LSACSHSGLVERG  539 (708)
Q Consensus       467 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l----l~~~~~~~~~~~a  539 (708)
                      .|+..+|...+++++   +.|...+.-.=.+|...|+...-...+++..-. ..||...|..+    .-++...|-+++|
T Consensus       116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA  194 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA  194 (491)
T ss_pred             cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence            466666666666664   346666776677777788877777777777654 35555443332    2245567777777


Q ss_pred             HHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 038516          540 KILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRI------ELWRTLLSTCVAKRNSRMVIQAAE  612 (708)
Q Consensus       540 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~  612 (708)
                      .+.-++..+  +.| |.=.-.++...+.-.|+..|+.+++.+-...=...      ..|.. .-.+...+.++.|+.+|+
T Consensus       195 Ek~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  195 EKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             HHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccchhHHHHHHH
Confidence            777776665  333 23334456667777778888888776653220010      01111 112334567777777776


Q ss_pred             HHH--hcCCCCcch
Q 038516          613 QVL--RLDPEDGTT  624 (708)
Q Consensus       613 ~~~--~~~p~~~~~  624 (708)
                      +-+  +++.+++..
T Consensus       272 ~ei~k~l~k~Da~a  285 (491)
T KOG2610|consen  272 REIWKRLEKDDAVA  285 (491)
T ss_pred             HHHHHHhhccchhh
Confidence            543  344455443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=94.85  E-value=0.1  Score=49.29  Aligned_cols=94  Identities=12%  Similarity=0.074  Sum_probs=50.2

Q ss_pred             HHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCCHHHHHHHHHHHHhcCCHH
Q 038516          528 SACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESPYS-EIRIELWRTLLSTCVAKRNSR  605 (708)
Q Consensus       528 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  605 (708)
                      .-|.+.|.+++|+..|...+.  ..| +..++..-+.+|.+..++..|+.-...+... ..-...|..-+.+-...|+..
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~  182 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM  182 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence            345666666666666666554  444 4555555555666666666555544443211 011222333344444456666


Q ss_pred             HHHHHHHHHHhcCCCCcc
Q 038516          606 MVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       606 ~a~~~~~~~~~~~p~~~~  623 (708)
                      +|.+-++.+++++|++..
T Consensus       183 EAKkD~E~vL~LEP~~~E  200 (536)
T KOG4648|consen  183 EAKKDCETVLALEPKNIE  200 (536)
T ss_pred             HHHHhHHHHHhhCcccHH
Confidence            666666666666666433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.81  E-value=2.7  Score=38.85  Aligned_cols=140  Identities=15%  Similarity=0.118  Sum_probs=83.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCC-CC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHH
Q 038516          488 WNALLGGYSHYGMAEEAFMVFEVILEHGL-RP-DEITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSL  564 (708)
Q Consensus       488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~  564 (708)
                      |-.-+..-.+.|++++|.+.|+.+..+-. .| ...+...++.++-+.+++++|+...++.... +-.|+.. |...+.+
T Consensus        37 LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~Ylkg  115 (254)
T COG4105          37 LYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKG  115 (254)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHH
Confidence            33334556677888888888888886521 11 2345666666788888888888888888775 4445533 3334444


Q ss_pred             HHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----------------HHH
Q 038516          565 LSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT-----------------HIL  627 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------------~~~  627 (708)
                      +.          .+...+...-|.             .-...|...++.+++.-|++.-+                 -..
T Consensus       116 Ls----------~~~~i~~~~rDq-------------~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~  172 (254)
T COG4105         116 LS----------YFFQIDDVTRDQ-------------SAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMA  172 (254)
T ss_pred             HH----------HhccCCccccCH-------------HHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence            43          111111110011             11223344444555555554322                 236


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcC
Q 038516          628 LSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       628 l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +++.|.+.|.|-.|..-++.|.+.
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~  196 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLEN  196 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc
Confidence            788999999999999999988775

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.74  E-value=1.9  Score=43.71  Aligned_cols=101  Identities=9%  Similarity=0.086  Sum_probs=69.3

Q ss_pred             HHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCC-CCCH--HHHHHHHHHHH
Q 038516          524 LSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYS-EIRI--ELWRTLLSTCV  599 (708)
Q Consensus       524 ~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~--~~~~~l~~~~~  599 (708)
                      ..+..++.+.|+.++|++.+++|.+. ...........|+..|...+.+.++..++.+.... .|..  ..|...+--.+
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            34555677889999999999999864 22223456777899999999999999999887422 1332  33544443333


Q ss_pred             hcCC---------------HHHHHHHHHHHHhcCCCCcch
Q 038516          600 AKRN---------------SRMVIQAAEQVLRLDPEDGTT  624 (708)
Q Consensus       600 ~~~~---------------~~~a~~~~~~~~~~~p~~~~~  624 (708)
                      ..+|               ...|.+++.++++.+|.-+..
T Consensus       343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~Y  382 (539)
T PF04184_consen  343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKY  382 (539)
T ss_pred             hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchh
Confidence            3332               234678899999999987764

The molecular function of this protein is uncertain.

>PRK15331 chaperone protein SicA; Provisional

Probab=94.73  E-value=0.8  Score=39.15  Aligned_cols=89  Identities=9%  Similarity=-0.063  Sum_probs=50.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516          493 GGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL  571 (708)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  571 (708)
                      .-+...|++++|..+|+-+...  .| |..-+..|..+|-..+++++|...|......+. -|+..+-..+.+|...|+.
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~--d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIY--DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence            3445667777777777776663  33 333344444455556677777777766654321 1222233355667777777


Q ss_pred             HHHHHHHHhCCCC
Q 038516          572 DEAENLIAESPYS  584 (708)
Q Consensus       572 ~~A~~~~~~~~~~  584 (708)
                      +.|+..|+.....
T Consensus       122 ~~A~~~f~~a~~~  134 (165)
T PRK15331        122 AKARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHHhC
Confidence            7777776665433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.71  E-value=0.35  Score=45.77  Aligned_cols=160  Identities=11%  Similarity=0.004  Sum_probs=112.8

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh----HHHHHHHHHHHhcCCH
Q 038516          496 SHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH----KHYSCMVSLLSRAGLL  571 (708)
Q Consensus       496 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~  571 (708)
                      .-.|+..+|-..|+++++. .+.|...+...=.+|.-.|+...-...++++... ..|+.    ..-..+..++..+|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            3568889999999999986 4557777887888999999999888888888764 23343    3334456677899999


Q ss_pred             HHHHHHHHhCCCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHhcCCchHHHHHH
Q 038516          572 DEAENLIAESPYSEIRIELWRT--LLSTCVAKRNSRMVIQAAEQVLRLDPED----GTTHILLSNLYAATGRWDCVAKMR  645 (708)
Q Consensus       572 ~~A~~~~~~~~~~~~~~~~~~~--l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~eA~~~~  645 (708)
                      ++|++.-++.... .....|..  +...+...|+..++.++.++--..-...    .--|-+.+-.|.+.+.++.|.+++
T Consensus       192 ~dAEk~A~ralqi-N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQI-NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccC-CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            9999999998555 33445554  4444566889999988877543221111    111446677788889999999999


Q ss_pred             HHHhcCCCccCCc
Q 038516          646 RKMKGSMLGKEPG  658 (708)
Q Consensus       646 ~~~~~~~~~~~~~  658 (708)
                      +.-.-..+.+..+
T Consensus       271 D~ei~k~l~k~Da  283 (491)
T KOG2610|consen  271 DREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHhhccch
Confidence            8754444555554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.68  E-value=2.3  Score=42.97  Aligned_cols=151  Identities=11%  Similarity=0.028  Sum_probs=82.9

Q ss_pred             CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC--hHH
Q 038516          483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP---DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG--HKH  557 (708)
Q Consensus       483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~  557 (708)
                      ....+|..++..+.+.|+++.|...+.++...+..+   .......-...+-..|+..+|...++...+......  ...
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~  223 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcccccc
Confidence            445678888888888888888888888887743222   222333344555667788888888877776311111  111


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAK------RNSRMVIQAAEQVLRLDPEDGTTHILLSNL  631 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  631 (708)
                      ...+...+..  ..+.....-........-..++..+...+...      ++.+.+...|+++.+++|.....|..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111111000  00000000000000000122233333333334      788999999999999999999988888877


Q ss_pred             HHhc
Q 038516          632 YAAT  635 (708)
Q Consensus       632 ~~~~  635 (708)
                      +.+.
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            6553

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.66  E-value=2.1  Score=36.23  Aligned_cols=125  Identities=12%  Similarity=0.080  Sum_probs=65.4

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc
Q 038516          489 NALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA  568 (708)
Q Consensus       489 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  568 (708)
                      ..++..+.+.+.+.....+++.+...+ ..+...++.++..|++.+ ..+.++.++.      .++.......+..+.+.
T Consensus        11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~   82 (140)
T smart00299       11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKA   82 (140)
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHc
Confidence            345555555666677777777766654 234555666666666543 2333344332      11222233355666666


Q ss_pred             CCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          569 GLLDEAENLIAESPYSEIRIELWRTLLSTCVAK-RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       569 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      +.++++.-++.+++..   ..    .+..+..+ ++.+.|.+++.+     ++++..|..++..+.
T Consensus        83 ~l~~~~~~l~~k~~~~---~~----Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l  136 (140)
T smart00299       83 KLYEEAVELYKKDGNF---KD----AIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL  136 (140)
T ss_pred             CcHHHHHHHHHhhcCH---HH----HHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            6677777777665422   11    22222223 667777776664     234455665555443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.61  E-value=0.1  Score=41.78  Aligned_cols=57  Identities=12%  Similarity=-0.029  Sum_probs=52.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      .-+....|+++.|++.|.+++.+-|..+++|+..+.+|.-+|+.++|.+-+++..+.
T Consensus        50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL  106 (175)
T KOG4555|consen   50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL  106 (175)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence            345678999999999999999999999999999999999999999999999988764

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=94.58  E-value=5.5  Score=39.78  Aligned_cols=77  Identities=9%  Similarity=0.115  Sum_probs=57.3

Q ss_pred             CCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcc---cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHH
Q 038516           46 QSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLV---SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLA  122 (708)
Q Consensus        46 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  122 (708)
                      -++.+|-.||.-|...|..++.++++++|..|-+.   +|..-|.+=....+ +.....+|.+-....+  +...|..-|
T Consensus        40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~d-f~svE~lf~rCL~k~l--~ldLW~lYl  116 (660)
T COG5107          40 TNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKD-FRSVESLFGRCLKKSL--NLDLWMLYL  116 (660)
T ss_pred             hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhh-HHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence            57889999999999999999999999999877543   57777776665667 8888888888776544  344444444


Q ss_pred             HHh
Q 038516          123 QAV  125 (708)
Q Consensus       123 ~~~  125 (708)
                      .-.
T Consensus       117 ~YI  119 (660)
T COG5107         117 EYI  119 (660)
T ss_pred             HHH
Confidence            433

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.58  E-value=1.9  Score=36.48  Aligned_cols=121  Identities=15%  Similarity=0.273  Sum_probs=67.9

Q ss_pred             HHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcH
Q 038516          460 LVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLV  536 (708)
Q Consensus       460 l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  536 (708)
                      ++..+...+.......+++.+..   .+....+.++..|++.+ ..+.+..++.      .++......++..|.+.+.+
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~   85 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKLY   85 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCcH
Confidence            33334444444444444444421   23345555555555442 2333344332      22344455577778888888


Q ss_pred             HHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc-CCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 038516          537 ERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA-GLLDEAENLIAESPYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       537 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  600 (708)
                      +++..++.++..         +...+..+... ++.+.|.+++.+.    .++..|..++..+..
T Consensus        86 ~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~----~~~~lw~~~~~~~l~  137 (140)
T smart00299       86 EEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ----NNPELWAEVLKALLD  137 (140)
T ss_pred             HHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC----CCHHHHHHHHHHHHc
Confidence            888888777643         33334444444 7888888888763    366788888776653

>PRK10941 hypothetical protein; Provisional

Probab=94.51  E-value=0.27  Score=46.55  Aligned_cols=83  Identities=17%  Similarity=0.182  Sum_probs=70.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEE
Q 038516          591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHV  670 (708)
Q Consensus       591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  670 (708)
                      .+.+-.++.+.++++.|.++.+.++.+.|+++.-+.-.|-+|.+.|.+..|..-++...++.+.                
T Consensus       184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~----------------  247 (269)
T PRK10941        184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE----------------  247 (269)
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC----------------
Confidence            4556667889999999999999999999999999999999999999999999988877665432                


Q ss_pred             EEeCCCCCcchHHHHHHHHHHHHHHH
Q 038516          671 FSSGDQSHPKIDDAQAELHRLRGNMR  696 (708)
Q Consensus       671 ~~~~~~~~~~~~~~~~~l~~l~~~~~  696 (708)
                             -|.++.|...++.|+++..
T Consensus       248 -------dp~a~~ik~ql~~l~~~~~  266 (269)
T PRK10941        248 -------DPISEMIRAQIHSIEQKQI  266 (269)
T ss_pred             -------chhHHHHHHHHHHHhhcCc
Confidence                   5788888888888877653

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.51  E-value=1.4  Score=46.21  Aligned_cols=157  Identities=15%  Similarity=0.124  Sum_probs=97.9

Q ss_pred             HHHHhhHhcCCHHHHHHHHhhCCC-CC---------hHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHH
Q 038516          459 SLVDMYAKNGDLRAAESIFSQVLH-PD---------LKCWNALLGGYSH----YGMAEEAFMVFEVILEHGLRPDEITFL  524 (708)
Q Consensus       459 ~l~~~~~~~g~~~~A~~~~~~~~~-~~---------~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~  524 (708)
                      .++...+=.|+-+.+.+.+....+ ++         ...|+..+..++.    ..+.+.|.++++.+.+.  -|+...|.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl  270 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL  270 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence            344444444555555555544321 11         1234444444433    34677889999999885  78877765


Q ss_pred             HHHH-HHhccCcHHHHHHHHHHhhHC-CCCc--ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CCHHHHHHHHHHH-
Q 038516          525 SLLS-ACSHSGLVERGKILWNQMKEH-SLIP--GHKHYSCMVSLLSRAGLLDEAENLIAESPYSE-IRIELWRTLLSTC-  598 (708)
Q Consensus       525 ~ll~-~~~~~~~~~~a~~~~~~~~~~-~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~-  598 (708)
                      ..-. .+...|+.++|++.|++.... .--|  ....+.-++..+.-.++|++|.+.+.++.... -+..+|..+..+| 
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~  350 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL  350 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            5544 667789999999999976642 1111  23345557778888999999999998884432 2355566665554 


Q ss_pred             HhcCCH-------HHHHHHHHHHHhc
Q 038516          599 VAKRNS-------RMVIQAAEQVLRL  617 (708)
Q Consensus       599 ~~~~~~-------~~a~~~~~~~~~~  617 (708)
                      ...++.       ++|...+.++-.+
T Consensus       351 ~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  351 LMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HhhccchhhhhhHHHHHHHHHHHHHH
Confidence            347777       7777777766544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.44  E-value=0.42  Score=39.33  Aligned_cols=99  Identities=14%  Similarity=0.070  Sum_probs=69.8

Q ss_pred             CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhc--cCCCChhHHHHHHHHH
Q 038516          215 TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTR--IENPDLVSWNSMIAGY  292 (708)
Q Consensus       215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~  292 (708)
                      |..++..+|.++++.|+++....+++..=  |+.++...         ..+.       +..  -..|+..+..+++.+|
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~W--gI~~~~~~---------~~~~-------~~~~spl~Pt~~lL~AIv~sf   62 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVW--GIDVNGKK---------KEGD-------YPPSSPLYPTSRLLIAIVHSF   62 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhc--CCCCCCcc---------ccCc-------cCCCCCCCCCHHHHHHHHHHH
Confidence            45678889999999999888777775432  33322110         0001       111  1128888999999999


Q ss_pred             HcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCC
Q 038516          293 MENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSAL  331 (708)
Q Consensus       293 ~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~  331 (708)
                      +.+|++..|+++++...+.-+++.+..+|..|+.-+...
T Consensus        63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            999999999999999888877888888888888765443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=94.40  E-value=1.6  Score=36.49  Aligned_cols=116  Identities=18%  Similarity=0.084  Sum_probs=67.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHH
Q 038516          490 ALLGGYSHYGMAEEAFMVFEVILEHGLRPD---EITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLL  565 (708)
Q Consensus       490 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~  565 (708)
                      .-.....+.|++.+|.+.|+.+..+ .+..   ...-..++.++.+.+++++|...+++.++. .-.|+ ..|.....++
T Consensus        15 ~~a~~~l~~~~Y~~A~~~le~L~~r-yP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL   92 (142)
T PF13512_consen   15 QEAQEALQKGNYEEAIKQLEALDTR-YPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGL   92 (142)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhc-CCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHH
Confidence            3344556678888888888888775 2222   234556777888888888888888888774 22222 2344344444


Q ss_pred             HhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          566 SRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       566 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      ..-...+   ..+..+...             =+..+....|...++++++.-|++.-
T Consensus        93 ~~~~~~~---~~~~~~~~~-------------drD~~~~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen   93 SYYEQDE---GSLQSFFRS-------------DRDPTPARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHhh---hHHhhhccc-------------ccCcHHHHHHHHHHHHHHHHCcCChh
Confidence            3322222   222222100             01123456888889999999998754

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.36  E-value=1.9  Score=37.81  Aligned_cols=94  Identities=11%  Similarity=-0.030  Sum_probs=60.3

Q ss_pred             HHHhccCcHHHHHHHHHHhhHCCCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHH
Q 038516          528 SACSHSGLVERGKILWNQMKEHSLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSR  605 (708)
Q Consensus       528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  605 (708)
                      ..+...+++++|..-++........-+  ...--.|.......|.+++|+..++......-.+.....-+..+...||-+
T Consensus        97 k~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~  176 (207)
T COG2976          97 KAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQ  176 (207)
T ss_pred             HHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchH
Confidence            356777888888877776664211111  111223567788888999999988776433112333344455677888888


Q ss_pred             HHHHHHHHHHhcCCCC
Q 038516          606 MVIQAAEQVLRLDPED  621 (708)
Q Consensus       606 ~a~~~~~~~~~~~p~~  621 (708)
                      +|...|+++++.+++.
T Consensus       177 ~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         177 EARAAYEKALESDASP  192 (207)
T ss_pred             HHHHHHHHHHHccCCh
Confidence            8998888888887543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.36  E-value=0.58  Score=38.51  Aligned_cols=50  Identities=26%  Similarity=0.347  Sum_probs=30.6

Q ss_pred             CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHh
Q 038516          550 SLIPGHKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       550 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~  600 (708)
                      .+.|+..+..+++.+|+..|++..|+++++..    +.. .+...|..|+.-+..
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~-i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIP-IPKEFWRRLLEWAYV  100 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH
Confidence            45566666666777776667777776666554    322 346667666655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=94.28  E-value=0.31  Score=44.91  Aligned_cols=111  Identities=14%  Similarity=0.148  Sum_probs=83.1

Q ss_pred             HHHHHhhcCC--CCCcccHHHHHHHHHhC-----CCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhcccc---------
Q 038516           66 DARQVFDEIP--KRSLVSYNALIAAYSRD-----HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLE---------  129 (708)
Q Consensus        66 ~A~~~~~~~~--~~~~~~~~~ll~~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---------  129 (708)
                      -....|...+  ++|-.+|-+.+..|...     +. .+-....++.|.+.|+.-|..+|+.||..+-+..         
T Consensus        52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~H-veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~  130 (406)
T KOG3941|consen   52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTH-VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQK  130 (406)
T ss_pred             chhhhhhccCcccccHHHHHHHHHHHHHhhhcccch-HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHH
Confidence            3445666666  67777888888777653     34 7777888999999999999999999998875432         


Q ss_pred             -------chHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCC-hhHHHHHhccCC
Q 038516          130 -------DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGD-FESAKRIFGLIG  177 (708)
Q Consensus       130 -------~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~-~~~A~~~~~~~~  177 (708)
                             .-..+..++++|...|+-||..+-..|++++.+.+- ..+..++.-.|+
T Consensus       131 ~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  131 VFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                   234467889999999999999999999999988765 334444444444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.19  E-value=2.7  Score=41.76  Aligned_cols=72  Identities=18%  Similarity=0.094  Sum_probs=43.1

Q ss_pred             HHHHHHHhcCCChhHHHHHhhcCCC---C----EeeehhhHHHHhc---CCChHHHHHHHHHHhHCCCccCHHHHHHHHH
Q 038516          358 TLLNMYFKNGDAESPQKVFMLIAEK---D----IVLWTEMIIGHSR---MGDGECAIKLFCKMCREGLKCDNFALSGALS  427 (708)
Q Consensus       358 ~li~~~~~~g~~~~A~~~~~~~~~~---~----~~~~~~li~~~~~---~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~  427 (708)
                      .++-+|....+++...++.+.+...   +    ...-.....++.+   .|+.++|+.++..+......+++.||..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444466666666666666665543   1    1111123445555   7888888888888666666777777766555


Q ss_pred             HH
Q 038516          428 AC  429 (708)
Q Consensus       428 ~~  429 (708)
                      .|
T Consensus       226 Iy  227 (374)
T PF13281_consen  226 IY  227 (374)
T ss_pred             HH
Confidence            44

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.10  E-value=4.5  Score=36.89  Aligned_cols=86  Identities=13%  Similarity=0.115  Sum_probs=44.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc----CCCCcchH
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAES-------PYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRL----DPEDGTTH  625 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~~~~~~  625 (708)
                      +..+.+.|.+..+++||-..+.+-       ... ++ -..+...+-.+....|+..|+..++.--+.    .|++....
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y-~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l  231 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAY-NSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL  231 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhc-ccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence            444456666666666666555443       111 11 112333333344455777777776664432    35555556


Q ss_pred             HHHHHHHHhcCCchHHHHHH
Q 038516          626 ILLSNLYAATGRWDCVAKMR  645 (708)
Q Consensus       626 ~~l~~~~~~~g~~~eA~~~~  645 (708)
                      ..|...| ..|+.+++..+.
T Consensus       232 enLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  232 ENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHh-ccCCHHHHHHHH
Confidence            6666544 456666665543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.00  E-value=3.1  Score=44.93  Aligned_cols=141  Identities=14%  Similarity=0.076  Sum_probs=73.5

Q ss_pred             HHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHH
Q 038516          460 LVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERG  539 (708)
Q Consensus       460 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  539 (708)
                      ..+.+.+.|++++|...|-+.+.--..  ..+|.-|....+..+-..+++.+.+.|+. +...-..|+.+|.+.++.++-
T Consensus       374 Ygd~Ly~Kgdf~~A~~qYI~tI~~le~--s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL  450 (933)
T KOG2114|consen  374 YGDYLYGKGDFDEATDQYIETIGFLEP--SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKL  450 (933)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHcccCCh--HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHH
Confidence            334445667777776666544321101  12345555555566666667777776644 333344566677777777666


Q ss_pred             HHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516          540 KILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAE  612 (708)
Q Consensus       540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  612 (708)
                      .++.+.-- .|.--  .-....+..+.+.+-+++|..+-.+...   ...++..+   +...+|+++|.++++
T Consensus       451 ~efI~~~~-~g~~~--fd~e~al~Ilr~snyl~~a~~LA~k~~~---he~vl~il---le~~~ny~eAl~yi~  514 (933)
T KOG2114|consen  451 TEFISKCD-KGEWF--FDVETALEILRKSNYLDEAELLATKFKK---HEWVLDIL---LEDLHNYEEALRYIS  514 (933)
T ss_pred             HHHHhcCC-Cccee--eeHHHHHHHHHHhChHHHHHHHHHHhcc---CHHHHHHH---HHHhcCHHHHHHHHh
Confidence            66555443 12110  0123344556666666666666555432   12222222   344567777777665

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=93.91  E-value=0.71  Score=42.70  Aligned_cols=98  Identities=16%  Similarity=0.208  Sum_probs=76.5

Q ss_pred             HHHHhhCC--CCChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC------------
Q 038516          474 ESIFSQVL--HPDLKCWNALLGGYSHY-----GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSG------------  534 (708)
Q Consensus       474 ~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------------  534 (708)
                      +..|....  +.|-.+|...+..+...     +.++-....++.|.+-|+.-|..+|+.|+..+=+..            
T Consensus        54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~  133 (406)
T KOG3941|consen   54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL  133 (406)
T ss_pred             hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence            34455554  46677777777776543     566777778899999999999999999998775533            


Q ss_pred             ----cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516          535 ----LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL  571 (708)
Q Consensus       535 ----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  571 (708)
                          +-+-++.++++|...|+.||.++-..|++++++.|-.
T Consensus       134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence                3356789999999999999999999999999988853

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.89  E-value=0.12  Score=30.90  Aligned_cols=31  Identities=16%  Similarity=0.216  Sum_probs=22.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      +|..+...+...|+.++|...++++++++|+
T Consensus         3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            4566666777777777777777777777774

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.80  E-value=1.5  Score=45.14  Aligned_cols=159  Identities=16%  Similarity=0.088  Sum_probs=91.9

Q ss_pred             HHhcCCChHHHHHHHH-HHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHH
Q 038516          393 GHSRMGDGECAIKLFC-KMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLR  471 (708)
Q Consensus       393 ~~~~~~~~~~A~~~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  471 (708)
                      ...-.++++++.++.+ .-.-..++  ......++.-+.+.|..+.|.++...-.            .-.+...++|+++
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~  335 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLD  335 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HH
T ss_pred             HHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHH
Confidence            3445677777666654 11111111  3335566666777777777777644321            1224456788888


Q ss_pred             HHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCC
Q 038516          472 AAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSL  551 (708)
Q Consensus       472 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  551 (708)
                      .|.++.++..  +...|..|.....+.|+++-|.+.|++..+         |..|+-.|...|+.+.-.++.+.....|.
T Consensus       336 ~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~  404 (443)
T PF04053_consen  336 IALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD  404 (443)
T ss_dssp             HHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            8888876654  666888888888888888888888877543         44555566677777777777666665442


Q ss_pred             CcChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038516          552 IPGHKHYSCMVSLLSRAGLLDEAENLIAESP  582 (708)
Q Consensus       552 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  582 (708)
                            ++....++.-.|+.++..+++.+..
T Consensus       405 ------~n~af~~~~~lgd~~~cv~lL~~~~  429 (443)
T PF04053_consen  405 ------INIAFQAALLLGDVEECVDLLIETG  429 (443)
T ss_dssp             ------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence                  3333444555677777777666653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.78  E-value=2.2  Score=36.33  Aligned_cols=110  Identities=16%  Similarity=0.121  Sum_probs=61.9

Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCcChHHH-HHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIPGHKHY-SCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA-KRNSRM  606 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~  606 (708)
                      .-...++.+++..++..+.-  +.|..... ..-+..+.+.|+|.+|..+++++....|....-..|+..|.. .||.+ 
T Consensus        19 ~al~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~-   95 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPS-   95 (160)
T ss_pred             HHHccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChH-
Confidence            34456677777777777765  45542222 223455778888888888888886554555555556655554 34332 


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 038516          607 VIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAK  643 (708)
Q Consensus       607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~  643 (708)
                      =....+++++..|+. . -..|+..+........|..
T Consensus        96 Wr~~A~evle~~~d~-~-a~~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   96 WRRYADEVLESGADP-D-ARALVRALLARADLEPAHE  130 (160)
T ss_pred             HHHHHHHHHhcCCCh-H-HHHHHHHHHHhccccchhh
Confidence            233345555555432 2 2344445555444444443

>PRK09687 putative lyase; Provisional

Probab=93.75  E-value=6.9  Score=37.76  Aligned_cols=132  Identities=9%  Similarity=-0.042  Sum_probs=53.1

Q ss_pred             chhHHHHHHHhhHhcCCHHHHHHHHhhC-CCCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 038516          453 EMSVCGSLVDMYAKNGDLRAAESIFSQV-LHPDLKCWNALLGGYSHYG-MAEEAFMVFEVILEHGLRPDEITFLSLLSAC  530 (708)
Q Consensus       453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  530 (708)
                      +..+-...+.++++.|+.+ |...+-.+ ..+|...-...+.++.+.+ +...+...+..+..   .+|...-...+.++
T Consensus       141 ~~~VR~~a~~aLg~~~~~~-ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aL  216 (280)
T PRK09687        141 STNVRFAVAFALSVINDEA-AIPLLINLLKDPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGL  216 (280)
T ss_pred             CHHHHHHHHHHHhccCCHH-HHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHH
Confidence            3334444445555555432 33333222 2344333333333443332 12344444444443   33444444455555


Q ss_pred             hccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHH
Q 038516          531 SHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLL  595 (708)
Q Consensus       531 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~  595 (708)
                      .+.++ ..+...+-...+.+.     .....+.++...|.. +|...+..+....+|..+-....
T Consensus       217 g~~~~-~~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d~~v~~~a~  274 (280)
T PRK09687        217 ALRKD-KRVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKFDDNEIITKAI  274 (280)
T ss_pred             HccCC-hhHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCChhHHHHHH
Confidence            55554 234443333333211     112334444444442 44444444432223444433333

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=93.52  E-value=0.13  Score=31.27  Aligned_cols=26  Identities=12%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          624 THILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       624 ~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      +|..|+.+|.+.|+|++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            36789999999999999999998854

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=93.44  E-value=0.54  Score=39.17  Aligned_cols=53  Identities=17%  Similarity=0.181  Sum_probs=39.6

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      ..++.+.++.++..+.-+.|+.+..-..-++++...|+|+||.++++.+.+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence            36777777777777777777777777777777777788888877777776544

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.33  E-value=0.74  Score=39.17  Aligned_cols=71  Identities=18%  Similarity=0.035  Sum_probs=32.3

Q ss_pred             hcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516          567 RAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR  637 (708)
Q Consensus       567 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  637 (708)
                      +.++.+++..+++.+..-.|. +..-..-.+.+...|++.+|.++++.+.+-.|..+..-..++.++...|+
T Consensus        22 ~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D   93 (160)
T PF09613_consen   22 RLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGD   93 (160)
T ss_pred             ccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCC
Confidence            444555555555554211122 22222223334455555555555555555555555444445544444444

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.14  E-value=4  Score=33.24  Aligned_cols=65  Identities=11%  Similarity=0.100  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLI  552 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  552 (708)
                      .....+......|+-++-.+++.++.+.+ +|++....-+..+|.+.|+..++.+++.++-+.|++
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            34455667777788888777877776533 667777777777888888888888888887776653

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=93.01  E-value=11  Score=37.84  Aligned_cols=124  Identities=10%  Similarity=0.032  Sum_probs=69.0

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCC-CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHh
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHS-LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIEL-WRTLLSTCVA  600 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~  600 (708)
                      |..++..-.+..-++.|..+|-++.+.| +.+++..+++++.-+ ..|+..-|..+|+-.....||... ....+..+..
T Consensus       400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~  478 (660)
T COG5107         400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIR  478 (660)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            4555555555566677777777777665 445666666666544 356666677776654222233333 3334444555


Q ss_pred             cCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHHHHHHH
Q 038516          601 KRNSRMVIQAAEQVLRLDPED--GTTHILLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~eA~~~~~~  647 (708)
                      .+|-+.|..+|+..++.-.+.  ..+|..+..--..-|+.+.|..+-++
T Consensus       479 inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~r  527 (660)
T COG5107         479 INDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEER  527 (660)
T ss_pred             hCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHH
Confidence            666677777777555432222  34455555555555666555444333

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.00  E-value=17  Score=40.04  Aligned_cols=42  Identities=10%  Similarity=0.102  Sum_probs=19.8

Q ss_pred             hhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHH
Q 038516          197 MKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVI  243 (708)
Q Consensus       197 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  243 (708)
                      .+++-++|+.-..  ...+..+.+.+   |.+..-|-.|.++..-..
T Consensus       196 ~eE~~~fl~~~~~--l~Ld~~~~~~L---~~~teGW~~al~L~aLa~  237 (894)
T COG2909         196 TEEAAAFLNDRGS--LPLDAADLKAL---YDRTEGWAAALQLIALAL  237 (894)
T ss_pred             hHHHHHHHHHcCC--CCCChHHHHHH---HhhcccHHHHHHHHHHHc
Confidence            4566666655432  34455444433   234444555555544433

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.84  E-value=21  Score=40.69  Aligned_cols=156  Identities=16%  Similarity=0.126  Sum_probs=80.8

Q ss_pred             CChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHH
Q 038516          265 SDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALV  344 (708)
Q Consensus       265 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  344 (708)
                      +++++|+.-+..+.   ...|...+..--+.|.+.+|+.++         .|+...+..+..+|+.            .+
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly---------~~~~e~~k~i~~~ya~------------hL  949 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY---------KPDSEKQKVIYEAYAD------------HL  949 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee---------ccCHHHHHHHHHHHHH------------HH
Confidence            56677776666655   334455555556778888888766         5777776666554431            11


Q ss_pred             HHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHH--H
Q 038516          345 IKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFA--L  422 (708)
Q Consensus       345 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t--~  422 (708)
                      .+..      .+.-..-+|.++|..++|.+.                  |...|+|.+|+.+-.++...   -|...  -
T Consensus       950 ~~~~------~~~~Aal~Ye~~GklekAl~a------------------~~~~~dWr~~l~~a~ql~~~---~de~~~~a 1002 (1265)
T KOG1920|consen  950 REEL------MSDEAALMYERCGKLEKALKA------------------YKECGDWREALSLAAQLSEG---KDELVILA 1002 (1265)
T ss_pred             HHhc------cccHHHHHHHHhccHHHHHHH------------------HHHhccHHHHHHHHHhhcCC---HHHHHHHH
Confidence            1111      112233456777777777554                  45567788877777665321   11111  1


Q ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhh
Q 038516          423 SGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQ  479 (708)
Q Consensus       423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  479 (708)
                      ..+..-+...++.-+|-++..+....        ...-+..|++...+++|..+-..
T Consensus      1003 ~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred             HHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHh
Confidence            23344444445444444444332211        11223445555556666655443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=92.79  E-value=0.31  Score=46.16  Aligned_cols=80  Identities=16%  Similarity=0.091  Sum_probs=59.2

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc--
Q 038516          492 LGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA--  568 (708)
Q Consensus       492 i~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--  568 (708)
                      ...|.+.|.+++|+..|.+.+.  +.| |.+++..-..+|.+...+..|..-....+..+        ...+.+|.|.  
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~Y~KAYSRR~~  173 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KLYVKAYSRRMQ  173 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HHHHHHHHHHHH
Confidence            4579999999999999999888  477 88999888999999999998887777665421        1234556555  


Q ss_pred             -----CCHHHHHHHHHhC
Q 038516          569 -----GLLDEAENLIAES  581 (708)
Q Consensus       569 -----g~~~~A~~~~~~~  581 (708)
                           |+..||.+-++..
T Consensus       174 AR~~Lg~~~EAKkD~E~v  191 (536)
T KOG4648|consen  174 ARESLGNNMEAKKDCETV  191 (536)
T ss_pred             HHHHHhhHHHHHHhHHHH
Confidence                 4555555555544

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=92.51  E-value=15  Score=38.35  Aligned_cols=123  Identities=11%  Similarity=-0.023  Sum_probs=79.3

Q ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH-H
Q 038516          520 EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS-T  597 (708)
Q Consensus       520 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~-~  597 (708)
                      ..+|...+.--...|+.+...-+|++..-- ..-=...|--.+.-....|+.+-|..++... ...-+.......+-. .
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            456777777778888888888888877531 1111344555566666678888888777665 111122222222222 3


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 038516          598 CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAK  643 (708)
Q Consensus       598 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~  643 (708)
                      +...||.+.|..+++++.+--|+....-..-+......|+.+.+.-
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~  421 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNLEDANY  421 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcchhhhhH
Confidence            4557899999999998887658766655555666777888888773

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.47  E-value=2.4  Score=38.63  Aligned_cols=23  Identities=9%  Similarity=-0.133  Sum_probs=13.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH
Q 038516          491 LLGGYSHYGMAEEAFMVFEVILE  513 (708)
Q Consensus       491 li~~~~~~g~~~~A~~~~~~m~~  513 (708)
                      -..+|...+++++|...+.+..+
T Consensus        37 AAvafRnAk~feKakdcLlkA~~   59 (308)
T KOG1585|consen   37 AAVAFRNAKKFEKAKDCLLKASK   59 (308)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHH
Confidence            34455556666666666655553

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.40  E-value=0.034  Score=47.59  Aligned_cols=85  Identities=12%  Similarity=0.106  Sum_probs=63.5

Q ss_pred             HHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhH
Q 038516          120 SLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKE  199 (708)
Q Consensus       120 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  199 (708)
                      .+++.+.+.+.+.....+++.+...+...+....+.++..|++.++.+...++++....   .-...++..|.+.|.+++
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence            35677777888888889999999887777889999999999999888888888884332   334556677777777777


Q ss_pred             HHHHHHHH
Q 038516          200 GLSLFGAM  207 (708)
Q Consensus       200 A~~~~~~m  207 (708)
                      |.-++.++
T Consensus        89 a~~Ly~~~   96 (143)
T PF00637_consen   89 AVYLYSKL   96 (143)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHHc
Confidence            77766654

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.16  E-value=4  Score=37.16  Aligned_cols=91  Identities=14%  Similarity=-0.009  Sum_probs=68.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC---------CCCCCCHHH-----------HHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516          560 CMVSLLSRAGLLDEAENLIAES---------PYSEIRIEL-----------WRTLLSTCVAKRNSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       560 ~l~~~~~~~g~~~~A~~~~~~~---------~~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  619 (708)
                      .=++-+.+.|++.||..-|.++         ..+ |...-           +.....++...|++-++++....++..+|
T Consensus       183 q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEk-P~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~  261 (329)
T KOG0545|consen  183 QEGNRLFKLGRYKEASSKYREAIICLRNLQLKEK-PGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHP  261 (329)
T ss_pred             HhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccC-CCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCC
Confidence            3445677778888777766654         233 33222           22333445568999999999999999999


Q ss_pred             CCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          620 EDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       620 ~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +|..+|...+.+....=+.+||..-|.+..+.
T Consensus       262 ~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l  293 (329)
T KOG0545|consen  262 GNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL  293 (329)
T ss_pred             chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence            99999999999999998999999988888764

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=92.12  E-value=3.1  Score=42.97  Aligned_cols=153  Identities=10%  Similarity=0.054  Sum_probs=77.9

Q ss_pred             HhcCCHHHHHHHHh--hCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHH
Q 038516          465 AKNGDLRAAESIFS--QVL-HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKI  541 (708)
Q Consensus       465 ~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  541 (708)
                      .-.|+++++.++..  ++. .-...-.+.++.-+.+.|-++.|+.+.+         |..+   -.....+.|+.+.|.+
T Consensus       272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~~---rFeLAl~lg~L~~A~~  339 (443)
T PF04053_consen  272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVT---------DPDH---RFELALQLGNLDIALE  339 (443)
T ss_dssp             HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HHH---HHHHHHHCT-HHHHHH
T ss_pred             HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChHH---HhHHHHhcCCHHHHHH
Confidence            34566777554443  221 1123345666666667777777776522         2221   1223345677777665


Q ss_pred             HHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516          542 LWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       542 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      +.+..      ++...|..|++...++|+++-|++.+++...       +..|+-.|...|+.+.-.++.+.+....-  
T Consensus       340 ~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d-------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~--  404 (443)
T PF04053_consen  340 IAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD-------FSGLLLLYSSTGDREKLSKLAKIAEERGD--  404 (443)
T ss_dssp             HCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT--------HHHHHHHHHHCT-HHHHHHHHHHHHHTT---
T ss_pred             HHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC-------ccccHHHHHHhCCHHHHHHHHHHHHHccC--
Confidence            54322      3456677777777777777777777777642       34455556666776666665555443322  


Q ss_pred             cchHHHHHHHHHhcCCchHHHHHHHH
Q 038516          622 GTTHILLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       622 ~~~~~~l~~~~~~~g~~~eA~~~~~~  647 (708)
                         +.....++.-.|+.++..+++..
T Consensus       405 ---~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  405 ---INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             ---HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             ---HHHHHHHHHHcCCHHHHHHHHHH
Confidence               23333445555777777666653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=92.12  E-value=0.13  Score=48.89  Aligned_cols=93  Identities=12%  Similarity=0.127  Sum_probs=77.5

Q ss_pred             HhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH
Q 038516          566 SRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKM  644 (708)
Q Consensus       566 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~  644 (708)
                      ...|.+++|.+.+.+. +..++...++..-..++.+.++...|++-+..+++++|+.+.-|-.-+.+...+|+|++|...
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d  204 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD  204 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence            3577789999998887 334345566666777788899999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCccCCc
Q 038516          645 RRKMKGSMLGKEPG  658 (708)
Q Consensus       645 ~~~~~~~~~~~~~~  658 (708)
                      ++...+.+.....+
T Consensus       205 l~~a~kld~dE~~~  218 (377)
T KOG1308|consen  205 LALACKLDYDEANS  218 (377)
T ss_pred             HHHHHhccccHHHH
Confidence            99998887754443

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=92.09  E-value=0.19  Score=29.98  Aligned_cols=29  Identities=14%  Similarity=0.148  Sum_probs=24.8

Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          623 TTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ..+..+|.+|...|++++|++.+++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            46889999999999999999999988664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.77  E-value=0.33  Score=29.53  Aligned_cols=27  Identities=22%  Similarity=0.140  Sum_probs=19.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 038516          591 WRTLLSTCVAKRNSRMVIQAAEQVLRL  617 (708)
Q Consensus       591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~  617 (708)
                      |..|+..|...|++++|+.++++++.+
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            567777888888888888888885543

>PRK09687 putative lyase; Provisional

Probab=91.25  E-value=15  Score=35.50  Aligned_cols=75  Identities=11%  Similarity=0.051  Sum_probs=36.0

Q ss_pred             CCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHH
Q 038516          350 DSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSAC  429 (708)
Q Consensus       350 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~  429 (708)
                      .++..+....+.++.+.|+......+.+.+..++  .....+.++...|.. +|...+..+.+.  .||...-...+.+|
T Consensus       203 D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        203 DKNEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             CCChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            3444555555555555555332223333333222  223455566666664 566666666653  23554444444444

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.10  E-value=3.3  Score=35.51  Aligned_cols=122  Identities=11%  Similarity=0.096  Sum_probs=75.4

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChH-HHHH--HHHHHHhcCC
Q 038516          495 YSHYGMAEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHK-HYSC--MVSLLSRAGL  570 (708)
Q Consensus       495 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~--l~~~~~~~g~  570 (708)
                      +++.+..++|+.-|..+.+.|...-.+. ..-......+.|+...|...|+++-.....|... -..-  -..++...|-
T Consensus        68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs  147 (221)
T COG4649          68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS  147 (221)
T ss_pred             HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence            3556777888888888887765422211 1122234667788888888888887654334322 1111  1345667888


Q ss_pred             HHHHHHHHHhCCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516          571 LDEAENLIAESPYS--EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR  616 (708)
Q Consensus       571 ~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  616 (708)
                      +++...-++-+...  +.....-..|.-+-.+.|++..|...|+++..
T Consensus       148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            88888777776322  12334455566666778888888888887776

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.03  E-value=2.2  Score=40.48  Aligned_cols=72  Identities=21%  Similarity=0.281  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-----CCCcChHHHHH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEH-----SLIPGHKHYSC  560 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~  560 (708)
                      ++..++..+...|+++.+...++++...  .| |...|..++.+|.+.|+...|+..|+.+.+.     |+.|...+...
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            3444555555555566666666666553  33 4555666666666666666666655555441     55665554443

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=91.02  E-value=1.8  Score=38.01  Aligned_cols=71  Identities=8%  Similarity=0.020  Sum_probs=39.7

Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516          562 VSLLSRAGLLDEAENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY  632 (708)
Q Consensus       562 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  632 (708)
                      +.++.+.+.++.|.+-..++-...|. ...+..-..+|.+...++.|+.-|+++++++|....+.....++-
T Consensus       141 aaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~  212 (271)
T KOG4234|consen  141 AAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLP  212 (271)
T ss_pred             HHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcC
Confidence            34455555566555555444222122 222223334566667778888888888888887766555554443

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=90.87  E-value=3.6  Score=33.65  Aligned_cols=31  Identities=10%  Similarity=0.145  Sum_probs=15.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516          591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      .-.|.-++.+.++++++.++.+.+++.+|+|
T Consensus        74 lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n  104 (149)
T KOG3364|consen   74 LYYLAVGHYRLKEYSKSLRYVDALLETEPNN  104 (149)
T ss_pred             hhhhHHHHHHHhhHHHHHHHHHHHHhhCCCc
Confidence            3334444555555555555555555555554

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=90.85  E-value=0.32  Score=26.91  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=19.8

Q ss_pred             chHHHHHHHHHhcCCchHHHHHHH
Q 038516          623 TTHILLSNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       623 ~~~~~l~~~~~~~g~~~eA~~~~~  646 (708)
                      .....|+.++...|++++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            356788899999999999988775

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=90.79  E-value=29  Score=38.10  Aligned_cols=80  Identities=15%  Similarity=0.222  Sum_probs=42.4

Q ss_pred             CChhHHHHHhccCCC-------CCcccHHHHHHH--HhcCCChhHHHHHHHHHHhCCC---------CCCcchHHHHHHH
Q 038516          164 GDFESAKRIFGLIGD-------KDAVAWNSIILG--NFKNDKMKEGLSLFGAMVGSGV---------NPTQFSYSMLLNA  225 (708)
Q Consensus       164 g~~~~A~~~~~~~~~-------~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~---------~p~~~~~~~ll~~  225 (708)
                      ++...|.+.++.+..       +...++-.++.+  +.+.+..+++++.++.+.....         .|-...|..+++.
T Consensus       153 ~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l  232 (608)
T PF10345_consen  153 KDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDL  232 (608)
T ss_pred             ccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHH
Confidence            566666666654432       112223333333  2345666777777776633211         2344556666666


Q ss_pred             Hh--ccCChhHHHHHHHHHH
Q 038516          226 CS--RMGNFVCGKVIHARVI  243 (708)
Q Consensus       226 ~~--~~~~~~~a~~~~~~~~  243 (708)
                      ++  ..|+++.+...+.++.
T Consensus       233 ~~~l~~~~~~~~~~~L~~lq  252 (608)
T PF10345_consen  233 CCSLQQGDVKNSKQKLKQLQ  252 (608)
T ss_pred             HHHHHcCCHHHHHHHHHHHH
Confidence            54  5667667666655554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.74  E-value=17  Score=35.21  Aligned_cols=60  Identities=15%  Similarity=0.044  Sum_probs=28.1

Q ss_pred             HHHHHHHHHhCcccHH---HHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC
Q 038516          421 ALSGALSACADLAILK---QGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL  481 (708)
Q Consensus       421 t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  481 (708)
                      ++..+..++...+..+   ++..+++.+.... +..+.++-.-+..+.+.++.+.+.+.+.+|+
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi  148 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMI  148 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHH
Confidence            4445555555544433   3333444443221 2223333333444445666666666666664

It is also involved in sporulation [].

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=90.65  E-value=1.3  Score=29.70  Aligned_cols=48  Identities=13%  Similarity=0.075  Sum_probs=36.2

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhh
Q 038516          625 HILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKL  698 (708)
Q Consensus       625 ~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~  698 (708)
                      +..++-.+.+.|+|++|.+..+.+.+.                          .|++.+.......+..+|.+.
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kd   51 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKD   51 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhcc
Confidence            567788899999999999999998764                          677777777777777776653

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=90.56  E-value=13  Score=36.03  Aligned_cols=141  Identities=17%  Similarity=0.195  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHhHCCCccCHHHHHHHHHHHhC--c----ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHH
Q 038516          401 ECAIKLFCKMCREGLKCDNFALSGALSACAD--L----AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAE  474 (708)
Q Consensus       401 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  474 (708)
                      .+.+.+++.|.+.|.+-+..+|.+.......  .    .....+..+++.|++...-.+                     
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT---------------------  137 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT---------------------  137 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc---------------------
Confidence            4556777888888887777666553333222  1    133455556666655432110                     


Q ss_pred             HHHhhCCCCChHHHHHHHHHHHhcCC----hHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCc--HHHHHHHHHHh
Q 038516          475 SIFSQVLHPDLKCWNALLGGYSHYGM----AEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHSGL--VERGKILWNQM  546 (708)
Q Consensus       475 ~~~~~~~~~~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~  546 (708)
                             .++-.++..++..  ..++    .+.+..+|+.+.+.|+..+.  .....++..+.....  +.++.++++.+
T Consensus       138 -------s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l  208 (297)
T PF13170_consen  138 -------SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNAL  208 (297)
T ss_pred             -------CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHH
Confidence                   1222223333222  1122    24567788888888877643  334444443333222  45788899999


Q ss_pred             hHCCCCcChHHHHHHHHHHHhcCCH
Q 038516          547 KEHSLIPGHKHYSCMVSLLSRAGLL  571 (708)
Q Consensus       547 ~~~~~~p~~~~~~~l~~~~~~~g~~  571 (708)
                      .+.|+++....|..++-.-.-.+..
T Consensus       209 ~~~~~kik~~~yp~lGlLall~~~~  233 (297)
T PF13170_consen  209 KKNGVKIKYMHYPTLGLLALLEDPE  233 (297)
T ss_pred             HHcCCccccccccHHHHHHhcCCch
Confidence            9999988888787665444333333

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=90.43  E-value=55  Score=40.69  Aligned_cols=369  Identities=15%  Similarity=0.135  Sum_probs=172.3

Q ss_pred             HHhccCChhHHHHHHHHHHHhC--CCCChhhHHHHHHhcccCCChHHHHHHHhc-cCCCChhHHHHHHHHHHcCCCchHH
Q 038516          225 ACSRMGNFVCGKVIHARVIISN--TQVDLPLENALLDMYSKCSDTQTAFSVFTR-IENPDLVSWNSMIAGYMENGNGEKA  301 (708)
Q Consensus       225 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A  301 (708)
                      +-.+.+.+..|...++.-....  .......+..+...|+..+++|...-+... ...|+.  + .-|.-....|++..|
T Consensus      1392 aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~sl--~-~qil~~e~~g~~~da 1468 (2382)
T KOG0890|consen 1392 ASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPSL--Y-QQILEHEASGNWADA 1468 (2382)
T ss_pred             HHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCccH--H-HHHHHHHhhccHHHH
Confidence            3334455555555555421000  011223344455577777777776666552 323332  2 223334567888888


Q ss_pred             HHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHH-hHHHHHHHhcCCChhHHHHHhhcC
Q 038516          302 VDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVG-TTLLNMYFKNGDAESPQKVFMLIA  380 (708)
Q Consensus       302 ~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~~~~~~~  380 (708)
                      ...|+.+.+.  -++...+++.++......+.++......+...... .+....+ +.=+.+-.+.++++.......   
T Consensus      1469 ~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~--- 1542 (2382)
T KOG0890|consen 1469 AACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS--- 1542 (2382)
T ss_pred             HHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh---
Confidence            8888888854  23336677777776666666666555433333222 2222222 223444467777777766655   


Q ss_pred             CCCEeeehhh--HHHHhcCCChH--HHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhH
Q 038516          381 EKDIVLWTEM--IIGHSRMGDGE--CAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSV  456 (708)
Q Consensus       381 ~~~~~~~~~l--i~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  456 (708)
                      ..+...|...  ...+.+..+-+  .-...++.+.+.-+        .-+.+|+..|.+..                  .
T Consensus      1543 ~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i--------~~lsa~s~~~Sy~~------------------~ 1596 (2382)
T KOG0890|consen 1543 DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVI--------ENLSACSIEGSYVR------------------S 1596 (2382)
T ss_pred             cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhh--------hhHHHhhccchHHH------------------H
Confidence            4455556554  22222221111  11122222222111        11222332222222                  2


Q ss_pred             HHHHHHhhHhcCCHHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHH-HHHCCCCCC-----hHHHHH
Q 038516          457 CGSLVDMYAKNGDLRAAESIFSQVLH-----PDLKCWNALLGGYSHYGMAEEAFMVFEV-ILEHGLRPD-----EITFLS  525 (708)
Q Consensus       457 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~-m~~~g~~p~-----~~~~~~  525 (708)
                      |..++....-.. .+.-.+.+.....     .+..-|..-+..-....+..+-+--+++ +......|+     ..+|..
T Consensus      1597 Y~~~~kLH~l~e-l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLq 1675 (2382)
T KOG0890|consen 1597 YEILMKLHLLLE-LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQ 1675 (2382)
T ss_pred             HHHHHHHHHHHH-HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHH
Confidence            222222222111 1111111111110     1112232222211111111111111121 111111222     345777


Q ss_pred             HHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-----CC--CC----C---CHHHH
Q 038516          526 LLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-----PY--SE----I---RIELW  591 (708)
Q Consensus       526 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~~----~---~~~~~  591 (708)
                      ..+.+..+|.++.|...+-...+.+ .|  ..+--.+..+...|+...|+.++++.     +.  .+    |   +..+.
T Consensus      1676 sAriaR~aG~~q~A~nall~A~e~r-~~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~ 1752 (2382)
T KOG0890|consen 1676 SARIARLAGHLQRAQNALLNAKESR-LP--EIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIF 1752 (2382)
T ss_pred             HHHHHHhcccHHHHHHHHHhhhhcc-cc--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchhhhhhhh
Confidence            7777888899988887766665533 23  33444667888899999998888775     11  00    1   11222


Q ss_pred             H--H-HHHHH-HhcCC--HHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516          592 R--T-LLSTC-VAKRN--SRMVIQAAEQVLRLDPEDGTTHILLSNLY  632 (708)
Q Consensus       592 ~--~-l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  632 (708)
                      .  . ++.-| ...++  .+.-++.|.++.+..|.....|.++|.-|
T Consensus      1753 ~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1753 KKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred             hhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence            2  1 11112 22333  44567788899999997777777777433

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=90.40  E-value=0.81  Score=41.33  Aligned_cols=84  Identities=13%  Similarity=0.133  Sum_probs=59.6

Q ss_pred             HHhcCCHHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 038516          565 LSRAGLLDEAENLIAESPYSEIRI-ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAK  643 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~  643 (708)
                      |....++..|..-|.++-...|.. ..|..-+-.+.+..+++.+..-..+++++.|+..-.+..|+..+.....+++|+.
T Consensus        20 ~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~   99 (284)
T KOG4642|consen   20 CFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIK   99 (284)
T ss_pred             ccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHH
Confidence            334455666666666653333544 4455555556667788888888888888888888888888888888888888888


Q ss_pred             HHHHH
Q 038516          644 MRRKM  648 (708)
Q Consensus       644 ~~~~~  648 (708)
                      .+.+.
T Consensus       100 ~Lqra  104 (284)
T KOG4642|consen  100 VLQRA  104 (284)
T ss_pred             HHHHH
Confidence            87776

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=90.30  E-value=0.46  Score=41.01  Aligned_cols=45  Identities=18%  Similarity=0.178  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC----chHHHHHHHHH
Q 038516          604 SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR----WDCVAKMRRKM  648 (708)
Q Consensus       604 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~----~~eA~~~~~~~  648 (708)
                      +++|..-+++++.++|+...++..+|++|...+.    ..+|.++|++.
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA   99 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA   99 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            5567777888889999999999999999988753    33444444443

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.21  E-value=32  Score=37.67  Aligned_cols=146  Identities=11%  Similarity=-0.064  Sum_probs=82.4

Q ss_pred             hhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHH---HHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhc
Q 038516           50 MYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALI---AAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVS  126 (708)
Q Consensus        50 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll---~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  126 (708)
                      ....-++...+..-++.|+.+-+.-.-+....-+.+.   .-+.+.|+ +++|...|-+-... +.|     ..+++-+.
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgd-f~~A~~qYI~tI~~-le~-----s~Vi~kfL  408 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGD-FDEATDQYIETIGF-LEP-----SEVIKKFL  408 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCC-HHHHHHHHHHHccc-CCh-----HHHHHHhc
Confidence            4455667777777777777776654432222222222   23445677 88887766654432 222     23556666


Q ss_pred             cccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCc-ccHHHHHHHHhcCCChhHHHHH
Q 038516          127 LLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDA-VAWNSIILGNFKNDKMKEGLSL  203 (708)
Q Consensus       127 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~  203 (708)
                      .......--.+++.+.+.|+.. ..--+.|+.+|.+.++.++-.+..+....... .-....+..+.+.+-.++|.-+
T Consensus       409 daq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L  485 (933)
T KOG2114|consen  409 DAQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL  485 (933)
T ss_pred             CHHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence            6666767777788888887642 33345678888888888877777665552111 1133334444444444444433

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.17  E-value=14  Score=33.59  Aligned_cols=91  Identities=12%  Similarity=0.089  Sum_probs=50.6

Q ss_pred             CcHHHHHHHHHHhhHC--CCCcChHH---HHHHHHHHHhcCCHHHHHHHHHhC---CCCCCCHHHHHH---H--HHHHHh
Q 038516          534 GLVERGKILWNQMKEH--SLIPGHKH---YSCMVSLLSRAGLLDEAENLIAES---PYSEIRIELWRT---L--LSTCVA  600 (708)
Q Consensus       534 ~~~~~a~~~~~~~~~~--~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~---l--~~~~~~  600 (708)
                      .+++.|+..|+..-+-  |-..+...   +--....-...+++.+|.++|++.   ... .+..-|..   +  ...|.-
T Consensus       128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~-n~LLKys~KdyflkAgLChl  206 (288)
T KOG1586|consen  128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD-NNLLKYSAKDYFLKAGLCHL  206 (288)
T ss_pred             HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-chHHHhHHHHHHHHHHHHhH
Confidence            4555555555555432  22222222   222334445678889999998886   211 12222221   1  222433


Q ss_pred             -cCCHHHHHHHHHHHHhcCCCCcchH
Q 038516          601 -KRNSRMVIQAAEQVLRLDPEDGTTH  625 (708)
Q Consensus       601 -~~~~~~a~~~~~~~~~~~p~~~~~~  625 (708)
                       ..|.-.+...+++-.+++|.-....
T Consensus       207 ~~~D~v~a~~ALeky~~~dP~F~dsR  232 (288)
T KOG1586|consen  207 CKADEVNAQRALEKYQELDPAFTDSR  232 (288)
T ss_pred             hcccHHHHHHHHHHHHhcCCcccccH
Confidence             3788888888999999999876653

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=90.11  E-value=8.3  Score=33.45  Aligned_cols=135  Identities=11%  Similarity=0.030  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCC--ChhHHHHHhccC
Q 038516           99 TFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCG--DFESAKRIFGLI  176 (708)
Q Consensus        99 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~  176 (708)
                      .++.++.+.+.+++|+...+..+++.+.+.|.+..    +.+++..++-+|.......+-.+....  -..-|.+++.++
T Consensus        13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL   88 (167)
T PF07035_consen   13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL   88 (167)
T ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence            35666677778888888899999999988887644    445566676555554443332222211  123334444443


Q ss_pred             CCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh
Q 038516          177 GDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIIS  245 (708)
Q Consensus       177 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  245 (708)
                      .    ..+..++..+...|++-+|+++.+.....    +......++.+..+.+|...--.++.-....
T Consensus        89 ~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   89 G----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             h----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3    34566778888899999999988775322    2233455667777777666555555555443

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=89.96  E-value=1.3  Score=29.77  Aligned_cols=36  Identities=8%  Similarity=0.102  Sum_probs=27.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516          591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  626 (708)
                      +-.+.-++.+.|+++.|.+..+.+++.+|+|..+..
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~   39 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQS   39 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHH
Confidence            344566788999999999999999999999876433

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.71  E-value=0.86  Score=27.06  Aligned_cols=32  Identities=34%  Similarity=0.504  Sum_probs=22.7

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD  519 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  519 (708)
                      .+|..+...|...|++++|+..|++.++  +.|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALE--LDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHH--HCcC
Confidence            4567777788888888888888888877  3554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=89.63  E-value=0.71  Score=27.07  Aligned_cols=25  Identities=8%  Similarity=0.126  Sum_probs=11.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          596 STCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       596 ~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      .++...|+.++|...++++++..|+
T Consensus         8 ~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    8 RCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHccCHHHHHHHHHHHHHHCcC
Confidence            3334444444444444444444443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.98  E-value=4.5  Score=35.84  Aligned_cols=93  Identities=16%  Similarity=0.100  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHhccCcHHHHHHHHHHhhHC---CCCcC----hHH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI--TFLSLLSACSHSGLVERGKILWNQMKEH---SLIPG----HKH  557 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~----~~~  557 (708)
                      .+..+...|++.|+.+.|++.|.++.+....|...  .+..++..+...+++..+...+.++...   |-.++    ...
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            34455556666666666666666666543333322  2444555555566666666555555433   11111    122


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      |..|.  +...|++.+|-+.|-+.
T Consensus       118 ~~gL~--~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  118 YEGLA--NLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHH--HHHhchHHHHHHHHHcc
Confidence            33222  33467788877777665

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=88.97  E-value=71  Score=39.85  Aligned_cols=65  Identities=9%  Similarity=-0.078  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      -..+|-.....++..|.++.|..+.-.+.+..  -+.++.-.+..++..|+-..|..+++.-.+.+.
T Consensus      1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            36789999999999999999999988887776  466788999999999999999999998776543

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=88.86  E-value=0.75  Score=27.30  Aligned_cols=28  Identities=14%  Similarity=0.189  Sum_probs=25.1

Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          623 TTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      .+|..+|.+|...|++++|.+.+++..+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3688999999999999999999998765

...

