Citrus Sinensis ID: 038518

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-
Protein Sequence
VAAAPLLLFDFIAASGRNKRSPRAVSVEMPVMALGTRGSLYEVLRVEPKATISEIKTAKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLVSRRRTRTTSFGCSGRSGFHPTRRWETDQCWYEFSI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHcccHHHHHHHcccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEHEEccccccccccccccccccHHHccccccHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccccccccccccccccccccccccccEEEEcc
Coil and Loop (DISEMBL)
VAAAPLLLFDFIAasgrnkrspravsvempvmalgtrgslyevlrvepkatiseiktakvyhpdlsgngrdftEIHNTYetlldpkakavyDMSLvsrrrtrttsfgcsgrsgfhptrrwetdqcwYEFSI
Flexible Loop (DISEMBL)
VAAAPLLLFDFiaasgrnkrspravsvempvmalgtrgslyeVLRVEPKatiseiktakvyhpdlsgngrDFTEIHNTYetlldpkakavYDMSLvsrrrtrttsfgcsgrsgfhptrrwetdqcwyefsi
Low Complexity Region (SEG)
VAAAPLLLFDFIAASGRNKRSPRAVSVEMPVMALGTRGSLYEVLRVEPKATISEIKTAKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLVsrrrtrttsfgcsgrsgfHPTRRWETDQCWYEFSI
Disordered region (IsUnstruct)
*****LLLFDFIAA************VEMPVMALGTRGSLYEVLRVEPKATISEIKTAKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLVSRRRTRTTSFGCSGRSGFHPTRRWETDQCWYEF**
Disordered Region (DISOPRED)
*************************************GSLYEVLRVEPKATISEIKTAKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSL**********************RRWETDQCWYEFSI
Disordered Region (DISEMBL)
VAAAPLLLFDFIAASGRNKRSPRAVSVEMPVMALGTRGSLYEVLRVEPKATISEIKTAKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLVSRRRTRTTSFGCSGRSGFHPTRRWETDQCWYEFSI
Disordered Region (DISPRO)
**AAPLLLFDFIAAS**********************GSLYEVLRVEPKATISEIKTAKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLVSR******************TRRWETDQCWYEFSI
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VAAAPLLLFDFIAASGRNKRSPRAVSVEMPVMALGTRGSLYEVLRVEPKATISEIKTAKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLVSRRRTRTTSFGCSGRSGFHPTRRWETDQCWYEFSI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	131	2.2.26 [Sep-21-2011]
Q9FYB5	161	Chaperone protein dnaJ 11	no	no	0.656	0.534	0.415	2e-12
Q50312	309	DnaJ-like protein MG002 h	yes	no	0.435	0.184	0.444	1e-05
Q8RB67	384	Chaperone protein DnaJ OS	yes	no	0.419	0.143	0.421	2e-05
P47248	310	DnaJ-like protein MG002 O	yes	no	0.557	0.235	0.387	2e-05
Q71ZJ8	376	Chaperone protein DnaJ OS	yes	no	0.404	0.140	0.442	6e-05
C1KVB9	376	Chaperone protein DnaJ OS	yes	no	0.404	0.140	0.442	6e-05
B0S1F7	372	Chaperone protein DnaJ OS	yes	no	0.419	0.147	0.406	8e-05
P0DJM1	377	Chaperone protein DnaJ OS	yes	no	0.404	0.140	0.426	8e-05
B8DE39	376	Chaperone protein DnaJ OS	yes	no	0.404	0.140	0.426	8e-05
G2K045	377	Chaperone protein DnaJ OS	yes	no	0.404	0.140	0.426	8e-05

>sp|Q9FYB5|DNJ11_ARATH Chaperone protein dnaJ 11, chloroplastic OS=Arabidopsis thaliana GN=ATJ11 PE=1 SV=2

 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/101 (41%), Positives = 59/101 (58%), Gaps = 15/101 (14%)

Query: 38  GSLYEVLRVEPKATISEIKTA-----KVYHPDLSGNGR-------DFTEIHNTYETLLDP 85
            SLY+VL V   AT  +IK+A     ++ HPD++G  R       +F +IH  Y TL DP
Sbjct: 64  ASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSSADEFMKIHAAYCTLSDP 123

Query: 86  KAKAVYDMSLVSRRRTRTTSFGCSGRSGFHPTRRWETDQCW 126
           + ++VYD  ++  RR+R  + G SG  G +  R WETDQCW
Sbjct: 124 EKRSVYDRRML--RRSRPLTVGTSGL-GSYVGRNWETDQCW 161

Have a continuous role in plant development probably in the structural organization of compartments.
Arabidopsis thaliana (taxid: 3702)

>sp|Q50312|DNAJL_MYCPN DnaJ-like protein MG002 homolog OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=MPN_002 PE=4 SV=1

 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/63 (44%), Positives = 37/63 (58%), Gaps = 6/63 (9%)

Query: 39 SLYEVLRVEPKATISEIKT-----AKVYHPDLSGNGRD-FTEIHNTYETLLDPKAKAVYD 92
          +LY++L +   AT+ EIKT     AK YHPD++  G D F +I+N Y  L D   KA YD
Sbjct: 2  TLYDLLELPQTATLQEIKTAYKRLAKRYHPDINKQGADTFVKINNAYAVLSDTTQKAEYD 61

Query: 93 MSL 95
            L
Sbjct: 62 AML 64

Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634)

>sp|Q8RB67|DNAJ_THETN Chaperone protein DnaJ OS=Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) GN=dnaJ PE=3 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 36/64 (56%), Gaps = 9/64 (14%)

Query: 39 SLYEVLRVEPKATISEIKTA-----KVYHPDLSGNGRD----FTEIHNTYETLLDPKAKA 89
           LYE+L V+  A+  EIK A     K YHPDL+   ++    F EI+  YE L DP+ +A
Sbjct: 5  DLYEILGVDRNASQEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRA 64

Query: 90 VYDM 93
           YD 
Sbjct: 65 QYDQ 68

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Thermoanaerobacter tengcongensis (strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4) (taxid: 273068)

>sp|P47248|DNAJL_MYCGE DnaJ-like protein MG002 OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=MG002 PE=4 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 39  SLYEVLRVEPKATISEIKTA-----KVYHPDLSGNG-RDFTEIHNTYETLLDPKAKAVYD 92
           +LY++L +   A+I EIK A     K YHPD++  G + F EI+N Y  L DP  K  YD
Sbjct: 2   NLYDLLELPTTASIKEIKIAYKRLAKRYHPDVNKLGSQTFVEINNAYSILSDPNQKEKYD 61

Query: 93  -MSLVSRRRTRTTSFGCSGR 111
            M  V+  + R  +   S R
Sbjct: 62  SMLKVNDFQNRIKNLDISVR 81

Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273)

>sp|Q71ZJ8|DNAJ_LISMF Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dnaJ PE=3 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          YEVL V   A+  EIK A     K YHPD++   G    F EI   YE L DP+ +A YD
Sbjct: 7  YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 93 M 93
           
Sbjct: 67 Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain F2365) (taxid: 265669)

>sp|C1KVB9|DNAJ_LISMC Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=dnaJ PE=3 SV=1

 Score = 46.2 bits (108), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          YEVL V   A+  EIK A     K YHPD++   G    F EI   YE L DP+ +A YD
Sbjct: 7  YEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 93 M 93
           
Sbjct: 67 Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4b (strain Clip81459) (taxid: 568819)

>sp|B0S1F7|DNAJ_FINM2 Chaperone protein DnaJ OS=Finegoldia magna (strain ATCC 29328) GN=dnaJ PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/64 (40%), Positives = 34/64 (53%), Gaps = 9/64 (14%)

Query: 39 SLYEVLRVEPKATISEIKT-----AKVYHPDLSGNGRD----FTEIHNTYETLLDPKAKA 89
          +LYE+L V   AT  EIK      AK YHPD++    +    F EI+  YE L D + + 
Sbjct: 3  NLYEILEVNENATQEEIKKSYRRLAKKYHPDINSGDSEAENKFKEINGAYEVLGDKEKRK 62

Query: 90 VYDM 93
           YDM
Sbjct: 63 KYDM 66

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Finegoldia magna (strain ATCC 29328) (taxid: 334413)

>sp|P0DJM1|DNAJ_LISMO Chaperone protein DnaJ OS=Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) GN=dnaJ PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          YEVL +   A+  EIK A     K YHPD++   G    F EI   YE L DP+ +A YD
Sbjct: 7  YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 93 M 93
           
Sbjct: 67 Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serovar 1/2a (strain ATCC BAA-679 / EGD-e) (taxid: 169963)

>sp|B8DE39|DNAJ_LISMH Chaperone protein DnaJ OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=dnaJ PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          YEVL +   A+  EIK A     K YHPD++   G    F EI   YE L DP+ +A YD
Sbjct: 7  YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 93 M 93
           
Sbjct: 67 Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 4a (strain HCC23) (taxid: 552536)

>sp|G2K045|DNAJ_LISM4 Chaperone protein DnaJ OS=Listeria monocytogenes serotype 1/2a (strain 10403S) GN=dnaJ PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 26/61 (42%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          YEVL +   A+  EIK A     K YHPD++   G    F EI   YE L DP+ +A YD
Sbjct: 7  YEVLGISKSASADEIKKAYRKLSKQYHPDINKEAGADEKFKEISEAYEALSDPQKRAQYD 66

Query: 93 M 93
           
Sbjct: 67 Q 67

Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins.

Listeria monocytogenes serotype 1/2a (strain 10403S) (taxid: 393133)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
255579560	168	chaperone protein DNAj, putative [Ricinu	0.656	0.511	0.535	2e-21
225462060	148	PREDICTED: chaperone protein dnaJ 11, ch	0.809	0.716	0.516	2e-21
15231204	157	chaperone DnaJ-domain containing protein	0.664	0.554	0.557	5e-19
224061637	99	predicted protein [Populus trichocarpa]	0.656	0.868	0.554	9e-19
297834156	157	DNAJ heat shock N-terminal domain-contai	0.664	0.554	0.547	2e-18
356552398	142	PREDICTED: chaperone protein dnaJ 11, ch	0.870	0.802	0.440	3e-18
357460317	161	Chaperone protein dnaJ [Medicago truncat	0.885	0.720	0.447	3e-18
224093380	142	predicted protein [Populus trichocarpa]	0.763	0.704	0.440	7e-17
356566293	151	PREDICTED: chaperone protein dnaJ 11, ch	0.938	0.814	0.420	1e-16
118487648	171	unknown [Populus trichocarpa]	0.656	0.502	0.495	6e-16

>gi|255579560|ref|XP_002530622.1| chaperone protein DNAj, putative [Ricinus communis] gi|223529832|gb|EEF31765.1| chaperone protein DNAj, putative [Ricinus communis]

 Score =  107 bits (267), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 53/99 (53%), Positives = 69/99 (69%), Gaps = 13/99 (13%)

Query: 39  SLYEVLRVEPKATISEIKTA-----KVYHPD------LSGNGRDFTEIHNTYETLLDPKA 87
           SLYE+LR++  A++ EIKTA     K+YHPD      +  +GRDF EIHN YETL DP A
Sbjct: 72  SLYEILRIKRTASLMEIKTAYRSLAKLYHPDAAVREDVETDGRDFMEIHNAYETLSDPAA 131

Query: 88  KAVYDMSLVSRRRTRTTSFGCSGRSGFHPTRRWETDQCW 126
           +A+YD+SL +  R R  + G +G  G++PTRRWETDQCW
Sbjct: 132 RALYDLSLDAASRRRRPAVGFTG--GYYPTRRWETDQCW 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225462060|ref|XP_002275924.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic [Vitis vinifera] gi|296090000|emb|CBI39819.3| unnamed protein product [Vitis vinifera]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/120 (51%), Positives = 77/120 (64%), Gaps = 14/120 (11%)

Query: 20  RSPRAVSVEMPVMALGTRGSLYEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRD 71
           R+P   S++  V A     SLYEVLRV+  A+ +EIKTA     K+YHPD S    +GR+
Sbjct: 30  RNPCHASMQTLVEATRKPSSLYEVLRVKQTASPTEIKTAYRSLAKMYHPDASPVDSDGRN 89

Query: 72  FTEIHNTYETLLDPKAKAVYDMSLVSRRRTRTTSFGCS-----GRSGFHPTRRWETDQCW 126
           F +IHN YETL DP A+AVYD+SL S  R R  ++ CS     GRS  + TRRWETDQCW
Sbjct: 90  FIQIHNAYETLSDPAARAVYDLSLGSTGR-RPYAYACSSGGVRGRSAHYSTRRWETDQCW 148

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15231204|ref|NP_187939.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana] gi|9294537|dbj|BAB02800.1| DnaJ-like protein [Arabidopsis thaliana] gi|21592683|gb|AAM64632.1| DnaJ protein, putative [Arabidopsis thaliana] gi|32815917|gb|AAP88343.1| At3g13310 [Arabidopsis thaliana] gi|332641811|gb|AEE75332.1| chaperone DnaJ-domain containing protein [Arabidopsis thaliana]

 Score = 99.0 bits (245), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 53/95 (55%), Positives = 64/95 (67%), Gaps = 8/95 (8%)

Query: 39  SLYEVLRVEPKATISEIKTA-----KVYHPDLS-GNGRDFTEIHNTYETLLDPKAKAVYD 92
           SLYE+L+V   A+++EIKTA     KVYHPD S  +GRDF EIH  Y TL DP  +A+YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 93  MSL-VSRRRTRTTSFGCSGRSGFHPTRRWETDQCW 126
            +L V RRR    + G SGR  +  TRRWETDQCW
Sbjct: 124 STLRVPRRRVHAGAMGRSGRV-YATTRRWETDQCW 157

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224061637|ref|XP_002300579.1| predicted protein [Populus trichocarpa] gi|222847837|gb|EEE85384.1| predicted protein [Populus trichocarpa]

 Score = 98.2 bits (243), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 56/101 (55%), Positives = 63/101 (62%), Gaps = 15/101 (14%)

Query: 39  SLYEVLRVEPKATISEIKTA-----KVYHPDL-------SGNGRDFTEIHNTYETLLDPK 86
           SLYE+LRV P A+  EIKTA     KVYHPD           G DF EIHN YETL DP 
Sbjct: 1   SLYEILRVNPTASQVEIKTAYRSLAKVYHPDAMLDRDDEPSEGVDFIEIHNAYETLSDPA 60

Query: 87  AKAVYDMSL-VSRRRTRTTSFGCSGRSGFHPTRRWETDQCW 126
           A+AVYDMSL  + R     + G SG  G++ TRRWETDQCW
Sbjct: 61  ARAVYDMSLSAAARDFYRRAVGYSG--GYYTTRRWETDQCW 99

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297834156|ref|XP_002884960.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297330800|gb|EFH61219.1| DNAJ heat shock N-terminal domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 52/95 (54%), Positives = 63/95 (66%), Gaps = 8/95 (8%)

Query: 39  SLYEVLRVEPKATISEIKTA-----KVYHPDLS-GNGRDFTEIHNTYETLLDPKAKAVYD 92
           SLYE+L+V   A+++EIKTA     KVYHPD S  +GRDF EIH  Y TL DP  +A+YD
Sbjct: 64  SLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDGRDFMEIHKAYATLADPTTRAIYD 123

Query: 93  MSL-VSRRRTRTTSFGCSGRSGFHPTRRWETDQCW 126
            +L   RRR    + G SGR  +  TRRWETDQCW
Sbjct: 124 STLRAPRRRVHAGAMGRSGRV-YTTTRRWETDQCW 157

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552398|ref|XP_003544555.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 59/134 (44%), Positives = 80/134 (59%), Gaps = 20/134 (14%)

Query: 12  IAASGRNKRSPRAVSVE-MPVMALGTR--GSLYEVLRVEPKATISEIKTA-----KVYHP 63
           +  +GR  R P  +S+      A+ +R   SLYEVLR++  A+  EIK+A     KVYHP
Sbjct: 10  LTGAGRTLRPPFRISIRAFTATAIDSRRAASLYEVLRIKQNASAVEIKSAYRNLAKVYHP 69

Query: 64  DLS-----GNGRDFTEIHNTYETLLDPKAKAVYDMSLVSRRRTRTTSFGC-----SGRSG 113
           D +      + RDF EIH+ YETL DP A+A+YD+SL++  R    SF       +G SG
Sbjct: 70  DSALRRSESDERDFIEIHDAYETLSDPSARALYDLSLMA-ARDDNRSFSSLVAAPNGSSG 128

Query: 114 F-HPTRRWETDQCW 126
           F + TR+WETDQCW
Sbjct: 129 FYYQTRKWETDQCW 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357460317|ref|XP_003600440.1| Chaperone protein dnaJ [Medicago truncatula] gi|358349362|ref|XP_003638707.1| Chaperone protein dnaJ [Medicago truncatula] gi|355489488|gb|AES70691.1| Chaperone protein dnaJ [Medicago truncatula] gi|355504642|gb|AES85845.1| Chaperone protein dnaJ [Medicago truncatula] gi|388517361|gb|AFK46742.1| unknown [Medicago truncatula]

 Score = 96.3 bits (238), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 60/134 (44%), Positives = 75/134 (55%), Gaps = 18/134 (13%)

Query: 11  FIAASGRNKRSPRAVSVEMPVMALGTR---GSLYEVLRVEPKATISEIKTA-----KVYH 62
           FIA    N  + R +S+     A+ TR    SLYEVLR+ P A+  EIK+A     KVYH
Sbjct: 28  FIAKPSSNISNRRRISIRAVTAAVETRRPATSLYEVLRLNPGASAMEIKSAYRSLAKVYH 87

Query: 63  PDLSG------NGRDFTEIHNTYETLLDPKAKAVYDMSLV---SRRRTRTTSFGCSGR-S 112
           PD +       N  DF EI N YETL DP ++ +YD+SL+    R R  T +     R S
Sbjct: 88  PDAAARRLQECNDGDFIEIRNAYETLSDPSSRQIYDLSLMVHGGRNRRFTAAPVMQKRNS 147

Query: 113 GFHPTRRWETDQCW 126
           GF+  RRWETDQCW
Sbjct: 148 GFYTNRRWETDQCW 161

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093380|ref|XP_002309904.1| predicted protein [Populus trichocarpa] gi|222852807|gb|EEE90354.1| predicted protein [Populus trichocarpa]

 Score = 92.0 bits (227), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 56/127 (44%), Positives = 70/127 (55%), Gaps = 27/127 (21%)

Query: 23  RAVSVEMPVMALGTRG----------SLYEVLRVEPKATISEIK-----TAKVYHPDLSG 67
           R VS++  V  L              SLYE+L+V+  A+++EIK      AKVYHPD+SG
Sbjct: 20  RGVSIKAAVSTLAAESFRVDPGRKSLSLYEILQVKRTASLTEIKGAFRSLAKVYHPDVSG 79

Query: 68  -------NGRDFTEIHNTYETLLDPKAKAVYDMSL-VSRRRTRTTSFGCSGRSGFHPTRR 119
                  +G DF EI N YETL DP A+A+YD+SL  S  R R   F      G+   RR
Sbjct: 80  SDGGEQLDGLDFVEICNAYETLSDPAARAMYDLSLGYSSSRKRPVRFS----GGYSLNRR 135

Query: 120 WETDQCW 126
           WETDQCW
Sbjct: 136 WETDQCW 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356566293|ref|XP_003551367.1| PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Glycine max]

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 83/145 (57%), Gaps = 22/145 (15%)

Query: 3   AAPLLLFDFIAASGRNKRSPRAVSVE-MPVMALGTR---GSLYEVLRVEPKATISEIKTA 58
           AA  +   F ++  R+   PR  SV  +   A+ T+    SLYEVLRVE  A+ +EIK+A
Sbjct: 8   AAGGIPLSFSSSVDRSASFPRRSSVRAVAAEAVDTQRPAASLYEVLRVERDASPTEIKSA 67

Query: 59  -----KVYHPDLS--------GNGRDFTEIHNTYETLLDPKAKAVYDMSLVS----RRRT 101
                K+YHPD +        G+G DF ++ N YETL DP A+A+YD +L +    R R 
Sbjct: 68  YRSLAKLYHPDAAVQRSPETDGDG-DFIQLRNAYETLSDPSARAMYDRTLAAAHGGRHRR 126