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.63  E-value=29  Score=34.93  Aligned_cols=66  Identities=15%  Similarity=0.213  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE----DGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      .....|..+...+++.|+++.|...+.++....+.    .+.....-+++++..|+..+|...++.....
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~  213 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC  213 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            35667888999999999999999999999886522    4556677799999999999999998877763

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=88.37  E-value=5.2  Score=38.80  Aligned_cols=51  Identities=4%  Similarity=-0.030  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHHHHcCCCCCcchHHHHHHHhcc--cc----chHHHHHHHHHHHHhCC
Q 038516           96 AHLTFRLIDQMEFECLRPNGLTFTSLAQAVSL--LE----DQLMGSLLHAQVIKYGS  146 (708)
Q Consensus        96 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~g~  146 (708)
                      ++..+.+++.|.+.|.+-+..+|.+.+-....  ..    ....+..+++.|++...
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~  134 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHP  134 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCc
Confidence            45677888888888888887777664433332  11    34456777777777653

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=87.90  E-value=10  Score=32.94  Aligned_cols=133  Identities=11%  Similarity=0.127  Sum_probs=81.6

Q ss_pred             HHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccC--CChHHHHHHHhccC
Q 038516          201 LSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKC--SDTQTAFSVFTRIE  278 (708)
Q Consensus       201 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~  278 (708)
                      ++.++.+.+.++.|+...+..+++.+.+.|++...    ..++..++-+|.......+-.+...  .-..-+..++.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            56677777889999999999999999999986544    4445555555554433333222211  11344555555553


Q ss_pred             CCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHH
Q 038516          279 NPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIK  346 (708)
Q Consensus       279 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~  346 (708)
                          ..+..++..+...|++-+|+++.+.....     +......++.+....+|...-..+++....
T Consensus        90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~~-----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   90 ----TAYEEIIEVLLSKGQVLEALRYARQYHKV-----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc-----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                24667778889999999999998875332     112223455555555555554455544444

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.72  E-value=0.55  Score=27.57  Aligned_cols=28  Identities=14%  Similarity=0.197  Sum_probs=24.9

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          624 THILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       624 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++..++.+|.+.|++++|.+.++++.+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            4678999999999999999999998764

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=87.50  E-value=0.64  Score=27.80  Aligned_cols=21  Identities=24%  Similarity=0.333  Sum_probs=11.8

Q ss_pred             hHHHHHHHHHHHhcCCHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAE  575 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~  575 (708)
                      ...|..|+..|...|++++|+
T Consensus        13 ~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhhc
Confidence            455555555555555555553

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.31  E-value=0.8  Score=28.73  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=22.9

Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          623 TTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      .++..|+.+|...|++++|..++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3578899999999999999999888754

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.02  E-value=19  Score=31.11  Aligned_cols=25  Identities=8%  Similarity=-0.028  Sum_probs=12.2

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          624 THILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       624 ~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      ....|+-+-++.|++.+|.+.|..+
T Consensus       169 ArEALglAa~kagd~a~A~~~F~qi  193 (221)
T COG4649         169 AREALGLAAYKAGDFAKAKSWFVQI  193 (221)
T ss_pred             HHHHHhHHHHhccchHHHHHHHHHH
Confidence            3444444445555555555555444

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.86  E-value=6.8  Score=39.42  Aligned_cols=91  Identities=16%  Similarity=0.076  Sum_probs=50.0

Q ss_pred             HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516          530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI  608 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~  608 (708)
                      +...|+++.+...+...... +.....+..++++.+...|++++|..+-.-| ..+-.++++...........|-++++.
T Consensus       333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~  411 (831)
T PRK15180        333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSY  411 (831)
T ss_pred             HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHH
Confidence            44566666666655554432 2223344555666666666666666666555 222234555544444455556666666


Q ss_pred             HHHHHHHhcCCCC
Q 038516          609 QAAEQVLRLDPED  621 (708)
Q Consensus       609 ~~~~~~~~~~p~~  621 (708)
                      -.+++++.++|..
T Consensus       412 ~~wk~~~~~~~~~  424 (831)
T PRK15180        412 HYWKRVLLLNPET  424 (831)
T ss_pred             HHHHHHhccCChh
Confidence            6666666666543

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.80  E-value=50  Score=35.70  Aligned_cols=146  Identities=11%  Similarity=0.053  Sum_probs=75.1

Q ss_pred             ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHH---Hh----cCCHH
Q 038516          500 MAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLL---SR----AGLLD  572 (708)
Q Consensus       500 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~~  572 (708)
                      +...|..++++..+.| .|-..--...+..+.. ++++.+.-.+..+.+.|.......-..+....   ..    ..+.+
T Consensus       379 ~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~  456 (552)
T KOG1550|consen  379 NLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLE  456 (552)
T ss_pred             CHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchh
Confidence            5666777777777765 3332222222333333 55555555555555543332211111111111   11    12445


Q ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc---CCchHHHHHH
Q 038516          573 EAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT---GRWDCVAKMR  645 (708)
Q Consensus       573 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~eA~~~~  645 (708)
                      .+..++.+.... .+......+...|..    ..+.+.|...+.++....   +.....|+..+..-   .++..|.+++
T Consensus       457 ~~~~~~~~a~~~-g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~~  532 (552)
T KOG1550|consen  457 RAFSLYSRAAAQ-GNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRYY  532 (552)
T ss_pred             HHHHHHHHHHhc-cCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHHH
Confidence            566666666444 345555555544433    336777777777776665   55666777766552   1267777777


Q ss_pred             HHHhcC
Q 038516          646 RKMKGS  651 (708)
Q Consensus       646 ~~~~~~  651 (708)
                      ++..+.
T Consensus       533 ~~~~~~  538 (552)
T KOG1550|consen  533 DQASEE  538 (552)
T ss_pred             HHHHhc
Confidence            776553

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=86.76  E-value=3.3  Score=39.26  Aligned_cols=60  Identities=12%  Similarity=0.129  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR  616 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  616 (708)
                      ++..++..+...|+++.+...+++. ...|-+...|..++.+|...|+...|+..|+++..
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            3444444455555555554444444 22223444455555555555555555555444443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=86.62  E-value=55  Score=35.93  Aligned_cols=17  Identities=12%  Similarity=0.315  Sum_probs=12.7

Q ss_pred             HHhcCCchHHHHHHHHH
Q 038516          632 YAATGRWDCVAKMRRKM  648 (708)
Q Consensus       632 ~~~~g~~~eA~~~~~~~  648 (708)
                      +...|+|++|.+.++++
T Consensus       515 ~~~~g~~~~AL~~i~~L  531 (613)
T PF04097_consen  515 LYHAGQYEQALDIIEKL  531 (613)
T ss_dssp             HHHTT-HHHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHhC
Confidence            56789999998888765

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.54  E-value=19  Score=31.87  Aligned_cols=89  Identities=13%  Similarity=0.020  Sum_probs=63.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHH-----HHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHH
Q 038516          491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLS-----LLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLL  565 (708)
Q Consensus       491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  565 (708)
                      +...+...|++++|...++.....   |....+..     |.+.....|.+++|+..++.....+..+  .....-++.+
T Consensus        95 lAk~~ve~~~~d~A~aqL~~~l~~---t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDil  169 (207)
T COG2976          95 LAKAEVEANNLDKAEAQLKQALAQ---TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDIL  169 (207)
T ss_pred             HHHHHHhhccHHHHHHHHHHHHcc---chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHH
Confidence            345678889999999999988863   33333333     3446778899999999998876644322  2233456889


Q ss_pred             HhcCCHHHHHHHHHhCCCC
Q 038516          566 SRAGLLDEAENLIAESPYS  584 (708)
Q Consensus       566 ~~~g~~~~A~~~~~~~~~~  584 (708)
                      ...|+-++|..-|++....
T Consensus       170 l~kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         170 LAKGDKQEARAAYEKALES  188 (207)
T ss_pred             HHcCchHHHHHHHHHHHHc
Confidence            9999999999999887443

>PRK11619 lytic murein transglycosylase; Provisional

Probab=86.09  E-value=59  Score=35.80  Aligned_cols=92  Identities=12%  Similarity=-0.134  Sum_probs=56.4

Q ss_pred             HHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCCCcchHHHHHHHHHhcCCc
Q 038516          562 VSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL---DPEDGTTHILLSNLYAATGRW  638 (708)
Q Consensus       562 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~~~~~~~~l~~~~~~~g~~  638 (708)
                      +..+...|+..+|...+..+... .+......+.......|..+.++....+....   +-..+..|......+...-..
T Consensus       414 a~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v  492 (644)
T PRK11619        414 VRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGI  492 (644)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCC
Confidence            45667789999998888776444 45556666666667788888888877654331   112233455566666666666


Q ss_pred             hHHHHHHHHHhcCCCc
Q 038516          639 DCVAKMRRKMKGSMLG  654 (708)
Q Consensus       639 ~eA~~~~~~~~~~~~~  654 (708)
                      +.+.-.---..++++.
T Consensus       493 ~~~lv~ai~rqES~f~  508 (644)
T PRK11619        493 PQSYAMAIARQESAWN  508 (644)
T ss_pred             CHHHHHHHHHHhcCCC
Confidence            6665432223344443

>smart00028 TPR Tetratricopeptide repeats

Probab=86.05  E-value=1.4  Score=25.08  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=12.6

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516          593 TLLSTCVAKRNSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       593 ~l~~~~~~~~~~~~a~~~~~~~~~~~p  619 (708)
                      .++..+...|+++.|...++++++.+|
T Consensus         6 ~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        6 NLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            334444444445555555544444444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=85.99  E-value=22  Score=32.13  Aligned_cols=127  Identities=16%  Similarity=0.090  Sum_probs=79.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC--CCCcChHHHHHHHHH
Q 038516          488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEH--SLIPGHKHYSCMVSL  564 (708)
Q Consensus       488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~  564 (708)
                      .+.-+..+.+.+...+++...++-++.  +| |..+-..++..++-.|++++|..-++-....  ...+....|..++.+
T Consensus         4 l~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           4 LRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             hHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            445566777888899999998888876  45 5666777888999999999998888777653  223334555555433


Q ss_pred             HHhcCCHHHHHH-HHHhC--CC-CC-CCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          565 LSRAGLLDEAEN-LIAES--PY-SE-IRIELWRTLLSTCV--AKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       565 ~~~~g~~~~A~~-~~~~~--~~-~~-~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                             +.+.. +|.--  |. .. |.+.-...++.+..  ..|.-+.+...-+.+++.-|....
T Consensus        82 -------ea~R~evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG  140 (273)
T COG4455          82 -------EAARNEVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIG  140 (273)
T ss_pred             -------HHHHHHHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCc
Confidence                   23332 23221  21 11 44444455555543  344566677777788887776554

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=85.87  E-value=59  Score=35.65  Aligned_cols=39  Identities=15%  Similarity=0.180  Sum_probs=24.6

Q ss_pred             HHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC
Q 038516          289 IAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA  330 (708)
Q Consensus       289 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~  330 (708)
                      ...+.-.|+++.|++.+....   ....|...+...+..+.-
T Consensus       265 f~~LlLtgqFE~AI~~L~~~~---~~~~dAVH~AIaL~~~gL  303 (613)
T PF04097_consen  265 FQVLLLTGQFEAAIEFLYRNE---FNRVDAVHFAIALAYYGL  303 (613)
T ss_dssp             HHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHhhHHHHHHHHHhhc---cCcccHHHHHHHHHHcCC
Confidence            345566899999999888722   456677777777765543

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=85.82  E-value=16  Score=30.79  Aligned_cols=63  Identities=22%  Similarity=0.233  Sum_probs=38.4

Q ss_pred             ccCcHHHHHHHHHHhhHCCCCcC---hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 038516          532 HSGLVERGKILWNQMKEHSLIPG---HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTC  598 (708)
Q Consensus       532 ~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~  598 (708)
                      ..++.+++..+++.|.-  +.|+   ..++.  +..+...|+|.+|..++++.....+....-..|+..|
T Consensus        22 ~~~d~~D~e~lLdALrv--LrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C   87 (153)
T TIGR02561        22 RSADPYDAQAMLDALRV--LRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC   87 (153)
T ss_pred             hcCCHHHHHHHHHHHHH--hCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence            36777777777777765  4444   33332  3457778888888888888865534433333444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.76  E-value=59  Score=35.49  Aligned_cols=49  Identities=10%  Similarity=0.135  Sum_probs=31.0

Q ss_pred             hhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchH
Q 038516          252 PLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEK  300 (708)
Q Consensus       252 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~  300 (708)
                      .+...+++.+...|++++|-...-.|...+..-|...+..+...++...
T Consensus       393 kv~~~yI~HLl~~~~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~  441 (846)
T KOG2066|consen  393 KVGKTYIDHLLFEGKYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTD  441 (846)
T ss_pred             HHHHHHHHHHHhcchHHHHHhhhHHHhcchHHHHHHHHHHhccccccch
Confidence            3455566666666777777777666666666666666666666555443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=85.75  E-value=1.5  Score=27.97  Aligned_cols=26  Identities=12%  Similarity=0.226  Sum_probs=22.1

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          626 ILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       626 ~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ..|+.+|.+.|+.+.|+++++.....
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~   28 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEE   28 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence            46889999999999999999988754

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=85.70  E-value=7.2  Score=33.96  Aligned_cols=43  Identities=9%  Similarity=0.043  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          604 SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       604 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      +++|...|+++++.+|++......|--       ...|-++..++.+++.
T Consensus        96 F~kA~~~FqkAv~~~P~ne~Y~ksLe~-------~~kap~lh~e~~~~~~  138 (186)
T PF06552_consen   96 FEKATEYFQKAVDEDPNNELYRKSLEM-------AAKAPELHMEIHKQGL  138 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHH-------HHTHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhcCCCcHHHHHHHHH-------HHhhHHHHHHHHHHHh
Confidence            567888899999999998775555532       2345555555555543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.24  E-value=8.9  Score=36.45  Aligned_cols=97  Identities=16%  Similarity=0.223  Sum_probs=64.9

Q ss_pred             CCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-C------C--ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC
Q 038516          449 GHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-H------P--DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD  519 (708)
Q Consensus       449 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  519 (708)
                      |.+.+..+...++..-....+++.++..+-++. .      +  ...+|-.+   + -.=++++++.++..=++-|+-||
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irl---l-lky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRL---L-LKYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHH---H-HccChHHHHHHHhCcchhccccc
Confidence            444445555555555555667777777665553 1      1  22233222   2 23467788888888888888899


Q ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHhhHC
Q 038516          520 EITFLSLLSACSHSGLVERGKILWNQMKEH  549 (708)
Q Consensus       520 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  549 (708)
                      ..+++.++..+.+.+++.+|.++...|...
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            999999999999988888888887777654

>PF14432 DYW_deaminase: DYW family of nucleic acid deaminases

Probab=85.24  E-value=0.96  Score=36.62  Aligned_cols=27  Identities=48%  Similarity=0.800  Sum_probs=22.0

Q ss_pred             ceeEEEecCeEEEEEeCCCCCcchHHHHHHH
Q 038516          658 GLSWIEAKNNVHVFSSGDQSHPKIDDAQAEL  688 (708)
Q Consensus       658 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  688 (708)
                      |+||+++    |.|++||.+||+...+.+.+
T Consensus         2 ~~~w~~~----h~F~sgd~shp~~~~~~~~~   28 (116)
T PF14432_consen    2 GCSWIEV----HSFVSGDRSHPQSELINKMK   28 (116)
T ss_pred             CCCccce----EEEEeCCCcCccHHHHHHHH
Confidence            6889977    99999999999986555533

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.21  E-value=10  Score=33.86  Aligned_cols=76  Identities=24%  Similarity=0.193  Sum_probs=52.2

Q ss_pred             HHhcCCHHHHHHHHHhCCCC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC----CcchHHHHHHHHHhcCCc
Q 038516          565 LSRAGLLDEAENLIAESPYS-E-IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE----DGTTHILLSNLYAATGRW  638 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~  638 (708)
                      ..+.|+ ++|.+.|-.+... . .++.... .+..|....|.+++.+++-+++++.+.    |+..+..|+.+|.++|++
T Consensus       117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~-aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~  194 (203)
T PF11207_consen  117 WSRFGD-QEALRRFLQLEGTPELETAELQY-ALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY  194 (203)
T ss_pred             hhccCc-HHHHHHHHHHcCCCCCCCHHHHH-HHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence            445565 5666666555222 1 2444444 444555578999999999999987544    467788999999999999


Q ss_pred             hHHH
Q 038516          639 DCVA  642 (708)
Q Consensus       639 ~eA~  642 (708)
                      +.|-
T Consensus       195 e~AY  198 (203)
T PF11207_consen  195 EQAY  198 (203)
T ss_pred             hhhh
Confidence            8874

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.15  E-value=30  Score=31.64  Aligned_cols=90  Identities=9%  Similarity=-0.030  Sum_probs=50.1

Q ss_pred             HHHHHHhc-CCHHHHHHHHHhCC----CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH------
Q 038516          561 MVSLLSRA-GLLDEAENLIAESP----YSEI---RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI------  626 (708)
Q Consensus       561 l~~~~~~~-g~~~~A~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~------  626 (708)
                      +...|... .+++.|+..|+.+.    ....   ....+......-...+++.+|..+|+++....-+++..-.      
T Consensus       119 iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kdyf  198 (288)
T KOG1586|consen  119 IAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYF  198 (288)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHH
Confidence            44555544 56666666666651    1101   1223333344445688999999999999887766654421      


Q ss_pred             -HHHHHHHhcCCchHHHHHHHHHhc
Q 038516          627 -LLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       627 -~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                       .-+-++...++.-.+...+++-.+
T Consensus       199 lkAgLChl~~~D~v~a~~ALeky~~  223 (288)
T KOG1586|consen  199 LKAGLCHLCKADEVNAQRALEKYQE  223 (288)
T ss_pred             HHHHHHhHhcccHHHHHHHHHHHHh
Confidence             222233333555555555555444

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=85.00  E-value=17  Score=35.12  Aligned_cols=93  Identities=12%  Similarity=0.083  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516          556 KHYSCMVSLLSRAGLLDEAENLIAES-----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN  630 (708)
Q Consensus       556 ~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  630 (708)
                      .+|.-=++-|.+..++..|...|.+.     +....+...|..-..+-...||+..|+.-+.+++.++|.+.-+|..=+.
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak  161 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK  161 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence            34555567788999999999999876     2221234556666666667899999999999999999999999999999


Q ss_pred             HHHhcCCchHHHHHHHHH
Q 038516          631 LYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       631 ~~~~~g~~~eA~~~~~~~  648 (708)
                      ++....++++|....+..
T Consensus       162 c~~eLe~~~~a~nw~ee~  179 (390)
T KOG0551|consen  162 CLLELERFAEAVNWCEEG  179 (390)
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            999999977777666544

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.88  E-value=1.8  Score=36.88  Aligned_cols=52  Identities=12%  Similarity=0.023  Sum_probs=23.5

Q ss_pred             HHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHH
Q 038516          188 ILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIH  239 (708)
Q Consensus       188 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  239 (708)
                      |..+.+.+.++....+++.+...+..-+....+.++..|++.++.+....++
T Consensus        14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L   65 (143)
T PF00637_consen   14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFL   65 (143)
T ss_dssp             HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTT
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHc
Confidence            4444444555555555555554433333444455555555554444444333

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=84.87  E-value=11  Score=33.42  Aligned_cols=93  Identities=12%  Similarity=0.031  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCCcch----H
Q 038516          556 KHYSCMVSLLSRAGLLDEAENLIAESPYSEI----RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD--PEDGTT----H  625 (708)
Q Consensus       556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~----~  625 (708)
                      ..+..+++.|.+.|+.++|.+.+.++...-.    -...+-.++..+...+|+..+...+.++..+-  +++...    -
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3455556666666666666666666522211    12334444455555666666666655554432  111111    1


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHH
Q 038516          626 ILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       626 ~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      ..-|-.+...|+|.+|.+.|-..
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHcc
Confidence            12233455567888888777533

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=84.80  E-value=3.2  Score=31.78  Aligned_cols=43  Identities=19%  Similarity=0.249  Sum_probs=28.7

Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ..+++.++.+|++......++..+...|++++|.+.+-.+.+.
T Consensus         9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~   51 (90)
T PF14561_consen    9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRR   51 (90)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            4456666777777777777777777777777777776666554

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.70  E-value=66  Score=35.14  Aligned_cols=31  Identities=16%  Similarity=0.319  Sum_probs=23.8

Q ss_pred             hHHHHHHHhhHhcCCHHHHHHHHhhCCCCCh
Q 038516          455 SVCGSLVDMYAKNGDLRAAESIFSQVLHPDL  485 (708)
Q Consensus       455 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  485 (708)
                      .+...|+..|...+++++|..++-...++++
T Consensus       506 ~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v  536 (846)
T KOG2066|consen  506 ALLEVLAHLYLYDNKYEKALPIYLKLQDKDV  536 (846)
T ss_pred             hHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence            3444588899999999999998887765543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=84.38  E-value=3.1  Score=37.09  Aligned_cols=111  Identities=13%  Similarity=0.011  Sum_probs=71.2

Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHH-HHHHHHHHHHhcCCHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIE-LWRTLLSTCVAKRNSRM  606 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~  606 (708)
                      .|-..|-+.-|.--|.....  +.|+ +.+||.|+--+...|+++.|.+.|+..-...|... ....-+-++.--|+++.
T Consensus        74 lYDSlGL~~LAR~DftQaLa--i~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~L  151 (297)
T COG4785          74 LYDSLGLRALARNDFSQALA--IRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKL  151 (297)
T ss_pred             hhhhhhHHHHHhhhhhhhhh--cCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHh
Confidence            45666777777777776665  7776 67788888888889999999999888743323321 11111222233578888


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhc--CCchHHHHH
Q 038516          607 VIQAAEQVLRLDPEDGTTHILLSNLYAAT--GRWDCVAKM  644 (708)
Q Consensus       607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~eA~~~  644 (708)
                      |.+-+.+.-+-+|++|-  .. .|+|...  -+..+|..-
T Consensus       152 Aq~d~~~fYQ~D~~DPf--R~-LWLYl~E~k~dP~~A~tn  188 (297)
T COG4785         152 AQDDLLAFYQDDPNDPF--RS-LWLYLNEQKLDPKQAKTN  188 (297)
T ss_pred             hHHHHHHHHhcCCCChH--HH-HHHHHHHhhCCHHHHHHH
Confidence            98888888888888863  22 2444443  344455543

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=84.22  E-value=5.8  Score=36.36  Aligned_cols=64  Identities=16%  Similarity=0.136  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhcCCHHH-------HHHHHHHHHhcCC--C----CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          588 IELWRTLLSTCVAKRNSRM-------VIQAAEQVLRLDP--E----DGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       588 ~~~~~~l~~~~~~~~~~~~-------a~~~~~~~~~~~p--~----~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ..++..+.|.|+..|+.+.       |...|+++.+.+.  .    .......+|.++.+.|++++|.+.|.++...
T Consensus       118 A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~  194 (214)
T PF09986_consen  118 AGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGS  194 (214)
T ss_pred             HHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence            3456667777777777444       4444555554332  2    2345778999999999999999999988764

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=83.91  E-value=11  Score=29.11  Aligned_cols=86  Identities=19%  Similarity=0.167  Sum_probs=57.3

Q ss_pred             chHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHh
Q 038516          130 DQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVG  209 (708)
Q Consensus       130 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  209 (708)
                      ..++|..+-+++...+-. ...+--.-++.+...|++++|..+.+.+..||...|-+|-..  +.|-.+.+..-+.+|..
T Consensus        20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~   96 (115)
T TIGR02508        20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA   96 (115)
T ss_pred             HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence            345666666666555422 333334445567788999999999999998999988877553  56666767777777776


Q ss_pred             CCCCCCcchH
Q 038516          210 SGVNPTQFSY  219 (708)
Q Consensus       210 ~g~~p~~~~~  219 (708)
                      .| .|...+|
T Consensus        97 sg-~p~lq~F  105 (115)
T TIGR02508        97 SG-DPRLQTF  105 (115)
T ss_pred             CC-CHHHHHH
Confidence            65 3444344

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=83.53  E-value=8.2  Score=34.41  Aligned_cols=42  Identities=12%  Similarity=-0.030  Sum_probs=18.0

Q ss_pred             cCcHHHHHHHHHHhhHC---CCCcChHHHHHHHHHHHhcCCHHHH
Q 038516          533 SGLVERGKILWNQMKEH---SLIPGHKHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       533 ~~~~~~a~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A  574 (708)
                      ..+.+++..++-+..+.   +-.+++..+.+|+..+.+.|+++.|
T Consensus       153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            34444444444444332   2233444444444444444444443

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=83.17  E-value=2.3  Score=42.89  Aligned_cols=88  Identities=13%  Similarity=0.072  Sum_probs=64.3

Q ss_pred             HHHHhcCCHHHHHHHHHhCCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 038516          563 SLLSRAGLLDEAENLIAESPYSEIRIEL-WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCV  641 (708)
Q Consensus       563 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA  641 (708)
                      +.+...+.++.|..++.++-...|+-.+ +..-..++.+.+++..|+.-+.++++++|.....|..-|.++...+++.+|
T Consensus        12 n~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A   91 (476)
T KOG0376|consen   12 NEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKA   91 (476)
T ss_pred             hhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHH
Confidence            4455666777777777776433354333 333335677788888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhc
Q 038516          642 AKMRRKMKG  650 (708)
Q Consensus       642 ~~~~~~~~~  650 (708)
                      ...++....
T Consensus        92 ~~~l~~~~~  100 (476)
T KOG0376|consen   92 LLDLEKVKK  100 (476)
T ss_pred             HHHHHHhhh
Confidence            888886654

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=82.84  E-value=47  Score=32.08  Aligned_cols=21  Identities=5%  Similarity=-0.107  Sum_probs=16.0

Q ss_pred             HHHHHhcCCchHHHHHHHHHh
Q 038516          629 SNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       629 ~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      +..+++.++|++|.+.++...
T Consensus       253 ~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  253 GKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHhhcCHHHHHHHHHHHH
Confidence            556777889999998887543

It is also involved in sporulation [].

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=82.83  E-value=20  Score=27.72  Aligned_cols=60  Identities=23%  Similarity=0.348  Sum_probs=42.9

Q ss_pred             HhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHH
Q 038516          462 DMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFL  524 (708)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  524 (708)
                      ..+...|++++|..+.+....||...|-+|-.  .+.|-.+++..-+.+|...| .|....|.
T Consensus        47 sSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~sg-~p~lq~Fa  106 (115)
T TIGR02508        47 SSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAASG-DPRLQTFV  106 (115)
T ss_pred             HHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence            34567888888888888888888888876643  45677777777777777766 55555554

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=82.35  E-value=61  Score=32.99  Aligned_cols=52  Identities=12%  Similarity=-0.010  Sum_probs=25.2

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHHHHh--ccCcHHHHHHHHHHhhH
Q 038516          496 SHYGMAEEAFMVFEVILEHGLRPDEI--TFLSLLSACS--HSGLVERGKILWNQMKE  548 (708)
Q Consensus       496 ~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~--~~~~~~~a~~~~~~~~~  548 (708)
                      .+.+++..|.++|+++... ++++..  .+..+..+|.  ..-++++|.+.++....
T Consensus       142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3455666666666666654 444333  2223333332  23455566666655544

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=82.24  E-value=79  Score=34.22  Aligned_cols=45  Identities=20%  Similarity=0.180  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHH--HHHh-hHhcCCHHHHHHHHhhC
Q 038516          435 LKQGEMIHSQAEKTGHGVEMSVCGS--LVDM-YAKNGDLRAAESIFSQV  480 (708)
Q Consensus       435 ~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~g~~~~A~~~~~~~  480 (708)
                      ...+..+++...+.|... ......  ...+ +....+.+.|...|+.+
T Consensus       228 ~~~a~~~~~~~a~~g~~~-a~~~~g~~y~~G~~g~~~d~e~a~~~l~~a  275 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSE-AQYALGICYLAGTYGVTQDLESAIEYLKLA  275 (552)
T ss_pred             hhHHHHHHHHHHhhcchH-HHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence            455666666666655221 111111  1112 33445566666655544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=81.49  E-value=3.9  Score=25.42  Aligned_cols=28  Identities=36%  Similarity=0.439  Sum_probs=18.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILE  513 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  513 (708)
                      .+++.|...|...|++++|..++++...
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4566666777777777777777776654

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=81.01  E-value=65  Score=32.46  Aligned_cols=53  Identities=4%  Similarity=-0.090  Sum_probs=26.3

Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH-hcCCHHHHHHHHHhC
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS-RAGLLDEAENLIAES  581 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~  581 (708)
                      .+.+.|-+..|.++.+-+...+..-|+...-.+++.|. ++++++--.++++..
T Consensus       112 ~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~  165 (360)
T PF04910_consen  112 SLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP  165 (360)
T ss_pred             HHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence            45556666666666666655322212333333444443 555555555555543

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=80.42  E-value=19  Score=27.94  Aligned_cols=58  Identities=14%  Similarity=0.178  Sum_probs=37.7

Q ss_pred             HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHH
Q 038516          503 EAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMV  562 (708)
Q Consensus       503 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~  562 (708)
                      +..+-++.+....+-|+.......+.+|.+.+++..|.++|+.++.+ |.  ....|..++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHH
Confidence            45566666666777888888888888888888888888888887764 32  222565554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=80.25  E-value=43  Score=31.91  Aligned_cols=64  Identities=8%  Similarity=-0.010  Sum_probs=35.5

Q ss_pred             CCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHh-CCCCChhhHHHHHHhcccCCChHHHHHHH
Q 038516          211 GVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIIS-NTQVDLPLENALLDMYSKCSDTQTAFSVF  274 (708)
Q Consensus       211 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  274 (708)
                      |..++..+...++..++..+++..-.++++..... +...|...|..+++.....|+..-..++.
T Consensus       197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI  261 (292)
T PF13929_consen  197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKII  261 (292)
T ss_pred             ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHh
Confidence            34555566666666666666666666666555444 34445555555555555555554444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	708
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-12
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-05
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-05

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 67.9 bits (164), Expect = 7e-12
 Identities = 27/163 (16%), Positives = 53/163 (32%), Gaps = 11/163 (6%)

Query: 439 EMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIF-------SQVLHPDLKCWNAL 491
              HSQA+ +G    +    +          L  A  +         +     L  +NA+
Sbjct: 115 SGQHSQAQLSGQQQRL---LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAV 171

Query: 492 LGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERG-KILWNQMKEHS 550
           + G++  G  +E   V  ++ + GL PD +++ + L             +    QM +  
Sbjct: 172 MLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEG 231

Query: 551 LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRT 593
           L       + ++S   RA +L     +               T
Sbjct: 232 LKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNT 274

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 53.7 bits (127), Expect = 2e-07
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 7/102 (6%)

Query: 11  NIATLIQICASITSLKRARQIHALVLTTNHIPINAQ-SPYMYNNVLSMYGRCGSIRDARQ 69
            +    + C     L  A  +  LV+           +  MYN V+  + R G+ ++   
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHL--LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVY 186

Query: 70  VFDEIPKRSL----VSYNALIAAYSRDHDHAHLTFRLIDQME 107
           V   +    L    +SY A +    R    A    R ++QM 
Sbjct: 187 VLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 46.7 bits (109), Expect = 2e-05
 Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 155 SLLGMYSNCGDFESAKRIFGLIGDK-------DAVAWNSIILGNFKNDKMKEGLSLFGAM 207
           +             A  +  +   +           +N+++LG  +    KE + +   +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191

Query: 208 VGSGVNPTQFSYSMLLNACSRMGN 231
             +G+ P   SY+  L    R   
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQ 215

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 44.0 bits (102), Expect = 2e-04
 Identities = 14/120 (11%), Positives = 35/120 (29%), Gaps = 9/120 (7%)

Query: 207 MVGSGVNPTQFSYSMLLNACSRMGNFVCGKVI---HARVIISNTQVDLPLENALLDMYSK 263
              + ++  Q         C           +   H         + L + NA++  +++
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177

Query: 264 CSDTQTAFSVFTRIE----NPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEY 319
               +    V   ++     PDL+S+ + +            ++    L +MS       
Sbjct: 178 QGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC--LEQMSQEGLKLQ 235

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.5 bits (130), Expect = 1e-07
 Identities = 99/674 (14%), Positives = 197/674 (29%), Gaps = 204/674 (30%)

Query: 93  HDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTC- 151
           H H H+ F    + +++               +S+ ED  + +             D C 
Sbjct: 2   HHHHHMDFE-TGEHQYQY-----------KDILSVFEDAFVDNF------------D-CK 36

Query: 152 -VQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGS 210
            VQ     + S     E    I   I  KDAV+    +       K +E +  F   V  
Sbjct: 37  DVQDMPKSILSK----EEIDHI---IMSKDAVSGTLRLFWTLL-SKQEEMVQKF---VEE 85

Query: 211 GVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSD-TQT 269
            +     +Y  L++             I         Q  +        MY +  D    
Sbjct: 86  VLRI---NYKFLMSP------------IKTE----QRQPSMMTR-----MYIEQRDRLYN 121

Query: 270 AFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSL-LKPDEYTFAAII--- 325
              VF        VS                 +  ++ LR+  L L+P +     ++   
Sbjct: 122 DNQVFA----KYNVS----------------RLQPYLKLRQALLELRPAKN----VLIDG 157

Query: 326 ---SATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK 382
              S  + +          +  ++   D  +F        +    +  SP+ V  ++ + 
Sbjct: 158 VLGSGKTWVALDV----CLSYKVQCKMDFKIF--------WLNLKNCNSPETVLEMLQK- 204

Query: 383 DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLK----------C----DNFALSGALSA 428
              L  ++    +   D    IKL     +  L+          C     N   + A +A
Sbjct: 205 ---LLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA 261

Query: 429 ----C------ADLAI---LKQGEMIHSQAEKTGHGVE----MSVCGSLVDMYAKNGDLR 471
               C          +   L      H   +     +      S+    +D   +  DL 
Sbjct: 262 FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC--RPQDLP 319

Query: 472 A--------AESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-- 521
                      SI ++ +   L  W+     + H    ++   + E  L   L P E   
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLATWD----NWKHVN-CDKLTTIIESSLNV-LEPAEYRK 373

Query: 522 TF--LSLLSACSH--SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENL 577
            F  LS+    +H  + L+    ++W  + +  ++        +V+ L +  L+++    
Sbjct: 374 MFDRLSVFPPSAHIPTILLS---LIWFDVIKSDVMV-------VVNKLHKYSLVEK---- 419

Query: 578 IAESPYSEIRI-ELWRTLLSTCVAKRNS-RMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635
             +   S I I  ++  L      +    R ++         D +D     L    Y+  
Sbjct: 420 --QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI 477

Query: 636 GRWDCVAKMRRKMKGSMLGKEPG--------LSWIEAKNNVHVFSSGDQSHPKIDDAQAE 687
           G           +K     +             ++E K   H  ++ + S   ++     
Sbjct: 478 G---------HHLKNIEHPERMTLFRMVFLDFRFLEQKIR-HDSTAWNASGSILNT---- 523

Query: 688 LHRLRGNMRKLVTD 701
           L +L+   +  + D
Sbjct: 524 LQQLK-FYKPYICD 536

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 47.5 bits (113), Expect = 1e-05
 Identities = 23/184 (12%), Positives = 60/184 (32%), Gaps = 11/184 (5%)

Query: 464 YAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMA--EEAFMVFEVILEHGLRPDEI 521
           Y    +   A+  + + L  D KC+ A     S++ +   EE  +V ++      + D  
Sbjct: 210 YTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAA 269

Query: 522 TFLSL-LSACSHSGLVERGKILWNQMKEHSLIPGHKH-YSCMVSLLSRAGLLDEAEN--- 576
              SL +   + +   +  +   + +   + +        C    L       +      
Sbjct: 270 FLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITT 329

Query: 577 -LIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT 635
            ++   PY    ++++   L++         +   +  ++   PE   T + +   Y   
Sbjct: 330 KILEIDPY---NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCV 386

Query: 636 GRWD 639
            +  
Sbjct: 387 NKIS 390

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	708
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.95
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.88
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.86
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.84
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.83
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.79
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.79
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.78
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.76
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.76
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.74
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.73
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.73
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.71
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.71
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.71
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.67
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.67
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.65
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.63
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.62
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.6
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.58
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.58
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.56
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.55
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.55
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.54
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.53
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.52
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.52
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.52
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.5
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.49
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.49
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.49
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.49
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.48
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.46
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.46
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.42
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.42
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.42
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.42
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.42
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.39
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.39
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.35
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.32
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.31
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.31
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.31
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.29
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.28
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.26
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.25
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.25
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.24
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.19
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.18
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.17
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.15
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.12
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.11
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.11
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.1
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.09
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.08
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.08
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.07
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.06
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.04
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.02
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.01
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.0
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.0
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.99
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.99
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.97
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.95
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.94
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.93
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.92
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.89
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.88
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.87
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.86
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.86
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.86
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.86
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.85
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.82
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.79
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.77
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.77
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.75
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.74
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.74
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.73
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.73
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.7
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.7
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.7
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.69
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.68
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.68
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.68
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.67
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.67
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.67
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.67
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.67
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.67
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.66
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.65
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.64
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.64
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.62
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.6
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.59
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.58
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.56
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.56
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.53
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.51
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.51
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.51
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.49
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.48
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.48
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.48
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.48
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.47
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.46
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.46
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.46
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.45
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.45
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.37
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.36
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.36
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.35
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.32
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.31
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.3
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.29
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.28
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.28
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.27
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.26
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.26
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.26
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.25
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.24
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.24
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.22
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.22
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.21
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.19
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.18
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.18
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.18
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.16
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.15
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.13
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.09
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.09
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.07
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.07
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.01
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.93
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.92
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.84
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.79
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.79
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.76
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.66
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.58
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.56
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.53
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.48
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.48
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.43
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.41
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.31
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.16
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.06
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.94
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.83
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.75
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.75
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.5
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.47
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.29
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.17
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.15
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.06
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.04
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.87
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.66
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.34
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	95.28
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	94.06
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.54
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.41
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	93.32
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	92.32
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	92.14
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	90.85
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.68
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	90.52
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	90.14
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.94
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	89.17
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	87.78
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	87.12
2p58_C	116	Putative type III secretion protein YSCG; type III	86.79
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	86.44
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	86.26
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.04
2p58_C	116	Putative type III secretion protein YSCG; type III	84.81
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	84.72
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.31
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	81.54
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	81.54
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	81.35
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	80.23

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.5e-41  Score=367.90  Aligned_cols=501  Identities=8%  Similarity=-0.060  Sum_probs=360.2

Q ss_pred             HHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHH
Q 038516           56 SMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGS  135 (708)
Q Consensus        56 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  135 (708)
                      ..+.+.|.+..+...|..++.+++..|+.++..+.+.|+ ++.|+.+|++|..  ..|+..++..++.+|...|+++.|.
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~  137 (597)
T 2xpi_A           61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQ-YKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAK  137 (597)
T ss_dssp             ---------------------CHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccC-chHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHH
Confidence            346678888999999999998899999999999999999 9999999999985  4678899999999999999999999


Q ss_pred             HHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCC-------------------CcccHHHHHHHHhcCCC
Q 038516          136 LLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDK-------------------DAVAWNSIILGNFKNDK  196 (708)
Q Consensus       136 ~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~  196 (708)
                      .+++.+...  +++..+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|+
T Consensus       138 ~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  215 (597)
T 2xpi_A          138 CLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSN  215 (597)
T ss_dssp             HHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCC
Confidence            999987644  688999999999999999999999999964433                   36789999999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCc-chHHHHHHHHhccCChhH--HHHH-HHHHHHhCCCCChhhHHHHHHhcccCCChHHHHH
Q 038516          197 MKEGLSLFGAMVGSGVNPTQ-FSYSMLLNACSRMGNFVC--GKVI-HARVIISNTQVDLPLENALLDMYSKCSDTQTAFS  272 (708)
Q Consensus       197 ~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~--a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  272 (708)
                      +++|+++|++|.+.  .|+. ..+..+...+...+..+.  +..+ +..+...+..+...+++.++..|.+.|++++|.+
T Consensus       216 ~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~  293 (597)
T 2xpi_A          216 FDRAKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED  293 (597)
T ss_dssp             HHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence            99999999999875  3543 334444433332222111  1111 3334333444455566777888888888888888


Q ss_pred             HHhccCC--CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCC
Q 038516          273 VFTRIEN--PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYD  350 (708)
Q Consensus       273 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  350 (708)
                      +|+++.+  ++..+|+.++..|.+.|++++|..+|+++.+.  .+.+..++..++.++...|++++|..+++.+.+.. +
T Consensus       294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~  370 (597)
T 2xpi_A          294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEI--DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-P  370 (597)
T ss_dssp             HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-T
T ss_pred             HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-c
Confidence            8888877  78888888888888888888888888888765  23355566666666666666666666666665433 3


Q ss_pred             CchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHh
Q 038516          351 SSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACA  430 (708)
Q Consensus       351 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~  430 (708)
                      .+..+++                               .++..|.+.|++++|.++|+++.+..  |             
T Consensus       371 ~~~~~~~-------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~--~-------------  404 (597)
T 2xpi_A          371 EKAVTWL-------------------------------AVGIYYLCVNKISEARRYFSKSSTMD--P-------------  404 (597)
T ss_dssp             TSHHHHH-------------------------------HHHHHHHHTTCHHHHHHHHHHHHHHC--T-------------
T ss_pred             ccHHHHH-------------------------------HHHHHHHHhccHHHHHHHHHHHHHhC--C-------------
Confidence            3444444                               44455555556666666666655421  1             


Q ss_pred             CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHH
Q 038516          431 DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMV  507 (708)
Q Consensus       431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~  507 (708)
                                           .+..+++.++.+|.+.|++++|.++|+++.   +.+..+|+.++.+|.+.|++++|.++
T Consensus       405 ---------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  463 (597)
T 2xpi_A          405 ---------------------QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEY  463 (597)
T ss_dssp             ---------------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             ---------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence                                 123344455555555566666666555542   34667788888888888888888888


Q ss_pred             HHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          508 FEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH----SLIPG--HKHYSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       508 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      |+++.+.. +.+..+|..+...|.+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.+.++++
T Consensus       464 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  542 (597)
T 2xpi_A          464 LQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQG  542 (597)
T ss_dssp             HHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            88888753 336777888888888888888888888888765    55777  678999999999999999999999887


Q ss_pred             C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516          582 P-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA  634 (708)
Q Consensus       582 ~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  634 (708)
                      . ..+.+...|..++..|...|++++|...++++++++|+++.++..|+++|..
T Consensus       543 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          543 LLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             HHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            2 3335789999999999999999999999999999999999999999988743

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.1e-40  Score=358.88  Aligned_cols=481  Identities=10%  Similarity=-0.032  Sum_probs=399.4

Q ss_pred             hHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHH
Q 038516          160 YSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIH  239 (708)
Q Consensus       160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  239 (708)
                      +.+.|....+...+..++.++...|+.++..+.+.|++++|+.+|++|..  ..|+..++..++.+|.+.|++++|..++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~  140 (597)
T 2xpi_A           63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL  140 (597)
T ss_dssp             -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence            45667778888888888888899999999999999999999999999985  5678889999999999999999999999


Q ss_pred             HHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCC-------------------ChhHHHHHHHHHHcCCCchH
Q 038516          240 ARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENP-------------------DLVSWNSMIAGYMENGNGEK  300 (708)
Q Consensus       240 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~~  300 (708)
                      +.+...  +++..+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|++++
T Consensus       141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  218 (597)
T 2xpi_A          141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR  218 (597)
T ss_dssp             HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence            987543  678899999999999999999999999965433                   47899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchH--HH-HHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHh
Q 038516          301 AVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGK--PL-HALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFM  377 (708)
Q Consensus       301 A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  377 (708)
                      |.++|++|.+.  .+.+...+..+...+...+..+...  .+ +..+...+..+...+++.++..|.+.|++++|.++|+
T Consensus       219 A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  296 (597)
T 2xpi_A          219 AKECYKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLS  296 (597)
T ss_dssp             HHHHHHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHH
Confidence            99999999986  2334455555554444333222111  11 3344444444556677778889999999999999999


Q ss_pred             hcCC--CCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchh
Q 038516          378 LIAE--KDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMS  455 (708)
Q Consensus       378 ~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  455 (708)
                      ++.+  ++..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..
T Consensus       297 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  374 (597)
T 2xpi_A          297 SINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV  374 (597)
T ss_dssp             TSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred             HhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence            9987  688899999999999999999999999998765 3366788999999999999999999999998654 56788


Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH  532 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  532 (708)
                      +++.++.+|.+.|++++|.++|+++.   +.+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  453 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ  453 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            99999999999999999999999884   4568899999999999999999999999999863 4478889999999999


Q ss_pred             cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCC--HHHHHHHHHHHHhcCC
Q 038516          533 SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIR--IELWRTLLSTCVAKRN  603 (708)
Q Consensus       533 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~--~~~~~~l~~~~~~~~~  603 (708)
                      .|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++++++       +.. |+  ...|..++.+|...|+
T Consensus       454 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~  531 (597)
T 2xpi_A          454 LGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSN-EKPWAATWANLGHAYRKLKM  531 (597)
T ss_dssp             HTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-SGGGHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccc-hhhHHHHHHHHHHHHHHhcC
Confidence            999999999999998742 235788999999999999999999999988       224 55  7899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          604 SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       604 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +++|...++++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus       532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  579 (597)
T 2xpi_A          532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI  579 (597)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999774

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=8.2e-26  Score=232.40  Aligned_cols=375  Identities=11%  Similarity=0.028  Sum_probs=261.5

Q ss_pred             HHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCch
Q 038516          223 LNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGE  299 (708)
Q Consensus       223 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~  299 (708)
                      ...+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++...+   .+..+|..+...|.+.|+++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~   84 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            344556677777777776666553 23344555555556666666666666554432   34455666666666666666


Q ss_pred             HHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhc
Q 038516          300 KAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLI  379 (708)
Q Consensus       300 ~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~  379 (708)
                      +|+..|+++...  .+.+..+|..+..++...|+++.|...+..+.+.. |.                            
T Consensus        85 ~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~----------------------------  133 (388)
T 1w3b_A           85 EAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PD----------------------------  133 (388)
T ss_dssp             HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TT----------------------------
T ss_pred             HHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC----------------------------
Confidence            666666665543  12223334444444444444444444444444332 11                            


Q ss_pred             CCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHH
Q 038516          380 AEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGS  459 (708)
Q Consensus       380 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  459 (708)
                         +...+..+...+...|++++|.+.|+++.+.. +-+..++..+...+...|++++|...++.+.+.+ +.+...+..
T Consensus       134 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~  208 (388)
T 1w3b_A          134 ---LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYIN  208 (388)
T ss_dssp             ---CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             ---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH
Confidence               22334445555566666666666666666542 2234566666667777777777777777776654 345667778


Q ss_pred             HHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCc
Q 038516          460 LVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGL  535 (708)
Q Consensus       460 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~  535 (708)
                      +...+...|++++|...|++..   +.+..+|..+...|...|++++|+..|+++.+.  .| +..++..+...+.+.|+
T Consensus       209 lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~  286 (388)
T 1w3b_A          209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGS  286 (388)
T ss_dssp             HHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCC
Confidence            8888889999999999888764   346788899999999999999999999999985  45 46678888889999999


Q ss_pred             HHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038516          536 VERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQV  614 (708)
Q Consensus       536 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~  614 (708)
                      +++|.+.|+++.+. .+.+..++..++..+.+.|++++|.+.++++.. .|.+...+..++..+...|++++|...++++
T Consensus       287 ~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  365 (388)
T 1w3b_A          287 VAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999999873 234577888999999999999999999998843 3345788999999999999999999999999


Q ss_pred             HhcCCCCcchHHHHHHHHHhcCC
Q 038516          615 LRLDPEDGTTHILLSNLYAATGR  637 (708)
Q Consensus       615 ~~~~p~~~~~~~~l~~~~~~~g~  637 (708)
                      ++++|+++.+|..++.++...|+
T Consensus       366 ~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          366 IRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HhhCCCCHHHHHhHHHHHHHccC
Confidence            99999999999999999887764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=1.7e-25  Score=229.99  Aligned_cols=353  Identities=15%  Similarity=0.103  Sum_probs=295.8

Q ss_pred             HHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCC
Q 038516          289 IAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGD  368 (708)
Q Consensus       289 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  368 (708)
                      ...+.+.|++++|...+..+.+.  .+.+...+..+...+...|+++.+...++...+.. +.+..++..+...|.+.|+
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~   82 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence            44566778888888888777765  34445555666666777788888888877777664 6677788888888888888


Q ss_pred             ChhHHHHHhhcCC--C-CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCH-HHHHHHHHHHhCcccHHHHHHHHHH
Q 038516          369 AESPQKVFMLIAE--K-DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDN-FALSGALSACADLAILKQGEMIHSQ  444 (708)
Q Consensus       369 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~  444 (708)
                      +++|...|+++..  | +...|..+..++.+.|++++|...|+++.+.  .|+. ..+..+...+...|++++|...+..
T Consensus        83 ~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            8888888887653  2 4456888888899999999999999988875  3443 4566677778899999999999999


Q ss_pred             HHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-Ch
Q 038516          445 AEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DE  520 (708)
Q Consensus       445 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~  520 (708)
                      +.+.. +.+...+..+...+.+.|++++|...|+++.   +.+...|..+...+...|++++|+..++++...  .| +.
T Consensus       161 al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~  237 (388)
T 1w3b_A          161 AIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA  237 (388)
T ss_dssp             HHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred             HHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence            98874 4467889999999999999999999999885   346778999999999999999999999999985  56 46


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHH
Q 038516          521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTC  598 (708)
Q Consensus       521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~  598 (708)
                      .++..+..++...|++++|.+.|+++.+.  .|+ ...+..++..+.+.|++++|.+.++++ ...+.+...|..++..+
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHH
Confidence            77888999999999999999999999983  453 678999999999999999999999998 33335788999999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          599 VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       599 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ...|++++|...+++++++.|+++.++..++.+|...|++++|.+.++++.+.
T Consensus       316 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          316 REQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=3.1e-27  Score=246.31  Aligned_cols=212  Identities=15%  Similarity=0.111  Sum_probs=158.4

Q ss_pred             hHHHHHHHHHHHHcCCCCCcc-hHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhc
Q 038516           96 AHLTFRLIDQMEFECLRPNGL-TFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFG  174 (708)
Q Consensus        96 ~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~  174 (708)
                      ...+..+.+++.+++..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.+....+     
T Consensus         6 ~s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~-----   80 (501)
T 4g26_A            6 ASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES-----   80 (501)
T ss_dssp             ------------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS-----
T ss_pred             cchHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh-----
Confidence            455667778888888776554 58889999999999999999999999999999999999999999887754322     


Q ss_pred             cCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhH
Q 038516          175 LIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLE  254 (708)
Q Consensus       175 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  254 (708)
                                       .+.+..+.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|
T Consensus        81 -----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty  143 (501)
T 4g26_A           81 -----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY  143 (501)
T ss_dssp             -----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             -----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence                             234567889999999999999999999999999999999999999999999999998888887


Q ss_pred             HHHHHhcccCCChHHHHHHHhccCC----CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC
Q 038516          255 NALLDMYSKCSDTQTAFSVFTRIEN----PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA  330 (708)
Q Consensus       255 ~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~  330 (708)
                      +.+|.+|++.|++++|.++|++|.+    ||..+|++||.+|++.|++++|.++|++|++. +..|+..||+.++..++.
T Consensus       144 n~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          144 GPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence            7777777777777777777777653    66677777777777777777777777777766 667777777766666554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.95  E-value=1.7e-26  Score=240.61  Aligned_cols=183  Identities=16%  Similarity=0.197  Sum_probs=171.5

Q ss_pred             eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcc---------cHHHHHHHHHHHHHhCCCCchhH
Q 038516          386 LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLA---------ILKQGEMIHSQAEKTGHGVEMSV  456 (708)
Q Consensus       386 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------~~~~a~~~~~~~~~~~~~~~~~~  456 (708)
                      .++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+         .++.|.++++.|...|+.||..+
T Consensus        28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~t  107 (501)
T 4g26_A           28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEAT  107 (501)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHH
Confidence            466778899999999999999999999999999999999999998654         47899999999999999999999


Q ss_pred             HHHHHHhhHhcCCHHHHHHHHhhCC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc
Q 038516          457 CGSLVDMYAKNGDLRAAESIFSQVL----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH  532 (708)
Q Consensus       457 ~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  532 (708)
                      |++|+.+|++.|++++|.++|++|.    .||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|++
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            9999999999999999999999984    699999999999999999999999999999999999999999999999999


Q ss_pred             cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc
Q 038516          533 SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA  568 (708)
Q Consensus       533 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  568 (708)
                      .|++++|.++|++|.+.|..|+..||+.++..+...
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999888753

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.6e-22  Score=216.50  Aligned_cols=437  Identities=11%  Similarity=-0.028  Sum_probs=289.3

Q ss_pred             cHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcc
Q 038516          183 AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYS  262 (708)
Q Consensus       183 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  262 (708)
                      .|......+.+.|++++|+..|+++.+..  |+...+..+..++...|++++|...++.+++.+ +.+...+..+..+|.
T Consensus         8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            45556667777777888888777777643  677777777777777777777777777777654 234445555555555


Q ss_pred             cCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHH
Q 038516          263 KCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKP  339 (708)
Q Consensus       263 ~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~  339 (708)
                      ..|++++|...|+++.+   ++......++..+........+.+.+..+... +..|+...+..-....           
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~-----------  152 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTA-TATPTELSTQPAKERK-----------  152 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-----------------------------------
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhhccCChhhHHH-----------
Confidence            55555555555554432   12222222222222222222222222222211 1111111111000000           


Q ss_pred             HHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC-CEeeehhhHHHHh---cCCChHHHHHHHHHHhH---
Q 038516          340 LHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK-DIVLWTEMIIGHS---RMGDGECAIKLFCKMCR---  412 (708)
Q Consensus       340 ~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~---~~~~~~~A~~~~~~m~~---  412 (708)
                           ......|+....    ..+..........   ..+..+ +...+......+.   +.|++++|...|+++.+   
T Consensus       153 -----~~~~~~~~~~~~----~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~  220 (514)
T 2gw1_A          153 -----DKQENLPSVTSM----ASFFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFE  220 (514)
T ss_dssp             ---------CCCCHHHH----HHHHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHH
T ss_pred             -----hhccCCchhHHH----HHHHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhh
Confidence                 000011111111    1111111100000   000011 1223333334344   38999999999999887   


Q ss_pred             --CCCc--------cCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-
Q 038516          413 --EGLK--------CDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-  481 (708)
Q Consensus       413 --~g~~--------p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-  481 (708)
                        ..-.        .+..++..+...+...|++++|...++.+.+....  ...+..+...+...|++++|...|+.+. 
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  298 (514)
T 2gw1_A          221 EQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALK  298 (514)
T ss_dssp             HHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHT
T ss_pred             hhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhh
Confidence              3112        23456777778888999999999999999887644  8888899999999999999999999874 


Q ss_pred             --CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHH
Q 038516          482 --HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYS  559 (708)
Q Consensus       482 --~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~  559 (708)
                        +.+...|..+...|...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus       299 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  376 (514)
T 2gw1_A          299 LDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPN  376 (514)
T ss_dssp             TCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHH
T ss_pred             cCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHH
Confidence              3467889999999999999999999999999853 2356778888889999999999999999998741 22467888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC----CCCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516          560 CMVSLLSRAGLLDEAENLIAES----PYSEIR----IELWRTLLSTCVA---KRNSRMVIQAAEQVLRLDPEDGTTHILL  628 (708)
Q Consensus       560 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~l  628 (708)
                      .++..+.+.|++++|...++++    +.. ++    ...|..++..+..   .|++++|...++++++.+|+++.++..+
T Consensus       377 ~la~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l  455 (514)
T 2gw1_A          377 FFAEILTDKNDFDKALKQYDLAIELENKL-DGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGL  455 (514)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTS-SSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhhhcc-chHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence            9999999999999999999887    222 22    3488899999999   9999999999999999999999999999


Q ss_pred             HHHHHhcCCchHHHHHHHHHhcC
Q 038516          629 SNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       629 ~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +.+|...|++++|...++++.+.
T Consensus       456 a~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          456 AQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHh
Confidence            99999999999999999998774

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.91  E-value=7.4e-23  Score=219.01  Aligned_cols=447  Identities=10%  Similarity=-0.052  Sum_probs=312.8

Q ss_pred             hhHHhHHHHHhHhCCChhHHHHHhccCCC--CCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHh
Q 038516          150 TCVQTSLLGMYSNCGDFESAKRIFGLIGD--KDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACS  227 (708)
Q Consensus       150 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  227 (708)
                      ...+..+...+.+.|++++|+..|+.+..  |+..+|..+..++.+.|++++|++.++++.+.+ +.+...+..+..++.
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence            45677788899999999999999998764  788899999999999999999999999998853 224568899999999


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC----CChhHHHHHHHHHHcCCCchHHHH
Q 038516          228 RMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN----PDLVSWNSMIAGYMENGNGEKAVD  303 (708)
Q Consensus       228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~  303 (708)
                      ..|++++|...|+.+.+.+. ++......++..+........+.+.+..+..    ++...+..-.......        
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--------  155 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ--------  155 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred             HHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc--------
Confidence            99999999999999998863 4444555555544433333333332222221    1111111110000111        


Q ss_pred             HHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHh---cCCChhHHHHHhhcC
Q 038516          304 MFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFK---NGDAESPQKVFMLIA  380 (708)
Q Consensus       304 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---~g~~~~A~~~~~~~~  380 (708)
                               ...|+.......+..+.........          .-+.+...+..+...+..   .|++++|...|+.+.
T Consensus       156 ---------~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  216 (514)
T 2gw1_A          156 ---------ENLPSVTSMASFFGIFKPELTFANY----------DESNEADKELMNGLSNLYKRSPESYDKADESFTKAA  216 (514)
T ss_dssp             ----------CCCCHHHHHHHHTTSCCCCCCSSC----------CSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred             ---------cCCchhHHHHHHHhhcCHHHHHHHh----------cCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence                     1233333322222211111111000          001223333333333332   556666666655543


Q ss_pred             C----------------C-CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHH
Q 038516          381 E----------------K-DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHS  443 (708)
Q Consensus       381 ~----------------~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  443 (708)
                      +                + +..++..+...+...|++++|...|+++.+...  +...+..+...+...|++++|...++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~  294 (514)
T 2gw1_A          217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFD  294 (514)
T ss_dssp             HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHH
T ss_pred             HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            3                1 234566677778888888888888888877543  36677777888888888888888888


Q ss_pred             HHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh
Q 038516          444 QAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE  520 (708)
Q Consensus       444 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  520 (708)
                      .+.+.. +.+...+..+...+...|++++|...|+.+.   +.+...+..+...+...|++++|...++++.+.. +.+.
T Consensus       295 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~  372 (514)
T 2gw1_A          295 KALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAP  372 (514)
T ss_dssp             HHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCS
T ss_pred             HHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCH
Confidence            877654 4456778889999999999999999998874   4467889999999999999999999999999852 3356


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcC----hHHHHHHHHHHHh---cCCHHHHHHHHHhC-CCCCCCHHHH
Q 038516          521 ITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPG----HKHYSCMVSLLSR---AGLLDEAENLIAES-PYSEIRIELW  591 (708)
Q Consensus       521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~~~~~~~~  591 (708)
                      ..+..+...+...|++++|...++++.+. .-.++    ...+..++..+..   .|++++|...++++ ...+.+...+
T Consensus       373 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~  452 (514)
T 2gw1_A          373 EVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAK  452 (514)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHH
Confidence            77888888999999999999999999874 11222    3478889999999   99999999999987 2233468889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516          592 RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLS  629 (708)
Q Consensus       592 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  629 (708)
                      ..++..+...|++++|...++++++++|+++..+..+.
T Consensus       453 ~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  490 (514)
T 2gw1_A          453 IGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT  490 (514)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            99999999999999999999999999999988777664

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=5.7e-22  Score=208.20  Aligned_cols=335  Identities=12%  Similarity=0.059  Sum_probs=234.6

Q ss_pred             hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHH
Q 038516          282 LVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLN  361 (708)
Q Consensus       282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  361 (708)
                      ...+..+...+.+.|++++|+.+|+++.+.  .+.+...+..+..++...|+++.|...++.+.+.+ +.+..++..+..
T Consensus        26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           26 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            345556666666666666666666666654  33445555556666666666666666666665554 334455555555


Q ss_pred             HHHhcCCChhHHHHHhhcCCCCE------eeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccH
Q 038516          362 MYFKNGDAESPQKVFMLIAEKDI------VLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAIL  435 (708)
Q Consensus       362 ~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~  435 (708)
                      +|.+.|++++|...|+.+.+.++      ..+..++..+..                       ..+......+...|++
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~~~~  159 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGSGDY  159 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTCH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHcCCH
Confidence            55555555555555555443221      222222211100                       0111122234456666


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038516          436 KQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVIL  512 (708)
Q Consensus       436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  512 (708)
                      ++|...++.+.+.. +.+..++..+..+|.+.|++++|.+.|+++.   +.+..+|..++..|...|++++|+..|+++.
T Consensus       160 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  238 (450)
T 2y4t_A          160 TAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECL  238 (450)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            66666666665543 4466777888889999999999999998875   4578899999999999999999999999999


Q ss_pred             HCCCCCChHH-HHHH------------HHHHhccCcHHHHHHHHHHhhHCCCCcC-----hHHHHHHHHHHHhcCCHHHH
Q 038516          513 EHGLRPDEIT-FLSL------------LSACSHSGLVERGKILWNQMKEHSLIPG-----HKHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       513 ~~g~~p~~~~-~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A  574 (708)
                      ..  .|+... +..+            ...|.+.|++++|...|+++.+  ..|+     ...+..++.++.+.|++++|
T Consensus       239 ~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A  314 (450)
T 2y4t_A          239 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEA  314 (450)
T ss_dssp             HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             Hh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHH
Confidence            74  565443 4333            6789999999999999999987  3454     45788899999999999999


Q ss_pred             HHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH------------HHhcC-----
Q 038516          575 ENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNL------------YAATG-----  636 (708)
Q Consensus       575 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g-----  636 (708)
                      ...++++ ...+.+...|..++.+|...|++++|...++++++++|+++.++..++.+            |...|     
T Consensus       315 ~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~  394 (450)
T 2y4t_A          315 IRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA  394 (450)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence            9999997 33435789999999999999999999999999999999999999999944            55555     


Q ss_pred             CchHHHHHHHH
Q 038516          637 RWDCVAKMRRK  647 (708)
Q Consensus       637 ~~~eA~~~~~~  647 (708)
                      +.+++.+.+++
T Consensus       395 ~~~~~~~~y~~  405 (450)
T 2y4t_A          395 KKQEIIKAYRK  405 (450)
T ss_dssp             CTTHHHHHHHH
T ss_pred             CHHHHHHHHHH
Confidence            55666777765

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=3.6e-21  Score=207.16  Aligned_cols=421  Identities=11%  Similarity=0.006  Sum_probs=280.9

Q ss_pred             ccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhc
Q 038516          182 VAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMY  261 (708)
Q Consensus       182 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  261 (708)
                      ..|..+...+.+.|++++|++.|+++.+.. +.+...+..+..++...|++++|...++.+++.+ +.+...+..+..++
T Consensus        26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  103 (537)
T 3fp2_A           26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence            456666777888888888888888887743 2356677777888888888888888888888765 34566777777778


Q ss_pred             ccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHc-----CCCCCCHhHHHHHHHHHcCCCCccc
Q 038516          262 SKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRM-----SLLKPDEYTFAAIISATSALPASAY  336 (708)
Q Consensus       262 ~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~~~~p~~~t~~~ll~~~~~~~~~~~  336 (708)
                      ...|++++|...|+.+.. +.......+..+...+....|...++.+...     ....|+.....              
T Consensus       104 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~--------------  168 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA--------------  168 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHH--------------
T ss_pred             HHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHH--------------
Confidence            888888888887764422 2222222334444455556677777766432     01122222222              


Q ss_pred             hHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEe---eehhhHHHHhc--------CCChHHHHH
Q 038516          337 GKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIV---LWTEMIIGHSR--------MGDGECAIK  405 (708)
Q Consensus       337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~A~~  405 (708)
                                               .+....+.+.+...+......+..   ....+...+..        .|++++|..
T Consensus       169 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~  223 (537)
T 3fp2_A          169 -------------------------SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTD  223 (537)
T ss_dssp             -------------------------HHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHH
T ss_pred             -------------------------HHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence                                     222233333333332222222111   11122222211        246777888


Q ss_pred             HHHHHhHCCCccCH--------HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHH
Q 038516          406 LFCKMCREGLKCDN--------FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIF  477 (708)
Q Consensus       406 ~~~~m~~~g~~p~~--------~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  477 (708)
                      +++++.+..  |+.        .++..+...+...|++++|...+..+.+..  |+...+..+...+...|++++|...|
T Consensus       224 ~~~~~l~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~  299 (537)
T 3fp2_A          224 MYHSLLSAN--TVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFF  299 (537)
T ss_dssp             HHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHH
T ss_pred             HHHHHHHHC--CCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHH
Confidence            887777543  331        234555566677788888888888887764  34677778888888888888888888


Q ss_pred             hhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc
Q 038516          478 SQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP  553 (708)
Q Consensus       478 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p  553 (708)
                      +.+.   +.+..+|..+...+...|++++|...++++.+.  .| +...+..+...+...|++++|...++++.+.. +.
T Consensus       300 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~  376 (537)
T 3fp2_A          300 QKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PT  376 (537)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence            8774   346778888888888999999999999988885  34 45677778888888999999999998888732 22


Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCC---CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHh
Q 038516          554 GHKHYSCMVSLLSRAGLLDEAENLIAES----PYS---EIRIELWRTLLSTCVAK----------RNSRMVIQAAEQVLR  616 (708)
Q Consensus       554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~---~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~  616 (708)
                      +...+..++..+...|++++|...++++    +..   ......+..+...+...          |++++|...++++++
T Consensus       377 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~  456 (537)
T 3fp2_A          377 LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE  456 (537)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence            3667888888899999999999888876    111   01222344455666666          899999999999999


Q ss_pred             cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          617 LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       617 ~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      .+|+++.++..++.+|...|++++|.+.++++.+.
T Consensus       457 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          457 LDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999888764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.88  E-value=1.1e-20  Score=198.31  Aligned_cols=308  Identities=11%  Similarity=0.020  Sum_probs=230.2

Q ss_pred             CCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC---CCEeeehhhH
Q 038516          315 KPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE---KDIVLWTEMI  391 (708)
Q Consensus       315 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li  391 (708)
                      +.+...+..+...+...|+++.|..+|+.+.+.. +.+..++..+..+|...|++++|...|+.+.+   .+..++..+.
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  101 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG  101 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence            3445556666666667777777777777666553 44566666666666666777666666665543   2345566666


Q ss_pred             HHHhcCCChHHHHHHHHHHhHCCCccCH----HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc
Q 038516          392 IGHSRMGDGECAIKLFCKMCREGLKCDN----FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKN  467 (708)
Q Consensus       392 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  467 (708)
                      ..|.+.|++++|...|+++.+.  .|+.    ..+..+...+..                       ..+..+...+...
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~  156 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEM-----------------------QRLRSQALNAFGS  156 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHc
Confidence            6666666666666666666553  2332    222222222111                       1122345568889


Q ss_pred             CCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 038516          468 GDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWN  544 (708)
Q Consensus       468 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  544 (708)
                      |++++|...|+.+.   +.+...+..++.+|...|++++|+..|+++.+.. +.+..++..+...+...|++++|...|+
T Consensus       157 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  235 (450)
T 2y4t_A          157 GDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVR  235 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            99999999999885   4578899999999999999999999999999852 3467889999999999999999999999


Q ss_pred             HhhHCCCCcC-hHHHHHH------------HHHHHhcCCHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhcCCHHH
Q 038516          545 QMKEHSLIPG-HKHYSCM------------VSLLSRAGLLDEAENLIAESPYSEIR-----IELWRTLLSTCVAKRNSRM  606 (708)
Q Consensus       545 ~~~~~~~~p~-~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~  606 (708)
                      ++.+  ..|+ ...+..+            +..+.+.|++++|...++++....|+     ...+..++..+...|++++
T Consensus       236 ~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~  313 (450)
T 2y4t_A          236 ECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE  313 (450)
T ss_dssp             HHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence            9987  4454 3344444            88999999999999999998222233     3468888889999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          607 VIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       607 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      |+..++++++++|+++.+|..++.+|...|++++|.+.++++.+.
T Consensus       314 A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          314 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999874

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.86  E-value=8e-19  Score=188.77  Aligned_cols=445  Identities=10%  Similarity=-0.047  Sum_probs=268.4

Q ss_pred             cHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHh
Q 038516           81 SYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMY  160 (708)
Q Consensus        81 ~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~  160 (708)
                      .|..+-..+.+.|+ ++.|+..|+++.+.. +.+..++..+...+...|+++.|.+.++.+++.. +.+...+..+..+|
T Consensus        27 ~~~~~g~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~  103 (537)
T 3fp2_A           27 QLKNRGNHFFTAKN-FNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHTTC-CC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc-HHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence            44555556666666 666666666666542 2344556666666666666666666666666654 23455556666666


Q ss_pred             HhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHH
Q 038516          161 SNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHA  240 (708)
Q Consensus       161 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  240 (708)
                      ...|++++|.+.|+.+.. +....+..+..+...+....|...++.+....  |+.                        
T Consensus       104 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~------------------------  156 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGR------------------------  156 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------------------------------
T ss_pred             HHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--ccc------------------------
Confidence            666666666666643321 11111112222333333445555555554321  000                        


Q ss_pred             HHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChh---HHHHHHHHHHcC--------CCchHHHHHHHHHH
Q 038516          241 RVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLV---SWNSMIAGYMEN--------GNGEKAVDMFVALR  309 (708)
Q Consensus       241 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~A~~~~~~m~  309 (708)
                         .....|+.    ..+..+....+.+.+...+......+..   ....+...+...        |++++|..+|+++.
T Consensus       157 ---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l  229 (537)
T 3fp2_A          157 ---GSQVLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLL  229 (537)
T ss_dssp             -----CCCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---cccccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence               00011221    2222233344555555555555443322   223333332222        35666666666665


Q ss_pred             HcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehh
Q 038516          310 RMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTE  389 (708)
Q Consensus       310 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  389 (708)
                      +.   .|+                                  +..++..+..++                        ..
T Consensus       230 ~~---~p~----------------------------------~~~~~~~~~~~~------------------------~~  248 (537)
T 3fp2_A          230 SA---NTV----------------------------------DDPLRENAALAL------------------------CY  248 (537)
T ss_dssp             C-----CC----------------------------------CHHHHHHHHHHH------------------------HH
T ss_pred             HH---CCC----------------------------------cchhhHHHHHHH------------------------HH
Confidence            43   122                                  111111111111                        12


Q ss_pred             hHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516          390 MIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD  469 (708)
Q Consensus       390 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  469 (708)
                      +...+...|++++|...|++..+.  .|+...+..+...+...|++++|...+..+.+.. +.+..++..+...+...|+
T Consensus       249 ~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  325 (537)
T 3fp2_A          249 TGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQD  325 (537)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCC
Confidence            233445556666666666666554  3445566666666677777777777777666654 3456778888888899999


Q ss_pred             HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 038516          470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQM  546 (708)
Q Consensus       470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  546 (708)
                      +++|...|+++.   +.+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++
T Consensus       326 ~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  404 (537)
T 3fp2_A          326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA  404 (537)
T ss_dssp             HHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            999999998874   3457789999999999999999999999999862 334667888888999999999999999998


Q ss_pred             hHCC-----CCcChHHHHHHHHHHHhc----------CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038516          547 KEHS-----LIPGHKHYSCMVSLLSRA----------GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQA  610 (708)
Q Consensus       547 ~~~~-----~~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  610 (708)
                      .+..     .......+..++..+.+.          |++++|...++++ ...+.+...+..++..+...|++++|...
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  484 (537)
T 3fp2_A          405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL  484 (537)
T ss_dssp             HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence            7641     111223345566778888          9999999999988 23335688899999999999999999999


Q ss_pred             HHHHHhcCCCCcchHHH
Q 038516          611 AEQVLRLDPEDGTTHIL  627 (708)
Q Consensus       611 ~~~~~~~~p~~~~~~~~  627 (708)
                      +++++++.|++......
T Consensus       485 ~~~al~~~~~~~~~~~~  501 (537)
T 3fp2_A          485 FEDSAILARTMDEKLQA  501 (537)
T ss_dssp             HHHHHHHC--CHHHHHH
T ss_pred             HHHHHHhCCCcHHHHHH
Confidence            99999999998775443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=1.1e-18  Score=176.99  Aligned_cols=328  Identities=11%  Similarity=0.018  Sum_probs=244.5

Q ss_pred             CHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC---CCEeeehhhHHH
Q 038516          317 DEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE---KDIVLWTEMIIG  393 (708)
Q Consensus       317 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~  393 (708)
                      |...+..+...+...|+++.|...++.+.+.. +.+..++..+...+...|++++|...++.+.+   .+...|..+...
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence            34566677777888888888888888888765 55677788888888888888888888877653   245667777778


Q ss_pred             HhcCCChHHHHHHHHHHhHCCCcc---CHH-HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516          394 HSRMGDGECAIKLFCKMCREGLKC---DNF-ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD  469 (708)
Q Consensus       394 ~~~~~~~~~A~~~~~~m~~~g~~p---~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  469 (708)
                      +...|++++|...|++..+.  .|   +.. .+..+...       ..                ...+..+...+...|+
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~  135 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGAD  135 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTC
T ss_pred             HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccC
Confidence            88888888888888877764  33   221 11111110       00                1112234567778888


Q ss_pred             HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 038516          470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQM  546 (708)
Q Consensus       470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  546 (708)
                      +++|.+.|+++.   +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus       136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            888888888774   4567788888888889999999999999888852 335667778888888889999999999888


Q ss_pred             hHCCCCcC-hHHHH------------HHHHHHHhcCCHHHHHHHHHhCCCCCC-CH----HHHHHHHHHHHhcCCHHHHH
Q 038516          547 KEHSLIPG-HKHYS------------CMVSLLSRAGLLDEAENLIAESPYSEI-RI----ELWRTLLSTCVAKRNSRMVI  608 (708)
Q Consensus       547 ~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~l~~~~~~~~~~~~a~  608 (708)
                      .+.  .|+ ...+.            .++..+.+.|++++|...++++....| +.    ..+..+...+...|++++|.
T Consensus       215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHH
Confidence            863  333 22222            336779999999999999988722113 33    23556778889999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHH
Q 038516          609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAEL  688 (708)
Q Consensus       609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  688 (708)
                      ..++++++.+|+++.++..++.+|...|++++|.+.++++.+.                          .|...++...+
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~--------------------------~p~~~~~~~~l  346 (359)
T 3ieg_A          293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH--------------------------NENDQQIREGL  346 (359)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--------------------------CTTCHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------------CCCChHHHHHH
Confidence            9999999999999999999999999999999999999998864                          56667777778


Q ss_pred             HHHHHHHHhhh
Q 038516          689 HRLRGNMRKLV  699 (708)
Q Consensus       689 ~~l~~~~~~~~  699 (708)
                      .++...+++..
T Consensus       347 ~~~~~~~~~~~  357 (359)
T 3ieg_A          347 EKAQRLLKQSQ  357 (359)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhc
Confidence            87777777654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.84  E-value=4.3e-16  Score=171.52  Aligned_cols=552  Identities=13%  Similarity=0.109  Sum_probs=317.8

Q ss_pred             CcchhhHHHHHHhccCChHHHHHHhhcCCC-------CCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHH
Q 038516           47 SPYMYNNVLSMYGRCGSIRDARQVFDEIPK-------RSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFT  119 (708)
Q Consensus        47 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  119 (708)
                      +.+-+..+...|-++|-++.|++.+..+..       .....-..++..+.+ -. .+.++++++.|...+++.|-....
T Consensus       606 thyd~~~IA~LCE~aGl~qrale~y~d~~dikR~~~~~~~~~~~~l~~~fg~-l~-~~~s~~~l~~~l~~n~~qnlq~vv  683 (1630)
T 1xi4_A          606 THYDRAHIAQLCEKAGLLQRALEHFTDLYDIKRAVVHTHLLNPEWLVNYFGS-LS-VEDSLECLRAMLSANIRQNLQICV  683 (1630)
T ss_pred             ccccHHHHHHHHHHcCcHHHHHHhcCCHHHHHHHhhccCcCCHHHHHHHHhc-CC-HHHHHHHHHHHHHHhHhhhhhhhh
Confidence            445677888899999999999999987641       122233345544544 55 899999999999876665544333


Q ss_pred             HHHHHhccccchHHHHHHHHHHHHh-----------CCCCchhHHhHHHHHhHhCCChhHHHHHhccCCC----------
Q 038516          120 SLAQAVSLLEDQLMGSLLHAQVIKY-----------GSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD----------  178 (708)
Q Consensus       120 ~ll~~~~~~~~~~~a~~~~~~~~~~-----------g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----------  178 (708)
                      .+..-|...=..+...++|+.....           .+.-|+.+....|.++++.|++.+.+++.++-.-          
T Consensus       684 qva~ky~~~lg~~~li~~fe~~~~~egl~y~l~siv~~s~d~~vhfkyi~aa~~~~q~~everi~res~~y~~e~vk~fl  763 (1630)
T 1xi4_A          684 QVASKYHEQLSTQSLIELFESFKSFEGLFYFLGSIVNFSQDPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFL  763 (1630)
T ss_pred             hHHHHHHhhcCHHHHHHHHHHhcchhhHHHHHHhhccccCChHHHHHHHHHHHHhCCchhhhHHhccCCCCCHHHHHHHH
Confidence            3333333222233333333333221           2356888889999999999999988887654210          


Q ss_pred             -----CCc----------------c------cHHHHHHHHhcC-------------------------------------
Q 038516          179 -----KDA----------------V------AWNSIILGNFKN-------------------------------------  194 (708)
Q Consensus       179 -----~~~----------------~------~~~~li~~~~~~-------------------------------------  194 (708)
                           +|.                .      .....|.+|++.                                     
T Consensus       764 k~~kl~d~~pli~vCdr~~~v~~l~~yLy~n~~~~~ie~yv~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~  843 (1630)
T 1xi4_A          764 KEAKLTDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTD  843 (1630)
T ss_pred             hhCCCCCCCCceeeccccccHHHHHHHHHhcCchhHHHHHHhccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHH
Confidence                 110                0      000112222211                                     


Q ss_pred             ---------CChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCC-hh-------------------------------
Q 038516          195 ---------DKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGN-FV-------------------------------  233 (708)
Q Consensus       195 ---------g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~-------------------------------  233 (708)
                               ++..--+..++.....| ..+..+++.|...|...++ .+                               
T Consensus       844 ~lv~~~ekrnrLkll~p~LE~~~~~g-~~~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la~iay~  922 (1630)
T 1xi4_A          844 ELVAEVEKRNRLKLLLPWLEARIHEG-CEEPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLACVAYE  922 (1630)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchHHHHhc
Confidence                     11111222233333444 3355667776665543221 10                               


Q ss_pred             --------------------HHH--------HHH---------------HHHHHhC--CCCChhhHHHHHHhcccCCChH
Q 038516          234 --------------------CGK--------VIH---------------ARVIISN--TQVDLPLENALLDMYSKCSDTQ  268 (708)
Q Consensus       234 --------------------~a~--------~~~---------------~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~  268 (708)
                                          .|+        ++|               ++.....  -..++.-....+.+|...|...
T Consensus       923 ~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~~n~~RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~ 1002 (1630)
T 1xi4_A          923 RGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLESNPYRRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPN 1002 (1630)
T ss_pred             ccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcCCcHHHHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHH
Confidence                                011        111               1111111  1123333455677888999999


Q ss_pred             HHHHHHhccCC-CC-----hhHHHHHHHH---------------------------HHcCCCchHHHHHHHHHHHcCCCC
Q 038516          269 TAFSVFTRIEN-PD-----LVSWNSMIAG---------------------------YMENGNGEKAVDMFVALRRMSLLK  315 (708)
Q Consensus       269 ~a~~~~~~~~~-~~-----~~~~~~li~~---------------------------~~~~g~~~~A~~~~~~m~~~~~~~  315 (708)
                      +|.++++++.- ++     ...-+.++.+                           +...|.+++|..+|++...     
T Consensus      1003 EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa~~----- 1077 (1630)
T 1xi4_A         1003 ELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKFDV----- 1077 (1630)
T ss_pred             HHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHcCC-----
Confidence            99999998863 22     1233334433                           3444455555555544310     


Q ss_pred             CCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHh
Q 038516          316 PDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHS  395 (708)
Q Consensus       316 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~  395 (708)
                       .......++.   ..+++++|.++.+..      .+..+|..+..++.+.|++++|.+.|...  .|...|..++..+.
T Consensus      1078 -~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA--dD~say~eVa~~~~ 1145 (1630)
T 1xi4_A         1078 -NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAAN 1145 (1630)
T ss_pred             -HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc--CChHHHHHHHHHHH
Confidence             0111111111   334444444444422      23556666666666666666666666443  45555566666666


Q ss_pred             cCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHH
Q 038516          396 RMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAES  475 (708)
Q Consensus       396 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  475 (708)
                      +.|++++|.+.|...++..  ++....+.+..+|++.++++....+..       .++...+..+...|...|++++|..
T Consensus      1146 ~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~ 1216 (1630)
T 1xi4_A         1146 TSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKL 1216 (1630)
T ss_pred             HcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence            6666666666666555433  222222235556666666654333321       2334445556666667777777777


Q ss_pred             HHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh
Q 038516          476 IFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH  555 (708)
Q Consensus       476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~  555 (708)
                      +|...     ..|..+..+|.+.|++++|++.+++.      .+..+|..+-.+|...|++..|......     +..++
T Consensus      1217 ~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~ 1280 (1630)
T 1xi4_A         1217 LYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHA 1280 (1630)
T ss_pred             HHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCH
Confidence            77653     46677777777777777777777665      2446666666677777776666665443     23455


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhcCC-----CCcchHHH
Q 038516          556 KHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVA--KRNSRMVIQAAEQVLRLDP-----EDGTTHIL  627 (708)
Q Consensus       556 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~p-----~~~~~~~~  627 (708)
                      ..+..++..|.+.|.+++|..+++... ..+.....|..+...+.+  -++..++.+.|..-..+.|     +++..|..
T Consensus      1281 deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~e 1360 (1630)
T 1xi4_A         1281 DELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAE 1360 (1630)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHH
Confidence            667788888999999999999997773 232345567666666665  4577778888887777777     67778899


Q ss_pred             HHHHHHhcCCchHHHH
Q 038516          628 LSNLYAATGRWDCVAK  643 (708)
Q Consensus       628 l~~~~~~~g~~~eA~~  643 (708)
                      ++-+|.+.|+|+.|..
T Consensus      1361 lv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1361 LVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHhcccHHHHHH
Confidence            9999999999999884

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.83  E-value=3.5e-18  Score=173.14  Aligned_cols=323  Identities=11%  Similarity=0.030  Sum_probs=232.3

Q ss_pred             hhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHH
Q 038516          282 LVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLN  361 (708)
Q Consensus       282 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  361 (708)
                      +..+..+...+...|++++|+..|+++.+.  .+.+...+..+...+...|+++.|...++.+.+.. +.+...+..+..
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            445666666777777777777777777664  34456666667777777777777777777777664 445667777778


Q ss_pred             HHHhcCCChhHHHHHhhcCCCCE---e---eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccH
Q 038516          362 MYFKNGDAESPQKVFMLIAEKDI---V---LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAIL  435 (708)
Q Consensus       362 ~~~~~g~~~~A~~~~~~~~~~~~---~---~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~  435 (708)
                      ++...|++++|...|+.+.+.++   .   .+..+...       ..                ...+......+...|++
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~----------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKA-------DE----------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHH-------HH----------------HHHHHHHHHHHHHccCH
Confidence            88888888888888877655332   1   11111100       00                01122233344555666


Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038516          436 KQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVIL  512 (708)
Q Consensus       436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  512 (708)
                      ++|..++..+.+.. +.+...+..+...+...|++++|...++.+.   +.+...|..+...+...|++++|...++++.
T Consensus       137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            66666666655543 3456677788888889999999999988774   3567888999999999999999999999999


Q ss_pred             HCCCCCCh-HHHH------------HHHHHHhccCcHHHHHHHHHHhhHCCCCcCh-----HHHHHHHHHHHhcCCHHHH
Q 038516          513 EHGLRPDE-ITFL------------SLLSACSHSGLVERGKILWNQMKEHSLIPGH-----KHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       513 ~~g~~p~~-~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A  574 (708)
                      +.  .|+. ..+.            .+...+...|++++|...++++.+.  .|+.     ..+..++..+...|++++|
T Consensus       216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A  291 (359)
T 3ieg_A          216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA  291 (359)
T ss_dssp             HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence            85  4543 3332            2255688999999999999999874  3332     3355688999999999999


Q ss_pred             HHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516          575 ENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       575 ~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  635 (708)
                      ...++++. ..+.++..|..++..+...|++++|...++++++++|+++.++..+..++...
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            99999882 23347889999999999999999999999999999999999888888776553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=3.4e-15  Score=164.56  Aligned_cols=558  Identities=13%  Similarity=0.093  Sum_probs=349.8

Q ss_pred             HHHHHHHhccCChHHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCC-hHHHHHH---hhc------CCCCCcc--
Q 038516           13 ATLIQICASITSLKRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGS-IRDARQV---FDE------IPKRSLV--   80 (708)
Q Consensus        13 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~A~~~---~~~------~~~~~~~--   80 (708)
                      ..|+..+-+..++..-..+++.-+..|..     ++.++|+|...|...++ ++.-+.-   ++.      ..++|+.  
T Consensus       843 ~~lv~~~ekrnrLkll~p~LE~~~~~g~~-----~~~~hnalakiyid~n~npe~fL~~n~~yd~~~vgkyce~rDp~la  917 (1630)
T 1xi4_A          843 DELVAEVEKRNRLKLLLPWLEARIHEGCE-----EPATHNALAKIYIDSNNNPERFLRENPYYDSRVVGKYCEKRDPHLA  917 (1630)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----CHHHHHHHHHHHhccCCCHHHHhhccCcccHHHHHHHHHhcCcchH
Confidence            45566666666677777778888888876     88999999999997664 3332211   000      0112211  


Q ss_pred             --------cHHHHHHHHHhCCCChHH-HHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHHHHHHHhCC--CCc
Q 038516           81 --------SYNALIAAYSRDHDHAHL-TFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLHAQVIKYGS--SED  149 (708)
Q Consensus        81 --------~~~~ll~~~~~~~~~~~~-a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~g~--~~~  149 (708)
                              .-.-||+..-+++- ++. |.-+++       +-|...|..+|.     .+-+.-+++.++.....+  ..+
T Consensus       918 ~iay~~g~~d~eli~vt~~n~l-~k~~arylv~-------r~d~~lW~~vl~-----~~n~~RR~Lidqv~a~aL~e~~~  984 (1630)
T 1xi4_A          918 CVAYERGQCDLELINVCNENSL-FKSLSRYLVR-------RKDPELWGSVLL-----ESNPYRRPLIDQVVQTALSETQD  984 (1630)
T ss_pred             HHHhcccCCcHHHHHHHhcchh-HHHHHHHHHH-------hcCHHHHHHHhc-----CCcHHHHHHHHHHHHhhcccccC
Confidence                    11223333333333 221 211111       124445554442     112233445555555443  244


Q ss_pred             hhHHhHHHHHhHhCCChhHHHHHhccCCC-C-----CcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHH
Q 038516          150 TCVQTSLLGMYSNCGDFESAKRIFGLIGD-K-----DAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLL  223 (708)
Q Consensus       150 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  223 (708)
                      +.--+..+..|...|...+|+++++...- +     +...-+.++.+..+. +..+..+..++...       .....+.
T Consensus       985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~-------~d~~eIA 1056 (1630)
T 1xi4_A          985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDN-------YDAPDIA 1056 (1630)
T ss_pred             HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhh-------ccHHHHH
Confidence            55557778888888888888888887653 2     224556666666665 44555555555431       1133466


Q ss_pred             HHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHH
Q 038516          224 NACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVD  303 (708)
Q Consensus       224 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  303 (708)
                      ..+...|.+++|..+|++..     ......+.++.   ..|++++|.++.++..  +..+|..+..++...|++++|++
T Consensus      1057 ~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A         1057 NIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence            67778888888888888752     11222233322   6678888888888774  35677888888888888888888


Q ss_pred             HHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCC
Q 038516          304 MFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKD  383 (708)
Q Consensus       304 ~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~  383 (708)
                      .|.+.       -|...|..++.+|.+.|+++++.+.+...++..  ++..+.+.++.+|++.+++++...+.   ..++
T Consensus      1127 sYiKA-------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI---~~~n 1194 (1630)
T 1xi4_A         1127 SYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI---NGPN 1194 (1630)
T ss_pred             HHHhc-------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH---hCCC
Confidence            88543       466777888888888888888888888777654  33333445888888888887644443   3344


Q ss_pred             EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHh
Q 038516          384 IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDM  463 (708)
Q Consensus       384 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  463 (708)
                      ...|..+...|...|++++|..+|...         ..|..+...+.+.|+++.|.+.++..      .+..+|..+..+
T Consensus      1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A         1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence            455667888888888888888888774         37788888888888888888888765      455777778888


Q ss_pred             hHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHh--ccCcHHHHH
Q 038516          464 YAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE-ITFLSLLSACS--HSGLVERGK  540 (708)
Q Consensus       464 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~--~~~~~~~a~  540 (708)
                      |...|++..|...... ...+...+..++..|.+.|.+++|+.+++..+..  .|.. ..|.-+...++  +-++..++.
T Consensus      1260 cve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L--eraH~gmftELaiLyaKy~peklmEhl 1336 (1630)
T 1xi4_A         1260 CVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGL--ERAHMGMFTELAILYSKFKPQKMREHL 1336 (1630)
T ss_pred             HhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--ChhHhHHHHHHHHHHHhCCHHHHHHHH
Confidence            8888888888887765 3445566678888888888888888888877753  4432 33433444333  444555555


Q ss_pred             HHHHHhhHCCCCc------ChHHHHHHHHHHHhcCCHHHHHHHHHhC-------------CCCCCCHHHHHHHHHHHHhc
Q 038516          541 ILWNQMKEHSLIP------GHKHYSCMVSLLSRAGLLDEAENLIAES-------------PYSEIRIELWRTLLSTCVAK  601 (708)
Q Consensus       541 ~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~  601 (708)
                      ++|..-.  .++|      +...|.-++..|.+.|+++.|...+-+-             -.+..+++++...+..|...
T Consensus      1337 k~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai~Fyl~~ 1414 (1630)
T 1xi4_A         1337 ELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF 1414 (1630)
T ss_pred             HHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHHHHHHhh
Confidence            5555332  2333      3566888888888888888888443222             11334666666666666554


Q ss_pred             C---------------CHHHHHHHHHHH------------HhcCCCCcchHHHHHHHHHhcCCch
Q 038516          602 R---------------NSRMVIQAAEQV------------LRLDPEDGTTHILLSNLYAATGRWD  639 (708)
Q Consensus       602 ~---------------~~~~a~~~~~~~------------~~~~p~~~~~~~~l~~~~~~~g~~~  639 (708)
                      .               |.+++++++.+.            ++ +-++...-..|.++|....+++
T Consensus      1415 ~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq-~~n~~~Vneal~el~ieeed~~ 1478 (1630)
T 1xi4_A         1415 KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQ-NHNNKSVNESLNNLFITEEDYQ 1478 (1630)
T ss_pred             ChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHH-HhcchhhhHHHHHHhcCccchH
Confidence            4               566665555521            11 2334444556666666655544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.79  E-value=8e-18  Score=168.35  Aligned_cols=285  Identities=10%  Similarity=-0.036  Sum_probs=188.6

Q ss_pred             CCchhHHhHHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHH
Q 038516          350 DSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGAL  426 (708)
Q Consensus       350 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll  426 (708)
                      +.+..++..+...+...|++++|..+|+.+.+.   +...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~   97 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG   97 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence            444555556666666667777776666665432   33344445566666777777777777766542 22344555555


Q ss_pred             HHHhCcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChH
Q 038516          427 SACADLA-ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAE  502 (708)
Q Consensus       427 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~  502 (708)
                      ..+...| ++++|...++.+.+.. +.+...+..+...+...|++++|...|+++.   +.+...+..+...|...|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHH
Confidence            6666666 6777777766665543 3345566677777777777777777777664   334566666777777788888


Q ss_pred             HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCC--------CCcChHHHHHHHHHHHhcCCHHHH
Q 038516          503 EAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHS--------LIPGHKHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       503 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A  574 (708)
                      +|...++++.+.. +.+...+..+...+...|++++|...++++.+..        .......+..++..|...|++++|
T Consensus       177 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            8888888877742 2245666777777777888888888777776531        122356777777888888888888


Q ss_pred             HHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH-hcCC
Q 038516          575 ENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA-ATGR  637 (708)
Q Consensus       575 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~  637 (708)
                      ...++++ ...+.+...|..++..+...|++++|...++++++++|+++..+..++.++. ..|+
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence            8877776 2222356677777777777888888888888888888888877778877773 4444

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.79  E-value=2.2e-17  Score=165.13  Aligned_cols=265  Identities=11%  Similarity=0.032  Sum_probs=225.5

Q ss_pred             CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038516          383 DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVD  462 (708)
Q Consensus       383 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  462 (708)
                      +...+..++..+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..+..
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   98 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC   98 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence            55566778888899999999999999998764 2233455566777889999999999999998865 456778889999


Q ss_pred             hhHhcC-CHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH
Q 038516          463 MYAKNG-DLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVER  538 (708)
Q Consensus       463 ~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  538 (708)
                      .+...| ++++|...|++..   +.+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKL  177 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHH
Confidence            999999 9999999999875   3467889999999999999999999999999863 2345667778889999999999


Q ss_pred             HHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC----------CCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516          539 GKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY----------SEIRIELWRTLLSTCVAKRNSRMVI  608 (708)
Q Consensus       539 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~a~  608 (708)
                      |.+.++++.+.. +.+...+..++..+...|++++|...++++..          .+.....+..++..+...|++++|.
T Consensus       178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            999999998732 23467888999999999999999999988711          0234678999999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ..+++++++.|+++.++..++.+|...|++++|.+.++++.+.
T Consensus       257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL  299 (330)
T ss_dssp             HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred             HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999977653

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.78  E-value=3.7e-16  Score=165.32  Aligned_cols=352  Identities=13%  Similarity=0.004  Sum_probs=232.4

Q ss_pred             CCChHHHHHHHhccCC-CChhHHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC----CCCc
Q 038516          264 CSDTQTAFSVFTRIEN-PDLVSWNSMIAGYME----NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA----LPAS  334 (708)
Q Consensus       264 ~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~  334 (708)
                      .++.++|...|++..+ .+...+..|...|..    .+++++|..+|++..+. +   +...+..+-..+..    .++.
T Consensus        56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G---LPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCH
Confidence            3444444444443322 233344444444444    44555555555554443 1   22333333333333    4455


Q ss_pred             cchHHHHHHHHHHCCCCchhHHhHHHHHHHh----cCCChhHHHHHhhcCCC-CEeeehhhHHHHhc----CCChHHHHH
Q 038516          335 AYGKPLHALVIKTGYDSSVFVGTTLLNMYFK----NGDAESPQKVFMLIAEK-DIVLWTEMIIGHSR----MGDGECAIK  405 (708)
Q Consensus       335 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~  405 (708)
                      +.|...++.....|   +...+..|...|..    .+++++|.+.|+...+. +...+..+...|..    .+++++|..
T Consensus       132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  208 (490)
T 2xm6_A          132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ  208 (490)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence            55555555544443   33444445555554    45556666655554332 34445555555555    677777888


Q ss_pred             HHHHHhHCCCccCHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHh----cCCHHHHHHHH
Q 038516          406 LFCKMCREGLKCDNFALSGALSACAD----LAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK----NGDLRAAESIF  477 (708)
Q Consensus       406 ~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~  477 (708)
                      .|++..+.|   +...+..+...+..    .++.++|..+++...+.+   +...+..+..+|..    .++.++|...|
T Consensus       209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~  282 (490)
T 2xm6_A          209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY  282 (490)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence            877777654   33444445555543    677888888888776654   34455566666766    88999999999


Q ss_pred             hhCCC-CChHHHHHHHHHHHhc-----CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHhhH
Q 038516          478 SQVLH-PDLKCWNALLGGYSHY-----GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSG---LVERGKILWNQMKE  548 (708)
Q Consensus       478 ~~~~~-~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~  548 (708)
                      +...+ .+...+..+...|...     +++++|+..|++..+.|   +...+..+...+...|   ++++|.++|++..+
T Consensus       283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~  359 (490)
T 2xm6_A          283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA  359 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence            88753 5677888888888887     89999999999999865   4556666666666656   88999999999988


Q ss_pred             CCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 038516          549 HSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       549 ~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~  620 (708)
                      .|   +...+..|...|..    .+++++|.+.++++... .++..+..+...|..    .+|.++|...++++++.+|+
T Consensus       360 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          360 KG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQ-GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            53   56778889999988    89999999999998544 468888889998888    89999999999999999954


Q ss_pred             ---CcchHHHHHHHHHhc
Q 038516          621 ---DGTTHILLSNLYAAT  635 (708)
Q Consensus       621 ---~~~~~~~l~~~~~~~  635 (708)
                         ++.+...|+.++...
T Consensus       436 ~~~~~~a~~~l~~~~~~~  453 (490)
T 2xm6_A          436 LFGTENRNITEKKLTAKQ  453 (490)
T ss_dssp             HHHHHHHHHHHTTSCHHH
T ss_pred             CcCCHHHHHHHHhcCHhH
Confidence               777777777766543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.78  E-value=1.3e-15  Score=162.81  Aligned_cols=412  Identities=8%  Similarity=0.002  Sum_probs=264.8

Q ss_pred             CcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHHHHHH-
Q 038516          215 TQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNSMIAG-  291 (708)
Q Consensus       215 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~-  291 (708)
                      +...|..++.. .+.|+++.|..+++.+++.. +.+...|..++..+.+.|+.++|..+|++...  |++..|...+.. 
T Consensus        12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~   89 (530)
T 2ooe_A           12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV   89 (530)
T ss_dssp             CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            44566666663 56777777777777777652 44566777777777777777777777777765  666666655542 


Q ss_pred             HHcCCCchHHHH----HHHHHHHcCCCCC-CHhHHHHHHHHHcC---------CCCccchHHHHHHHHHHCCCCchhHHh
Q 038516          292 YMENGNGEKAVD----MFVALRRMSLLKP-DEYTFAAIISATSA---------LPASAYGKPLHALVIKTGYDSSVFVGT  357 (708)
Q Consensus       292 ~~~~g~~~~A~~----~~~~m~~~~~~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~  357 (708)
                      ....|+.+.|.+    +|+.....-|..| +...|...+.....         .|+++.|..+|+..++........+|.
T Consensus        90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~  169 (530)
T 2ooe_A           90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR  169 (530)
T ss_dssp             HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred             HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence            234566666554    5555544323333 33444444443322         355556666666655511011112222


Q ss_pred             HHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHH------hHCC---CccCH--------H
Q 038516          358 TLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKM------CREG---LKCDN--------F  420 (708)
Q Consensus       358 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m------~~~g---~~p~~--------~  420 (708)
                      .........|. ..+..++.                 .+.+++..|..+++++      .+..   ++|+.        .
T Consensus       170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~  231 (530)
T 2ooe_A          170 DYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVD  231 (530)
T ss_dssp             HHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHH
T ss_pred             HHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHH
Confidence            22111100110 00111110                 1234566666666552      2221   23331        2


Q ss_pred             HHHHHHHHHhC----ccc----HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHh-------cCCHH-------HHHHHHh
Q 038516          421 ALSGALSACAD----LAI----LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK-------NGDLR-------AAESIFS  478 (708)
Q Consensus       421 t~~~ll~~~~~----~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~  478 (708)
                      .|...+.....    .++    .+.+..+++...... +.++..+..++..+.+       .|+++       +|..+|+
T Consensus       232 ~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~  310 (530)
T 2ooe_A          232 MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYE  310 (530)
T ss_dssp             HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHH
Confidence            33333322211    122    236667787777653 4567788888887775       68876       8999999


Q ss_pred             hCCC---C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516          479 QVLH---P-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE--ITFLSLLSACSHSGLVERGKILWNQMKEHSLI  552 (708)
Q Consensus       479 ~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  552 (708)
                      +...   | +...|..++..+.+.|++++|..+|+++++.  .|+.  ..|..++..+.+.|++++|.++|++..+.  .
T Consensus       311 ~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~  386 (530)
T 2ooe_A          311 RAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--A  386 (530)
T ss_dssp             HHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--T
T ss_pred             HHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--c
Confidence            8753   4 5788999999999999999999999999994  6653  46888888888899999999999999874  3


Q ss_pred             cC-hHHHHHHHHH-HHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hH
Q 038516          553 PG-HKHYSCMVSL-LSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT----TH  625 (708)
Q Consensus       553 p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~  625 (708)
                      |. ...|...+.. +...|+.++|..+|+++ ...|.++.+|..++..+...|+.++|..++++++...|.++.    .|
T Consensus       387 ~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw  466 (530)
T 2ooe_A          387 RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW  466 (530)
T ss_dssp             TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHH
T ss_pred             CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHH
Confidence            32 3333333322 34689999999999987 222246889999999999999999999999999999877665    78


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          626 ILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       626 ~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ...+......|+.+.+..+.+++.+.
T Consensus       467 ~~~~~~e~~~G~~~~~~~~~~r~~~~  492 (530)
T 2ooe_A          467 ARFLAFESNIGDLASILKVEKRRFTA  492 (530)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            78888888899999999999988764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.76  E-value=3.7e-17  Score=166.36  Aligned_cols=279  Identities=13%  Similarity=0.005  Sum_probs=221.9

Q ss_pred             HHhcCCChhHHH-HHhhcCCC-------CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc
Q 038516          363 YFKNGDAESPQK-VFMLIAEK-------DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI  434 (708)
Q Consensus       363 ~~~~g~~~~A~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  434 (708)
                      +.-.|++++|.. .++.....       +...+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            334577888887 77755431       34567788889999999999999999998764 3456678888888899999


Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CC-ChHHHHH---------------HHHHHH
Q 038516          435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HP-DLKCWNA---------------LLGGYS  496 (708)
Q Consensus       435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~---------------li~~~~  496 (708)
                      +++|...+..+.+.. +.+...+..+...|...|++++|...|+++.  .| +...+..               .+..+.
T Consensus       114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (368)
T 1fch_A          114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL  192 (368)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH
T ss_pred             HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh
Confidence            999999999988875 4577888899999999999999999998874  22 2222221               133344


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCC---hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHH
Q 038516          497 HYGMAEEAFMVFEVILEHGLRPD---EITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLD  572 (708)
Q Consensus       497 ~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~  572 (708)
                      ..|++++|...|+++.+.  .|+   ..++..+...+...|++++|...++++.+.  .| +...+..++..+...|+++
T Consensus       193 ~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~  268 (368)
T 1fch_A          193 SDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSE  268 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             hcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHH
Confidence            889999999999999985  454   677888899999999999999999999873  34 4678999999999999999


Q ss_pred             HHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHHhcCCchH
Q 038516          573 EAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED-----------GTTHILLSNLYAATGRWDC  640 (708)
Q Consensus       573 ~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~e  640 (708)
                      +|...++++ ...+.+...+..++..+...|++++|...+++++++.|++           ..+|..++.+|...|++++
T Consensus       269 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  348 (368)
T 1fch_A          269 EAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDA  348 (368)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGG
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHh
Confidence            999999997 3333568899999999999999999999999999999988           7889999999999999999


Q ss_pred             HHHHHHH
Q 038516          641 VAKMRRK  647 (708)
Q Consensus       641 A~~~~~~  647 (708)
                      |..++++
T Consensus       349 A~~~~~~  355 (368)
T 1fch_A          349 YGAADAR  355 (368)
T ss_dssp             HHHHHTT
T ss_pred             HHHhHHH
Confidence            9988763

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.76  E-value=9.6e-17  Score=156.14  Aligned_cols=251  Identities=12%  Similarity=-0.027  Sum_probs=135.1

Q ss_pred             HHHHhcCCChhHHHHHhhcCCCCE----eeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHH
Q 038516          361 NMYFKNGDAESPQKVFMLIAEKDI----VLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILK  436 (708)
Q Consensus       361 ~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  436 (708)
                      +-....|+++.|...++.....++    .....+..+|...|+++.|+..++.    .-+|+..++..+...+...++.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence            344556667777766665544322    2233455666666666666654433    12344445555555555555566


Q ss_pred             HHHHHHHHHHHhCC-CCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC
Q 038516          437 QGEMIHSQAEKTGH-GVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHG  515 (708)
Q Consensus       437 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  515 (708)
                      +|.+.++.+...+. +.+...+..+..++...|++++|++.+++  ..+...+..++..|.+.|++++|.+.|+++.+. 
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~-  159 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ-  159 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence            66665555555443 22344444445555555555555555555  344455555555555555555555555555553 


Q ss_pred             CCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHH
Q 038516          516 LRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTL  594 (708)
Q Consensus       516 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l  594 (708)
                       .|+.... .+.                               ..++..+...|++++|..+++++ ...|.++..|..+
T Consensus       160 -~p~~~~~-~l~-------------------------------~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~l  206 (291)
T 3mkr_A          160 -DEDATLT-QLA-------------------------------TAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQ  206 (291)
T ss_dssp             -CTTCHHH-HHH-------------------------------HHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             -CcCcHHH-HHH-------------------------------HHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHH
Confidence             3332111 110                               11222233345555555555555 1122455666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH-HHHHHHHHhcC
Q 038516          595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC-VAKMRRKMKGS  651 (708)
Q Consensus       595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e-A~~~~~~~~~~  651 (708)
                      +.++...|++++|+..++++++++|+++.++..++.++...|++++ +.++++++.+.
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            6666666666666666777777777777667777767777776655 34666666554

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.76  E-value=4.4e-15  Score=157.02  Aligned_cols=352  Identities=12%  Similarity=-0.010  Sum_probs=292.4

Q ss_pred             CChhHHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcC----CCCccchHHHHHHHHHHCCCC
Q 038516          280 PDLVSWNSMIAGYME----NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSA----LPASAYGKPLHALVIKTGYDS  351 (708)
Q Consensus       280 ~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~  351 (708)
                      .+...+..+...|..    .+++++|+..|++..+.    -+...+..+-..+..    .++.+.|...++...+.|   
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---  109 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---  109 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence            466777777788877    89999999999999876    345667777777777    899999999999998876   


Q ss_pred             chhHHhHHHHHHHh----cCCChhHHHHHhhcCCC-CEeeehhhHHHHhc----CCChHHHHHHHHHHhHCCCccCHHHH
Q 038516          352 SVFVGTTLLNMYFK----NGDAESPQKVFMLIAEK-DIVLWTEMIIGHSR----MGDGECAIKLFCKMCREGLKCDNFAL  422 (708)
Q Consensus       352 ~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~t~  422 (708)
                      +...+..|...|..    .+++++|...|+...+. +...+..+...|..    .+++++|++.|++..+.|   +...+
T Consensus       110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~  186 (490)
T 2xm6_A          110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSC  186 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence            56677788888888    78999999999987654 55677778888877    789999999999998875   45566


Q ss_pred             HHHHHHHhC----cccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHh----cCCHHHHHHHHhhCC-CCChHHHHHHHH
Q 038516          423 SGALSACAD----LAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK----NGDLRAAESIFSQVL-HPDLKCWNALLG  493 (708)
Q Consensus       423 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~  493 (708)
                      ..+-..+..    .++.++|..++....+.+   ++..+..+..+|..    .+++++|...|++.. ..+...+..+..
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  263 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY  263 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            666666665    799999999999988865   45667778888876    889999999999875 456778888888


Q ss_pred             HHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhcc-----CcHHHHHHHHHHhhHCCCCcChHHHHHHHHH
Q 038516          494 GYSH----YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHS-----GLVERGKILWNQMKEHSLIPGHKHYSCMVSL  564 (708)
Q Consensus       494 ~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  564 (708)
                      .|..    .+++++|+.+|++..+.|   +...+..+...+...     +++++|..+|++..+.|   +...+..|...
T Consensus       264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~  337 (490)
T 2xm6_A          264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAI  337 (490)
T ss_dssp             HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHH
Confidence            8888    899999999999998864   455666677777766     89999999999999864   34567778888


Q ss_pred             HHhcC---CHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh---
Q 038516          565 LSRAG---LLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA---  634 (708)
Q Consensus       565 ~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---  634 (708)
                      |...|   ++++|.+.++++... .++..+..+...|..    .+|.++|...++++.+..  ++.++..|+.+|..   
T Consensus       338 y~~~g~~~~~~~A~~~~~~a~~~-~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g  414 (490)
T 2xm6_A          338 YFRLGSEEEHKKAVEWFRKAAAK-GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG  414 (490)
T ss_dssp             HHHSCCHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred             HHhCCCcccHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence            88767   889999999998544 678899999999988    899999999999999864  57889999999999   


Q ss_pred             -cCCchHHHHHHHHHhcCCC
Q 038516          635 -TGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       635 -~g~~~eA~~~~~~~~~~~~  653 (708)
                       .+++++|...+++..+.+.
T Consensus       415 ~~~d~~~A~~~~~~A~~~~~  434 (490)
T 2xm6_A          415 VERDYVQAWAWFDTASTNDM  434 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHHHCCC
Confidence             8999999999999988663

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=1.3e-16  Score=157.85  Aligned_cols=236  Identities=13%  Similarity=0.124  Sum_probs=58.4

Q ss_pred             ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHH
Q 038516          228 RMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVA  307 (708)
Q Consensus       228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  307 (708)
                      +.|++++|.+.++++      +++.+|..|..++.+.|++++|++.|.+.  +|..+|..++.++...|++++|+..++.
T Consensus        15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            344455555555544      12235555555555555555555555432  3444555555555555555555554444


Q ss_pred             HHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeee
Q 038516          308 LRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLW  387 (708)
Q Consensus       308 m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~  387 (708)
                      .++.   .+++.+.+.++.++.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+     ..|
T Consensus        87 ark~---~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~  151 (449)
T 1b89_A           87 ARKK---ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF  151 (449)
T ss_dssp             -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred             HHHh---CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence            3332   2334445555555555555555544442       244445555555555555555555555544     245


Q ss_pred             hhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc
Q 038516          388 TEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKN  467 (708)
Q Consensus       388 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  467 (708)
                      ..++.++.+.|++++|.+.++++      .+..+|..++.+|...|+++.|......     +...+.....++..|.+.
T Consensus       152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~  220 (449)
T 1b89_A          152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR  220 (449)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHC
Confidence            55555555555555555555544      1344555555555555555555222211     112222233444455555


Q ss_pred             CCHHHHHHHHhhCC---CCChHHHHHHHHHHHh
Q 038516          468 GDLRAAESIFSQVL---HPDLKCWNALLGGYSH  497 (708)
Q Consensus       468 g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~  497 (708)
                      |++++|..+++..+   +.....|+.|.-+|++
T Consensus       221 G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          221 GYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             TCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence            55555555554443   1233444444444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=5.3e-16  Score=150.87  Aligned_cols=269  Identities=10%  Similarity=-0.021  Sum_probs=186.3

Q ss_pred             HHHcCCCCccchHHHHHHHHHHCCCCch--hHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHH
Q 038516          326 SATSALPASAYGKPLHALVIKTGYDSSV--FVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECA  403 (708)
Q Consensus       326 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A  403 (708)
                      +-....|++..|....+....  ..|+.  .....+.++|...|+++.|...++....++..++..+...+...++.++|
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A   84 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAI   84 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHH
Confidence            334557888888877765432  23332  35566789999999999999988775444566778888999999999999


Q ss_pred             HHHHHHHhHCCCccCHHH-HHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-
Q 038516          404 IKLFCKMCREGLKCDNFA-LSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-  481 (708)
Q Consensus       404 ~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-  481 (708)
                      ++.++++...+..|+... +..+...+...|++++|...++.      +.+...+..++.+|.+.|++++|.+.|+++. 
T Consensus        85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~  158 (291)
T 3mkr_A           85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQD  158 (291)
T ss_dssp             HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            999999998876676554 44555778899999999999987      5678889999999999999999999999985 


Q ss_pred             -CCChHHHHHHH----HHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChH
Q 038516          482 -HPDLKCWNALL----GGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHK  556 (708)
Q Consensus       482 -~~~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~  556 (708)
                       .|+.. ...+.    ..+...|++++|..+|+++.+.                                    .+.+..
T Consensus       159 ~~p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~------------------------------------~p~~~~  201 (291)
T 3mkr_A          159 QDEDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADK------------------------------------CSPTLL  201 (291)
T ss_dssp             HCTTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH------------------------------------SCCCHH
T ss_pred             hCcCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHh------------------------------------CCCcHH
Confidence             35432 11222    2222234455555555555443                                    122344


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM-VIQAAEQVLRLDPEDGTTHILLSNLYAA  634 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~  634 (708)
                      .++.++.++.+.|++++|+..++++ ...|.++..|..++..+...|+.++ +.++++++++++|+++.+..    ...+
T Consensus       202 ~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~  277 (291)
T 3mkr_A          202 LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAK  277 (291)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHH
Confidence            5555566666666666666666654 2232467777777777777777754 56788888899998876443    4445


Q ss_pred             cCCchHHHH
Q 038516          635 TGRWDCVAK  643 (708)
Q Consensus       635 ~g~~~eA~~  643 (708)
                      .+.++++..
T Consensus       278 ~~~fd~~~~  286 (291)
T 3mkr_A          278 ENDFDRLVL  286 (291)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.74  E-value=2.5e-15  Score=148.77  Aligned_cols=353  Identities=10%  Similarity=0.062  Sum_probs=146.5

Q ss_pred             hccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhccccchHHHHHHH
Q 038516           59 GRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVSLLEDQLMGSLLH  138 (708)
Q Consensus        59 ~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  138 (708)
                      -+.|++++|.+.+++++.|+  +|..+..++.+.|+ +++|++.|.+      .+|..+|..++.++...|++++|..++
T Consensus        14 ~~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~-~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl   84 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGM-VKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYL   84 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCC-HHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            37788999999999997654  89999999999999 9999999965      367789999999999999999999988


Q ss_pred             HHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcch
Q 038516          139 AQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFS  218 (708)
Q Consensus       139 ~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  218 (708)
                      +..++.  .+++.+.+.|+.+|.+.|+++++.++++.   |+..+|+.+...|...|++++|...|..+         ..
T Consensus        85 ~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n  150 (449)
T 1b89_A           85 QMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SN  150 (449)
T ss_dssp             --------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TC
T ss_pred             HHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hh
Confidence            888774  45678889999999999999998888864   77779999999999999999999999977         46


Q ss_pred             HHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCc
Q 038516          219 YSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNG  298 (708)
Q Consensus       219 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~  298 (708)
                      |..+..++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|++
T Consensus       151 ~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~  223 (449)
T 1b89_A          151 FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYF  223 (449)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCH
Confidence            889999999999999999888877      377888999999999999999977777655 3444455688888899999


Q ss_pred             hHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCC--CccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHH
Q 038516          299 EKAVDMFVALRRMSLLKPDEYTFAAIISATSALP--ASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVF  376 (708)
Q Consensus       299 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~  376 (708)
                      ++|+.+++......  +--...|+.+..++++-+  ++.+..+.|.      -..+.   ..+++++.            
T Consensus       224 eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~------~~ini---~k~~~~~~------------  280 (449)
T 1b89_A          224 EELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFW------SRVNI---PKVLRAAE------------  280 (449)
T ss_dssp             HHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS------TTSCH---HHHHHHHH------------
T ss_pred             HHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------HHhcC---cHHHHHHH------------
Confidence            99998888877441  233334444433333321  1111111111      00000   01111111            


Q ss_pred             hhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHC-CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchh
Q 038516          377 MLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCRE-GLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMS  455 (708)
Q Consensus       377 ~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  455 (708)
                            +...|..++..|...++++.|....   .+. ...-+...|..++.--....-+-+|..++-   +.    .+.
T Consensus       281 ------~~~~w~e~~~ly~~~~e~d~A~~tm---~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl---~~----~p~  344 (449)
T 1b89_A          281 ------QAHLWAELVFLYDKYEEYDNAIITM---MNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL---EF----KPL  344 (449)
T ss_dssp             ------TTTCHHHHHHHHHHTTCHHHHHHHH---HHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH---HH----CGG
T ss_pred             ------HHHHHHHHHHHHHhhchHHHHHHHH---HhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH---hc----CHH
Confidence                  3456777888888888888887643   332 222334444444433222222223333222   11    223


Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhC
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQV  480 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~  480 (708)
                      ..+-|+.++...=+...+.++|+..
T Consensus       345 ~l~~ll~~l~~~ld~~r~v~~~~~~  369 (449)
T 1b89_A          345 LLNDLLMVLSPRLDHTRAVNYFSKV  369 (449)
T ss_dssp             GHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHc
Confidence            3555666665555566666666544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.74  E-value=8.6e-17  Score=163.63  Aligned_cols=290  Identities=13%  Similarity=0.023  Sum_probs=220.7

Q ss_pred             HhcCCChHHHHH-HHHHHhHCCC-cc--CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516          394 HSRMGDGECAIK-LFCKMCREGL-KC--DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD  469 (708)
Q Consensus       394 ~~~~~~~~~A~~-~~~~m~~~g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  469 (708)
                      +...|++++|+. .+++...... .|  +...+..+...+...|++++|...+..+.+.. +.+...+..+..++.+.|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            445688899998 8876654321 11  23456677888899999999999999998765 5577888999999999999


Q ss_pred             HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH-HHH---------------HHHHH
Q 038516          470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT-FLS---------------LLSAC  530 (708)
Q Consensus       470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~---------------ll~~~  530 (708)
                      +++|...|+++.   +.+..+|..+...|...|++++|...++++.+.  .|+... +..               .+..+
T Consensus       114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            999999999874   457889999999999999999999999999985  454322 221               24444


Q ss_pred             hccCcHHHHHHHHHHhhHCC-CCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516          531 SHSGLVERGKILWNQMKEHS-LIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI  608 (708)
Q Consensus       531 ~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~  608 (708)
                      ...|++++|...++++.+.. ..++..++..++..|.+.|++++|...++++ ...+.+...|..++..+...|++++|.
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~  271 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV  271 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHH
Confidence            48999999999999998842 1124788999999999999999999999987 233346889999999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHH
Q 038516          609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAEL  688 (708)
Q Consensus       609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  688 (708)
                      ..++++++++|+++.++..++.+|...|++++|...++++.+.....  ..+.             ...+|....++..+
T Consensus       272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~-------------~~~~~~~~~~~~~l  336 (368)
T 1fch_A          272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS--RGPR-------------GEGGAMSENIWSTL  336 (368)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC---------------------CCCCCHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--CCcc-------------ccccchhhHHHHHH
Confidence            99999999999999999999999999999999999999887643211  0000             01256667777777


Q ss_pred             HHHHHHHHhhhhh
Q 038516          689 HRLRGNMRKLVTD  701 (708)
Q Consensus       689 ~~l~~~~~~~~~~  701 (708)
                      ...-..+++...+
T Consensus       337 ~~~~~~~g~~~~A  349 (368)
T 1fch_A          337 RLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHTCGGGH
T ss_pred             HHHHHHhCChHhH
Confidence            7777777666443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.73  E-value=2.8e-15  Score=158.15  Aligned_cols=326  Identities=11%  Similarity=-0.065  Sum_probs=170.2

Q ss_pred             hHHHHHHHHHHc--CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHH---HcCCCCccchHHHHHHHHHHCCCCchhHHh
Q 038516          283 VSWNSMIAGYME--NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISA---TSALPASAYGKPLHALVIKTGYDSSVFVGT  357 (708)
Q Consensus       283 ~~~~~li~~~~~--~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  357 (708)
                      .++..+..++..  .+++++|+..|++..+.  -+-+...+..+..+   +...++.+.|...++..++.. +.+..++.
T Consensus       137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~  213 (472)
T 4g1t_A          137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKV  213 (472)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHH
T ss_pred             HHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHH
Confidence            344444444433  34677888888877764  12223333322222   334566666666666666554 33344444


Q ss_pred             HHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHH
Q 038516          358 TLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQ  437 (708)
Q Consensus       358 ~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~  437 (708)
                      .+...+...+                           ...+++++|.+.+++..... +.+...+..+...+...|++++
T Consensus       214 ~l~~~~~~~~---------------------------~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~  265 (472)
T 4g1t_A          214 LLALKLHKMR---------------------------EEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDK  265 (472)
T ss_dssp             HHHHHHHHCC---------------------------------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHH---------------------------hhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHH
Confidence            4433333221                           22344555666665554432 2233445555555566666666


Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC
Q 038516          438 GEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR  517 (708)
Q Consensus       438 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  517 (708)
                      |...+....+.. +.+..++..+..+|...+....+..      ..      .........+.++.|...+++..+.. +
T Consensus       266 A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~------~~------~~~~~~~~~~~~~~A~~~~~~a~~~~-~  331 (472)
T 4g1t_A          266 AIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLR------EN------GMYGKRKLLELIGHAVAHLKKADEAN-D  331 (472)
T ss_dssp             HHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-T
T ss_pred             HHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHH------HH------HHHHHHHHHhhHHHHHHHHHHHhhcC-C
Confidence            666666655543 3344555555555533221111100      00      00011112234678888888888752 2


Q ss_pred             CChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh--HHHHHHHH-HHHhcCCHHHHHHHHHhCCCCCCCHHHHHHH
Q 038516          518 PDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH--KHYSCMVS-LLSRAGLLDEAENLIAESPYSEIRIELWRTL  594 (708)
Q Consensus       518 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l  594 (708)
                      .+...+..+...+...|++++|.+.|++..+....|..  ..+..+.. .+...|++++|+..++++....|+...+.  
T Consensus       332 ~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~--  409 (472)
T 4g1t_A          332 NLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE--  409 (472)
T ss_dssp             TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH--
T ss_pred             chhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH--
Confidence            24566778888999999999999999999875433322  12333333 24578899999999988732224433222  


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEE
Q 038516          595 LSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWI  662 (708)
Q Consensus       595 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~  662 (708)
                             +....+..+++++++.+|+++.+|..||.+|...|++++|++.+++..+.+.......+|+
T Consensus       410 -------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          410 -------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             -------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             -------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence                   2234566778899999999999999999999999999999999999988765544444443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.73  E-value=6.3e-17  Score=164.44  Aligned_cols=259  Identities=12%  Similarity=-0.009  Sum_probs=208.2

Q ss_pred             CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038516          383 DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVD  462 (708)
Q Consensus       383 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  462 (708)
                      +...|..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...++.+.+.. +.+...+..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            34457778888888999999999999888753 3456778888888889999999999999888765 456778889999


Q ss_pred             hhHhcCCHHHHHHHHhhCCC--CC-----------hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC---ChHHHHHH
Q 038516          463 MYAKNGDLRAAESIFSQVLH--PD-----------LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP---DEITFLSL  526 (708)
Q Consensus       463 ~~~~~g~~~~A~~~~~~~~~--~~-----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~~~~~l  526 (708)
                      +|...|++++|...|+++..  |+           ...+..+...+...|++++|...++++.+.  .|   +...+..+
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l  219 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHH
Confidence            99999999999999988742  21           223345578899999999999999999986  44   46788888


Q ss_pred             HHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCH
Q 038516          527 LSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNS  604 (708)
Q Consensus       527 l~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~  604 (708)
                      ...+...|++++|.+.|+++.+.  .| +...+..++.+|...|++++|...++++ ...+.+...|..++..|...|++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            89999999999999999999873  34 4778999999999999999999999987 23334688899999999999999


Q ss_pred             HHHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516          605 RMVIQAAEQVLRLDPE------------DGTTHILLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       605 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~  647 (708)
                      ++|...+++++++.|+            +..+|..|+.++...|+.+.|..+.++
T Consensus       298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            9999999999999887            367799999999999999999887664

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.71  E-value=3.4e-16  Score=156.19  Aligned_cols=258  Identities=11%  Similarity=0.002  Sum_probs=197.5

Q ss_pred             eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhH
Q 038516          386 LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYA  465 (708)
Q Consensus       386 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  465 (708)
                      .+..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT  100 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence            34445566666777777777777766543 2244556666666777777777777777776653 345667777778888


Q ss_pred             hcCCHHHHHHHHhhCC--CC-ChHHHHHH--------------HH-HHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHH
Q 038516          466 KNGDLRAAESIFSQVL--HP-DLKCWNAL--------------LG-GYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLL  527 (708)
Q Consensus       466 ~~g~~~~A~~~~~~~~--~~-~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll  527 (708)
                      ..|++++|.+.|+++.  .| +...+..+              .. .+...|++++|...++++.+.. +.+...+..+.
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la  179 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLG  179 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHH
Confidence            8888888888887763  22 22223222              22 3677889999999999999863 33577788888


Q ss_pred             HHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHH
Q 038516          528 SACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSR  605 (708)
Q Consensus       528 ~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~  605 (708)
                      ..+...|++++|.+.++++.+.  .| +...+..++..+...|++++|...++++ ...+.+...|..++..+...|+++
T Consensus       180 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          180 VLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence            8999999999999999999873  34 4678889999999999999999999987 333346888999999999999999


Q ss_pred             HHHHHHHHHHhcCCC------------CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          606 MVIQAAEQVLRLDPE------------DGTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       606 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      +|...++++++..|+            ++..+..++.+|...|++++|..++++.
T Consensus       258 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          258 LAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999999999999            7888999999999999999999988744

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.71  E-value=6.3e-16  Score=157.01  Aligned_cols=230  Identities=14%  Similarity=0.044  Sum_probs=194.4

Q ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHH
Q 038516          419 NFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGY  495 (708)
Q Consensus       419 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~  495 (708)
                      ...+......+...|++++|..+++.+.+.. +.+...+..+..+|.+.|++++|+..|+++.   +.+..+|..+...|
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSY  143 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            3457777888899999999999999998875 5578889999999999999999999999885   45688999999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCChH-----------HHHHHHHHHhccCcHHHHHHHHHHhhHCC-CCcChHHHHHHHH
Q 038516          496 SHYGMAEEAFMVFEVILEHGLRPDEI-----------TFLSLLSACSHSGLVERGKILWNQMKEHS-LIPGHKHYSCMVS  563 (708)
Q Consensus       496 ~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~~~~~~~l~~  563 (708)
                      ...|++++|+..|+++.+.  .|+..           .+..+...+...|++++|.++++++.+.. ..++...+..++.
T Consensus       144 ~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            9999999999999999984  44422           22334678899999999999999999852 1125788999999


Q ss_pred             HHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038516          564 LLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVA  642 (708)
Q Consensus       564 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~  642 (708)
                      .|.+.|++++|.+.++++ ...+.+...|..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|.
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999997 3333568899999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcC
Q 038516          643 KMRRKMKGS  651 (708)
Q Consensus       643 ~~~~~~~~~  651 (708)
                      ..++++.+.
T Consensus       302 ~~~~~al~~  310 (365)
T 4eqf_A          302 SNFLTALSL  310 (365)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999998764

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.71  E-value=1.1e-14  Score=155.69  Aligned_cols=387  Identities=11%  Similarity=0.072  Sum_probs=264.9

Q ss_pred             HHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--C-ChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCC
Q 038516          240 ARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--P-DLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKP  316 (708)
Q Consensus       240 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p  316 (708)
                      +..++.. +-+...|..++.. .+.|++++|..+|+++.+  | +...|..++..+.+.|++++|..+|++....   .|
T Consensus         3 e~al~~~-P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~---~p   77 (530)
T 2ooe_A            3 EKKLEEN-PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK---VL   77 (530)
T ss_dssp             HHHHHHC-TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---CC
T ss_pred             hhHhhhC-CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CC
Confidence            3444443 4578889999984 778999999999999876  3 5567999999999999999999999999865   47


Q ss_pred             CHhHHHHHHHHH-cCCCCccchHH----HHHHHHHH-CCCC-chhHHhHHHHHHHh---------cCCChhHHHHHhhcC
Q 038516          317 DEYTFAAIISAT-SALPASAYGKP----LHALVIKT-GYDS-SVFVGTTLLNMYFK---------NGDAESPQKVFMLIA  380 (708)
Q Consensus       317 ~~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~~~~---------~g~~~~A~~~~~~~~  380 (708)
                      +...|...+... ...|+.+.|.+    +|+..+.. |..| +..+|...+....+         .|+++.|..+|++..
T Consensus        78 ~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al  157 (530)
T 2ooe_A           78 HIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGC  157 (530)
T ss_dssp             CHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHH
Confidence            777766666433 45677777765    66666543 5443 45677777766554         455566666665554


Q ss_pred             CCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHH------hC---CC
Q 038516          381 EKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEK------TG---HG  451 (708)
Q Consensus       381 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~------~~---~~  451 (708)
                      +........+...|..   ++...             +..+...++.  ...+.+..|..++.....      ..   ++
T Consensus       158 ~~P~~~~~~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~  219 (530)
T 2ooe_A          158 VNPMINIEQLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVP  219 (530)
T ss_dssp             TSCCTTHHHHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCC
T ss_pred             hchhhhHHHHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCC
Confidence            4100000000001100   00000             0011111111  234567777776665321      11   23


Q ss_pred             Cc--------hhHHHHHHHhhHhc----CCH----HHHHHHHhhCC---CCChHHHHHHHHHHHh-------cCChH---
Q 038516          452 VE--------MSVCGSLVDMYAKN----GDL----RAAESIFSQVL---HPDLKCWNALLGGYSH-------YGMAE---  502 (708)
Q Consensus       452 ~~--------~~~~~~l~~~~~~~----g~~----~~A~~~~~~~~---~~~~~~~~~li~~~~~-------~g~~~---  502 (708)
                      |+        ...+...+......    ++.    +.|..+|++.+   +.+...|..++..+.+       .|+++   
T Consensus       220 p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~  299 (530)
T 2ooe_A          220 PQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK  299 (530)
T ss_dssp             CC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred             CCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence            33        23444444332221    222    46777888775   4578889988888876       79987   


Q ss_pred             ----HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcCh--HHHHHHHHHHHhcCCHHHHH
Q 038516          503 ----EAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH--KHYSCMVSLLSRAGLLDEAE  575 (708)
Q Consensus       503 ----~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~  575 (708)
                          +|..+|++..+. +.|+ ...+..++..+.+.|++++|..+|+++.+  +.|+.  ..|..++..+.+.|++++|.
T Consensus       300 ~~~~~A~~~~~~Al~~-~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~  376 (530)
T 2ooe_A          300 LFSDEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGR  376 (530)
T ss_dssp             HHHHHHHHHHHHHTTT-TCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHH
Confidence                899999999863 3554 66788888899999999999999999998  45642  47888899999999999999


Q ss_pred             HHHHhCCCCCC-CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          576 NLIAESPYSEI-RIELWRTLLST-CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       576 ~~~~~~~~~~~-~~~~~~~l~~~-~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      ++|+++...+| +...+...+.. +...|+.++|..+++++++..|+++.+|..++.++.+.|+.++|+.+++++...+
T Consensus       377 ~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~  455 (530)
T 2ooe_A          377 MIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG  455 (530)
T ss_dssp             HHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhcc
Confidence            99999843323 33444433333 3468999999999999999999999999999999999999999999999998764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.67  E-value=1.8e-15  Score=140.53  Aligned_cols=193  Identities=14%  Similarity=0.083  Sum_probs=158.3

Q ss_pred             CCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHH
Q 038516          451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSL  526 (708)
Q Consensus       451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l  526 (708)
                      +++...+..+...+.+.|++++|...|++.+   +.+...|..+...+.+.|++++|+..+++..+.  .|+ ...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            4566777888889999999999999999874   346788999999999999999999999999995  564 5678888


Q ss_pred             HHHHhcc-----------CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHH
Q 038516          527 LSACSHS-----------GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRT  593 (708)
Q Consensus       527 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~  593 (708)
                      ...+...           |++++|+..+++..+  +.|+ ...+..++.+|...|++++|+..++++ ... .++..+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence            8889999           999999999999987  4564 678889999999999999999999997 223 67899999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      ++.++...|++++|+..++++++++|+++.++..++.++...|++++|...+++.
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~  211 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE  211 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999988755

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.67  E-value=4.9e-17  Score=173.54  Aligned_cols=147  Identities=10%  Similarity=0.002  Sum_probs=126.7

Q ss_pred             cchhhHHHHHHhccCChHHHHHHhhcCC-------CCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHH
Q 038516           48 PYMYNNVLSMYGRCGSIRDARQVFDEIP-------KRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTS  120 (708)
Q Consensus        48 ~~~~~~li~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  120 (708)
                      ..+||+||++|+++|++++|..+|++|.       .||+++||+||.+|++.|+ .++|.++|++|.+.|+.||..||++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~-~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA-FKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC-HHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            4589999999999999999999997753       6899999999999999999 9999999999999999999999999


Q ss_pred             HHHHhccccch-HHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCC-----CcccHHHHHHHHhcC
Q 038516          121 LAQAVSLLEDQ-LMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDK-----DAVAWNSIILGNFKN  194 (708)
Q Consensus       121 ll~~~~~~~~~-~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~  194 (708)
                      +|.++++.|+. +.|.+++++|.+.|+.||..+|+.++....+.+-++.+.++...+..+     .+.+...|.+.+.+.
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d  285 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD  285 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence            99999999985 789999999999999999999999998888776666666665554431     234555566677765


Q ss_pred             C
Q 038516          195 D  195 (708)
Q Consensus       195 g  195 (708)
                      +
T Consensus       286 ~  286 (1134)
T 3spa_A          286 G  286 (1134)
T ss_dssp             S
T ss_pred             C
Confidence            5

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=1.3e-14  Score=139.09  Aligned_cols=218  Identities=8%  Similarity=-0.009  Sum_probs=176.0

Q ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--C----C----hHHHHH
Q 038516          421 ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--P----D----LKCWNA  490 (708)
Q Consensus       421 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~  490 (708)
                      .+..+...+...|++++|..++..+.+..  .+...+..+..++...|++++|...|++...  |    +    ..+|..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34444555556666666666666666555  5566677777777888888888888777642  1    2    578888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcC
Q 038516          491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAG  569 (708)
Q Consensus       491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  569 (708)
                      +...|...|++++|...|+++.+.  .|+.       ..+...|++++|...++.+..  ..| +...+..++..+...|
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence            999999999999999999999984  5663       345667889999999999987  334 3667888999999999


Q ss_pred             CHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          570 LLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       570 ~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      ++++|...++++ ...+.+...|..++..+...|++++|...++++++.+|+++..+..++.+|...|++++|.+.++++
T Consensus       154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            999999999988 3333568889999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcC
Q 038516          649 KGS  651 (708)
Q Consensus       649 ~~~  651 (708)
                      .+.
T Consensus       234 ~~~  236 (258)
T 3uq3_A          234 RTK  236 (258)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.65  E-value=1.5e-14  Score=144.11  Aligned_cols=228  Identities=14%  Similarity=0.037  Sum_probs=192.5

Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHH
Q 038516          420 FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYS  496 (708)
Q Consensus       420 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~  496 (708)
                      ..+......+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+++.   +.+..++..+...|.
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT  100 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHH
Confidence            344556667788999999999999998875 4477788889999999999999999999874   457888999999999


Q ss_pred             hcCChHHHHHHHHHHHHCCCCCChHH-HHHH--------------HH-HHhccCcHHHHHHHHHHhhHCCCCcChHHHHH
Q 038516          497 HYGMAEEAFMVFEVILEHGLRPDEIT-FLSL--------------LS-ACSHSGLVERGKILWNQMKEHSLIPGHKHYSC  560 (708)
Q Consensus       497 ~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~  560 (708)
                      ..|++++|...++++.+.  .|+... +..+              .. .+...|++++|...++++.+.. +.+...+..
T Consensus       101 ~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  177 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLS--QPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHAS  177 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHT--STTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh--CCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence            999999999999999985  454333 3322              22 3788999999999999998742 225778899


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516          561 MVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD  639 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  639 (708)
                      ++..+...|++++|.+.++++ ...+.+...|..++..+...|++++|...++++++..|+++..+..++.+|...|+++
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~  257 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYD  257 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHH
Confidence            999999999999999999987 2233468889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 038516          640 CVAKMRRKMKGS  651 (708)
Q Consensus       640 eA~~~~~~~~~~  651 (708)
                      +|.+.++++.+.
T Consensus       258 ~A~~~~~~a~~~  269 (327)
T 3cv0_A          258 LAAKQLVRAIYM  269 (327)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.63  E-value=8.8e-15  Score=154.28  Aligned_cols=385  Identities=9%  Similarity=-0.021  Sum_probs=195.1

Q ss_pred             ccHHHHHHHHhcCCChhHHHHHHHHHHhC-------CCCC-CcchHHHHHHHHhccCChhHHHHHHHHHHHhC------C
Q 038516          182 VAWNSIILGNFKNDKMKEGLSLFGAMVGS-------GVNP-TQFSYSMLLNACSRMGNFVCGKVIHARVIISN------T  247 (708)
Q Consensus       182 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~  247 (708)
                      ..||.|...+...|++++|++.|++..+.       ...| ...+|..+..++...|++++|...++++.+..      .
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            34555555555566666666655554321       1122 23456667777777777777777776665431      0


Q ss_pred             CC-ChhhHHHHHHhcc--cCCChHHHHHHHhccCC--C-ChhHHHHHHHH---HHcCCCchHHHHHHHHHHHcCCCCCCH
Q 038516          248 QV-DLPLENALLDMYS--KCSDTQTAFSVFTRIEN--P-DLVSWNSMIAG---YMENGNGEKAVDMFVALRRMSLLKPDE  318 (708)
Q Consensus       248 ~~-~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~~p~~  318 (708)
                      .+ ...++..+..++.  ..+++++|...|++..+  | +...+..+..+   +...++.++|++.+++..+.  .+.+.
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l--~p~~~  209 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL--NPDNQ  209 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH--CSSCH
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc--CCcch
Confidence            11 2233443333333  34567788888877654  3 33444444433   34567888899999888765  33445


Q ss_pred             hHHHHHHHHHc----CCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHH
Q 038516          319 YTFAAIISATS----ALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGH  394 (708)
Q Consensus       319 ~t~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~  394 (708)
                      ..+..+...+.    ..++.+.|...++...... +.+..++..+...|.+.|++++|...++                 
T Consensus       210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~-----------------  271 (472)
T 4g1t_A          210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLK-----------------  271 (472)
T ss_dssp             HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHH-----------------
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHH-----------------
Confidence            55554443333    3456777777777776654 4455555556666655555555555544                 


Q ss_pred             hcCCChHHHHHHHHHHhHCCCccCH-HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHH
Q 038516          395 SRMGDGECAIKLFCKMCREGLKCDN-FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAA  473 (708)
Q Consensus       395 ~~~~~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  473 (708)
                                    +..+.  .|+. .++..+...+...+....         ..       ............+..+.|
T Consensus       272 --------------~al~~--~p~~~~~~~~lg~~y~~~~~~~~---------~~-------~~~~~~~~~~~~~~~~~A  319 (472)
T 4g1t_A          272 --------------KALEY--IPNNAYLHCQIGCCYRAKVFQVM---------NL-------RENGMYGKRKLLELIGHA  319 (472)
T ss_dssp             --------------HHHHH--STTCHHHHHHHHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHH
T ss_pred             --------------HHHHh--CCChHHHHHHHHHHHHHHHHHhh---------hH-------HHHHHHHHHHHHhhHHHH
Confidence                          43332  2222 222222211111000000         00       000000111112234566


Q ss_pred             HHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH--HHHHHHH-HHhccCcHHHHHHHHHHhh
Q 038516          474 ESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI--TFLSLLS-ACSHSGLVERGKILWNQMK  547 (708)
Q Consensus       474 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~  547 (708)
                      ...|+...   +.+..++..+...|...|++++|+..|++.++....|...  .+..+.. .....|++++|+..|++..
T Consensus       320 ~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal  399 (472)
T 4g1t_A          320 VAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGV  399 (472)
T ss_dssp             HHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            66666553   3456678888889999999999999999998853332221  1222222 3457789999999999988


Q ss_pred             HCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516          548 EHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       548 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  626 (708)
                      +  +.|+........         ..+.+++++. ...|.++..|..++..+...|++++|+..+++++++.|.+|.+..
T Consensus       400 ~--i~~~~~~~~~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~  468 (472)
T 4g1t_A          400 K--INQKSREKEKMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASS  468 (472)
T ss_dssp             H--SCCCCHHHHHHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred             h--cCcccHHHHHHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhh
Confidence            7  556543322222         2333444333 223356788999999999999999999999999999999988777


Q ss_pred             HHH
Q 038516          627 LLS  629 (708)
Q Consensus       627 ~l~  629 (708)
                      .+|
T Consensus       469 ~~G  471 (472)
T 4g1t_A          469 WNG  471 (472)
T ss_dssp             ---
T ss_pred             cCC
Confidence            665

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.62  E-value=6.7e-16  Score=164.91  Aligned_cols=127  Identities=17%  Similarity=0.191  Sum_probs=101.9

Q ss_pred             CCchhHHHHHHHhhHhcCCHHHHHHHHhhC-------CCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHH
Q 038516          451 GVEMSVCGSLVDMYAKNGDLRAAESIFSQV-------LHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITF  523 (708)
Q Consensus       451 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  523 (708)
                      .....+||+||++|++.|++++|.++|++|       ..||+.|||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            334567888888888888888888888654       3688888888888888888888888888888888888898889


Q ss_pred             HHHHHHHhccCc-HHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHH
Q 038516          524 LSLLSACSHSGL-VERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENL  577 (708)
Q Consensus       524 ~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  577 (708)
                      +++|.++++.|+ .++|.++|++|.+.|+.||..+|++++....+.+-++...++
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv  258 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence            988888888887 477888888888888888888888887766665444444444

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.60  E-value=3.1e-14  Score=137.98  Aligned_cols=245  Identities=10%  Similarity=-0.121  Sum_probs=197.5

Q ss_pred             HHhcCCChHHHHHHHHHHhHCCC--cc-CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516          393 GHSRMGDGECAIKLFCKMCREGL--KC-DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD  469 (708)
Q Consensus       393 ~~~~~~~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  469 (708)
                      .+...|++++|+..|+++.+...  .| +..++..+...+...|++++|...++.+.+.. +.+...+..+...|...|+
T Consensus        14 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~   92 (275)
T 1xnf_A           14 PLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN   92 (275)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred             ccCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence            34567889999999999988642  12 34577788888899999999999999998875 4567889999999999999


Q ss_pred             HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHh
Q 038516          470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQM  546 (708)
Q Consensus       470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  546 (708)
                      +++|...|++..   +.+...|..+...|...|++++|...|+++.+.  .|+.......+..+...|++++|...++..
T Consensus        93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            999999999885   346889999999999999999999999999984  676666555666667789999999999888


Q ss_pred             hHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516          547 KEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR-----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       547 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      ... .+++...+ .++..+...++.++|...++++....|.     ...|..++..+...|++++|...++++++++|++
T Consensus       171 ~~~-~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          171 FEK-SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  248 (275)
T ss_dssp             HHH-SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             Hhc-CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence            764 22333333 4777888889999999999887444232     5778889999999999999999999999999987


Q ss_pred             cchHHHHHHHHHhcCCchHHHHHH
Q 038516          622 GTTHILLSNLYAATGRWDCVAKMR  645 (708)
Q Consensus       622 ~~~~~~l~~~~~~~g~~~eA~~~~  645 (708)
                      ...   .+.++...|++++|.+.+
T Consensus       249 ~~~---~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          249 FVE---HRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             CHH---HHHHHHHHHHHHHC----
T ss_pred             HHH---HHHHHHHHHHHHhhHHHH
Confidence            553   467888899999998765

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.58  E-value=2e-13  Score=141.84  Aligned_cols=372  Identities=10%  Similarity=0.033  Sum_probs=207.9

Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCCh---HHHHHHHhccCCCChhHHHHHHHHHHcCC--
Q 038516          222 LLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDT---QTAFSVFTRIENPDLVSWNSMIAGYMENG--  296 (708)
Q Consensus       222 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~g--  296 (708)
                      +...+.+.|++++|..+|....+.|   +...+..|..+|...|+.   ++|...|++..+.+...+..+...+...+  
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~   85 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA   85 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence            3445556777788888887777665   334445555666667777   88888888877666666777777555555  


Q ss_pred             ---CchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCc---cchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCCh
Q 038516          297 ---NGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPAS---AYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAE  370 (708)
Q Consensus       297 ---~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~  370 (708)
                         ++++|+..|++..+. |...   .+..+...+...+..   ..+...+......|   +......|...|...+.++
T Consensus        86 ~~~~~~~A~~~~~~Aa~~-g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~  158 (452)
T 3e4b_A           86 TEAEHHEAESLLKKAFAN-GEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD  158 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHT-TCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred             CCcCHHHHHHHHHHHHHC-CCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence               678899999988876 4333   444444444444433   33444444444444   3445566777777766544


Q ss_pred             hH----HHHHhhcCCCCEeeehhhHHHHhcCC---ChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHH
Q 038516          371 SP----QKVFMLIAEKDIVLWTEMIIGHSRMG---DGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHS  443 (708)
Q Consensus       371 ~A----~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~  443 (708)
                      .+    ..+++.....++..+..|...|...|   +.++|+..|++..+.|                             
T Consensus       159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-----------------------------  209 (452)
T 3e4b_A          159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-----------------------------  209 (452)
T ss_dssp             GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-----------------------------
T ss_pred             cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-----------------------------
Confidence            43    33344444444445555555555555   5555555555555544                             


Q ss_pred             HHHHhCCCCchhHHHHHHHhhHhc----CCHHHHHHHHhhCCCCChHHHHHHHHH-H--HhcCChHHHHHHHHHHHHCCC
Q 038516          444 QAEKTGHGVEMSVCGSLVDMYAKN----GDLRAAESIFSQVLHPDLKCWNALLGG-Y--SHYGMAEEAFMVFEVILEHGL  516 (708)
Q Consensus       444 ~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~g~  516 (708)
                             .++...+..|..+|...    +++++|...|+...+.+...+..|... +  ...+++++|+.+|++..+.| 
T Consensus       210 -------~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-  281 (452)
T 3e4b_A          210 -------TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-  281 (452)
T ss_dssp             -------CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT-
T ss_pred             -------CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC-
Confidence                   22222223344444332    567777777766653355666666665 3  45678888888888888765 


Q ss_pred             CCChHHHHHHHHHHhccC-----cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCC
Q 038516          517 RPDEITFLSLLSACSHSG-----LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYSEIR  587 (708)
Q Consensus       517 ~p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~  587 (708)
                        +...+..|...|. .|     ++++|.++|++.. .|   +...+..|...|..    ..++++|..+++++... .+
T Consensus       282 --~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~  353 (452)
T 3e4b_A          282 --QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN-GQ  353 (452)
T ss_dssp             --CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT-TC
T ss_pred             --CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh-Ch
Confidence              5555555655555 44     8888888888776 22   45566667777765    34888888888887443 34


Q ss_pred             HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH--hcCCchHHHHHHHHHhc
Q 038516          588 IELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA--ATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       588 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~--~~g~~~eA~~~~~~~~~  650 (708)
                      +.....|...|..    ..|.++|...++++.+..+..  ....+..+..  ..++..+|..+.++.++
T Consensus       354 ~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~--a~~~l~~l~~~~~~~~~~~a~~~~~~~~~  420 (452)
T 3e4b_A          354 NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPE--ANDLATQLEAPLTPAQRAEGQRLVQQELA  420 (452)
T ss_dssp             TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHH--HHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHH--HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            5556666666654    458888888888888776543  3334443332  23456677776665544

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=6.7e-14  Score=134.08  Aligned_cols=233  Identities=12%  Similarity=0.023  Sum_probs=184.8

Q ss_pred             ehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC--CCc----hhHHHHH
Q 038516          387 WTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGH--GVE----MSVCGSL  460 (708)
Q Consensus       387 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~l  460 (708)
                      |..+...+...|++++|+..|++..+..  .+...+..+...+...|++++|...+....+...  .++    ...+..+
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l   85 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI   85 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence            4456667777788888888888777765  6667777777778888888888888877765321  111    5778888


Q ss_pred             HHhhHhcCCHHHHHHHHhhCC--CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHH
Q 038516          461 VDMYAKNGDLRAAESIFSQVL--HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVE  537 (708)
Q Consensus       461 ~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~  537 (708)
                      ...|...|++++|...|++..  .|+.       ..+...|++++|...++++...  .|+ ...+..+...+...|+++
T Consensus        86 ~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~  156 (258)
T 3uq3_A           86 GNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWP  156 (258)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHH
Confidence            899999999999999998875  3543       4566778899999999999984  554 456777888999999999