Query: 102 RTTSFGCSGRSGFHPTRRWETDQCW 126
            +TS   +  S F+ TRRWETDQCW
Sbjct: 127 FSTSLSRNHSSAFYTTRRWETDQCW 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118487648|gb|ABK95649.1| unknown [Populus trichocarpa]

 Score = 89.0 bits (219), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 63/105 (60%), Gaps = 19/105 (18%)

Query: 39  SLYEVLRVEPKATISEIKTA-----KVYHPDL-----------SGNGRDFTEIHNTYETL 82
           SLY+VLRV P A+  EIK+A     K+YHPD              +G DF EIH+ YETL
Sbjct: 69  SLYDVLRVNPAASQVEIKSAYRSLAKIYHPDAFLSHDRDHDDEQSDGGDFIEIHSAYETL 128

Query: 83  LDPKAKAVYDMSLVSRRRT-RTTSFGCSGRSGFHPTRRWETDQCW 126
            DP A+AVYD+SL +  R     + G SG  G + TRRWETDQCW
Sbjct: 129 SDPTARAVYDLSLSAAARCFYRRAAGYSG--GDYTTRRWETDQCW 171

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	131
TAIR|locus:2088100	157	AT3G13310 [Arabidopsis thalian	0.816	0.681	0.427	1.6e-17
TAIR|locus:2827820	160	AT2G17880 "AT2G17880" [Arabido	0.625	0.512	0.363	1.1e-09
TAIR|locus:2135159	161	J11 "AT4G36040" [Arabidopsis t	0.770	0.627	0.330	1.8e-09
FB|FBgn0032474	389	DnaJ-H "DnaJ homolog" [Drosoph	0.412	0.138	0.466	2.6e-06
TAIR|locus:2052426	344	AT2G42750 [Arabidopsis thalian	0.396	0.151	0.459	7.2e-06
POMBASE|SPCC830.07c	379	psi1 "DNAJ domain protein, inv	0.404	0.139	0.440	1.4e-05
UNIPROTKB|Q5ZJV3	397	DNAJA1 "Uncharacterized protei	0.396	0.130	0.448	1.6e-05
UNIPROTKB|A6QM13	250	DNAJA1 "DnaJ homolog subfamily	0.396	0.208	0.448	1.8e-05
GENEDB_PFALCIPARUM|PF11_0099	540	PF11_0099 "heat shock protein	0.435	0.105	0.437	1.9e-05
UNIPROTKB|Q8IIR6	540	PF11_0099 "Heat shock protein	0.435	0.105	0.437	1.9e-05

TAIR|locus:2088100 AT3G13310 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 1.6e-17, P = 1.6e-17
 Identities = 50/117 (42%), Positives = 63/117 (53%)

Query:    19 KRSPRAVSVEMPVMALGTR---GSLYEVLRVEPKATISEIKTA-----KVYHPDLS-GNG 69
             K S + ++ E P +    R    SLYE+L+V   A+++EIKTA     KVYHPD S  +G
Sbjct:    42 KASAQTLNAE-PAVTESVRRRVSSLYELLKVNETASLTEIKTAYRSLAKVYHPDASESDG 100

Query:    70 RDFTEIHNTYETLLDPKAKAVYDMSLVXXXXXXXXXXXXXXXXXXHPTRRWETDQCW 126
             RDF EIH  Y TL DP  +A+YD +L                     TRRWETDQCW
Sbjct:   101 RDFMEIHKAYATLADPTTRAIYDSTLRVPRRRVHAGAMGRSGRVYATTRRWETDQCW 157

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

TAIR|locus:2827820 AT2G17880 "AT2G17880" [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 36/99 (36%), Positives = 49/99 (49%)

Query:    39 SLYEVLRVEPKATISEIKTA-----KVYHPDLSGNGRD------FTEIHNTYETLLDPKA 87
             SLYE+L +   +T  EIK+A     ++ HPD++ N RD      F +IH  Y TL DP+ 
Sbjct:    68 SLYEILEIPVGSTSQEIKSAYRRLARICHPDVARNSRDNSSADDFMKIHAAYCTLSDPEK 127

Query:    88 KAVYDMSLVXXXXXXXXXXXXXXXXXXHPTRRWETDQCW 126
             +AVYD   +                  +  R WETDQCW
Sbjct:   128 RAVYDRRTLLRSRPLTAGYGS------YGGRNWETDQCW 160

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

TAIR|locus:2135159 J11 "AT4G36040" [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 1.8e-09, P = 1.8e-09
 Identities = 39/118 (33%), Positives = 55/118 (46%)

Query:    21 SPRAVSVEMPVMALGTRGSLYEVLRVEPKATISEIKTA-----KVYHPDLSGNGR----- 70
             SPR   +  P        SLY+VL V   AT  +IK+A     ++ HPD++G  R     
Sbjct:    49 SPRLHQI--PRRLTTVPASLYDVLEVPLGATSQDIKSAYRRLARICHPDVAGTDRTSSSS 106

Query:    71 --DFTEIHNTYETLLDPKAKAVYDMSLVXXXXXXXXXXXXXXXXXXHPTRRWETDQCW 126
               +F +IH  Y TL DP+ ++VYD  ++                  +  R WETDQCW
Sbjct:   107 ADEFMKIHAAYCTLSDPEKRSVYDRRMLRRSRPLTVGTSGLGS---YVGRNWETDQCW 161

GO:0006457 "protein folding" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0009536 "plastid" evidence=IDA

FB|FBgn0032474 DnaJ-H "DnaJ homolog" [Drosophila melanogaster (taxid:7227)]

 Score = 116 (45.9 bits), Expect = 2.6e-06, P = 2.6e-06
 Identities = 28/60 (46%), Positives = 36/60 (60%)

Query:    39 SLYEVLRVEPKATISEIKT-----AKVYHPDLSGNGRD-FTEIHNTYETLLDPKAKAVYD 92
             +LY+VLRV P AT  EIK      AK +HPD + +  D F EI   YE L DP+ + +YD
Sbjct:     5 NLYDVLRVAPDATDEEIKKNYRKLAKEFHPDKNPDAGDKFKEISFAYEVLSDPEKRRIYD 64

GO:0051082 "unfolded protein binding" evidence=ISS

GO:0006457 "protein folding" evidence=ISS

GO:0031072 "heat shock protein binding" evidence=IEA

TAIR|locus:2052426 AT2G42750 [Arabidopsis thaliana (taxid:3702)]

 Score = 97 (39.2 bits), Expect = 7.2e-06, Sum P(2) = 7.2e-06
 Identities = 28/61 (45%), Positives = 33/61 (54%)

Query:    41 YEVLRVEPKATISEIKTA-----KVYHPDLSGNGRDFTE----IHNTYETLLDPKAKAVY 91
             Y VL + P AT  EIK A     K  HPDLSGN  + T     I++ YE L DP  + VY
Sbjct:    78 YAVLGLLPDATQEEIKKAYYNCMKSCHPDLSGNDPETTNFCMFINDIYEILSDPVQRMVY 137

Query:    92 D 92
             D
Sbjct:   138 D 138

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

POMBASE|SPCC830.07c psi1 "DNAJ domain protein, involved in translation initiation Psi1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 109 (43.4 bits), Expect = 1.4e-05, P = 1.4e-05
 Identities = 26/59 (44%), Positives = 37/59 (62%)

Query:    40 LYEVLRVEPKATISEIKTA--KV---YHPDLSGNG-RDFTEIHNTYETLLDPKAKAVYD 92
             LY+ L V P+A+ +E+K A  K+   YHPD + NG + F EI   YE L DP+ + +YD
Sbjct:     7 LYDCLEVRPEASEAELKKAYRKLALKYHPDKNPNGEKKFKEISLAYEVLSDPQRRKLYD 65

GO:0002183 "cytoplasmic translational initiation" evidence=NAS

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006413 "translational initiation" evidence=ISO

GO:0006457 "protein folding" evidence=IEA

GO:0030544 "Hsp70 protein binding" evidence=ISM

GO:0034605 "cellular response to heat" evidence=IEP

GO:0051082 "unfolded protein binding" evidence=ISO

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISO

UNIPROTKB|Q5ZJV3 DNAJA1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 109 (43.4 bits), Expect = 1.6e-05, P = 1.6e-05
 Identities = 26/58 (44%), Positives = 34/58 (58%)

Query:    41 YEVLRVEPKATISEIKTA--KV---YHPDLSGN-GRDFTEIHNTYETLLDPKAKAVYD 92
             Y+VL V P A+  E+K A  K+   YHPD + N G  F +I   YE L DPK + +YD
Sbjct:     8 YDVLGVSPNASAEELKKAYRKLALKYHPDKNHNEGEKFKQISQAYEVLSDPKKRDLYD 65

GO:0005524 "ATP binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0009408 "response to heat" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=ISS

GO:0007283 "spermatogenesis" evidence=ISS

GO:0030317 "sperm motility" evidence=ISS

GO:0030521 "androgen receptor signaling pathway" evidence=ISS

UNIPROTKB|A6QM13 DNAJA1 "DnaJ homolog subfamily A member 1" [Bos taurus (taxid:9913)]

 Score = 105 (42.0 bits), Expect = 1.8e-05, P = 1.8e-05
 Identities = 26/58 (44%), Positives = 34/58 (58%)

Query:    41 YEVLRVEPKATISEIKTA--KV---YHPDLSGN-GRDFTEIHNTYETLLDPKAKAVYD 92
             Y+VL V+P AT  E+K A  K+   YHPD + N G  F +I   YE L D K + +YD
Sbjct:     8 YDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 65

GO:0050750 "low-density lipoprotein particle receptor binding" evidence=IEA

GO:0030521 "androgen receptor signaling pathway" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0007283 "spermatogenesis" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0031072 "heat shock protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GENEDB_PFALCIPARUM|PF11_0099 PF11_0099 "heat shock protein DnaJ homologue Pfj2" [Plasmodium falciparum (taxid:5833)]

 Score = 110 (43.8 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 28/64 (43%), Positives = 39/64 (60%)

Query:    37 RG-SLYEVLRVEPKATISEI-----KTAKVYHPDLSGNG-RDFTEIHNTYETLLDPKAKA 89
             RG   Y+ L V+  AT  +I     + AK YHPD++ +  +DF EI N YETL DP+ + 
Sbjct:    32 RGMDYYKRLGVKRNATKEDISKAYRQLAKEYHPDIAPDKEKDFIEIANAYETLSDPEKRK 91

Query:    90 VYDM 93
             +YDM
Sbjct:    92 MYDM 95

GO:0009408 "response to heat" evidence=ISS

GO:0020011 "apicoplast" evidence=ISS

UNIPROTKB|Q8IIR6 PF11_0099 "Heat shock protein DnaJ homologue Pfj2" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 110 (43.8 bits), Expect = 1.9e-05, P = 1.9e-05
 Identities = 28/64 (43%), Positives = 39/64 (60%)

Query:    37 RG-SLYEVLRVEPKATISEI-----KTAKVYHPDLSGNG-RDFTEIHNTYETLLDPKAKA 89
             RG   Y+ L V+  AT  +I     + AK YHPD++ +  +DF EI N YETL DP+ + 
Sbjct:    32 RGMDYYKRLGVKRNATKEDISKAYRQLAKEYHPDIAPDKEKDFIEIANAYETLSDPEKRK 91

Query:    90 VYDM 93
             +YDM
Sbjct:    92 MYDM 95

GO:0009408 "response to heat" evidence=ISS

GO:0020011 "apicoplast" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00033470001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (148 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00017724001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (538 aa)			•						0.498
	GSVIVG00022013001	SubName- Full=Chromosome chr18 scaffold_24, whole genome shotgun sequence; (667 aa)			•						0.497
	GSVIVG00022731001	SubName- Full=Chromosome chr14 scaffold_27, whole genome shotgun sequence; (655 aa)			•						0.495
	GSVIVG00006687001	SubName- Full=Chromosome chr2 scaffold_176, whole genome shotgun sequence; (667 aa)			•						0.495
	GSVIVG00001482001	SubName- Full=Chromosome chr3 scaffold_117, whole genome shotgun sequence; (103 aa)			•						0.495
	GSVIVG00037232001	SubName- Full=Chromosome chr16 scaffold_86, whole genome shotgun sequence; (658 aa)			•						0.494
	GSVIVG00017185001	SubName- Full=Chromosome chr11 scaffold_14, whole genome shotgun sequence; (482 aa)			•						0.494
	GSVIVG00019978001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (574 aa)			•						0.490
	GSVIVG00024357001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (652 aa)			•						0.489
	GSVIVG00018506001	SubName- Full=Chromosome chr13 scaffold_17, whole genome shotgun sequence; (649 aa)			•						0.489

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	131
pfam00226	63	pfam00226, DnaJ, DnaJ domain	3e-12
smart00271	60	smart00271, DnaJ, DnaJ molecular chaperone homolog	2e-09
COG0484	371	COG0484, DnaJ, DnaJ-class molecular chaperone with	3e-09
PTZ00037	421	PTZ00037, PTZ00037, DnaJ_C chaperone protein; Prov	1e-08
TIGR02349	354	TIGR02349, DnaJ_bact, chaperone protein DnaJ	4e-08
cd06257	55	cd06257, DnaJ, DnaJ domain or J-domain	4e-08
PRK14277	386	PRK14277, PRK14277, chaperone protein DnaJ; Provis	5e-08
PRK14280	376	PRK14280, PRK14280, chaperone protein DnaJ; Provis	9e-08
PRK14276	380	PRK14276, PRK14276, chaperone protein DnaJ; Provis	1e-07
PRK14290	365	PRK14290, PRK14290, chaperone protein DnaJ; Provis	3e-07
PRK14291	382	PRK14291, PRK14291, chaperone protein DnaJ; Provis	5e-07
PRK14300	372	PRK14300, PRK14300, chaperone protein DnaJ; Provis	1e-06
TIGR03835	871	TIGR03835, termin_org_DnaJ, terminal organelle ass	1e-06
PRK14282	369	PRK14282, PRK14282, chaperone protein DnaJ; Provis	2e-06
PRK14297	380	PRK14297, PRK14297, chaperone protein DnaJ; Provis	2e-06
PRK14296	372	PRK14296, PRK14296, chaperone protein DnaJ; Provis	4e-06
PRK14278	378	PRK14278, PRK14278, chaperone protein DnaJ; Provis	4e-06
PRK14287	371	PRK14287, PRK14287, chaperone protein DnaJ; Provis	5e-06
PRK10767	371	PRK10767, PRK10767, chaperone protein DnaJ; Provis	2e-05
PRK14289	386	PRK14289, PRK14289, chaperone protein DnaJ; Provis	2e-05
PRK10266	306	PRK10266, PRK10266, curved DNA-binding protein Cbp	4e-05
PRK14293	374	PRK14293, PRK14293, chaperone protein DnaJ; Provis	4e-05
COG2214	237	COG2214, CbpA, DnaJ-class molecular chaperone [Pos	6e-05
PRK14284	391	PRK14284, PRK14284, chaperone protein DnaJ; Provis	7e-05
PRK14283	378	PRK14283, PRK14283, chaperone protein DnaJ; Provis	1e-04
PRK14294	366	PRK14294, PRK14294, chaperone protein DnaJ; Provis	1e-04
PRK14285	365	PRK14285, PRK14285, chaperone protein DnaJ; Provis	4e-04
PRK14286	372	PRK14286, PRK14286, chaperone protein DnaJ; Provis	5e-04
PRK14298	377	PRK14298, PRK14298, chaperone protein DnaJ; Provis	6e-04
PRK14299	291	PRK14299, PRK14299, chaperone protein DnaJ; Provis	0.001
PRK14295	389	PRK14295, PRK14295, chaperone protein DnaJ; Provis	0.001
PRK14292	371	PRK14292, PRK14292, chaperone protein DnaJ; Provis	0.001
PRK14281	397	PRK14281, PRK14281, chaperone protein DnaJ; Provis	0.002
PRK14301	373	PRK14301, PRK14301, chaperone protein DnaJ; Provis	0.003

>gnl|CDD|215804 pfam00226, DnaJ, DnaJ domain

 Score = 57.2 bits (139), Expect = 3e-12
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 9/62 (14%)

Query: 40 LYEVLRVEPKATISEIKTA-----KVYHPDLSGNG----RDFTEIHNTYETLLDPKAKAV 90
           YE+L V   A+  EIK A       YHPD +         F EI+  YE L DP+ +A+
Sbjct: 2  YYEILGVPRDASDEEIKKAYRKLALKYHPDKNPGDPAAEEKFKEINEAYEVLSDPEKRAI 61

Query: 91 YD 92
          YD
Sbjct: 62 YD 63

DnaJ domains (J-domains) are associated with hsp70 heat-shock system and it is thought that this domain mediates the interaction. DnaJ-domain is therefore part of a chaperone (protein folding) system. The T-antigens, although not in Prosite are confirmed as DnaJ containing domains from literature. Length = 63

>gnl|CDD|197617 smart00271, DnaJ, DnaJ molecular chaperone homology domain

 Score = 49.9 bits (120), Expect = 2e-09
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 39 SLYEVLRVEPKATISEIKTA-----KVYHPDLSGNG-----RDFTEIHNTYETLLDPK 86
            YE+L V   A++ EIK A       YHPD +          F EI+  YE L DP+
Sbjct: 2  DYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE 59

Length = 60

>gnl|CDD|223560 COG0484, DnaJ, DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

 Score = 53.0 bits (128), Expect = 3e-09
 Identities = 25/64 (39%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 39 SLYEVLRVEPKATISEIKTA-----KVYHPDLS----GNGRDFTEIHNTYETLLDPKAKA 89
            YE+L V   A+  EIK A     K YHPD +         F EI+  YE L DP+ +A
Sbjct: 5  DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRA 64

Query: 90 VYDM 93
           YD 
Sbjct: 65 AYDQ 68

Length = 371

>gnl|CDD|240236 PTZ00037, PTZ00037, DnaJ_C chaperone protein; Provisional

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 25/58 (43%), Positives = 31/58 (53%), Gaps = 5/58 (8%)

Query: 40 LYEVLRVEPKATISEIKTAK-----VYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYD 92
          LYEVL +    T SEIK A       +HPD  G+   F EI   YE L DP+ + +YD
Sbjct: 30 LYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYD 87

Length = 421

>gnl|CDD|233829 TIGR02349, DnaJ_bact, chaperone protein DnaJ

 Score = 49.9 bits (120), Expect = 4e-08
 Identities = 25/61 (40%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          YE+L V   A+  EIK A     K YHPD +        F EI+  YE L DP+ +A YD
Sbjct: 3  YEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYD 62

Query: 93 M 93
           
Sbjct: 63 Q 63

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family. Length = 354

>gnl|CDD|99751 cd06257, DnaJ, DnaJ domain or J-domain

 Score = 46.4 bits (111), Expect = 4e-08
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 9/53 (16%)

Query: 41 YEVLRVEPKATISEIK-----TAKVYHPDLSGNG----RDFTEIHNTYETLLD 84
          Y++L V P A+  EIK      A  YHPD + +       F EI+  YE L D
Sbjct: 3  YDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD 55

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification. Length = 55

>gnl|CDD|184599 PRK14277, PRK14277, chaperone protein DnaJ; Provisional

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 9/62 (14%)

Query: 40 LYEVLRVEPKATISEIKTA-----KVYHPDLS-GNG---RDFTEIHNTYETLLDPKAKAV 90
           YE+L V+  AT  EIK A     K YHPDL+ G+    + F EI+  YE L DP+ +A 
Sbjct: 7  YYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQ 66

Query: 91 YD 92
          YD
Sbjct: 67 YD 68

Length = 386

>gnl|CDD|237656 PRK14280, PRK14280, chaperone protein DnaJ; Provisional

 Score = 48.9 bits (117), Expect = 9e-08
 Identities = 26/60 (43%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          YEVL V   A+  EIK A     K YHPD++   G    F EI   YE L D + +A YD
Sbjct: 7  YEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYD 66