Q ss_pred             HHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516          538 RGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR  616 (708)
Q Consensus       538 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  616 (708)
                      +|...++++.+.. +.+...+..++..+...|++++|...++++ ...+.+...|..++..+...|+.++|...++++++
T Consensus       157 ~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~  235 (258)
T 3uq3_A          157 NAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART  235 (258)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            9999999998742 224778889999999999999999999987 33334688899999999999999999999999999


Q ss_pred             cC------CCCcchHHHHHHH
Q 038516          617 LD------PEDGTTHILLSNL  631 (708)
Q Consensus       617 ~~------p~~~~~~~~l~~~  631 (708)
                      +.      |++..++..+..+
T Consensus       236 ~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          236 KDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHTTTTHHHHHHHHHHT
T ss_pred             hChhhcCCCchHHHHHHHHHh
Confidence            99      8877776666543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.56  E-value=2.6e-13  Score=129.48  Aligned_cols=197  Identities=11%  Similarity=-0.006  Sum_probs=167.6

Q ss_pred             hhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 038516          454 MSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSAC  530 (708)
Q Consensus       454 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  530 (708)
                      ...+..+...+...|++++|...|+++.   +.+...|..+...|...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            4566777888888999999999998874   4567888899999999999999999999998863 23567788888899


Q ss_pred             hccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516          531 SHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI  608 (708)
Q Consensus       531 ~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~  608 (708)
                      ...|++++|.++++++.+.+..| +...+..++..+...|++++|.+.++++ ...+.+...+..++..+...|++++|.
T Consensus       116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999998743445 3667888899999999999999999887 223246888889999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ..++++++..|++...+..++.+|...|++++|.+.++++.+.
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999988765

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.55  E-value=1.3e-13  Score=133.45  Aligned_cols=240  Identities=13%  Similarity=0.009  Sum_probs=144.5

Q ss_pred             HHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCC--chhHHHHHHHhhHhcC
Q 038516          391 IIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGV--EMSVCGSLVDMYAKNG  468 (708)
Q Consensus       391 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g  468 (708)
                      ...+...|++++|+..|++..+... .+...+..+...+...|++++|...+..+.+.+..+  ....+..+...+...|
T Consensus        10 a~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~   88 (272)
T 3u4t_A           10 ADFLFKNNNYAEAIEVFNKLEAKKY-NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG   88 (272)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHTTC-CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence            3444455555555555555544321 112234444444555555555555555544422111  1223556666677777


Q ss_pred             CHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHH
Q 038516          469 DLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWN  544 (708)
Q Consensus       469 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~  544 (708)
                      ++++|...|++..   +.+...|..+...|...|++++|+..|++..+.  .|+ ...+..+...+...+++++|.+.|+
T Consensus        89 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  166 (272)
T 3u4t_A           89 QDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFV  166 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777776653   345567777777777777777777777777764  443 3444444424444457778887777


Q ss_pred             HhhHCCCCcC-hHHHHHHHHHHHhcCC---HHHHHHHHHhC----CCCCCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 038516          545 QMKEHSLIPG-HKHYSCMVSLLSRAGL---LDEAENLIAES----PYSEIR------IELWRTLLSTCVAKRNSRMVIQA  610 (708)
Q Consensus       545 ~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~----~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~  610 (708)
                      ++.+  ..|+ ...+..++..+...|+   +++|...++++    ... |+      ...+..++..+...|++++|...
T Consensus       167 ~a~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  243 (272)
T 3u4t_A          167 KVLE--LKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG-GAKYKDELIEANEYIAYYYTINRDKVKADAA  243 (272)
T ss_dssp             HHHH--HSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG-GGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHH--hCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7776  3343 5566667777777776   66677666665    111 22      25677788888899999999999


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHhcC
Q 038516          611 AEQVLRLDPEDGTTHILLSNLYAATG  636 (708)
Q Consensus       611 ~~~~~~~~p~~~~~~~~l~~~~~~~g  636 (708)
                      ++++++++|+++.++..++.+....+
T Consensus       244 ~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          244 WKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHHHhcCccHHHHHHHhhhhhcccc
Confidence            99999999999988888877665544

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.55  E-value=1.9e-12  Score=125.08  Aligned_cols=218  Identities=12%  Similarity=-0.017  Sum_probs=162.9

Q ss_pred             HHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHh----cCCHHHHHHHHhhCC-CCChHHHHHHHHHHHh-
Q 038516          424 GALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK----NGDLRAAESIFSQVL-HPDLKCWNALLGGYSH-  497 (708)
Q Consensus       424 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~-  497 (708)
                      .+-..+...|++++|...++...+.   .+...+..+...|..    .+++++|...|++.. ..+...+..+...|.. 
T Consensus        11 ~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g   87 (273)
T 1ouv_A           11 GLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSG   87 (273)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCC
Confidence            3333444445555555555554441   233445556666666    777888888777664 2366777788888888 


Q ss_pred             ---cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh---
Q 038516          498 ---YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH----SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR---  567 (708)
Q Consensus       498 ---~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~---  567 (708)
                         .+++++|+..|++..+.+   +...+..+...+..    .+++++|.++|++..+.+   +...+..+...|..   
T Consensus        88 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~  161 (273)
T 1ouv_A           88 QGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRG  161 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred             CCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCC
Confidence               888888888888888864   66677777777877    888999999998888755   45567778888887   


Q ss_pred             -cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCc
Q 038516          568 -AGLLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA----TGRW  638 (708)
Q Consensus       568 -~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~  638 (708)
                       .+++++|...++++... .++..+..+...+..    .+++++|...++++++.+|  +..+..|+.+|..    .|++
T Consensus       162 ~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~  238 (273)
T 1ouv_A          162 TPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNE  238 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCS
T ss_pred             CCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCH
Confidence             88999999998887443 457778888888888    8899999999999998866  6678889999998    8999


Q ss_pred             hHHHHHHHHHhcCCC
Q 038516          639 DCVAKMRRKMKGSML  653 (708)
Q Consensus       639 ~eA~~~~~~~~~~~~  653 (708)
                      ++|.+.+++..+.+.
T Consensus       239 ~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          239 KQAIENFKKGCKLGA  253 (273)
T ss_dssp             TTHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHcCC
Confidence            999999988876653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.55  E-value=5.8e-13  Score=124.50  Aligned_cols=198  Identities=11%  Similarity=-0.002  Sum_probs=164.7

Q ss_pred             chhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 038516          453 EMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSA  529 (708)
Q Consensus       453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  529 (708)
                      +...+..+...+...|++++|.+.|+.+.   +.+...|..+...|...|++++|...++++.+.. +.+...+..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            45566777888888899999998888764   3467788889999999999999999999998852 3356778888888


Q ss_pred             Hhcc-CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516          530 CSHS-GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM  606 (708)
Q Consensus       530 ~~~~-~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~  606 (708)
                      +... |++++|...++++.+.+..|+ ...+..++..+...|++++|...++++ ...+.+...+..++..+...|++++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence            9999 999999999999987433343 567888899999999999999999887 2232457888889999999999999


Q ss_pred             HHHHHHHHHhcCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          607 VIQAAEQVLRLDP-EDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       607 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      |...++++++..| +++..+..++.++...|+.++|..+++.+.+.
T Consensus       166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            9999999999999 88888989999999999999999999888654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.54  E-value=1.1e-13  Score=131.23  Aligned_cols=197  Identities=12%  Similarity=0.076  Sum_probs=149.1

Q ss_pred             chhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHH
Q 038516          453 EMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSA  529 (708)
Q Consensus       453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  529 (708)
                      ....+..+...+...|++++|...|+++.   +.+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  100 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV  100 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence            45556677778888899999988888774   3467788888899999999999999999998852 3356777888888


Q ss_pred             HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516          530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI  608 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~  608 (708)
                      +...|++++|.+.++++.+.. +.+...+..++..+.+.|++++|...++++ ...+.+...+..++..+...|++++|.
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999999988742 234667888899999999999999999887 223246788888889999999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ..++++++..|+++..+..++.+|...|++++|.+.++++.+.
T Consensus       180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            9999999999999999999999999999999999999988764

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.53  E-value=2.8e-13  Score=125.67  Aligned_cols=191  Identities=17%  Similarity=0.084  Sum_probs=156.1

Q ss_pred             CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHH
Q 038516          482 HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYS  559 (708)
Q Consensus       482 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~  559 (708)
                      +++...+..+...+.+.|++++|+..|++.++.  .| +...+..+..++...|++++|+..+++..+  +.|+ ...+.
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~   77 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYM   77 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHH
Confidence            356778889999999999999999999999985  56 466788888899999999999999999997  4464 67888


Q ss_pred             HHHHHHHhc-----------CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516          560 CMVSLLSRA-----------GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL  627 (708)
Q Consensus       560 ~l~~~~~~~-----------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  627 (708)
                      .++.++...           |++++|...++++ ...|.+...|..+...+...|++++|+..++++++++ +++..+..
T Consensus        78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~  156 (217)
T 2pl2_A           78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHH
T ss_pred             HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHH
Confidence            899999999           9999999999998 3333468889999999999999999999999999999 99999999


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhhhcc
Q 038516          628 LSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEF  703 (708)
Q Consensus       628 l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  703 (708)
                      ++.+|...|++++|...++++.+.                          +|....++..+..+..+.++..+++.
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~--------------------------~P~~~~~~~~la~~~~~~g~~~~A~~  206 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQ--------------------------APKDLDLRVRYASALLLKGKAEEAAR  206 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--------------------------STTCHHHHHHHHHHHTC---------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--------------------------CCCChHHHHHHHHHHHHccCHHHHHH
Confidence            999999999999999999998764                          45555566666665555555555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.52  E-value=5.9e-13  Score=133.74  Aligned_cols=244  Identities=11%  Similarity=0.045  Sum_probs=185.0

Q ss_pred             eehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc-HHHHHHHHHHHHHhCCCCchhHHHHHHHhh
Q 038516          386 LWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI-LKQGEMIHSQAEKTGHGVEMSVCGSLVDMY  464 (708)
Q Consensus       386 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  464 (708)
                      .|+.+...+...|++++|+..+++.++.. +-+...|..+..++...|+ +++|...++.+.+.. +.+...|..+..++
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            35555666667777777777777776642 2234455666666667775 777777777777665 44667788888888


Q ss_pred             HhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhc-cCcHHHH
Q 038516          465 AKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSH-SGLVERG  539 (708)
Q Consensus       465 ~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~~~~~~a  539 (708)
                      ...|++++|+..|++++   +.+...|..+..++...|++++|+..++++++.  .| +...|+.+..++.. .|..++|
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchHH
Confidence            88999999999998875   457788999999999999999999999999985  55 46678888888887 5665666


Q ss_pred             -----HHHHHHhhHCCCCcC-hHHHHHHHHHHHhcC--CHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcC--------C
Q 038516          540 -----KILWNQMKEHSLIPG-HKHYSCMVSLLSRAG--LLDEAENLIAESPYSEIRIELWRTLLSTCVAKR--------N  603 (708)
Q Consensus       540 -----~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------~  603 (708)
                           ++.+++.++  +.|+ ...|..+..+|...|  ++++|.+.+.++...+.+...+..++..+...|        +
T Consensus       255 ~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~  332 (382)
T 2h6f_A          255 VLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKED  332 (382)
T ss_dssp             HHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence                 577888876  5564 667888888888888  688999988888444456778888888887763        2


Q ss_pred             -HHHHHHHHHHH-HhcCCCCcchHHHHHHHHHhc
Q 038516          604 -SRMVIQAAEQV-LRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       604 -~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~  635 (708)
                       .++|+.+++++ .+++|.....|..++..+..+
T Consensus       333 ~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          333 ILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence             58899999999 899999999888888766553

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.52  E-value=9.3e-13  Score=118.75  Aligned_cols=166  Identities=13%  Similarity=0.068  Sum_probs=142.2

Q ss_pred             CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHH
Q 038516          483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSC  560 (708)
Q Consensus       483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~  560 (708)
                      .+...|..+...|...|++++|++.|++.++.  .| +...+..+..++.+.|++++|...++.....  .| +...+..
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~   78 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYI   78 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHH
Confidence            35678888999999999999999999999885  56 4566888888899999999999999988773  33 3566777


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516          561 MVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD  639 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  639 (708)
                      ++..+...+++++|...+.++ ...+.+...+..++..+...|++++|+..++++++++|+++.+|..+|.+|...|+++
T Consensus        79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~  158 (184)
T 3vtx_A           79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD  158 (184)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence            888899999999999999887 3333568889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCC
Q 038516          640 CVAKMRRKMKGSM  652 (708)
Q Consensus       640 eA~~~~~~~~~~~  652 (708)
                      +|++.++++.+..
T Consensus       159 ~A~~~~~~al~~~  171 (184)
T 3vtx_A          159 EAVKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCC
Confidence            9999999887653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.52  E-value=5e-13  Score=138.86  Aligned_cols=344  Identities=9%  Similarity=-0.016  Sum_probs=225.6

Q ss_pred             HHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCc---cchHHHHHHHHHHCCCCchhHHhHHHHHH
Q 038516          287 SMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPAS---AYGKPLHALVIKTGYDSSVFVGTTLLNMY  363 (708)
Q Consensus       287 ~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~  363 (708)
                      .+...+.+.|++++|+.+|++..+. |. ++  .+..+-..+...|+.   ++|...|+...+.    +...+..|...+
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~-g~-~~--A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~   79 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAEL-GY-SE--AQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL   79 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-TC-CT--GGGTCC--------------------------------CHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHC-CC-HH--HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence            3566778899999999999999877 43 22  333344445556766   8898888888754    455566666655


Q ss_pred             HhcC-----CChhHHHHHhhcCCC-CEeeehhhHHHHhcCCChH---HHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc
Q 038516          364 FKNG-----DAESPQKVFMLIAEK-DIVLWTEMIIGHSRMGDGE---CAIKLFCKMCREGLKCDNFALSGALSACADLAI  434 (708)
Q Consensus       364 ~~~g-----~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  434 (708)
                      ...+     ++++|...|+...++ +...+..|...|...+...   ++.+.+......|.   ......+...+...+.
T Consensus        80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~  156 (452)
T 3e4b_A           80 AAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGT  156 (452)
T ss_dssp             HTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTC
T ss_pred             HhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCC
Confidence            5554     677898888877654 5567777888887766543   34555555554443   2233344445555553


Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcC---CHHHHHHHHhhCC---CCChHHHHHHHHHHHhc----CChHHH
Q 038516          435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG---DLRAAESIFSQVL---HPDLKCWNALLGGYSHY----GMAEEA  504 (708)
Q Consensus       435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~----g~~~~A  504 (708)
                      ++.+......+.+.-...++..+..|..+|...|   +.++|.+.|+...   .++...+..+...|...    +++++|
T Consensus       157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A  236 (452)
T 3e4b_A          157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTA  236 (452)
T ss_dssp             GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred             cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence            3333333222222222334447788888898999   8999999998774   34555557777777655    699999


Q ss_pred             HHHHHHHHHCCCCCChHHHHHHHHH-H--hccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcC-----CHHHHHH
Q 038516          505 FMVFEVILEHGLRPDEITFLSLLSA-C--SHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAG-----LLDEAEN  576 (708)
Q Consensus       505 ~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A~~  576 (708)
                      +.+|++.. .|   +...+..|... +  ...+++++|.++|++..+.|   +...+..|...|. .|     ++++|.+
T Consensus       237 ~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~  308 (452)
T 3e4b_A          237 QALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEA  308 (452)
T ss_dssp             HHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHH
T ss_pred             HHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHH
Confidence            99999987 43   44455555554 3  56899999999999998866   5666777888887 55     9999999


Q ss_pred             HHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHH
Q 038516          577 LIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA----TGRWDCVAKMRRKM  648 (708)
Q Consensus       577 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~  648 (708)
                      .++++.  +.++..+..+...|..    ..|.++|...++++.+  ++++.....|+.+|..    ..+.++|..++++.
T Consensus       309 ~~~~Aa--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A  384 (452)
T 3e4b_A          309 HFEKAV--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR--NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLA  384 (452)
T ss_dssp             HHHTTT--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT--TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHh--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh--hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence            999998  4788888888877776    3499999999999876  4667789999999986    46899999999999


Q ss_pred             hcCCC
Q 038516          649 KGSML  653 (708)
Q Consensus       649 ~~~~~  653 (708)
                      .+.|.
T Consensus       385 ~~~g~  389 (452)
T 3e4b_A          385 KAQDT  389 (452)
T ss_dssp             HTTCC
T ss_pred             HHCCC
Confidence            88764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.50  E-value=8.6e-13  Score=127.53  Aligned_cols=225  Identities=5%  Similarity=-0.100  Sum_probs=183.1

Q ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--CC----hHHHHHHHHHH
Q 038516          422 LSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--PD----LKCWNALLGGY  495 (708)
Q Consensus       422 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~  495 (708)
                      +......+...|++++|..+++.+.+.. +.+...+..+..+|...|++++|...|++...  ++    ...|..+...+
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            3345566788999999999999998764 34556788888999999999999999998753  22    33488999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHH
Q 038516          496 SHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDE  573 (708)
Q Consensus       496 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~  573 (708)
                      ...|++++|+..|+++.+.  .| +...+..+...+...|++++|.+.+++..+.  .| +...+..++..+...+++++
T Consensus        85 ~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~  160 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQAYYYNKEYVK  160 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999995  44 5577888888999999999999999999874  45 36677777734555669999


Q ss_pred             HHHHHHhC-CCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcC---CCC-----cchHHHHHHHHHhcCCchHH
Q 038516          574 AENLIAES-PYSEIRIELWRTLLSTCVAKRN---SRMVIQAAEQVLRLD---PED-----GTTHILLSNLYAATGRWDCV  641 (708)
Q Consensus       574 A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~eA  641 (708)
                      |.+.++++ ...+.+...+..+...+...|+   .++|...+++++++.   |+.     ..+|..++.+|...|++++|
T Consensus       161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            99999988 2332457788888888888888   888999999999876   442     25788999999999999999


Q ss_pred             HHHHHHHhcC
Q 038516          642 AKMRRKMKGS  651 (708)
Q Consensus       642 ~~~~~~~~~~  651 (708)
                      .+.++++.+.
T Consensus       241 ~~~~~~al~~  250 (272)
T 3u4t_A          241 DAAWKNILAL  250 (272)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.50  E-value=1.4e-12  Score=131.01  Aligned_cols=226  Identities=8%  Similarity=0.001  Sum_probs=192.4

Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC-HHHHHHHHhhCC---CCChHHHHHHHHHH
Q 038516          420 FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD-LRAAESIFSQVL---HPDLKCWNALLGGY  495 (708)
Q Consensus       420 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~~  495 (708)
                      ..+..+...+...|++++|...++.+.+.. +.+...++.+..++...|+ +++|+..|++++   +.+...|+.+..++
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            345566666788899999999999998876 4567888999999999997 999999999885   45788999999999


Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHh-cCCHH
Q 038516          496 SHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSR-AGLLD  572 (708)
Q Consensus       496 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~  572 (708)
                      ...|++++|+..|+++++.  .| +...|..+..++...|++++|+..++++++  +.|+ ...|+.++.+|.+ .|..+
T Consensus       177 ~~~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             HHccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence            9999999999999999995  56 567788888999999999999999999998  4554 7789999999999 66658


Q ss_pred             HH-----HHHHHhC-CCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC--------
Q 038516          573 EA-----ENLIAES-PYSEIRIELWRTLLSTCVAKR--NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG--------  636 (708)
Q Consensus       573 ~A-----~~~~~~~-~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------  636 (708)
                      +|     ++.++++ ...+.+...|..+...+...|  ++++|...++++ +.+|+++.++..|+++|.+.|        
T Consensus       253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence            88     4777776 334356889999999998888  689999999998 999999999999999999985        


Q ss_pred             -CchHHHHHHHHH-hcC
Q 038516          637 -RWDCVAKMRRKM-KGS  651 (708)
Q Consensus       637 -~~~eA~~~~~~~-~~~  651 (708)
                       .+++|+++++++ .+.
T Consensus       332 ~~~~~A~~~~~~l~~~~  348 (382)
T 2h6f_A          332 DILNKALELCEILAKEK  348 (382)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHh
Confidence             258999999988 553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.49  E-value=4.2e-13  Score=127.24  Aligned_cols=215  Identities=16%  Similarity=0.091  Sum_probs=149.3

Q ss_pred             EeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHh
Q 038516          384 IVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDM  463 (708)
Q Consensus       384 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  463 (708)
                      ...|..+...+...|++++|...|+++.+..                                    +.+...+..+...
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~------------------------------------~~~~~~~~~la~~   66 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN------------------------------------KEDAIPYINFANL   66 (243)
T ss_dssp             -------------------CCTTHHHHHTTC------------------------------------TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC------------------------------------cccHHHHHHHHHH
Confidence            3445555666666666666666666665431                                    2234455566667


Q ss_pred             hHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHH
Q 038516          464 YAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGK  540 (708)
Q Consensus       464 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  540 (708)
                      +...|++++|...|+++.   +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus        67 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~  145 (243)
T 2q7f_A           67 LSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLAL  145 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence            777777777777777663   3467788888888999999999999999988853 335667778888899999999999


Q ss_pred             HHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516          541 ILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       541 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  619 (708)
                      ..++++.+.. +.+...+..++..+.+.|++++|...++++ ...+.+...|..+...+...|+.++|...++++++++|
T Consensus       146 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          146 PYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            9999988732 234677888999999999999999999887 22324688899999999999999999999999999999


Q ss_pred             CCcchHHHHHHHHHhcC
Q 038516          620 EDGTTHILLSNLYAATG  636 (708)
Q Consensus       620 ~~~~~~~~l~~~~~~~g  636 (708)
                      +++.++..++.+....|
T Consensus       225 ~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          225 DHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             TCHHHHHHHTC------
T ss_pred             chHHHHHHHHHHHhhcc
Confidence            99988887776554433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.49  E-value=9.6e-13  Score=127.39  Aligned_cols=218  Identities=14%  Similarity=0.048  Sum_probs=179.5

Q ss_pred             hCcccHHHHHHHHHHHHHhCC---CCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHH
Q 038516          430 ADLAILKQGEMIHSQAEKTGH---GVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEE  503 (708)
Q Consensus       430 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~  503 (708)
                      ...|++++|...++.+.+...   +.+...+..+...+...|++++|...|+++.   +.+..+|..+...|...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            456889999999999887632   1246788889999999999999999999885   4568899999999999999999


Q ss_pred             HHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 038516          504 AFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-  581 (708)
Q Consensus       504 A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  581 (708)
                      |...|+++.+.  .| +...+..+...+...|++++|...++++.+  ..|+..........+...|++++|...+++. 
T Consensus        96 A~~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           96 AYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99999999995  44 567788888999999999999999999987  4565555555556667889999999999776 


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC----cchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          582 PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED----GTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       582 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      ...+++...+ .++..+...++.++|...++++++..|+.    +..+..++.+|...|++++|...++++.+..
T Consensus       172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  245 (275)
T 1xnf_A          172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  245 (275)
T ss_dssp             HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            2222333334 36677778889999999999999887743    6789999999999999999999999998753

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.49  E-value=4.3e-12  Score=120.96  Aligned_cols=200  Identities=12%  Similarity=-0.004  Sum_probs=151.2

Q ss_pred             HHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChH
Q 038516          426 LSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAE  502 (708)
Q Consensus       426 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~  502 (708)
                      ...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.   +.+...|..+...|...|+++
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  122 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYE  122 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHH
Confidence            333344444444444444444332 3345566677777778888888888887764   346778888888999999999


Q ss_pred             HHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          503 EAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       503 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      +|.++++++.+.+..|+ ...+..+...+...|++++|.+.++++.+.. +.+...+..++..+...|++++|...++++
T Consensus       123 ~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  201 (252)
T 2ho1_A          123 EAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYYDLF  201 (252)
T ss_dssp             HHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99999999887434554 4567777788899999999999999988742 224677888999999999999999999987


Q ss_pred             -CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516          582 -PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL  627 (708)
Q Consensus       582 -~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  627 (708)
                       ...+.+...+..+...+...|+.++|...++++++..|+++.....
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          202 AQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             HTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence             3343567788888889999999999999999999999998875543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.49  E-value=3.4e-13  Score=141.09  Aligned_cols=206  Identities=13%  Similarity=0.047  Sum_probs=174.1

Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCH-HHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHH
Q 038516          436 KQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDL-RAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVI  511 (708)
Q Consensus       436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m  511 (708)
                      +.+...+...... .+.+...+..+...|...|++ ++|++.|++..   +.+...|..+...|...|++++|...|+++
T Consensus        85 ~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  163 (474)
T 4abn_A           85 EKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGA  163 (474)
T ss_dssp             HHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444433322 234677778888888899999 99999998874   345789999999999999999999999999


Q ss_pred             HHCCCCCChHHHHHHHHHHhcc---------CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhc--------CCHHH
Q 038516          512 LEHGLRPDEITFLSLLSACSHS---------GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRA--------GLLDE  573 (708)
Q Consensus       512 ~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~  573 (708)
                      .+.  .|+...+..+...+...         |++++|.+.|+++.+  +.|+ ...|..++.+|...        |++++
T Consensus       164 l~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          164 LTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQ--MDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             Hhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            984  68877888888899999         999999999999988  4454 77888999999998        99999


Q ss_pred             HHHHHHhCCC-CC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516          574 AENLIAESPY-SE---IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       574 A~~~~~~~~~-~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~  646 (708)
                      |.+.++++.. .+   .+...|..++.++...|++++|...++++++++|+++.++..++.++...|++++|.+.+.
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999833 32   3788999999999999999999999999999999999999999999999999999987543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.48  E-value=5.3e-12  Score=121.99  Aligned_cols=224  Identities=13%  Similarity=0.009  Sum_probs=174.7

Q ss_pred             ehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhC----cccHHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 038516          387 WTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACAD----LAILKQGEMIHSQAEKTGHGVEMSVCGSLVD  462 (708)
Q Consensus       387 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  462 (708)
                      +..+...|...|++++|+..|++..+.+   +...+..+...+..    .+++++|...++...+.+   ++..+..+..
T Consensus         9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~   82 (273)
T 1ouv_A            9 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN   82 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence            3445555666667777777777666622   23445555555666    777777777777777665   5666777788


Q ss_pred             hhHh----cCCHHHHHHHHhhCC-CCChHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhc-
Q 038516          463 MYAK----NGDLRAAESIFSQVL-HPDLKCWNALLGGYSH----YGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSH-  532 (708)
Q Consensus       463 ~~~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~-  532 (708)
                      +|..    .+++++|...|++.. ..+...+..+...|..    .+++++|+..|++..+.+   +...+..+...+.. 
T Consensus        83 ~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~  159 (273)
T 1ouv_A           83 LYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAG  159 (273)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT
T ss_pred             HHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcC
Confidence            8888    899999999988775 3467788889999998    999999999999999965   55667777777777 


Q ss_pred             ---cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----c
Q 038516          533 ---SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYSEIRIELWRTLLSTCVA----K  601 (708)
Q Consensus       533 ---~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~  601 (708)
                         .+++++|..+|++..+.+   +...+..+...|..    .+++++|...++++... .+...+..+...+..    .
T Consensus       160 ~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~l~~~~~~g~~~~  235 (273)
T 1ouv_A          160 RGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-ENGGGCFNLGAMQYNGEGVT  235 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSS
T ss_pred             CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC-CCHHHHHHHHHHHHcCCCcc
Confidence               899999999999998854   45677888999999    99999999999988444 347788888888988    8


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcc
Q 038516          602 RNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       602 ~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      ++.++|...+++++++.|+++.
T Consensus       236 ~~~~~A~~~~~~a~~~~~~~a~  257 (273)
T 1ouv_A          236 RNEKQAIENFKKGCKLGAKGAC  257 (273)
T ss_dssp             CCSTTHHHHHHHHHHHTCHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999999887543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.46  E-value=1e-11  Score=115.93  Aligned_cols=205  Identities=13%  Similarity=0.008  Sum_probs=159.7

Q ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHh
Q 038516          421 ALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSH  497 (708)
Q Consensus       421 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~  497 (708)
                      .+..+...+...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.|+++.   +.+..++..+...+..
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A           10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            44445555556666666666666655543 3345667778888888888888888888774   3467788889999999


Q ss_pred             c-CChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHH
Q 038516          498 Y-GMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       498 ~-g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A  574 (708)
                      . |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.  .| +...+..++..+...|++++|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A  166 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDA  166 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHH
Confidence            9 999999999999998433454 456777888999999999999999999873  34 367788899999999999999


Q ss_pred             HHHHHhC-CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516          575 ENLIAES-PYSE-IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL  628 (708)
Q Consensus       575 ~~~~~~~-~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  628 (708)
                      ...++++ ...+ .+...+..+...+...|+.+.|...++.+.+..|+++.....+
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          167 DYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            9999887 2232 4567777777778899999999999999999999998766554

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.46  E-value=5.6e-13  Score=137.60  Aligned_cols=260  Identities=14%  Similarity=0.039  Sum_probs=180.8

Q ss_pred             hHHHHhcCCChHHHHHHHHHHhHCCCccCH----HHHHHHHHHHhCcccHHHHHHHHHHHHHh----CC-CCchhHHHHH
Q 038516          390 MIIGHSRMGDGECAIKLFCKMCREGLKCDN----FALSGALSACADLAILKQGEMIHSQAEKT----GH-GVEMSVCGSL  460 (708)
Q Consensus       390 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l  460 (708)
                      +...+...|++++|...|++..+.+.. +.    ..+..+...+...|++++|...++...+.    +. +.....+..+
T Consensus        54 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  132 (411)
T 4a1s_A           54 EGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNL  132 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHH
Confidence            344555666666666666666554211 11    24555555666667777777666655432    11 2234566677


Q ss_pred             HHhhHhcCCHHHHHHHHhhCCC---------CChHHHHHHHHHHHhcCC-----------------hHHHHHHHHHHHHC
Q 038516          461 VDMYAKNGDLRAAESIFSQVLH---------PDLKCWNALLGGYSHYGM-----------------AEEAFMVFEVILEH  514 (708)
Q Consensus       461 ~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~m~~~  514 (708)
                      ...|...|++++|...|++...         ....++..+...|...|+                 +++|+..+++..+.
T Consensus       133 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~  212 (411)
T 4a1s_A          133 GNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKL  212 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            7788888888888888876631         124467778888888888                 88888888887652


Q ss_pred             ----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCC-CCcC----hHHHHHHHHHHHhcCCHHHHHHHHHhC---
Q 038516          515 ----GLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHS-LIPG----HKHYSCMVSLLSRAGLLDEAENLIAES---  581 (708)
Q Consensus       515 ----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---  581 (708)
                          +-.|. ...+..+...+...|++++|...+++..+.. -.++    ...+..++..|...|++++|...++++   
T Consensus       213 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  292 (411)
T 4a1s_A          213 MRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLAL  292 (411)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence                11121 2356677778889999999999999887631 0111    236788889999999999999998876   


Q ss_pred             -CCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          582 -PYSE---IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------GTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       582 -~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                       +...   .....+..+...+...|++++|...+++++++.++.      ..++..++.+|...|++++|...+++..+
T Consensus       293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          293 AVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence             1110   114567788888999999999999999999875543      33788999999999999999999998755

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.42  E-value=2.2e-12  Score=128.83  Aligned_cols=259  Identities=18%  Similarity=0.108  Sum_probs=186.1

Q ss_pred             HHHHhcCCChHHHHHHHHHHhHCCCccC----HHHHHHHHHHHhCcccHHHHHHHHHHHHHh----CCC-CchhHHHHHH
Q 038516          391 IIGHSRMGDGECAIKLFCKMCREGLKCD----NFALSGALSACADLAILKQGEMIHSQAEKT----GHG-VEMSVCGSLV  461 (708)
Q Consensus       391 i~~~~~~~~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~  461 (708)
                      ...+...|++++|...|+++.+.... +    ...+..+...+...|++++|...+......    +.. ....++..+.
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~   90 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   90 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            44555667777777777766654211 1    234555666666777777777776654432    211 1245667778


Q ss_pred             HhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHH
Q 038516          462 DMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGM--------------------AEEAFMVFEVIL  512 (708)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~  512 (708)
                      ..|...|++++|...+++...     ++    ..++..+...|...|+                    +++|...+++..
T Consensus        91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~  170 (338)
T 3ro2_A           91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL  170 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            888888999999888877631     22    3477788888888899                    899999888876


Q ss_pred             HC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-
Q 038516          513 EH----GLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-  581 (708)
Q Consensus       513 ~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  581 (708)
                      ..    +-.|. ...+..+...+...|++++|...+++..+.    +..+ ....+..++..+...|++++|...++++ 
T Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            42    11111 235677777889999999999999988754    1111 1347888899999999999999998876 


Q ss_pred             ---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          582 ---PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------GTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       582 ---~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                         +.. ++    ...+..+...+...|++++|...+++++++.|..      ..++..++.+|...|++++|...++++
T Consensus       251 ~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  329 (338)
T 3ro2_A          251 LLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  329 (338)
T ss_dssp             HHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhh-cchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence               111 12    4567788888999999999999999999876544      336889999999999999999999988


Q ss_pred             hcC
Q 038516          649 KGS  651 (708)
Q Consensus       649 ~~~  651 (708)
                      .+.
T Consensus       330 ~~~  332 (338)
T 3ro2_A          330 LEI  332 (338)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            764

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.42  E-value=2.7e-12  Score=139.50  Aligned_cols=163  Identities=17%  Similarity=0.171  Sum_probs=143.4

Q ss_pred             ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHH
Q 038516          484 DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCM  561 (708)
Q Consensus       484 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l  561 (708)
                      +..+|+.|...|.+.|++++|++.|++.++.  .|+ ...+..+..++.+.|++++|++.|++.++  +.|+ ...|..+
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL   83 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence            4567888899999999999999999999884  665 56788888899999999999999999887  5565 6788999


Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038516          562 VSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC  640 (708)
Q Consensus       562 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e  640 (708)
                      +.+|...|++++|++.++++ ...+.+...|..++..+...|++++|+..++++++++|+++.++..|+.+|...|+|++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            99999999999999999987 33434688999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc
Q 038516          641 VAKMRRKMKG  650 (708)
Q Consensus       641 A~~~~~~~~~  650 (708)
                      |.+.++++.+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9998887644

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.42  E-value=5e-12  Score=118.45  Aligned_cols=165  Identities=7%  Similarity=-0.101  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHH
Q 038516          485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVS  563 (708)
Q Consensus       485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~  563 (708)
                      +..|......+...|++++|+..|++.++....++...+..+..++...|++++|++.+++..+  ..|+ ...+..++.
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~   84 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA   84 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence            3444444445555555555555555555432113444444444455555555555555555544  2232 334444555


Q ss_pred             HHHhcCCHHHHHHHHHhCC-CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHHHH
Q 038516          564 LLSRAGLLDEAENLIAESP-YSEIRI-------ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE--DGTTHILLSNLYA  633 (708)
Q Consensus       564 ~~~~~g~~~~A~~~~~~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~  633 (708)
                      +|...|++++|...++++. ..|.+.       ..|..++..+...|++++|+..++++++++|+  ++.++..++.+|.
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~  164 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFY  164 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHH
Confidence            5555555555555554441 111122       23444444455555555555555555555555  5555555555555


Q ss_pred             hcCCc---------------------------hHHHHHHHHHhcC
Q 038516          634 ATGRW---------------------------DCVAKMRRKMKGS  651 (708)
Q Consensus       634 ~~g~~---------------------------~eA~~~~~~~~~~  651 (708)
                      ..|+.                           ++|...+++..+.
T Consensus       165 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          165 NNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            55554                           9999999988764

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.42  E-value=1.5e-12  Score=134.03  Aligned_cols=193  Identities=19%  Similarity=0.119  Sum_probs=98.8

Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCC--------------------hHHHHH
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGM--------------------AEEAFM  506 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~  506 (708)
                      ++..+...|...|++++|...+++...     ++    ..++..+...|...|+                    +++|..
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~  168 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVD  168 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHH
Confidence            344445555555555555555554421     11    2345555555555565                    566665


Q ss_pred             HHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCc-ChHHHHHHHHHHHhcCCHHHHHH
Q 038516          507 VFEVILEH----GLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIP-GHKHYSCMVSLLSRAGLLDEAEN  576 (708)
Q Consensus       507 ~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~  576 (708)
                      .+++..+.    +-.|. ..++..+...+...|++++|...+++..+.    +..+ ....+..++..|...|++++|..
T Consensus       169 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  248 (406)
T 3sf4_A          169 FYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  248 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            55554431    10111 123444555556666666666666655542    1001 12245555666666666666666


Q ss_pred             HHHhC----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHHHHHHHHHhcCCchHHH
Q 038516          577 LIAES----PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------GTTHILLSNLYAATGRWDCVA  642 (708)
Q Consensus       577 ~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~  642 (708)
                      .++++    +.. ++    ...+..++..+...|++++|...+++++++.+..      ..++..++.+|...|++++|.
T Consensus       249 ~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          249 YYKKTLLLARQL-KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHhC-cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            65554    111 11    3345555555666666666666666666554332      334556666666666666666


Q ss_pred             HHHHHHh
Q 038516          643 KMRRKMK  649 (708)
Q Consensus       643 ~~~~~~~  649 (708)
                      +.+++..
T Consensus       328 ~~~~~al  334 (406)
T 3sf4_A          328 HFAEKHL  334 (406)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            6665543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.42  E-value=3.4e-12  Score=133.44  Aligned_cols=178  Identities=10%  Similarity=0.038  Sum_probs=157.3

Q ss_pred             HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHH
Q 038516          470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMA-EEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWN  544 (708)
Q Consensus       470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~  544 (708)
                      ++++...++...   +.+...|..+...|...|++ ++|+..|+++.+.  .|+ ...+..+..+|...|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            556666666553   34788899999999999999 9999999999985  554 6778889999999999999999999


Q ss_pred             HhhHCCCCcChHHHHHHHHHHHhc---------CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc--------CCHHH
Q 038516          545 QMKEHSLIPGHKHYSCMVSLLSRA---------GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK--------RNSRM  606 (708)
Q Consensus       545 ~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~--------~~~~~  606 (708)
                      +..+  +.|+...+..++..|...         |++++|.+.++++ ...+.+...|..++.++...        |++++
T Consensus       162 ~al~--~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~  239 (474)
T 4abn_A          162 GALT--HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ  239 (474)
T ss_dssp             HHHT--TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHh--hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence            9997  557778899999999999         9999999999998 33335688999999999988        99999


Q ss_pred             HHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          607 VIQAAEQVLRLDP---EDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       607 a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      |+..++++++++|   +++.+|..++.+|...|++++|.+.++++.+.
T Consensus       240 A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l  287 (474)
T 4abn_A          240 ALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL  287 (474)
T ss_dssp             HHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999   99999999999999999999999999998764

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.41  E-value=6.9e-12  Score=112.98  Aligned_cols=166  Identities=13%  Similarity=0.085  Sum_probs=143.8

Q ss_pred             chhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHH
Q 038516          453 EMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLS  528 (708)
Q Consensus       453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~  528 (708)
                      +..+|..+...|.+.|++++|++.|++.+   +.+..+|..+...|.+.|++++|+..+++....  .| +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHHH
Confidence            56678889999999999999999999875   457888999999999999999999999999885  44 4556777777


Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM  606 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~  606 (708)
                      .+...++++.|...+.+..+  ..| +...+..++..|.+.|++++|++.++++ ...|.+...|..++.++...|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            88999999999999999887  334 4677888999999999999999999987 3343578899999999999999999


Q ss_pred             HHHHHHHHHhcCCCCc
Q 038516          607 VIQAAEQVLRLDPEDG  622 (708)
Q Consensus       607 a~~~~~~~~~~~p~~~  622 (708)
                      |+..++++++++|+++
T Consensus       160 A~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          160 AVKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHhCCccCH
Confidence            9999999999999864

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.39  E-value=5.4e-10  Score=119.84  Aligned_cols=218  Identities=7%  Similarity=-0.045  Sum_probs=160.5

Q ss_pred             HHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHH-HHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhC
Q 038516          402 CAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGE-MIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQV  480 (708)
Q Consensus       402 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  480 (708)
                      .+..+|++.+.. .+-....|.....-+...|+.+.|. .+++..... .+.+...+-.++....+.|+++.|.++|+.+
T Consensus       327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          327 RMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            345567666654 2334556666666666778888886 999988764 3556667778888888999999999999887


Q ss_pred             CC-------------CC------------hHHHHHHHHHHHhcCChHHHHHHHHHHHHC-CCCCChHHHHHHHHHHhc-c
Q 038516          481 LH-------------PD------------LKCWNALLGGYSHYGMAEEAFMVFEVILEH-GLRPDEITFLSLLSACSH-S  533 (708)
Q Consensus       481 ~~-------------~~------------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~-~  533 (708)
                      ..             |+            ...|...+....+.|+.+.|..+|.++.+. + .+....|......-.+ .
T Consensus       405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhC
Confidence            52             32            236888888888899999999999999885 2 1123333322222223 3


Q ss_pred             CcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC----CHHHHHHHHHHHHhcCCHHHHHH
Q 038516          534 GLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI----RIELWRTLLSTCVAKRNSRMVIQ  609 (708)
Q Consensus       534 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~  609 (708)
                      ++.+.|.++|+...+. ..-+...+...++.....|+.+.|..+|+++....|    ...+|...+..-...|+.+.+..
T Consensus       484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5689999999999885 223455667888888899999999999999844333    35678888888889999999999


Q ss_pred             HHHHHHhcCCCCcc
Q 038516          610 AAEQVLRLDPEDGT  623 (708)
Q Consensus       610 ~~~~~~~~~p~~~~  623 (708)
                      +.+++.+..|+++.
T Consensus       563 v~~R~~~~~P~~~~  576 (679)
T 4e6h_A          563 LEKRFFEKFPEVNK  576 (679)
T ss_dssp             HHHHHHHHSTTCCH
T ss_pred             HHHHHHHhCCCCcH
Confidence            99999999999865

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.39  E-value=8.3e-12  Score=128.44  Aligned_cols=154  Identities=15%  Similarity=0.026  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcC-h
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGL-RPD----EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIPG-H  555 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~  555 (708)
                      .++..+...|...|++++|...+++..+... .++    ..++..+...+...|++++|...+++..+.    +..+. .
T Consensus       188 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  267 (406)
T 3sf4_A          188 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  267 (406)
T ss_dssp             HHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence            4677778888888888888888888775310 122    235777777888899999999999887753    11111 4


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------C
Q 038516          556 KHYSCMVSLLSRAGLLDEAENLIAES----PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE------D  621 (708)
Q Consensus       556 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~  621 (708)
                      .++..++..|...|++++|...++++    +.. ++    ...+..+...+...|++++|...+++++++.+.      .
T Consensus       268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  346 (406)
T 3sf4_A          268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL-NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGE  346 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcch
Confidence            56778899999999999999998876    111 12    556788888899999999999999999987433      3


Q ss_pred             cchHHHHHHHHHhcCCchH
Q 038516          622 GTTHILLSNLYAATGRWDC  640 (708)
Q Consensus       622 ~~~~~~l~~~~~~~g~~~e  640 (708)
                      ..++..++.+|...|+...
T Consensus       347 ~~~~~~l~~~~~~~g~~~~  365 (406)
T 3sf4_A          347 LTARLNLSDLQMVLGLSYS  365 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHHHHHHHhhHhHH
Confidence            5568889999999887743

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.35  E-value=1.4e-09  Score=116.71  Aligned_cols=437  Identities=9%  Similarity=0.001  Sum_probs=280.2

Q ss_pred             ChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCC---hHHHHH
Q 038516          196 KMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSD---TQTAFS  272 (708)
Q Consensus       196 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~  272 (708)
                      ...+.+..|++.+..+ +-|..+|..++..+.+.+.++.+..+|+.++.. .+.....|...+..-.+.|.   .+.+..
T Consensus        47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            4555565666665543 347888999999998889999999999999887 46677888888888888888   999999


Q ss_pred             HHhccCC-----CChhHHHHHHHHHHcCCCc--------hHHHHHHHHHHHcCCC-CCC-HhHHHHHHHHHcC-------
Q 038516          273 VFTRIEN-----PDLVSWNSMIAGYMENGNG--------EKAVDMFVALRRMSLL-KPD-EYTFAAIISATSA-------  330 (708)
Q Consensus       273 ~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~A~~~~~~m~~~~~~-~p~-~~t~~~ll~~~~~-------  330 (708)
                      +|++...     |++..|...+.-..+.++.        +...++|+.....-|. .|+ ...|...+.....       
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~  204 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF  204 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence            9988764     6777787777655555443        2334677766655455 443 3455555544332       


Q ss_pred             --CCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHH
Q 038516          331 --LPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFC  408 (708)
Q Consensus       331 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~  408 (708)
                        .++++.+..+|..++......-..+|......-...+ ...+.+++.+.                 ..+++.|...+.
T Consensus       205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e~-----------------~~~y~~Ar~~~~  266 (679)
T 4e6h_A          205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGEL-----------------SAQYMNARSLYQ  266 (679)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHHH-----------------HHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHHh-----------------hHHHHHHHHHHH
Confidence              1234556667766663211112233332222111111 11122221110                 112233333333


Q ss_pred             HHhH--CCC----c-----------c-----C---HHHHHHHHHHHhCcc-------cHHHHHHHHHHHHHhCCCCchhH
Q 038516          409 KMCR--EGL----K-----------C-----D---NFALSGALSACADLA-------ILKQGEMIHSQAEKTGHGVEMSV  456 (708)
Q Consensus       409 ~m~~--~g~----~-----------p-----~---~~t~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~  456 (708)
                      ++..  .++    +           |     +   ...|...+.--...+       ..+....+++..... ++....+
T Consensus       267 e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~l  345 (679)
T 4e6h_A          267 DWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEI  345 (679)
T ss_dssp             HHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHH
T ss_pred             HHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHH
Confidence            3211  011    0           1     0   012222222221111       123445667766654 3457778


Q ss_pred             HHHHHHhhHhcCCHHHHH-HHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---------CCC----
Q 038516          457 CGSLVDMYAKNGDLRAAE-SIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGL---------RPD----  519 (708)
Q Consensus       457 ~~~l~~~~~~~g~~~~A~-~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---------~p~----  519 (708)
                      |-..+..+...|+.++|. ++|++..   +.+...|-..+....+.|++++|.++|++++....         .|+    
T Consensus       346 W~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~  425 (679)
T 4e6h_A          346 WFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESA  425 (679)
T ss_dssp             HHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhh
Confidence            888888888899999996 9998874   45667788889999999999999999999987410         142    


Q ss_pred             --------hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcC-CHHHHHHHHHhCC-CCCCCHH
Q 038516          520 --------EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAG-LLDEAENLIAESP-YSEIRIE  589 (708)
Q Consensus       520 --------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~~~~~  589 (708)
                              ...|...+....+.|..+.|..+|.++.+....+....|...+..-.+.| +.+.|.++|+.+. .-+.+..
T Consensus       426 ~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~  505 (679)
T 4e6h_A          426 INQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE  505 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH
T ss_pred             hhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH
Confidence                    23577777777788999999999999987511123444544444444554 5899999998872 2224677


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE---DGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      .|...+......|+.+.|..+|++++...|+   ....|......-...|+.+.+..+.+++.+.-+
T Consensus       506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P  572 (679)
T 4e6h_A          506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP  572 (679)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            8888888888899999999999999998884   446688888888889999999999999876543

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.34  E-value=4.1e-12  Score=131.06  Aligned_cols=269  Identities=14%  Similarity=0.030  Sum_probs=171.8

Q ss_pred             HHHHHHHHHcCCCCccchHHHHHHHHHHCCCCch----hHHhHHHHHHHhcCCChhHHHHHhhcCCC---------CEee
Q 038516          320 TFAAIISATSALPASAYGKPLHALVIKTGYDSSV----FVGTTLLNMYFKNGDAESPQKVFMLIAEK---------DIVL  386 (708)
Q Consensus       320 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~---------~~~~  386 (708)
                      .+..+...+...|+++.|...++.+++.+ +.+.    .++..+...|...|++++|...+++..+.         ...+
T Consensus        50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            34445556677777777777777777764 2222    35566666666667766666666543221         1223


Q ss_pred             ehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCC-CCchhHHHHHHHhhH
Q 038516          387 WTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGH-GVEMSVCGSLVDMYA  465 (708)
Q Consensus       387 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~  465 (708)
                      +..+...|...|++++|...+++..+..                               ...+- +.....+..+...|.
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~  177 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYH  177 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHH
Confidence            4444444444555555555444433210                               00010 112334555666666


Q ss_pred             hcCC-----------------HHHHHHHHhhCCC---------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-C
Q 038516          466 KNGD-----------------LRAAESIFSQVLH---------PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR-P  518 (708)
Q Consensus       466 ~~g~-----------------~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p  518 (708)
                      ..|+                 +++|.+.+++...         ....++..+...|...|++++|+..+++..+.... +
T Consensus       178 ~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (411)
T 4a1s_A          178 AKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFG  257 (411)
T ss_dssp             HHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             HcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcC
Confidence            6666                 6666666655421         12346777888888999999999999888763110 1


Q ss_pred             C----hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCC-cChHHHHHHHHHHHhcCCHHHHHHHHHhCC----C--
Q 038516          519 D----EITFLSLLSACSHSGLVERGKILWNQMKEH----SLI-PGHKHYSCMVSLLSRAGLLDEAENLIAESP----Y--  583 (708)
Q Consensus       519 ~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~--  583 (708)
                      +    ...+..+...+...|++++|...+++..+.    +.. .....+..++..|...|++++|...++++.    .  
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  337 (411)
T 4a1s_A          258 DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG  337 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence            2    125777788899999999999999888764    111 124677888999999999999999998861    1  


Q ss_pred             -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          584 -SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       584 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                       .......+..+...+...|++++|...+++++++.+.
T Consensus       338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  375 (411)
T 4a1s_A          338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX  375 (411)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred             ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence             1012446778888899999999999999999988764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.32  E-value=4.3e-11  Score=107.72  Aligned_cols=161  Identities=18%  Similarity=0.120  Sum_probs=99.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhc
Q 038516          489 NALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRA  568 (708)
Q Consensus       489 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  568 (708)
                      ..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...
T Consensus        12 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~   89 (186)
T 3as5_A           12 RDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQV   89 (186)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHh
Confidence            333444444444444444444444321 1133334444444555555555555555544421 11244555566666666


Q ss_pred             CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038516          569 GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       569 g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~  647 (708)
                      |++++|.+.++++ ...+.+...+..++..+...|++++|...++++++..|+++..+..++.+|...|++++|.+.+++
T Consensus        90 ~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  169 (186)
T 3as5_A           90 QKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKK  169 (186)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6666666666665 122245677777777888888888888888888888888888888888888888888888888887


Q ss_pred             HhcC
Q 038516          648 MKGS  651 (708)
Q Consensus       648 ~~~~  651 (708)
                      +.+.
T Consensus       170 ~~~~  173 (186)
T 3as5_A          170 ANEL  173 (186)
T ss_dssp             HHHH
T ss_pred             HHHc
Confidence            7654

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.32  E-value=1.1e-10  Score=114.74  Aligned_cols=217  Identities=10%  Similarity=-0.006  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHhHCCCccCHHHHHHHHHHHhC-------cccH-------HHHHHHHHHHHHhCCCCchhHHHHHHHhhHh
Q 038516          401 ECAIKLFCKMCREGLKCDNFALSGALSACAD-------LAIL-------KQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK  466 (708)
Q Consensus       401 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  466 (708)
                      ++|..+|++..... +-+...|..+...+..       .|++       ++|..+++...+.-.+.+...+..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            56666666665531 1223334434333321       2332       4555555544442112233344445555555


Q ss_pred             cCCHHHHHHHHhhCC--CC-ChH-HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH-hccCcHHHHHH
Q 038516          467 NGDLRAAESIFSQVL--HP-DLK-CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSAC-SHSGLVERGKI  541 (708)
Q Consensus       467 ~g~~~~A~~~~~~~~--~~-~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~  541 (708)
                      .|++++|..+|++.+  .| +.. .|..++..+.+.|++++|..+|+++.+.. +++...|....... ...|++++|.+
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            555555555555442  12 122 45555555555555555555555555431 11222222211111 11355555555


Q ss_pred             HHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCC---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038516          542 LWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESPY---SEI--RIELWRTLLSTCVAKRNSRMVIQAAEQVL  615 (708)
Q Consensus       542 ~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  615 (708)
                      +|++..+.  .| +...|..++..+.+.|++++|..+|+++..   .+|  ...+|..++......|+.+.|..++++++
T Consensus       191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            55554442  12 234444444455555555555555544411   011  23444444444444555555555555555


Q ss_pred             hcCCCC
Q 038516          616 RLDPED  621 (708)
Q Consensus       616 ~~~p~~  621 (708)
                      +..|++
T Consensus       269 ~~~p~~  274 (308)
T 2ond_A          269 TAFREE  274 (308)
T ss_dssp             HHTTTT
T ss_pred             HHcccc
Confidence            555543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.31  E-value=3.5e-12  Score=125.84  Aligned_cols=197  Identities=17%  Similarity=0.136  Sum_probs=116.4

Q ss_pred             hhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----------CChHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CC
Q 038516          454 MSVCGSLVDMYAKNGDLRAAESIFSQVLH-----------PDLKCWNALLGGYSHYGMAEEAFMVFEVILEH------GL  516 (708)
Q Consensus       454 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~  516 (708)
                      ...+..+...|...|++++|...|++...           ....++..+...|...|++++|...++++.+.      +-
T Consensus        69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  148 (311)
T 3nf1_A           69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKD  148 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCC
Confidence            34445555556666666666666555421           12345666677777777777777777777653      11


Q ss_pred             CCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC------CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCC-----
Q 038516          517 RPD-EITFLSLLSACSHSGLVERGKILWNQMKEH------SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPY-----  583 (708)
Q Consensus       517 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----  583 (708)
                      .|+ ...+..+...+...|++++|.++++++.+.      +..|. ...+..++..|...|++++|.+.++++..     
T Consensus       149 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  228 (311)
T 3nf1_A          149 HPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHER  228 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            222 334666666777888888888888777653      11232 45677777888888888888887766521     


Q ss_pred             ----CCC-CHHH------HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          584 ----SEI-RIEL------WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       584 ----~~~-~~~~------~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                          ..+ ....      +......+...+.+.++...++++....|..+.++..++.+|...|++++|.+.+++..+
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          229 EFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             HHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             cCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                101 1111      222222333455666677778888888888888899999999999999999999987754

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.31  E-value=2.6e-11  Score=123.60  Aligned_cols=194  Identities=11%  Similarity=0.087  Sum_probs=113.3

Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCC-----CCC-----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC-CCCh----
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVL-----HPD-----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGL-RPDE----  520 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----  520 (708)
                      ++..+...|...|++++|...+.+..     .++     ..+++.+...|...|++++|+..+++..+... .++.    
T Consensus       145 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  224 (383)
T 3ulq_A          145 FFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMG  224 (383)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHH
Confidence            33444445555555555555554432     111     23556666667777777777777766664210 0111    


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhHC----CC-CcChHHHHHHHHHHHhcCCHHHHHHHHHhCC----CC-CC-CHH
Q 038516          521 ITFLSLLSACSHSGLVERGKILWNQMKEH----SL-IPGHKHYSCMVSLLSRAGLLDEAENLIAESP----YS-EI-RIE  589 (708)
Q Consensus       521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~-~~~  589 (708)
                      .++..+...|...|++++|.+.+++..+.    +. +....++..++..|.+.|++++|...++++.    .. .+ ...
T Consensus       225 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  304 (383)
T 3ulq_A          225 RTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLS  304 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            24556666777777777777777776652    22 2235566677777777777777777776651    10 01 112


Q ss_pred             HHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          590 LWRTLLSTCVAKRN---SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       590 ~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      .+..+...+...|+   .++|...+++. ...|.....+..++.+|...|++++|.+.+++..+
T Consensus       305 ~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          305 EFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            24455556666777   66666666655 33344455677788888888888888888877644

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.31  E-value=1.7e-11  Score=125.06  Aligned_cols=293  Identities=9%  Similarity=-0.038  Sum_probs=211.6

Q ss_pred             HcCCCCccchHHHHHHHHHHC--CCCc--hhHHhHHHHHHH--hcCCChhHH-----------HHHhhcCCC--CEeee-
Q 038516          328 TSALPASAYGKPLHALVIKTG--YDSS--VFVGTTLLNMYF--KNGDAESPQ-----------KVFMLIAEK--DIVLW-  387 (708)
Q Consensus       328 ~~~~~~~~~a~~~~~~~~~~~--~~~~--~~~~~~li~~~~--~~g~~~~A~-----------~~~~~~~~~--~~~~~-  387 (708)
                      +.+.++++.|..+++++.+.-  +..+  ...|-.++..-.  -.+.++.+.           +.++.+...  +...+ 
T Consensus        22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l  101 (383)
T 3ulq_A           22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL  101 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred             HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence            467899999999999987643  2233  333344433211  223333333           555554321  11111 


Q ss_pred             -----hhhHHHHhcCCChHHHHHHHHHHhHC----CCcc-CHHHHHHHHHHHhCcccHHHHHHHHHHHHHh--CCC----
Q 038516          388 -----TEMIIGHSRMGDGECAIKLFCKMCRE----GLKC-DNFALSGALSACADLAILKQGEMIHSQAEKT--GHG----  451 (708)
Q Consensus       388 -----~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~----  451 (708)
                           ......+...|++++|+..|++..+.    +-.+ ...++..+...+...|+++.|...+....+.  ...    
T Consensus       102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~  181 (383)
T 3ulq_A          102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI  181 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence                 12456678899999999999998764    2122 2356777888889999999999999887753  111    


Q ss_pred             CchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC
Q 038516          452 VEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGMAEEAFMVFEVILEH----GLRP  518 (708)
Q Consensus       452 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p  518 (708)
                      ....+++.+...|...|++++|...|++..+     ++    ..++..+...|...|++++|+..+++..+.    +..|
T Consensus       182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence            1245778889999999999999999988742     22    247888999999999999999999999872    2224


Q ss_pred             C-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCCHHH
Q 038516          519 D-EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIPGHKHYSCMVSLLSRAGL---LDEAENLIAESPYSEIRIEL  590 (708)
Q Consensus       519 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~  590 (708)
                      + ..++..+...+...|++++|...+++..+.    +.......+..+...+...|+   +++|..++++....+.....
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~  341 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDF  341 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHH
Confidence            3 456788888999999999999999998764    222223346778899999999   99999999998655334567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      +..++..|...|++++|...+++++++...
T Consensus       342 ~~~la~~y~~~g~~~~A~~~~~~al~~~~~  371 (383)
T 3ulq_A          342 AIDVAKYYHERKNFQKASAYFLKVEQVRQL  371 (383)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            888889999999999999999999886543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.29  E-value=3.6e-10  Score=111.08  Aligned_cols=215  Identities=11%  Similarity=0.108  Sum_probs=168.1

Q ss_pred             HHHHHHHHHHHHhCCCCchhHHHHHHHhhH-------hcCCH-------HHHHHHHhhCC---CC-ChHHHHHHHHHHHh
Q 038516          436 KQGEMIHSQAEKTGHGVEMSVCGSLVDMYA-------KNGDL-------RAAESIFSQVL---HP-DLKCWNALLGGYSH  497 (708)
Q Consensus       436 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~---~~-~~~~~~~li~~~~~  497 (708)
                      ++|..+++.+.... +.++..|..++..+.       +.|++       ++|..+|++.+   .| +...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            56777777777653 456677777777665       35775       89999998764   23 56689999999999


Q ss_pred             cCChHHHHHHHHHHHHCCCCCCh-H-HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH-hcCCHHHH
Q 038516          498 YGMAEEAFMVFEVILEHGLRPDE-I-TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS-RAGLLDEA  574 (708)
Q Consensus       498 ~g~~~~A~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A  574 (708)
                      .|++++|..+|+++++  +.|+. . .|..+...+.+.|++++|..+|++..+.. +++...|...+.... ..|++++|
T Consensus       112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred             cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999998  46653 3 78888888899999999999999998742 223455544443322 37999999


Q ss_pred             HHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---CCC-CcchHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          575 ENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL---DPE-DGTTHILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       575 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      ..+|+++ ...|.+...|..++..+...|+.++|..+++++++.   .|+ ....|..++..+...|++++|..+++++.
T Consensus       189 ~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          189 FKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999887 222246888999999999999999999999999995   554 66788899999999999999999999887


Q ss_pred             cCCCc
Q 038516          650 GSMLG  654 (708)
Q Consensus       650 ~~~~~  654 (708)
                      +..+.
T Consensus       269 ~~~p~  273 (308)
T 2ond_A          269 TAFRE  273 (308)
T ss_dssp             HHTTT
T ss_pred             HHccc
Confidence            75543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.29  E-value=1.5e-10  Score=108.35  Aligned_cols=205  Identities=10%  Similarity=0.061  Sum_probs=132.9

Q ss_pred             CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--CC-ChHHHHHHHHH
Q 038516          418 DNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--HP-DLKCWNALLGG  494 (708)
Q Consensus       418 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~li~~  494 (708)
                      |+..+......+...|++++|...+....+...+++...+..+..++...|++++|+..|++..  .| +...|..+...
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   85 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAA   85 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence            4456666666677777888888877777776543555555567777777777777777777664  23 45567777777


Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCC-h-------HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC---hHHHHHHHH
Q 038516          495 YSHYGMAEEAFMVFEVILEHGLRPD-E-------ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG---HKHYSCMVS  563 (708)
Q Consensus       495 ~~~~g~~~~A~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~  563 (708)
                      |...|++++|+..+++..+.  .|+ .       ..|..+...+...|++++|++.|+++.+  +.|+   ...+..++.
T Consensus        86 ~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence            77777777777777777774  443 3       2355555566777777777777777775  3444   455666666


Q ss_pred             HHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          564 LLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       564 ~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      +|...|+.     .++++. ....+...+....  ....+++++|...++++++++|+++.+...++.+..
T Consensus       162 ~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~  225 (228)
T 4i17_A          162 LFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA  225 (228)
T ss_dssp             HHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            66555432     222221 0111222232222  233456799999999999999999988888776643

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.28  E-value=1.9e-10  Score=110.12  Aligned_cols=209  Identities=11%  Similarity=0.019  Sum_probs=129.6

Q ss_pred             chhHHHHHHHhhHhcCCHHHHHHHHhhCCC--C-C---hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHH
Q 038516          453 EMSVCGSLVDMYAKNGDLRAAESIFSQVLH--P-D---LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD----EIT  522 (708)
Q Consensus       453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~  522 (708)
                      +...+-.+...+.+.|++++|+..|+.+..  | +   ...+..+..+|.+.|++++|+..|++.++.  .|+    ...
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a   91 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPRVPQA   91 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCchhHHH
Confidence            344444555555566666666666665531  2 2   345555555666666666666666666553  221    122


Q ss_pred             HHHHHHHHhc--------cCcHHHHHHHHHHhhHCCCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHH
Q 038516          523 FLSLLSACSH--------SGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRT  593 (708)
Q Consensus       523 ~~~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  593 (708)
                      +..+..++..        .|++++|...|+++.+.  .|+. .....+.......+.+                ...+..
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~----------------~~~~~~  153 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKL----------------ARKQYE  153 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHH----------------HHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHH----------------HHHHHH
Confidence            3334444444        55566666655555542  2221 1111111100000000                112356


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhc----------CCchHHHHHHHHHhcCCCccCCcee
Q 038516          594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDG---TTHILLSNLYAAT----------GRWDCVAKMRRKMKGSMLGKEPGLS  660 (708)
Q Consensus       594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~eA~~~~~~~~~~~~~~~~~~~  660 (708)
                      ++..+...|++++|+..++++++..|+++   .++..++.+|...          |++++|...++++.+..+       
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p-------  226 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP-------  226 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-------
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-------
Confidence            77888999999999999999999999954   4788999999977          999999999999876533       


Q ss_pred             EEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhhhccc
Q 038516          661 WIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDEFG  704 (708)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~  704 (708)
                                      .+|...+....+.++..++++.+.++..
T Consensus       227 ----------------~~~~~~~a~~~l~~~~~~~~~~~~~~~~  254 (261)
T 3qky_A          227 ----------------DSPLLRTAEELYTRARQRLTELEGDASL  254 (261)
T ss_dssp             ----------------TCTHHHHHHHHHHHHHHHHHHHHTCTTC
T ss_pred             ----------------CChHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence                            3778889999999999999988766543

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.26  E-value=2.1e-09  Score=108.99  Aligned_cols=258  Identities=14%  Similarity=0.008  Sum_probs=169.6

Q ss_pred             HHhcCCChHHHHHHHHHHhHCCCccCHH----HHHHHHHHHhCcccHHHHHHHHHHHHHhC--C-CC--chhHHHHHHHh
Q 038516          393 GHSRMGDGECAIKLFCKMCREGLKCDNF----ALSGALSACADLAILKQGEMIHSQAEKTG--H-GV--EMSVCGSLVDM  463 (708)
Q Consensus       393 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~-~~--~~~~~~~l~~~  463 (708)
                      .+...|++++|...+++........+..    .+..+...+...|++++|...+.......  . .+  ....+..+...
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  102 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  102 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            3445666777777766665543222221    33344455566777777777776655321  1 11  12234567777


Q ss_pred             hHhcCCHHHHHHHHhhCCC----------C-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC--C--ChHHHHHHHH
Q 038516          464 YAKNGDLRAAESIFSQVLH----------P-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR--P--DEITFLSLLS  528 (708)
Q Consensus       464 ~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p--~~~~~~~ll~  528 (708)
                      +...|++++|...+++...          | ....+..+...+...|++++|...+++.......  |  ...++..+..
T Consensus       103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  182 (373)
T 1hz4_A          103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  182 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence            8888888888888876631          1 1335666778888999999999999988864221  1  1234666777


Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCc-C-hHHHH----HHHHHHHhcCCHHHHHHHHHhCCCCCCC-----HHHHHHHHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIP-G-HKHYS----CMVSLLSRAGLLDEAENLIAESPYSEIR-----IELWRTLLST  597 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~l~~~  597 (708)
                      .+...|++++|...+++.......+ . .....    ..+..+...|++++|...+++.....+.     ...+..+...
T Consensus       183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~  262 (373)
T 1hz4_A          183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA  262 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence            8888999999999999886531111 1 11111    2334577899999999999888332121     2345667778


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          598 CVAKRNSRMVIQAAEQVLRLDPEDG------TTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       598 ~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      +...|++++|...++++++..+...      ..+..++.+|...|++++|...+++...
T Consensus       263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            8889999999999999887644322      3567788999999999999998887754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.25  E-value=1.3e-11  Score=121.82  Aligned_cols=200  Identities=15%  Similarity=0.083  Sum_probs=120.0

Q ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----------
Q 038516          421 ALSGALSACADLAILKQGEMIHSQAEKT------GH-GVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----------  482 (708)
Q Consensus       421 t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------  482 (708)
                      .+..+...+...|++++|...+....+.      +- +.....+..+...|...|++++|...|++...           
T Consensus        71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~  150 (311)
T 3nf1_A           71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP  150 (311)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence            4444445555555555555555554432      11 22345566667777777777777777766531           


Q ss_pred             CChHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC------
Q 038516          483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEH------GLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH------  549 (708)
Q Consensus       483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------  549 (708)
                      .....+..+...+...|++++|+.+++++.+.      +-.|+ ..++..+...+...|++++|.+.++++.+.      
T Consensus       151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  230 (311)
T 3nf1_A          151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREF  230 (311)
T ss_dssp             HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC
Confidence            12345777778888888888888888888764      21332 345667777888889999998888888752      


Q ss_pred             -CCCcC-------hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          550 -SLIPG-------HKHYSCMVSLLSRAGLLDEAENLIAESPYSE-IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       550 -~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                       ...+.       ...+..+...+...+.+.+|...++...... ....++..++..|...|++++|...+++++++.|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          231 GSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             C------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             CCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence             11111       1223333444555666667777777764332 34667888999999999999999999999998775

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.25  E-value=4.2e-10  Score=101.11  Aligned_cols=169  Identities=14%  Similarity=0.004  Sum_probs=143.7

Q ss_pred             hhHHHHHHHhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH
Q 038516          454 MSVCGSLVDMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSAC  530 (708)
Q Consensus       454 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  530 (708)
                      ...+..+...+...|++++|...|+++..   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            34556777888899999999999999863   467889999999999999999999999999862 33567788888899


Q ss_pred             hccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038516          531 SHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQ  609 (708)
Q Consensus       531 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~  609 (708)
                      ...|++++|.+.++++.+. .+.+...+..++..+...|++++|.+.++++ ...+.+...+..++..+...|+.++|..
T Consensus        87 ~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEA-NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhc-CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHH
Confidence            9999999999999999874 2235677888999999999999999999887 2233468889999999999999999999


Q ss_pred             HHHHHHhcCCCCcch
Q 038516          610 AAEQVLRLDPEDGTT  624 (708)
Q Consensus       610 ~~~~~~~~~p~~~~~  624 (708)
                      .++++++..|++...
T Consensus       166 ~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          166 HFKKANELDEGASVE  180 (186)
T ss_dssp             HHHHHHHHHHCCCGG
T ss_pred             HHHHHHHcCCCchhh
Confidence            999999999987653

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.24  E-value=7.6e-11  Score=117.54  Aligned_cols=227  Identities=12%  Similarity=0.023  Sum_probs=179.2

Q ss_pred             HHHHHHHhCcccHHHHHHHHHHHHHhCCCCc---hhHHHHHHHhhHhcCCHHHHHHHHhhCCC---------CChHHHHH
Q 038516          423 SGALSACADLAILKQGEMIHSQAEKTGHGVE---MSVCGSLVDMYAKNGDLRAAESIFSQVLH---------PDLKCWNA  490 (708)
Q Consensus       423 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~  490 (708)
                      ......+...|++++|...++.+.+......   ...+..+...+...|++++|.+.+++...         ....++..
T Consensus         9 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A            9 ALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            3344557789999999999999988743221   46778899999999999999999987631         12557888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhccCc--------------------HHHHHHHHHH
Q 038516          491 LLGGYSHYGMAEEAFMVFEVILEHGL-RPD----EITFLSLLSACSHSGL--------------------VERGKILWNQ  545 (708)
Q Consensus       491 li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~  545 (708)
                      +...|...|++++|...+++..+... .++    ..++..+...+...|+                    +++|.+.+++
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  168 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE  168 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            89999999999999999999876311 122    2367777788999999                    9999999988