Length = 376

>gnl|CDD|237653 PRK14276, PRK14276, chaperone protein DnaJ; Provisional

 Score = 48.5 bits (116), Expect = 1e-07
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 40 LYEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVY 91
           Y+ L V   A+  EIK A     K YHPD++   G    + E+   YETL DP+ +A Y
Sbjct: 6  YYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAY 65

Query: 92 D 92
          D
Sbjct: 66 D 66

Length = 380

>gnl|CDD|172778 PRK14290, PRK14290, chaperone protein DnaJ; Provisional

 Score = 47.2 bits (112), Expect = 3e-07
 Identities = 31/85 (36%), Positives = 42/85 (49%), Gaps = 18/85 (21%)

Query: 41  YEVLRVEPKATISEIKTA-----KVYHPDLS-GNGRD----FTEIHNTYETLLDPKAKAV 90
           Y++L V+  A+  +IK A     K +HPDL  GN  +    F EI   YE L DP+ +  
Sbjct: 6   YKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQ 65

Query: 91  YDMSLVSRRRTRTTSFGCSGRSGFH 115
           YD       +T T  FG  G S F+
Sbjct: 66  YD-------QTGTVDFGAGG-SNFN 82

Length = 365

>gnl|CDD|237661 PRK14291, PRK14291, chaperone protein DnaJ; Provisional

 Score = 46.7 bits (111), Expect = 5e-07
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 8/61 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGNG---RDFTEIHNTYETLLDPKAKAVYD 92
          YE+L V   AT  EIK A     + YHPD + N      F EI+  Y+ L DP+ + +YD
Sbjct: 6  YEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYD 65

Query: 93 M 93
           
Sbjct: 66 Q 66

Length = 382

>gnl|CDD|172788 PRK14300, PRK14300, chaperone protein DnaJ; Provisional

 Score = 45.8 bits (108), Expect = 1e-06
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 41  YEVLRVEPKATISEIKTA-----KVYHPDLSGNG---RDFTEIHNTYETLLDPKAKAVYD 92
           Y++L V   A+ +++K A     K YHPD +      + F EI+  Y+ L D + +A YD
Sbjct: 6   YQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYD 65

Query: 93  MSLVSRRRTRTTSFGCSGRSGFHP 116
                  + + +  G     GFHP
Sbjct: 66  RFGHDAFQNQQSRGGGGNHGGFHP 89

Length = 372

>gnl|CDD|234368 TIGR03835, termin_org_DnaJ, terminal organelle assembly protein TopJ

 Score = 46.0 bits (108), Expect = 1e-06
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 10/61 (16%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
          YEVL ++  A   EIK A     K YHPD      D    F EI+   + L +PK +A Y
Sbjct: 5  YEVLGIDRDADEQEIKKAFRKLAKKYHPD-RNKAPDAASIFAEINEANDVLSNPKKRANY 63

Query: 92 D 92
          D
Sbjct: 64 D 64

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility [Cellular processes, Chemotaxis and motility]. Length = 871

>gnl|CDD|184603 PRK14282, PRK14282, chaperone protein DnaJ; Provisional

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 26/62 (41%), Positives = 31/62 (50%), Gaps = 10/62 (16%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGNGRD-----FTEIHNTYETLLDPKAKAV 90
          YE+L V   AT  EIK A     K +HPD     R      F EI   YE L DP+ +A+
Sbjct: 7  YEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAM 66

Query: 91 YD 92
          YD
Sbjct: 67 YD 68

Length = 369

>gnl|CDD|184611 PRK14297, PRK14297, chaperone protein DnaJ; Provisional

 Score = 44.8 bits (106), Expect = 2e-06
 Identities = 26/61 (42%), Positives = 35/61 (57%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKTA--KV---YHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
          YEVL +E  A+  EIK A  K+   YHPD +   ++    F EI+  Y+ L DP+ KA Y
Sbjct: 7  YEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQY 66

Query: 92 D 92
          D
Sbjct: 67 D 67

Length = 380

>gnl|CDD|237666 PRK14296, PRK14296, chaperone protein DnaJ; Provisional

 Score = 44.2 bits (104), Expect = 4e-06
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDL---SGNGRDFTEIHNTYETLLDPKAKAVYD 92
          YEVL V   A+  EI+ A     K YHPDL           EI+   + LLD   +  YD
Sbjct: 7  YEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYD 66

Length = 372

>gnl|CDD|237654 PRK14278, PRK14278, chaperone protein DnaJ; Provisional

 Score = 44.3 bits (105), Expect = 4e-06
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYD 92
          Y +L V   A+ +EIK A     +  HPD++ +      F EI   YE L DP+ + + D
Sbjct: 6  YGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVD 65

Query: 93 M 93
          +
Sbjct: 66 L 66

Length = 378

>gnl|CDD|237659 PRK14287, PRK14287, chaperone protein DnaJ; Provisional

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSG--NGRD-FTEIHNTYETLLDPKAKAVYD 92
          YEVL V+  A++ E+K A     + YHPD++   +  D F E+   Y+TL DP+ KA YD
Sbjct: 7  YEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYD 66

Length = 371

>gnl|CDD|236757 PRK10767, PRK10767, chaperone protein DnaJ; Provisional

 Score = 42.1 bits (100), Expect = 2e-05
 Identities = 28/63 (44%), Positives = 32/63 (50%), Gaps = 13/63 (20%)

Query: 41 YEVLRVEPKATISEIKTA--KV---YHPDLSGNGRD------FTEIHNTYETLLDPKAKA 89
          YEVL V   A+  EIK A  K+   YHPD   N  D      F EI   YE L DP+ +A
Sbjct: 7  YEVLGVSRNASEDEIKKAYRKLAMKYHPD--RNPGDKEAEEKFKEIKEAYEVLSDPQKRA 64

Query: 90 VYD 92
           YD
Sbjct: 65 AYD 67

Length = 371

>gnl|CDD|237660 PRK14289, PRK14289, chaperone protein DnaJ; Provisional

 Score = 42.1 bits (99), Expect = 2e-05
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKTAK-----VYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
          YEVL V   AT+ EIK A       YHPD +   ++    F E    Y+ L DP  ++ Y
Sbjct: 8  YEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRY 67

Query: 92 D 92
          D
Sbjct: 68 D 68

Length = 386

>gnl|CDD|182347 PRK10266, PRK10266, curved DNA-binding protein CbpA; Provisional

 Score = 41.3 bits (97), Expect = 4e-05
 Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDLSGNG---RDFTEIHNTYETLLDPKAKAVYD 92
          Y ++ V+P   +  IKT     A+ YHPD+S        F E+   +E L D + +A YD
Sbjct: 7  YAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYD 66

Length = 306

>gnl|CDD|237663 PRK14293, PRK14293, chaperone protein DnaJ; Provisional

 Score = 41.1 bits (97), Expect = 4e-05
 Identities = 29/85 (34%), Positives = 39/85 (45%), Gaps = 17/85 (20%)

Query: 38  GSLYEVLRVEPKATISEIKT-----AKVYHPDLS---GNGRDFTEIHNTYETLLDPKAKA 89
              YE+L V   A   E+K      A+ YHPD++   G    F EI+  YE L DP+ +A
Sbjct: 3   ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRA 62

Query: 90  VYDMSLVSRRRTRTTSFGCSGRSGF 114
            YD         +    G SG +GF
Sbjct: 63  RYD---------QFGEAGVSGAAGF 78

Length = 374

>gnl|CDD|225124 COG2214, CbpA, DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

 Score = 40.6 bits (94), Expect = 6e-05
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 39  SLYEVLRVEPKATISEI-----KTAKVYHPDLSGNGRDFTE----IHNT-YETLLDPKAK 88
             YE+L V P A++ EI     K A  YHPD +       E      N  YE L DP+ +
Sbjct: 7   DYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERR 66

Query: 89  AVYDMSLVSRRRTRTTSF 106
           A YD           +  
Sbjct: 67  AEYDKIGADNYFPGKSYR 84

Length = 237

>gnl|CDD|237658 PRK14284, PRK14284, chaperone protein DnaJ; Provisional

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKTA--KV---YHPDL-SGNG---RDFTEIHNTYETLLDPKAKAVY 91
          Y +L V   A+  EIK A  K+   YHPD   G+    + F E+   YE L D + +  Y
Sbjct: 4  YTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESY 63

Query: 92 D 92
          D
Sbjct: 64 D 64

Length = 391

>gnl|CDD|184604 PRK14283, PRK14283, chaperone protein DnaJ; Provisional

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 29/82 (35%), Positives = 35/82 (42%), Gaps = 20/82 (24%)

Query: 41  YEVLRVEPKATISEIKT-----AKVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
           YEVL V+  A   EIK      A+ YHPD+S   G    F EI   Y  L D + +  YD
Sbjct: 8   YEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYD 67

Query: 93  MSLVSRRRTRTTSFGCSGRSGF 114
                        FG +G  GF
Sbjct: 68  ------------QFGHAGMDGF 77

Length = 378

>gnl|CDD|237664 PRK14294, PRK14294, chaperone protein DnaJ; Provisional

 Score = 39.7 bits (93), Expect = 1e-04
 Identities = 23/61 (37%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
          YE+L V   A+  EIK      A  YHPD +   ++    F E    YE L DPK + +Y
Sbjct: 7  YEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIY 66

Query: 92 D 92
          D
Sbjct: 67 D 67

Length = 366

>gnl|CDD|172773 PRK14285, PRK14285, chaperone protein DnaJ; Provisional

 Score = 38.4 bits (89), Expect = 4e-04
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 17/84 (20%)

Query: 41  YEVLRVEPKATISEIKTA--KV---YHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
           YE+L +   A+  EIK A  K+   YHPD +   ++    F E    YE L+D   +A Y
Sbjct: 6   YEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQY 65

Query: 92  DMSLVSRRRTRTTSF-GCSGRSGF 114
           D       R   T+F G  G  GF
Sbjct: 66  D-------RFGHTAFEGGGGFEGF 82

Length = 365

>gnl|CDD|172774 PRK14286, PRK14286, chaperone protein DnaJ; Provisional

 Score = 38.0 bits (88), Expect = 5e-04
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)

Query: 39 SLYEVLRVEPKATISEIKTAK-----VYHPDLSGNGRD----FTEIHNTYETLLDPKAKA 89
          S Y++L V   A   EIK+A       YHPD +   ++    F E    YE L DPK + 
Sbjct: 5  SYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQ 64

Query: 90 VYD 92
           YD
Sbjct: 65 AYD 67

Length = 372

>gnl|CDD|184612 PRK14298, PRK14298, chaperone protein DnaJ; Provisional

 Score = 37.9 bits (88), Expect = 6e-04
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 8/67 (11%)

Query: 34 LGTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLS---GNGRDFTEIHNTYETLLDP 85
          + T    YE+L +   A++ +IK      A  YHPD +        F EI   Y  L D 
Sbjct: 1  MATTRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDA 60

Query: 86 KAKAVYD 92
          + +A YD
Sbjct: 61 EKRAQYD 67

Length = 377

>gnl|CDD|237667 PRK14299, PRK14299, chaperone protein DnaJ; Provisional

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          Y +L V   A+  EIK A     + YHPD++   G    F EI+  Y  L DP+ + +YD
Sbjct: 7  YAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYD 66

Length = 291

>gnl|CDD|237665 PRK14295, PRK14295, chaperone protein DnaJ; Provisional

 Score = 37.5 bits (87), Expect = 0.001
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDLS-GNGR---DFTEIHNTYETLLDPKAKAVY 91
          Y+VL V   AT +EIK      A+ YHPD + G+ +    F EI   Y+ L D K +  Y
Sbjct: 12 YKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEY 71

Query: 92 D 92
          D
Sbjct: 72 D 72

Length = 389

>gnl|CDD|237662 PRK14292, PRK14292, chaperone protein DnaJ; Provisional

 Score = 37.2 bits (86), Expect = 0.001
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKTA--KV---YHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          YE+L V   A+  EIK+A  K+   YHPD +   G    F +I+  Y  L D + +A YD
Sbjct: 5  YELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYD 64

Length = 371

>gnl|CDD|237657 PRK14281, PRK14281, chaperone protein DnaJ; Provisional

 Score = 36.3 bits (84), Expect = 0.002
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKTA--KV---YHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
          YEVL V   A   EIK A  K+   YHPD + + ++    F E++  YE L +   +  Y
Sbjct: 6  YEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRY 65

Query: 92 D 92
          D
Sbjct: 66 D 66

Length = 397

>gnl|CDD|237668 PRK14301, PRK14301, chaperone protein DnaJ; Provisional

 Score = 35.9 bits (83), Expect = 0.003
 Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKTA--KV---YHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
          YEVL V   A+  EIK A  K+   YHPD + +  +    F E    YE L D + +A Y
Sbjct: 7  YEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARY 66

Query: 92 D 92
          D
Sbjct: 67 D 67

Length = 373

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	131
COG0484	371	DnaJ DnaJ-class molecular chaperone with C-termina	99.84
KOG0713	336	consensus Molecular chaperone (DnaJ superfamily) [	99.8
KOG0712	337	consensus Molecular chaperone (DnaJ superfamily) [	99.72
PRK14288	369	chaperone protein DnaJ; Provisional	99.71
PRK14296	372	chaperone protein DnaJ; Provisional	99.69
PTZ00037	421	DnaJ_C chaperone protein; Provisional	99.69
PRK14286	372	chaperone protein DnaJ; Provisional	99.68
PRK14279	392	chaperone protein DnaJ; Provisional	99.66
PRK14298	377	chaperone protein DnaJ; Provisional	99.64
PRK14282	369	chaperone protein DnaJ; Provisional	99.64
PRK14287	371	chaperone protein DnaJ; Provisional	99.63
PRK14276	380	chaperone protein DnaJ; Provisional	99.63
PRK14283	378	chaperone protein DnaJ; Provisional	99.63
PRK14277	386	chaperone protein DnaJ; Provisional	99.62
PRK14291	382	chaperone protein DnaJ; Provisional	99.62
PRK14285	365	chaperone protein DnaJ; Provisional	99.61
PF00226	64	DnaJ: DnaJ domain; InterPro: IPR001623 The prokary	99.61
PRK14280	376	chaperone protein DnaJ; Provisional	99.61
PRK14299	291	chaperone protein DnaJ; Provisional	99.61
PRK14284	391	chaperone protein DnaJ; Provisional	99.61
PRK14297	380	chaperone protein DnaJ; Provisional	99.6
PRK14294	366	chaperone protein DnaJ; Provisional	99.6
PRK14278	378	chaperone protein DnaJ; Provisional	99.6
PRK14295	389	chaperone protein DnaJ; Provisional	99.6
PRK14301	373	chaperone protein DnaJ; Provisional	99.6
KOG0715	288	consensus Molecular chaperone (DnaJ superfamily) [	99.59
KOG0691	296	consensus Molecular chaperone (DnaJ superfamily) [	99.59
PRK14281	397	chaperone protein DnaJ; Provisional	99.58
PRK10767	371	chaperone protein DnaJ; Provisional	99.58
KOG0716	279	consensus Molecular chaperone (DnaJ superfamily) [	99.57
KOG0717	508	consensus Molecular chaperone (DnaJ superfamily) [	99.56
TIGR02349	354	DnaJ_bact chaperone protein DnaJ. This model repre	99.56
PRK14292	371	chaperone protein DnaJ; Provisional	99.55
PRK14290	365	chaperone protein DnaJ; Provisional	99.55
PRK14300	372	chaperone protein DnaJ; Provisional	99.55
PRK14289	386	chaperone protein DnaJ; Provisional	99.54
PRK14293	374	chaperone protein DnaJ; Provisional	99.54
PRK10266	306	curved DNA-binding protein CbpA; Provisional	99.52
KOG0718	546	consensus Molecular chaperone (DnaJ superfamily) [	99.49
PTZ00341	1136	Ring-infected erythrocyte surface antigen; Provisi	99.48
smart00271	60	DnaJ DnaJ molecular chaperone homology domain.	99.47
KOG0719	264	consensus Molecular chaperone (DnaJ superfamily) [	99.45
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.45
PHA03102	153	Small T antigen; Reviewed	99.45
cd06257	55	DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat sho	99.41
COG2214	237	CbpA DnaJ-class molecular chaperone [Posttranslati	99.37
KOG0721	230	consensus Molecular chaperone (DnaJ superfamily) [	99.34
TIGR03835	871	termin_org_DnaJ terminal organelle assembly protei	99.34
PRK01356	166	hscB co-chaperone HscB; Provisional	99.33
PRK05014	171	hscB co-chaperone HscB; Provisional	99.29
PRK00294	173	hscB co-chaperone HscB; Provisional	99.23
PRK03578	176	hscB co-chaperone HscB; Provisional	99.23
KOG0720	490	consensus Molecular chaperone (DnaJ superfamily) [	99.13
PTZ00100	116	DnaJ chaperone protein; Provisional	99.07
KOG0722	329	consensus Molecular chaperone (DnaJ superfamily) [	99.07
KOG0714	306	consensus Molecular chaperone (DnaJ superfamily) [	98.99
PHA02624	647	large T antigen; Provisional	98.95
PRK01773	173	hscB co-chaperone HscB; Provisional	98.94
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.91
COG5407	610	SEC63 Preprotein translocase subunit Sec63 [Intrac	98.75
PRK09430	267	djlA Dna-J like membrane chaperone protein; Provis	98.74
COG5269	379	ZUO1 Ribosome-associated chaperone zuotin [Transla	98.65
TIGR00714	157	hscB Fe-S protein assembly co-chaperone HscB. This	98.5
KOG1150	250	consensus Predicted molecular chaperone (DnaJ supe	98.44
KOG0568	342	consensus Molecular chaperone (DnaJ superfamily) [	97.89
KOG0723	112	consensus Molecular chaperone (DnaJ superfamily) [	97.67
KOG3192	168	consensus Mitochondrial J-type chaperone [Posttran	97.61
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.46
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	93.69
PF03656	127	Pam16: Pam16; InterPro: IPR005341 The Pam16 protei	90.73
COG1076	174	DjlA DnaJ-domain-containing proteins 1 [Posttransl	89.75

>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]

Probab=99.84  E-value=2.1e-21  Score=158.69  Aligned_cols=64  Identities=39%  Similarity=0.591  Sum_probs=59.8

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCC----ChHHHHHHHHHHHHcCChhHHHHHHhhcccccC
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG----NGRDFTEIHNTYETLLDPKAKAVYDMSLVSRRR  100 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~----~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~  100 (131)
                      .+|||+||||+++|+.+|||+     |++||||+|+    ++++|++|++||+||+||++|+.||+++.....
T Consensus         3 ~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~   75 (371)
T COG0484           3 KRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGDKEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK   75 (371)
T ss_pred             ccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence            679999999999999999999     9999999999    357999999999999999999999999988654

>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.80  E-value=5.3e-20  Score=147.98  Aligned_cols=67  Identities=34%  Similarity=0.515  Sum_probs=61.6

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh----HHHHHHHHHHHHcCChhHHHHHHhhcccccCCC
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG----RDFTEIHNTYETLLDPKAKAVYDMSLVSRRRTR  102 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~----~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~~~  102 (131)
                      ..+|||+||||+++|+..|||+     |+++|||+|+++    +.|++|+.||+||+||++|+.||.+|.++....
T Consensus        14 ~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpddp~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~~~   89 (336)
T KOG0713|consen   14 AGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDDPNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLKDE   89 (336)
T ss_pred             cCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhccc
Confidence            4689999999999999999999     999999999954    699999999999999999999999998766543

>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.72  E-value=5.8e-18  Score=137.05  Aligned_cols=64  Identities=38%  Similarity=0.621  Sum_probs=59.9

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh-HHHHHHHHHHHHcCChhHHHHHHhhcccccC
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG-RDFTEIHNTYETLLDPKAKAVYDMSLVSRRR  100 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~-~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~  100 (131)
                      +..||+||||+++|+.+|||+     ++++|||||++. ++|++|+.||+||+||++|++||+++.++.+
T Consensus         3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~   72 (337)
T KOG0712|consen    3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPDAGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQ   72 (337)
T ss_pred             ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhc
Confidence            568999999999999999999     999999999965 7999999999999999999999999988663

>PRK14288 chaperone protein DnaJ; Provisional

Probab=99.71  E-value=1.1e-17  Score=137.31  Aligned_cols=61  Identities=36%  Similarity=0.501  Sum_probs=56.7

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCC----ChHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG----NGRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~----~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ..|||+||||+++|+.+|||+     |+++|||+++    ++++|++|++||+||+||++|+.||+++..
T Consensus         2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~   71 (369)
T PRK14288          2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGDKEAEEKFKLINEAYGVLSDEKKRALYDRYGKK   71 (369)
T ss_pred             CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHHhccHHHHHHHHHhccc
Confidence            369999999999999999999     9999999987    347999999999999999999999998865

>PRK14296 chaperone protein DnaJ; Provisional

Probab=99.69  E-value=2.2e-17  Score=135.71  Aligned_cols=61  Identities=36%  Similarity=0.525  Sum_probs=56.6

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCC---ChHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG---NGRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~---~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ..|||+||||+++|+.+|||+     |+++|||+++   ++++|++|++||+||+||++|+.||.++..
T Consensus         3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~   71 (372)
T PRK14296          3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKSPDAHDKMVEINEAADVLLDKDKRKQYDQFGHA   71 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHhcCHHHhhhhhhccch
Confidence            469999999999999999999     9999999986   347999999999999999999999998865

>PTZ00037 DnaJ_C chaperone protein; Provisional

Probab=99.69  E-value=2.4e-17  Score=137.50  Aligned_cols=62  Identities=40%  Similarity=0.591  Sum_probs=58.5

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     |+++|||++++.++|++|++||+||+||.+|+.||.++..+
T Consensus        27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~~e~F~~i~~AYevLsD~~kR~~YD~~G~~~   93 (421)
T PTZ00037         27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGDPEKFKEISRAYEVLSDPEKRKIYDEYGEEG   93 (421)
T ss_pred             chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHHhccHHHHHHHhhhcchh
Confidence            469999999999999999999     99999999988899999999999999999999999988653

>PRK14286 chaperone protein DnaJ; Provisional

Probab=99.68  E-value=9e-17  Score=132.09  Aligned_cols=62  Identities=37%  Similarity=0.538  Sum_probs=57.0

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.    .++|++|++||+||+||.+|+.||+++..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (372)
T PRK14286          3 ERSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGNKESEEKFKEATEAYEILRDPKKRQAYDQFGKAG   73 (372)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHHhCchh
Confidence            469999999999999999999     99999999873    479999999999999999999999988653

>PRK14279 chaperone protein DnaJ; Provisional

Probab=99.66  E-value=9.5e-17  Score=132.79  Aligned_cols=60  Identities=28%  Similarity=0.465  Sum_probs=56.0

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.    .++|++|++||+||+||++|+.||+++.
T Consensus         8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~   76 (392)
T PRK14279          8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGDPAAEERFKAVSEAHDVLSDPAKRKEYDETRR   76 (392)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhcchhhhhHHHHhhh
Confidence            469999999999999999999     99999999873    4799999999999999999999999874

>PRK14298 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=1.8e-16  Score=130.54  Aligned_cols=62  Identities=32%  Similarity=0.521  Sum_probs=57.0

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.   +++|++|++||+||+||.+|+.||+++..+
T Consensus         4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   73 (377)
T PRK14298          4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKEPDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAG   73 (377)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHHHhcchHhhhhhhhcCccc
Confidence            569999999999999999999     99999999863   469999999999999999999999988653

>PRK14282 chaperone protein DnaJ; Provisional

Probab=99.64  E-value=3.7e-16  Score=128.28  Aligned_cols=62  Identities=39%  Similarity=0.592  Sum_probs=56.9

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.     .++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~   74 (369)
T PRK14282          3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENRKEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVG   74 (369)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccchhHHHHHHHHHHHHHHHhcChhhHHHHhhcCccc
Confidence            469999999999999999999     99999999873     369999999999999999999999988654

>PRK14287 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=3.2e-16  Score=128.77  Aligned_cols=62  Identities=39%  Similarity=0.672  Sum_probs=56.8

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.   +++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~   72 (371)
T PRK14287          3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKAPDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTD   72 (371)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcc
Confidence            469999999999999999999     99999999863   469999999999999999999999988653

>PRK14276 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=3.2e-16  Score=129.10  Aligned_cols=62  Identities=35%  Similarity=0.616  Sum_probs=57.1

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||++++   +++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~   72 (380)
T PRK14276          3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEPGAEEKYKEVQEAYETLSDPQKRAAYDQYGAAG   72 (380)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcc
Confidence            469999999999999999999     99999999863   579999999999999999999999988653

>PRK14283 chaperone protein DnaJ; Provisional

Probab=99.63  E-value=3.8e-16  Score=128.52  Aligned_cols=62  Identities=37%  Similarity=0.555  Sum_probs=57.2

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCC---ChHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG---NGRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~---~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++   ++++|++|++||+||+||.+|+.||.++..+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g   73 (378)
T PRK14283          4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEEEGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAG   73 (378)
T ss_pred             cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhchhHHHHHHhhhcccc
Confidence            579999999999999999999     9999999986   4579999999999999999999999987653

>PRK14277 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=5.9e-16  Score=127.76  Aligned_cols=62  Identities=44%  Similarity=0.665  Sum_probs=56.8

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.    +++|++|++||+||+||.+|+.||.++..+
T Consensus         4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   74 (386)
T PRK14277          4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGDKEAEQKFKEINEAYEILSDPQKRAQYDQFGHAA   74 (386)
T ss_pred             CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccc
Confidence            469999999999999999999     99999999873    369999999999999999999999988653

>PRK14291 chaperone protein DnaJ; Provisional

Probab=99.62  E-value=6.5e-16  Score=127.39  Aligned_cols=62  Identities=39%  Similarity=0.652  Sum_probs=57.0

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.++||+     ++++|||++++   .++|++|++||+||+||.+|+.||.++..+
T Consensus         2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~   71 (382)
T PRK14291          2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKNPEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAA   71 (382)
T ss_pred             CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccc
Confidence            469999999999999999999     99999999863   579999999999999999999999988653

>PRK14285 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=5.5e-16  Score=127.20  Aligned_cols=60  Identities=35%  Similarity=0.495  Sum_probs=56.0

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      .|||+||||+++|+.+|||+     ++++|||+++.    .++|++|++||+||+||.+|..||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~   71 (365)
T PRK14285          3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGNKEAESIFKEATEAYEVLIDDNKRAQYDRFGHT   71 (365)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHcCcchhHHHHhcCcc
Confidence            69999999999999999999     99999999873    36999999999999999999999998765

>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []

Probab=99.61  E-value=5.6e-16  Score=97.15  Aligned_cols=54  Identities=41%  Similarity=0.730  Sum_probs=50.6

Q ss_pred             CcccccccCCCCCHHHHHH-----HHHhCCCCCCC-h----HHHHHHHHHHHHcCChhHHHHHH
Q 038518           39 SLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-G----RDFTEIHNTYETLLDPKAKAVYD   92 (131)
Q Consensus        39 ~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-~----~~f~~i~~Ay~vL~dp~~R~~YD   92 (131)
                      |||+||||+++++.++||+     ++++|||++.. .    +.|..|++||++|+||.+|+.||
T Consensus         1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~~~~~~~~~~i~~Ay~~L~~~~~R~~YD   64 (64)
T PF00226_consen    1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDEAEAEEKFARINEAYEILSDPERRRRYD   64 (64)
T ss_dssp             HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTHHHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred             ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhhhhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence            5899999999999999999     99999999664 3    59999999999999999999998

Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....

>PRK14280 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=7.1e-16  Score=126.92  Aligned_cols=62  Identities=39%  Similarity=0.585  Sum_probs=57.0

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCC---ChHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG---NGRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~---~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++   ++++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~   72 (376)
T PRK14280          3 KRDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEEGADEKFKEISEAYEVLSDDQKRAQYDQFGHAG   72 (376)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhccHhHHHHHHhcCccc
Confidence            369999999999999999999     9999999986   3579999999999999999999999988653

>PRK14299 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=7.6e-16  Score=122.89  Aligned_cols=61  Identities=34%  Similarity=0.609  Sum_probs=56.6

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCC---ChHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG---NGRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~---~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++   ++++|++|++||++|+||.+|+.||.++..
T Consensus         3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~   71 (291)
T PRK14299          3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKSPGAEEKFKEINEAYTVLSDPEKRRIYDTYGTT   71 (291)
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCc
Confidence            469999999999999999999     9999999986   347999999999999999999999998865

>PRK14284 chaperone protein DnaJ; Provisional

Probab=99.61  E-value=1.4e-15  Score=125.82  Aligned_cols=61  Identities=33%  Similarity=0.488  Sum_probs=56.2

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      .|||+||||+++|+.+|||+     ++++|||++++    +++|++|++||+||+||.+|+.||+++..+
T Consensus         1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g   70 (391)
T PRK14284          1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGDAEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDG   70 (391)
T ss_pred             CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHhcCHHHHHHHHhccccc
Confidence            38999999999999999999     99999999873    469999999999999999999999988653

>PRK14297 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=6.7e-16  Score=127.20  Aligned_cols=62  Identities=40%  Similarity=0.573  Sum_probs=56.8

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.    +++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~   73 (380)
T PRK14297          3 SKDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGNKEAEEKFKEINEAYQVLSDPQKKAQYDQFGTAD   73 (380)
T ss_pred             CCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcCHhhhCchhhcCccc
Confidence            369999999999999999999     99999999873    469999999999999999999999988653

>PRK14294 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1e-15  Score=125.57  Aligned_cols=62  Identities=37%  Similarity=0.544  Sum_probs=57.2

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.    +++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g   73 (366)
T PRK14294          3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGDKEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEG   73 (366)
T ss_pred             CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHhccHHHHHHHHhhcccc
Confidence            469999999999999999999     99999999873    469999999999999999999999988653

>PRK14278 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=9.6e-16  Score=126.26  Aligned_cols=60  Identities=33%  Similarity=0.532  Sum_probs=55.9

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      .|||+||||+++|+.+|||+     ++++|||++++   +++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~   70 (378)
T PRK14278          3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPDEEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP   70 (378)
T ss_pred             CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence            69999999999999999999     99999999874   36999999999999999999999998754

>PRK14295 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1.2e-15  Score=126.18  Aligned_cols=61  Identities=38%  Similarity=0.531  Sum_probs=55.7

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHh----hccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDM----SLVS   97 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~----~~~~   97 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.    +++|++|++||+||+||.+|+.||+    ++..
T Consensus         8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~   81 (389)
T PRK14295          8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGDAKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNG   81 (389)
T ss_pred             ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhccc
Confidence            469999999999999999999     99999999873    4799999999999999999999998    6643

>PRK14301 chaperone protein DnaJ; Provisional

Probab=99.60  E-value=1e-15  Score=125.90  Aligned_cols=62  Identities=37%  Similarity=0.508  Sum_probs=56.8

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.++||+     ++++|||+++.    +++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g   73 (373)
T PRK14301          3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDNPEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAG   73 (373)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCChHHHHHHHHHHHHHHHhcchhhhhhhhhccccc
Confidence            469999999999999999999     99999999873    369999999999999999999999988653

>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=1.4e-15  Score=121.41  Aligned_cols=61  Identities=41%  Similarity=0.677  Sum_probs=57.7

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      .|||+||||+++|+..|||+     ++++|||.+.+   +++|++|.+||+||+|+++|..||..+..+
T Consensus        43 ~d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~  111 (288)
T KOG0715|consen   43 EDYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDKEASKKFKEISEAYEILSDEEKRQEYDVYGLEQ  111 (288)
T ss_pred             cchhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCcchhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence            39999999999999999999     99999999884   469999999999999999999999999886

>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2e-15  Score=120.74  Aligned_cols=65  Identities=34%  Similarity=0.516  Sum_probs=60.3

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh----HHHHHHHHHHHHcCChhHHHHHHhhcccccCC
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG----RDFTEIHNTYETLLDPKAKAVYDMSLVSRRRT  101 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~----~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~~  101 (131)
                      ..|||+||||+.+++..+|++     ++++|||||+++    ++|+.|.+||+||+|+..|..||..+..+...
T Consensus         4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~dP~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~   77 (296)
T KOG0691|consen    4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGDPQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSA   77 (296)
T ss_pred             cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccc
Confidence            679999999999999999999     999999999954    69999999999999999999999999876544

>PRK14281 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=1.8e-15  Score=125.31  Aligned_cols=61  Identities=34%  Similarity=0.492  Sum_probs=56.4

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      .|||+||||+++|+.+|||+     ++++|||+++.    +++|++|++||+||+||.+|+.||.++..+
T Consensus         3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~   72 (397)
T PRK14281          3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDNKEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAG   72 (397)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCchHHHHHHHHHHHHHHHhhhhhhhhhhhhccchh
Confidence            69999999999999999999     99999999874    479999999999999999999999987653

>PRK10767 chaperone protein DnaJ; Provisional

Probab=99.58  E-value=2.4e-15  Score=123.48  Aligned_cols=62  Identities=40%  Similarity=0.600  Sum_probs=56.7

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.    .++|++|++||++|+||.+|+.||.++..+
T Consensus         3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~   73 (371)
T PRK10767          3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGDKEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAA   73 (371)
T ss_pred             CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcHHHHHHHHHHHHHHHHhcchhhhhHhhhccccc
Confidence            469999999999999999999     99999999873    369999999999999999999999987653

>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=2.3e-15  Score=118.26  Aligned_cols=63  Identities=41%  Similarity=0.585  Sum_probs=57.7

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh----HHHHHHHHHHHHcCChhHHHHHHhhccccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG----RDFTEIHNTYETLLDPKAKAVYDMSLVSRR   99 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~----~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~   99 (131)
                      ..|+|+||||+++++.++||+     ++++|||+++++    ++|++||+||+||+||.+|..||.+|..+.
T Consensus        30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l  101 (279)
T KOG0716|consen   30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDNPEATDKFKEINTAYAILSDPTKRNVYDEYGELGL  101 (279)
T ss_pred             hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCCchhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHH
Confidence            568999999999999999999     999999998863    699999999999999999999999977643

>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.56  E-value=3.3e-15  Score=124.37  Aligned_cols=63  Identities=40%  Similarity=0.546  Sum_probs=58.1

Q ss_pred             CCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-----hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           35 GTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-----GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ..++.||+||||.++++..+||+     |+++|||+++.     +++|+.|+.||+|||||..|+.||.+...
T Consensus         5 ~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~ieeat~~F~~i~aAYeVLSdp~eR~wyd~hreq   77 (508)
T KOG0717|consen    5 FKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDRIEEATQQFQLIQAAYEVLSDPQERAWYDSHREQ   77 (508)
T ss_pred             hhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCccHHHHHHHHHHHHHHHHHhcChHhhhhHHHHHHH
Confidence            45779999999999999999999     99999999884     47999999999999999999999988774

>TIGR02349 DnaJ_bact chaperone protein DnaJ

Probab=99.56  E-value=4.4e-15  Score=121.13  Aligned_cols=60  Identities=42%  Similarity=0.617  Sum_probs=55.6

Q ss_pred             CcccccccCCCCCHHHHHH-----HHHhCCCCCC---ChHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           39 SLYEVLRVEPKATISEIKT-----AKVYHPDLSG---NGRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        39 ~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~---~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      |||+||||+++|+.++||+     ++++|||+++   ++++|++|++||+||+|+.+|..||.++..+
T Consensus         1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~   68 (354)
T TIGR02349         1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKDKEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAG   68 (354)
T ss_pred             ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCccHHHHHHHHHHHHHHhhChHHHHhhhhccccc
Confidence            7999999999999999999     9999999986   3479999999999999999999999988664

This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.

>PRK14292 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=4.6e-15  Score=121.81  Aligned_cols=61  Identities=34%  Similarity=0.519  Sum_probs=56.3

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      .|||+||||+++|+.++||+     ++++|||++++   +++|++|++||+||+||.+|+.||.++..+
T Consensus         2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~   70 (371)
T PRK14292          2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKEKGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP   70 (371)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCChhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence            58999999999999999998     99999999973   479999999999999999999999988653

>PRK14290 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=5.3e-15  Score=121.31  Aligned_cols=60  Identities=37%  Similarity=0.626  Sum_probs=55.7

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-----hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-----GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      .|||+||||+++|+.+|||+     ++++|||+++.     .++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~   72 (365)
T PRK14290          3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGNKAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTV   72 (365)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHHHHHHHHHHHHHHHhcChhhhhhhcccCCc
Confidence            59999999999999999999     99999999863     36999999999999999999999998764

>PRK14300 chaperone protein DnaJ; Provisional

Probab=99.55  E-value=5.1e-15  Score=121.71  Aligned_cols=61  Identities=33%  Similarity=0.565  Sum_probs=56.1

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCC---ChHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSG---NGRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~---~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      .|||+||||+++|+.+|||+     ++++|||+++   ++++|++|++||++|+|+.+|..||.++..+
T Consensus         3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~   71 (372)
T PRK14300          3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAKDAEKKFKEINAAYDVLKDEQKRAAYDRFGHDA   71 (372)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcCHHHHHHHHHHHHHHhhhHhHhhHHHhccccc
Confidence            59999999999999999999     9999999986   3469999999999999999999999987653

>PRK14289 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=1.1e-14  Score=120.20  Aligned_cols=61  Identities=38%  Similarity=0.578  Sum_probs=56.4

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.    .++|++|++||++|+||.+|+.||.++..
T Consensus         4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~   73 (386)
T PRK14289          4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGDKEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHA   73 (386)
T ss_pred             cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCChHHHHHHHHHHHHHHHhcCHHHHHHHHHhccc
Confidence            469999999999999999999     99999999873    36999999999999999999999998764

>PRK14293 chaperone protein DnaJ; Provisional

Probab=99.54  E-value=8.5e-15  Score=120.44  Aligned_cols=60  Identities=38%  Similarity=0.623  Sum_probs=55.8

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCC---ChHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSG---NGRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~---~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      .|||+||||+++++.+|||+     ++++|||+++   ++++|++|++||+||+||.+|+.||.++..
T Consensus         3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~   70 (374)
T PRK14293          3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEPGAEDRFKEINRAYEVLSDPETRARYDQFGEA   70 (374)
T ss_pred             CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHHHHHHhchHHHHHHhhcccc
Confidence            59999999999999999999     9999999986   347999999999999999999999998764

>PRK10266 curved DNA-binding protein CbpA; Provisional

Probab=99.52  E-value=1.3e-14  Score=116.47  Aligned_cols=59  Identities=34%  Similarity=0.603  Sum_probs=55.1

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCC---ChHHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSG---NGRDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~---~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      .|||+||||+++++.+|||+     ++++|||+++   ++++|++|++||++|+||.+|+.||.++.
T Consensus         4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~   70 (306)
T PRK10266          4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEPDAEARFKEVAEAWEVLSDEQRRAEYDQLWQ   70 (306)
T ss_pred             CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence            69999999999999999999     9999999986   45799999999999999999999999764

>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.49  E-value=2.1e-14  Score=119.87  Aligned_cols=65  Identities=32%  Similarity=0.529  Sum_probs=59.1

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCC-------ChHHHHHHHHHHHHcCChhHHHHHHhhcccccC
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG-------NGRDFTEIHNTYETLLDPKAKAVYDMSLVSRRR  100 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~-------~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~  100 (131)
                      .+.+||.+|+|+++|+.+|||+     ++.+||||..       +++.|+.|++|||||+||.+|++||.+|..+-.
T Consensus         7 ~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~   83 (546)
T KOG0718|consen    7 DEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLK   83 (546)
T ss_pred             chhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhcccc
Confidence            3569999999999999999999     9999999976       346999999999999999999999999988664

>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional

Probab=99.48  E-value=4.2e-14  Score=126.33  Aligned_cols=64  Identities=25%  Similarity=0.341  Sum_probs=58.9