Q ss_pred             hhHC----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516          546 MKEH----SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAE  612 (708)
Q Consensus       546 ~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~  612 (708)
                      ..+.    +..|. ...+..++..+...|++++|...++++    +.. ++    ...+..++..+...|++++|...++
T Consensus       169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  247 (338)
T 3ro2_A          169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF-GDKAAERRAYSNLGNAYIFLGEFETASEYYK  247 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            7653    22222 456888899999999999999999886    111 12    3367888888999999999999999


Q ss_pred             HHHhcCCCC------cchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          613 QVLRLDPED------GTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       613 ~~~~~~p~~------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      +++++.|+.      ...+..++.+|...|++++|...++++.+
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  291 (338)
T 3ro2_A          248 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA  291 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            999887665      55788999999999999999999998765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.19  E-value=3.1e-10  Score=115.34  Aligned_cols=221  Identities=16%  Similarity=0.107  Sum_probs=151.0

Q ss_pred             HhCcccHHHHHHHHHHHHHhC--CC---CchhHHHHHHHhhHhcCCHHHHHHHHhhCC-----CCC-----hHHHHHHHH
Q 038516          429 CADLAILKQGEMIHSQAEKTG--HG---VEMSVCGSLVDMYAKNGDLRAAESIFSQVL-----HPD-----LKCWNALLG  493 (708)
Q Consensus       429 ~~~~~~~~~a~~~~~~~~~~~--~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~  493 (708)
                      +...|++++|...+....+..  ..   ....++..+...|...|+++.|...+.+..     .++     ..+++.+..
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  190 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG  190 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence            345566666666666554321  11   123456667777888888888877776653     111     346778888


Q ss_pred             HHHhcCChHHHHHHHHHHHHCCC-CCC----hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcChHHHHHHHHH
Q 038516          494 GYSHYGMAEEAFMVFEVILEHGL-RPD----EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIPGHKHYSCMVSL  564 (708)
Q Consensus       494 ~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~  564 (708)
                      .|...|++++|.+.|++..+..- .++    ..++..+...+...|++++|.+.+++..+.    +.+....++..++..
T Consensus       191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~  270 (378)
T 3q15_A          191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT  270 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence            88999999999999888876310 112    235667777888999999999999988762    222236678888999


Q ss_pred             HHhcCCHHHHHHHHHhC----CC-CCCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516          565 LSRAGLLDEAENLIAES----PY-SEIR-IELWRTLLSTCVAKRN---SRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~----~~-~~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  635 (708)
                      +.+.|++++|...++++    .. ..+. ...+..+...+...++   +++|...+++. ...|.....+..++.+|...
T Consensus       271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~  349 (378)
T 3q15_A          271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS  349 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence            99999999999998886    21 1122 3345555556667777   77777777652 23344455677899999999


Q ss_pred             CCchHHHHHHHHHhc
Q 038516          636 GRWDCVAKMRRKMKG  650 (708)
Q Consensus       636 g~~~eA~~~~~~~~~  650 (708)
                      |++++|.+.+++..+
T Consensus       350 g~~~~A~~~~~~al~  364 (378)
T 3q15_A          350 CHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            999999999887753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.18  E-value=1.3e-09  Score=110.80  Aligned_cols=226  Identities=10%  Similarity=-0.028  Sum_probs=165.6

Q ss_pred             HHHHhcCCChHHHHHHHHHHhHCCC-ccC----HHHHHHHHHHHhCcccHHHHHHHHHHHHHh--CC---C-CchhHHHH
Q 038516          391 IIGHSRMGDGECAIKLFCKMCREGL-KCD----NFALSGALSACADLAILKQGEMIHSQAEKT--GH---G-VEMSVCGS  459 (708)
Q Consensus       391 i~~~~~~~~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~---~-~~~~~~~~  459 (708)
                      ...+...|++++|+..|++..+... .++    ..++..+...+...|+++.|...+....+.  ..   . ....+++.
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            3445667778888887777664311 122    235566666777788888888877766542  11   1 12456778


Q ss_pred             HHHhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHH-----CCCCCChHHHHH
Q 038516          460 LVDMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGMAEEAFMVFEVILE-----HGLRPDEITFLS  525 (708)
Q Consensus       460 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~  525 (708)
                      +...|...|++++|.+.|++..+     ++    ..+++.+...|...|++++|+..+++..+     .. +....++..
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~  266 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFG  266 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHH
Confidence            88889999999999998887642     22    34678889999999999999999999987     32 222556777


Q ss_pred             HHHHHhccCcHHHHHHHHHHhhHC----CCCcChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCCHHHHHHHHHHH
Q 038516          526 LLSACSHSGLVERGKILWNQMKEH----SLIPGHKHYSCMVSLLSRAGL---LDEAENLIAESPYSEIRIELWRTLLSTC  598 (708)
Q Consensus       526 ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~l~~~~  598 (708)
                      +...+.+.|++++|..++++..+.    +.......+..+...+...|+   +++|..++++....+.....+..++..|
T Consensus       267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y  346 (378)
T 3q15_A          267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVF  346 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHH
Confidence            888999999999999999998874    122224456777778888888   8999999998754423355677788889


Q ss_pred             HhcCCHHHHHHHHHHHHhc
Q 038516          599 VAKRNSRMVIQAAEQVLRL  617 (708)
Q Consensus       599 ~~~~~~~~a~~~~~~~~~~  617 (708)
                      ...|++++|...++++++.
T Consensus       347 ~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          347 ESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH
Confidence            9999999999999998865

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.17  E-value=3.7e-09  Score=100.33  Aligned_cols=177  Identities=9%  Similarity=-0.048  Sum_probs=124.6

Q ss_pred             HHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhH
Q 038516          473 AESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKE  548 (708)
Q Consensus       473 A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  548 (708)
                      |+..|++..   .++..++..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            566666654   3455556677788888888888888888887654322 345566777788888888888888888876


Q ss_pred             CCCCc-----ChHHHHHHHHH--HHhcC--CHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--
Q 038516          549 HSLIP-----GHKHYSCMVSL--LSRAG--LLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRL--  617 (708)
Q Consensus       549 ~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--  617 (708)
                        ..|     +..+...|+.+  ....|  ++.+|..+|+++....|+......++.++...|++++|+..++.+.++  
T Consensus       165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p  242 (310)
T 3mv2_B          165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY  242 (310)
T ss_dssp             --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred             --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence              455     24444445444  33334  888888888888655565333344444777888888888888877765  


Q ss_pred             --------CCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          618 --------DPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       618 --------~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                              +|+++.++..++.+....|+  +|.++++++++..+
T Consensus       243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH  284 (310)
T ss_dssp             HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred             cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence                    48888888777777777887  88888888877543

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.15  E-value=3.3e-10  Score=123.14  Aligned_cols=133  Identities=17%  Similarity=0.188  Sum_probs=120.3

Q ss_pred             CCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHH
Q 038516          517 RPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRT  593 (708)
Q Consensus       517 ~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~  593 (708)
                      .|+ ...++.|...+.+.|++++|++.|++.++  +.|+ ...+..|+.+|.+.|++++|++.++++ ...+.+...|..
T Consensus         5 ~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~n   82 (723)
T 4gyw_A            5 CPTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSN   82 (723)
T ss_dssp             -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            454 56788899999999999999999999998  5565 778999999999999999999999998 334346889999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          594 LLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       594 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++.++...|++++|++.++++++++|+++.+|..||.+|...|++++|++.++++.+.
T Consensus        83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l  140 (723)
T 4gyw_A           83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKL  140 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999998764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.13  E-value=5e-10  Score=108.45  Aligned_cols=221  Identities=18%  Similarity=0.151  Sum_probs=151.2

Q ss_pred             hCcccHHHHHHHHHHHHH-------hCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--------C---CChHHHHHH
Q 038516          430 ADLAILKQGEMIHSQAEK-------TGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--------H---PDLKCWNAL  491 (708)
Q Consensus       430 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~---~~~~~~~~l  491 (708)
                      ...|++++|...++...+       ...+....++..+...|...|++++|...|++..        .   ....++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            345666666666665543       1223356778888999999999999999998764        1   134578888


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC------CCCcC-hHH
Q 038516          492 LGGYSHYGMAEEAFMVFEVILEH------GLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH------SLIPG-HKH  557 (708)
Q Consensus       492 i~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~~p~-~~~  557 (708)
                      ...|...|++++|...++++.+.      .-.|+ ...+..+...+...|++++|..+++++.+.      +..|. ...
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            89999999999999999998874      11232 455777788899999999999999988764      11332 567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCC----------CCCCCHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhcCCCC
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAESP----------YSEIRIELWRTLLSTCVAKR------NSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~~~l~~~~~~~~------~~~~a~~~~~~~~~~~p~~  621 (708)
                      +..++..|...|++++|..+++++.          ..+.....|..+.......+      .+..+...++......|..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            8888999999999999999987761          11122334444444443322      2334444444333445666


Q ss_pred             cchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          622 GTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       622 ~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      ...+..++.+|...|++++|..++++..+
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            67899999999999999999999998765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.12  E-value=4.8e-10  Score=109.10  Aligned_cols=201  Identities=11%  Similarity=0.012  Sum_probs=145.2

Q ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-------C--ChHHHHHHHHHHHhcCChHHH
Q 038516          434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-------P--DLKCWNALLGGYSHYGMAEEA  504 (708)
Q Consensus       434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A  504 (708)
                      ++++|...+...               ...|...|++++|...|.+...       +  ...+|+.+..+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777777655               3457788999999988877631       1  146788999999999999999


Q ss_pred             HHHHHHHHHCCCC-CC----hHHHHHHHHHHhcc-CcHHHHHHHHHHhhHC----CCCcC-hHHHHHHHHHHHhcCCHHH
Q 038516          505 FMVFEVILEHGLR-PD----EITFLSLLSACSHS-GLVERGKILWNQMKEH----SLIPG-HKHYSCMVSLLSRAGLLDE  573 (708)
Q Consensus       505 ~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~  573 (708)
                      +..+++.++.... .+    ..++..+...|... |++++|+..|++..+.    +..+. ..++..++..|.+.|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            9999998863111 11    34677788889886 9999999999998863    11111 3568889999999999999


Q ss_pred             HHHHHHhCCCCC---CCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHHHHH--hcCCc
Q 038516          574 AENLIAESPYSE---IRI-----ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT-----HILLSNLYA--ATGRW  638 (708)
Q Consensus       574 A~~~~~~~~~~~---~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~  638 (708)
                      |...++++....   +..     ..+..++.++...|+++.|...++++++++|+....     +..++..|.  ..+++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~  256 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence            999998872111   221     256777788889999999999999999999987654     345566664  45778


Q ss_pred             hHHHHHHHHHh
Q 038516          639 DCVAKMRRKMK  649 (708)
Q Consensus       639 ~eA~~~~~~~~  649 (708)
                      ++|...++++.
T Consensus       257 ~~A~~~~~~~~  267 (292)
T 1qqe_A          257 SEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHTTSS
T ss_pred             HHHHHHhccCC
Confidence            88888886553

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.11  E-value=1.5e-10  Score=99.74  Aligned_cols=121  Identities=16%  Similarity=0.035  Sum_probs=80.2

Q ss_pred             HHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHH
Q 038516          528 SACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSR  605 (708)
Q Consensus       528 ~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~  605 (708)
                      ..+...|++++|++.++....  ..|+ ...+..++..|.+.|++++|++.++++ ...|.++..|..++.++...|+++
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~   82 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTD   82 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchH
Confidence            345556677777777766654  3333 334455677777777777777777776 233245677777777777777777


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHH-HHHHhc
Q 038516          606 MVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKM-RRKMKG  650 (708)
Q Consensus       606 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~-~~~~~~  650 (708)
                      +|+..++++++++|+++.++..++.+|.+.|++++|.+. ++++.+
T Consensus        83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~  128 (150)
T 4ga2_A           83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK  128 (150)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            777777777777777777777777777777777766554 455554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.11  E-value=7.3e-09  Score=95.18  Aligned_cols=172  Identities=10%  Similarity=-0.011  Sum_probs=141.0

Q ss_pred             HHHHHhhCC-CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC----cHHHHHHHHHHhh
Q 038516          473 AESIFSQVL-HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSG----LVERGKILWNQMK  547 (708)
Q Consensus       473 A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~  547 (708)
                      |.+.|++.. ..++..+..+...|...+++++|+.+|++..+.|   +...+..|...|.. +    ++++|.++|++..
T Consensus         5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            444444443 3567788888888888999999999999998865   56667777777777 6    8999999999998


Q ss_pred             HCCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHh
Q 038516          548 EHSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYSEIR---IELWRTLLSTCVA----KRNSRMVIQAAEQVLR  616 (708)
Q Consensus       548 ~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~  616 (708)
                      +.|   +...+..|...|..    .+++++|.++++++....+.   +..+..|...|..    .+|.++|...++++.+
T Consensus        81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            754   45667778888887    88999999999998666453   7888899988888    7899999999999999


Q ss_pred             cCCCCcchHHHHHHHHHhc-C-----CchHHHHHHHHHhcCC
Q 038516          617 LDPEDGTTHILLSNLYAAT-G-----RWDCVAKMRRKMKGSM  652 (708)
Q Consensus       617 ~~p~~~~~~~~l~~~~~~~-g-----~~~eA~~~~~~~~~~~  652 (708)
                      + |+++..+..|+.+|... |     ++++|...+++..+.|
T Consensus       158 ~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          158 L-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             T-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             c-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            9 77788899999999864 3     8999999999988765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.10  E-value=8.1e-11  Score=101.49  Aligned_cols=140  Identities=11%  Similarity=-0.032  Sum_probs=100.3

Q ss_pred             HHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCH
Q 038516          494 GYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLL  571 (708)
Q Consensus       494 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~  571 (708)
                      .+...|++++|+..+++....  .|+ ...+..+...|.+.|++++|++.|++.++  +.|+ ...|..++.+|.+.|++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCch
Confidence            344456666666666665542  333 23345556667777777777777777766  3443 56677778888888888


Q ss_pred             HHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516          572 DEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQ-AAEQVLRLDPEDGTTHILLSNLYAATGR  637 (708)
Q Consensus       572 ~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~  637 (708)
                      ++|...++++ ...|.++..|..++..+...|+.++|.. .++++++++|+++.+|...+.++...|+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            8888888776 3333467888888888999998876555 5699999999999999999999998886

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.09  E-value=2.3e-09  Score=103.79  Aligned_cols=177  Identities=12%  Similarity=-0.007  Sum_probs=144.6

Q ss_pred             CHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhh
Q 038516          469 DLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMK  547 (708)
Q Consensus       469 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  547 (708)
                      ..+.....+....+.+...+..+...+.+.|++++|...|+++.+.  .| +...+..+...+...|++++|...++++.
T Consensus       101 ~~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~  178 (287)
T 3qou_A          101 PEEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIP  178 (287)
T ss_dssp             CHHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            3445556666666666777888888999999999999999999985  66 45667888889999999999999999987


Q ss_pred             HCCCCcChHHHHH-HHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cc
Q 038516          548 EHSLIPGHKHYSC-MVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED--GT  623 (708)
Q Consensus       548 ~~~~~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~  623 (708)
                      .  ..|+...... ....+.+.++.++|...++++ ...|.+...+..+...+...|++++|...++++++.+|++  ..
T Consensus       179 ~--~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~  256 (287)
T 3qou_A          179 L--QDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQ  256 (287)
T ss_dssp             G--GGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGH
T ss_pred             h--hhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccch
Confidence            6  4455443332 333466788888899888887 3343578899999999999999999999999999999998  88


Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          624 THILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       624 ~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      ++..|+.+|...|+.++|...+++..
T Consensus       257 a~~~l~~~~~~~g~~~~a~~~~r~al  282 (287)
T 3qou_A          257 TRXTFQEILAALGTGDALASXYRRQL  282 (287)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            89999999999999999998887654

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.09  E-value=4.7e-09  Score=97.64  Aligned_cols=179  Identities=11%  Similarity=0.052  Sum_probs=111.6

Q ss_pred             hHHHHHHHhhHhcCCHHHHHHHHhhCC--CCC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH----HHH
Q 038516          455 SVCGSLVDMYAKNGDLRAAESIFSQVL--HPD----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI----TFL  524 (708)
Q Consensus       455 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~  524 (708)
                      ..+-.+...+.+.|++++|+..|+++.  .|+    ...+..+..+|.+.|++++|+..|+++.+.  .|+..    .+.
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~   82 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMY   82 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHH
Confidence            344455666777788888888887764  232    245666777777788888888888887774  44322    233


Q ss_pred             HHHHHHhc------------------cCcHHHHHHHHHHhhHCCCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 038516          525 SLLSACSH------------------SGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLDEAENLIAESPYSE  585 (708)
Q Consensus       525 ~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  585 (708)
                      .+..++..                  .|++++|...|+++++.  .|+. ..+..+....    ......          
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~----~~~~~~----------  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLV----FLKDRL----------  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHH----HHHHHH----------
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHH----HHHHHH----------
Confidence            33333332                  34445555555554442  2221 1111100000    000000          


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG---TTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                        ......++..+...|+++.|...++++++..|+++   .++..++.+|.+.|++++|.+.++.+...++
T Consensus       147 --~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          147 --AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             --HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             --HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence              00113456678889999999999999999999986   5688999999999999999999999887654

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.08  E-value=1.2e-09  Score=106.28  Aligned_cols=243  Identities=11%  Similarity=-0.012  Sum_probs=151.4

Q ss_pred             cchHHHHHHHHHHCCCCchhHHhHHHHHHHhc--C-CChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHh
Q 038516          335 AYGKPLHALVIKTGYDSSVFVGTTLLNMYFKN--G-DAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMC  411 (708)
Q Consensus       335 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~  411 (708)
                      .+|..++.+..+.- +++...+     .+.+.  + ++++|...|...           ...|...|++++|...|++..
T Consensus         2 ~~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al   64 (292)
T 1qqe_A            2 SDPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAA   64 (292)
T ss_dssp             CCHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence            35666666666653 3222222     22232  2 477777776553           455667778888777777664


Q ss_pred             HC----CCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----
Q 038516          412 RE----GLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----  482 (708)
Q Consensus       412 ~~----g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----  482 (708)
                      ..    |-.++                                  ...+++.+..+|.+.|++++|+..|++.+.     
T Consensus        65 ~~~~~~~~~~~----------------------------------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~  110 (292)
T 1qqe_A           65 DYQKKAGNEDE----------------------------------AGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHR  110 (292)
T ss_dssp             HHHHHTTCHHH----------------------------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhCCHHH----------------------------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence            32    11111                                  123444555555555566555555554421     


Q ss_pred             CC----hHHHHHHHHHHHhc-CChHHHHHHHHHHHHCCCCCC-------hHHHHHHHHHHhccCcHHHHHHHHHHhhHCC
Q 038516          483 PD----LKCWNALLGGYSHY-GMAEEAFMVFEVILEHGLRPD-------EITFLSLLSACSHSGLVERGKILWNQMKEHS  550 (708)
Q Consensus       483 ~~----~~~~~~li~~~~~~-g~~~~A~~~~~~m~~~g~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  550 (708)
                      .+    ..+|+.+...|... |++++|+..|++..+.  .|+       ..++..+...+...|++++|+..|++..+..
T Consensus       111 g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  188 (292)
T 1qqe_A          111 GQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSS  188 (292)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            11    34677788888885 9999999999988873  221       2457777888899999999999999988752


Q ss_pred             CCc-Ch-----HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC------HHHHHHHHHHHH--hcCCHHHHHHHHHHHHh
Q 038516          551 LIP-GH-----KHYSCMVSLLSRAGLLDEAENLIAESPYSEIR------IELWRTLLSTCV--AKRNSRMVIQAAEQVLR  616 (708)
Q Consensus       551 ~~p-~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~  616 (708)
                      ... ..     ..|..++.++...|++++|...+++.....|+      ...+..++.++.  ..+++++|+..++++..
T Consensus       189 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          189 MGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             SSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             hcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            221 11     25677888889999999999999987332232      113444555554  35678999999988888


Q ss_pred             cCCCCcchHHHHHH
Q 038516          617 LDPEDGTTHILLSN  630 (708)
Q Consensus       617 ~~p~~~~~~~~l~~  630 (708)
                      ++|.....+..+-.
T Consensus       269 l~~~~~~~~~~~k~  282 (292)
T 1qqe_A          269 LDKWKITILNKIKE  282 (292)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHH
Confidence            88876554444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.08  E-value=2.6e-09  Score=102.06  Aligned_cols=204  Identities=10%  Similarity=0.036  Sum_probs=147.5

Q ss_pred             CHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCC--chhHHHHHHHhhHhcCCHHHHHHHHhhCC--CC---C-hHHHH
Q 038516          418 DNFALSGALSACADLAILKQGEMIHSQAEKTGHGV--EMSVCGSLVDMYAKNGDLRAAESIFSQVL--HP---D-LKCWN  489 (708)
Q Consensus       418 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~---~-~~~~~  489 (708)
                      +...+......+...|++++|...++.+.+.....  ....+..+..+|.+.|++++|...|+...  .|   . ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            45566667777889999999999999998764211  16677889999999999999999999885  23   2 45677


Q ss_pred             HHHHHHHh--------cCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHH
Q 038516          490 ALLGGYSH--------YGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSC  560 (708)
Q Consensus       490 ~li~~~~~--------~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~  560 (708)
                      .+..++..        .|++++|+..|+++++.  .|+.. ....+..              +..+...    -...+..
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~~  153 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQYE  153 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHHHH
Confidence            78888888        99999999999999985  56532 2221111              1111100    0122556


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC----CCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhcCCCCcch--
Q 038516          561 MVSLLSRAGLLDEAENLIAES----PYSEIRIELWRTLLSTCVAK----------RNSRMVIQAAEQVLRLDPEDGTT--  624 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~--  624 (708)
                      ++..|.+.|++++|...++++    |..+.....+..++.++...          |++++|...++++++..|+++.+  
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  233 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRT  233 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHH
Confidence            788899999999999999887    33312356777777777765          89999999999999999999743  


Q ss_pred             -HHHHHHHHHhcCCchHH
Q 038516          625 -HILLSNLYAATGRWDCV  641 (708)
Q Consensus       625 -~~~l~~~~~~~g~~~eA  641 (708)
                       ...+..++...|+++++
T Consensus       234 a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          234 AEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhhhh
Confidence             44666666666655543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.07  E-value=1.8e-09  Score=118.12  Aligned_cols=168  Identities=9%  Similarity=-0.043  Sum_probs=89.3

Q ss_pred             HhcCCHHHHHHHHhhCC-----------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhc
Q 038516          465 AKNGDLRAAESIFSQVL-----------HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSH  532 (708)
Q Consensus       465 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~  532 (708)
                      ...|++++|++.|++..           +.+...|..+...+...|++++|+..|+++.+.  .| +...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            34455555555555443           233445555555555666666666666665553  33 33445555555555


Q ss_pred             cCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038516          533 SGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQA  610 (708)
Q Consensus       533 ~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  610 (708)
                      .|++++|.+.|+++.+  +.| +...+..++.+|.+.|++++ ++.++++ ...+.+...|..++.++...|++++|+..
T Consensus       480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6666666666665554  233 24445555556666666665 5555554 22223455555555556666666666666


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516          611 AEQVLRLDPEDGTTHILLSNLYAATGR  637 (708)
Q Consensus       611 ~~~~~~~~p~~~~~~~~l~~~~~~~g~  637 (708)
                      ++++++++|++..++..++.+|...|+
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCC
Confidence            666666666665556666655544443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.06  E-value=1.3e-09  Score=90.49  Aligned_cols=101  Identities=11%  Similarity=0.038  Sum_probs=83.0

Q ss_pred             CCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516          551 LIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL  628 (708)
Q Consensus       551 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  628 (708)
                      +.|+ ...+...+..|.+.|++++|++.|+++ ...|.+...|..++.++...|++++|+..++++++++|+++.+|..+
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l   87 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK   87 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence            4554 456777888888888888888888887 33335678888888888889999999999999999999998889999


Q ss_pred             HHHHHhcCCchHHHHHHHHHhcC
Q 038516          629 SNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       629 ~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      |.+|...|++++|.+.+++..+.
T Consensus        88 g~~~~~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           88 AACLVAMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999998888763

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.04  E-value=1.1e-09  Score=93.64  Aligned_cols=103  Identities=10%  Similarity=-0.048  Sum_probs=92.1

Q ss_pred             CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516          550 SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL  627 (708)
Q Consensus       550 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  627 (708)
                      .+.|+ ...+..++..+.+.|++++|...|+++ ...|.++..|..++.++...|++++|+..++++++++|+++.+|..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            35564 567888899999999999999999998 3343578999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          628 LSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       628 l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      +|.+|...|++++|...++++.+..
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l~  134 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQHS  134 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            9999999999999999999987753

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.02  E-value=1.1e-09  Score=93.94  Aligned_cols=107  Identities=7%  Similarity=-0.014  Sum_probs=91.9

Q ss_pred             HHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          543 WNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       543 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      |+++.+  +.|+ ...+..++..+.+.|++++|...++++ ...+.+...|..++.++...|++++|+..++++++++|+
T Consensus        10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~   87 (148)
T 2vgx_A           10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX   87 (148)
T ss_dssp             HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            444443  4453 566777889999999999999999987 334357889999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          621 DGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       621 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++.++..++.+|...|++++|...+++..+.
T Consensus        88 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           88 EPRFPFHAAECLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999988764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.01  E-value=5.3e-08  Score=98.56  Aligned_cols=222  Identities=9%  Similarity=-0.009  Sum_probs=165.1

Q ss_pred             HHhCcccHHHHHHHHHHHHHhCCCCch----hHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CCh----HHHHHHHHH
Q 038516          428 ACADLAILKQGEMIHSQAEKTGHGVEM----SVCGSLVDMYAKNGDLRAAESIFSQVLH-----PDL----KCWNALLGG  494 (708)
Q Consensus       428 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~----~~~~~li~~  494 (708)
                      .+...|++++|...++......-..+.    ..++.+...+...|++++|...+++...     .+.    .++..+...
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  102 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  102 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence            455789999999999988775422222    2556777888899999999999987741     222    335677888


Q ss_pred             HHhcCChHHHHHHHHHHHHC----CCC--CC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC--CCCc--ChHHHHHHHH
Q 038516          495 YSHYGMAEEAFMVFEVILEH----GLR--PD-EITFLSLLSACSHSGLVERGKILWNQMKEH--SLIP--GHKHYSCMVS  563 (708)
Q Consensus       495 ~~~~g~~~~A~~~~~~m~~~----g~~--p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~p--~~~~~~~l~~  563 (708)
                      +...|++++|...+++..+.    +..  |. ...+..+...+...|++++|...+++..+.  ...+  ....+..+..
T Consensus       103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  182 (373)
T 1hz4_A          103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  182 (373)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence            99999999999999998763    211  32 234566777889999999999999998764  1112  2456778899


Q ss_pred             HHHhcCCHHHHHHHHHhC----CCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc----hHHHHHH
Q 038516          564 LLSRAGLLDEAENLIAES----PYSEIRIELWR-----TLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT----THILLSN  630 (708)
Q Consensus       564 ~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~  630 (708)
                      .+...|++++|...++++    +.. .....|.     ..+..+...|+.++|...++++++..|.+..    .+..++.
T Consensus       183 ~~~~~g~~~~A~~~l~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~  261 (373)
T 1hz4_A          183 CSLARGDLDNARSQLNRLENLLGNG-KYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  261 (373)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhcc-CcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence            999999999999999876    221 1112222     2234467899999999999999987775422    4678899


Q ss_pred             HHHhcCCchHHHHHHHHHhc
Q 038516          631 LYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       631 ~~~~~g~~~eA~~~~~~~~~  650 (708)
                      ++...|++++|...++++..
T Consensus       262 ~~~~~g~~~~A~~~l~~a~~  281 (373)
T 1hz4_A          262 AQILLGEFEPAEIVLEELNE  281 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            99999999999999988754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.00  E-value=5.8e-09  Score=87.79  Aligned_cols=94  Identities=19%  Similarity=0.243  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  635 (708)
                      .+..++..+...|++++|...++++ ...+.+...+..++..+...|++++|...++++++..|++...+..++.+|...
T Consensus        37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  116 (136)
T 2fo7_A           37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ  116 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            3444445555555555555555444 111134556666666677777777777777777777777777777777778888


Q ss_pred             CCchHHHHHHHHHhc
Q 038516          636 GRWDCVAKMRRKMKG  650 (708)
Q Consensus       636 g~~~eA~~~~~~~~~  650 (708)
                      |++++|.+.++++..
T Consensus       117 ~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A          117 GDYDEAIEYYQKALE  131 (136)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHc
Confidence            888888777777654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.00  E-value=1.9e-08  Score=95.51  Aligned_cols=195  Identities=10%  Similarity=0.006  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC-----CChHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 038516          438 GEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH-----PDLKCWNALLGGYSHYGMAEEAFMVFEVIL  512 (708)
Q Consensus       438 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  512 (708)
                      +...++.....+ .++...+..+..++...|++++|++++.+.+.     .+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            445555554443 34445555778888899999999999988743     245677788899999999999999999998


Q ss_pred             HCCCCC-----ChHHHHHHHHHH--hc--cCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCC
Q 038516          513 EHGLRP-----DEITFLSLLSAC--SH--SGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPY  583 (708)
Q Consensus       513 ~~g~~p-----~~~~~~~ll~~~--~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  583 (708)
                      +.  .|     +..+...|..++  ..  .+++++|..+|+++.+.  .|+...-..+..++.+.|++++|++.++.+..
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            84  77     356666666553  22  34899999999998763  35433333444589999999999999986522


Q ss_pred             -----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          584 -----------SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       584 -----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                                 .+.++.++..++......|+  .|.++++++.+.+|+++.+..           +.+....|+++..
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d-----------~~~k~~~Fd~~~~  304 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIKH-----------HQEIDAKFDELVR  304 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHH-----------HHHHHHHHHHHHH
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHH-----------HHHHHHHHHHHHH
Confidence                       23567777677666666787  899999999999999986543           4445555665544

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.99  E-value=3.3e-09  Score=94.31  Aligned_cols=156  Identities=12%  Similarity=0.076  Sum_probs=96.1

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH-HHhc
Q 038516          491 LLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL-LSRA  568 (708)
Q Consensus       491 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~  568 (708)
                      +...+.+.|++++|+..|++..+.  .| +...+..+...+...|++++|...++++.+.  .|+...+..+... +...
T Consensus        12 ~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           12 QVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence            334444555555555555554442  23 2333444444555555555555555554432  2222222111111 1122


Q ss_pred             CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--cchHHHHHHHHHhcCCchHHHHHH
Q 038516          569 GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED--GTTHILLSNLYAATGRWDCVAKMR  645 (708)
Q Consensus       569 g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~eA~~~~  645 (708)
                      +...+|...++++ ...|.+...+..+...+...|++++|...++++++.+|+.  +..+..++.+|...|+.++|...+
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y  167 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY  167 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            2223456666665 2232468889999999999999999999999999999986  558999999999999999999998


Q ss_pred             HHHhc
Q 038516          646 RKMKG  650 (708)
Q Consensus       646 ~~~~~  650 (708)
                      ++...
T Consensus       168 ~~al~  172 (176)
T 2r5s_A          168 RRQLY  172 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.99  E-value=5.3e-09  Score=101.12  Aligned_cols=215  Identities=15%  Similarity=0.057  Sum_probs=137.2

Q ss_pred             HHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHh------CC-CCchhHHHHHHHhhHhcCCHHHHHH
Q 038516          403 AIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKT------GH-GVEMSVCGSLVDMYAKNGDLRAAES  475 (708)
Q Consensus       403 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~  475 (708)
                      |++++++......+....++..+...+...|++++|...+..+.+.      +- +....++..+...|...|++++|..
T Consensus        27 al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  106 (283)
T 3edt_B           27 ALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEP  106 (283)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHH
Confidence            4444444433222233445666666677777777777777666543      22 2235567778888888888888888


Q ss_pred             HHhhCCC-------C----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHC------CCCCC-hHHHHHHHHHHhccCcHH
Q 038516          476 IFSQVLH-------P----DLKCWNALLGGYSHYGMAEEAFMVFEVILEH------GLRPD-EITFLSLLSACSHSGLVE  537 (708)
Q Consensus       476 ~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~-~~~~~~ll~~~~~~~~~~  537 (708)
                      .|.+...       +    ...++..+...|...|++++|...++++.+.      +-.|+ ..++..+...+...|+++
T Consensus       107 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  186 (283)
T 3edt_B          107 LCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQ  186 (283)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHH
Confidence            8877631       1    2456788888899999999999999998874      11332 355777888899999999


Q ss_pred             HHHHHHHHhhHC-------CCCcC-hHHHHHHHHHHHhcC------CHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcC
Q 038516          538 RGKILWNQMKEH-------SLIPG-HKHYSCMVSLLSRAG------LLDEAENLIAESPYSEI-RIELWRTLLSTCVAKR  602 (708)
Q Consensus       538 ~a~~~~~~~~~~-------~~~p~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  602 (708)
                      +|..+++++.+.       ...+. ...+..+...+...+      .+.++...++......| ....+..++..+...|
T Consensus       187 ~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g  266 (283)
T 3edt_B          187 DAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQG  266 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcC
Confidence            999999988763       11222 233443444444333      34445555555543322 3556888889999999


Q ss_pred             CHHHHHHHHHHHHhc
Q 038516          603 NSRMVIQAAEQVLRL  617 (708)
Q Consensus       603 ~~~~a~~~~~~~~~~  617 (708)
                      ++++|...++++++.
T Consensus       267 ~~~~A~~~~~~al~~  281 (283)
T 3edt_B          267 KLEAAHTLEDCASRN  281 (283)
T ss_dssp             CHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHh
Confidence            999999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.97  E-value=1.2e-08  Score=93.45  Aligned_cols=122  Identities=7%  Similarity=-0.013  Sum_probs=55.4

Q ss_pred             HHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcC-
Q 038516          526 LLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKR-  602 (708)
Q Consensus       526 ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-  602 (708)
                      +..++...|++++|+..|++..+  +.| +...+..++.+|...|++++|...++++ ...|.+...|..++..+...| 
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQ--KAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Confidence            44455555555555555555554  223 2444555555555555555555555554 122223445555554443332 


Q ss_pred             -CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          603 -NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       603 -~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                       +.+.+...++++....|.. ..+..++.++...|++++|+..++++.+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~-~a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          138 QEKKKLETDYKKLSSPTKMQ-YARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHC---CCCHHH-HHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence             2233333444433222211 1233445555555555555555555544

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.95  E-value=2.2e-08  Score=84.12  Aligned_cols=133  Identities=18%  Similarity=0.222  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLS  566 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~  566 (708)
                      .|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++.+.+ +.+...+..++..+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            46677788888888888888888888753 2355667777778888889999999888887642 224567778888899


Q ss_pred             hcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 038516          567 RAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       567 ~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      ..|++++|.+.++++. ..+.+...+..++..+...|++++|...++++++.+|++
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~  136 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRS  136 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTTC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCCC
Confidence            9999999999888872 222457788888888999999999999999999988863

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.94  E-value=1.4e-08  Score=93.06  Aligned_cols=155  Identities=10%  Similarity=0.018  Sum_probs=113.3

Q ss_pred             hhHhcCCHHHHHHHHhhCCC--C-ChHHHHH----------------HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHH
Q 038516          463 MYAKNGDLRAAESIFSQVLH--P-DLKCWNA----------------LLGGYSHYGMAEEAFMVFEVILEHGLRP-DEIT  522 (708)
Q Consensus       463 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~  522 (708)
                      .+...|++++|+..|++...  | +...|..                +..+|.+.|++++|+..|++.++.  .| +...
T Consensus        13 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~   90 (208)
T 3urz_A           13 AAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK--APNNVDC   90 (208)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHH
Confidence            34455666666666655532  2 2334444                888999999999999999999995  56 4667


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCC--HHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGL--LDEAENLIAESPYSEIRIELWRTLLSTCV  599 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  599 (708)
                      +..+..++...|++++|...|++..+  +.|+ ...+..++..|...|+  .+++...++.....+|....+...+.++.
T Consensus        91 ~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~  168 (208)
T 3urz_A           91 LEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKL  168 (208)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            88888899999999999999999998  4564 6788888888876664  44566667666433233334555566677


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCC
Q 038516          600 AKRNSRMVIQAAEQVLRLDPED  621 (708)
Q Consensus       600 ~~~~~~~a~~~~~~~~~~~p~~  621 (708)
                      ..|++++|+..+++++++.|++
T Consensus       169 ~~~~~~~A~~~~~~al~l~P~~  190 (208)
T 3urz_A          169 FTTRYEKARNSLQKVILRFPST  190 (208)
T ss_dssp             HHHTHHHHHHHHHHHTTTSCCH
T ss_pred             HccCHHHHHHHHHHHHHhCCCH
Confidence            7899999999999999999974

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.93  E-value=8.9e-09  Score=110.75  Aligned_cols=159  Identities=13%  Similarity=0.037  Sum_probs=125.6

Q ss_pred             cCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHH
Q 038516          467 NGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKIL  542 (708)
Q Consensus       467 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~  542 (708)
                      .|++++|.+.|++..   +.+...|..+...|...|++++|.+.+++..+.  .| +...+..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478899999999886   345788999999999999999999999999985  55 466788888899999999999999


Q ss_pred             HHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhc
Q 038516          543 WNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK---RNSRMVIQAAEQVLRL  617 (708)
Q Consensus       543 ~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~  617 (708)
                      +++..+.  .|+ ...+..++.+|.+.|++++|.+.++++ ...+.+...+..+...+...   |+.++|...++++++.
T Consensus        80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999873  443 678889999999999999999999997 23334678899999999999   9999999999999999


Q ss_pred             CCCCcchHHHHH
Q 038516          618 DPEDGTTHILLS  629 (708)
Q Consensus       618 ~p~~~~~~~~l~  629 (708)
                      +|++...+..++
T Consensus       158 ~p~~~~~~~~l~  169 (568)
T 2vsy_A          158 GVGAVEPFAFLS  169 (568)
T ss_dssp             TCCCSCHHHHTT
T ss_pred             CCcccChHHHhC
Confidence            999999888777

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.92  E-value=1.1e-08  Score=87.13  Aligned_cols=101  Identities=10%  Similarity=-0.021  Sum_probs=88.6

Q ss_pred             CCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516          551 LIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL  628 (708)
Q Consensus       551 ~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  628 (708)
                      +.|+ ...+..++..+.+.|++++|...++++ ...|.+...|..++.++...|++++|+..++++++++|+++..+..+
T Consensus        13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l   92 (142)
T 2xcb_A           13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHA   92 (142)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHH
Confidence            4443 455667888899999999999999887 33335788899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCchHHHHHHHHHhcC
Q 038516          629 SNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       629 ~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +.+|...|++++|.+.++++.+.
T Consensus        93 g~~~~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           93 AECHLQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999999999999988764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.89  E-value=1.2e-08  Score=84.68  Aligned_cols=115  Identities=16%  Similarity=0.081  Sum_probs=90.3

Q ss_pred             CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHH
Q 038516          516 LRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWR  592 (708)
Q Consensus       516 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~  592 (708)
                      +.|+ ...+......+.+.|++++|++.|++.++  +.| +...|..++.+|.+.|++++|+..++++ ...+.+...|.
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            4454 23456666677778888888888887776  334 3667777888888888888888888887 33335688899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516          593 TLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY  632 (708)
Q Consensus       593 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  632 (708)
                      .++.++...|++++|...++++++++|++..++..|+.++
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999888887653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.88  E-value=2.6e-08  Score=96.42  Aligned_cols=131  Identities=12%  Similarity=0.032  Sum_probs=111.4

Q ss_pred             ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHH-
Q 038516          519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLS-  596 (708)
Q Consensus       519 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~-  596 (708)
                      +...+..+...+...|++++|...|+++.+  ..|+ ...+..++..|.+.|++++|...++++....|+......... 
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~  193 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI  193 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence            345566777788999999999999999987  4454 677888999999999999999999999665576655444443 


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      .+...++.+.|...++++++.+|+++.++..|+.+|...|++++|...++++.+.
T Consensus       194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~  248 (287)
T 3qou_A          194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRX  248 (287)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            3667788888999999999999999999999999999999999999999998775

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.87  E-value=1.5e-08  Score=84.30  Aligned_cols=121  Identities=6%  Similarity=-0.088  Sum_probs=100.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      ...+..++..+.+.|++++|...++++ ...+.+...|..++.++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            455777888899999999999999887 3333568899999999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHH
Q 038516          634 ATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNM  695 (708)
Q Consensus       634 ~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~  695 (708)
                      ..|++++|...+++..+..+.                    ....|...++...+.+...++
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~--------------------~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAE--------------------VNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHH--------------------HHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHhCHHHHHHHHHHHHHhCcc--------------------cCCchhHHHHHHHHHHHHHhh
Confidence            999999999999988764211                    012377788888877766553

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.86  E-value=5.3e-08  Score=89.61  Aligned_cols=117  Identities=9%  Similarity=0.016  Sum_probs=53.7

Q ss_pred             HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516          530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI  608 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~  608 (708)
                      +...|++++|...|++..    .|+...+..++..|.+.|++++|.+.++++ ...+.+...|..++..+...|++++|.
T Consensus        16 ~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~   91 (213)
T 1hh8_A           16 AADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAI   91 (213)
T ss_dssp             HHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHH
Confidence            334444444444444332    233344444444444444444444444443 111123444444444455555555555


Q ss_pred             HHHHHHHhcCCCCc----------------chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          609 QAAEQVLRLDPEDG----------------TTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       609 ~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      ..+++++++.|++.                .++..++.+|...|++++|.+.++++.+
T Consensus        92 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           92 KDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            55555555444444                4455555555555555555555554443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.86  E-value=1.7e-08  Score=89.72  Aligned_cols=145  Identities=8%  Similarity=0.009  Sum_probs=105.1

Q ss_pred             HhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHH-HHhcCCH--H
Q 038516          530 CSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLST-CVAKRNS--R  605 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~-~~~~~~~--~  605 (708)
                      +...|++++|...+++..+.. +.+...+..++..|...|++++|...++++ ...+.+...+..++.. +...|++  +
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence            345677777777777776631 224567777888888888888888888776 2222467778888888 7788888  9


Q ss_pred             HHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHH
Q 038516          606 MVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQ  685 (708)
Q Consensus       606 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  685 (708)
                      +|...++++++.+|+++.++..++.+|...|++++|...++++.+....                       ++....+.
T Consensus        99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-----------------------~~~~~~~~  155 (177)
T 2e2e_A           99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP-----------------------RINRTQLV  155 (177)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-----------------------TSCHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC-----------------------CccHHHHH
Confidence            9999999999999999999999999999999999999999988765432                       45566666


Q ss_pred             HHHHHHHHHHHhh
Q 038516          686 AELHRLRGNMRKL  698 (708)
Q Consensus       686 ~~l~~l~~~~~~~  698 (708)
                      ..+.+.+......
T Consensus       156 ~~i~~~~~~~~~~  168 (177)
T 2e2e_A          156 ESINMAKLLQRRS  168 (177)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCC
Confidence            6666655554443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.86  E-value=7.6e-08  Score=94.24  Aligned_cols=218  Identities=11%  Similarity=-0.034  Sum_probs=153.4

Q ss_pred             CCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHH
Q 038516          397 MGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESI  476 (708)
Q Consensus       397 ~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  476 (708)
                      .|++++|.+++++..+... ..      +   +...++++.|...+...               ...|...|++++|...
T Consensus         4 ~~~~~eA~~~~~~a~k~~~-~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~   58 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLK-TS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA   58 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-CC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcc-cc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence            4677888888887665311 00      0   11146667666666543               4567788899998888


Q ss_pred             HhhCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCC---CCC--hHHHHHHHHHHhccCcHHHHHHH
Q 038516          477 FSQVLH-----PD----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGL---RPD--EITFLSLLSACSHSGLVERGKIL  542 (708)
Q Consensus       477 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~~~~~ll~~~~~~~~~~~a~~~  542 (708)
                      |.+...     .+    ..+|+.+...|...|++++|+..|++.++.-.   .|.  ..++..+...|.. |++++|+..
T Consensus        59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~  137 (307)
T 2ifu_A           59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL  137 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence            877631     12    45788888999999999999999999876311   121  2457777778888 999999999


Q ss_pred             HHHhhHC----CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCC----HHHHHHHHHHHHhcCCHHHHHH
Q 038516          543 WNQMKEH----SLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESP----YSEIR----IELWRTLLSTCVAKRNSRMVIQ  609 (708)
Q Consensus       543 ~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~~~~a~~  609 (708)
                      |++..+.    +..+ ...++..++..|.+.|++++|...++++.    .. +.    ...+..++..+...|++++|..
T Consensus       138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEM-ENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9998763    1111 14678889999999999999999998871    11 12    2355666667778899999999


Q ss_pred             HHHHHHhcCCCCcch-----HHHHHHHHHhcCCchHHHH
Q 038516          610 AAEQVLRLDPEDGTT-----HILLSNLYAATGRWDCVAK  643 (708)
Q Consensus       610 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~eA~~  643 (708)
                      .+++++ ++|+....     ...++.++ ..|+.+++.+
T Consensus       217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            999999 99986643     33455555 5677766655

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.86  E-value=2.3e-07  Score=90.20  Aligned_cols=161  Identities=7%  Similarity=-0.064  Sum_probs=122.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCC-CCChH----HHHHHHHHHhccCcHHHHHHHHHHhhHCCC-CcC----hHHHH
Q 038516          490 ALLGGYSHYGMAEEAFMVFEVILEHGL-RPDEI----TFLSLLSACSHSGLVERGKILWNQMKEHSL-IPG----HKHYS  559 (708)
Q Consensus       490 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~  559 (708)
                      ..+..+...|++++|..++++..+... .|+..    .+..+...+...+++++|+..++++.+... .++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            346778889999999999999887421 12211    223455567778899999999999987411 122    33688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHhCC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchH
Q 038516          560 CMVSLLSRAGLLDEAENLIAESP-------YSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------GTTH  625 (708)
Q Consensus       560 ~l~~~~~~~g~~~~A~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~  625 (708)
                      .++..|...|++++|...++++.       ...+ ...++..++..|...|++++|...+++++++.++.      +.+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            99999999999999999988872       2211 23467888999999999999999999999876444      5678


Q ss_pred             HHHHHHHHhcCC-chHHHHHHHHHhc
Q 038516          626 ILLSNLYAATGR-WDCVAKMRRKMKG  650 (708)
Q Consensus       626 ~~l~~~~~~~g~-~~eA~~~~~~~~~  650 (708)
                      ..+|.+|...|+ +++|.+.++++..
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            999999999995 5999999887743

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.85  E-value=3.6e-08  Score=105.97  Aligned_cols=144  Identities=15%  Similarity=0.039  Sum_probs=72.4

Q ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHH
Q 038516          433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFE  509 (708)
Q Consensus       433 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~  509 (708)
                      |++++|...++...+.. +.+...+..+...|...|++++|.+.|++..   +.+...|..+...|...|++++|.+.++
T Consensus         3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            45555666555554432 2234555556666666666666666666553   2345556666666666666666666666


Q ss_pred             HHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhc---CCHHHHHHHHHhC
Q 038516          510 VILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRA---GLLDEAENLIAES  581 (708)
Q Consensus       510 ~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~---g~~~~A~~~~~~~  581 (708)
                      +..+.  .| +...+..+..++...|++++|.+.+++..+.  .| +...+..++..+...   |++++|.+.++++
T Consensus        82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            66653  33 3445555555666666666666666666552  23 244555566666666   6666666666555

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.82  E-value=1.1e-07  Score=104.04  Aligned_cols=191  Identities=15%  Similarity=0.039  Sum_probs=146.9

Q ss_pred             hCcccHHHHHHHHHHHHH-------hCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcC
Q 038516          430 ADLAILKQGEMIHSQAEK-------TGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYG  499 (708)
Q Consensus       430 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g  499 (708)
                      ...|++++|.+.++...+       ...+.+...+..+...|...|++++|++.|++..   +.+...|..+..+|...|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g  481 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTG  481 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcC
Confidence            567778888877777661       1224456778888889999999999999999885   457789999999999999


Q ss_pred             ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHH
Q 038516          500 MAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENL  577 (708)
Q Consensus       500 ~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~  577 (708)
                      ++++|+..|+++.+.  .| +...+..+..++.+.|++++ ++.|+++.+  +.|+ ...|..++.+|.+.|++++|.+.
T Consensus       482 ~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          482 DYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWS--TNDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             CHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH--hCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999995  56 45678888889999999999 999999987  4454 67888999999999999999999


Q ss_pred             HHhCCCCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhcCCCCcchH
Q 038516          578 IAESPYSEIR-IELWRTLLSTCVAKRN-----SRMVIQAAEQVLRLDPEDGTTH  625 (708)
Q Consensus       578 ~~~~~~~~~~-~~~~~~l~~~~~~~~~-----~~~a~~~~~~~~~~~p~~~~~~  625 (708)
                      ++++....|+ ...|..+..++...++     .+...++.+.+..+.++++...
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~~~  610 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPRVL  610 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTTHH
T ss_pred             HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHHHH
Confidence            9999655455 5677777777766554     3444555555555666555543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.82  E-value=1.2e-07  Score=92.19  Aligned_cols=164  Identities=5%  Similarity=-0.086  Sum_probs=123.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh------HHHHHHHHHHhccCcHHHHHHHHHHhhHC---CCCcC--
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE------ITFLSLLSACSHSGLVERGKILWNQMKEH---SLIPG--  554 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~p~--  554 (708)
                      ..+...+..+...|++++|.+.+++..+.... +.      ..+..+...+...|++++|...+++..+.   ...+.  
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34555677888899999999999988875322 22      12333445677888999999999988754   11222  


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCC---CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAESP---YSEIR-----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE------  620 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------  620 (708)
                      ..+++.++..|...|++++|...++++.   ...++     ..++..++..|...|++++|...+++++++.++      
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            4578889999999999999999998762   11122     257888999999999999999999999987543      


Q ss_pred             CcchHHHHHHHHHhcCCchHH-HHHHHHHhc
Q 038516          621 DGTTHILLSNLYAATGRWDCV-AKMRRKMKG  650 (708)
Q Consensus       621 ~~~~~~~l~~~~~~~g~~~eA-~~~~~~~~~  650 (708)
                      .+.+|..+|.+|...|++++| ...+++...
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            155688999999999999999 777776643

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.79  E-value=1.3e-07  Score=87.73  Aligned_cols=184  Identities=11%  Similarity=-0.022  Sum_probs=131.4

Q ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCC-C-chhHHHHHHHhhHhcCCHHHHHHHHhhCC--CCCh----HHHHHH
Q 038516          420 FALSGALSACADLAILKQGEMIHSQAEKTGHG-V-EMSVCGSLVDMYAKNGDLRAAESIFSQVL--HPDL----KCWNAL  491 (708)
Q Consensus       420 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~----~~~~~l  491 (708)
                      ..+......+...|++++|...++.+.+.... + ....+..+..+|.+.|++++|+..|+++.  .|+.    ..+..+
T Consensus         5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~   84 (225)
T 2yhc_A            5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR   84 (225)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence            34455666788899999999999999876422 2 24567788999999999999999999985  2332    245555


Q ss_pred             HHHHHh------------------cCChHHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516          492 LGGYSH------------------YGMAEEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLI  552 (708)
Q Consensus       492 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  552 (708)
                      ..++..                  .|++++|+..|+++++.  .|+... .......          ..+...+.     
T Consensus        85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~-----  147 (225)
T 2yhc_A           85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA-----  147 (225)
T ss_dssp             HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH-----
T ss_pred             HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH-----
Confidence            556554                  57899999999999985  566432 2211110          00111110     


Q ss_pred             cChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          553 PGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                         .....++..|.+.|++++|...++++....|+    ...+..++.++...|+.++|...++++....|++..
T Consensus       148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence               11234678899999999999999887322232    356888899999999999999999999999998765

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.77  E-value=1.6e-06  Score=90.26  Aligned_cols=103  Identities=12%  Similarity=-0.003  Sum_probs=57.0

Q ss_pred             ccC-ChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC--CChhHHHHHHHHHHcCCC-chHHHH
Q 038516          228 RMG-NFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN--PDLVSWNSMIAGYMENGN-GEKAVD  303 (708)
Q Consensus       228 ~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~  303 (708)
                      +.| ++..|+.+|+.++..-  |.              |+.+.+..+|++...  |++..|...+.-..+.+. .+....
T Consensus         6 ~~~~~i~~aR~vyer~l~~~--P~--------------~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~   69 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRLY--MS--------------KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYE   69 (493)
T ss_dssp             ------CCHHHHHHHHHHHH--HT--------------TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHH
T ss_pred             HcCcchHHHHHHHHHHHHHC--CC--------------CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHH
Confidence            345 4777888888777652  11              788888888888765  777777777766555542 344556


Q ss_pred             HHHHHHHcCCC-CCCHhHHHHHHHHHcC----CCCccchHHHHHHHHH
Q 038516          304 MFVALRRMSLL-KPDEYTFAAIISATSA----LPASAYGKPLHALVIK  346 (708)
Q Consensus       304 ~~~~m~~~~~~-~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~  346 (708)
                      +|+.....-|. +++...|...+..+..    .++.+.+..+|+..+.
T Consensus        70 ~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~  117 (493)
T 2uy1_A           70 VYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ  117 (493)
T ss_dssp             HHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence            66665554232 2344455555444332    1334455555555554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.77  E-value=6.9e-08  Score=85.68  Aligned_cols=128  Identities=13%  Similarity=0.076  Sum_probs=102.3

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHH-HHh
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLST-CVA  600 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~-~~~  600 (708)
                      +..+...+...|++++|...|+++.+  ..|+ ...+..++..+.+.|++++|...++++....|++..+..+... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHh
Confidence            44566678899999999999999886  4454 6778899999999999999999999985443555444333222 222


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      .++...|+..++++++.+|+++..+..++.+|...|++++|...++++.+..
T Consensus        87 ~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~  138 (176)
T 2r5s_A           87 QAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVN  138 (176)
T ss_dssp             HHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC
Confidence            2333457899999999999999999999999999999999999999988754

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.75  E-value=3.9e-08  Score=86.12  Aligned_cols=97  Identities=9%  Similarity=-0.013  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      ...+..++..+.+.|++++|+..++++ ...+.+...|..+..++...|++++|+..++++++++|+++.+|..++.+|.
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            445666666777777777777777665 2222356667777777777777777777777777777777777777777777


Q ss_pred             hcCCchHHHHHHHHHhcC
Q 038516          634 ATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       634 ~~g~~~eA~~~~~~~~~~  651 (708)
                      ..|++++|...+++..+.
T Consensus        91 ~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHh
Confidence            777777777777766553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.74  E-value=8e-08  Score=81.10  Aligned_cols=99  Identities=10%  Similarity=0.079  Sum_probs=87.2

Q ss_pred             cChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038516          553 PGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNL  631 (708)
Q Consensus       553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  631 (708)
                      .+...+..++..+...|++++|...++++ ...+.+...|..++..+...|++++|...++++++++|+++.++..++.+
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            34677888888999999999999998887 23334688899999999999999999999999999999999999999999


Q ss_pred             HHhcCCchHHHHHHHHHhcC
Q 038516          632 YAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       632 ~~~~g~~~eA~~~~~~~~~~  651 (708)
                      |...|++++|...++++.+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHH
Confidence            99999999999999988764

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.74  E-value=2.6e-08  Score=95.95  Aligned_cols=191  Identities=8%  Similarity=-0.027  Sum_probs=133.7

Q ss_pred             chhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHH
Q 038516          453 EMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLS  528 (708)
Q Consensus       453 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~  528 (708)
                      +...+..+...+.+.|++++|...|++..   +.+...|..+..+|.+.|++++|+..+++..+.  .| +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            34556677778888899999999988774   347788888999999999999999999999884  55 4566777888


Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCcCh-HHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMV  607 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  607 (708)
                      ++...|++++|...|++..+.  .|+. ..+...+....+..+...... ....... .+..+...+...  ..|+.++|
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~i~~~l~~l--~~~~~~~A  154 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIH-QESELHSYLTRL--IAAERERE  154 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCC-CCCHHHHHHHHH--HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHh-hhHHHHHHHHHH--HHHHHHHH
Confidence            899999999999999988763  2321 011111222222111111111 1222222 344554444332  26899999


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHhcC
Q 038516          608 IQAAEQVLRLDPEDGTTHILLSNLYAAT-GRWDCVAKMRRKMKGS  651 (708)
Q Consensus       608 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~eA~~~~~~~~~~  651 (708)
                      .+.++++++++|++......+..++.+. +++++|.++|.++.+.
T Consensus       155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999999888888888888777 7899999999988653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.73  E-value=9.8e-07  Score=84.75  Aligned_cols=148  Identities=13%  Similarity=0.133  Sum_probs=72.8

Q ss_pred             CChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHH--HHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCC-----
Q 038516          499 GMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVE--RGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGL-----  570 (708)
Q Consensus       499 g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----  570 (708)
                      +++++++.+++++.+.  .| |...|..-...+.+.|.++  ++++.++++++.. .-+...|+.-..++.+.|.     
T Consensus       124 ~~~~~EL~~~~~~l~~--~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~  200 (306)
T 3dra_A          124 FDPYREFDILEAMLSS--DPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN  200 (306)
T ss_dssp             CCTHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred             CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence            4555555555555553  22 3444444444444444444  5555555555421 1123344444444444443     


Q ss_pred             -HHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHH
Q 038516          571 -LDEAENLIAES-PYSEIRIELWRTLLSTCVAKRN-SRMVIQAAEQVLRLD---PEDGTTHILLSNLYAATGRWDCVAKM  644 (708)
Q Consensus       571 -~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~eA~~~  644 (708)
                       +++++++++++ ...+.+...|..+...+...|+ .+.....++++++++   |.++.++..++.+|.+.|+.++|.++
T Consensus       201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence             55555555544 2222345555555555555444 222344555554444   55555555666666666666666666


Q ss_pred             HHHHh
Q 038516          645 RRKMK  649 (708)
Q Consensus       645 ~~~~~  649 (708)
                      ++.+.
T Consensus       281 ~~~l~  285 (306)
T 3dra_A          281 YDLLK  285 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            65554

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.73  E-value=6.7e-08  Score=84.43  Aligned_cols=117  Identities=10%  Similarity=0.039  Sum_probs=89.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCC-------------------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAESPY-------------------SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD  618 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  618 (708)
                      +...+..+.+.|++++|...|+++..                   .+....+|..+..++...|++++|+..++++++++
T Consensus        14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~   93 (162)
T 3rkv_A           14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE   93 (162)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence            44445555555555555555544410                   11234678888899999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchH-HHHHHHHHHHHHHHh
Q 038516          619 PEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKID-DAQAELHRLRGNMRK  697 (708)
Q Consensus       619 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~l~~~~~~  697 (708)
                      |+++.+|..+|.+|...|++++|...+++..+.                          .|... .+...+..+..++++
T Consensus        94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--------------------------~p~~~~~~~~~l~~~~~~~~~  147 (162)
T 3rkv_A           94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--------------------------HPAAASVVAREMKIVTERRAE  147 (162)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------CGGGHHHHHHHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--------------------------CCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999988764                          46665 677788888877776


Q ss_pred             hhh
Q 038516          698 LVT  700 (708)
Q Consensus       698 ~~~  700 (708)
                      ..+
T Consensus       148 ~~~  150 (162)
T 3rkv_A          148 KKA  150 (162)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            633

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.70  E-value=7.7e-08  Score=95.33  Aligned_cols=160  Identities=12%  Similarity=0.020  Sum_probs=115.9

Q ss_pred             CCHHHHHHHHhhCC--CC-ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 038516          468 GDLRAAESIFSQVL--HP-DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWN  544 (708)
Q Consensus       468 g~~~~A~~~~~~~~--~~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  544 (708)
                      +++++|...|+...  .| +...|..+...|.+.|++++|+..|++.++.  .|+...+         .  .+.+.+.- 
T Consensus       127 ~~~~~A~~~~~~a~~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~---------~--~~~~~~~~-  192 (336)
T 1p5q_A          127 KSFEKAKESWEMNSEEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------S--NEEAQKAQ-  192 (336)
T ss_dssp             EEEECCCCGGGCCHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------C--SHHHHHHH-
T ss_pred             eecccccchhcCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccC---------C--hHHHHHHH-
Confidence            44455555554443  12 4556777778888888888888888888774  3432110         0  01111100 


Q ss_pred             HhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          545 QMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      .       -....|..++.+|.+.|++++|+..++++ ...+.+...|..++.++...|++++|+..++++++++|++..
T Consensus       193 ~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~  265 (336)
T 1p5q_A          193 A-------LRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA  265 (336)
T ss_dssp             H-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH
T ss_pred             H-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH
Confidence            0       01456778889999999999999999887 333357888999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCCchHHH-HHHHHH
Q 038516          624 THILLSNLYAATGRWDCVA-KMRRKM  648 (708)
Q Consensus       624 ~~~~l~~~~~~~g~~~eA~-~~~~~~  648 (708)
                      ++..++.++...|++++|. ..+++|
T Consensus       266 a~~~l~~~~~~~~~~~~a~~~~~~~~  291 (336)
T 1p5q_A          266 AKTQLAVCQQRIRRQLAREKKLYANM  291 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999994 455555

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.70  E-value=6e-07  Score=82.27  Aligned_cols=175  Identities=12%  Similarity=-0.057  Sum_probs=131.1

Q ss_pred             HHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC-CCChHHHHHHHHHHHhcC----ChHHHHHHHHHHH
Q 038516          438 GEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL-HPDLKCWNALLGGYSHYG----MAEEAFMVFEVIL  512 (708)
Q Consensus       438 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g----~~~~A~~~~~~m~  512 (708)
                      |...+....+.|   ++..+..|...|...+++++|...|++.. ..+...+..|...|.. +    ++++|+.+|++..
T Consensus         5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~   80 (212)
T 3rjv_A            5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV   80 (212)
T ss_dssp             TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence            334444444433   45566677777777888888888888775 3467777778888777 6    8999999999998


Q ss_pred             HCCCCCChHHHHHHHHHHhc----cCcHHHHHHHHHHhhHCCCC-cChHHHHHHHHHHHh----cCCHHHHHHHHHhCCC
Q 038516          513 EHGLRPDEITFLSLLSACSH----SGLVERGKILWNQMKEHSLI-PGHKHYSCMVSLLSR----AGLLDEAENLIAESPY  583 (708)
Q Consensus       513 ~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~  583 (708)
                      +.|   +...+..|...|..    .+++++|.++|++..+.|.. .....+..|...|..    .+++++|..+++++..
T Consensus        81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~  157 (212)
T 3rjv_A           81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSS  157 (212)
T ss_dssp             HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH
T ss_pred             HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence            865   56677777777776    88999999999999875532 126677888888988    8899999999999843


Q ss_pred             CCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHhcCC
Q 038516          584 SEIRIELWRTLLSTCVAK-R-----NSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       584 ~~~~~~~~~~l~~~~~~~-~-----~~~~a~~~~~~~~~~~p  619 (708)
                      .+.++..+..|...|... |     |.++|...++++.+..+
T Consensus       158 ~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          158 LSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             TSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             cCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            334566777777777652 3     89999999999988754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.70  E-value=5.3e-08  Score=80.00  Aligned_cols=96  Identities=20%  Similarity=0.088  Sum_probs=84.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  635 (708)
                      .+..++..+.+.|++++|...++++ ...|.+...|..++.++...|++++|+..++++++++|+++.++..++.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            3556778899999999999999988 333357889999999999999999999999999999999999999999999999


Q ss_pred             CCchHHHHHHHHHhcCC
Q 038516          636 GRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       636 g~~~eA~~~~~~~~~~~  652 (708)
                      |++++|+..++++.+..
T Consensus        99 g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999887653

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.69  E-value=1.8e-07  Score=81.86  Aligned_cols=126  Identities=11%  Similarity=0.067  Sum_probs=91.8

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~  600 (708)
                      +..+...+...|++++|...|++..+.  .| +...+..++..+...|++++|...++++ ...+.+...|..++..+..
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            444444555666666666666666552  22 3556666777777777788877777766 2222467788888889999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHHHHhc
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNL--YAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~~~~~~~~  650 (708)
                      .|++++|...+++++++.|++...+..++.+  +...|++++|...+.+...
T Consensus        94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            9999999999999999999998888555444  8889999999998886643

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.68  E-value=6.7e-06  Score=85.61  Aligned_cols=371  Identities=8%  Similarity=-0.052  Sum_probs=211.8

Q ss_pred             cCC-ChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCC-hHHH
Q 038516          193 KND-KMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSD-TQTA  270 (708)
Q Consensus       193 ~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a  270 (708)
                      +.| +++.|..+|+.+...  -|.              ++.+.+..+|+..+..  .|++..|...+....+.++ .+..
T Consensus         6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i   67 (493)
T 2uy1_A            6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL   67 (493)
T ss_dssp             ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred             HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence            456 488888888888763  233              8999999999999885  4689999888887766653 3455


Q ss_pred             HHHHhccCC------CChhHHHHHHHHHHc----CCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHH
Q 038516          271 FSVFTRIEN------PDLVSWNSMIAGYME----NGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPL  340 (708)
Q Consensus       271 ~~~~~~~~~------~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~  340 (708)
                      ..+|+....      .+...|...+.-+..    +++.+.+..+|++.... ....-...|..... +....+...+..+
T Consensus        68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~-fE~~~~~~~~~~~  145 (493)
T 2uy1_A           68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFEN-FELELNKITGKKI  145 (493)
T ss_dssp             HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHH-HHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHH-HHHHhccccHHHH
Confidence            666665432      466778877776542    45678899999999864 11111122221111 1111111112222


Q ss_pred             HHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC----CCEeeehhhHHHHhcCC-------ChHHHHHHHHH
Q 038516          341 HALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE----KDIVLWTEMIIGHSRMG-------DGECAIKLFCK  409 (708)
Q Consensus       341 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~-------~~~~A~~~~~~  409 (708)
                      .....                     +.+..|..+++.+..    .+...|...+.--...+       ..+.+..+|++
T Consensus       146 ~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~  204 (493)
T 2uy1_A          146 VGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNY  204 (493)
T ss_dssp             HHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHH
Confidence            11110                     111222222221111    11223333333211110       02346677887


Q ss_pred             HhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC--------
Q 038516          410 MCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL--------  481 (708)
Q Consensus       410 m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------  481 (708)
                      ++... +-+...|...+.-+...|+.+.|..+++.....  +.+...+...... ...++.  ...+.+...        
T Consensus       205 al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~y~~~-~e~~~~--~~~l~~~~~~~~~~~~~  278 (493)
T 2uy1_A          205 ILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLYYGLV-MDEEAV--YGDLKRKYSMGEAESAE  278 (493)
T ss_dssp             HHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHH-TTCTHH--HHHHHHHTC--------
T ss_pred             HHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHHHHhh-cchhHH--HHHHHHHHHhhccchhh
Confidence            77643 334556666666677788889999999888877  3343333222211 111111  111221110        


Q ss_pred             ----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHH-hccCcHHHHHHHHHHhhHCCCCcChH
Q 038516          482 ----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSAC-SHSGLVERGKILWNQMKEHSLIPGHK  556 (708)
Q Consensus       482 ----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~~~p~~~  556 (708)
                          ......|...+....+.++.+.|..+|+++ .. ...+...|......- ...++.+.|..+|+...+.- .-+..
T Consensus       279 ~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~  355 (493)
T 2uy1_A          279 KVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTL  355 (493)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHH
T ss_pred             hhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHH
Confidence                011245777777777788899999999998 32 122333343222211 12336899999999988741 11234


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR  616 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  616 (708)
                      .+...++.....|+.+.|..+++++.   ....+|...+..-...|+.+.+..++++...
T Consensus       356 ~~~~yid~e~~~~~~~~aR~l~er~~---k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          356 LKEEFFLFLLRIGDEENARALFKRLE---KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHSC---CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            55667787888999999999999984   3578888888888889999999998888875

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.68  E-value=3e-07  Score=86.11  Aligned_cols=181  Identities=4%  Similarity=-0.091  Sum_probs=124.5

Q ss_pred             hcCCHHHHHHHHhhCC---CCChHHHHHH-------HHHHHhcCChHHHHHHHHHHHHCCCCCChH--------------
Q 038516          466 KNGDLRAAESIFSQVL---HPDLKCWNAL-------LGGYSHYGMAEEAFMVFEVILEHGLRPDEI--------------  521 (708)
Q Consensus       466 ~~g~~~~A~~~~~~~~---~~~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------------  521 (708)
                      ..++...|.+.|.++.   +.....|+.+       ..++...++..+++..+++..+  +.|+..              
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            4677888888887774   3345677777       4556665666666665555554  233221              


Q ss_pred             --------HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC----HH
Q 038516          522 --------TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR----IE  589 (708)
Q Consensus       522 --------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~  589 (708)
                              ....+...+...|++++|.+.|+.+...  .|+......+...+.+.|++++|+..++..... ++    ..
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-PDKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-SCHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-CCcccHHH
Confidence                    1223455677888888888888887763  354335556677888888888888888766443 22    23


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLD--PE-DGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++..+..++...|+.++|+..++++..-.  |. .+.....++.++.++|+.++|...|+++...
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            67777778888888888888888887533  44 4446778888888888888888888888764

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.68  E-value=2.7e-07  Score=77.18  Aligned_cols=96  Identities=9%  Similarity=0.016  Sum_probs=53.3

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      ...+..++..+.+.|++++|...++++ ...+.+...+..++..+...|++++|...++++++..|+++.++..++.+|.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~   95 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            344555555555555555555555554 2222245555555555555556666666666666666655555556666666


Q ss_pred             hcCCchHHHHHHHHHhc
Q 038516          634 ATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       634 ~~g~~~eA~~~~~~~~~  650 (708)
                      ..|++++|.+.+++..+
T Consensus        96 ~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           96 AMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            66666666655555543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.67  E-value=8e-08  Score=94.06  Aligned_cols=197  Identities=11%  Similarity=-0.016  Sum_probs=151.3

Q ss_pred             CcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHH
Q 038516          431 DLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEV  510 (708)
Q Consensus       431 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  510 (708)
                      ..|++++|.++++...+..-. .         .+...+++++|...|..           ....|...|++++|...|.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHH
Confidence            467888999998887764221 1         12225889999888765           36678899999999999999