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhccccc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSRR   99 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~   99 (131)
                      ...+||+||||+++|+..+||+     |+++|||+++.   .++|+.|++||+||+||.+|+.||.+|..+.
T Consensus       571 ~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl  642 (1136)
T PTZ00341        571 PDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGNEGFHKFKKINEAYQILGDIDKKKMYNKFGYDGI  642 (1136)
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHhhcccccc
Confidence            4679999999999999999999     99999999873   4699999999999999999999999988754

>smart00271 DnaJ DnaJ molecular chaperone homology domain

Probab=99.47  E-value=6.6e-14  Score=86.34  Aligned_cols=49  Identities=43%  Similarity=0.704  Sum_probs=45.3

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCC-----ChHHHHHHHHHHHHcCChh
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSG-----NGRDFTEIHNTYETLLDPK   86 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~-----~~~~f~~i~~Ay~vL~dp~   86 (131)
                      .|||+||||+++++.++||+     ++++|||++.     +.+.|.+|++||++|+||.
T Consensus         1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~~~~~l~~Ay~~L~~~~   59 (60)
T smart00271        1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGDKEEAEEKFKEINEAYEVLSDPE   59 (60)
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchHHHHHHHHHHHHHHHHHcCCC
Confidence            48999999999999999999     9999999988     3479999999999999985

>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.45  E-value=7.4e-14  Score=108.04  Aligned_cols=64  Identities=36%  Similarity=0.489  Sum_probs=57.6

Q ss_pred             CCccCcccccccCCCCCHHHHHH-----HHHhCCCCCC------ChHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           35 GTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG------NGRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~------~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      +...|+|+||||.++|+..+|++     ++++|||+++      +.++|++|+.||.||+|.++|+.||..|.-.
T Consensus        11 f~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~id   85 (264)
T KOG0719|consen   11 FNKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSID   85 (264)
T ss_pred             ccccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCCC
Confidence            44569999999999999999999     9999999996      3469999999999999999999999987543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.45  E-value=1.1e-13  Score=113.14  Aligned_cols=64  Identities=27%  Similarity=0.443  Sum_probs=57.3

Q ss_pred             cccCCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh-------HHHHHHHHHHHHcCChhHHHHHHhhc
Q 038518           32 MALGTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG-------RDFTEIHNTYETLLDPKAKAVYDMSL   95 (131)
Q Consensus        32 ~~~~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~-------~~f~~i~~Ay~vL~dp~~R~~YD~~~   95 (131)
                      ...+..+|||+||||.++|+..||.+     +.++|||...++       .+|..|..|-+||+||++|+.||+..
T Consensus       388 kkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDnGe  463 (504)
T KOG0624|consen  388 KKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDNGE  463 (504)
T ss_pred             HHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccCCC
Confidence            34457899999999999999999988     999999998754       49999999999999999999999854

>PHA03102 Small T antigen; Reviewed

Probab=99.45  E-value=7.7e-14  Score=102.32  Aligned_cols=64  Identities=14%  Similarity=0.250  Sum_probs=58.9

Q ss_pred             cCcccccccCCCC--CHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCChhHHHHHHhhcccccCC
Q 038518           38 GSLYEVLRVEPKA--TISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLVSRRRT  101 (131)
Q Consensus        38 ~~~Y~iLgv~~~a--~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~~  101 (131)
                      ..+|+||||+++|  +.++||+     ++++|||+++++++|++|++||++|+|+.+|..||.++......
T Consensus         5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~~   75 (153)
T PHA03102          5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDEEKMKELNTLYKKFRESVKSLRDLDGEEDSSSE   75 (153)
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchhHHHHHHHHHHHHHhhHHHhccccccCCccccc
Confidence            3569999999999  9999999     99999999999999999999999999999999999998775543

>cd06257 DnaJ DnaJ domain or J-domain

Probab=99.41  E-value=3.4e-13  Score=81.68  Aligned_cols=46  Identities=43%  Similarity=0.717  Sum_probs=43.0

Q ss_pred             CcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCC
Q 038518           39 SLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLD   84 (131)
Q Consensus        39 ~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~d   84 (131)
                      |||+||||+++++.++||+     ++++|||++..    .+.|.+|++||++|+|
T Consensus         1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~~~~~~~~~~l~~Ay~~L~d   55 (55)
T cd06257           1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDDPEAEEKFKEINEAYEVLSD   55 (55)
T ss_pred             ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHhcC
Confidence            6899999999999999999     99999999884    5799999999999986

DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.

>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=6.7e-13  Score=98.06  Aligned_cols=60  Identities=42%  Similarity=0.633  Sum_probs=55.2

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-----hHHHHHHHHHHHHcCChhHHHHHHhhc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-----GRDFTEIHNTYETLLDPKAKAVYDMSL   95 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-----~~~f~~i~~Ay~vL~dp~~R~~YD~~~   95 (131)
                      ...+||+||||.++++..||++     ++++|||+++.     .+.|..|++||++|+|+.+|..||..+
T Consensus         4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~   73 (237)
T COG2214           4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPKVAEEKFKEINEAYEILSDPERRAEYDKIG   73 (237)
T ss_pred             hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence            3579999999999999999998     99999999883     379999999999999999999999863

>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1.7e-12  Score=99.42  Aligned_cols=64  Identities=28%  Similarity=0.432  Sum_probs=58.0

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCC----ChHHHHHHHHHHHHcCChhHHHHHHhhccccc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG----NGRDFTEIHNTYETLLDPKAKAVYDMSLVSRR   99 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~----~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~   99 (131)
                      ..-|+||||||+++++..|||+     ++++||||++    +++.|..|.+||+.|+|+..|..|..++..-.
T Consensus        97 ~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PDG  169 (230)
T KOG0721|consen   97 QKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPEEGDEEFFEAIAKAYQALTDKKSRENWEKYGNPDG  169 (230)
T ss_pred             hcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCcchhHHHHHHHHHHHHHhcchhhHHHHHHhCCCCC
Confidence            3569999999999999999999     9999999975    45699999999999999999999999987644

>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ

Probab=99.34  E-value=1.6e-12  Score=114.20  Aligned_cols=62  Identities=37%  Similarity=0.507  Sum_probs=56.3

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhccccc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSRR   99 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~   99 (131)
                      .|||+||||+++|+.++||+     ++++|||++++   .++|++|++||++|+||.+|..||.++..+.
T Consensus         2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~   71 (871)
T TIGR03835         2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKAPDAASIFAEINEANDVLSNPKKRANYDKYGHDGV   71 (871)
T ss_pred             CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHhCCHHHHHHHhhhccccc
Confidence            59999999999999999999     99999999874   3589999999999999999999999876543

This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.

>PRK01356 hscB co-chaperone HscB; Provisional

Probab=99.33  E-value=3.4e-12  Score=94.75  Aligned_cols=60  Identities=23%  Similarity=0.367  Sum_probs=52.6

Q ss_pred             cCcccccccCCC--CCHHHHHH-----HHHhCCCCCCCh-------HHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           38 GSLYEVLRVEPK--ATISEIKT-----AKVYHPDLSGNG-------RDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        38 ~~~Y~iLgv~~~--a~~~eIk~-----a~~~HPDk~~~~-------~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      .|||+||||++.  ++..+|++     ++++|||+..+.       +.+..|++||+||+||.+|+.|+..+.+
T Consensus         2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~g   75 (166)
T PRK01356          2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQN   75 (166)
T ss_pred             CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHccC
Confidence            589999999997  68899999     999999998642       2578999999999999999999988753

>PRK05014 hscB co-chaperone HscB; Provisional

Probab=99.29  E-value=4.8e-12  Score=94.33  Aligned_cols=60  Identities=22%  Similarity=0.401  Sum_probs=52.0

Q ss_pred             cCcccccccCCC--CCHHHHHH-----HHHhCCCCCCC---------hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           38 GSLYEVLRVEPK--ATISEIKT-----AKVYHPDLSGN---------GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        38 ~~~Y~iLgv~~~--a~~~eIk~-----a~~~HPDk~~~---------~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      .|||+||||++.  ++..+|++     ++++|||+..+         .+.|..||+||++|+||.+|..|+..+.+
T Consensus         1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~g   76 (171)
T PRK05014          1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLHG   76 (171)
T ss_pred             CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhcC
Confidence            389999999996  67889988     99999999653         24789999999999999999999976653

>PRK00294 hscB co-chaperone HscB; Provisional

Probab=99.23  E-value=2.1e-11  Score=91.14  Aligned_cols=62  Identities=21%  Similarity=0.410  Sum_probs=54.1

Q ss_pred             CccCcccccccCCC--CCHHHHHH-----HHHhCCCCCCC---------hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           36 TRGSLYEVLRVEPK--ATISEIKT-----AKVYHPDLSGN---------GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~--a~~~eIk~-----a~~~HPDk~~~---------~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      +..|||++|||++.  .+..+|++     ++++|||+...         .+.+..||+||+||+||.+|+.|+..+.+
T Consensus         2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~g   79 (173)
T PRK00294          2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALSG   79 (173)
T ss_pred             CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            46799999999998  56799999     99999999763         24799999999999999999999987764

>PRK03578 hscB co-chaperone HscB; Provisional

Probab=99.23  E-value=2.3e-11  Score=91.15  Aligned_cols=61  Identities=20%  Similarity=0.329  Sum_probs=52.4

Q ss_pred             ccCcccccccCCC--CCHHHHHH-----HHHhCCCCCCCh---------HHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           37 RGSLYEVLRVEPK--ATISEIKT-----AKVYHPDLSGNG---------RDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        37 ~~~~Y~iLgv~~~--a~~~eIk~-----a~~~HPDk~~~~---------~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ..|||+||||++.  ++..+|++     ++++|||+....         +.+..||+||++|+||.+|..|+..+.+
T Consensus         5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~G   81 (176)
T PRK03578          5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLRG   81 (176)
T ss_pred             CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhcC
Confidence            4799999999986  67889988     999999997631         3568999999999999999999976653

>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.13  E-value=4.4e-11  Score=99.89  Aligned_cols=61  Identities=21%  Similarity=0.369  Sum_probs=56.8

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCC---ChHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG---NGRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~---~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ..|+|.+|||+.+++.++||+     |...|||||.   ++|.|+.|..||++|+|+++|..||..+..
T Consensus       234 ~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~k  302 (490)
T KOG0720|consen  234 ILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMIPRAEEAFKKLQVAFEVIGDSVKRKEYDLELKK  302 (490)
T ss_pred             CCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCChhHHHHHHHHHHHHHHhcchhhhhHHHHHHHH
Confidence            779999999999999999999     9999999988   468999999999999999999999987654

>PTZ00100 DnaJ chaperone protein; Provisional

Probab=99.07  E-value=1.5e-10  Score=81.41  Aligned_cols=47  Identities=23%  Similarity=0.443  Sum_probs=44.0

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcC
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLL   83 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~   83 (131)
                      ..++|+||||+++++.+||++     ++++|||++++.+.|.+|++||++|.
T Consensus        64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs~~~~~kIneAyevL~  115 (116)
T PTZ00100         64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGSTYIASKVNEAKDLLL  115 (116)
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHh
Confidence            468999999999999999998     99999999888899999999999985

>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=4.2e-11  Score=94.14  Aligned_cols=68  Identities=31%  Similarity=0.433  Sum_probs=60.7

Q ss_pred             cCCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh---HHHHHHHHHHHHcCChhHHHHHHhhcccccCC
Q 038518           34 LGTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG---RDFTEIHNTYETLLDPKAKAVYDMSLVSRRRT  101 (131)
Q Consensus        34 ~~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~---~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~~  101 (131)
                      -++..|+|+||||.++++..||.+     ++++|||++.+.   +.|+.|.+||++|.|.+.|..||-.+......
T Consensus        29 YCG~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~e~k~~F~~iAtayeilkd~e~rt~ydyaldhpd~~  104 (329)
T KOG0722|consen   29 YCGAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDPESKKLFVKIATAYEILKDNETRTQYDYALDHPDEV  104 (329)
T ss_pred             cccchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCchhhhhhhhhhcccccccchhhHHhHHHHhcCchHH
Confidence            356789999999999999999999     999999998854   58999999999999999999999988775543

>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.99  E-value=4.5e-10  Score=86.69  Aligned_cols=64  Identities=33%  Similarity=0.524  Sum_probs=57.1

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh-----HHHHHHHHHHHHcCChhHHHHHHhhcccccC
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG-----RDFTEIHNTYETLLDPKAKAVYDMSLVSRRR  100 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~-----~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~  100 (131)
                      +.|+|+||+|.++++..+|++     ++++|||+++..     .+|.+|.+||++|+|+.+|..||.++.+...
T Consensus         2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~   75 (306)
T KOG0714|consen    2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSPKEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK   75 (306)
T ss_pred             cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCchhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence            468999999999999999999     999999997754     3799999999999999999999999985443

>PHA02624 large T antigen; Provisional

Probab=98.95  E-value=4.8e-10  Score=97.21  Aligned_cols=55  Identities=22%  Similarity=0.410  Sum_probs=52.5

Q ss_pred             ccCcccccccCCCC--CHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCChhHHHHH
Q 038518           37 RGSLYEVLRVEPKA--TISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVY   91 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a--~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~dp~~R~~Y   91 (131)
                      ..++|+||||++++  +.++||+     ++++|||++++.++|++|++||++|+|+.++..|
T Consensus        10 ~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGdeekfk~Ln~AYevL~d~~k~~r~   71 (647)
T PHA02624         10 SKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGDEEKMKRLNSLYKKLQEGVKSARQ   71 (647)
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCcHHHHHHHHHHHHHHhcHHHhhhc
Confidence            45889999999999  9999999     9999999999999999999999999999999998

>PRK01773 hscB co-chaperone HscB; Provisional

Probab=98.94  E-value=1.7e-09  Score=80.92  Aligned_cols=60  Identities=18%  Similarity=0.264  Sum_probs=52.3

Q ss_pred             ccCcccccccCCC--CCHHHHHH-----HHHhCCCCCCCh---------HHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           37 RGSLYEVLRVEPK--ATISEIKT-----AKVYHPDLSGNG---------RDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        37 ~~~~Y~iLgv~~~--a~~~eIk~-----a~~~HPDk~~~~---------~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      +.|||++|||++.  .+..++++     .+++|||+....         +....||+||.+|+||.+|+.|-..+.
T Consensus         1 ~~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~   76 (173)
T PRK01773          1 MNNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALN   76 (173)
T ss_pred             CCChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhc
Confidence            3599999999987  78888887     999999997532         378999999999999999999998776

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=9.8e-10  Score=91.36  Aligned_cols=65  Identities=29%  Similarity=0.474  Sum_probs=57.5

Q ss_pred             cccCCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh-----HHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           32 MALGTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG-----RDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        32 ~~~~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~-----~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      ...+.-+|||.||||.++++..|||+     ++.+|||++..+     .+|+++.+||.+|+||.+|..||..-.
T Consensus       367 LkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevgeAy~il~d~~kr~r~dsg~d  441 (486)
T KOG0550|consen  367 LKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVGEAYTILSDPMKRVRFDSGQD  441 (486)
T ss_pred             HHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHHHHHHHhcCHHHHhhcccccc
Confidence            34456789999999999999999999     999999998854     499999999999999999999997543

>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]

Probab=98.75  E-value=7.2e-09  Score=87.05  Aligned_cols=61  Identities=23%  Similarity=0.353  Sum_probs=55.7

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---------hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---------GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---------~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      .-|+||||||+.+++..+||+     +.++||||.+.         ++.+++|++||+.|+|...|+.|-.+|.-
T Consensus        97 ~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP  171 (610)
T COG5407          97 GFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP  171 (610)
T ss_pred             CCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence            459999999999999999999     89999999874         36999999999999999999999998764

>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional

Probab=98.74  E-value=4.7e-09  Score=83.16  Aligned_cols=48  Identities=29%  Similarity=0.316  Sum_probs=43.0

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCC-----------ChHHHHHHHHHHHHcCC
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG-----------NGRDFTEIHNTYETLLD   84 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~-----------~~~~f~~i~~Ay~vL~d   84 (131)
                      ..++|+||||+++++.++||+     ++++|||+..           ++++|++|++||++|+.
T Consensus       199 ~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~  262 (267)
T PRK09430        199 LEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK  262 (267)
T ss_pred             HHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence            469999999999999999999     9999999953           23699999999999985

>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=2.6e-08  Score=79.27  Aligned_cols=66  Identities=27%  Similarity=0.329  Sum_probs=54.8

Q ss_pred             CccCcccccccCC---CCCHHHHHH-----HHHhCCCCCC------ChHHHHHHHHHHHHcCChhHHHHHHhhcccccCC
Q 038518           36 TRGSLYEVLRVEP---KATISEIKT-----AKVYHPDLSG------NGRDFTEIHNTYETLLDPKAKAVYDMSLVSRRRT  101 (131)
Q Consensus        36 ~~~~~Y~iLgv~~---~a~~~eIk~-----a~~~HPDk~~------~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~~  101 (131)
                      +..|+|.+|||+.   .++..+|.+     +.++|||+..      .++.|..|+.||+||+|+.+|..||........+
T Consensus        41 k~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~df~advp  120 (379)
T COG5269          41 KKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSNDFDADVP  120 (379)
T ss_pred             hhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccccccCCC
Confidence            3579999999985   467777777     8999999974      3579999999999999999999999877665433

>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB

Probab=98.50  E-value=2.7e-07  Score=67.90  Aligned_cols=48  Identities=29%  Similarity=0.462  Sum_probs=40.5

Q ss_pred             CCHHHHHH-----HHHhCCCCCCC---------hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           50 ATISEIKT-----AKVYHPDLSGN---------GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        50 a~~~eIk~-----a~~~HPDk~~~---------~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      .+..+|++     ++++|||+..+         .+.+..||+||++|+||.+|+.|+..+.+
T Consensus         3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~g   64 (157)
T TIGR00714         3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLHG   64 (157)
T ss_pred             CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhcC
Confidence            45677877     99999998542         25899999999999999999999988864

This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.

>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=2.9e-07  Score=70.44  Aligned_cols=60  Identities=23%  Similarity=0.352  Sum_probs=52.6

Q ss_pred             cCCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh-----HHHHHHHHHHHHcCChhHHHHHHh
Q 038518           34 LGTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG-----RDFTEIHNTYETLLDPKAKAVYDM   93 (131)
Q Consensus        34 ~~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~-----~~f~~i~~Ay~vL~dp~~R~~YD~   93 (131)
                      .+-+.|+|+||.|.|..+.++||+     ++..|||+|+++     ..|.-|.+||.+|-|+..|...+.
T Consensus        49 tyfnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~~rAqkAFdivkKA~k~l~n~~~rkr~~~  118 (250)
T KOG1150|consen   49 TYFNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDAERAQKAFDIVKKAYKLLENDKIRKRCLD  118 (250)
T ss_pred             cccccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccHHHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence            445789999999999999999999     889999999965     489999999999999987766543

>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.89  E-value=1.7e-05  Score=62.25  Aligned_cols=80  Identities=23%  Similarity=0.363  Sum_probs=60.8

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHH-HcCC--------------hhHHHHHHh
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYE-TLLD--------------PKAKAVYDM   93 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~-vL~d--------------p~~R~~YD~   93 (131)
                      -..||.||||..+|+..+++.     ++++|||.+..   .+.|.+|.+||. ||+.              ++--..||-
T Consensus        46 ~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~adaa~f~qideafrkvlq~~~~ktn~~qn~~edee~~~efdi  125 (342)
T KOG0568|consen   46 IMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEEADAARFIQIDEAFRKVLQEKFAKTNARQNIGEDEEDAEEFDI  125 (342)
T ss_pred             HHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCccccHHHHHHHHHHHHHHHHHHHHHhhhccccccchhhHHHhhh
Confidence            457899999999999999999     99999999773   469999999998 7754              223344665


Q ss_pred             hcccccCCCccCCCCCCCC-CCCC
Q 038518           94 SLVSRRRTRTTSFGCSGRS-GFHP  116 (131)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~-~~~~  116 (131)
                      .....+.+.+-++.+-|+| .++.
T Consensus       126 k~kapqhrhyls~egig~gtp~qr  149 (342)
T KOG0568|consen  126 KHKAPQHRHYLSFEGIGFGTPFQR  149 (342)
T ss_pred             ccCCchhhhhhcccCcccCCchHH
Confidence            5556667777777776665 4444

>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=7.2e-05  Score=51.83  Aligned_cols=44  Identities=25%  Similarity=0.288  Sum_probs=40.8

Q ss_pred             ccccccCCCCCHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCC
Q 038518           41 YEVLRVEPKATISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLD   84 (131)
Q Consensus        41 Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~d   84 (131)
                      -.||||+++++.+.||+     ....|||+..+.-.-.+||||+++|..
T Consensus        59 ~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYlAsKINEAKdlLe~  107 (112)
T KOG0723|consen   59 ALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYLASKINEAKDLLEG  107 (112)
T ss_pred             HHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHHHHHHHHHHHHHhc
Confidence            47999999999999999     889999999999999999999999875

>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=97.61  E-value=4.8e-05  Score=56.02  Aligned_cols=63  Identities=29%  Similarity=0.544  Sum_probs=48.2

Q ss_pred             CCccCcccccccCCC--CCHHHHH-H----HHHhCCCCCC---------ChHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           35 GTRGSLYEVLRVEPK--ATISEIK-T----AKVYHPDLSG---------NGRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~--a~~~eIk-~----a~~~HPDk~~---------~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ....+||.++|....  ..+..++ .    .+++|||+..         +.+...+|++||.+|+||-.|+.|=..+..
T Consensus         5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~g   83 (168)
T KOG3192|consen    5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLKG   83 (168)
T ss_pred             chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHhC
Confidence            346789999986543  3444444 2    9999999954         346899999999999999999999866544

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.46  E-value=0.00013  Score=67.37  Aligned_cols=47  Identities=28%  Similarity=0.418  Sum_probs=39.6

Q ss_pred             ccCcccccccCCC----CCHHHHHH-----HHHhCCCCCC-ChHHHHHHHHHHHHcC
Q 038518           37 RGSLYEVLRVEPK----ATISEIKT-----AKVYHPDLSG-NGRDFTEIHNTYETLL   83 (131)
Q Consensus        37 ~~~~Y~iLgv~~~----a~~~eIk~-----a~~~HPDk~~-~~~~f~~i~~Ay~vL~   83 (131)
                      ..+-|+||.|+-+    -..++||+     +.+||||||+ ..++|..+++||+.|+
T Consensus      1280 ~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPEGRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1280 VDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPEGREMFERVNKAYELLS 1336 (2235)
T ss_pred             hHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHH
Confidence            3467999999843    34477888     9999999999 5689999999999998

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.69  E-value=0.042  Score=40.82  Aligned_cols=39  Identities=36%  Similarity=0.661  Sum_probs=33.8

Q ss_pred             HHHhCCCCCCCh---------HHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           58 AKVYHPDLSGNG---------RDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        58 a~~~HPDk~~~~---------~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      .+.+|||+....         +.+..++.||.+|.||..|..|=....
T Consensus        28 ~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~   75 (174)
T COG1076          28 QRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALA   75 (174)
T ss_pred             HHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhc
Confidence            999999997732         488999999999999999999976665

>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []

Probab=90.73  E-value=0.42  Score=34.11  Aligned_cols=47  Identities=19%  Similarity=0.189  Sum_probs=34.8

Q ss_pred             cccccccCCCCCHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCChh
Q 038518           40 LYEVLRVEPKATISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLDPK   86 (131)
Q Consensus        40 ~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~dp~   86 (131)
                      -.+||||++..+.++|.+     -...+|+++++.-.-.+|..|.+.|....
T Consensus        60 A~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfYLQSKV~rAKErl~~El  111 (127)
T PF03656_consen   60 ARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFYLQSKVFRAKERLEQEL  111 (127)
T ss_dssp             HHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHHHHHHHHHHHHHHHHHH
Confidence            369999999999999999     77888999988888888999999887544

In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.

>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]

Probab=89.75  E-value=0.15  Score=37.88  Aligned_cols=45  Identities=33%  Similarity=0.454  Sum_probs=37.7

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-----------hHHHHHHHHHHHHc
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-----------GRDFTEIHNTYETL   82 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-----------~~~f~~i~~Ay~vL   82 (131)
                      .+.|.+||+.......+|++     ....|||+..+           .+++++|++||+.+
T Consensus       113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~  173 (174)
T COG1076         113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI  173 (174)
T ss_pred             hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence            68899999999999999999     78889998542           35888899998753

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	131
2lo1_A	71	Nmr Structure Of The Protein Bc008182, A Dnaj-Like		6e-05
2o37_A	92	J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From S		2e-04
2och_A	73	J-domain Of Dnj-12 From Caenorhabditis Elegans Leng		5e-04

>pdb|2LO1|A Chain A, Nmr Structure Of The Protein Bc008182, A Dnaj-Like Domain From Homo Sapiens Length = 71

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 25/60 (41%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 39 SLYEVLRVEPKATISEIKTAK-----VYHPDLSGN-GRDFTEIHNTYETLLDPKAKAVYD 92
          + Y+VL V+P AT  E+K A       YHPD + N G  F +I   YE L D K + +YD
Sbjct: 7  TYYDVLGVKPNATQEELKKAYRKLALKYHPDKNPNEGEKFKQISQAYEVLSDAKKRELYD 66

>pdb|2O37|A Chain A, J-Domain Of Sis1 Protein, Hsp40 Co-Chaperone From Saccharomyces Cerevisiae Length = 92

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 40 LYEVLRVEPKATISEIK-----TAKVYHPDL-SGNGRDFTEIHNTYETLLDPKAKAVYDM 93
          LY++L V P A   E+K      A  YHPD  +G+   F EI   +E L DP+ + +YD 
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQ 69

>pdb|2OCH|A Chain A, J-domain Of Dnj-12 From Caenorhabditis Elegans Length = 73

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 41 YEVLRVEPKATISEIKTAK-----VYHPDLSGNG-RDFTEIHNTYETLLDPKAKAVYDMS 94
          Y+VL V+P A+ +E+K A       +HPD + +G   F +I   YE L D K + +YD  
Sbjct: 11 YDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQG 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	131
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	9e-12
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	3e-11
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	3e-11
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	5e-11
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	8e-11
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	8e-10
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	1e-09
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	1e-09
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	2e-09
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	2e-09
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	2e-09
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	2e-09
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	3e-09
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	5e-09
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	8e-09
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	9e-09
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	1e-08
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	2e-08
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	2e-08
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	2e-08
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	2e-08
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	3e-08
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	1e-07
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	4e-07
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	9e-07
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	2e-06
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	5e-06
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	2e-05
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	3e-05
2guz_A	71	Mitochondrial import inner membrane translocase su	1e-04

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae} Length = 92

 Score = 56.2 bits (136), Expect = 9e-12
 Identities = 23/59 (38%), Positives = 31/59 (52%), Gaps = 6/59 (10%)

Query: 40 LYEVLRVEPKATISEIKT-----AKVYHPDLS-GNGRDFTEIHNTYETLLDPKAKAVYD 92
          LY++L V P A   E+K      A  YHPD   G+   F EI   +E L DP+ + +YD
Sbjct: 10 LYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYD 68

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1 Length = 114

 Score = 55.6 bits (134), Expect = 3e-11
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 40 LYEVLRVEPKATIS--EIKTA-----KVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYD 92
          L ++L +E  A  +   ++ A     K +HPD  G+     +++  Y+ + D    A   
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A Length = 73

 Score = 54.2 bits (131), Expect = 3e-11
 Identities = 22/59 (37%), Positives = 34/59 (57%), Gaps = 6/59 (10%)

Query: 40 LYEVLRVEPKATISEIK-----TAKVYHPDLSGNGRD-FTEIHNTYETLLDPKAKAVYD 92
           Y+VL V+P A+ +E+K      A  +HPD + +G + F +I   YE L D K + +YD
Sbjct: 10 YYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYD 68

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C Length = 174

 Score = 56.1 bits (135), Expect = 5e-11
 Identities = 18/93 (19%), Positives = 33/93 (35%), Gaps = 9/93 (9%)

Query: 40  LYEVLRVEPKATIS--EIKTA-----KVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYD 92
           L ++L +E  A  +   ++ A     K +HPD  G+     +++  Y+ + D    A   
Sbjct: 13  LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 72

Query: 93  MSLVSRRRTRTTSFGCSGRSGFHPTRRWETDQC 125
                     T  F  S   G       +  +C
Sbjct: 73  D--FGGFWDATEVFASSLNPGVDAIYCKQWPEC 103

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens} Length = 155

 Score = 55.2 bits (133), Expect = 8e-11
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 15/68 (22%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPD-LSGNGRD---------FTEIHNTYETLLDP 85
          Y +L  +P A IS++K        +YHPD  S +            F EI   ++ L + 
Sbjct: 13 YSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNE 72

Query: 86 KAKAVYDM 93
          + K  YD+
Sbjct: 73 ETKREYDL 80

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus} Length = 109

 Score = 51.6 bits (124), Expect = 8e-10
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 9/63 (14%)

Query: 39 SLYEVLRVEPKATISEIK-----TAKVYHPDLSGNGRD----FTEIHNTYETLLDPKAKA 89
          SLY VL ++  AT  +IK      A  YHPD + +  +    F EI+N +  L D   + 
Sbjct: 18 SLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRN 77

Query: 90 VYD 92
          +YD
Sbjct: 78 IYD 80

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1 Length = 94

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 15/68 (22%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDL-SGNGRD---------FTEIHNTYETLLDP 85
          Y +L  +P A +S++K        +YHPD  S +            F EI   ++ L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 86 KAKAVYDM 93
          + K  YD+
Sbjct: 79 ETKKKYDL 86

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 50.9 bits (122), Expect = 1e-09
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 9/62 (14%)

Query: 40 LYEVLRVEPKATISEIKT-----AKVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAV 90
          LY++L V   AT ++IK        +YHPD +    +    FT I   Y  L     +  
Sbjct: 19 LYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRK 78

Query: 91 YD 92
          YD
Sbjct: 79 YD 80

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 77

 Score = 49.9 bits (120), Expect = 2e-09
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDL---SGNGRDFTEIHNTYETLLDPKAKAVYD 92
          Y+ L +   A+  EIK      A  YHPD     G    F EI   Y+ L DP+ + ++D
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 49.9 bits (120), Expect = 2e-09
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          YE+L V   A+  ++K A       +HPD +   G    F  I   Y  L +P+ +  YD
Sbjct: 10 YEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYD 69

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 49.9 bits (120), Expect = 2e-09
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
          Y++L V   A+  EIK      AK YHPD + +       F+++   YE L D   +  Y
Sbjct: 10 YQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQY 69

Query: 92 D 92
          D
Sbjct: 70 D 70

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus} Length = 88

 Score = 50.1 bits (120), Expect = 2e-09
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLS---GNGRDFTEIHNTYETLLDPKAKAVYD 92
          Y VL V   A+ ++IK A     + +HPD +   G    F +I   YE L + + +  YD
Sbjct: 20 YRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYD 79

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus} Length = 210

 Score = 51.8 bits (124), Expect = 3e-09
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
          Y +L V   A+  EI+ A        HPD + N  +    F +I+  YE L D   +  Y
Sbjct: 5  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 64

Query: 92 D 92
          D
Sbjct: 65 D 65

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 112

 Score = 49.8 bits (119), Expect = 5e-09
 Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
          Y +L  +  +++ +I       A   HPD           F ++    E L + +++A Y
Sbjct: 23 YTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARY 82

Query: 92 D 92
          D
Sbjct: 83 D 83

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 48.5 bits (116), Expect = 8e-09
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDLSGNG---RDFTEIHNTYETLLDPKAKAVYD 92
          Y++L V   A+  +IK      A  YHPD + +      F EI   YETL D   +  YD
Sbjct: 10 YDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYD 69

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92

 Score = 48.5 bits (116), Expect = 9e-09
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 10/62 (16%)

Query: 41 YEVLRVEPKATISEIKTA--KV---YHPDLS-GNGRD----FTEIHNTYETLLDPKAKAV 90
          YEVL V+  A+  +IK A  K+   +HPD +  N  +    F  +   YE L D K +++
Sbjct: 12 YEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSL 71

Query: 91 YD 92
          YD
Sbjct: 72 YD 73

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 82

 Score = 48.0 bits (115), Expect = 1e-08
 Identities = 22/62 (35%), Positives = 32/62 (51%), Gaps = 10/62 (16%)

Query: 41 YEVLRVEPKATISEIKTA--KV---YHPDLS-GNGRD----FTEIHNTYETLLDPKAKAV 90
          YEVL V  +A+   IK A  K+   +HPD +  N  +    F ++   YE L D K + +
Sbjct: 12 YEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDI 71

Query: 91 YD 92
          YD
Sbjct: 72 YD 73

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A Length = 103

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 22/61 (36%), Positives = 29/61 (47%), Gaps = 9/61 (14%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
          YE+L V   A   EI+      A  YHPD +   ++    F EI   YE L D + +A Y
Sbjct: 6  YEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAY 65

Query: 92 D 92
          D
Sbjct: 66 D 66

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens} Length = 99

 Score = 47.7 bits (114), Expect = 2e-08
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 10/62 (16%)

Query: 41 YEVLRVEPKATISEIKTA--KV---YHPDLSGNGRD-----FTEIHNTYETLLDPKAKAV 90
          YE+L V   A+  +IK A  +    +HPD + + ++     F E+   YE L D   + +
Sbjct: 5  YEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREI 64

Query: 91 YD 92
          YD
Sbjct: 65 YD 66

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus} Length = 780

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 41  YEVLRVEPKATISEI-----KTAKVYHPDLSGNGRD----FTEIHNTYETLLDPKAKAVY 91
           Y +L V   A+  EI     K A   HPD + N  +    F +I+  YE L D   +  Y
Sbjct: 24  YSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKY 83

Query: 92  DMSLVSRRRTRTTSFGCSGRSGFHPTRRWETDQ 124
           D                S     +    ++ D 
Sbjct: 84  DKYGEKGLEDNQGGQYESWSYYRYDFGIYDDDP 116

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A Length = 329

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDLS-GNGRD--FTEIHNTYETLLDPKAKAVYD 92
          Y +L V+P   +  IKT     A+ YHPD+S  N  +  F ++   +E L D + +A YD
Sbjct: 31 YAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYD 90

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans} Length = 109

 Score = 47.4 bits (113), Expect = 3e-08
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 13/65 (20%)

Query: 41 YEVLRVEPKA-TISEIKT-----AKVYHPDLSGNGRD-------FTEIHNTYETLLDPKA 87
          Y+VL V  +     ++       A+ +HPD   N  +       F  I   YETL D +A
Sbjct: 18 YDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEA 77

Query: 88 KAVYD 92
          K  YD
Sbjct: 78 KTNYD 82

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 45.1 bits (107), Expect = 1e-07
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 8/60 (13%)

Query: 41 YEVLRVEPKATISEIKT-----AKVYHPDLSGN-GRD--FTEIHNTYETLLDPKAKAVYD 92
          +++L V+P A+  E+       A + HPD     G +  F  + N    LL         
Sbjct: 30 WDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSGPSS 89

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1 Length = 171

 Score = 45.3 bits (107), Expect = 4e-07
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 41 YEVLRVEPKATI--SEIKTA-----KVYHPDLSGNGRD---------FTEIHNTYETLLD 84
          + +  +  +  +    +        + YHPD   +G              I+  ++TL  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 85 PKAKAVYDMSL 95
          P  +A Y +SL
Sbjct: 64 PLMRAEYLLSL 74

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1 Length = 79

 Score = 42.2 bits (99), Expect = 2e-06
 Identities = 11/71 (15%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 31 VMALGTRGSLYEVLRVEPKA--TISEIKTA-----KVYHPDLSGNGRDFTEIHNTYETLL 83
          V++   +  L E+L++  +       ++ A      + HPD  G+     E+++ + T  
Sbjct: 4  VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFK 63

Query: 84 DPKAKAVYDMS 94
                  ++ 
Sbjct: 64 TEVYNLRMNLG 74

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 43.1 bits (102), Expect = 5e-06
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 12/65 (18%)

Query: 41  YEVLRVEPKATISEI-----KTAKVYHPDLSGNG-------RDFTEIHNTYETLLDPKAK 88
           Y++L V+  A   EI     K A  +HPD   N        + F +I    E L DP+ +
Sbjct: 385 YKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR 444

Query: 89  AVYDM 93
             +D 
Sbjct: 445 KKFDD 449

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Length = 181

 Score = 41.1 bits (96), Expect = 2e-05
 Identities = 11/39 (28%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 58 AKVYHPDLSGNGRD-FTEIHNTYETLLDPKAKAVYDMSL 95
             +HPD++  G +  + ++  Y TL DP  ++ Y + L
Sbjct: 43 QAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL 81

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1 Length = 88

 Score = 39.3 bits (92), Expect = 3e-05
 Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 13/62 (20%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGNGRD-----FTEIHNTYETLLDPKAKAV 90
            V+    K   SE K         +HPD +    D     F  + N    L   + +A 
Sbjct: 19 TSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRL---EKQAF 75

Query: 91 YD 92
           D
Sbjct: 76 LD 77

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae} Length = 71

 Score = 36.9 bits (86), Expect = 1e-04
 Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 6/54 (11%)

Query: 41 YEVLRVEPKA-TISEIKTA-----KVYHPDLSGNGRDFTEIHNTYETLLDPKAK 88
           ++L +     T  ++K          HPD  G+    T+I+   + L      
Sbjct: 17 LQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS 70

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	131
2o37_A	92	Protein SIS1; HSP40, J-domain, cochaperone, APC900	99.78
2och_A	73	Hypothetical protein DNJ-12; HSP40, J-domain, chap	99.76
2dn9_A	79	DNAJ homolog subfamily A member 3; J-domain, TID1,	99.75
2ctr_A	88	DNAJ homolog subfamily B member 9; J-domain, chape	99.74
1hdj_A	77	Human HSP40, HDJ-1; molecular chaperone; NMR {Homo	99.74
2ej7_A	82	HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, nati	99.74
2dmx_A	92	DNAJ homolog subfamily B member 8; DNAJ J domain,	99.73
2ctp_A	78	DNAJ homolog subfamily B member 12; J-domain, chap	99.73
2lgw_A	99	DNAJ homolog subfamily B member 2; J domain, HSJ1A	99.72
2yua_A	99	Williams-beuren syndrome chromosome region 18 prot	99.72
2cug_A	88	Mkiaa0962 protein; DNAJ-like domain, structural ge	99.71
2ctq_A	112	DNAJ homolog subfamily C member 12; J-domain, chap	99.71
1wjz_A	94	1700030A21RIK protein; J-domain, DNAJ like protein	99.71
2ctw_A	109	DNAJ homolog subfamily C member 5; J-domain, chape	99.71
1bq0_A	103	DNAJ, HSP40; chaperone, heat shock, protein foldin	99.68
2qsa_A	109	DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, s	99.67
2l6l_A	155	DNAJ homolog subfamily C member 24; DPH4, Zn-CSL,	99.65
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	99.61
1gh6_A	114	Large T antigen; tumor suppressor, oncoprotein, an	99.6
3hho_A	174	CO-chaperone protein HSCB homolog; structural geno	99.56
2pf4_E	174	Small T antigen; PP2A, SV40, DNAJ, aalpha subunit,	99.56
2ys8_A	90	RAB-related GTP-binding protein RABJ; DNAJ domain,	99.55
1fpo_A	171	HSC20, chaperone protein HSCB; molecular chaperone	99.54
1faf_A	79	Large T antigen; J domain, HPD motif, anti-paralle	99.53
3bvo_A	207	CO-chaperone protein HSCB, mitochondrial precurso;	99.53
3lz8_A	329	Putative chaperone DNAJ; structure genomics, struc	99.5
3uo3_A	181	J-type CO-chaperone JAC1, mitochondrial; structura	99.47
2guz_A	71	Mitochondrial import inner membrane translocase su	99.43
1iur_A	88	KIAA0730 protein; DNAJ like domain, riken structur	99.4
3apo_A	780	DNAJ homolog subfamily C member 10; PDI family, th	99.37
1n4c_A	182	Auxilin; four helix bundle, protein binding; NMR {	99.36
3ag7_A	106	Putative uncharacterized protein F9E10.5; J-domain	99.3
2qwo_B	92	Putative tyrosine-protein phosphatase auxilin; cha	99.22
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.77
2guz_B	65	Mitochondrial import inner membrane translocase su	98.35