Q ss_pred             HHHCCCCC-C----hHHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHh
Q 038516          511 ILEHGLRP-D----EITFLSLLSACSHSGLVERGKILWNQMKEH----SLIP-GHKHYSCMVSLLSRAGLLDEAENLIAE  580 (708)
Q Consensus       511 m~~~g~~p-~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~  580 (708)
                      ..+..... +    ..+|..+...|...|++++|+..|++..+.    |-.+ ...++..++..|.. |++++|+..+++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            87631111 1    346778888999999999999999988653    2111 24678889999988 999999999988


Q ss_pred             C----CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc------hHHHHHHHHHhcCCchHHHHHHHH
Q 038516          581 S----PYSE-I--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT------THILLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       581 ~----~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~------~~~~l~~~~~~~g~~~eA~~~~~~  647 (708)
                      +    +... +  ...++..+...+...|++++|...+++++++.|++..      .+..++.++...|++++|...+++
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7    1110 1  1457888899999999999999999999998776542      577888899999999999999998


Q ss_pred             Hh
Q 038516          648 MK  649 (708)
Q Consensus       648 ~~  649 (708)
                      ..
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            87

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.67  E-value=8.5e-06  Score=78.20  Aligned_cols=225  Identities=8%  Similarity=-0.002  Sum_probs=162.6

Q ss_pred             hHHHHHHHHHHhHCCCccCHH-HHHHHHHHHhCcc--cHHHHHHHHHHHHHhCCCCchhHHHHHHHhh----Hhc---CC
Q 038516          400 GECAIKLFCKMCREGLKCDNF-ALSGALSACADLA--ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMY----AKN---GD  469 (708)
Q Consensus       400 ~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~  469 (708)
                      .++|+..++.++..  .|+.. .++.--..+...+  .++++..+++.+...+. -+..+++.-...+    ...   ++
T Consensus        49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           49 SERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHhccccCC
Confidence            35677777666654  34433 3444444444555  77777777777766542 2333333322222    333   78


Q ss_pred             HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChH--HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc------HHH
Q 038516          470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAE--EAFMVFEVILEHGLRPDEITFLSLLSACSHSGL------VER  538 (708)
Q Consensus       470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~------~~~  538 (708)
                      +++++.+++.+.   +.|..+|+.-.-.+.+.|+++  ++++.++++++... -|...|+.-...+.+.+.      +++
T Consensus       126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~e  204 (306)
T 3dra_A          126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDE  204 (306)
T ss_dssp             THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHH
Confidence            899999999885   467888988888888889888  99999999999642 266777776666666666      899


Q ss_pred             HHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHH-HHHHHHhCCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038516          539 GKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDE-AENLIAESPY----SEIRIELWRTLLSTCVAKRNSRMVIQAAE  612 (708)
Q Consensus       539 a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~  612 (708)
                      +++.++.++.  ..| +...|+.+..++.+.|+..+ +..+..++..    .+.++..+..++..+.+.|+.++|.++++
T Consensus       205 El~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          205 ELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            9999999987  445 47788888889999887544 6667777622    23578899999999999999999999999


Q ss_pred             HHHh-cCCCCcchHHHHHH
Q 038516          613 QVLR-LDPEDGTTHILLSN  630 (708)
Q Consensus       613 ~~~~-~~p~~~~~~~~l~~  630 (708)
                      .+.+ .+|-....|...+.
T Consensus       283 ~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          283 LLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHTTCGGGHHHHHHHHH
T ss_pred             HHHhccChHHHHHHHHHHh
Confidence            9997 79999888877664

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.67  E-value=2.5e-07  Score=75.36  Aligned_cols=97  Identities=10%  Similarity=0.047  Sum_probs=75.0

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      ...+..++..+...|++++|...++++ ...+.+...+..++..+...|++++|...++++++..|+++..+..++.+|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            345666777777888888888887776 2222467777778888888888888888888888888888888888888888


Q ss_pred             hcCCchHHHHHHHHHhcC
Q 038516          634 ATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       634 ~~g~~~eA~~~~~~~~~~  651 (708)
                      ..|++++|.+.+++..+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~  101 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKH  101 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTT
T ss_pred             HHhhHHHHHHHHHHHHHc
Confidence            888888888888877654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.67  E-value=3.3e-06  Score=81.88  Aligned_cols=158  Identities=12%  Similarity=0.017  Sum_probs=120.7

Q ss_pred             HHHhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CC----hHHHHH
Q 038516          460 LVDMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLR-PD----EITFLS  525 (708)
Q Consensus       460 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~~~~~~  525 (708)
                      .+..+...|++++|...+++...     ++    ...+..+...+...|++++|+..++++.+.... ++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            46678889999999999988642     12    113334666777788999999999999984322 22    225888


Q ss_pred             HHHHHhccCcHHHHHHHHHHhhHC-----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHHHHH
Q 038516          526 LLSACSHSGLVERGKILWNQMKEH-----SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIELWR  592 (708)
Q Consensus       526 ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~  592 (708)
                      +...|...|++++|..+|+++.+.     +..+. ..++..++..|.+.|++++|...++++       .....-..++.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            888999999999999999999852     22222 347888999999999999999998876       11112267888


Q ss_pred             HHHHHHHhcC-CHHHHHHHHHHHHhc
Q 038516          593 TLLSTCVAKR-NSRMVIQAAEQVLRL  617 (708)
Q Consensus       593 ~l~~~~~~~~-~~~~a~~~~~~~~~~  617 (708)
                      .++.++...| +.++|...+++++.+
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            8999999999 579999999998864

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.67  E-value=2.1e-07  Score=77.55  Aligned_cols=117  Identities=9%  Similarity=-0.024  Sum_probs=86.2

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516          522 TFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~  600 (708)
                      .+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|...++++ ...+.+...+..++..+..
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence            34445555666666666666666665521 123555666777777777888887777776 2232457788888888999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD  639 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  639 (708)
                      .|++++|...+++++++.|+++..+..++.++...|+++
T Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999888763

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.67  E-value=8.3e-07  Score=81.46  Aligned_cols=147  Identities=12%  Similarity=0.052  Sum_probs=93.9

Q ss_pred             HHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcH
Q 038516          457 CGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLV  536 (708)
Q Consensus       457 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  536 (708)
                      +..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence            34556666777777777777777776777777777777777777777777777777642 22345566666666666777


Q ss_pred             HHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038516          537 ERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLR  616 (708)
Q Consensus       537 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  616 (708)
                      ++|.+.|++..+.  .|+.....     +...|.           ...+.....+..++.++...|++++|...++++++
T Consensus        88 ~~A~~~~~~al~~--~~~~~~~~-----~~~~~~-----------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           88 DLAIKDLKEALIQ--LRGNQLID-----YKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HHHHHHHHHHHHT--TTTCSEEE-----CGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh--CCCccHHH-----HHHhcc-----------ccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            7777666666653  11100000     000000           11112346777888888888999999999999999


Q ss_pred             cCCCCc
Q 038516          617 LDPEDG  622 (708)
Q Consensus       617 ~~p~~~  622 (708)
                      +.|++.
T Consensus       150 ~~p~~~  155 (213)
T 1hh8_A          150 MKSEPR  155 (213)
T ss_dssp             TCCSGG
T ss_pred             cCcccc
Confidence            988763

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.66  E-value=2e-08  Score=84.64  Aligned_cols=94  Identities=14%  Similarity=0.028  Sum_probs=75.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC----CCCC----CC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-------
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAES----PYSE----IR-----IELWRTLLSTCVAKRNSRMVIQAAEQVLRL-------  617 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~----~~~~----~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------  617 (708)
                      +...+..+...|++++|+..|+++    |..+    .+     ...|..+..++...|++++|+..+++++++       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            444556666667777777766665    2210    02     338999999999999999999999999999       


Q ss_pred             CCCCcchH----HHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          618 DPEDGTTH----ILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       618 ~p~~~~~~----~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +|+++..|    ..+|.++...|++++|+..+++..+.
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99999999    99999999999999999999988663

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.65  E-value=2.2e-07  Score=77.73  Aligned_cols=113  Identities=12%  Similarity=0.038  Sum_probs=78.1

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~  600 (708)
                      +..+...+...|++++|...|++..+.  .| +...+..++..+...|++++|.+.++++ ...+.+...+..++..+..
T Consensus        19 ~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           19 VKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            444444455555555555555555442  22 3445555666666666666666666665 2222457788888888999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR  637 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  637 (708)
                      .|++++|...++++++++|++...+..++.++...|+
T Consensus        97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999988774

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.64  E-value=3.7e-07  Score=75.21  Aligned_cols=115  Identities=17%  Similarity=0.189  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH
Q 038516          521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCV  599 (708)
Q Consensus       521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~  599 (708)
                      ..+..+...+...|++++|.++++++.+.. +.+...+..++..+.+.|++++|..+++++ ...+.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            344455555556666666666666655421 123455666677777777777777777665 222245777888888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcC
Q 038516          600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATG  636 (708)
Q Consensus       600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  636 (708)
                      ..|++++|...++++++.+|+++..+..++.++...|
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            8999999999999999999999988888888877654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.64  E-value=1.1e-07  Score=78.77  Aligned_cols=96  Identities=6%  Similarity=0.033  Sum_probs=82.4

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc-------hHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT-------THI  626 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~  626 (708)
                      ...+..++..+.+.|++++|++.|+++ ...|.+...|..++.+|...|++++|+..++++++++|++..       +|.
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            345677889999999999999999887 334356888999999999999999999999999999988764       577


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhc
Q 038516          627 LLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       627 ~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      .+|.+|...|++++|++.+++..+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            888999999999999999998765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.62  E-value=2.9e-07  Score=78.57  Aligned_cols=105  Identities=9%  Similarity=0.006  Sum_probs=86.3

Q ss_pred             CCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHH
Q 038516          516 LRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWR  592 (708)
Q Consensus       516 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~  592 (708)
                      +.|+ ...+..+...+.+.|++++|...|+++.+  +.|+ ...|..++.+|...|++++|...|+++ ...|.++..|.
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~  108 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVF  108 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHH
Confidence            3554 34566677788889999999999999887  4454 777888999999999999999999888 33334678899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516          593 TLLSTCVAKRNSRMVIQAAEQVLRLDPEDG  622 (708)
Q Consensus       593 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  622 (708)
                      .++.++...|++++|+..+++++++.|+++
T Consensus       109 ~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            999999999999999999999999999864

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.60  E-value=4.2e-07  Score=82.63  Aligned_cols=128  Identities=9%  Similarity=-0.022  Sum_probs=66.3

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHC----CCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCC----HH
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEH----SLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES----PYSEIR----IE  589 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~----~~  589 (708)
                      +..+...+...|++++|...+++..+.    +..| ....+..++..+...|++++|.+.++++    ...+.+    ..
T Consensus        29 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  108 (203)
T 3gw4_A           29 RFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASA  108 (203)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHH
Confidence            333444444444444444444444331    1111 1334455555566666666665555544    101001    23


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC--c----chHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED--G----TTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~----~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      .+..+...+...|++++|...+++++++.+..  +    ..+..++.+|...|++++|.+.+++..+
T Consensus       109 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          109 NAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            35555666666677777777777666543221  1    1245677777777777777777766543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.60  E-value=2.3e-07  Score=74.80  Aligned_cols=99  Identities=10%  Similarity=0.030  Sum_probs=84.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC--CcchHHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE--DGTTHILLSNL  631 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~  631 (708)
                      ...+..++..+...|++++|...++++ ...+.+...|..++..+...|++++|...++++++..|+  +...+..++.+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            455667788888888999998888876 223246788888999999999999999999999999999  99999999999


Q ss_pred             HHhc-CCchHHHHHHHHHhcCCC
Q 038516          632 YAAT-GRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       632 ~~~~-g~~~eA~~~~~~~~~~~~  653 (708)
                      |... |++++|.+.+++......
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhccc
Confidence            9999 999999999998876543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.59  E-value=3.8e-07  Score=75.86  Aligned_cols=98  Identities=7%  Similarity=0.001  Sum_probs=87.9

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516          554 GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY  632 (708)
Q Consensus       554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  632 (708)
                      +...+..++..+...|++++|...++++ ...+.+...+..++..+...|++++|...++++++..|+++..+..++.+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            3566778889999999999999999987 233346888999999999999999999999999999999999999999999


Q ss_pred             HhcCCchHHHHHHHHHhcC
Q 038516          633 AATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       633 ~~~g~~~eA~~~~~~~~~~  651 (708)
                      ...|++++|...+++..+.
T Consensus        91 ~~~~~~~~A~~~~~~~~~~  109 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALEL  109 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHhc
Confidence            9999999999999988764

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.58  E-value=7e-07  Score=76.27  Aligned_cols=96  Identities=13%  Similarity=-0.003  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSN  630 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  630 (708)
                      ...+..++..+...|++++|...++++....|+    ...|..+...+...|++++|...++++++++|+++..+..++.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            455666667777777777777777766333344    4566667777777777777777777777777777777777777


Q ss_pred             HHHhcCCchHHHHHHHHHhc
Q 038516          631 LYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       631 ~~~~~g~~~eA~~~~~~~~~  650 (708)
                      +|...|++++|...+++..+
T Consensus       108 ~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            77777777777777776655

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.57  E-value=9e-08  Score=81.91  Aligned_cols=115  Identities=10%  Similarity=-0.030  Sum_probs=85.1

Q ss_pred             HHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCC
Q 038516          508 FEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYS  584 (708)
Q Consensus       508 ~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  584 (708)
                      |+++..  +.|+ ...+..+...+...|++++|...|+++..  ..| +...|..++.+|...|++++|...++++ ...
T Consensus        10 ~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~   85 (148)
T 2vgx_A           10 IAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD   85 (148)
T ss_dssp             HHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            444443  3443 33455566677778888888888887776  334 4666777888888888888888888887 223


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516          585 EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       585 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  626 (708)
                      |.++..+..++.++...|++++|+..+++++++.|+++....
T Consensus        86 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  127 (148)
T 2vgx_A           86 IXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE  127 (148)
T ss_dssp             TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence            246778888889999999999999999999999999887543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.56  E-value=6.8e-07  Score=73.57  Aligned_cols=97  Identities=19%  Similarity=0.231  Sum_probs=87.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      ...+..++..+...|++++|.+.++++. ..+.+...+..++..+...|++++|...++++++..|+++..+..++.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            4677888999999999999999998872 232467889999999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHhcC
Q 038516          634 ATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       634 ~~g~~~eA~~~~~~~~~~  651 (708)
                      ..|++++|...++++.+.
T Consensus        89 ~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHh
Confidence            999999999999988764

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.56  E-value=2.4e-07  Score=77.14  Aligned_cols=93  Identities=12%  Similarity=0.010  Sum_probs=74.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhCCCCCC-CH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC---cchHHHHHHH
Q 038516          559 SCMVSLLSRAGLLDEAENLIAESPYSEI-RI---ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED---GTTHILLSNL  631 (708)
Q Consensus       559 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~  631 (708)
                      ..++..+...|++++|...++++....| +.   ..+..++.++...|++++|...++++++..|++   +.++..++.+
T Consensus         6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            6 YNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            3466778888888888888877622112 22   577778888888999999999999999999998   6778899999


Q ss_pred             HHhcCCchHHHHHHHHHhcC
Q 038516          632 YAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       632 ~~~~g~~~eA~~~~~~~~~~  651 (708)
                      |...|++++|...++++.+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999888764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.53  E-value=1.4e-06  Score=81.46  Aligned_cols=138  Identities=11%  Similarity=-0.059  Sum_probs=104.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC--hHHHHHHHHHH
Q 038516          488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG--HKHYSCMVSLL  565 (708)
Q Consensus       488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~  565 (708)
                      +-.+...+...|++++|.++|+.+...  .|+......+...+.+.+++++|+..|+...... .|.  ...+..+..++
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence            445667788888999999888888764  4655454455557888999999999998665421 121  34677789999


Q ss_pred             HhcCCHHHHHHHHHhCCCCC--C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516          566 SRAGLLDEAENLIAESPYSE--I--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLS  629 (708)
Q Consensus       566 ~~~g~~~~A~~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  629 (708)
                      .+.|++++|+..+++....+  |  ....+.....++.+.|+.++|...+++++..+|+ +.++..|.
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~  248 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALK  248 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHh
Confidence            99999999999999883221  3  3457778888899999999999999999999998 76665554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.51  E-value=1.1e-06  Score=79.57  Aligned_cols=121  Identities=3%  Similarity=-0.117  Sum_probs=61.1

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcC--------------hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCC
Q 038516          522 TFLSLLSACSHSGLVERGKILWNQMKEH-SLIPG--------------HKHYSCMVSLLSRAGLLDEAENLIAES-PYSE  585 (708)
Q Consensus       522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~  585 (708)
                      .+..+...+...|++++|...|++..+. .-.|+              ...+..++.+|...|++++|...++++ ...+
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  119 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK  119 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            3444555566666666666666666553 11110              134445555555555555555555544 1121


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038516          586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVA  642 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~  642 (708)
                      .+...+..++.++...|++++|...++++++++|++..++..++.++...|+.+++.
T Consensus       120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~  176 (198)
T 2fbn_A          120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD  176 (198)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred             ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            234455555555555555555555555555555555555555555555555444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.51  E-value=6.9e-07  Score=81.21  Aligned_cols=152  Identities=13%  Similarity=0.006  Sum_probs=103.1

Q ss_pred             hcCCHHHHHH---HHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCC-ChHHHHHHHHHHhccCcHH
Q 038516          466 KNGDLRAAES---IFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEH----GLRP-DEITFLSLLSACSHSGLVE  537 (708)
Q Consensus       466 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~  537 (708)
                      ..|++++|.+   .+..-......++..+...+...|++++|...+++..+.    +..| ....+..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            4577777777   554433345567777778888888888888888877762    1122 2344666667788888888


Q ss_pred             HHHHHHHHhhHC----CCCc--ChHHHHHHHHHHHhcCCHHHHHHHHHhCC----CCCCC----HHHHHHHHHHHHhcCC
Q 038516          538 RGKILWNQMKEH----SLIP--GHKHYSCMVSLLSRAGLLDEAENLIAESP----YSEIR----IELWRTLLSTCVAKRN  603 (708)
Q Consensus       538 ~a~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~----~~~~~~l~~~~~~~~~  603 (708)
                      +|...+++..+.    +..|  ....+..++..+...|++++|...+++..    .. .+    ...+..+...+...|+
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQA-DDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHCcC
Confidence            888888887654    2122  24457778888888999999888887761    11 12    2335677778888999


Q ss_pred             HHHHHHHHHHHHhcC
Q 038516          604 SRMVIQAAEQVLRLD  618 (708)
Q Consensus       604 ~~~a~~~~~~~~~~~  618 (708)
                      +++|...+++++++.
T Consensus       163 ~~~A~~~~~~al~~~  177 (203)
T 3gw4_A          163 LLEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999888764

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.51  E-value=7.1e-07  Score=79.13  Aligned_cols=128  Identities=10%  Similarity=0.078  Sum_probs=95.7

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHH-HHhcCCH--
Q 038516          496 SHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSL-LSRAGLL--  571 (708)
Q Consensus       496 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~--  571 (708)
                      ...|++++|+..+++..+.. +.+...+..+...+...|++++|...|+++.+.  .| +...+..++.+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence            34577788888888877752 224566777777888888888888888888763  33 45667777788 7788888  


Q ss_pred             HHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516          572 DEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       572 ~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  626 (708)
                      ++|...++++ ...+.+...+..++..+...|++++|...++++++++|+++....
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  153 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRTQ  153 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHHH
Confidence            9999998887 223245788888999999999999999999999999999876443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.49  E-value=6e-07  Score=93.41  Aligned_cols=115  Identities=10%  Similarity=-0.012  Sum_probs=67.4

Q ss_pred             HHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcH
Q 038516          461 VDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLV  536 (708)
Q Consensus       461 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~  536 (708)
                      ...+.+.|++++|.+.|++..   +.+...|..+..+|.+.|++++|+..+++..+.  .| +...+..+..++...|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence            345566677777777776653   234666667777777777777777777777764  34 345566666666677777


Q ss_pred             HHHHHHHHHhhHCCCCcC-hHHHHHHHHH--HHhcCCHHHHHHHHH
Q 038516          537 ERGKILWNQMKEHSLIPG-HKHYSCMVSL--LSRAGLLDEAENLIA  579 (708)
Q Consensus       537 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~--~~~~g~~~~A~~~~~  579 (708)
                      ++|.+.|++..+.  .|+ ...+..+..+  +.+.|++++|.+.++
T Consensus        91 ~eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7777777766653  232 2334444444  566666666666666

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.48  E-value=8e-07  Score=73.91  Aligned_cols=97  Identities=8%  Similarity=0.043  Sum_probs=82.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED-------GTTHI  626 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~  626 (708)
                      ...+..++..+...|++++|...++++ ...+.+...+..++..+...|++++|...++++++..|++       +.++.
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            345677888888999999999998887 2233467888888999999999999999999999998877       77899


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          627 LLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       627 ~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      .++.+|...|++++|.+.++++.+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHh
Confidence            9999999999999999999988763

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.48  E-value=8.4e-07  Score=80.34  Aligned_cols=149  Identities=10%  Similarity=-0.038  Sum_probs=100.2

Q ss_pred             HhhHhcCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-h----------------H
Q 038516          462 DMYAKNGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-E----------------I  521 (708)
Q Consensus       462 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----------------~  521 (708)
                      ......|+++++.+.++....   .....+..+...+...|++++|+..|++..+.  .|+ .                .
T Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~   89 (198)
T 2fbn_A           12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEEWDDQILLDKKKNIEIS   89 (198)
T ss_dssp             ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTTCCCHHHHHHHHHHHHH
T ss_pred             hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HhcccccchhhHHHHHHHHHHH
Confidence            344455677777777664432   24556778888899999999999999999984  332 2                5


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH
Q 038516          522 TFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCV  599 (708)
Q Consensus       522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~  599 (708)
                      .+..+..++...|++++|+..+++..+.  .| +...+..++.+|...|++++|.+.++++ ...+.+..++..+...+.
T Consensus        90 ~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  167 (198)
T 2fbn_A           90 CNLNLATCYNKNKDYPKAIDHASKVLKI--DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN  167 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            6777788889999999999999999873  44 4677888999999999999999999887 233246777777777777


Q ss_pred             hcCCHHHHH-HHHHHH
Q 038516          600 AKRNSRMVI-QAAEQV  614 (708)
Q Consensus       600 ~~~~~~~a~-~~~~~~  614 (708)
                      ..++.+++. ..+.++
T Consensus       168 ~~~~~~~~~~~~~~~~  183 (198)
T 2fbn_A          168 KLKEARKKDKLTFGGM  183 (198)
T ss_dssp             HHHHHHC---------
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            666665555 333433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.48  E-value=5.9e-07  Score=88.89  Aligned_cols=97  Identities=9%  Similarity=-0.035  Sum_probs=80.8

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-C---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAESPYSEI-R---------------IELWRTLLSTCVAKRNSRMVIQAAEQVLRLD  618 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  618 (708)
                      ...+..++..|.+.|++++|...|+++....| +               ...|..+..++...|++++|+..++++++++
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            44566667777777777777777776611112 2               5789999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          619 PEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       619 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      |+++.+|..++.+|...|++++|+..++++.+.
T Consensus       227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  259 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  259 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998764

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.48  E-value=2.1e-06  Score=74.88  Aligned_cols=107  Identities=13%  Similarity=0.045  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHH
Q 038516          521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTC  598 (708)
Q Consensus       521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~  598 (708)
                      ..+..+...+...|++++|+..|++.++  +.| +...|..++.+|.+.|++++|+..++++ ...+.+...|..+..++
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~   89 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALS--IAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3455555566666677777776666665  233 3566777778888888888888888776 22324688899999999


Q ss_pred             HhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516          599 VAKRNSRMVIQAAEQVLRLDPEDGTTHILLS  629 (708)
Q Consensus       599 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  629 (708)
                      ...|++++|...++++++++|++...+...+
T Consensus        90 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~  120 (164)
T 3sz7_A           90 FDMADYKGAKEAYEKGIEAEGNGGSDAMKRG  120 (164)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred             HHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence            9999999999999999999999998766555

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.47  E-value=2e-06  Score=73.41  Aligned_cols=111  Identities=9%  Similarity=-0.032  Sum_probs=75.8

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC----hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 038516          522 TFLSLLSACSHSGLVERGKILWNQMKEHSLIPG----HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS  596 (708)
Q Consensus       522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~  596 (708)
                      .+..+...+...|++++|...|++..+  ..|+    ...+..++..|...|++++|...++++ ...+.+...|..+..
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            344444445555555555555555544  2233    455666777777777777777777765 222246778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516          597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA  634 (708)
Q Consensus       597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  634 (708)
                      ++...|++++|...++++++++|++..++..+..+...
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  145 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP  145 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence            89999999999999999999999998887777766543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.46  E-value=1.2e-06  Score=72.54  Aligned_cols=109  Identities=9%  Similarity=-0.015  Sum_probs=75.8

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~  600 (708)
                      +..+...+.+.|++++|...|++..+  ..| +...|..++.+|.+.|++++|...++++ ...+.+...|..++.++..
T Consensus         7 ~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            7 ARLEGKEYFTKSDWPNAVKAYTEMIK--RAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            44444555566666666666666655  223 3456666777777777777777777766 2232457778888888888


Q ss_pred             cCCHHHHHHHHHHHHhcC------CCCcchHHHHHHHHH
Q 038516          601 KRNSRMVIQAAEQVLRLD------PEDGTTHILLSNLYA  633 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~  633 (708)
                      .|++++|...++++++++      |++..++..+..+..
T Consensus        85 ~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           85 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            999999999999999998      888777777766543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.46  E-value=2e-06  Score=69.89  Aligned_cols=109  Identities=10%  Similarity=0.002  Sum_probs=74.5

Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHH
Q 038516          522 TFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCV  599 (708)
Q Consensus       522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~  599 (708)
                      .+..+...+...|++++|...+++..+.  .| +...+..++..+...|++++|...++++ ...+.+...+..++..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            3444444555556666666666555542  22 3455666666777777777777777665 222245777888888888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516          600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY  632 (708)
Q Consensus       600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  632 (708)
                      ..|++++|...++++++.+|+++..+..++.+.
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  116 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  116 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence            899999999999999999999888877777654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.46  E-value=2.1e-06  Score=74.89  Aligned_cols=97  Identities=7%  Similarity=0.003  Sum_probs=86.8

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      ...+..++..+...|++++|...++++ ...+.+...|..++..+...|++++|...++++++++|+++.++..++.+|.
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            345777888999999999999999987 2232468889999999999999999999999999999999999999999999


Q ss_pred             hcCCchHHHHHHHHHhcC
Q 038516          634 ATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       634 ~~g~~~eA~~~~~~~~~~  651 (708)
                      ..|++++|...++++.+.
T Consensus        93 ~~~~~~~A~~~~~~a~~~  110 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKV  110 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHh
Confidence            999999999999998764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.45  E-value=7.6e-07  Score=75.55  Aligned_cols=106  Identities=8%  Similarity=-0.039  Sum_probs=76.3

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~  600 (708)
                      +..+...+...|++++|...|+++..  ..| +...|..++.+|.+.|++++|...++++ ...|.++..+..++.++..
T Consensus        21 ~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           21 LYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            44444566667777777777777665  233 3556667777788888888888887776 2232456778888888899


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCcchHHHHHH
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSN  630 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  630 (708)
                      .|++++|...+++++++.|+++........
T Consensus        99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  128 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAAQPAHEALAAR  128 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence            999999999999999999988876554443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.45  E-value=3.5e-06  Score=81.68  Aligned_cols=162  Identities=10%  Similarity=-0.051  Sum_probs=119.6

Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCC---CCCh------HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCC---CC--hH
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVL---HPDL------KCWNALLGGYSHYGMAEEAFMVFEVILEHGLR---PD--EI  521 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---p~--~~  521 (708)
                      .+...+..+...|++++|.+.+.+..   +...      ..+..+...+...|++++|+..+++..+....   +.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            34455677788999999999887653   1111      22444666778889999999999999864221   11  34


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCC-------CCCCCH
Q 038516          522 TFLSLLSACSHSGLVERGKILWNQMKEH----SLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESP-------YSEIRI  588 (708)
Q Consensus       522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~  588 (708)
                      +++.+...|...|++++|..+++++.+.    +..+.  ..++..++..|...|++++|...++++.       ....-.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            6788888999999999999999998732    21121  2578889999999999999999998761       110126


Q ss_pred             HHHHHHHHHHHhcCCHHHH-HHHHHHHHhc
Q 038516          589 ELWRTLLSTCVAKRNSRMV-IQAAEQVLRL  617 (708)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~  617 (708)
                      .++..++..+...|+.++| ...+++++.+
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            6788889999999999999 8888888764

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.37  E-value=2e-06  Score=89.04  Aligned_cols=163  Identities=9%  Similarity=-0.022  Sum_probs=113.0

Q ss_pred             cCCHHHHHHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHH
Q 038516          467 NGDLRAAESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILW  543 (708)
Q Consensus       467 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  543 (708)
                      .+++++|...|+....   .....|..+...|.+.|++++|+..|+++++.  .|+...+          . -+...+ .
T Consensus       247 l~~~~~A~~~~~~~~~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~~-~  312 (457)
T 1kt0_A          247 LKSFEKAKESWEMDTKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESKA-S  312 (457)
T ss_dssp             EEEEECCCCGGGSCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHHH-H
T ss_pred             hhhcccCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHHH-H
Confidence            3444455555544331   23456777888888888888888888888873  3332110          0 011000 0


Q ss_pred             HHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516          544 NQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG  622 (708)
Q Consensus       544 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  622 (708)
                      ..       -....|..++.+|.+.|++++|+..++++ ...+.+...|..+..++...|++++|...++++++++|++.
T Consensus       313 ~~-------~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~  385 (457)
T 1kt0_A          313 ES-------FLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK  385 (457)
T ss_dssp             HH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----
T ss_pred             HH-------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Confidence            00       11456778889999999999999999887 33334688899999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhcCCchHHHH-HHHHHhc
Q 038516          623 TTHILLSNLYAATGRWDCVAK-MRRKMKG  650 (708)
Q Consensus       623 ~~~~~l~~~~~~~g~~~eA~~-~~~~~~~  650 (708)
                      .++..++.++...|++++|.+ .+++|..
T Consensus       386 ~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          386 AARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998875 4555543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.36  E-value=2.9e-07  Score=75.09  Aligned_cols=83  Identities=16%  Similarity=0.095  Sum_probs=54.7

Q ss_pred             cCCHHHHHHHHHhCCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHH
Q 038516          568 AGLLDEAENLIAESPYS----EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAK  643 (708)
Q Consensus       568 ~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~  643 (708)
                      .|++++|+..++++...    +.+...|..++..+...|++++|+..++++++++|+++.++..++.+|...|++++|..
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            45666666666665222    22345566677777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHhc
Q 038516          644 MRRKMKG  650 (708)
Q Consensus       644 ~~~~~~~  650 (708)
                      .+++..+
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.36  E-value=1.6e-06  Score=86.72  Aligned_cols=112  Identities=8%  Similarity=0.048  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh
Q 038516          521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~  600 (708)
                      ..+..+...+.+.|++++|++.|++.++.  .|..          ......+++..      ..+.+...|..+..++..
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~~~~~------~~~~~~~~~~nla~~~~~  285 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADGAK------LQPVALSCVLNIGACKLK  285 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHHGG------GHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChHHHHH------HHHHHHHHHHHHHHHHHh
Confidence            34556666777777777777777776651  0000          00000000000      111234455556666666


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      .|++++|+..++++++++|+++.+|..++.+|...|++++|...++++.+
T Consensus       286 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~  335 (370)
T 1ihg_A          286 MSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQE  335 (370)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666554

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.35  E-value=9.6e-07  Score=91.87  Aligned_cols=116  Identities=13%  Similarity=0.084  Sum_probs=92.6

Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRM  606 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~  606 (708)
                      .+.+.|++++|.+.|++..+  ..|+ ...+..++.+|.+.|++++|++.++++ ...+.+...|..++.++...|++++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~e   92 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRA   92 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            45667788888888888776  3443 677888888888888999988888887 3333467889999999999999999


Q ss_pred             HHHHHHHHHhcCCCCcchHHHHHHH--HHhcCCchHHHHHHH
Q 038516          607 VIQAAEQVLRLDPEDGTTHILLSNL--YAATGRWDCVAKMRR  646 (708)
Q Consensus       607 a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~eA~~~~~  646 (708)
                      |+..++++++++|++...+..++.+  +.+.|++++|++.++
T Consensus        93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999999888  888999999999887

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.34  E-value=2.6e-06  Score=71.63  Aligned_cols=112  Identities=7%  Similarity=-0.082  Sum_probs=74.8

Q ss_pred             ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 038516          519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS  596 (708)
Q Consensus       519 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~  596 (708)
                      +...+..+...+...|++++|...|+...+.  .| +...+..++.++...|++++|...++++ ...+.+...|..++.
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   85 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   85 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence            3445555555666666666666666666552  23 2456666777777777777777777666 222245777888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCC-----CcchHHHHHHHH
Q 038516          597 TCVAKRNSRMVIQAAEQVLRLDPE-----DGTTHILLSNLY  632 (708)
Q Consensus       597 ~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~  632 (708)
                      ++...|+++.|...+++++++.|+     +..+...+..+.
T Consensus        86 ~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           86 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence            888888899999999998888887     455454554443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.32  E-value=4.1e-06  Score=86.55  Aligned_cols=163  Identities=7%  Similarity=-0.094  Sum_probs=118.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChH----HHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCcC-hH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHG-LRPDEI----TFLSLLSACSHSGLVERGKILWNQMKEH----SLIPG-HK  556 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p~-~~  556 (708)
                      .+..++..|...|++++|.+++.++...- -.++..    ..+.+-..+...|+++.|..+++.....    +..+. ..
T Consensus        57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  136 (434)
T 4b4t_Q           57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS  136 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence            36778888999999999999988876521 112221    1233333556678999999998887643    33333 55


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC----C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC---C----c
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES----P---YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE---D----G  622 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~----~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~----~  622 (708)
                      ++..|+..|...|++++|..+++++    .   ..+....++..++..|...||+++|...+++++...|.   .    .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            7788999999999999999998876    1   11112556888888999999999999999999876432   2    2


Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHh
Q 038516          623 TTHILLSNLYAATGRWDCVAKMRRKMK  649 (708)
Q Consensus       623 ~~~~~l~~~~~~~g~~~eA~~~~~~~~  649 (708)
                      ..+..++.++...|++++|...+....
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            346677888889999999988877664

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.31  E-value=3.3e-06  Score=87.44  Aligned_cols=95  Identities=9%  Similarity=0.035  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAESPY-SEIR---------------IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      .+..++..|.+.|++++|...|+++.. .+.+               ..+|..+..++...|++++|+..++++++++|+
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  349 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA  349 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence            444555566666666666666655411 1011               577888999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          621 DGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       621 ~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++.+|..++.+|...|++++|+..++++.+.
T Consensus       350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l  380 (457)
T 1kt0_A          350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  380 (457)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999875

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.30  E-value=3.3e-06  Score=81.19  Aligned_cols=113  Identities=6%  Similarity=-0.133  Sum_probs=86.8

Q ss_pred             ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHH
Q 038516          519 DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLS  596 (708)
Q Consensus       519 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~  596 (708)
                      +...+..+...+...|++++|...|++..+  ..| +...|..++.+|.+.|++++|...++++ ...+.+...+..++.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAIT--RNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            455677777788888999999999988887  344 4677888888888999999999988887 334346778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          597 TCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       597 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      ++...|++++|...++++++++|+++..+...++...
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~  117 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL  117 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence            8888999999999999999888887654444444333

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.29  E-value=4.2e-06  Score=83.69  Aligned_cols=139  Identities=9%  Similarity=-0.039  Sum_probs=109.6

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHH
Q 038516          485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVS  563 (708)
Q Consensus       485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~  563 (708)
                      ...|..+...+.+.|++++|+..|++.++.  .|+..          .....       +...+  ..| +...|..++.
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~-------~~~~~--~~~~~~~~~~nla~  281 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAED-------ADGAK--LQPVALSCVLNIGA  281 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCH-------HHHGG--GHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccCh-------HHHHH--HHHHHHHHHHHHHH
Confidence            456888889999999999999999999873  11110          00011       11111  223 3567888999


Q ss_pred             HHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038516          564 LLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVA  642 (708)
Q Consensus       564 ~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~  642 (708)
                      +|.+.|++++|++.++++ ...+.+...|..+..++...|++++|...++++++++|++..++..++.++...++++++.
T Consensus       282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998 3443468889999999999999999999999999999999999999999999999988886


Q ss_pred             HH
Q 038516          643 KM  644 (708)
Q Consensus       643 ~~  644 (708)
                      +.
T Consensus       362 k~  363 (370)
T 1ihg_A          362 KA  363 (370)
T ss_dssp             HC
T ss_pred             HH
Confidence            53

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.28  E-value=1.3e-06  Score=86.53  Aligned_cols=149  Identities=11%  Similarity=-0.021  Sum_probs=86.9

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH
Q 038516          485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL  564 (708)
Q Consensus       485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  564 (708)
                      ...+..+...+.+.|++++|+..|++.+..  .|+...       +...++.+++...+.          ...|..++.+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            456777788888899999999999998874  565432       233445555443321          2367888999


Q ss_pred             HHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH-HhcCCchHHH
Q 038516          565 LSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY-AATGRWDCVA  642 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~eA~  642 (708)
                      |.+.|++++|+..++++ ...+.+...|..+..++...|++++|+..++++++++|++..++..|+.+. ...+..+++.
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~  319 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK  319 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887 333346888999999999999999999999999999999999999998884 4456777888


Q ss_pred             HHHHHHhcCC
Q 038516          643 KMRRKMKGSM  652 (708)
Q Consensus       643 ~~~~~~~~~~  652 (708)
                      ..+++|.+..
T Consensus       320 ~~~~~~l~~~  329 (338)
T 2if4_A          320 EMYKGIFKGK  329 (338)
T ss_dssp             ----------
T ss_pred             HHHHHhhCCC
Confidence            8888776543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.28  E-value=4.5e-05  Score=73.97  Aligned_cols=210  Identities=12%  Similarity=0.008  Sum_probs=128.8

Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHhhHhcC-CHHHHHHHHhhCC---CCChHHHHHHHHHHHhc-C-ChHHHHHHHHH
Q 038516          437 QGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG-DLRAAESIFSQVL---HPDLKCWNALLGGYSHY-G-MAEEAFMVFEV  510 (708)
Q Consensus       437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~-g-~~~~A~~~~~~  510 (708)
                      +|.++.+.+...+ +-+..+++.--..+...| .+++++++++.++   +.+..+|+.-...+.+. + ++++++.++++
T Consensus        72 ~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k  150 (349)
T 3q7a_A           72 RALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHG  150 (349)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence            3444444444433 223334444444444555 4777777777764   34566777766666665 6 77788888888


Q ss_pred             HHHCCCCC-ChHHHHHHHHHHhccCcHH--------HHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCC-------HHHH
Q 038516          511 ILEHGLRP-DEITFLSLLSACSHSGLVE--------RGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGL-------LDEA  574 (708)
Q Consensus       511 m~~~g~~p-~~~~~~~ll~~~~~~~~~~--------~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-------~~~A  574 (708)
                      +.+.  .| |...|+.-...+.+.|.++        ++++.++++++.. .-+...|+....++.+.++       ++++
T Consensus       151 ~L~~--dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eE  227 (349)
T 3q7a_A          151 SLLP--DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDE  227 (349)
T ss_dssp             HTSS--CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHH
T ss_pred             HHHh--CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHH
Confidence            8774  33 5555655544444444444        7777888777632 2245667777777777665       6778


Q ss_pred             HHHHHhC-CCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhcC------CCCcchHHH
Q 038516          575 ENLIAES-PYSEIRIELWRTLLSTCVAKRNS--------------------RMVIQAAEQVLRLD------PEDGTTHIL  627 (708)
Q Consensus       575 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~  627 (708)
                      +++++++ ...+.+...|..+.+.+...|+.                    ......+..++...      +.++-++..
T Consensus       228 Le~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~  307 (349)
T 3q7a_A          228 LIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEY  307 (349)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHH
Confidence            8777776 33335677787777777665543                    22333333333222      455667889


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhc
Q 038516          628 LSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       628 l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      |+++|.+.|+.++|.++++.+.+
T Consensus       308 l~d~~~~~~~~~~a~~~~~~l~~  330 (349)
T 3q7a_A          308 LADSFIEQNRVDDAAKVFEKLSS  330 (349)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHh
Confidence            99999999999999999998864

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.27  E-value=2.9e-06  Score=73.54  Aligned_cols=94  Identities=18%  Similarity=0.182  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC----CCC-C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC------Ccc
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES----PYS-E--IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE------DGT  623 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~-~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~  623 (708)
                      .+..++..+...|++++|.+.++++    +.. .  .....+..+...+...|++++|...+++++++.+.      ...
T Consensus        51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  130 (164)
T 3ro3_A           51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  130 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence            4455556666666666666665554    111 0  01345666667777788888888888887765322      234


Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          624 THILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       624 ~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      .+..++.+|...|++++|.+.+++..+
T Consensus       131 ~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A          131 ACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            577889999999999999998887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.26  E-value=3.2e-05  Score=81.86  Aligned_cols=168  Identities=13%  Similarity=0.026  Sum_probs=138.1

Q ss_pred             CHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCC----------hHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccC
Q 038516          469 DLRAAESIFSQVL---HPDLKCWNALLGGYSHYGM----------AEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSG  534 (708)
Q Consensus       469 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~  534 (708)
                      ..++|.+.++.++   +.+...|+.--..+...|+          ++++++.++++.+.  .| +...|..-...+.+.+
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence            3467788888775   3456778887777777777          89999999999985  45 5677888777888888


Q ss_pred             --cHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcC-CHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc--------
Q 038516          535 --LVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAG-LLDEAENLIAES-PYSEIRIELWRTLLSTCVAK--------  601 (708)
Q Consensus       535 --~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~--------  601 (708)
                        +++++++.++++.+.  .| +...|+.-..++.+.| .+++++++++++ ...+.+...|......+...        
T Consensus       122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence              779999999999983  34 4777888888888899 899999999998 34435788899888887663        


Q ss_pred             ------CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038516          602 ------RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC  640 (708)
Q Consensus       602 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e  640 (708)
                            +.++++.+.+++++.++|++.++|..+.+++...|++++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                  557999999999999999999999999999999998665

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.26  E-value=0.00025  Score=68.80  Aligned_cols=230  Identities=12%  Similarity=0.038  Sum_probs=157.4

Q ss_pred             cCCChHHHHHHHHHHhHCCCccCHH-HHHHHHHHHhCcc-cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhc-C-CHH
Q 038516          396 RMGDGECAIKLFCKMCREGLKCDNF-ALSGALSACADLA-ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKN-G-DLR  471 (708)
Q Consensus       396 ~~~~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~  471 (708)
                      ..+..++|++++++++..  .|+.. .++.--..+...+ .++++..+++.+...+ +-+..+++.-...+.+. + +++
T Consensus        66 ~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~  142 (349)
T 3q7a_A           66 KEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV  142 (349)
T ss_dssp             TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred             hCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence            344556778877777764  34433 3444444444455 4788888888777654 34555565555555555 6 788


Q ss_pred             HHHHHHhhCCC---CChHHHHHHHHHHHhcCChH--------HHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-----
Q 038516          472 AAESIFSQVLH---PDLKCWNALLGGYSHYGMAE--------EAFMVFEVILEHGLRPDEITFLSLLSACSHSGL-----  535 (708)
Q Consensus       472 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----  535 (708)
                      +++++++.+..   .|..+|+.-.-.+.+.|.++        ++++.++++++.. .-|...|+.....+.+.+.     
T Consensus       143 ~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~  221 (349)
T 3q7a_A          143 SEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS  221 (349)
T ss_dssp             HHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence            99999998874   46777877666666666666        8999999999963 2267778887777777765     


Q ss_pred             --HHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCH--------------------HHHHHHHHhCCCC-------C
Q 038516          536 --VERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLL--------------------DEAENLIAESPYS-------E  585 (708)
Q Consensus       536 --~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~-------~  585 (708)
                        ++++++++++++.  ..|+ ...|+.+-..+.+.|+.                    .+..++..++...       .
T Consensus       222 ~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (349)
T 3q7a_A          222 RSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPL  299 (349)
T ss_dssp             HHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCS
T ss_pred             HHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCC
Confidence              7889999988887  4554 66777777777777653                    3444454444221       3


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCCcchHHHHHHH
Q 038516          586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVL-RLDPEDGTTHILLSNL  631 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~  631 (708)
                      +++..+..++..|...|+.++|..+++.+. +.+|-....|...+..
T Consensus       300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~  346 (349)
T 3q7a_A          300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE  346 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            678889999999999999999999999987 6788877777665543

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.26  E-value=1.9e-06  Score=72.55  Aligned_cols=73  Identities=12%  Similarity=0.056  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhCC-C-------CCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAESP-Y-------SEIRIELW----RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT  624 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~-------~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  624 (708)
                      .|..+..++.+.|++++|+..++++. .       .|.+...|    ...+.++...|++++|+..|+++++++|++...
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            56667777777777777777766652 2       43346678    899999999999999999999999999999886


Q ss_pred             HHHHH
Q 038516          625 HILLS  629 (708)
Q Consensus       625 ~~~l~  629 (708)
                      ...+.
T Consensus       139 ~~~~~  143 (159)
T 2hr2_A          139 TPGKE  143 (159)
T ss_dssp             CTTHH
T ss_pred             HHHHH
Confidence            54443

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.25  E-value=9.9e-07  Score=71.86  Aligned_cols=94  Identities=13%  Similarity=0.042  Sum_probs=71.9

Q ss_pred             cCcHHHHHHHHHHhhHCCC-Cc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 038516          533 SGLVERGKILWNQMKEHSL-IP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQ  609 (708)
Q Consensus       533 ~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~  609 (708)
                      .|++++|+..|++..+.+. .| +...+..++.+|...|++++|...++++ ...|.+...+..++.++...|++++|+.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            5677788888888876421 23 3567888889999999999999999887 2233468888889999999999999999


Q ss_pred             HHHHHHhcCCCCcchHH
Q 038516          610 AAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       610 ~~~~~~~~~p~~~~~~~  626 (708)
                      .++++++..|+++....
T Consensus        83 ~~~~al~~~p~~~~~~~   99 (117)
T 3k9i_A           83 LLLKIIAETSDDETIQS   99 (117)
T ss_dssp             HHHHHHHHHCCCHHHHH
T ss_pred             HHHHHHHhCCCcHHHHH
Confidence            99999999999887544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.24  E-value=3.9e-06  Score=68.67  Aligned_cols=98  Identities=7%  Similarity=0.002  Sum_probs=65.2

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~  600 (708)
                      +..+...+.+.|++++|...|++..+  ..| +...|..++.++.+.|++++|+..++++ ...|.+...|..++.++..
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~   97 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQ--KEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN   97 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            33444556667777777777777766  334 3566667777777788888888777776 2232456777888888888


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCc
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDG  622 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~  622 (708)
                      .|++++|...++++++++|+++
T Consensus        98 ~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           98 EHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHC------
T ss_pred             cCCHHHHHHHHHHHHHhCcCCC
Confidence            8888888888888888888764

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.24  E-value=3.4e-06  Score=73.36  Aligned_cols=80  Identities=16%  Similarity=0.067  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc-chHHHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG-TTHILLSNLY  632 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~  632 (708)
                      ...|..++.+|.+.|++++|+..++++ ...+.+...|..++.++...|++++|...++++++++|+++ .+...+..+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            456888889999999999999999887 33435688899999999999999999999999999999998 5565665554


Q ss_pred             Hh
Q 038516          633 AA  634 (708)
Q Consensus       633 ~~  634 (708)
                      ..
T Consensus       143 ~~  144 (162)
T 3rkv_A          143 ER  144 (162)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.22  E-value=5.5e-07  Score=72.51  Aligned_cols=94  Identities=14%  Similarity=0.011  Sum_probs=79.8

Q ss_pred             ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------cchHH
Q 038516          554 GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------GTTHI  626 (708)
Q Consensus       554 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~  626 (708)
                      +...+..++..+.+.|++++|.+.++++ ...+.+...|..++.++...|++++|+..++++++++|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4566778889999999999999999887 3333468889999999999999999999999999999999      77888


Q ss_pred             HHHHHHHhcCCchHHHHHHHH
Q 038516          627 LLSNLYAATGRWDCVAKMRRK  647 (708)
Q Consensus       627 ~l~~~~~~~g~~~eA~~~~~~  647 (708)
                      .++.++...|++++|...+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            999999999988887765543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.22  E-value=8.8e-06  Score=67.20  Aligned_cols=60  Identities=10%  Similarity=-0.004  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKE  548 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  548 (708)
                      .+..+...+.+.|++++|+..|++.++.  .|+ ...|..+..+|...|++++|++.+++.++
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~   70 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVE   70 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4555666667777777777777777663  443 44455566666666666666666666654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.21  E-value=1.1e-05  Score=66.84  Aligned_cols=104  Identities=12%  Similarity=0.016  Sum_probs=70.3

Q ss_pred             HHHHHhccCcHHHHHHHHHHhhHCCCCcC-h---HHHHHHHHHHHhcCCHHHHHHHHHhCCC-CCCC---HHHHHHHHHH
Q 038516          526 LLSACSHSGLVERGKILWNQMKEHSLIPG-H---KHYSCMVSLLSRAGLLDEAENLIAESPY-SEIR---IELWRTLLST  597 (708)
Q Consensus       526 ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~~l~~~  597 (708)
                      +...+...|++++|...|+.+.+.  .|+ .   ..+..++.++.+.|++++|...++++.. .+.+   +..+..++.+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence            334455666666666666666552  122 1   3566677777778888888877777621 1122   5667778888


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038516          598 CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNL  631 (708)
Q Consensus       598 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  631 (708)
                      +...|+.++|...++++++..|+++........+
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            8889999999999999999999887655544443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.19  E-value=0.00019  Score=69.32  Aligned_cols=180  Identities=9%  Similarity=0.032  Sum_probs=112.2

Q ss_pred             HHHHHHHHhhCC---CCChHHHHHHHHHHHhcC--ChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCc-HHHHHHHH
Q 038516          470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYG--MAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGL-VERGKILW  543 (708)
Q Consensus       470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~  543 (708)
                      +++++.+++.+.   +.+..+|+.-...+...|  ++++++.+++++.+.. +-|...|+.-...+...|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            445555555553   345666666666666666  3677777777777742 2255556655555556666 57777777


Q ss_pred             HHhhHCCCCcChHHHHHHHHHHHhc--------------CCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc-------
Q 038516          544 NQMKEHSLIPGHKHYSCMVSLLSRA--------------GLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK-------  601 (708)
Q Consensus       544 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~-------  601 (708)
                      +.+++.. +-+...|+....++.+.              +.+++++++++++ ...|.+...|..+.+.+...       
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~  247 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS  247 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence            7777632 22355566555555544              4567777777776 23334677777766666554       


Q ss_pred             ----CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH---hcCCchHHHHHHHHHhcC
Q 038516          602 ----RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA---ATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       602 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~eA~~~~~~~~~~  651 (708)
                          +.++++++.++++++++|++.-.+..++.+..   ..|..++....+.++.+-
T Consensus       248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence                45788889999999999988554444433222   356777888888877653

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.18  E-value=1e-05  Score=64.77  Aligned_cols=101  Identities=9%  Similarity=-0.076  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCC--CHHHHHHHHHH
Q 038516          521 ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEI--RIELWRTLLST  597 (708)
Q Consensus       521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~~l~~~  597 (708)
                      ..+..+...+...|++++|...+++..+.. +.+...+..++..+...|++++|.+.++++ ...+.  +...|..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA   85 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence            334445555666666666666666665521 123455666677777777777777777666 22223  56777777778


Q ss_pred             HHhc-CCHHHHHHHHHHHHhcCCCCc
Q 038516          598 CVAK-RNSRMVIQAAEQVLRLDPEDG  622 (708)
Q Consensus       598 ~~~~-~~~~~a~~~~~~~~~~~p~~~  622 (708)
                      +... |+.++|.+.++++++..|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            8888 888888888888888888764

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.18  E-value=1.3e-05  Score=66.29  Aligned_cols=77  Identities=5%  Similarity=-0.018  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHH
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES----PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILL  628 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  628 (708)
                      .+..++..+...|++++|...++++    +..+++    ...+..++..+...|++++|...++++++..| ++.....+
T Consensus        40 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l  118 (131)
T 1elr_A           40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKC  118 (131)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHH
Confidence            3344444444444444444444443    111112    55666777777788888888888888888877 45556666


Q ss_pred             HHHHHh
Q 038516          629 SNLYAA  634 (708)
Q Consensus       629 ~~~~~~  634 (708)
                      +.++..
T Consensus       119 ~~~~~~  124 (131)
T 1elr_A          119 QQAEKI  124 (131)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.18  E-value=1.9e-05  Score=81.47  Aligned_cols=121  Identities=17%  Similarity=0.139  Sum_probs=84.9

Q ss_pred             HHHhcCCHHHHHHHHHhC-----CCCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chHH
Q 038516          564 LLSRAGLLDEAENLIAES-----PYSE---I-RIELWRTLLSTCVAKRNSRMVIQAAEQVLR-----LDPEDG---TTHI  626 (708)
Q Consensus       564 ~~~~~g~~~~A~~~~~~~-----~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~  626 (708)
                      .+..+|++++|+.+++++     ..-+   | -..+++.|+..|...|++++|+.+++++++     +.|+++   ..+.
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            355677777777776654     1111   1 244577777888888888888888888875     345554   4588


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhhhc
Q 038516          627 LLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVTDE  702 (708)
Q Consensus       627 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  702 (708)
                      .||.+|..+|++++|..+++++.+--. +                ..| ..||...++...+.+...++++.+.++
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~-~----------------~lG-~~Hp~~~~~~~~l~~~~~e~~~~~~ae  455 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILL-V----------------THG-PSHPITKDLEAMRMQTEMELRMFRQNE  455 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHH-H----------------HTC-TTSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHH-H----------------HhC-CCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998754100 0                011 249999999999988887777765443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.18  E-value=0.0003  Score=67.85  Aligned_cols=193  Identities=9%  Similarity=0.028  Sum_probs=135.2

Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcC--CHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCC-hHHHHHHH
Q 038516          435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNG--DLRAAESIFSQVL---HPDLKCWNALLGGYSHYGM-AEEAFMVF  508 (708)
Q Consensus       435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~~~  508 (708)
                      ++++..++..+...+ +-+..+++.-..++.+.|  .+++++.+++.+.   +.|..+|+.-...+...|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            566777777776654 445566665555566666  4889999998885   4678888888888888888 58999999


Q ss_pred             HHHHHCCCCCChHHHHHHHHHHhcc--------------CcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhc-----
Q 038516          509 EVILEHGLRPDEITFLSLLSACSHS--------------GLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRA-----  568 (708)
Q Consensus       509 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-----  568 (708)
                      +++++.. .-|...|+.....+.+.              +.++++++++...+.  ..|+ ...|+.+-..+.+.     
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~  245 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE  245 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence            9999863 22566666655544443              568889999998887  4564 56666665566555     


Q ss_pred             ------CCHHHHHHHHHhCCCCCCCHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 038516          569 ------GLLDEAENLIAESPYSEIRIELWRTLLSTC-----VAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY  632 (708)
Q Consensus       569 ------g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  632 (708)
                            +.++++++.++++....|+. .|..+..+.     ...+..++....+.++.+++|-..+.|..+..-+
T Consensus       246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence                  46788999888883332443 444333222     2367888999999999999999988888776543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.16  E-value=4.7e-06  Score=85.92  Aligned_cols=123  Identities=12%  Similarity=-0.043  Sum_probs=89.8

Q ss_pred             HhccCcHHHHHHHHHHhhHC---CC---CcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCC-HHHHHH
Q 038516          530 CSHSGLVERGKILWNQMKEH---SL---IPG-HKHYSCMVSLLSRAGLLDEAENLIAES--------PYSEIR-IELWRT  593 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~---~~---~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~-~~~~~~  593 (708)
                      +...|++++|+.++++..+.   -+   .|+ ..+++.|+.+|...|++++|+.+++++        +..-|+ ...++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            44567777777777666543   11   222 456778888888888888888877665        222122 445788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcch---HHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          594 LLSTCVAKRNSRMVIQAAEQVLR-----LDPEDGTT---HILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       594 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      |+..|...|++++|+.+++++++     +.|+++.+   ...|..++.++|++++|..+++++++..
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999999999999998886     46777654   5588889999999999999999987754

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.15  E-value=2.1e-05  Score=60.20  Aligned_cols=69  Identities=16%  Similarity=0.047  Sum_probs=61.9

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          585 EIRIELWRTLLSTCVAKRN---SRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       585 ~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      +.++..+..+..++...++   .++|...++++++++|+++.++..+|..+...|++++|+..|+++.+...
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p   74 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSND   74 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            4678888888888765554   79999999999999999999999999999999999999999999988654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.15  E-value=8.7e-06  Score=63.87  Aligned_cols=66  Identities=17%  Similarity=0.074  Sum_probs=61.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      .++..|..++..+...|++++|+..++++++++|+++.+|..++.+|...|++++|.+.+++..+.
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            468889999999999999999999999999999999999999999999999999999999987653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.13  E-value=2.7e-06  Score=84.20  Aligned_cols=115  Identities=9%  Similarity=-0.019  Sum_probs=88.9

Q ss_pred             hHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 038516          520 EITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCV  599 (708)
Q Consensus       520 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  599 (708)
                      ...+..+...+.+.|++++|...|++..+  +.|+..       .+...|+++++...+.        ..+|..+..++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~-------~~~~~~~~~~~~~~l~--------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDF-------MFQLYGKYQDMALAVK--------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHH-------HHTCCHHHHHHHHHHH--------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccch-------hhhhcccHHHHHHHHH--------HHHHHHHHHHHH
Confidence            34466666777888888888888888776  334322       1233444455444332        237888889999


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ..|++++|+..++++++++|++..+|..++.+|...|++++|...++++.+.
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.09  E-value=1.4e-05  Score=69.15  Aligned_cols=133  Identities=14%  Similarity=0.015  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCC-CCh----HHHHHHHHHHhccCcHHHHHHHHHHhhHC----CCCc-ChH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLR-PDE----ITFLSLLSACSHSGLVERGKILWNQMKEH----SLIP-GHK  556 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~p-~~~  556 (708)
                      ++..+...+...|++++|+..+++..+.... ++.    ..+..+...+...|++++|...+++..+.    +..+ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4555566666667777777666666542100 111    24555666677777777777777776543    1111 144


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhC----CCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516          557 HYSCMVSLLSRAGLLDEAENLIAES----PYS---EIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       557 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  619 (708)
                      .+..++..+...|++++|.+.++++    ...   ......+..+...+...|++++|...+++++++..
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            5667778888888888888877765    111   01234566777778889999999999998887643

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.09  E-value=1.4e-05  Score=61.30  Aligned_cols=82  Identities=18%  Similarity=0.237  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      ...+..++..+...|++++|...++++ ...+.+...|..+...+...|++++|...++++++++|+++..+..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            456777888888889999998888877 2232467788888889999999999999999999999999999999998887


Q ss_pred             hcC
Q 038516          634 ATG  636 (708)
Q Consensus       634 ~~g  636 (708)
                      ..|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.09  E-value=9.6e-06  Score=65.62  Aligned_cols=79  Identities=11%  Similarity=0.049  Sum_probs=67.9

Q ss_pred             HHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          573 EAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       573 ~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +|.+.++++ ...+.+...|..++..+...|++++|+..++++++++|+++..|..++.+|...|++++|...+++..+.
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455666665 3343568889999999999999999999999999999999999999999999999999999999988653

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.07  E-value=1.8e-06  Score=72.46  Aligned_cols=86  Identities=12%  Similarity=0.156  Sum_probs=64.7

Q ss_pred             hcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc
Q 038516          567 RAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRN----------SRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT  635 (708)
Q Consensus       567 ~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  635 (708)
                      +.+.+++|.+.+++. ...|.+...|..+..++...++          +++|+..++++++++|++..+|..+|.+|...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            445556666666555 2232356666666666555544          56999999999999999999999999999988


Q ss_pred             C-----------CchHHHHHHHHHhcCC
Q 038516          636 G-----------RWDCVAKMRRKMKGSM  652 (708)
Q Consensus       636 g-----------~~~eA~~~~~~~~~~~  652 (708)
                      |           ++++|++.|+++.+..
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            5           8999999999987753

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.07  E-value=3.3e-05  Score=61.74  Aligned_cols=66  Identities=9%  Similarity=0.044  Sum_probs=61.5

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          586 IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++...|..++..+...|++++|...++++++++|+++.++..++.+|...|++++|++.++++.+.
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            356778889999999999999999999999999999999999999999999999999999998765

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.01  E-value=6.7e-05  Score=77.29  Aligned_cols=158  Identities=14%  Similarity=0.063  Sum_probs=117.7

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCCC----------------hHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcCh
Q 038516          493 GGYSHYGMAEEAFMVFEVILEHGLRPD----------------EITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGH  555 (708)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~  555 (708)
                      ..+.+.|++++|++.|.++.+......                ...+..+...|...|++++|.+++..+.+. +..++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            456677888999998888887522111                023677888999999999999999988764 222221


Q ss_pred             ----HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC------
Q 038516          556 ----KHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD------  618 (708)
Q Consensus       556 ----~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------  618 (708)
                          .+.+.+...+...|++++|..+++..       ........++..++..+...|++++|...+++++...      
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                23445556666789999999988775       2221236678889999999999999999999988642      


Q ss_pred             CCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          619 PEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       619 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      |....++..++++|...|++++|..++++...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            23345688999999999999999999988754

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.93  E-value=0.0001  Score=61.74  Aligned_cols=110  Identities=11%  Similarity=-0.113  Sum_probs=59.7

Q ss_pred             cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 038516          535 LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQA  610 (708)
Q Consensus       535 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~  610 (708)
                      ++++|.++|++..+.| .|+..    |...|...+..++|.++++++... .++..+..+...|..    .+|.++|...
T Consensus        10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            3444455555444433 11111    444444444455555555554322 344555555555554    5566666666


Q ss_pred             HHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHhcCC
Q 038516          611 AEQVLRLDPEDGTTHILLSNLYAA----TGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       611 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~  652 (708)
                      ++++.+.  .++..+..|+.+|..    .+++++|.+++++..+.|
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            6666655  455666677777766    667777777777666554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.92  E-value=5.5e-05  Score=76.78  Aligned_cols=115  Identities=11%  Similarity=0.089  Sum_probs=78.0

Q ss_pred             HHHhcCCHHHHHHHHHhC-----CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chHH
Q 038516          564 LLSRAGLLDEAENLIAES-----PYSEIR----IELWRTLLSTCVAKRNSRMVIQAAEQVLR-----LDPEDG---TTHI  626 (708)
Q Consensus       564 ~~~~~g~~~~A~~~~~~~-----~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~  626 (708)
                      .+.+.|++++|+.+++++     ..-+++    ..+++.++..|...|++++|+.+++++++     +.|+++   ..+.
T Consensus       296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~  375 (429)
T 3qwp_A          296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM  375 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred             HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence            344556666666666554     111111    34566677777777888888887777775     345544   4588


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHH
Q 038516          627 LLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMR  696 (708)
Q Consensus       627 ~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  696 (708)
                      .|+.+|..+|++++|..+++++.+- ..+.                .| ..||...+++..|.+...+|+
T Consensus       376 nLa~~~~~~g~~~eA~~~~~~Al~i-~~~~----------------lG-~~Hp~~~~~~~~l~~~~~e~~  427 (429)
T 3qwp_A          376 KVGKLQLHQGMFPQAMKNLRLAFDI-MRVT----------------HG-REHSLIEDLILLLEECDANIR  427 (429)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH-HHHH----------------TC-TTSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHH-HHHh----------------cC-CCChHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999887541 0000                11 249999999999999888776

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.84  E-value=0.00018  Score=76.20  Aligned_cols=148  Identities=12%  Similarity=0.018  Sum_probs=121.4

Q ss_pred             CChHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCc----------HHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHH
Q 038516          499 GMAEEAFMVFEVILEHGLRPDE-ITFLSLLSACSHSGL----------VERGKILWNQMKEHSLIP-GHKHYSCMVSLLS  566 (708)
Q Consensus       499 g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~  566 (708)
                      ...++|++.+++++..  .|+. ..|+.--.++...|+          ++++++.++.+.+  ..| +..+|..-..++.
T Consensus        43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHH
Confidence            3456889999999994  7765 446665556666666          9999999999987  344 4677888888899


Q ss_pred             hcC--CHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhc-------
Q 038516          567 RAG--LLDEAENLIAES-PYSEIRIELWRTLLSTCVAKR-NSRMVIQAAEQVLRLDPEDGTTHILLSNLYAAT-------  635 (708)
Q Consensus       567 ~~g--~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------  635 (708)
                      +.|  ++++++++++++ ...+.+...|..-.......| ..+++.+.++++++.+|++.++|...+.++...       
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence            999  779999999998 334357899999999999988 899999999999999999999999999998885       


Q ss_pred             -------CCchHHHHHHHHHhc
Q 038516          636 -------GRWDCVAKMRRKMKG  650 (708)
Q Consensus       636 -------g~~~eA~~~~~~~~~  650 (708)
                             +++++|.+.++++..
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~  220 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFF  220 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHHHh
Confidence                   557888888877654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.79  E-value=0.0001  Score=56.25  Aligned_cols=65  Identities=22%  Similarity=0.303  Sum_probs=60.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +...+..+...+...|++++|+..++++++.+|+++..+..++.+|...|++++|...+++..+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            35678888889999999999999999999999999999999999999999999999999988764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.79  E-value=5.9e-05  Score=76.38  Aligned_cols=84  Identities=14%  Similarity=0.238  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHh-----cCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCcee
Q 038516          589 ELWRTLLSTCVAKRNSRMVIQAAEQVLR-----LDPEDG---TTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLS  660 (708)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~---~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~  660 (708)
                      .+++.++.+|...|++++|+.+++++++     +.|+++   ..+..||.+|..+|++++|..+++++.+--. +.    
T Consensus       341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~-~~----  415 (433)
T 3qww_A          341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIME-VA----  415 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HH----
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHH-HH----
Confidence            4466666677777777777777777765     344444   4588999999999999999999998754100 00    


Q ss_pred             EEEecCeEEEEEeCCCCCcchHHHHHHHHH
Q 038516          661 WIEAKNNVHVFSSGDQSHPKIDDAQAELHR  690 (708)
Q Consensus       661 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  690 (708)
                                  .| ..||...++...|++
T Consensus       416 ------------lG-~~Hp~~~~l~~~l~~  432 (433)
T 3qww_A          416 ------------HG-KDHPYISEIKQEIES  432 (433)
T ss_dssp             ------------TC-TTCHHHHHHHHHHHC
T ss_pred             ------------cC-CCChHHHHHHHHHhc
Confidence                        11 249999998887753

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.76  E-value=3.5e-05  Score=64.68  Aligned_cols=105  Identities=12%  Similarity=0.062  Sum_probs=57.5

Q ss_pred             HhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcH----------HHHHHHHHHhhHCCCCcC-hHHHHHHHH
Q 038516          496 SHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLV----------ERGKILWNQMKEHSLIPG-HKHYSCMVS  563 (708)
Q Consensus       496 ~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~----------~~a~~~~~~~~~~~~~p~-~~~~~~l~~  563 (708)
                      .+.+.+++|++.+++..+.  .| +...|..+..++...+++          ++|+..|++.++  +.|+ ...|..++.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~--ldP~~~~A~~~LG~   88 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIGN   88 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHH--hCcCcHHHHHHHHH
Confidence            3445566666666666663  34 344455555555555443          244444444443  3332 333444444


Q ss_pred             HHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516          564 LLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       564 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  626 (708)
                      +|...|.+            . |+..         ...|++++|+..|+++++++|++.....
T Consensus        89 ay~~lg~l------------~-P~~~---------~a~g~~~eA~~~~~kAl~l~P~~~~y~~  129 (158)
T 1zu2_A           89 AYTSFAFL------------T-PDET---------EAKHNFDLATQFFQQAVDEQPDNTHYLK  129 (158)
T ss_dssp             HHHHHHHH------------C-CCHH---------HHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHhccc------------C-cchh---------hhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence            44433332            1 2211         0126899999999999999999865433

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.66  E-value=0.00063  Score=56.76  Aligned_cols=112  Identities=11%  Similarity=-0.049  Sum_probs=92.5

Q ss_pred             CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh----cCCHHHH
Q 038516          499 GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR----AGLLDEA  574 (708)
Q Consensus       499 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A  574 (708)
                      +++++|+++|++..+.| .|+..    |...|...+.+++|.++|++..+.|   +...+..|...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            46889999999999987 44444    6667778888999999999998864   45677778888888    8899999


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 038516          575 ENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p  619 (708)
                      .++++++... .++..+..|...|..    .+|.++|...++++.+...
T Consensus        81 ~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           81 AQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            9999998554 678888888888888    8899999999999988743

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.58  E-value=8.2e-06  Score=79.91  Aligned_cols=237  Identities=11%  Similarity=0.115  Sum_probs=154.0

Q ss_pred             CcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHhc
Q 038516           47 SPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAVS  126 (708)
Q Consensus        47 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~  126 (708)
                      .+.+|+.|..+..+.|++.+|++.|-+..  |+..|..+|.+..+.|. +++-+..+...++..-  ++..=+.|+-+|+
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIkA~--Dps~y~eVi~~A~~~~~-~edLv~yL~MaRk~~k--e~~IDteLi~ayA  127 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIKAD--DPSSYMEVVQAANTSGN-WEELVKYLQMARKKAR--ESYVETELIFALA  127 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCCCS--CCCSSSHHHHHTTTSSC-CTTHHHHHHTTSTTCC--STTTTHHHHHHHH
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHhCC--ChHHHHHHHHHHHhCCC-HHHHHHHHHHHHHHhc--ccccHHHHHHHHH
Confidence            56789999999999999999988875444  66678899999999999 9998888887776533  3444567888999