>2o37_A Protein SIS1; HSP40, J-domain, cochaperone, APC90055.5, structural genomics, PSI-2, protein structure initiative; 1.25A {Saccharomyces cerevisiae}

Probab=99.78  E-value=2.3e-19  Score=119.88  Aligned_cols=67  Identities=34%  Similarity=0.596  Sum_probs=60.7

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCC-ChHHHHHHHHHHHHcCChhHHHHHHhhcccccCCC
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG-NGRDFTEIHNTYETLLDPKAKAVYDMSLVSRRRTR  102 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~-~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~~~  102 (131)
                      ...|||+||||+++++.++||+     ++++|||+++ +.++|++|++||++|+||.+|..||..+.......
T Consensus         6 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~~~   78 (92)
T 2o37_A            6 KETKLYDLLGVSPSANEQELKKGYRKAALKYHPDKPTGDTEKFKEISEAFEILNDPQKREIYDQYGLEAARSG   78 (92)
T ss_dssp             SCCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTSTTCCHHHHHHHHHHHHHHTSHHHHHHHHHHCHHHHHTT
T ss_pred             cCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHCCHHHHHHHHHHCHHHhhcc
Confidence            4679999999999999999999     9999999986 56799999999999999999999999988765543

>2och_A Hypothetical protein DNJ-12; HSP40, J-domain, chaperone, APC90013.2, structural genomics, protein structure initiative; 1.86A {Caenorhabditis elegans} PDB: 2lo1_A

Probab=99.76  E-value=8.9e-19  Score=112.18  Aligned_cols=62  Identities=34%  Similarity=0.567  Sum_probs=56.7

Q ss_pred             CCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-hHHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           35 GTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-GRDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-~~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      ....|||+||||+++++.++||+     ++++|||+++. .+.|++|++||++|+||.+|..||..|.
T Consensus         5 ~~~~~~y~iLgl~~~a~~~eIk~ayr~l~~~~HPD~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~   72 (73)
T 2och_A            5 VKETGYYDVLGVKPDASDNELKKAYRKMALKFHPDKNPDGAEQFKQISQAYEVLSDEKKRQIYDQGGE   72 (73)
T ss_dssp             -CCCCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCTTCHHHHHHHHHHHHHHTSHHHHHHHHHTC-
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCcCHHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence            35679999999999999999999     99999999885 5899999999999999999999999875

>2dn9_A DNAJ homolog subfamily A member 3; J-domain, TID1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=1.5e-18  Score=112.51  Aligned_cols=64  Identities=34%  Similarity=0.578  Sum_probs=58.3

Q ss_pred             CCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           35 GTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ....|||+||||+++++.++||+     ++++|||+++.    .+.|++|++||++|+||.+|..||..+..+
T Consensus         4 ~~~~~~y~iLgv~~~a~~~~Ik~ayr~l~~~~HPD~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   76 (79)
T 2dn9_A            4 GSSGDYYQILGVPRNASQKEIKKAYYQLAKKYHPDTNKDDPKAKEKFSQLAEAYEVLSDEVKRKQYDAYGSGP   76 (79)
T ss_dssp             SCCSCHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCSSCTTHHHHHHHHHHHHHHHHSHHHHHHHHHSCCCC
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhccCcC
Confidence            34679999999999999999999     99999999874    479999999999999999999999988653

>2ctr_A DNAJ homolog subfamily B member 9; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.74  E-value=3.1e-18  Score=113.45  Aligned_cols=64  Identities=38%  Similarity=0.524  Sum_probs=58.8

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhccccc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSRR   99 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~   99 (131)
                      ...|||+||||+++++.++||+     ++++|||+++.   .+.|++|++||++|+||.+|..||..+..+.
T Consensus         5 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   76 (88)
T 2ctr_A            5 SSGSYYDILGVPKSASERQIKKAFHKLAMKYHPDKNKSPDAEAKFREIAEAYETLSDANRRKEYDTLGHSAF   76 (88)
T ss_dssp             CCCSHHHHHTCCTTCCHHHHHHHHHHHHHHTCTTTCCSHHHHHHHHHHHHHHHHHHSSHHHHHHHHTCHHHH
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            4679999999999999999999     99999999985   4699999999999999999999999887644

>1hdj_A Human HSP40, HDJ-1; molecular chaperone; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.74  E-value=3.3e-18  Score=110.46  Aligned_cols=63  Identities=30%  Similarity=0.476  Sum_probs=57.6

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhccccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSRR   99 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~   99 (131)
                      ..|||+||||+++++.++||+     ++++|||+++.   .+.|++|++||++|+||.+|..||..+.++.
T Consensus         2 ~~~~y~iLgv~~~as~~~Ik~ayr~l~~~~HPD~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   72 (77)
T 1hdj_A            2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHHccccc
Confidence            368999999999999999999     99999999863   5799999999999999999999999987654

>2ej7_A HCG3 gene; HCG3 protein, DNAJ domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=3.2e-18  Score=111.66  Aligned_cols=63  Identities=33%  Similarity=0.488  Sum_probs=57.6

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh-----HHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG-----RDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~-----~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ...|||+||||+++++.++||+     ++++|||+++..     +.|++|++||++|+||.+|..||..+..+
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~~   79 (82)
T 2ej7_A            7 GMVDYYEVLDVPRQASSEAIKKAYRKLALKWHPDKNPENKEEAERRFKQVAEAYEVLSDAKKRDIYDRYGSGP   79 (82)
T ss_dssp             SSCCHHHHTTCCTTCCHHHHHHHHHHHHTTSCTTTCSTTHHHHHHHHHHHHHHHHHHSSTTHHHHHHHTCCCS
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            4679999999999999999999     999999998753     59999999999999999999999988654

>2dmx_A DNAJ homolog subfamily B member 8; DNAJ J domain, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=4.3e-18  Score=113.45  Aligned_cols=64  Identities=31%  Similarity=0.509  Sum_probs=58.2

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-----hHHHHHHHHHHHHcCChhHHHHHHhhccccc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-----GRDFTEIHNTYETLLDPKAKAVYDMSLVSRR   99 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~   99 (131)
                      ...|||+||||+++++.++||+     ++++|||+++.     .++|++|++||++|+||.+|..||..+...-
T Consensus         7 ~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~Yd~~~~~~~   80 (92)
T 2dmx_A            7 GMANYYEVLGVQASASPEDIKKAYRKLALRWHPDKNPDNKEEAEKKFKLVSEAYEVLSDSKKRSLYDRAGCDSW   80 (92)
T ss_dssp             CCCCHHHHHTCCTTCCTTHHHHHHHHHHHHTCTTTCSSCSHHHHHHHHHHHHHHHHHHSHHHHHHHHHHCSCSS
T ss_pred             CCcCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCcccc
Confidence            4679999999999999999999     99999999875     3699999999999999999999999886543

>2ctp_A DNAJ homolog subfamily B member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=2e-18  Score=111.75  Aligned_cols=64  Identities=30%  Similarity=0.501  Sum_probs=58.2

Q ss_pred             CCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           35 GTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ....|||+||||+++++.++||+     ++++|||++..   .+.|++|++||++|+||.+|..||..+..+
T Consensus         4 ~~~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~   75 (78)
T 2ctp_A            4 GSSGDYYEILGVSRGASDEDLKKAYRRLALKFHPDKNHAPGATEAFKAIGTAYAVLSNPEKRKQYDQFGSGP   75 (78)
T ss_dssp             SCSCCHHHHHTCCTTCCHHHHHHHHHHHHTTSCTTTCSSHHHHHHHHHHHHHHHHHTSHHHHHHHHHTCSCS
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCHHHHHHHHHcCccc
Confidence            34679999999999999999999     99999999864   479999999999999999999999988653

>2lgw_A DNAJ homolog subfamily B member 2; J domain, HSJ1A, CO-chaperon, chaperone; NMR {Homo sapiens}

Probab=99.72  E-value=3.7e-18  Score=115.74  Aligned_cols=63  Identities=32%  Similarity=0.513  Sum_probs=56.3

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-----hHHHHHHHHHHHHcCChhHHHHHHhhcccccC
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-----GRDFTEIHNTYETLLDPKAKAVYDMSLVSRRR  100 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~  100 (131)
                      .|||+||||+++++.++||+     ++++|||+++.     .+.|++|++||++|+||.+|..||..+..+..
T Consensus         2 ~d~Y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~a~~~f~~I~~AY~vL~d~~~R~~YD~~g~~~~~   74 (99)
T 2lgw_A            2 ASYYEILDVPRSASADDIKKAYRRKALQWHPDKNPDNKEFAEKKFKEVAEAYEVLSDKHKREIYDRYGREGLT   74 (99)
T ss_dssp             CCHHHHSSSCTTSCHHHHHHHHHHHHHHTSTTTCCSCCHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHC---
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCccHHHHHHHHHHHHHHHHHHCCHHHHHHHHHhCccccc
Confidence            58999999999999999999     99999999875     36999999999999999999999999876543

>2yua_A Williams-beuren syndrome chromosome region 18 protein; J domain, all helix protein, chaperone, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.72  E-value=6.7e-18  Score=114.15  Aligned_cols=62  Identities=35%  Similarity=0.578  Sum_probs=56.9

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ...|||+||||+++++.++||+     ++++|||+++.    .++|++|++||+||+||.+|..||..+..
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   85 (99)
T 2yua_A           15 SRTALYDLLGVPSTATQAQIKAAYYRQCFLYHPDRNSGSAEAAERFTRISQAYVVLGSATLRRKYDRGLLS   85 (99)
T ss_dssp             CSSHHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCSSCSHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCC
T ss_pred             CccCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccc
Confidence            3679999999999999999999     99999999874    57999999999999999999999997654

>2cug_A Mkiaa0962 protein; DNAJ-like domain, structural genomics, molecular chaperone, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=7.4e-18  Score=111.61  Aligned_cols=62  Identities=29%  Similarity=0.431  Sum_probs=57.2

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ...|||+||||+++++.++||+     ++++|||+++.   .+.|++|++||++|+||.+|..||..+..
T Consensus        15 ~~~d~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~g~~   84 (88)
T 2cug_A           15 LDFDPYRVLGVSRTASQADIKKAYKKLAREWHPDKNKDPGAEDRFIQISKAYEILSNEEKRTNYDHYGSG   84 (88)
T ss_dssp             SSSCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTCCSTTHHHHHHHHHHHHHHHHSHHHHHHHHHHTTC
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCChhHHHHHHHHHHHHHHHCCHHHHHHHHHcCCC
Confidence            3679999999999999999999     99999999873   47999999999999999999999998865

>2ctq_A DNAJ homolog subfamily C member 12; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.71  E-value=7.6e-18  Score=116.27  Aligned_cols=66  Identities=21%  Similarity=0.312  Sum_probs=60.1

Q ss_pred             CCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccccC
Q 038518           35 GTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSRRR  100 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~  100 (131)
                      ....|||+||||+++++.++||+     ++++|||+++.    .++|++|++||+||+||.+|..||..+..+..
T Consensus        17 ~~~~d~Y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~~~~   91 (112)
T 2ctq_A           17 EDTEDYYTLLGCDELSSVEQILAEFKVRALECHPDKHPENPKAVETFQKLQKAKEILTNEESRARYDHWRRSQMS   91 (112)
T ss_dssp             CCCCCHHHHTTCCTTSCHHHHHHHHHHHHHTTCTTTCTTCSTHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHTCS
T ss_pred             cCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHhhhhccC
Confidence            34689999999999999999999     99999999884    57999999999999999999999999877553

>1wjz_A 1700030A21RIK protein; J-domain, DNAJ like protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, chaperone; NMR {Mus musculus} SCOP: a.2.3.1

Probab=99.71  E-value=4.7e-18  Score=113.40  Aligned_cols=62  Identities=27%  Similarity=0.538  Sum_probs=56.9

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----------hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----------GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----------~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ...|||+||||+++++.++||+     ++++|||+++.          .+.|++|++||+||+||.+|..||..+..
T Consensus        14 ~~~~~y~iLgv~~~as~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~~~~~f~~i~~Ay~~L~d~~~R~~YD~~l~~   90 (94)
T 1wjz_A           14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             CCCChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCChhhhHHHHHHHHHHHHHHHHHCCHHHHHHHHHHccC
Confidence            4679999999999999999999     99999999762          36999999999999999999999998865

>2ctw_A DNAJ homolog subfamily C member 5; J-domain, chaperone, helix-turn-helix, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.71  E-value=2e-17  Score=113.66  Aligned_cols=63  Identities=35%  Similarity=0.502  Sum_probs=58.0

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ...|||+||||+++++.++||+     ++++|||+++.    .++|++|++||+||+||.+|..||..+..+
T Consensus        15 ~~~~~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   86 (109)
T 2ctw_A           15 SGESLYHVLGLDKNATSDDIKKSYRKLALKYHPDKNPDNPEAADKFKEINNAHAILTDATKRNIYDKYGSLG   86 (109)
T ss_dssp             CSCCHHHHHTCCTTCCHHHHHHHHHHHHHHSCTTTSTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHTCHHH
T ss_pred             CCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHhcccc
Confidence            3579999999999999999999     99999999985    479999999999999999999999988764

>1bq0_A DNAJ, HSP40; chaperone, heat shock, protein folding, DNAK; NMR {Escherichia coli} SCOP: a.2.3.1 PDB: 1xbl_A 1bqz_A

Probab=99.68  E-value=1.5e-17  Score=113.06  Aligned_cols=64  Identities=34%  Similarity=0.513  Sum_probs=58.2

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccccC
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSRRR  100 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~  100 (131)
                      ..|||+||||+++++.++||+     ++++|||+++.    .++|++|++||++|+||.+|..||..+.....
T Consensus         2 ~~~~y~iLgv~~~as~~eIk~ayr~l~~~~HPDk~~~~~~a~~~f~~i~~Ay~~L~d~~~R~~YD~~~~~~~~   74 (103)
T 1bq0_A            2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFE   74 (103)
T ss_dssp             CCCSTTTTSSCSSCCHHHHHHHHHHHHTTTCTTTCTTTCTHHHHHHHHTTTTTSTTCSHHHHHTTTSTTTSSC
T ss_pred             CCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhhhhhc
Confidence            469999999999999999999     99999999874    46999999999999999999999999877544

>2qsa_A DNAJ homolog DNJ-2; J-domain, HSP40, APC90001.8, structural genomics, PSI-2, Pro structure initiative; 1.68A {Caenorhabditis elegans}

Probab=99.67  E-value=2.8e-17  Score=112.64  Aligned_cols=64  Identities=33%  Similarity=0.422  Sum_probs=58.3

Q ss_pred             CCccCcccccccCCCC-CHHHHHH-----HHHhCCCCCCC-------hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           35 GTRGSLYEVLRVEPKA-TISEIKT-----AKVYHPDLSGN-------GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~a-~~~eIk~-----a~~~HPDk~~~-------~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      ....|||+||||++++ +.++||+     ++++|||++++       .+.|++|++||++|+||.+|..||..+...
T Consensus        12 ~~~~~~y~iLgv~~~a~s~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~i~~AY~~L~d~~~R~~YD~~~~~~   88 (109)
T 2qsa_A           12 CGLENCYDVLEVNREEFDKQKLAKAYRALARKHHPDRVKNKEEKLLAEERFRVIATAYETLKDDEAKTNYDYYLDHP   88 (109)
T ss_dssp             TTTSCHHHHTTCCGGGCCHHHHHHHHHHHHHHTCGGGCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHCT
T ss_pred             cCCCCHHHHcCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCccccHHHHHHHHHHHHHHHHHCCHHHHHHHHHhccCc
Confidence            3477999999999999 9999999     99999999875       469999999999999999999999988653

>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}

Probab=99.65  E-value=9.3e-17  Score=116.17  Aligned_cols=63  Identities=29%  Similarity=0.551  Sum_probs=57.3

Q ss_pred             CCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh----------HHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           35 GTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG----------RDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~----------~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ....|||+||||+++++.++||+     ++++|||+++..          +.|++|++||+||+||.+|+.||..+..
T Consensus         7 ~~~~~~y~iLgv~~~a~~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~~a~~~f~~i~~Ay~~L~dp~~R~~Yd~~~~~   84 (155)
T 2l6l_A            7 MPKKDWYSILGADPSANISDLKQKYQKLILMYHPDKQSTDVPAGTVEECVQKFIEIDQAWKILGNEETKREYDLQRCE   84 (155)
T ss_dssp             CCCSHHHHHHTCCTTCCHHHHHHHHHHHHHHHSCCCCCCCCTTHHHHHHHHHHHHHHHHHHHSSSHHHHCHHHHHHHH
T ss_pred             CCCCChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHcch
Confidence            34679999999999999999999     999999998743          6999999999999999999999987765

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=99.61  E-value=6e-16  Score=114.95  Aligned_cols=63  Identities=32%  Similarity=0.429  Sum_probs=57.5

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccccC
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSRRR  100 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~  100 (131)
                      .|||+||||+++++.++||+     ++++|||+++.    .++|++|++||++|+||.+|+.||..+..+..
T Consensus         2 ~~~y~~l~~~~~a~~~~ik~ay~~l~~~~HPD~~~~~~~~~~~f~~i~~Ay~~L~~~~~r~~yd~~~~~~~~   73 (210)
T 3apq_A            2 QNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   73 (210)
T ss_dssp             CCHHHHHTCCTTCCHHHHHHHHHHHHHHHCGGGCTTCTTHHHHHHHHHHHHHHHTSHHHHHHHHHHTTTTCC
T ss_pred             CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccc
Confidence            58999999999999999999     99999999863    46999999999999999999999999876543

>1gh6_A Large T antigen; tumor suppressor, oncoprotein, antitumor protein; 3.20A {Simian virus 40} SCOP: a.2.3.1

Probab=99.60  E-value=3.1e-17  Score=113.99  Aligned_cols=60  Identities=20%  Similarity=0.221  Sum_probs=56.2

Q ss_pred             ccCcccccccCCCCCH--HHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           37 RGSLYEVLRVEPKATI--SEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~--~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      ..++|+||||+++++.  ++||+     ++++|||+++..++|++|++||+||+||.+|+.||.++.
T Consensus         7 ~~~~Y~iLgv~~~as~~~~eIk~aYr~la~~~HPDk~~~~e~f~~I~~AYevL~d~~~R~~~~~~~~   73 (114)
T 1gh6_A            7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG   73 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSC
T ss_pred             hhhHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHHCCHHHHHHhhhccc
Confidence            4589999999999999  99999     999999999999999999999999999999999997654

>2pf4_E Small T antigen; PP2A, SV40, DNAJ, aalpha subunit, hydrolase regulat protein complex; 3.10A {Simian virus 40} PDB: 2pkg_C

Probab=99.56  E-value=1.5e-16  Score=117.86  Aligned_cols=60  Identities=22%  Similarity=0.268  Sum_probs=53.9

Q ss_pred             ccCcccccccCCCCC--HHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           37 RGSLYEVLRVEPKAT--ISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~--~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      ..|+|+||||+++++  .++||+     ++++|||+++++++|++|++||++|+||.+|+.||.+|.
T Consensus        10 ~~d~Y~vLGl~~~as~~~~eIKkAYRkLa~~~HPDk~~~~e~F~~I~~AYevLsdp~kR~~YD~~G~   76 (174)
T 2pf4_E           10 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGG   76 (174)
T ss_dssp             HHHHHHTTTCCGGGTTCHHHHHHHHHHHGGGCSCC---CCTTTTHHHHHHHHHHHHHHHHTSCGGGG
T ss_pred             cccHHHHcCCCCCCCcCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHhCCHHHHHHHhccCC
Confidence            468999999999998  699999     999999999999999999999999999999999999886