Q ss_pred             cccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCC------------------------CCcc
Q 038516          127 LLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGD------------------------KDAV  182 (708)
Q Consensus       127 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~------------------------~~~~  182 (708)
                      +.+++.+-++++.       .|+..-...+.+-|...|.++.|.-+|..+..                        .++.
T Consensus       128 k~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k  200 (624)
T 3lvg_A          128 KTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR  200 (624)
T ss_dssp             TSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred             hhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            8888766554432       36665666667777777777777777765542                        3566


Q ss_pred             cHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcc
Q 038516          183 AWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYS  262 (708)
Q Consensus       183 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  262 (708)
                      +|-.+-.+|...+.+.-|.-.--.+.-   .|+  ....++..|-..|.+++-..+++..+.. -.....+|+-|.-.|+
T Consensus       201 tWKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYs  274 (624)
T 3lvg_A          201 TWKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYS  274 (624)
T ss_dssp             SHHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHH
Confidence            777777777777777766544333321   121  2233455566677777766666655421 1335566777777776


Q ss_pred             cCCChHHHHHHHhccCC----C-------ChhHHHHHHHHHHcCCCchHHH
Q 038516          263 KCSDTQTAFSVFTRIEN----P-------DLVSWNSMIAGYMENGNGEKAV  302 (708)
Q Consensus       263 ~~g~~~~a~~~~~~~~~----~-------~~~~~~~li~~~~~~g~~~~A~  302 (708)
                      +- +.++.++.++..-.    |       ....|..++-.|.+-.+++.|.
T Consensus       275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            65 34444444433221    2       2345666666666666666554

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.56  E-value=5.3e-05  Score=74.35  Aligned_cols=239  Identities=10%  Similarity=0.047  Sum_probs=162.6

Q ss_pred             CchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHh
Q 038516          148 EDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACS  227 (708)
Q Consensus       148 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  227 (708)
                      ..+.+|+.|..+..+.|.+.+|++.|-  +..|+..|..+|.+..+.|.+++-+..+...++..-.|.  .=+.|+-+|+
T Consensus        52 n~p~VWs~LgkAqL~~~~v~eAIdsyI--kA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayA  127 (624)
T 3lvg_A           52 NEPAVWSQLAKAQLQKGMVKEAIDSYI--KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESY--VETELIFALA  127 (624)
T ss_dssp             CCCCCSSSHHHHTTTSSSCTTTTTSSC--CCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHH
T ss_pred             CCccHHHHHHHHHHccCchHHHHHHHH--hCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHH
Confidence            346678888888888888888876653  345667788899999999999998888877766544443  3457888888


Q ss_pred             ccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC------------------------CChh
Q 038516          228 RMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN------------------------PDLV  283 (708)
Q Consensus       228 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~------------------------~~~~  283 (708)
                      +.+++.+-++.+       -.||..-.....+-|...|.++.|.-+|..+..                        .++.
T Consensus       128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k  200 (624)
T 3lvg_A          128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR  200 (624)
T ss_dssp             TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred             hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence            888776544333       134554455555555666666666555554431                        5778


Q ss_pred             HHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHH
Q 038516          284 SWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMY  363 (708)
Q Consensus       284 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  363 (708)
                      +|..+-.+|...+.+.-|.-.--.+.-.    ||  .+..++..|...|-+++-..+++.-.... .....+++-|.-.|
T Consensus       201 tWKeV~~ACvd~~EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILY  273 (624)
T 3lvg_A          201 TWKEVCFACVDGKEFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY  273 (624)
T ss_dssp             SHHHHTHHHHHSCTTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCchHHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHH
Confidence            8999999999999988776555444322    22  22345566888899999888888765221 45677888888888


Q ss_pred             HhcCCChhHHHHHhhcCCC-----------CEeeehhhHHHHhcCCChHHHHH
Q 038516          364 FKNGDAESPQKVFMLIAEK-----------DIVLWTEMIIGHSRMGDGECAIK  405 (708)
Q Consensus       364 ~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~A~~  405 (708)
                      +|- ++++..+.++....+           ....|..++-.|.+-.+++.|..
T Consensus       274 sKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          274 SKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             HSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             Hhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            875 677777776655442           33567777777777777776643

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.53  E-value=0.00043  Score=57.35  Aligned_cols=65  Identities=14%  Similarity=0.008  Sum_probs=40.8

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcC-C-CCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          586 IRIELWRTLLSTCVAKR---NSRMVIQAAEQVLRLD-P-EDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      ++..+.-.+.+++.+++   +.++++.+++.+++.+ | ++...+..|+-.|.+.|+|++|++.++.+.+
T Consensus        30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            45556566666666655   4556666666666666 5 3455666666666666666666666666654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.48  E-value=0.00036  Score=56.08  Aligned_cols=83  Identities=13%  Similarity=-0.013  Sum_probs=58.9

Q ss_pred             HHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038516          538 RGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVL  615 (708)
Q Consensus       538 ~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  615 (708)
                      +|+..|++..+  ..| +...+..++..|...|++++|...++++ ...+.+...|..++.++...|++++|...+++++
T Consensus         3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34555666654  233 3566777777888888888888887776 2232457778888888888888888888888888


Q ss_pred             hcCCCCc
Q 038516          616 RLDPEDG  622 (708)
Q Consensus       616 ~~~p~~~  622 (708)
                      ++.|++.
T Consensus        81 ~~~~~~~   87 (115)
T 2kat_A           81 AAAQSRG   87 (115)
T ss_dssp             HHHHHHT
T ss_pred             Hhccccc
Confidence            8877543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.48  E-value=0.00043  Score=53.77  Aligned_cols=65  Identities=9%  Similarity=0.151  Sum_probs=40.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516          561 MVSLLSRAGLLDEAENLIAES-PYSEIRIE-LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTH  625 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  625 (708)
                      .+..+.+.|++++|...++++ ...+.+.. .|..++.++...|++++|...++++++++|+++.++
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            345566666777776666665 22213445 666666666666777777777777777776666554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.43  E-value=0.0013  Score=63.52  Aligned_cols=144  Identities=13%  Similarity=0.033  Sum_probs=76.9

Q ss_pred             CCCChHHHHHHHHHHH--hcCC---hHHHHHHHHHHHHCCCCCCh-HHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC
Q 038516          481 LHPDLKCWNALLGGYS--HYGM---AEEAFMVFEVILEHGLRPDE-ITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG  554 (708)
Q Consensus       481 ~~~~~~~~~~li~~~~--~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~  554 (708)
                      .+.+...|...+++..  ..++   ..+|..+|++.++.  .|+. ..+..+..++...          .  .. +. .+
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~----------~--~~-~~-~~  253 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVR----------H--SQ-HP-LD  253 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH----------H--HH-SC-CC
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHH----------h--cc-CC-Cc
Confidence            3456677777776543  3333   46788888888884  6764 3444444343300          0  00 00 00


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA  634 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  634 (708)
                      .....          ....|.+-...+...+.++.++..+...+...|++++|...++++++++|+ ...|..+|+++.-
T Consensus       254 ~~~~~----------~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~  322 (372)
T 3ly7_A          254 EKQLA----------ALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEM  322 (372)
T ss_dssp             HHHHH----------HHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHH
T ss_pred             hhhHH----------HHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence            00000          012222222233333345666666655555567777777777777777653 4455666777777


Q ss_pred             cCCchHHHHHHHHHhcC
Q 038516          635 TGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       635 ~g~~~eA~~~~~~~~~~  651 (708)
                      .|++++|.+.++++...
T Consensus       323 ~G~~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          323 KGMNREAADAYLTAFNL  339 (372)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhc
Confidence            77777777777666554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.41  E-value=0.0052  Score=59.45  Aligned_cols=146  Identities=14%  Similarity=0.026  Sum_probs=93.8

Q ss_pred             CCCchhHHHHHHHhhH--hcC---CHHHHHHHHhhCC--CCC-hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-h
Q 038516          450 HGVEMSVCGSLVDMYA--KNG---DLRAAESIFSQVL--HPD-LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-E  520 (708)
Q Consensus       450 ~~~~~~~~~~l~~~~~--~~g---~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~  520 (708)
                      .+.+...|..++.+..  ..+   ...+|..+|++.+  .|+ ...|..+.-+|..             ....  .|. .
T Consensus       190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~-------------~~~~--~~~~~  254 (372)
T 3ly7_A          190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV-------------RHSQ--HPLDE  254 (372)
T ss_dssp             SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH-------------HHHH--SCCCH
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-------------Hhcc--CCCch
Confidence            4667788888776654  233   3578999999886  454 4455554444440             0111  111 1


Q ss_pred             HHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Q 038516          521 ITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCV  599 (708)
Q Consensus       521 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~  599 (708)
                      .....          ...+.+   ..... ..+.+...|..+...+...|++++|...++++...+|+...|..+...+.
T Consensus       255 ~~~~~----------l~~a~~---a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~  321 (372)
T 3ly7_A          255 KQLAA----------LNTEID---NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYE  321 (372)
T ss_dssp             HHHHH----------HHHHHH---HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             hhHHH----------HHHHHH---HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            11110          012222   11111 22445777888877777789999999999998444477777777788888


Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          600 AKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       600 ~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      ..|+.++|...+++++.++|..+.
T Consensus       322 ~~G~~~eA~e~~~~AlrL~P~~~t  345 (372)
T 3ly7_A          322 MKGMNREAADAYLTAFNLRPGANT  345 (372)
T ss_dssp             HTTCHHHHHHHHHHHHHHSCSHHH
T ss_pred             HCCCHHHHHHHHHHHHhcCCCcCh
Confidence            899999999999999999998754

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.31  E-value=0.00097  Score=51.66  Aligned_cols=51  Identities=16%  Similarity=0.126  Sum_probs=26.1

Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCcC-hH-HHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIPG-HK-HYSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p~-~~-~~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      .+...|++++|...++++.+.  .|+ .. .+..++.+|...|++++|.+.++++
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            444555555555555555542  222 33 4455555555555555555555554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.16  E-value=0.0017  Score=65.76  Aligned_cols=93  Identities=9%  Similarity=-0.031  Sum_probs=64.5

Q ss_pred             ccCcHHHHHHHHHHhhHC---CCC---cC-hHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCC-HHHHHHHH
Q 038516          532 HSGLVERGKILWNQMKEH---SLI---PG-HKHYSCMVSLLSRAGLLDEAENLIAES--------PYSEIR-IELWRTLL  595 (708)
Q Consensus       532 ~~~~~~~a~~~~~~~~~~---~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~-~~~~~~l~  595 (708)
                      ..|++++|+.++++..+.   -+.   |+ ..+++.|+.+|...|++++|+.+++++        +..-|+ ...++.|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            346777777777766542   122   22 456778888888888888888887775        211132 44578888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHh-----cCCCCcch
Q 038516          596 STCVAKRNSRMVIQAAEQVLR-----LDPEDGTT  624 (708)
Q Consensus       596 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~  624 (708)
                      ..|...|++++|+.+++++++     +.|+++.+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~  423 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI  423 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence            888999999999999998886     45776654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.08  E-value=0.0036  Score=63.43  Aligned_cols=97  Identities=12%  Similarity=-0.043  Sum_probs=63.3

Q ss_pred             HhccCcHHHHHHHHHHhhHC---CCCcC----hHHHHHHHHHHHhcCCHHHHHHHHHhC--------CCCCCC-HHHHHH
Q 038516          530 CSHSGLVERGKILWNQMKEH---SLIPG----HKHYSCMVSLLSRAGLLDEAENLIAES--------PYSEIR-IELWRT  593 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~~-~~~~~~  593 (708)
                      +.+.|++++|+.++++..+.   -+.|+    ..+++.|+.+|...|++++|+.+++++        +..-|+ ...++.
T Consensus       297 ~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~n  376 (429)
T 3qwp_A          297 LKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMK  376 (429)
T ss_dssp             HHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHH
Confidence            44556667777776666543   11121    456777777777788888877777665        221122 345777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHh-----cCCCCcchHH
Q 038516          594 LLSTCVAKRNSRMVIQAAEQVLR-----LDPEDGTTHI  626 (708)
Q Consensus       594 l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~  626 (708)
                      |+..|...|++++|+.+++++++     +.|+++.+-.
T Consensus       377 La~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  414 (429)
T 3qwp_A          377 VGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED  414 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence            88888888888888888888876     4677766543

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.06  E-value=0.0025  Score=49.45  Aligned_cols=63  Identities=21%  Similarity=0.089  Sum_probs=43.9

Q ss_pred             ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhH
Q 038516          484 DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKE  548 (708)
Q Consensus       484 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  548 (708)
                      +...|..+...|...|++++|+..|+++++.  .| +...|..+..++...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4566677777777777777777777777774  34 345566666677777777777777777665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.94  E-value=0.0057  Score=47.78  Aligned_cols=75  Identities=11%  Similarity=0.070  Sum_probs=57.1

Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC-----C---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES-----P---YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  626 (708)
                      ..-...|+..+.+.|+++.|...++.+     +   ...+...++..+..++.+.|+++.|...++++++++|++..+..
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            334455677777777777777777665     1   11245778999999999999999999999999999999988755


Q ss_pred             HHH
Q 038516          627 LLS  629 (708)
Q Consensus       627 ~l~  629 (708)
                      .+.
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.83  E-value=0.1  Score=41.33  Aligned_cols=141  Identities=9%  Similarity=-0.010  Sum_probs=101.8

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHH
Q 038516          495 YSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       495 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  574 (708)
                      +.-.|..++..++..+....   .+..-+++++--....-+-+-..+.++.+-+-   -|          ...+|++...
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV   80 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV   80 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence            34568888888888888773   35556777766666666666666666666442   11          2245566666


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCc
Q 038516          575 ENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLG  654 (708)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~  654 (708)
                      ...+-.+.   .+.+..+..+.....+|+-+.-..++..++.-+|-+++....++.+|.+.|+..+|.+++.++.++|++
T Consensus        81 i~C~~~~n---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           81 VECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhc---chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            66555554   245566777788888999999999988877777777889999999999999999999999999988874

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.75  E-value=0.0052  Score=50.90  Aligned_cols=91  Identities=9%  Similarity=-0.023  Sum_probs=61.1

Q ss_pred             cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcC---CHHHHHHHHHhCCCCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 038516          535 LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAG---LLDEAENLIAESPYSE-I--RIELWRTLLSTCVAKRNSRMVI  608 (708)
Q Consensus       535 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~  608 (708)
                      ....+.+-|.+..+.+. ++..+...+..++.+.+   +.+++..++++.-... |  ..+.+-.+.-+|.+.|++++|.
T Consensus        13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34445555555544333 55666666667777766   4556776666652221 3  3566777778889999999999


Q ss_pred             HHHHHHHhcCCCCcchHH
Q 038516          609 QAAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       609 ~~~~~~~~~~p~~~~~~~  626 (708)
                      +.++++++.+|++..+..
T Consensus        92 ~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHH
Confidence            999999999999866443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.75  E-value=0.0034  Score=58.02  Aligned_cols=88  Identities=11%  Similarity=0.035  Sum_probs=68.6

Q ss_pred             HHHHHHHHHhCCCCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHhc-CCchH
Q 038516          571 LDEAENLIAESPYSEIR---IELWRTLLSTCVA-----KRNSRMVIQAAEQVLRLDPED-GTTHILLSNLYAAT-GRWDC  640 (708)
Q Consensus       571 ~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~e  640 (708)
                      ..+|...++++....|+   ...|..++..|..     -|+.++|++.|+++++++|+. ..++...++.++.. |++++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            34566666665222244   5577888777777     499999999999999999975 99999999999884 99999


Q ss_pred             HHHHHHHHhcCCCccCCc
Q 038516          641 VAKMRRKMKGSMLGKEPG  658 (708)
Q Consensus       641 A~~~~~~~~~~~~~~~~~  658 (708)
                      |.+.+++..+..++..|+
T Consensus       259 a~~~L~kAL~a~p~~~P~  276 (301)
T 3u64_A          259 FDEALDRALAIDPESVPH  276 (301)
T ss_dssp             HHHHHHHHHHCCGGGCSS
T ss_pred             HHHHHHHHHcCCCCCCCC
Confidence            999999998876654444

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.50  E-value=0.012  Score=46.76  Aligned_cols=70  Identities=11%  Similarity=0.032  Sum_probs=29.3

Q ss_pred             cChHHHHHHHHHHHhcCCHHH---HHHHHHhCCCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516          553 PGHKHYSCMVSLLSRAGLLDE---AENLIAESPYSE-I--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG  622 (708)
Q Consensus       553 p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  622 (708)
                      |+..+-..++.++.+..+..+   +..++++.-... |  ....+-.+.-++.+.|++++|.+.++.+++.+|+|.
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~  108 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNN  108 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCH
Confidence            344444444444554444333   444444432221 1  122233333344444444444444444444444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.47  E-value=0.022  Score=44.38  Aligned_cols=65  Identities=17%  Similarity=-0.015  Sum_probs=55.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD-------PEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++...-.++..+...|+++.|..-++++++..       +..+.++..|+.+|.+.|++++|...++++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            44556678888999999999999999999853       334567899999999999999999999988764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.29  E-value=0.03  Score=42.40  Aligned_cols=71  Identities=8%  Similarity=-0.018  Sum_probs=55.4

Q ss_pred             cChHHHHHHHHHHHhcCC---HHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          553 PGHKHYSCMVSLLSRAGL---LDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       553 p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      .+...+..++.++...++   .++|..+++++ ...|.+...+..++..+...|++++|...++++++.+|.++.
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            456777777777765544   68999999887 334346778888888899999999999999999999998433

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.17  E-value=1.2  Score=47.00  Aligned_cols=124  Identities=9%  Similarity=-0.020  Sum_probs=78.2

Q ss_pred             CChHHHHHHHHHHHHCCCCCChHH----HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHH
Q 038516          499 GMAEEAFMVFEVILEHGLRPDEIT----FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       499 g~~~~A~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  574 (708)
                      .+.+.|...|......+ ..+...    ...+.......+...++...+.......  ++.......+....+.|+++.|
T Consensus       228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a  304 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL  304 (618)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHH
Confidence            48899999999887643 223322    2223334444553556666666655432  3333344555566688999999


Q ss_pred             HHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516          575 ENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLS  629 (708)
Q Consensus       575 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  629 (708)
                      ...|+.++.... .....--+..+....|+.++|...++++.+  +  .+.|-.|+
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~--~--~~fYg~lA  356 (618)
T 1qsa_A          305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ--Q--RGFYPMVA  356 (618)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--S--CSHHHHHH
T ss_pred             HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc--C--CChHHHHH
Confidence            999999976522 233333445566778999999999999875  3  24455553

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.15  E-value=0.04  Score=43.87  Aligned_cols=88  Identities=7%  Similarity=0.018  Sum_probs=62.5

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeE
Q 038516          586 IRIELWRTLLSTCVAKR---NSRMVIQAAEQVLRLDPE-DGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSW  661 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~  661 (708)
                      |++.+--.+.+++.++.   +..+++.+++.+++.+|. ....+..|+-.+.+.|+|++|++..+.+.+.          
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~----------  107 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH----------  107 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT----------
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh----------
Confidence            56666666666666644   455788888888887774 3556778888888888888888888888763          


Q ss_pred             EEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhh
Q 038516          662 IEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLV  699 (708)
Q Consensus       662 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  699 (708)
                                      .|.+.++......+..+|.+.+
T Consensus       108 ----------------eP~N~QA~~Lk~~Ie~ki~kd~  129 (134)
T 3o48_A          108 ----------------ERNNKQVGALKSMVEDKIQKEE  129 (134)
T ss_dssp             ----------------CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             ----------------CCCCHHHHHHHHHHHHHHHhhc
Confidence                            5666666666666666666544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.06  E-value=0.13  Score=41.56  Aligned_cols=65  Identities=6%  Similarity=0.028  Sum_probs=32.6

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhcCCC-CcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          586 IRIELWRTLLSTCVAKR---NSRMVIQAAEQVLRLDPE-DGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      ++..+--.+.+++.++.   +..+++.+++.++..+|. .......|+-.+.+.|+|++|+++.+.+.+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~  105 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  105 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            44444444444444433   334455555555555553 223344555555555555555555555544

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.04  E-value=0.064  Score=42.62  Aligned_cols=83  Identities=8%  Similarity=-0.052  Sum_probs=49.5

Q ss_pred             hcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHH---HHHHHHHhhHCCCCc--ChHHHHHHHHHHHhcCCH
Q 038516          497 HYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVER---GKILWNQMKEHSLIP--GHKHYSCMVSLLSRAGLL  571 (708)
Q Consensus       497 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~  571 (708)
                      .......+.+-|.+....|. |+..+-..+..++.++.....   ++.+++.+.+.+ .|  .....-.|+-++.+.|++
T Consensus        13 ~~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y   90 (126)
T 1nzn_A           13 SVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEY   90 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhH
Confidence            33344555555665555443 555555555666666665444   777777776642 23  344455566777777777


Q ss_pred             HHHHHHHHhC
Q 038516          572 DEAENLIAES  581 (708)
Q Consensus       572 ~~A~~~~~~~  581 (708)
                      ++|.++++.+
T Consensus        91 ~~A~~~~~~l  100 (126)
T 1nzn_A           91 EKALKYVRGL  100 (126)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777776

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.94  E-value=0.022  Score=61.06  Aligned_cols=59  Identities=7%  Similarity=0.024  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      .+..-...|...|+++.|+.+.++++...|.+-.+|..|+.+|...|+|+.|+-.+.-+
T Consensus       339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            34444556778999999999999999999999999999999999999999999998877

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.87  E-value=0.18  Score=56.35  Aligned_cols=153  Identities=16%  Similarity=0.098  Sum_probs=94.3

Q ss_pred             HhcCCChHHHHH-HHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHH
Q 038516          394 HSRMGDGECAIK-LFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRA  472 (708)
Q Consensus       394 ~~~~~~~~~A~~-~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  472 (708)
                      ....+++++|.+ ++..+      |+......++..+.+.|..+.|.++.+..       .     .-.......|+++.
T Consensus       609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~-------~-----~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQ-------D-----QKFELALKVGQLTL  670 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCH-------H-----HHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCc-------c-----hheehhhhcCCHHH
Confidence            345677777766 44211      11222255666667777777777665311       1     11234567899999


Q ss_pred             HHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516          473 AESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLI  552 (708)
Q Consensus       473 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  552 (708)
                      |.++.+.+  .+...|..+...+.+.|+++.|.+.|.++..         |..+...+...|+.+...++-+.....|. 
T Consensus       671 A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~-  738 (814)
T 3mkq_A          671 ARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK-  738 (814)
T ss_dssp             HHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc-
Confidence            99998776  4568899999999999999999999998753         22334444446666655555544444331 


Q ss_pred             cChHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          553 PGHKHYSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                           ++.-..+|.+.|++++|.+++.++
T Consensus       739 -----~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          739 -----FNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             -----HHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             -----hHHHHHHHHHcCCHHHHHHHHHHc
Confidence                 233334455667777776666554

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.66  E-value=0.36  Score=41.02  Aligned_cols=127  Identities=18%  Similarity=0.115  Sum_probs=78.7

Q ss_pred             hhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 038516          463 MYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKIL  542 (708)
Q Consensus       463 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  542 (708)
                      .....|+++.|.++.+.+  .+...|..|.......|+++-|.+.|.+...         |..+.-.|...|+.+...++
T Consensus        14 LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kl   82 (177)
T 3mkq_B           14 LALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKM   82 (177)
T ss_dssp             HHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHH
Confidence            344678888888877665  4667888888888888888888888877543         23344445556776666655


Q ss_pred             HHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038516          543 WNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQ  613 (708)
Q Consensus       543 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  613 (708)
                      -+.....|-      ++.-...+.-.|+++++.+++.+.... |.      -......+|-.+.|.++.+.
T Consensus        83 a~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~~r~-~e------A~~~A~t~g~~~~a~~~~~~  140 (177)
T 3mkq_B           83 QNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEGGSL-PL------AYAVAKANGDEAAASAFLEQ  140 (177)
T ss_dssp             HHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHTTCH-HH------HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHCCCh-HH------HHHHHHHcCcHHHHHHHHHH
Confidence            555544332      344445566778888888888776432 11      11112335666666666554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.34  E-value=0.021  Score=52.85  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHhhHCCCCcC---hHHHHHHHHHHHhc-----CCHHHHHHHHHhCCCCCC--CHHHHHHHHHHHHh-cCCH
Q 038516          536 VERGKILWNQMKEHSLIPG---HKHYSCMVSLLSRA-----GLLDEAENLIAESPYSEI--RIELWRTLLSTCVA-KRNS  604 (708)
Q Consensus       536 ~~~a~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~-~~~~  604 (708)
                      ...|...+++.++  +.|+   ...|..|+..|...     |+.++|.+.|+++....|  +...+......+.. .|+.
T Consensus       179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            4455555555555  4454   34566666666663     677777777777622223  25555555555555 4777


Q ss_pred             HHHHHHHHHHHhcCCCC
Q 038516          605 RMVIQAAEQVLRLDPED  621 (708)
Q Consensus       605 ~~a~~~~~~~~~~~p~~  621 (708)
                      ++|.+.+++++..+|..
T Consensus       257 ~~a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          257 AGFDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHHHcCCCCC
Confidence            78888888888777763

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=95.28  E-value=0.11  Score=58.06  Aligned_cols=21  Identities=14%  Similarity=0.077  Sum_probs=12.6

Q ss_pred             HHHHHHHHhcCCchHHHHHHH
Q 038516          626 ILLSNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       626 ~~l~~~~~~~g~~~eA~~~~~  646 (708)
                      ....++|.+.|+|++|..+.+
T Consensus       753 ~~a~~~~~~~~~~~~A~~lA~  773 (814)
T 3mkq_A          753 QGAKDLLIKSQRFSEAAFLGS  773 (814)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHH
Confidence            344455666667777766555

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=94.06  E-value=8.8  Score=42.29  Aligned_cols=255  Identities=12%  Similarity=0.023  Sum_probs=133.1

Q ss_pred             cccCCChHHHHHHHhccCC----CCh--hHHHHHHHHHHcCCCchHHHHHHHHHHHcCC-CC-----CCHhHHHHHHHHH
Q 038516          261 YSKCSDTQTAFSVFTRIEN----PDL--VSWNSMIAGYMENGNGEKAVDMFVALRRMSL-LK-----PDEYTFAAIISAT  328 (708)
Q Consensus       261 ~~~~g~~~~a~~~~~~~~~----~~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~~-----p~~~t~~~ll~~~  328 (708)
                      ....|+.++++.+++....    .+.  ..-..+.-+....|..+++..++........ +.     +....-..+--+.
T Consensus       384 lIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGl  463 (963)
T 4ady_A          384 VIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGL  463 (963)
T ss_dssp             HHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHH
T ss_pred             hhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHH
Confidence            4566788888888877653    222  2223344456666766678887777665411 00     1112222333333


Q ss_pred             cCCCCc-cchHHHHHHHHHHCCCCch--hHHhHHHHHHHhcCCChhHHHHHhhcCCC-C--EeeehhhHHHHhcCCChHH
Q 038516          329 SALPAS-AYGKPLHALVIKTGYDSSV--FVGTTLLNMYFKNGDAESPQKVFMLIAEK-D--IVLWTEMIIGHSRMGDGEC  402 (708)
Q Consensus       329 ~~~~~~-~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~--~~~~~~li~~~~~~~~~~~  402 (708)
                      +..|.- +++...+..++...- ...  ...-+|...+.-.|+.+....++..+.+. +  +.-.-.+.-++...|+.+.
T Consensus       464 a~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~e~  542 (963)
T 4ady_A          464 AAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQEL  542 (963)
T ss_dssp             HSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCGGG
T ss_pred             HhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCChHH
Confidence            333332 244444444443221 111  11123333344556666666666654332 1  1122234445557788888


Q ss_pred             HHHHHHHHhHCCCccCHHHHH---HHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhh
Q 038516          403 AIKLFCKMCREGLKCDNFALS---GALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQ  479 (708)
Q Consensus       403 A~~~~~~m~~~g~~p~~~t~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  479 (708)
                      +..+++.+.... .|. .-|.   .+.-+|+..|+.....+++..+.... ..+.+-...+.-++...|+.+.+.++++.
T Consensus       543 ~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~  619 (963)
T 4ady_A          543 ADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQL  619 (963)
T ss_dssp             GHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred             HHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence            888888776531 222 2222   34456788899888887888777542 23344333444445556766667777765


Q ss_pred             CC-CCChHHH--HHHHHHHHhcCCh-HHHHHHHHHHHHCCCCCChHH
Q 038516          480 VL-HPDLKCW--NALLGGYSHYGMA-EEAFMVFEVILEHGLRPDEIT  522 (708)
Q Consensus       480 ~~-~~~~~~~--~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~  522 (708)
                      +. ..|..+-  ..+.-+....|+. .+++.++..+..   .+|..+
T Consensus       620 L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V  663 (963)
T 4ady_A          620 LSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV  663 (963)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred             HHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence            54 2343333  3333344445544 578888888875   445444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.54  E-value=1.1  Score=36.64  Aligned_cols=112  Identities=12%  Similarity=0.072  Sum_probs=69.0

Q ss_pred             CCChHHHHHHHHHHHhcCCh------HHHHHHHHHHHHCCCCCChHH-HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC
Q 038516          482 HPDLKCWNALLGGYSHYGMA------EEAFMVFEVILEHGLRPDEIT-FLSLLSACSHSGLVERGKILWNQMKEHSLIPG  554 (708)
Q Consensus       482 ~~~~~~~~~li~~~~~~g~~------~~A~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~  554 (708)
                      +.|..+|-..+...-+.|++      ++..++|++.... ++|+... +...+..+.+                      
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIr----------------------   66 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVR----------------------   66 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHH----------------------
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHH----------------------
Confidence            45677888877777777888      7777888888775 5665311 1111111110                      


Q ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516          555 HKHYSCMVSLLSRAGLLDEAENLIAES--PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT  624 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  624 (708)
                         |.    .+...++.++|.++|+.+  ..+ .-..+|......-.++|+++.|.+++.+++.+.|.....
T Consensus        67 ---YA----~~~ei~D~d~aR~vy~~a~~~hK-kFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~  130 (161)
T 4h7y_A           67 ---FA----ELKAIQEPDDARDYFQMARANCK-KFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM  130 (161)
T ss_dssp             ---HH----HHHHHHCGGGCHHHHHHHHHHCT-TBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred             ---HH----HHHHhcCHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence               10    011224555555555554  111 126677777777788999999999999999988886553

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.41  E-value=3.2  Score=35.19  Aligned_cols=127  Identities=12%  Similarity=0.070  Sum_probs=86.9

Q ss_pred             hCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHH
Q 038516          430 ADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFE  509 (708)
Q Consensus       430 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~  509 (708)
                      ...|+++.|.++.+.+      .+...|..|.+...+.|+++-|++.|.....     +..+.-.|...|+.+...++-+
T Consensus        16 L~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-----~~~L~~Ly~~tg~~e~L~kla~   84 (177)
T 3mkq_B           16 LEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-----FDKLSFLYLVTGDVNKLSKMQN   84 (177)
T ss_dssp             HHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-----HHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-----HHHHHHHHHHhCCHHHHHHHHH
Confidence            3567777777776554      3567888899999999999999999987643     3445556667788877776666


Q ss_pred             HHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCC
Q 038516          510 VILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESP  582 (708)
Q Consensus       510 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  582 (708)
                      .....|      -++.....+.-.|+++++.++|.+.-   .-|...      -.....|..+.|.++.+++.
T Consensus        85 iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~---r~~eA~------~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           85 IAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGG---SLPLAY------AVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTT---CHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCC---ChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence            666554      24445556667899999999886653   223211      12233567788888888773

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=93.32  E-value=0.28  Score=39.96  Aligned_cols=54  Identities=9%  Similarity=-0.057  Sum_probs=46.9

Q ss_pred             hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          600 AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       600 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      ..+|.++|..+|+.++.+...-+-+|...+.--.++|+...|++++.+..+.+.
T Consensus        72 ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~  125 (161)
T 4h7y_A           72 AIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA  125 (161)
T ss_dssp             HHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence            458999999999999988777777788888888999999999999999887654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=92.32  E-value=3.6  Score=32.84  Aligned_cols=139  Identities=9%  Similarity=-0.055  Sum_probs=80.1

Q ss_pred             cCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHH
Q 038516          396 RMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAES  475 (708)
Q Consensus       396 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  475 (708)
                      -.|..++..++..+...+   .+..-++.++......-+-+-..++++.+-+   ..|          ...+|++.....
T Consensus        19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~C~NlKrVi~   82 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDKCQNLKSVVE   82 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGGCSCTHHHHH
T ss_pred             HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHhhhcHHHHHH
Confidence            356677777777766543   2344455555444444444444444333321   111          123444444444


Q ss_pred             HHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516          476 IFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLI  552 (708)
Q Consensus       476 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  552 (708)
                      -+-.+- .+...+...+..+...|+-++-.+++..+... -+|+.....-+..+|.+.|+..+|.+++.++-+.|++
T Consensus        83 C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           83 CGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            443332 33444555667777788888888887775443 3667777777777888888888888888888777654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=92.14  E-value=0.43  Score=39.83  Aligned_cols=121  Identities=12%  Similarity=0.063  Sum_probs=62.1

Q ss_pred             CCCCCChHH--HHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcC-------hHHHHHHHHHHHhcCCHHHHHHHHHhC--
Q 038516          514 HGLRPDEIT--FLSLLSACSHSGLVERGKILWNQMKEH-SLIPG-------HKHYSCMVSLLSRAGLLDEAENLIAES--  581 (708)
Q Consensus       514 ~g~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~--  581 (708)
                      .|+.|....  +..-+..+...|.++.|+-+.+.+... +..|+       ..++..+++++...|++..|...|+++  
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            455665433  444455677778888887777765543 22232       234556677777788887777777664  


Q ss_pred             ----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          582 ----PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       582 ----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                          ..+.++.  ..++. .   ..       ....-..+ +.+......++.+|.+.|++++|+.+++.+
T Consensus        92 ~~k~l~k~~s~--~~~~~-~---~s-------s~p~s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~I  148 (167)
T 3ffl_A           92 QKKALSKTSKV--RPSTG-N---SA-------STPQSQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGI  148 (167)
T ss_dssp             HHHCC---------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred             HHHHHhcCCCc--ccccc-c---cC-------CCcccccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence                1110111  00000 0   00       00000111 223356678999999999999999998754

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=90.85  E-value=1.9  Score=39.22  Aligned_cols=157  Identities=16%  Similarity=0.085  Sum_probs=97.9

Q ss_pred             HHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCH
Q 038516          493 GGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLL  571 (708)
Q Consensus       493 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  571 (708)
                      ....+.|+.++|+.....-++.  .| |...-..++..+|-.|++++|.+-++...+  +.|+...-..+...+.++   
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~--l~p~~~~~a~~yr~lI~a---   77 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKA---   77 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHH---
T ss_pred             HHHHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--hCchhhHHHHHHHHHHHH---
Confidence            3456778899999988888886  44 666677788889999999999998888876  455543322222222222   


Q ss_pred             HHHHH-HHHh--CCCC-CCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHH
Q 038516          572 DEAEN-LIAE--SPYS-EIRIELWRTLLSTCV--AKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMR  645 (708)
Q Consensus       572 ~~A~~-~~~~--~~~~-~~~~~~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~  645 (708)
                      +...+ +|..  .|.. .........++.+..  ..|+.+.|...-.++++.-|..+....             .  .-|
T Consensus        78 E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~-------------~--~~F  142 (273)
T 1zbp_A           78 AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN-------------D--TSF  142 (273)
T ss_dssp             HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET-------------T--EEE
T ss_pred             HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC-------------C--CCc
Confidence            22221 2211  1211 123444555555544  479999999999999999888776333             1  114


Q ss_pred             HHHhcCCCccCCceeEEEecCeEEEE
Q 038516          646 RKMKGSMLGKEPGLSWIEAKNNVHVF  671 (708)
Q Consensus       646 ~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (708)
                      +-+.+...+.-|-+..+.++|..+..
T Consensus       143 ~wi~D~D~RlGpv~E~i~~~G~Y~Wl  168 (273)
T 1zbp_A          143 SDVRDIDDRLGGYIELFSTAGNYFLV  168 (273)
T ss_dssp             SCEEESSTTTTTEEEEECTTSCEEEE
T ss_pred             chhhccccCCcceEEEEEeCCeEEEe
Confidence            45555666666666666555655544

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.68  E-value=5.8  Score=32.09  Aligned_cols=74  Identities=8%  Similarity=-0.002  Sum_probs=51.8

Q ss_pred             CcChHHHHHHHHHHHhcCCHH---HHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516          552 IPGHKHYSCMVSLLSRAGLLD---EAENLIAESPYSEI--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTH  625 (708)
Q Consensus       552 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  625 (708)
                      .|+..+-..++.++.+..+.+   ++..++++.-...|  ..+.+-.+.-++.+.|++++|.++.+.+++.+|+|..+.
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~  114 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  114 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHH
Confidence            456666556667777766544   45555555511112  456667777789999999999999999999999986543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=90.52  E-value=1.8  Score=36.08  Aligned_cols=121  Identities=13%  Similarity=0.032  Sum_probs=58.5

Q ss_pred             HHhhHhcCCHHHHHHHHhhCC-----CCCh-------HHHHHHHHHHHhcCChHHHHHHHHHHHHCC-CCCChH-HHHHH
Q 038516          461 VDMYAKNGDLRAAESIFSQVL-----HPDL-------KCWNALLGGYSHYGMAEEAFMVFEVILEHG-LRPDEI-TFLSL  526 (708)
Q Consensus       461 ~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~-~~~~l  526 (708)
                      +..+...|.++.|+-+.+.+.     .+++       .++..+..++...|++..|...|++.++.. .-|... +...+
T Consensus        27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~  106 (167)
T 3ffl_A           27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST  106 (167)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence            455556677777766665542     2331       134455566666677777777776654321 111111 11000


Q ss_pred             HHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHH
Q 038516          527 LSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTL  594 (708)
Q Consensus       527 l~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l  594 (708)
                       .   .......         .....++.+.-.-+..+|...|++++|+.+++.+|.+.-++.+-..|
T Consensus       107 -~---~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~L  161 (167)
T 3ffl_A          107 -G---NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLL  161 (167)
T ss_dssp             -----------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHH
T ss_pred             -c---ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHH
Confidence             0   0000000         00122233444446777888888888888888887663444443333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=90.14  E-value=4.8  Score=32.10  Aligned_cols=76  Identities=8%  Similarity=-0.015  Sum_probs=49.1

Q ss_pred             CCcChHHHHHHHHHHHhcCCHH---HHHHHHHhCCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchH
Q 038516          551 LIPGHKHYSCMVSLLSRAGLLD---EAENLIAESPYSEI--RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTH  625 (708)
Q Consensus       551 ~~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  625 (708)
                      -.|+..+--.++.++.+..+.+   ++..++++.-...|  ..+.+-.+.-++.+.|++++|.+..+.+++.+|+|..+.
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~  115 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  115 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence            3455555555666666666543   45555555411112  356677777788888999999999999999999876543


Q ss_pred             H
Q 038516          626 I  626 (708)
Q Consensus       626 ~  626 (708)
                      .
T Consensus       116 ~  116 (134)
T 3o48_A          116 A  116 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.94  E-value=8.4  Score=38.85  Aligned_cols=91  Identities=16%  Similarity=0.197  Sum_probs=58.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhCCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHh---cCCCCc----c
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAESPY----SEIR---IELWRTLLSTCVAKRNSRMVIQAAEQVLR---LDPEDG----T  623 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~----~  623 (708)
                      ...|+..|...|++.+|.+++..++.    ..+.   ..++...+..|...+|+..|...+.++..   -.+.++    .
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            34567778888888888888777621    1011   34455566677778888888888777642   122222    2


Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHH
Q 038516          624 THILLSNLYAATGRWDCVAKMRRKM  648 (708)
Q Consensus       624 ~~~~l~~~~~~~g~~~eA~~~~~~~  648 (708)
                      .+...|.++...++|.+|.+.|..+
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            4556777777788888887766655

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=89.17  E-value=0.91  Score=45.08  Aligned_cols=60  Identities=17%  Similarity=0.077  Sum_probs=48.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          591 WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       591 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      ...++..+...|+.+++...+++++..+|-+...|..|..+|...|+..+|.+.++.+++
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344556666788888888888888888888888888888888888888888888877644

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=87.78  E-value=37  Score=37.50  Aligned_cols=261  Identities=9%  Similarity=-0.035  Sum_probs=132.7

Q ss_pred             HHHcCCCCccchHHHHHHHHHHC--CCCchhHHhHHHHHHHhcCCChhHHHHHhhcCC-CC----------EeeehhhHH
Q 038516          326 SATSALPASAYGKPLHALVIKTG--YDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAE-KD----------IVLWTEMII  392 (708)
Q Consensus       326 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~----------~~~~~~li~  392 (708)
                      -+....|+.+++..+++.....+  -.+....-..+.-+....|.-+++...+..... .+          +..-.++.-
T Consensus       382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL  461 (963)
T 4ady_A          382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI  461 (963)
T ss_dssp             HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred             hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence            34667788888877776554321  112223333444445566666666666655432 12          011122333


Q ss_pred             HHhcCCC-hHHHHHHHHHHhHCCCccCH--HHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516          393 GHSRMGD-GECAIKLFCKMCREGLKCDN--FALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD  469 (708)
Q Consensus       393 ~~~~~~~-~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  469 (708)
                      +++..|. -+++.+.+..+....- +..  ..-..+-..+...|+-+....++..+.+.. ..+..-...+.-++.-.|+
T Consensus       462 Gla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          462 GLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTC
T ss_pred             HHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCC
Confidence            3333332 2456666666655321 111  111122233456677777777777766532 1122222233333445677


Q ss_pred             HHHHHHHHhhCC-CCChH-HHH---HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHH
Q 038516          470 LRAAESIFSQVL-HPDLK-CWN---ALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWN  544 (708)
Q Consensus       470 ~~~A~~~~~~~~-~~~~~-~~~---~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  544 (708)
                      .+.+..+++.+. ..+.. -|.   ++..+|+-.|+.....++++.+.... ..+......+.-++...|+.+.+.++++
T Consensus       540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~  618 (963)
T 4ady_A          540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ  618 (963)
T ss_dssp             GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence            777776666653 23322 232   23456777888877777888888741 2122222222224545566555666666


Q ss_pred             HhhHCCCCcChHHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCCHHHH
Q 038516          545 QMKEHSLIPGHKHYSCMVSLLSRAGLL-DEAENLIAESPYSEIRIELW  591 (708)
Q Consensus       545 ~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~  591 (708)
                      .+.+. ..|....-..+.-+....|.. .+|.+.+..+... ++..+-
T Consensus       619 ~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D-~d~~Vr  664 (963)
T 4ady_A          619 LLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD-PVDFVR  664 (963)
T ss_dssp             TGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC-SSHHHH
T ss_pred             HHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC-CCHHHH
Confidence            55553 345555444555555555543 5777788777544 455443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=87.12  E-value=7.5  Score=28.88  Aligned_cols=86  Identities=17%  Similarity=0.159  Sum_probs=56.1

Q ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516          434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILE  513 (708)
Q Consensus       434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  513 (708)
                      ..++|..|-+.+...+.  ...+--.-+..+.+.|++++|..+.+...-||...|-+|-.  .+.|-.+++..-+.++..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            34555555555554443  22222222345668899999999999888899988877643  567888888888878877


Q ss_pred             CCCCCChHHHH
Q 038516          514 HGLRPDEITFL  524 (708)
Q Consensus       514 ~g~~p~~~~~~  524 (708)
                      .| .|....|.
T Consensus        97 sg-~p~~q~Fa  106 (115)
T 2uwj_G           97 SS-DPALADFA  106 (115)
T ss_dssp             CS-SHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            76 55555554

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=86.79  E-value=8  Score=28.78  Aligned_cols=86  Identities=20%  Similarity=0.207  Sum_probs=54.3

Q ss_pred             cHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516          434 ILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILE  513 (708)
Q Consensus       434 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  513 (708)
                      ..++|..|-+.+...+.  ...+--.-+..+.+.|++++|..+.+...-||...|-+|-.  .+.|-.+++..-+.++..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            34555555555544442  22221222344567899999999998888888888877644  466777777777777777


Q ss_pred             CCCCCChHHHH
Q 038516          514 HGLRPDEITFL  524 (708)
Q Consensus       514 ~g~~p~~~~~~  524 (708)
                      .| .|....|.
T Consensus        98 sg-~p~~q~Fa  107 (116)
T 2p58_C           98 SQ-DPRIQTFV  107 (116)
T ss_dssp             CC-CHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            65 55444443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=86.44  E-value=4.1  Score=40.30  Aligned_cols=70  Identities=17%  Similarity=0.147  Sum_probs=53.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-----CCCcChHHHH
Q 038516          488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEH-----SLIPGHKHYS  559 (708)
Q Consensus       488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~~p~~~~~~  559 (708)
                      ...++..+...|++++|+..++.+...  .| +...+..++.++...|+..+|++.|+.+.+.     |+.|+..+-.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            344566777888888888888888775  44 6778888888889999999998888876542     8888766543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=86.26  E-value=4.5  Score=30.03  Aligned_cols=79  Identities=10%  Similarity=0.019  Sum_probs=59.9

Q ss_pred             cchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHH
Q 038516          129 EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMV  208 (708)
Q Consensus       129 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  208 (708)
                      ...++|..+-+++...+.  ...+--.-+..+...|++++|..+.+....||...|-+|-.  .+.|-.+.+..-+.++.
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   95 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG   95 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            356677777777777664  44444455566788999999999999999999999988765  36788888887777777


Q ss_pred             hCC
Q 038516          209 GSG  211 (708)
Q Consensus       209 ~~g  211 (708)
                      ..|
T Consensus        96 ~sg   98 (115)
T 2uwj_G           96 GSS   98 (115)
T ss_dssp             TCS
T ss_pred             hCC
Confidence            765

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.04  E-value=5.5  Score=46.00  Aligned_cols=142  Identities=10%  Similarity=-0.022  Sum_probs=78.3

Q ss_pred             HHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC----C-----------------
Q 038516          425 ALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH----P-----------------  483 (708)
Q Consensus       425 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-----------------  483 (708)
                      ++..+...+..+.+.++...     .+.++...-.+..+|..+|++++|...|.+...    .                 
T Consensus       818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            44445555555555443322     123333333456667778888888888876620    0                 


Q ss_pred             -----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh--H--HHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC
Q 038516          484 -----DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE--I--TFLSLLSACSHSGLVERGKILWNQMKEHSLIPG  554 (708)
Q Consensus       484 -----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~  554 (708)
                           -..-|..++..+.+.|.++.++++-+..++..-.-+.  .  .|..++.++...|++++|-..+-.+.....  -
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r  970 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--K  970 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--C
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--H
Confidence                 0112455666666777777777776666654211111  1  355666677777777777666666554322  2


Q ss_pred             hHHHHHHHHHHHhcCCHHH
Q 038516          555 HKHYSCMVSLLSRAGLLDE  573 (708)
Q Consensus       555 ~~~~~~l~~~~~~~g~~~~  573 (708)
                      ...+..|+..++..|..++
T Consensus       971 ~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          971 KSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             HHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHHHHhCCChhh
Confidence            4455666666665555443

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=84.81  E-value=4.8  Score=29.93  Aligned_cols=79  Identities=16%  Similarity=0.066  Sum_probs=58.4

Q ss_pred             cchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHH
Q 038516          129 EDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMV  208 (708)
Q Consensus       129 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~  208 (708)
                      ...++|..+-+++...+.  ...+--.-+..+...|++++|..+.+....||...|-+|-..  +.|-.+++..-+.++.
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~la   96 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRLA   96 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHHH
Confidence            356677777777777664  444444555667889999999999999999999999887654  5577777777777776


Q ss_pred             hCC
Q 038516          209 GSG  211 (708)
Q Consensus       209 ~~g  211 (708)
                      ..|
T Consensus        97 ~sg   99 (116)
T 2p58_C           97 RSQ   99 (116)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            655

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=84.72  E-value=28  Score=33.11  Aligned_cols=183  Identities=14%  Similarity=0.106  Sum_probs=110.1

Q ss_pred             HHHHhccCCh---HHHHHHHHHHHHhcCCCCCCCCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhC
Q 038516           16 IQICASITSL---KRARQIHALVLTTNHIPINAQSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRD   92 (708)
Q Consensus        16 ~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~   92 (708)
                      ++.....|++   .+|.+++.                   ++..=|.+.+++++|++++-.          . ...+.+.
T Consensus        19 l~~~I~~G~y~~~YEAHQ~~R-------------------Ti~~Ry~~~k~y~eAidLL~~----------G-A~~ll~~   68 (336)
T 3lpz_A           19 LQRRIAEGQPEEQYEAAQETR-------------------LVAARYSKQGNWAAAVDILAS----------V-SQTLLRS   68 (336)
T ss_dssp             HHHHHHHCCHHHHHHHHHHHH-------------------HHHHHHHHTTCHHHHHHHHHH----------H-HHHHHHT
T ss_pred             HHHHHhCCCCccccHHHHHHH-------------------HHHHHHHhhcCHHHHHHHHHH----------H-HHHHHHC
Confidence            4556677888   66666544                   444557889999999998632          1 1234445


Q ss_pred             CCChHHHHH----HHHHHHHcCCCCCcchHHHHHHHhccccch-----HHHHHHHHHHHHhC--CCCchhHHhHHHHHhH
Q 038516           93 HDHAHLTFR----LIDQMEFECLRPNGLTFTSLAQAVSLLEDQ-----LMGSLLHAQVIKYG--SSEDTCVQTSLLGMYS  161 (708)
Q Consensus        93 ~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~g--~~~~~~~~~~li~~~~  161 (708)
                      |. ...+-+    +++-..+.++++|......++..+.....-     .-..+...|-.+.|  ..-|+.....+...|.
T Consensus        69 ~Q-~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~  147 (336)
T 3lpz_A           69 GQ-GGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYV  147 (336)
T ss_dssp             TC-HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHH
T ss_pred             CC-cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH
Confidence            55 444433    445566778888888888888777765531     12233344444445  3457888889999999


Q ss_pred             hCCChhHHHHHhccCCCCCcccHHHHHHHHhcCCChhHHHHHHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHHHH
Q 038516          162 NCGDFESAKRIFGLIGDKDAVAWNSIILGNFKNDKMKEGLSLFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIHAR  241 (708)
Q Consensus       162 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  241 (708)
                      +.+++.+|...|-.-..++...+..++..+...+...++--++               ...+-.|...+++..|..+++.
T Consensus       148 ~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~e~dlfi---------------aRaVL~yL~l~n~~~A~~~~~~  212 (336)
T 3lpz_A          148 EEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESHTAPLYC---------------ARAVLPYLLVANVRAANTAYRI  212 (336)
T ss_dssp             HTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGGGHHHHH---------------HHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCccHHHHH---------------HHHHHHHHHhCCHHHHHHHHHH
Confidence            9999999998874322223345554444444333322221111               1122234456788888887776


Q ss_pred             HHH
Q 038516          242 VII  244 (708)
Q Consensus       242 ~~~  244 (708)
                      ..+
T Consensus       213 f~~  215 (336)
T 3lpz_A          213 FTS  215 (336)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.31  E-value=35  Score=32.44  Aligned_cols=165  Identities=13%  Similarity=0.053  Sum_probs=98.6

Q ss_pred             HHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHH----HHHHHCCCCCChHHHHHHHHHHhcc
Q 038516          458 GSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVF----EVILEHGLRPDEITFLSLLSACSHS  533 (708)
Q Consensus       458 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~~~~~ll~~~~~~  533 (708)
                      .++..=|.+.+++++|++++-.           -...+.+.|+...|.++.    +-..+.++++|.....-++..+...
T Consensus        39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~  107 (336)
T 3lpz_A           39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF  107 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence            3455557788888888887643           234456667766655544    4455567788887777777766554


Q ss_pred             CcHH-HHHHHHHHhhH----CC--CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHH
Q 038516          534 GLVE-RGKILWNQMKE----HS--LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRM  606 (708)
Q Consensus       534 ~~~~-~a~~~~~~~~~----~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  606 (708)
                      ..-+ .=..+.+++++    .|  ..-++.....++..|.+.|++.+|+.-+= .... +++..+..++.-+...+.   
T Consensus       108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~-~s~~~~a~mL~ew~~~~~---  182 (336)
T 3lpz_A          108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTK-ESPEVLARMEYEWYKQDE---  182 (336)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCT-THHHHHHHHHHHHHHTSC---
T ss_pred             CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCC-chHHHHHHHHHHHHHhcC---
Confidence            4211 11223333322    12  22356667778899999999999998873 2222 344666666655544432   


Q ss_pred             HHHHHHHHHhcCCCCcchHHHH-HHHHHhcCCchHHHHHHHHHhc
Q 038516          607 VIQAAEQVLRLDPEDGTTHILL-SNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       607 a~~~~~~~~~~~p~~~~~~~~l-~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                                  |.....+... +--|...|+...|..+++...+
T Consensus       183 ------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          183 ------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             ------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence                        2223333322 3346778999999988777654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=81.54  E-value=1.7  Score=39.64  Aligned_cols=60  Identities=18%  Similarity=0.115  Sum_probs=39.3

Q ss_pred             HHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc
Q 038516          563 SLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG  622 (708)
Q Consensus       563 ~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  622 (708)
                      ..+.+.|.+++|++.+..- ...|.|...-..+...++-.|++++|..-++.+.+++|+..
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~   65 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL   65 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence            3455677777777665443 44434566666666677777777777777777777777643

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.54  E-value=47  Score=33.38  Aligned_cols=183  Identities=11%  Similarity=0.058  Sum_probs=107.5

Q ss_pred             CChHHHHHHHHHHhH-----CCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHH----HhhHhcC
Q 038516          398 GDGECAIKLFCKMCR-----EGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLV----DMYAKNG  468 (708)
Q Consensus       398 ~~~~~A~~~~~~m~~-----~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~g  468 (708)
                      |++.+|++.+..+.+     ............++..|...++++...+.+..+.+..-.. ......++    .......
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~ql-k~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQL-KLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTS-HHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhcCC
Confidence            455566655544432     1233344556666777777777777666655554322111 11112222    2222222


Q ss_pred             C--HHHHHHHHhhCC---CC-------ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCCh-----HHHHHHHHHHh
Q 038516          469 D--LRAAESIFSQVL---HP-------DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDE-----ITFLSLLSACS  531 (708)
Q Consensus       469 ~--~~~A~~~~~~~~---~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-----~~~~~ll~~~~  531 (708)
                      .  .+.-..+.+.+.   ..       .......|...|...|++.+|..++.++...-...+.     ..+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            2  222223333221   10       1233456788899999999999999998753222221     34566677899


Q ss_pred             ccCcHHHHHHHHHHhhHC----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhC
Q 038516          532 HSGLVERGKILWNQMKEH----SLIPG--HKHYSCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       532 ~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      ..+++.+|..++.++...    ...|+  ...+..++..+...++|.+|-..|.++
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            999999999999987532    22232  345777888889999999998887665

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=81.35  E-value=7.3  Score=29.15  Aligned_cols=61  Identities=16%  Similarity=0.186  Sum_probs=38.3

Q ss_pred             hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHH
Q 038516          501 AEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMV  562 (708)
Q Consensus       501 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~  562 (708)
                      .-+..+-++.+....+-|+.......+.+|.+.+++..|.++|+.++.+ ..+....|..++
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l   86 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI   86 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence            3345556666666667777777777777777777777777777777654 112233455444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=80.23  E-value=12  Score=40.41  Aligned_cols=29  Identities=17%  Similarity=0.111  Sum_probs=24.0

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          624 THILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       624 ~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      -|..||.+..+.+.++||.+.|+......
T Consensus       615 EWEiLGlla~RL~h~~EA~~a~~~~l~~R  643 (754)
T 4gns_B          615 EWELLGLIMLRTWHWEDAVACLRTSIVAR  643 (754)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhc
Confidence            38899999999999999999888876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	708
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	8e-04
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	0.001

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 8e-04
 Identities = 21/184 (11%), Positives = 49/184 (26%), Gaps = 12/184 (6%)

Query: 460 LVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGL 516
           L ++  +      A + + + L            L   Y   G+ + A   +   +E  L
Sbjct: 209 LGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--L 266

Query: 517 RPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAEN 576
           +P        L+                              + + ++    G ++EA  
Sbjct: 267 QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVR 326

Query: 577 L----IAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLY 632
           L    +   P           L S    +   +  +   ++ +R+ P     +  + N  
Sbjct: 327 LYRKALEVFPEF---AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTL 383

Query: 633 AATG 636
               
Sbjct: 384 KEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 8/188 (4%)

Query: 457 CGSLVDMYAKNGDLRAAESIFSQVL--HPD-LKCWNALLGGYSHYGMAEEAFMVFEVILE 513
             +L  ++   G++  A   F + +   P+ L  +  L        + + A   +   L 
Sbjct: 172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231

Query: 514 HGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGH-KHYSCMVSLLSRAGLLD 572
                  +   +L       GL++     + +  E  L P     Y  + + L   G + 
Sbjct: 232 LSPNHAVV-HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVA 288

Query: 573 EAENLIAESPYSEIRIELWRTLLSTCVAKR-NSRMVIQAAEQVLRLDPEDGTTHILLSNL 631
           EAE+    +             L+    ++ N    ++   + L + PE    H  L+++
Sbjct: 289 EAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASV 348

Query: 632 YAATGRWD 639
               G+  
Sbjct: 349 LQQQGKLQ 356

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	708
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.9
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.14
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.1
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.09
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.03
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.02
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.01
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.95
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.93
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.93
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.87
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.79
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.78
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.72
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.7
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.65
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.63
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.62
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.62
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.61
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.61
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.56
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.53
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.52
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.51
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.49
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.41
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.41
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.31
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.23
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.22
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.16
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.05
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.97
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.96
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.93
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.93
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.91
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.89
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.83
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.82
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.77
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.75
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.65
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.28
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.27
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.24
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.06
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.95
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.7
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.21
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.62
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.54
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.7
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.96
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.63
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	80.52

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=6.3e-21  Score=193.22  Aligned_cols=376  Identities=11%  Similarity=0.037  Sum_probs=269.3

Q ss_pred             HHHHHhccCChhHHHHHHHHHHHhCCCCChhhHHHHHHhcccCCChHHHHHHHhccCC---CChhHHHHHHHHHHcCCCc
Q 038516          222 LLNACSRMGNFVCGKVIHARVIISNTQVDLPLENALLDMYSKCSDTQTAFSVFTRIEN---PDLVSWNSMIAGYMENGNG  298 (708)
Q Consensus       222 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~g~~  298 (708)
                      +...+.+.|++++|.++++++++.. +-+...+..+..+|.+.|++++|...|++..+   .+..+|..+..+|...|++
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccc
Confidence            3445667788888888888887764 33566777777777777888888877777654   3456677777777777777


Q ss_pred             hHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhh
Q 038516          299 EKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFML  378 (708)
Q Consensus       299 ~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~  378 (708)
                      ++|+..+......  .+.+................................ .                           
T Consensus        84 ~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------------------------  133 (388)
T d1w3ba_          84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-D---------------------------  133 (388)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-T---------------------------
T ss_pred             ccccccccccccc--cccccccccccccccccccccccccccccccccccc-c---------------------------
Confidence            7777777777765  233333333333333333333333333322222221 1                           


Q ss_pred             cCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHH
Q 038516          379 IAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCG  458 (708)
Q Consensus       379 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  458 (708)
                          ...............+....+...+....... +-+...+..+...+...|.++.|...+....+.. +.+...+.
T Consensus       134 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~  207 (388)
T d1w3ba_         134 ----LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYI  207 (388)
T ss_dssp             ----CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             ----cccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHH
Confidence                11122223333444555566666665555432 2234455556666777888888888887776654 34566778


Q ss_pred             HHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccC
Q 038516          459 SLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSG  534 (708)
Q Consensus       459 ~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~  534 (708)
                      .+...+...|++++|...++...   ..+...+..+...+.+.|++++|+..|+++.+.  .|+ ...+..+...+...|
T Consensus       208 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~  285 (388)
T d1w3ba_         208 NLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKG  285 (388)
T ss_dssp             HHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHS
T ss_pred             HHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence            88889999999999999998764   456778888999999999999999999999984  564 567888888999999


Q ss_pred             cHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038516          535 LVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQ  613 (708)
Q Consensus       535 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  613 (708)
                      ++++|.+.++..... .+.+...+..++..+...|++++|.+.++++ ...|.+...|..++..+...|++++|...+++
T Consensus       286 ~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~  364 (388)
T d1w3ba_         286 SVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE  364 (388)
T ss_dssp             CHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred             CHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            999999999988773 3345677888999999999999999999987 33434678899999999999999999999999


Q ss_pred             HHhcCCCCcchHHHHHHHHHhcCC
Q 038516          614 VLRLDPEDGTTHILLSNLYAATGR  637 (708)
Q Consensus       614 ~~~~~p~~~~~~~~l~~~~~~~g~  637 (708)
                      +++++|+++.+|..||.+|.+.|+
T Consensus       365 al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         365 AIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999998886

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=8.6e-21  Score=192.17  Aligned_cols=355  Identities=14%  Similarity=0.093  Sum_probs=264.6

Q ss_pred             HHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccchHHHHHHHHHHCCCCchhHHhHHHHHHHhcCC
Q 038516          289 IAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAYGKPLHALVIKTGYDSSVFVGTTLLNMYFKNGD  368 (708)
Q Consensus       289 i~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~  368 (708)
                      ...+.+.|++++|.+.++++.+.  .+-+...+..+...+...|++++|...++.+++.. |.+..++..+..+|.+.|+
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcc
Confidence            34455666677777777666654  23345556666666666677777777776666654 4455667777777777777


Q ss_pred             ChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHH
Q 038516          369 AESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQA  445 (708)
Q Consensus       369 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~  445 (708)
                      +++|...+......   +...+..........+....+............. ...............+....+...+...
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHh
Confidence            77777777665432   2222233333344444555555555444443322 3333334445556667777777777666


Q ss_pred             HHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH
Q 038516          446 EKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT  522 (708)
Q Consensus       446 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  522 (708)
                      .... +.+...+..+...+...|++++|...++...   +.+...|..+...+...|++++|+..+++....+ ..+...
T Consensus       162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  239 (388)
T d1w3ba_         162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV  239 (388)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred             hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence            6554 4456777888899999999999999998774   3467789999999999999999999999999863 345667


Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA  600 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~  600 (708)
                      +..+...+.+.|++++|...|+++.+  +.|+ ...+..++..+...|++++|.+.++.+ ...+.+...+..+...+..
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence            77888899999999999999999987  4454 678889999999999999999999887 3333578889999999999


Q ss_pred             cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          601 KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       601 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      .|++++|+..++++++++|+++.++..+|.+|...|++++|+..++++.+.
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  368 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998764

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=4.5e-14  Score=138.10  Aligned_cols=224  Identities=16%  Similarity=0.084  Sum_probs=160.3

Q ss_pred             hHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCC
Q 038516          390 MIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGD  469 (708)
Q Consensus       390 li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  469 (708)
                      ....+.+.|++++|+..|+++++..  |+                                  +...+..+..+|...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~--P~----------------------------------~~~a~~~lg~~~~~~~~   68 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD--PK----------------------------------HMEAWQYLGTTQAENEQ   68 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC--TT----------------------------------CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CC----------------------------------CHHHHHHHHHHHHHcCC
Confidence            3445666677777777777666542  22                                  33444455555556666


Q ss_pred             HHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHH----------------HHHHHHHH
Q 038516          470 LRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEIT----------------FLSLLSAC  530 (708)
Q Consensus       470 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~----------------~~~ll~~~  530 (708)
                      +++|...|.+..   +.+...|..+...|...|++++|.+.++++...  .|+...                ....+..+
T Consensus        69 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (323)
T d1fcha_          69 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRY--TPAYAHLVTPAEEGAGGAGLGPSKRILGSL  146 (323)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--STTTGGGCC---------------CTTHHH
T ss_pred             hHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHh--ccchHHHHHhhhhhhhhcccccchhhHHHH
Confidence            666666665543   234556666666667777777777777766653  332111                11122233


Q ss_pred             hccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038516          531 SHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVI  608 (708)
Q Consensus       531 ~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~  608 (708)
                      ...+.+.+|.+.+.+..+. ...++...+..++..+...|++++|...++++ ...+.+...|..++..+...|++++|.
T Consensus       147 ~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~  226 (323)
T d1fcha_         147 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAV  226 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHH
Confidence            4456778888888887764 23345677888999999999999999999987 333346888999999999999999999


Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          609 QAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       609 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ..++++++++|+++.+|..+|.+|...|++++|++.+++..+.
T Consensus       227 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         227 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999988763

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.9e-13  Score=129.99  Aligned_cols=266  Identities=12%  Similarity=0.032  Sum_probs=188.5

Q ss_pred             HHHHHHHhcCCChhHHHHHhhcCCC---CEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCccc
Q 038516          358 TLLNMYFKNGDAESPQKVFMLIAEK---DIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAI  434 (708)
Q Consensus       358 ~li~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~  434 (708)
                      .....+.+.|++++|...|+.+.+.   +..+|..+..+|...|++++|...|++..+.. +-+...+..+...+...|+
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence            4567789999999999999987653   56688889999999999999999999988753 2234556666666777777


Q ss_pred             HHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC
Q 038516          435 LKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEH  514 (708)
Q Consensus       435 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  514 (708)
                      +++|.+.+.......... ...........                ...+.......+..+...+.+.+|...+.+..+.
T Consensus       103 ~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~  165 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAY-AHLVTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRL  165 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTT-GGGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccch-HHHHHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence            777777777665533111 00000000000                0001111111223344556778899999888874


Q ss_pred             CC-CCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHH
Q 038516          515 GL-RPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELW  591 (708)
Q Consensus       515 g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~  591 (708)
                      .. .++...+..+...+...|++++|+..|++...  ..|+ ...|..++..|...|++++|.+.++++ ...|.++..|
T Consensus       166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~  243 (323)
T d1fcha_         166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS--VRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR  243 (323)
T ss_dssp             STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             hhcccccccchhhHHHHHHHHHHhhhhcccccccc--cccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence            22 22456677778889999999999999999887  3444 677888999999999999999999987 3333468889


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----------HHHHHHHHHhcCCchHHHH
Q 038516          592 RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT-----------HILLSNLYAATGRWDCVAK  643 (708)
Q Consensus       592 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~eA~~  643 (708)
                      ..++.+|...|++++|+..++++++++|++..+           |..+..++...|+.+.+..
T Consensus       244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999999999999999999999999999988764           4557777777888775543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.14  E-value=4e-09  Score=103.63  Aligned_cols=258  Identities=14%  Similarity=0.010  Sum_probs=167.3

Q ss_pred             HHhcCCChHHHHHHHHHHhHCCCccC----HHHHHHHHHHHhCcccHHHHHHHHHHHHHhC--CCC---chhHHHHHHHh
Q 038516          393 GHSRMGDGECAIKLFCKMCREGLKCD----NFALSGALSACADLAILKQGEMIHSQAEKTG--HGV---EMSVCGSLVDM  463 (708)
Q Consensus       393 ~~~~~~~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~---~~~~~~~l~~~  463 (708)
                      .+...|++++|+.++++..+.....+    ...+..+...+...|++++|...+....+..  ...   ....+..+...
T Consensus        21 ~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  100 (366)
T d1hz4a_          21 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI  100 (366)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence            34455666666666665554321111    1233444455566666666666666554321  111   12334455666


Q ss_pred             hHhcCCHHHHHHHHhhCC-------CC----ChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC----hHHHHHHHH
Q 038516          464 YAKNGDLRAAESIFSQVL-------HP----DLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD----EITFLSLLS  528 (708)
Q Consensus       464 ~~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~ll~  528 (708)
                      +...|++..|...+....       .+    ....+..+...+...|+++.+...+.+........+    ...+.....
T Consensus       101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  180 (366)
T d1hz4a_         101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ  180 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            777888888877776542       11    123455667788889999999999988886422211    233455555


Q ss_pred             HHhccCcHHHHHHHHHHhhHC----CCCcC--hHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-----CHHHHHHHHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEH----SLIPG--HKHYSCMVSLLSRAGLLDEAENLIAESPYSEI-----RIELWRTLLST  597 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~l~~~  597 (708)
                      .+...++...+...+......    +..+.  ...+..++..+...|++++|...+++.....+     ....+..+...
T Consensus       181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~  260 (366)
T d1hz4a_         181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA  260 (366)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            677788888888888776543    11111  23456667788899999999999988732211     23456667788


Q ss_pred             HHhcCCHHHHHHHHHHHHh------cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          598 CVAKRNSRMVIQAAEQVLR------LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       598 ~~~~~~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      +...|++++|...+++++.      ..|....++..++.+|...|++++|.+.+++..+
T Consensus       261 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         261 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            8899999999999998874      3455667788999999999999999999987754

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=8.4e-10  Score=105.89  Aligned_cols=188  Identities=7%  Similarity=0.058  Sum_probs=104.6

Q ss_pred             HHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcC-ChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhc
Q 038516          458 GSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYG-MAEEAFMVFEVILEHGLRP-DEITFLSLLSACSH  532 (708)
Q Consensus       458 ~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~  532 (708)
                      +.+...+.+.+.+++|++.++.++   +.+...|+....++...| ++++|+..+++.++.  .| +..+|..+...+..
T Consensus        47 ~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~--~p~~~~a~~~~~~~~~~  124 (315)
T d2h6fa1          47 DYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNYQVWHHRRVLVEW  124 (315)
T ss_dssp             HHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--HHhhhhHHHHHhHHHHh
Confidence            334444555556666666666553   234455565555555554 356666666666653  34 34455555556666


Q ss_pred             cCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCC------H
Q 038516          533 SGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRN------S  604 (708)
Q Consensus       533 ~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~------~  604 (708)
                      .|++++|++.++++.+  +.|+ ...|..++..+...|++++|++.++++ ...+.+...|..+...+...+.      +
T Consensus       125 l~~~~eAl~~~~kal~--~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~~~~  202 (315)
T d2h6fa1         125 LRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVL  202 (315)
T ss_dssp             HTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred             hccHHHHHHHHhhhhh--hhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchhhhh
Confidence            6666666666666665  3333 555666666666666666666666665 2222345555555544444332      4


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          605 RMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       605 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      ++|...+.++++++|++..+|..++.++...| .+++.+.++...+
T Consensus       203 ~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~  247 (315)
T d2h6fa1         203 EREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLD  247 (315)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHH
T ss_pred             HHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHH
Confidence            56666666666666666666666666554433 4555555555443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.09  E-value=1.2e-09  Score=102.16  Aligned_cols=193  Identities=15%  Similarity=0.049  Sum_probs=119.4

Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHh
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACS  531 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~  531 (708)
                      ++..+..+|.+.|++++|+..|++.+   +.++.+|+.+..+|.+.|++++|+..|+++.+.  .|+ ..++..+..++.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHH
Confidence            44455667777888888888887764   346677888888888888888888888888874  454 455667777777


Q ss_pred             ccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC---CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516          532 HSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES---PYSEIRIELWRTLLSTCVAKRNSRMV  607 (708)
Q Consensus       532 ~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a  607 (708)
                      ..|++++|...|+...+.  .|+ ......+...+.+.+..+.+..+....   ....+........+......+..+.+
T Consensus       117 ~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL  194 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            888888888888887763  332 333333444445555444444333332   22211111111111111122334455


Q ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          608 IQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       608 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      ...+.......|+...+|..||.+|...|++++|.+.+++..+..
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  239 (259)
T d1xnfa_         195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  239 (259)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            555555555667777778888888888888888888888877643

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=1.2e-08  Score=100.02  Aligned_cols=257  Identities=9%  Similarity=-0.063  Sum_probs=161.7

Q ss_pred             hhhHHHHhcCCChHHHHHHHHHHhHC----CCccC-HHHHHHHHHHHhCcccHHHHHHHHHHHHH----hCCCC---chh
Q 038516          388 TEMIIGHSRMGDGECAIKLFCKMCRE----GLKCD-NFALSGALSACADLAILKQGEMIHSQAEK----TGHGV---EMS  455 (708)
Q Consensus       388 ~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~---~~~  455 (708)
                      ..+...|...|++++|...|++..+.    +..+. ...+..+...+...|++..+...+.....    .....   ...
T Consensus        55 ~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~  134 (366)
T d1hz4a_          55 SVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF  134 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHH
Confidence            33444555555555555555554331    11111 12334444555666777777666655432    11111   123


Q ss_pred             HHHHHHHhhHhcCCHHHHHHHHhhCC--------CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCC--CCCC----hH
Q 038516          456 VCGSLVDMYAKNGDLRAAESIFSQVL--------HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHG--LRPD----EI  521 (708)
Q Consensus       456 ~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~  521 (708)
                      .+..+...+...|+++.+...+....        ......+..+...+...++...+...+.+.....  ....    ..
T Consensus       135 ~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~  214 (366)
T d1hz4a_         135 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN  214 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH
T ss_pred             HHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHH
Confidence            44556677888899988888887652        1223455666777888899999988888776521  1111    12


Q ss_pred             HHHHHHHHHhccCcHHHHHHHHHHhhHCCCC---cChHHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCCHHHH
Q 038516          522 TFLSLLSACSHSGLVERGKILWNQMKEHSLI---PGHKHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIRIELW  591 (708)
Q Consensus       522 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~  591 (708)
                      .+..+...+...|++++|...++........   .....+..++..+...|++++|...++++       ...+.....+
T Consensus       215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence            3445555788889999999999988764211   12345667888999999999999998876       2221234567


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCc---------chHHHHHHHHHhcCCchHHHHH
Q 038516          592 RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDG---------TTHILLSNLYAATGRWDCVAKM  644 (708)
Q Consensus       592 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---------~~~~~l~~~~~~~g~~~eA~~~  644 (708)
                      ..+...+...|+.++|...+++++++.+...         ..+..+...+...++.+++.+-
T Consensus       295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~~  356 (366)
T d1hz4a_         295 LLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQH  356 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence            7888889999999999999999998754322         1233444556667777777643

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=6.4e-10  Score=108.39  Aligned_cols=232  Identities=6%  Similarity=-0.124  Sum_probs=161.0

Q ss_pred             cCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHH
Q 038516          396 RMGDGECAIKLFCKMCREGLKCDNFALSGALSACADL--AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAA  473 (708)
Q Consensus       396 ~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  473 (708)
                      ..|.+++|+..++...+.. +-+...+.....++...  ++++++...+..+.+.........+......+...|..++|
T Consensus        85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A  163 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE  163 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence            3445667777777766542 22333444444444333  45777777777777664332222333455677788999999


Q ss_pred             HHHHhhCCC---CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCC
Q 038516          474 ESIFSQVLH---PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHS  550 (708)
Q Consensus       474 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  550 (708)
                      +..++.++.   .+...|+.+...+.+.|++++|...+++..+.  .|+..   .+...+...+..+++...+.......
T Consensus       164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~~  238 (334)
T d1dcea1         164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLGR  238 (334)
T ss_dssp             HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHhC
Confidence            999998863   46788999999999999998887666655542  22221   22233445566677777777776632


Q ss_pred             CCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516          551 LIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLS  629 (708)
Q Consensus       551 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  629 (708)
                       .++...+..++..+...|++++|...+.+.....| +...|..++..+...|+.++|...++++++++|++...|..|+
T Consensus       239 -~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~  317 (334)
T d1dcea1         239 -AEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLR  317 (334)
T ss_dssp             -CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             -cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHH
Confidence             23344555677888889999999999988744434 4677888889999999999999999999999999999999888


Q ss_pred             HHHHh
Q 038516          630 NLYAA  634 (708)
Q Consensus       630 ~~~~~  634 (708)
                      ..+.-
T Consensus       318 ~~~~~  322 (334)
T d1dcea1         318 SKFLL  322 (334)
T ss_dssp             HHHHH
T ss_pred             HHHhH
Confidence            77664

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=1.6e-09  Score=103.95  Aligned_cols=164  Identities=10%  Similarity=0.004  Sum_probs=140.0

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChH-HHHHHHHHHhccC-cHHHHHHHHHHhhHCCCCcC-hHHHHHH
Q 038516          485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEI-TFLSLLSACSHSG-LVERGKILWNQMKEHSLIPG-HKHYSCM  561 (708)
Q Consensus       485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~p~-~~~~~~l  561 (708)
                      ...|+.+...+.+.+.+++|+.+++++++  +.|+.. .|+....++...| ++++|+..++...+  +.|+ ..+|..+
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~--lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~--~~p~~~~a~~~~  118 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIE--LNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIE--EQPKNYQVWHHR  118 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH--HCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHH--HHHhhhhHHHHH
Confidence            34667777888899999999999999999  477654 5777777777766 59999999999987  4554 7789999


Q ss_pred             HHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC---
Q 038516          562 VSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR---  637 (708)
Q Consensus       562 ~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~---  637 (708)
                      +..+.+.|++++|++.++++ ...+.+...|..++..+...|++++|...++++++++|++..+|..++.++...|+   
T Consensus       119 ~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         119 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             hHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccch
Confidence            99999999999999999998 44435799999999999999999999999999999999999999999999998887   


Q ss_pred             ---chHHHHHHHHHhcCC
Q 038516          638 ---WDCVAKMRRKMKGSM  652 (708)
Q Consensus       638 ---~~eA~~~~~~~~~~~  652 (708)
                         +++|.+.+.++.+..
T Consensus       199 ~~~~~~ai~~~~~al~~~  216 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLV  216 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHS
T ss_pred             hhhhHHhHHHHHHHHHhC
Confidence               467888887776543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.01  E-value=1.8e-09  Score=100.82  Aligned_cols=224  Identities=12%  Similarity=-0.036  Sum_probs=151.1

Q ss_pred             CCChHHHHHHHHHHhHCCC-ccC--HHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHH
Q 038516          397 MGDGECAIKLFCKMCREGL-KCD--NFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAA  473 (708)
Q Consensus       397 ~~~~~~A~~~~~~m~~~g~-~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  473 (708)
                      ..+.+.++.-+++...... .++  ..++..+-..+...|++++|...++...+.. +.++.++..+..+|.+.|++++|
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A   90 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA   90 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHh
Confidence            3445666667777665422 221  2355566677888999999999999888765 45778899999999999999999


Q ss_pred             HHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHHHHHHHHhhHC
Q 038516          474 ESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERGKILWNQMKEH  549 (708)
Q Consensus       474 ~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  549 (708)
                      ++.|+++.   +.+..+|..+..+|...|++++|...|++..+.  .|+ ......+..++.+.+..+.+..+.......
T Consensus        91 ~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (259)
T d1xnfa_          91 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS  168 (259)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred             hhhhhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence            99999885   345778999999999999999999999999985  454 444444444556666666666665655553


Q ss_pred             CCCcChHHHHHHHHHHHhcCC----HHHHHHHHHhCC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch
Q 038516          550 SLIPGHKHYSCMVSLLSRAGL----LDEAENLIAESP-YSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT  624 (708)
Q Consensus       550 ~~~p~~~~~~~l~~~~~~~g~----~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  624 (708)
                      .  +....+. ++..+.....    .+.+...+.... ..+.....|..++..+...|++++|...+++++..+|++...
T Consensus       169 ~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~  245 (259)
T d1xnfa_         169 D--KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE  245 (259)
T ss_dssp             C--CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH
T ss_pred             c--hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHH
Confidence            2  2222222 2222222222    222222221111 110123457778888999999999999999999999998654


Q ss_pred             HH
Q 038516          625 HI  626 (708)
Q Consensus       625 ~~  626 (708)
                      |.
T Consensus       246 ~~  247 (259)
T d1xnfa_         246 HR  247 (259)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=8e-08  Score=91.71  Aligned_cols=189  Identities=11%  Similarity=0.036  Sum_probs=129.2

Q ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCCC--C-C-hHHHHHHHHHHHhcCChHHHHHHH
Q 038516          433 AILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVLH--P-D-LKCWNALLGGYSHYGMAEEAFMVF  508 (708)
Q Consensus       433 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~-~~~~~~li~~~~~~g~~~~A~~~~  508 (708)
                      +..+++..+++...+...+.+...+..++..+.+.|+++.|..+|+.++.  | + ...|...+..+.+.|+.+.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34567777777777654555666777777778888888888888887642  2 2 346778888888888888888888


Q ss_pred             HHHHHCCCCCChHHHHHHHH-HHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC----CC
Q 038516          509 EVILEHGLRPDEITFLSLLS-ACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES----PY  583 (708)
Q Consensus       509 ~~m~~~g~~p~~~~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~  583 (708)
                      +++.+.+ +.+...|..... -+...|+.+.|..+|+.+.+. .+.+...|..+++.+.+.|+.+.|..+|+++    +.
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            8887753 223333333332 234457788888888888763 2223566777788888888888888888776    22


Q ss_pred             CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          584 SE-IRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       584 ~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      .+ ....+|...+..-..+|+.+.+..+++++.++.|+...
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~  276 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence            21 12457777777777788888888888888887776643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=5.8e-09  Score=83.04  Aligned_cols=91  Identities=11%  Similarity=0.064  Sum_probs=81.0

Q ss_pred             HHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038516          561 MVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWD  639 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  639 (708)
                      -+..+.+.|++++|+..|+++ ...|.++..|..++.++...|++++|+..++++++++|+++.+|..+|.+|...|+++
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~   88 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE   88 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence            467788999999999999887 3343578889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcC
Q 038516          640 CVAKMRRKMKGS  651 (708)
Q Consensus       640 eA~~~~~~~~~~  651 (708)
                      +|+..+++..+.
T Consensus        89 ~A~~~~~~a~~~  100 (117)
T d1elwa_          89 EAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.93  E-value=7.8e-08  Score=91.79  Aligned_cols=184  Identities=9%  Similarity=0.044  Sum_probs=144.5

Q ss_pred             cCCHHHHHHHHhhCC----CCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHH
Q 038516          467 NGDLRAAESIFSQVL----HPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKIL  542 (708)
Q Consensus       467 ~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  542 (708)
                      .+..++|..+|++.+    +.+...|...+..+.+.|+++.|..+|+++++.........|..++..+.+.|+++.|.++
T Consensus        77 ~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i  156 (308)
T d2onda1          77 KLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMI  156 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHH
Confidence            345678888888753    3466788889999999999999999999999853222244688888999999999999999


Q ss_pred             HHHhhHCCCCcChHHHHHHHHH-HHhcCCHHHHHHHHHhCCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 038516          543 WNQMKEHSLIPGHKHYSCMVSL-LSRAGLLDEAENLIAESPY-SEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPE  620 (708)
Q Consensus       543 ~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  620 (708)
                      |+++.+.+. .+...|...+.. +...|+.+.|..+++.+.. .+.++..|...+..+...|+.+.|..+|++++...|.
T Consensus       157 ~~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         157 FKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            999987432 234445444443 3446899999999998822 2246889999999999999999999999999998876


Q ss_pred             Ccc----hHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          621 DGT----THILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       621 ~~~----~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++.    .|..........|+.+.+..+.+++.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            543    6777777778889999999999988654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=1.1e-09  Score=106.54  Aligned_cols=244  Identities=7%  Similarity=-0.050  Sum_probs=171.2

Q ss_pred             CChHHHHHHHHHHhHCCCccCHHHH----HHHHHHH-------hCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHh
Q 038516          398 GDGECAIKLFCKMCREGLKCDNFAL----SGALSAC-------ADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAK  466 (708)
Q Consensus       398 ~~~~~A~~~~~~m~~~g~~p~~~t~----~~ll~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  466 (708)
                      +..++|++++++.++.  .|+..+.    ..++...       ...+.++++..+++.+.+.+ +.+...+..+..++..
T Consensus        43 ~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHH
Confidence            3346777777777654  4555432    1222222       23456778888888887765 4455566666555555


Q ss_pred             c--CCHHHHHHHHhhCC---CCChHHHHH-HHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHH
Q 038516          467 N--GDLRAAESIFSQVL---HPDLKCWNA-LLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERG  539 (708)
Q Consensus       467 ~--g~~~~A~~~~~~~~---~~~~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a  539 (708)
                      .  +++++|...+..+.   +++...|.. ....+...|++++|+..++++++.  .| +...|..+...+...|++++|
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCHHHH
Confidence            4  45889999888874   345666554 446777789999999999998885  45 566788888888888888777


Q ss_pred             HHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 038516          540 KILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLD  618 (708)
Q Consensus       540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  618 (708)
                      ...++...+  +.|..   ..+...+...+..+++...+.+. ...++....+..++..+...++.++|...+.++++.+
T Consensus       198 ~~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  272 (334)
T d1dcea1         198 GPQGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN  272 (334)
T ss_dssp             SSCCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            665554443  22221   12334456667777777777665 2232445556666777778899999999999999999


Q ss_pred             CCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          619 PEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       619 p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      |++..++..+|.+|...|++++|.+.++++.+.
T Consensus       273 p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         273 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            999999999999999999999999999998764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.79  E-value=1.3e-08  Score=90.55  Aligned_cols=96  Identities=10%  Similarity=0.095  Sum_probs=46.5

Q ss_pred             cChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 038516          553 PGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNL  631 (708)
Q Consensus       553 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  631 (708)
                      |+...+...+..|.+.|++++|+..|+++ ...|.++.+|..++.+|...|+++.|+..++++++++|+++.+|..+|.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            33333444444455555555555555443 22223344455555555555555555555555555555555555555555


Q ss_pred             HHhcCCchHHHHHHHHH
Q 038516          632 YAATGRWDCVAKMRRKM  648 (708)
Q Consensus       632 ~~~~g~~~eA~~~~~~~  648 (708)
                      |...|++++|...++++
T Consensus        82 ~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          82 QLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHH
Confidence            55555555555555444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.78  E-value=3.6e-08  Score=83.54  Aligned_cols=92  Identities=8%  Similarity=-0.000  Sum_probs=76.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCc
Q 038516          560 CMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRW  638 (708)
Q Consensus       560 ~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  638 (708)
                      ..+..|.+.|++++|+..|+++ ...|.+...|..++.++...|++++|...++++++++|++..+|..+|.+|...|++
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            3456788888888888888887 333346788888888888899999999999999999999988899999999999999


Q ss_pred             hHHHHHHHHHhcC
Q 038516          639 DCVAKMRRKMKGS  651 (708)
Q Consensus       639 ~eA~~~~~~~~~~  651 (708)
                      ++|...+++....
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            9999888887664

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=7.1e-08  Score=76.51  Aligned_cols=105  Identities=12%  Similarity=0.029  Sum_probs=86.7

Q ss_pred             HHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCH
Q 038516          527 LSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNS  604 (708)
Q Consensus       527 l~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~  604 (708)
                      ...+...|++++|+..|++.++  ..|+ ...|..++.+|...|++++|+..++++ ...|.++..|..++.++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence            4456778888888888888876  3453 667888888999999999999988887 33445788899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          605 RMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       605 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      ++|+..++++++++|+++.++..+.++..
T Consensus        88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          88 EEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            99999999999999999998888877643

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.70  E-value=2.5e-08  Score=78.47  Aligned_cols=90  Identities=20%  Similarity=0.120  Sum_probs=81.4

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038516          559 SCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGR  637 (708)
Q Consensus       559 ~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  637 (708)
                      -.++..+.+.|++++|...++++ ...|.++..|..++.++...|++++|+..++++++++|+++.++..|+.+|...|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            34677889999999999999998 33334689999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHH
Q 038516          638 WDCVAKMRRKM  648 (708)
Q Consensus       638 ~~eA~~~~~~~  648 (708)
                      +++|.+.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.65  E-value=2.5e-07  Score=77.37  Aligned_cols=85  Identities=13%  Similarity=0.066  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeE
Q 038516          589 ELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNV  668 (708)
Q Consensus       589 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~  668 (708)
                      .++..++.+|.+.|+++.|+..++++++++|++..+|..+|.+|...|++++|+..|++..+.                 
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l-----------------  130 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL-----------------  130 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----------------
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh-----------------
Confidence            356678888999999999999999999999999999999999999999999999999988763                 


Q ss_pred             EEEEeCCCCCcchHHHHHHHHHHHHHHHhhh
Q 038516          669 HVFSSGDQSHPKIDDAQAELHRLRGNMRKLV  699 (708)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~  699 (708)
                               .|...++...+..+..++++..
T Consensus       131 ---------~P~n~~~~~~l~~~~~kl~~~~  152 (153)
T d2fbna1         131 ---------NPNNLDIRNSYELCVNKLKEAR  152 (153)
T ss_dssp             ---------STTCHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCCCHHHHHHHHHHHHHHHHHC
Confidence                     5777888888888888887754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=3e-07  Score=78.43  Aligned_cols=62  Identities=11%  Similarity=0.037  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++..+..+|.+.|++++|+..++++++++|+++.++..+|.+|...|++++|...++++.+.
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            45667777888999999999999999999999999999999999999999999999988764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.2e-08  Score=77.47  Aligned_cols=103  Identities=10%  Similarity=0.006  Sum_probs=56.9

Q ss_pred             HHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCCCH---HHHHHHHHH
Q 038516          525 SLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGL---LDEAENLIAESPYSEIRI---ELWRTLLST  597 (708)
Q Consensus       525 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~---~~~~~l~~~  597 (708)
                      .++..+...+++++|.+.|++..+  ..| +..++..++.++.+.++   +++|..+++++....|++   .+|..++.+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            455556666666666666666665  223 34555556666655433   334666666653322222   245555666


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516          598 CVAKRNSRMVIQAAEQVLRLDPEDGTTHILLS  629 (708)
Q Consensus       598 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  629 (708)
                      |...|++++|+..++++++++|++..+...+.
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~  113 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELER  113 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence            66666666666666666666666655544443

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.9e-07  Score=78.89  Aligned_cols=116  Identities=13%  Similarity=0.081  Sum_probs=92.6

Q ss_pred             HHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCH
Q 038516          527 LSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNS  604 (708)
Q Consensus       527 l~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~  604 (708)
                      ...|.+.|++++|+..|+++++  +.|+ ...|..++.+|...|++++|...++++ ...+.+...|..++.++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIE--LNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccc--cchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCH
Confidence            4456788888888888888887  3454 667888888899999999999998887 33435678899999999999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHH--HhcCCchHHHHH
Q 038516          605 RMVIQAAEQVLRLDPEDGTTHILLSNLY--AATGRWDCVAKM  644 (708)
Q Consensus       605 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~eA~~~  644 (708)
                      ++|...++++++++|+++.++..+..+.  ...+.+++|...
T Consensus        95 ~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          95 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999888877664  344556666654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=4.1e-07  Score=85.70  Aligned_cols=190  Identities=10%  Similarity=-0.003  Sum_probs=130.4

Q ss_pred             HHHhhHhcCCHHHHHHHHhhCCC-----CC----hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-C----hHHHHH
Q 038516          460 LVDMYAKNGDLRAAESIFSQVLH-----PD----LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-D----EITFLS  525 (708)
Q Consensus       460 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~----~~~~~~  525 (708)
                      ...+|...|++++|.+.|.+...     .+    ..+|..+..+|.+.|++++|++.+++..+.-... +    ..++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            45678888899999988887631     22    3578889999999999999999999877531111 1    234555


Q ss_pred             HHHHHh-ccCcHHHHHHHHHHhhHC----CCCcC-hHHHHHHHHHHHhcCCHHHHHHHHHhC----CCCC---CC-HHHH
Q 038516          526 LLSACS-HSGLVERGKILWNQMKEH----SLIPG-HKHYSCMVSLLSRAGLLDEAENLIAES----PYSE---IR-IELW  591 (708)
Q Consensus       526 ll~~~~-~~~~~~~a~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~~---~~-~~~~  591 (708)
                      +...|. ..|++++|.+.+++..+.    +..+. ..++..++..+...|++++|.+.++++    +..+   .. ...+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            666664 469999999999988653    22222 456788899999999999999999886    1110   01 1234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-----HHHHHHHHHh--cCCchHHHHHHHHHh
Q 038516          592 RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT-----HILLSNLYAA--TGRWDCVAKMRRKMK  649 (708)
Q Consensus       592 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~~--~g~~~eA~~~~~~~~  649 (708)
                      ...+-.+...|+.+.|...++++.+++|..+..     ...|+.++..  .+++++|+..++.+.
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~  267 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            445556677899999999999999999875443     3455556555  356888888886443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=7.8e-07  Score=77.52  Aligned_cols=141  Identities=11%  Similarity=0.027  Sum_probs=101.5

Q ss_pred             HHhhHhcCCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhccCcHHHH
Q 038516          461 VDMYAKNGDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHSGLVERG  539 (708)
Q Consensus       461 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a  539 (708)
                      ...+...|+++.|++.|.++.+++..+|..+..+|...|++++|++.|++.++.  .|+ ...|..+..++.+.|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence            345677899999999999988888889999999999999999999999999984  554 56677788888899999999


Q ss_pred             HHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 038516          540 KILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       540 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  619 (708)
                      ++.|++..... .++...      .+...|.           ........++..+..++...|+++.|.+.+++++++.|
T Consensus        90 ~~~~~kAl~~~-~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~  151 (192)
T d1hh8a_          90 IKDLKEALIQL-RGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS  151 (192)
T ss_dssp             HHHHHHHHHTT-TTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhC-ccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            98888876531 111000      0000000           00001134556677778888888888888888888888


Q ss_pred             CC
Q 038516          620 ED  621 (708)
Q Consensus       620 ~~  621 (708)
                      +.
T Consensus       152 ~~  153 (192)
T d1hh8a_         152 EP  153 (192)
T ss_dssp             SG
T ss_pred             Cc
Confidence            75

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=4e-07  Score=79.41  Aligned_cols=120  Identities=8%  Similarity=-0.004  Sum_probs=93.1

Q ss_pred             HHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038516          529 ACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMV  607 (708)
Q Consensus       529 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a  607 (708)
                      .+...|+++.|++.|+++    .+|+...|..++.+|...|++++|++.|+++ ...+..+..|..++.++...|++++|
T Consensus        14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence            456677888888777654    2356667777888888888888888888887 33334677888888888888999999


Q ss_pred             HHHHHHHHhcCCCCc----------------chHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          608 IQAAEQVLRLDPEDG----------------TTHILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       608 ~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      ...+++++...|.+.                .++..++.+|...|++++|.+.+++..+..
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            988888887766543                236688999999999999999999887643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=1.4e-07  Score=83.69  Aligned_cols=95  Identities=12%  Similarity=-0.055  Sum_probs=55.4

Q ss_pred             CChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHH
Q 038516          483 PDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSC  560 (708)
Q Consensus       483 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~  560 (708)
                      |+...+......|.+.|++++|+..|+++++.  .| +...|..+..+|.+.|++++|+..|++.++  +.|+ ...|..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~   77 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF   77 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHH
Confidence            44445555566666666666666666666663  33 344455555566666666666666666654  4443 445555


Q ss_pred             HHHHHHhcCCHHHHHHHHHhC
Q 038516          561 MVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       561 l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      ++.+|.+.|++++|+..++++
T Consensus        78 lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            666666666666666665554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.53  E-value=2.6e-07  Score=78.92  Aligned_cols=88  Identities=11%  Similarity=0.135  Sum_probs=75.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecC
Q 038516          587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKN  666 (708)
Q Consensus       587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~  666 (708)
                      ....|..+..++.+.|++++|+..++++++++|+++.+|..+|.+|...|++++|++.++++.+.               
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l---------------  140 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI---------------  140 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh---------------
Confidence            45567778888999999999999999999999999999999999999999999999999988763               


Q ss_pred             eEEEEEeCCCCCcchHHHHHHHHHHHHHHHhhhh
Q 038516          667 NVHVFSSGDQSHPKIDDAQAELHRLRGNMRKLVT  700 (708)
Q Consensus       667 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  700 (708)
                                 .|...+++..+..+..++++..+
T Consensus       141 -----------~p~n~~~~~~l~~~~~~l~~~~~  163 (169)
T d1ihga1         141 -----------APEDKAIQAELLKVKQKIKAQKD  163 (169)
T ss_dssp             -----------CTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             -----------CCCCHHHHHHHHHHHHHHHHHHH
Confidence                       46667778888887777776643

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.8e-07  Score=73.04  Aligned_cols=90  Identities=9%  Similarity=-0.025  Sum_probs=40.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccC---cHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHH
Q 038516          491 LLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSG---LVERGKILWNQMKEHSLIPG-HKHYSCMVSLLS  566 (708)
Q Consensus       491 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~  566 (708)
                      ++..+...+++++|.+.|++.+..+ +.+..++..+..++.+.+   ++++|+++|+++...+..|+ ...+..|+.+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4444445555555555555555532 223344444444444322   23345555555444222222 223444555555


Q ss_pred             hcCCHHHHHHHHHhC
Q 038516          567 RAGLLDEAENLIAES  581 (708)
Q Consensus       567 ~~g~~~~A~~~~~~~  581 (708)
                      +.|++++|++.++++
T Consensus        84 ~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          84 RLKEYEKALKYVRGL   98 (122)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHH
Confidence            555555555555554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=3.8e-07  Score=73.47  Aligned_cols=93  Identities=9%  Similarity=0.044  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcch-------HHHHH
Q 038516          558 YSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTT-------HILLS  629 (708)
Q Consensus       558 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~~~l~  629 (708)
                      +..++..+.+.|++++|+..|+++ ...|.+...+..+..+|...|+++.|+..++++++++|+++..       |..+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            456788899999999999999887 3333568899999999999999999999999999999998765       45566


Q ss_pred             HHHHhcCCchHHHHHHHHHhc
Q 038516          630 NLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       630 ~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      .++...+++++|++.+++...
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHh
Confidence            777888999999999987764

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.49  E-value=1.3e-06  Score=74.22  Aligned_cols=62  Identities=10%  Similarity=0.080  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          590 LWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       590 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++..+..++...|++++|+..++++++++|++..+|..++.+|...|++++|...++++.+.
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45556777888999999999999999999999999999999999999999999999988764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.41  E-value=1.2e-06  Score=74.62  Aligned_cols=135  Identities=11%  Similarity=-0.004  Sum_probs=99.6

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHH
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLL  565 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  565 (708)
                      ..+......+.+.|++++|+..|++.++.  .|....+         ...   -......+       ...+|..++.+|
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~al~~--~~~~~~~---------~~~---~~~~~~~~-------~~~~~~nla~~y   72 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSF---------SNE---EAQKAQAL-------RLASHLNLAMCH   72 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCC---------CSH---HHHHHHHH-------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhcccc---------chH---HHhhhchh-------HHHHHHHHHHHH
Confidence            34556667888889999999999888874  2211100         000   00001111       123577788999


Q ss_pred             HhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 038516          566 SRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCV  641 (708)
Q Consensus       566 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA  641 (708)
                      .+.|++++|+..++++ ...|.++..|..++.++...|++++|...++++++++|+++.+...+..+....+...+.
T Consensus        73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~  149 (170)
T d1p5qa1          73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR  149 (170)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999887 334357889999999999999999999999999999999999999999888777666654

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.41  E-value=1.6e-06  Score=81.56  Aligned_cols=174  Identities=7%  Similarity=-0.076  Sum_probs=131.7

Q ss_pred             CCHHHHHHHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHC----CCCCC-hHHHHHHHHHHhccCcHHHHHHH
Q 038516          468 GDLRAAESIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEH----GLRPD-EITFLSLLSACSHSGLVERGKIL  542 (708)
Q Consensus       468 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~  542 (708)
                      +++++|.++|.           .....|...|++++|.+.|.++.+.    +-.|+ ..+|..+..+|.+.|++++|.+.
T Consensus        31 ~~~~~Aa~~y~-----------~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~   99 (290)
T d1qqea_          31 YKFEEAADLCV-----------QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS   99 (290)
T ss_dssp             HHHHHHHHHHH-----------HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccHHHHHHHHH-----------HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            34677776654           4577899999999999999998763    11222 34688888899999999999999


Q ss_pred             HHHhhHC----CCC-cChHHHHHHHHHHHh-cCCHHHHHHHHHhC----CCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 038516          543 WNQMKEH----SLI-PGHKHYSCMVSLLSR-AGLLDEAENLIAES----PYSEI---RIELWRTLLSTCVAKRNSRMVIQ  609 (708)
Q Consensus       543 ~~~~~~~----~~~-p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~----~~~~~---~~~~~~~l~~~~~~~~~~~~a~~  609 (708)
                      +++..+.    |.. .....+..++..|.. .|++++|.+.++++    +..+.   ...++..++..+...|++++|..
T Consensus       100 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~  179 (290)
T d1qqea_         100 LENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD  179 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHH
Confidence            9987653    211 124556677777755 69999999999886    11101   13457778889999999999999


Q ss_pred             HHHHHHhcCCCCcch-------HHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038516          610 AAEQVLRLDPEDGTT-------HILLSNLYAATGRWDCVAKMRRKMKGSM  652 (708)
Q Consensus       610 ~~~~~~~~~p~~~~~-------~~~l~~~~~~~g~~~eA~~~~~~~~~~~  652 (708)
                      .++++....|.+...       +...+.++...|+++.|.+.+++.....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (290)
T ss_dssp             HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             HHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            999999998887642       4567778889999999999999886643

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.31  E-value=2.8e-06  Score=72.31  Aligned_cols=134  Identities=9%  Similarity=-0.019  Sum_probs=98.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHH
Q 038516          487 CWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLL  565 (708)
Q Consensus       487 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~  565 (708)
                      .+......+...|++.+|+..|+++++.  .+..          .........       .  .+.| ....|..++.++
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~--~~~~----------~~~~~~~~~-------~--~~~~~~~~~~~nla~~~   87 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDADG-------A--KLQPVALSCVLNIGACK   87 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHHHH-------G--GGHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHh--hhhh----------hhhhhhHHH-------H--HhChhhHHHHHHHHHHH
Confidence            3455566777888888888888877652  1000          000000000       0  1223 345677889999


Q ss_pred             HhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHH
Q 038516          566 SRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCV  641 (708)
Q Consensus       566 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA  641 (708)
                      .+.|++++|+..++++ ...|.++..|..++.++...|+++.|+..++++++++|++..++..|..++.......++
T Consensus        88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~~  164 (169)
T d1ihga1          88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  164 (169)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999998 445467889999999999999999999999999999999999999998887766555544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.23  E-value=8.1e-06  Score=69.14  Aligned_cols=143  Identities=8%  Similarity=-0.055  Sum_probs=100.9

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHH
Q 038516          485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSL  564 (708)
Q Consensus       485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~  564 (708)
                      ...+......+.+.|++.+|+..|++.+..  .|...           ....+. ......+       ....|..++.+
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~~~-----------~~~~~~-~~~~~~~-------~~~~~~Nla~~   73 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEMEY-----------GLSEKE-SKASESF-------LLAAFLNLAMC   73 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCC-----------SCCHHH-HHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHhh-----------ccchhh-hhhcchh-------HHHHHHhHHHH
Confidence            345566677788888888888888776652  11100           000000 0001111       12356678889


Q ss_pred             HHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH-HH
Q 038516          565 LSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDC-VA  642 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~e-A~  642 (708)
                      |.+.|++++|+..++++ ...|.+...|..++.++...|++++|...++++++++|+++.++..+..+....+...+ ..
T Consensus        74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k  153 (168)
T d1kt1a1          74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR  153 (168)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence            99999999999999887 33445788899999999999999999999999999999999999999988877776654 34


Q ss_pred             HHHHHH
Q 038516          643 KMRRKM  648 (708)
Q Consensus       643 ~~~~~~  648 (708)
                      +.+..|
T Consensus       154 k~~~~~  159 (168)
T d1kt1a1         154 RTYANM  159 (168)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.22  E-value=0.00017  Score=66.09  Aligned_cols=179  Identities=9%  Similarity=-0.041  Sum_probs=113.9

Q ss_pred             CCHHHHHHHHhhCCC-CChHHHHHHHHHHHh----cCChHHHHHHHHHHHHCCCCCChHHHHHHHH--HHhccCcHHHHH
Q 038516          468 GDLRAAESIFSQVLH-PDLKCWNALLGGYSH----YGMAEEAFMVFEVILEHGLRPDEITFLSLLS--ACSHSGLVERGK  540 (708)
Q Consensus       468 g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~  540 (708)
                      .+...|...+..... .+......+...+..    ..+.+.|...++...+.|..+ .........  ..........+.
T Consensus        52 ~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~-a~~~l~~~~~~~~~~~~~~~~a~  130 (265)
T d1ouva_          52 KNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE-GCASLGGIYHDGKVVTRDFKKAV  130 (265)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH-HHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             hhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhh-HHHhhcccccCCCcccchhHHHH
Confidence            345555555554432 233334444443332    356777888888887765321 111111111  122345667777


Q ss_pred             HHHHHhhHCCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 038516          541 ILWNQMKEHSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAE  612 (708)
Q Consensus       541 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~  612 (708)
                      ..+......   .+...+..|...|..    ..+...+..+++..... .++..+..+...+..    ..|.+.|+..++
T Consensus       131 ~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~  206 (265)
T d1ouva_         131 EYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYS  206 (265)
T ss_dssp             HHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHH
T ss_pred             HHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhccccc-cccccccchhhhcccCcccccchhhhhhhHh
Confidence            777776653   334556667777765    45667777777776443 567777777766665    568999999999


Q ss_pred             HHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHhcCCC
Q 038516          613 QVLRLDPEDGTTHILLSNLYAA----TGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       613 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~  653 (708)
                      ++.+..  ++..+..||.+|..    ..++++|.++|++....|.
T Consensus       207 ~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         207 KACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             hhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            998874  57788999999986    4489999999999877653

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.16  E-value=1.5e-05  Score=66.19  Aligned_cols=129  Identities=5%  Similarity=-0.156  Sum_probs=94.3

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHH
Q 038516          486 KCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLL  565 (708)
Q Consensus       486 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~  565 (708)
                      ..+......+.+.|++.+|+..|++++..  .|....           ..-.........       ....+|..++.+|
T Consensus        18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~--~~~~~~-----------~~~~~~~~~~~~-------~~~~~~~Nla~~~   77 (153)
T d2fbna1          18 FDIKEEGNEFFKKNEINEAIVKYKEALDF--FIHTEE-----------WDDQILLDKKKN-------IEISCNLNLATCY   77 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TTTCTT-----------CCCHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Ccchhh-----------hhhHHHHHhhhh-------HHHHHHhhHHHHH
Confidence            45666777888889999999999888863  221110           000000000000       1134677889999


Q ss_pred             HhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516          566 SRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA  634 (708)
Q Consensus       566 ~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  634 (708)
                      .+.|++++|++.++++ ...|.+...|..++.++...|+++.|...++++++++|++..+...+..+..+
T Consensus        78 ~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          78 NKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            9999999999999997 34445788999999999999999999999999999999999988877766543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=7e-07  Score=91.08  Aligned_cols=147  Identities=10%  Similarity=-0.035  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHCCCCCChHHHHHHHHH--HhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHH
Q 038516          502 EEAFMVFEVILEHGLRPDEITFLSLLSA--CSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLI  578 (708)
Q Consensus       502 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~  578 (708)
                      ..+.+.+++..+....++.......+..  ....+.++.++..+....  ++.| +...+..++..+.+.|+.++|...+
T Consensus        66 ~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~--~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~  143 (497)
T d1ya0a1          66 KNQITTLQGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVF--NVDLPCRVKSSQLGIISNKQTHTSAIVKPQ  143 (497)
T ss_dssp             HHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC---------------------------------C
T ss_pred             HHHHHHHHHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCChhhHHHHHHhHHHHHhCCCHHHHHHHH
Confidence            4455666666654333443322222221  122344444444443333  2333 3455666777777888888777665


Q ss_pred             HhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          579 AESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       579 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      ++.... .....+..++..+...|++++|+..|+++++++|+++.+|..||.+|...|++.+|...+.+....
T Consensus       144 ~~al~~-~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~  215 (497)
T d1ya0a1         144 SSSCSY-ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAV  215 (497)
T ss_dssp             CHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSS
T ss_pred             HHHhCC-CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            544211 123456677777888888888888888888888888888888888888888888888888777653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.05  E-value=2.7e-06  Score=69.94  Aligned_cols=87  Identities=13%  Similarity=0.169  Sum_probs=61.6

Q ss_pred             HHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHH
Q 038516          565 LSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVA----------KRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYA  633 (708)
Q Consensus       565 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~----------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  633 (708)
                      |.+.+.+++|+..++.+ ...|.++..+..++.++..          .+.+++|+..++++++++|+++.+|..+|.+|.
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence            34445556666666555 2222345555555555442          345688999999999999999999999999998


Q ss_pred             hcCC-----------chHHHHHHHHHhcC
Q 038516          634 ATGR-----------WDCVAKMRRKMKGS  651 (708)
Q Consensus       634 ~~g~-----------~~eA~~~~~~~~~~  651 (708)
                      ..|+           +++|.+.|+++.+.
T Consensus        87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l  115 (145)
T d1zu2a1          87 SFAFLTPDETEAKHNFDLATQFFQQAVDE  115 (145)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcccchhhHHHHHHhHHHhhhhhhccccc
Confidence            8764           68888888887753

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.9e-05  Score=59.08  Aligned_cols=77  Identities=13%  Similarity=0.109  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC----C---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHH
Q 038516          556 KHYSCMVSLLSRAGLLDEAENLIAES----P---YSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHIL  627 (708)
Q Consensus       556 ~~~~~l~~~~~~~g~~~~A~~~~~~~----~---~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  627 (708)
                      ..+..++..+.+.|++++|...++++    +   ...+ ...++..++.++.+.|++++|...++++++++|+++.++..
T Consensus         6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N   85 (95)
T d1tjca_           6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence            34446778888888888888887775    1   1112 26788999999999999999999999999999999998888


Q ss_pred             HHHHH
Q 038516          628 LSNLY  632 (708)
Q Consensus       628 l~~~~  632 (708)
                      ++.+.
T Consensus        86 l~~~~   90 (95)
T d1tjca_          86 LKYFE   90 (95)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            76543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.96  E-value=2.3e-05  Score=60.87  Aligned_cols=86  Identities=15%  Similarity=-0.049  Sum_probs=71.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCceeEEEecCeEEEE
Q 038516          592 RTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGLSWIEAKNNVHVF  671 (708)
Q Consensus       592 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  671 (708)
                      -..+..+.+.|++++|+..++++++.+|+++.+|..+|.+|...|++++|+..++++.+.                    
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~--------------------   79 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARML--------------------   79 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhccccccccc--------------------
Confidence            345667888999999999999999999999999999999999999999999999988764                    


Q ss_pred             EeCCCCCcchHHHHHHHHHHHHHHHhhhhhcc
Q 038516          672 SSGDQSHPKIDDAQAELHRLRGNMRKLVTDEF  703 (708)
Q Consensus       672 ~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~  703 (708)
                            +|...+++-.+...-..+++..+++.
T Consensus        80 ------~p~~~~a~~~la~~y~~~g~~~~A~~  105 (112)
T d1hxia_          80 ------DPKDIAVHAALAVSHTNEHNANAALA  105 (112)
T ss_dssp             ------CTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------ccccccchHHHHHHHHHCCCHHHHHH
Confidence                  56666666666666666666655543

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.1e-05  Score=58.78  Aligned_cols=85  Identities=20%  Similarity=0.057  Sum_probs=68.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCCchHHHHHHHHHhcCCCccCCce
Q 038516          587 RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED-------GTTHILLSNLYAATGRWDCVAKMRRKMKGSMLGKEPGL  659 (708)
Q Consensus       587 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~~~~~~~  659 (708)
                      +....-.++..+.+.|+++.|+..+++++++.|++       +.++..||.+|.+.|++++|+..++++.+.        
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l--------   75 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL--------   75 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh--------
Confidence            34445577888999999999999999999886654       346889999999999999999999998764        


Q ss_pred             eEEEecCeEEEEEeCCCCCcchHHHHHHHHHHHHHHHh
Q 038516          660 SWIEAKNNVHVFSSGDQSHPKIDDAQAELHRLRGNMRK  697 (708)
Q Consensus       660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~  697 (708)
                                        .|...++...+..+++.|.|
T Consensus        76 ------------------~P~~~~a~~Nl~~~~~~l~k   95 (95)
T d1tjca_          76 ------------------DPEHQRANGNLKYFEYIMAK   95 (95)
T ss_dssp             ------------------CTTCHHHHHHHHHHHHHHHC
T ss_pred             ------------------CcCCHHHHHHHHHHHHHhCc
Confidence                              46666777777777766653

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.93  E-value=5e-06  Score=68.23  Aligned_cols=125  Identities=10%  Similarity=0.032  Sum_probs=72.2

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCC-hHHHHHHHHHHhcc----------CcHHHHHHHHHHhhHCCCCcC-hHHHHHHH
Q 038516          495 YSHYGMAEEAFMVFEVILEHGLRPD-EITFLSLLSACSHS----------GLVERGKILWNQMKEHSLIPG-HKHYSCMV  562 (708)
Q Consensus       495 ~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~----------~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~  562 (708)
                      |-+.+.+++|+..|++.++.  .|+ ...+..+..+|...          +.+++|+..|++.++  +.|+ ...|..++
T Consensus         7 ~~r~~~fe~A~~~~e~al~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~--l~P~~~~a~~~lG   82 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALL--IDPKKDEAVWCIG   82 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH--hcchhhHHHhhHH
Confidence            44556677788888877774  554 44455555555433          333455555555554  3333 34444455


Q ss_pred             HHHHhcCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038516          563 SLLSRAGLLDEAENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVA  642 (708)
Q Consensus       563 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~  642 (708)
                      .+|...|++.             ++...         ..++++.|...++++++++|++...+..|+...       .|.
T Consensus        83 ~~y~~~g~~~-------------~~~~~---------~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------ka~  133 (145)
T d1zu2a1          83 NAYTSFAFLT-------------PDETE---------AKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------KAP  133 (145)
T ss_dssp             HHHHHHHHHC-------------CCHHH---------HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------THH
T ss_pred             HHHHHcccch-------------hhHHH---------HHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------HHH
Confidence            4444433211             01100         113468899999999999999998888887654       445


Q ss_pred             HHHHHHhcCC
Q 038516          643 KMRRKMKGSM  652 (708)
Q Consensus       643 ~~~~~~~~~~  652 (708)
                      ++..+..++|
T Consensus       134 ~~~~e~~k~~  143 (145)
T d1zu2a1         134 QLHAEAYKQG  143 (145)
T ss_dssp             HHHHHHHHSS
T ss_pred             HHHHHHHHHh
Confidence            5555555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.91  E-value=3.3e-05  Score=65.58  Aligned_cols=108  Identities=13%  Similarity=0.058  Sum_probs=78.3

Q ss_pred             HHHhccCcHHHHHHHHHHhhHC--CCCcChHHHHHHHHHHHhcCCH-HHHHHHHHhCCCCCCCHHHHHHHHHHHHhcCCH
Q 038516          528 SACSHSGLVERGKILWNQMKEH--SLIPGHKHYSCMVSLLSRAGLL-DEAENLIAESPYSEIRIELWRTLLSTCVAKRNS  604 (708)
Q Consensus       528 ~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  604 (708)
                      ......|++++|.+.|......  |-.....          ..+.+ .....-++.     .....+..+...+...|++
T Consensus        19 ~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~----------~~~~w~~~~r~~l~~-----~~~~a~~~la~~~~~~g~~   83 (179)
T d2ff4a2          19 VHAAAAGRFEQASRHLSAALREWRGPVLDDL----------RDFQFVEPFATALVE-----DKVLAHTAKAEAEIACGRA   83 (179)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG----------TTSTTHHHHHHHHHH-----HHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccccccC----------cchHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCc
Confidence            4667788888888888888764  2110000          00111 111111111     1245677888899999999


Q ss_pred             HHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          605 RMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       605 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                      ++|+..++++++++|.+...|..|+.+|...|++++|++.|+++++
T Consensus        84 ~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~  129 (179)
T d2ff4a2          84 SAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  129 (179)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.89  E-value=4.4e-05  Score=63.47  Aligned_cols=88  Identities=14%  Similarity=-0.033  Sum_probs=64.7

Q ss_pred             HHHHHhcCCHHHHHHHHHhC----CCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC------
Q 038516          562 VSLLSRAGLLDEAENLIAES----PYSEIR----------IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPED------  621 (708)
Q Consensus       562 ~~~~~~~g~~~~A~~~~~~~----~~~~~~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------  621 (708)
                      +..+.+.|++++|+..|+++    +.. |+          ...|..+..++...|++++|...+++++++.|+.      
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~-~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~   94 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTM-PPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD   94 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTS-CTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhh-hhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccc
Confidence            44555667777777777665    222 11          3467778888888999999999988888764432      


Q ss_pred             -----cchHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038516          622 -----GTTHILLSNLYAATGRWDCVAKMRRKMKG  650 (708)
Q Consensus       622 -----~~~~~~l~~~~~~~g~~~eA~~~~~~~~~  650 (708)
                           ..++..+|.+|...|++++|...++++.+
T Consensus        95 ~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          95 EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                 22577899999999999999999998765

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.83  E-value=0.0022  Score=59.74  Aligned_cols=170  Identities=8%  Similarity=0.011  Sum_probs=84.5

Q ss_pred             CCcchhhHHHHHHhccCChHHHHHHhhcCCCCCcccHHHHHHHHHhCCCChHHHHHHHHHHHHcCCCCCcchHHHHHHHh
Q 038516           46 QSPYMYNNVLSMYGRCGSIRDARQVFDEIPKRSLVSYNALIAAYSRDHDHAHLTFRLIDQMEFECLRPNGLTFTSLAQAV  125 (708)
Q Consensus        46 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  125 (708)
                      ++..-...+.+-|-+.|.++.|..+|..+..     |..++..+.+.++ +..|.+.+.+.      -+..+|..+...|
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~-~~~avd~~~k~------~~~~~~k~~~~~l   79 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGE-YQAAVDGARKA------NSTRTWKEVCFAC   79 (336)
T ss_dssp             C----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTC-HHHHHHHHHHH------TCHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhcc-HHHHHHHHHHc------CCHHHHHHHHHHH
Confidence            3444445566666677777777777766554     6666667777777 77776666543      1344666666666


Q ss_pred             ccccchHHHHHHHHHHHHhCCCCchhHHhHHHHHhHhCCChhHHHHHhccCC---CCCcccHHHHHHHHhcCCChhHHHH
Q 038516          126 SLLEDQLMGSLLHAQVIKYGSSEDTCVQTSLLGMYSNCGDFESAKRIFGLIG---DKDAVAWNSIILGNFKNDKMKEGLS  202 (708)
Q Consensus       126 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~  202 (708)
                      ........+     .+.......++.....++..|-..|.++....+++...   ..+...++-++..+++.+ .++..+
T Consensus        80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e  153 (336)
T d1b89a_          80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMRE  153 (336)
T ss_dssp             HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHH
Confidence            555444322     22222333455555667777777777777777776432   234455666777666643 333333


Q ss_pred             HHHHHHhCCCCCCcchHHHHHHHHhccCChhHHHHHH
Q 038516          203 LFGAMVGSGVNPTQFSYSMLLNACSRMGNFVCGKVIH  239 (708)
Q Consensus       203 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  239 (708)
                      .++...      +......+++.|.+.+-++++.-++
T Consensus       154 ~l~~~s------~~y~~~k~~~~c~~~~l~~elv~Ly  184 (336)
T d1b89a_         154 HLELFW------SRVNIPKVLRAAEQAHLWAELVFLY  184 (336)
T ss_dssp             HHHHHS------TTSCHHHHHHHHHTTTCHHHHHHHH
T ss_pred             HHHhcc------ccCCHHHHHHHHHHcCChHHHHHHH
Confidence            333321      1223344555555555554444333

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.82  E-value=0.0033  Score=58.45  Aligned_cols=263  Identities=11%  Similarity=0.112  Sum_probs=136.4

Q ss_pred             hHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHH
Q 038516          357 TTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILK  436 (708)
Q Consensus       357 ~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~  436 (708)
                      ..+.+.|.+.|.++.|..++..+..     |..++..+.+.+++..|.+++.+.      -+..+|..+..+|.+.....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~   86 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR   86 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHH
Confidence            3445556666777777777665544     555667777777777777776544      13456666666666554443


Q ss_pred             HHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHHHHHhhCC---CCChHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 038516          437 QGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAESIFSQVL---HPDLKCWNALLGGYSHYGMAEEAFMVFEVILE  513 (708)
Q Consensus       437 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  513 (708)
                      .+     .+.......++.....++..|...|.+++...+++...   ..+...++.++..|++.+ .++..+.++... 
T Consensus        87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s-  159 (336)
T d1b89a_          87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-PQKMREHLELFW-  159 (336)
T ss_dssp             HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS-
T ss_pred             HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-hHHHHHHHHhcc-
Confidence            32     11122334455555677888888888888888888653   456667788888887754 344444433321 


Q ss_pred             CCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC--------CCCcChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCC
Q 038516          514 HGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH--------SLIPGHKHYSCMVSLLSRAGLLDEAENLIAESPYSE  585 (708)
Q Consensus       514 ~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  585 (708)
                           +.....-++..|...+.+.++.-++.++...        ...++..-....+..+.+.++.+...+++.-.... 
T Consensus       160 -----~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~-  233 (336)
T d1b89a_         160 -----SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF-  233 (336)
T ss_dssp             -----TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH-
T ss_pred             -----ccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc-
Confidence                 1111223344555555555555444443210        01122222233344555555555444433322111 


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHH-------------HHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516          586 IRIELWRTLLSTCVAKRNSRMV-------------IQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~~~~~~a-------------~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~  646 (708)
                       .+...+.++......-+..+.             ...++....  -++..++..|..+|.+.++++.-++.++
T Consensus       234 -~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~--~n~~~vn~al~~lyie~~d~~~l~~~i~  304 (336)
T d1b89a_         234 -KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN--HNNKSVNESLNNLFITEEDYQALRTSID  304 (336)
T ss_dssp             -CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT--TCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             -CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH--cChHHHHHHHHHHHhCcchhHHHHHHHH
Confidence             123334444444444444444             444444332  3455688999999999999766554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=8.2e-05  Score=59.24  Aligned_cols=90  Identities=12%  Similarity=0.029  Sum_probs=55.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC--------hHHH
Q 038516          488 WNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG--------HKHY  558 (708)
Q Consensus       488 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~--------~~~~  558 (708)
                      +..+...|.+.|++++|+..|++.++.  .| +...+..+..+|.+.|++++|+..++++++.  .|+        ..+|
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~~~~a~~~   82 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDYRQIAKAY   82 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHHHHHHHHH
Confidence            344566677777777777777777774  34 4555666666777777777777777776652  111        1244


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHhC
Q 038516          559 SCMVSLLSRAGLLDEAENLIAES  581 (708)
Q Consensus       559 ~~l~~~~~~~g~~~~A~~~~~~~  581 (708)
                      ..++..+...+++++|.+.+++.
T Consensus        83 ~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          83 ARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHH
Confidence            45555555566666666665554

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.75  E-value=0.0013  Score=59.87  Aligned_cols=82  Identities=9%  Similarity=-0.047  Sum_probs=42.3

Q ss_pred             CcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh----cCCHHHHHHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHH
Q 038516          534 GLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR----AGLLDEAENLIAESPYSEIRIELWRTLLSTCVA----KRNSR  605 (708)
Q Consensus       534 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~  605 (708)
                      .+...+..+++...+.|   +......|+..|..    ..++++|...|++.... .++..+..|+..|..    ..|.+
T Consensus       160 ~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g~~~a~~~LG~~y~~G~g~~~n~~  235 (265)
T d1ouva_         160 KDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-ENGGGCFNLGAMQYNGEGVTRNEK  235 (265)
T ss_dssp             CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTSSSSCCST
T ss_pred             cccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc-cCHHHHHHHHHHHHcCCCCccCHH
Confidence            34455555555554433   22333334444443    34566666666665333 344455555555543    23666


Q ss_pred             HHHHHHHHHHhcCC
Q 038516          606 MVIQAAEQVLRLDP  619 (708)
Q Consensus       606 ~a~~~~~~~~~~~p  619 (708)
                      +|...++++.+..+
T Consensus       236 ~A~~~~~kAa~~g~  249 (265)
T d1ouva_         236 QAIENFKKGCKLGA  249 (265)
T ss_dssp             THHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHCcC
Confidence            77777777766643

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.65  E-value=8.3e-05  Score=67.49  Aligned_cols=128  Identities=17%  Similarity=0.094  Sum_probs=90.1

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcC-hHHHHHHHHHHHhcCCHH
Q 038516          495 YSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPG-HKHYSCMVSLLSRAGLLD  572 (708)
Q Consensus       495 ~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~  572 (708)
                      ..+.|++++|+..+++.++.  .| |...+..+...++..|++++|.+.|+...+  +.|+ ...+..+...+...+..+
T Consensus         6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~--l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIK--LFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHhccccH
Confidence            34678999999999999985  55 567788888899999999999999999887  5565 344555555665555555


Q ss_pred             HHHHHHHhC-CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516          573 EAENLIAES-PYSEI-RIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       573 ~A~~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  626 (708)
                      ++..-.... ...+| +...+...+..+...|+.++|...++++.++.|+.+..+.
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            544433322 11212 2233344455677889999999999999999999877543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.28  E-value=0.0019  Score=54.33  Aligned_cols=72  Identities=17%  Similarity=0.131  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCC-ChHHHHHHHHHHhccCcHHHHHHHHHHhhH-----CCCCcChHHH
Q 038516          485 LKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRP-DEITFLSLLSACSHSGLVERGKILWNQMKE-----HSLIPGHKHY  558 (708)
Q Consensus       485 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-----~~~~p~~~~~  558 (708)
                      ...+..+...+...|++++|+..++++++.  .| +...|..++.++...|+..+|++.|+++.+     .|+.|+..+-
T Consensus        67 ~~a~~~la~~~~~~g~~~~Al~~~~~al~~--~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          67 VLAHTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHHHHCCCchHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            356777888999999999999999999985  55 677799999999999999999999998744     3888887653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.27  E-value=0.001  Score=54.83  Aligned_cols=68  Identities=10%  Similarity=-0.042  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhC-------CCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcc
Q 038516          556 KHYSCMVSLLSRAGLLDEAENLIAES-------PYSEIR-----IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGT  623 (708)
Q Consensus       556 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  623 (708)
                      ..|+.++.+|...|++++|...++++       ....++     ...+..++.++...|++++|...+++++++.|+...
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~  135 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG  135 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhc
Confidence            34556666677777777766665554       111122     224566788899999999999999999988765543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.24  E-value=0.00024  Score=71.75  Aligned_cols=109  Identities=7%  Similarity=-0.096  Sum_probs=41.9

Q ss_pred             HHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHHHHHHHhC-CCCCCCHHHHHHHHHHHHhc
Q 038516          523 FLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEAENLIAES-PYSEIRIELWRTLLSTCVAK  601 (708)
Q Consensus       523 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~  601 (708)
                      +..+...+.+.|+.++|...++....  ..| ...+..+++.+...|++++|...|+++ ...|.+...|+.++..+...
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~--~~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~  199 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCS--YIC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSK  199 (497)
T ss_dssp             --------------------CCHHHH--HHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHT
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhC--CCH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHc
Confidence            33333344444444444444433332  111 123444555555555555555555554 12212344455555555555


Q ss_pred             CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038516          602 RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA  634 (708)
Q Consensus       602 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  634 (708)
                      |+..+|+..|.+++..+|+.+.++..|+.++.+
T Consensus       200 ~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         200 GDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             TCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            555555555555555555555555555544443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.06  E-value=0.00016  Score=65.55  Aligned_cols=120  Identities=15%  Similarity=0.103  Sum_probs=85.1

Q ss_pred             HhccCcHHHHHHHHHHhhHCCCCc-ChHHHHHHHHHHHhcCCHHHHHHHHHhCCCCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038516          530 CSHSGLVERGKILWNQMKEHSLIP-GHKHYSCMVSLLSRAGLLDEAENLIAESPYSEI-RIELWRTLLSTCVAKRNSRMV  607 (708)
Q Consensus       530 ~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a  607 (708)
                      ..+.|++++|+..+++.++  ..| +...+..++..|+..|++++|.+.++.+....| ....+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            4567999999999999998  455 478899999999999999999999999833224 355555555555444433333


Q ss_pred             HHHHHHHHh-cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          608 IQAAEQVLR-LDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       608 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      .....+... .+|+....+...+.++...|++++|.+.++++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            322222111 23444455667788899999999999999988664

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.95  E-value=0.002  Score=49.03  Aligned_cols=66  Identities=6%  Similarity=0.029  Sum_probs=46.3

Q ss_pred             CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCCCc-chHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038516          586 IRIELWRTLLSTCVAK---RNSRMVIQAAEQVLRLDPEDG-TTHILLSNLYAATGRWDCVAKMRRKMKGS  651 (708)
Q Consensus       586 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~eA~~~~~~~~~~  651 (708)
                      +...+.-...+++.++   .+.++|+.+++++++.+|.+. ..+..|+.+|.+.|++++|++.++++.+.
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4455555555665544   355678888888887777654 56778888888888888888888877663

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.70  E-value=0.31  Score=47.31  Aligned_cols=124  Identities=9%  Similarity=-0.012  Sum_probs=75.3

Q ss_pred             CChHHHHHHHHHHHHCCCCCChHHH----HHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcCCHHHH
Q 038516          499 GMAEEAFMVFEVILEHGLRPDEITF----LSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAGLLDEA  574 (708)
Q Consensus       499 g~~~~A~~~~~~m~~~g~~p~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  574 (708)
                      .+.+.|..++....... ..+....    ..+.......+..+.+..++......+  .+.......+....+.+++..+
T Consensus       228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~  304 (450)
T d1qsaa1         228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL  304 (450)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence            57788888888776643 2222221    122223444566677777777666543  2333444455556677888888


Q ss_pred             HHHHHhCCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHH
Q 038516          575 ENLIAESPYSEIR-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLS  629 (708)
Q Consensus       575 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  629 (708)
                      ...+..++..+.. ....--++.++...|+.+.|...+..+.. .+   +.|-.|+
T Consensus       305 ~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~-~~---~fYG~LA  356 (450)
T d1qsaa1         305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ-QR---GFYPMVA  356 (450)
T ss_dssp             HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-SC---SHHHHHH
T ss_pred             HHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc-CC---ChHHHHH
Confidence            8888888654222 33334455677788888888888888764 22   3555554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.21  E-value=0.025  Score=44.46  Aligned_cols=50  Identities=16%  Similarity=-0.009  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHh----cCCchHHHHHHHHHhcCCC
Q 038516          602 RNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAA----TGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       602 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~eA~~~~~~~~~~~~  653 (708)
                      .|.++|...++++.+.  .++.....|+.+|..    ..+.++|.+++++..+.|.
T Consensus        73 ~d~~~A~~~~~~aa~~--g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          73 KDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             CCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             hhhHHHHHHHhhhhcc--CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            4667777777777654  345556677777766    3567777777777766553

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.62  E-value=0.28  Score=36.48  Aligned_cols=140  Identities=9%  Similarity=-0.010  Sum_probs=97.7

Q ss_pred             HHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHC-CCCcChHHHHHHHHHHHhcCCHHH
Q 038516          495 YSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEH-SLIPGHKHYSCMVSLLSRAGLLDE  573 (708)
Q Consensus       495 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~  573 (708)
                      +.-.|..++..+++.+....   .+..-|++++--....-+-+...+.++.+-+- ++.              .++++..
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence            45568888888888888773   35566777776666666777777777766543 222              2333343


Q ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038516          574 AENLIAESPYSEIRIELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRRKMKGSML  653 (708)
Q Consensus       574 A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~~~~~~~~  653 (708)
                      ....+-.+.   ......+..+.....+|+-+.-..++..+++-+.-+++....++.+|.+.|...+|-+++.++.++|+
T Consensus        75 vv~C~~~~n---~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          75 VVECGVINN---TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHHHHTT---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhc---chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            333333332   23455666677777888888888888888887666788888999999999999999999999988887


Q ss_pred             c
Q 038516          654 G  654 (708)
Q Consensus       654 ~  654 (708)
                      +
T Consensus       152 K  152 (161)
T d1wy6a1         152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.54  E-value=0.14  Score=39.94  Aligned_cols=112  Identities=13%  Similarity=-0.020  Sum_probs=77.2

Q ss_pred             CChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHh----cCCHHHH
Q 038516          499 GMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSR----AGLLDEA  574 (708)
Q Consensus       499 g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A  574 (708)
                      .|+++|+++|++..+.| .|.  ....|.  .....+.++|.+++++..+.|.   ......|...|..    ..+.++|
T Consensus         7 kd~~~A~~~~~kaa~~g-~~~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g~---~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           7 KDLKKAIQYYVKACELN-EMF--GCLSLV--SNSQINKQKLFQYLSKACELNS---GNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTT--HHHHHH--TCTTSCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHHCC-Chh--hhhhhc--cccccCHHHHHHHHhhhhcccc---hhhhhhHHHhhhhccccchhhHHH
Confidence            36788888888888876 222  222232  3445678899999998887663   3445556666654    4578899


Q ss_pred             HHHHHhCCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 038516          575 ENLIAESPYSEIRIELWRTLLSTCVA----KRNSRMVIQAAEQVLRLDP  619 (708)
Q Consensus       575 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p  619 (708)
                      .+++++.... .++.....|...|..    ..|.++|...++++.+...
T Consensus        79 ~~~~~~aa~~-g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhcc-CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            9999888444 456666667666655    4689999999999887654

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.70  E-value=0.16  Score=38.33  Aligned_cols=75  Identities=8%  Similarity=-0.037  Sum_probs=52.6

Q ss_pred             CcChHHHHHHHHHHHhcCC---HHHHHHHHHhCCCCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHH
Q 038516          552 IPGHKHYSCMVSLLSRAGL---LDEAENLIAESPYSEI-R-IELWRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHI  626 (708)
Q Consensus       552 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  626 (708)
                      .|+..+-..++.++.+...   .+++..++++.-...| + .+.|-.|.-+|.+.|++++|...++++++++|++..+..
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~  111 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  111 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHH
Confidence            3455555556666665543   4567777776621112 3 467777888899999999999999999999999876543

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.96  E-value=2.8  Score=40.10  Aligned_cols=353  Identities=9%  Similarity=0.004  Sum_probs=189.1

Q ss_pred             HHHhcccCCChHHHHHHHhccCCCChhHHHHHHHHHHcCCCchHHHHHHHHHHHcCCCCCCHhHHHHHHHHHcCCCCccc
Q 038516          257 LLDMYSKCSDTQTAFSVFTRIENPDLVSWNSMIAGYMENGNGEKAVDMFVALRRMSLLKPDEYTFAAIISATSALPASAY  336 (708)
Q Consensus       257 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~~p~~~t~~~ll~~~~~~~~~~~  336 (708)
                      .+..+.+.++++.....+..-+ .+...-.....+....|+.+.|...+..+-..+...|+..                 
T Consensus        78 ~l~~L~~~~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~~c-----------------  139 (450)
T d1qsaa1          78 FVNELARREDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNAC-----------------  139 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHH-----------------
T ss_pred             HHHHHHhccCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCchHH-----------------
Confidence            3455566777776665554322 2444445667778888888888888777766533444432                 


Q ss_pred             hHHHHHHHHHHCCCCchhHHhHHHHHHHhcCCChhHHHHHhhcCCCCEeeehhhHHHHhcCCChHHHHHHHHHHhHCCCc
Q 038516          337 GKPLHALVIKTGYDSSVFVGTTLLNMYFKNGDAESPQKVFMLIAEKDIVLWTEMIIGHSRMGDGECAIKLFCKMCREGLK  416 (708)
Q Consensus       337 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~  416 (708)
                       ..++..+.+.| ..+...+-.-+......|+...|..+...+...........+......   ..+.....   ..  .
T Consensus       140 -~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p---~~~~~~~~---~~--~  209 (450)
T d1qsaa1         140 -DKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFAR---TT--G  209 (450)
T ss_dssp             -HHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHH---HS--C
T ss_pred             -HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhCh---HhHHHHHh---cC--C
Confidence             23444444444 333333344555566667787787777766543333333333332221   12211111   11  2


Q ss_pred             cCHHHHHHHHHHHhC--cccHHHHHHHHHHHHHhCCCCchh---HHHHHHHhhHhcCCHHHHHHHHhhCC--CCChHHHH
Q 038516          417 CDNFALSGALSACAD--LAILKQGEMIHSQAEKTGHGVEMS---VCGSLVDMYAKNGDLRAAESIFSQVL--HPDLKCWN  489 (708)
Q Consensus       417 p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~  489 (708)
                      ++......+..+..+  ..+.+.+...+.............   ....+...+...+..+.+...+....  ..+.....
T Consensus       210 ~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  289 (450)
T d1qsaa1         210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIE  289 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHH
T ss_pred             CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccccchHHHH
Confidence            222222223333322  245666666666665443222211   11123333344566677776665543  23444333


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHHHHHHhcC
Q 038516          490 ALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMVSLLSRAG  569 (708)
Q Consensus       490 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  569 (708)
                      -.+......+++..+...+..|.... .-...-.-.+..++...|+.+.|..+|..+..   .++  .|..|..  .+.|
T Consensus       290 w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg  361 (450)
T d1qsaa1         290 RRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA--QRIG  361 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH--HHTT
T ss_pred             HHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH--HHcC
Confidence            34555566788888888888764321 11223345667788889999999999988864   233  3444432  2223


Q ss_pred             CHHHHHHHHHhCCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038516          570 LLDEAENLIAESPYSEIRIEL---WRTLLSTCVAKRNSRMVIQAAEQVLRLDPEDGTTHILLSNLYAATGRWDCVAKMRR  646 (708)
Q Consensus       570 ~~~~A~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~eA~~~~~  646 (708)
                      ..-.. . ....+........   -...+..+...|....|...+..+.+..  ++.-...++.+..+.|.++.|+....
T Consensus       362 ~~~~~-~-~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~la~lA~~~g~~~~aI~a~~  437 (450)
T d1qsaa1         362 EEYEL-K-IDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQLARYAFNNQWWDLSVQATI  437 (450)
T ss_dssp             CCCCC-C-CCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCC-C-cCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCChhHHHHHHH
Confidence            21000 0 0001111011111   1112344667899999999888877543  35567788999999999999998877


Q ss_pred             HHh
Q 038516          647 KMK  649 (708)
Q Consensus       647 ~~~  649 (708)
                      +..
T Consensus       438 ~~~  440 (450)
T d1qsaa1         438 AGK  440 (450)
T ss_dssp             HTT
T ss_pred             HHH
Confidence            664

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.63  E-value=0.95  Score=33.55  Aligned_cols=140  Identities=9%  Similarity=-0.036  Sum_probs=79.7

Q ss_pred             hcCCChHHHHHHHHHHhHCCCccCHHHHHHHHHHHhCcccHHHHHHHHHHHHHhCCCCchhHHHHHHHhhHhcCCHHHHH
Q 038516          395 SRMGDGECAIKLFCKMCREGLKCDNFALSGALSACADLAILKQGEMIHSQAEKTGHGVEMSVCGSLVDMYAKNGDLRAAE  474 (708)
Q Consensus       395 ~~~~~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  474 (708)
                      .-.|..++..+++.+...+   .+..-|+.++......-+-+...++++.+-+.   .|          ..+++++....
T Consensus        13 ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv   76 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVV   76 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHH
T ss_pred             HHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHH
Confidence            3456677777777766553   23445555555444444444444444433221   11          11233333333


Q ss_pred             HHHhhCCCCChHHHHHHHHHHHhcCChHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCC
Q 038516          475 SIFSQVLHPDLKCWNALLGGYSHYGMAEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLI  552 (708)
Q Consensus       475 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  552 (708)
                      .-+-.+ ..+...+...+......|+-++-.++++.+.+.+ +|++.....+..+|.+.|...++-+++.++-+.|++
T Consensus        77 ~C~~~~-n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          77 ECGVIN-NTLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHT-TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHh-cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            322222 1233444555667777788888888888766654 777777777777888888888888888887777654

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.52  E-value=4  Score=28.56  Aligned_cols=61  Identities=16%  Similarity=0.186  Sum_probs=38.1

Q ss_pred             hHHHHHHHHHHHHCCCCCChHHHHHHHHHHhccCcHHHHHHHHHHhhHCCCCcChHHHHHHH
Q 038516          501 AEEAFMVFEVILEHGLRPDEITFLSLLSACSHSGLVERGKILWNQMKEHSLIPGHKHYSCMV  562 (708)
Q Consensus       501 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l~  562 (708)
                      .-++.+-++.+....+.|+.......+.+|.+.+++..|.++|+..+.+ ..++...|..++
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil   82 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI   82 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence            3345555666666666777777777777777777777777777776653 112334454443