>2ys8_A RAB-related GTP-binding protein RABJ; DNAJ domain, RAS-associated protein RAP1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=1.2e-15  Score=101.46  Aligned_cols=55  Identities=24%  Similarity=0.369  Sum_probs=49.8

Q ss_pred             CCccCcccccccCCCCCHHHHHH-----HHHhCCCCCC---ChHHHHHHHHHHHHcCChhHHH
Q 038518           35 GTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSG---NGRDFTEIHNTYETLLDPKAKA   89 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~---~~~~f~~i~~Ay~vL~dp~~R~   89 (131)
                      ....|||+||||+++++.++||+     ++++|||+++   +.++|++|++||++|+||.+|.
T Consensus        24 ~~~~~~y~iLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~~~~~f~~i~~Ay~~L~d~~~R~   86 (90)
T 2ys8_A           24 RNSKDSWDMLGVKPGASRDEVNKAYRKLAVLLHPDKCVAPGSEDAFKAVVNARTALLKNIKSG   86 (90)
T ss_dssp             HTCSSHHHHHTCCTTCCHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHHHHHHHCCS
T ss_pred             hcCCCHHHHcCcCCCCCHHHHHHHHHHHHHHHCcCCCCCccHHHHHHHHHHHHHHHCCccccc
Confidence            34689999999999999999999     9999999985   4579999999999999998764

>1fpo_A HSC20, chaperone protein HSCB; molecular chaperone; 1.80A {Escherichia coli} SCOP: a.2.3.1 a.23.1.1

Probab=99.54  E-value=2.5e-15  Score=110.79  Aligned_cols=59  Identities=22%  Similarity=0.442  Sum_probs=54.2

Q ss_pred             CcccccccCCCC--CHHHHHH-----HHHhCCCCCCCh---------HHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           39 SLYEVLRVEPKA--TISEIKT-----AKVYHPDLSGNG---------RDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        39 ~~Y~iLgv~~~a--~~~eIk~-----a~~~HPDk~~~~---------~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      |||+||||++++  +..+||+     ++++|||++++.         +.|..|++||+||+||.+|..||..+.+
T Consensus         2 d~y~lLgl~~~a~i~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vL~dp~~R~~Yd~~l~g   76 (171)
T 1fpo_A            2 DYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLHG   76 (171)
T ss_dssp             HHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTTT
T ss_pred             CHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHhcC
Confidence            799999999999  9999999     999999998742         4899999999999999999999998753

>1faf_A Large T antigen; J domain, HPD motif, anti-parallel hairpin of helices, viral protein; NMR {Murine polyomavirus} SCOP: a.2.3.1

Probab=99.53  E-value=1.3e-15  Score=99.29  Aligned_cols=54  Identities=17%  Similarity=0.308  Sum_probs=51.0

Q ss_pred             cCcccccccCCC--CCHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCChhHHHHH
Q 038518           38 GSLYEVLRVEPK--ATISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVY   91 (131)
Q Consensus        38 ~~~Y~iLgv~~~--a~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~dp~~R~~Y   91 (131)
                      .++|+||||+++  ++.++||+     ++++|||++++.++|++|++||++|+|+.+|..+
T Consensus        11 ~~~y~iLgl~~~~~a~~~eIk~aYr~la~~~HPDk~~~~~~f~~i~~AYe~L~~~~~r~~~   71 (79)
T 1faf_A           11 ERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRM   71 (79)
T ss_dssp             HHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence            578999999999  99999999     9999999999999999999999999999988873

>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}

Probab=99.53  E-value=5.3e-15  Score=112.07  Aligned_cols=61  Identities=18%  Similarity=0.452  Sum_probs=54.2

Q ss_pred             CccCcccccccCCC--CCHHHHHH-----HHHhCCCCCCC---------hHHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           36 TRGSLYEVLRVEPK--ATISEIKT-----AKVYHPDLSGN---------GRDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~--a~~~eIk~-----a~~~HPDk~~~---------~~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      ...|||+||||+++  ++..+||+     ++++|||++++         .++|++|++||+||+||.+|+.||..+.
T Consensus        41 ~~~d~y~lLgv~~~~~a~~~eIk~aYr~L~~~~HPDk~~~~~~~e~~~a~~~f~~In~AY~vLsdp~~R~~Yd~~l~  117 (207)
T 3bvo_A           41 PTRDYFSLMDCNRSFRVDTAKLQHRYQQLQRLVHPDFFSQRSQTEKDFSEKHSTLVNDAYKTLLAPLSRGLYLLKLH  117 (207)
T ss_dssp             TTCCHHHHTTSCSCSCCCHHHHHHHHHHHHHHHCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHT
T ss_pred             CCCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHhc
Confidence            46799999999986  78999999     99999999873         2479999999999999999999997654

>3lz8_A Putative chaperone DNAJ; structure genomics, structural genomics, PSI-2, protein STRU initiative; 2.90A {Klebsiella pneumoniae subsp} PDB: 2kqx_A

Probab=99.50  E-value=1.4e-15  Score=122.15  Aligned_cols=61  Identities=33%  Similarity=0.584  Sum_probs=0.0

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC---hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN---GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~---~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ..|||+||||+++|+.+|||+     ++++|||+++.   .++|++|++||++|+||.+|+.||.++..
T Consensus        27 ~~d~Y~vLgv~~~as~~eIk~aYr~la~~~HPDk~~~~~a~~~f~~i~~Ay~vL~d~~~R~~YD~~~~~   95 (329)
T 3lz8_A           27 LKDYYAILGVQPTDDLKTIKTAYRRLARKYHPDVSKENDAEAKFKDLAEAWEVLKDEQRRAEYDQLWQH   95 (329)
T ss_dssp             ---------------------------------------------------------------------
T ss_pred             ccCHHHHcCcCCCCCHHHHHHHHHHHHHHHCCCCCCChHHHHHHHHHHHHHHHhhhhhhhcccchhhcc
Confidence            469999999999999999999     99999999874   57999999999999999999999998543

>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A

Probab=99.47  E-value=1.6e-14  Score=107.38  Aligned_cols=61  Identities=21%  Similarity=0.448  Sum_probs=55.2

Q ss_pred             CCccCccccc------ccCC-CCCHHHHHH-----HHHhCCCCCC-ChHHHHHHHHHHHHcCChhHHHHHHhhc
Q 038518           35 GTRGSLYEVL------RVEP-KATISEIKT-----AKVYHPDLSG-NGRDFTEIHNTYETLLDPKAKAVYDMSL   95 (131)
Q Consensus        35 ~~~~~~Y~iL------gv~~-~a~~~eIk~-----a~~~HPDk~~-~~~~f~~i~~Ay~vL~dp~~R~~YD~~~   95 (131)
                      ....|||+||      |+++ +++..+||+     ++++|||+++ +.+.|++|++||+||+||.+|..||..+
T Consensus         8 ~~~~d~y~ll~~~~p~~~~~~~a~~~eIk~aYr~la~~~HPDk~~~a~~~f~~i~~AY~vL~dp~~R~~Yd~~l   81 (181)
T 3uo3_A            8 RFTSTFYELFPKTFPKKLPIWTIDQSRLRKEYRQLQAQHHPDMAQQGSEQSSTLNQAYHTLKDPLRRSQYMLKL   81 (181)
T ss_dssp             CCSCCTGGGCTTTCTTCSCCSCCCHHHHHHHHHHHHHTCCTTSCCSCSSGGGSHHHHHHHHHSHHHHHHHHHHH
T ss_pred             CCCCCHHHHhccccccCCCCCCCCHHHHHHHHHHHHHHhCcCCCccHHHHHHHHHHHHHHHcChHHHHHHHHHH
Confidence            3467999999      4665 899999999     9999999988 6789999999999999999999999977

>2guz_A Mitochondrial import inner membrane translocase subunit TIM14; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=99.43  E-value=1.9e-14  Score=91.75  Aligned_cols=51  Identities=20%  Similarity=0.207  Sum_probs=47.2

Q ss_pred             cCcccccccCC-CCCHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCChhHH
Q 038518           38 GSLYEVLRVEP-KATISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLDPKAK   88 (131)
Q Consensus        38 ~~~Y~iLgv~~-~a~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~dp~~R   88 (131)
                      .++|+||||++ +++.++||+     ++++|||++++.+.|++|++||++|+|+..|
T Consensus        14 ~~~y~iLgl~~~~a~~~eIk~ayr~l~~~~HPDk~g~~~~f~~i~~Aye~L~~~~~r   70 (71)
T 2guz_A           14 KEALQILNLTENTLTKKKLKEVHRKIMLANHPDKGGSPFLATKINEAKDFLEKRGIS   70 (71)
T ss_dssp             HHHHHHTTCCTTTCCHHHHHHHHHHHHHHHCGGGTCCHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHcCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHhhhhhc
Confidence            58899999999 799999999     9999999998999999999999999987654

>1iur_A KIAA0730 protein; DNAJ like domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Homo sapiens} SCOP: a.2.3.1

Probab=99.40  E-value=3.5e-14  Score=94.34  Aligned_cols=53  Identities=21%  Similarity=0.165  Sum_probs=47.8

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-----hHHHHHHHHHHHHcCChhHH
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-----GRDFTEIHNTYETLLDPKAK   88 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-----~~~f~~i~~Ay~vL~dp~~R   88 (131)
                      ...++|+||||.++++.++||+     ++++|||+++.     .++|++|++||++|+|...|
T Consensus        14 ~~~~~y~vLgv~~~as~~eIKkaYrkla~~~HPDk~~~~~~~a~~~F~~I~~AYevL~~~~~r   76 (88)
T 1iur_A           14 ILKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLEKQAFL   76 (88)
T ss_dssp             CHHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCchHHHHHHHHHHHHHHHHHHhhccc
Confidence            3568999999999999999999     99999999986     46999999999999987655

>3apo_A DNAJ homolog subfamily C member 10; PDI family, thioredoxin, endoplasmic reticulum, oxidoreducta; 2.40A {Mus musculus}

Probab=99.37  E-value=7e-14  Score=121.03  Aligned_cols=66  Identities=30%  Similarity=0.401  Sum_probs=36.7

Q ss_pred             CCccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccccC
Q 038518           35 GTRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSRRR  100 (131)
Q Consensus        35 ~~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~~  100 (131)
                      ....|||+||||+++++.++||+     ++++|||+++.    .++|++|++||++|+||.+|+.||.++..+..
T Consensus        18 ~~~~~~y~~lg~~~~a~~~~i~~ay~~l~~~~hpd~~~~~~~~~~~f~~i~~ay~~L~~~~~r~~yd~~~~~~~~   92 (780)
T 3apo_A           18 RHDQNFYSLLGVSKTASSREIRQAFKKLALKLHPDKNPNNPNAHGDFLKINRAYEVLKDEDLRKKYDKYGEKGLE   92 (780)
T ss_dssp             -----CHHHHTCCTTCCHHHHHHHHCC-----------------------CTHHHHHHSHHHHHHHTTC------
T ss_pred             CCCCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCChHHHHHHHHHHHHHHHHcChHHHHHHHhhcccccc
Confidence            34679999999999999999999     99999999863    46999999999999999999999999876543

>1n4c_A Auxilin; four helix bundle, protein binding; NMR {Bos taurus} SCOP: a.2.3.1 PDB: 1xi5_J

Probab=99.36  E-value=5.9e-14  Score=104.51  Aligned_cols=54  Identities=19%  Similarity=0.337  Sum_probs=49.6

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-------hHHHHHHHHHHHHcCChhHHHHH
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-------GRDFTEIHNTYETLLDPKAKAVY   91 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-------~~~f~~i~~Ay~vL~dp~~R~~Y   91 (131)
                      .|+|+||||+++++.++||+     ++++|||+++.       .++|++|++||+||+||.+|..|
T Consensus       117 ~d~Y~vLgv~~~As~~eIKkAYRklal~~HPDK~~~~~~e~~A~~~F~~I~eAYevLsD~~kR~~Y  182 (182)
T 1n4c_A          117 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY  182 (182)
T ss_dssp             CCCCCCCCGGGGSSHHHHHHHHHHHHHHTCGGGGSSCTTHHHHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred             cchhhcCCCCCCCCHHHHHHHHHHHHHHHCcCcCCCcchHHHHHHHHHHHHHHHHHHCCHHhhhhC
Confidence            59999999999999999999     99999999763       35999999999999999998766

>3ag7_A Putative uncharacterized protein F9E10.5; J-domain, AN auxilin-like J-domain containing protein, JAC1, chloroplast accumulation response; 1.80A {Arabidopsis thaliana}

Probab=99.30  E-value=4.8e-13  Score=91.61  Aligned_cols=49  Identities=10%  Similarity=0.158  Sum_probs=44.2

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-----------hHHHHHHHHHHHHcCChh
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-----------GRDFTEIHNTYETLLDPK   86 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-----------~~~f~~i~~Ay~vL~dp~   86 (131)
                      ..|||+|||++. ++.++||+     ++++|||++++           +++|++|++||++|+|+.
T Consensus        40 ~~d~Y~vl~~~~-As~~eIKkAYRklal~~HPDK~~~~~~~~e~~~~A~~~F~~I~~AYevLsd~~  104 (106)
T 3ag7_A           40 GSGWKPVPLMDM-IEGNAVRKSYQRALLILHPDKLQQKGASANQKYMAEKVFELLQEAWDHFNTLG  104 (106)
T ss_dssp             TSCCCCCCGGGS-CSHHHHHHHHHHHHHHHCHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCHHHHcCCCC-CCHHHHHHHHHHHHHHHCcCcCCCcccchhhHHHHHHHHHHHHHHHHHHcCcc
Confidence            479999999996 99999999     99999999752           469999999999999975

>2qwo_B Putative tyrosine-protein phosphatase auxilin; chaperone-cochaperone complex, ATP-binding, nucleotide-bindi nucleus, phosphorylation, stress response; HET: ADP; 1.70A {Bos taurus} PDB: 2qwp_B* 2qwq_B* 2qwr_B* 2qwn_B* 1nz6_A

Probab=99.22  E-value=1.3e-12  Score=87.49  Aligned_cols=47  Identities=15%  Similarity=0.249  Sum_probs=42.6

Q ss_pred             cCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-------hHHHHHHHHHHHHcCC
Q 038518           38 GSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-------GRDFTEIHNTYETLLD   84 (131)
Q Consensus        38 ~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-------~~~f~~i~~Ay~vL~d   84 (131)
                      .++|++|||++.++.++||+     ++++|||++++       +++|++|++||+||.+
T Consensus        33 ~~~y~~Lgv~~~as~~eIKkAYRklal~~HPDK~~~~~~~~~A~~~F~~i~eAyevL~~   91 (92)
T 2qwo_B           33 ETKWKPVGMADLVTPEQVKKVYRKAVLVVHPCKATGQPYEQYAKMIFMELNDAWSEFEN   91 (92)
T ss_dssp             CCSCCCCCGGGSSSHHHHHHHHHHHHHHTCHHHHTTSTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccCCeecCCCCCCCHHHHHHHHHHHHHHHCcCCCCCchhHhHHHHHHHHHHHHHHHHHh
Confidence            47899999999999999999     99999999874       3589999999999964

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.77  E-value=3.4e-09  Score=83.10  Aligned_cols=57  Identities=32%  Similarity=0.497  Sum_probs=47.1

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh-------HHHHHHHHHHHHcCChhHHHHHHh
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG-------RDFTEIHNTYETLLDPKAKAVYDM   93 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~-------~~f~~i~~Ay~vL~dp~~R~~YD~   93 (131)
                      ..++|++||+.+.++.++|++     ++++|||+.+..       +.|++|++||++|+||++|..||.
T Consensus       381 ~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~~yd~  449 (450)
T 2y4t_A          381 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDD  449 (450)
T ss_dssp             SCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-----
T ss_pred             chhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHHhccC
Confidence            458999999999999999887     889999998753       499999999999999999999997

>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}

Probab=98.35  E-value=2.8e-07  Score=57.67  Aligned_cols=45  Identities=16%  Similarity=0.144  Sum_probs=41.6

Q ss_pred             cccccccCCC---CCHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCC
Q 038518           40 LYEVLRVEPK---ATISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLD   84 (131)
Q Consensus        40 ~Y~iLgv~~~---a~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~d   84 (131)
                      -|.||||+++   ++.++|++     ...+|||++++.-...+|++|.++|..
T Consensus         6 A~~ILgv~~~~~~a~~~~Ik~~yr~Lm~~nhPDkGGS~yl~~ki~~Ake~l~~   58 (65)
T 2guz_B            6 SCKILNIEESKGDLNMDKINNRFNYLFEVNDKEKGGSFYLQSKVYRAAERLKW   58 (65)
T ss_dssp             HHHHTTCCGGGTCCSHHHHHHHHHHHHHHTCGGGTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCcCcCCHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            4789999999   99999999     999999999999999999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	131
d1fafa_	79	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	4e-08
d1fpoa1	76	a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) doma	3e-07
d1wjza_	94	a.2.3.1 (A:) CSL-type zinc finger-containing prote	6e-07
d1xbla_	75	a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain	8e-07
d1hdja_	77	a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9	6e-06
d1gh6a_	114	a.2.3.1 (A:) Large T antigen, the N-terminal J dom	6e-06
d1nz6a_	98	a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [T	4e-05

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]} Length = 79

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

 Score = 45.4 bits (107), Expect = 4e-08
 Identities = 11/70 (15%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 31 VMALGTRGSLYEVLRVEPKATIS--EIKTA-----KVYHPDLSGNGRDFTEIHNTYETLL 83
          V++   +  L E+L++  +       ++ A      + HPD  G+     E+++ + T  
Sbjct: 4  VLSRADKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFK 63

Query: 84 DPKAKAVYDM 93
                  ++
Sbjct: 64 TEVYNLRMNL 73

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 76

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 42.7 bits (100), Expect = 3e-07
 Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 16/71 (22%)

Query: 41 YEVLRVEPKATIS--EIKTA-----KVYHPDLSGNGRD---------FTEIHNTYETLLD 84
          + +  +  +  +    +        + YHPD   +G              I+  ++TL  
Sbjct: 4  FTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRH 63

Query: 85 PKAKAVYDMSL 95
          P  +A Y +SL
Sbjct: 64 PLMRAEYLLSL 74

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (100), Expect = 6e-07
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 15/68 (22%)

Query: 41 YEVLRVEPKATISEIKTA-----KVYHPDLSGNGRD----------FTEIHNTYETLLDP 85
          Y +L  +P A +S++K        +YHPD                 F EI   ++ L + 
Sbjct: 19 YSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNE 78

Query: 86 KAKAVYDM 93
          + K  YD+
Sbjct: 79 ETKKKYDL 86

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]} Length = 75

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (98), Expect = 8e-07
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 9/63 (14%)

Query: 40 LYEVLRVEPKATISEIKTA---------KVYHPDLSGNGRDFTEIHNTYETLLDPKAKAV 90
           YE+L V   A   EI+ A            +         F EI   YE L D + +A 
Sbjct: 5  YYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAA 64

Query: 91 YDM 93
          YD 
Sbjct: 65 YDQ 67

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (92), Expect = 6e-06
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 41 YEVLRVEPKATISEIK-----TAKVYHPDLSGNGRDF---TEIHNTYETLLDPKAKAVYD 92
          Y+ L +   A+  EIK      A  YHPD +          EI   Y+ L DP+ + ++D
Sbjct: 6  YQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFD 65

Query: 93 M 93
           
Sbjct: 66 R 66

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]} Length = 114

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

 Score = 40.2 bits (93), Expect = 6e-06
 Identities = 13/60 (21%), Positives = 26/60 (43%), Gaps = 7/60 (11%)

Query: 40 LYEVLRVEPKATIS--EIKTA-----KVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYD 92
          L ++L +E  A  +   ++ A     K +HPD  G+     +++  Y+ + D    A   
Sbjct: 10 LMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQP 69

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 38.0 bits (88), Expect = 4e-05
 Identities = 10/65 (15%), Positives = 24/65 (36%), Gaps = 12/65 (18%)

Query: 39 SLYEVLRVEPKATISEIKTA-----KVYHPDLSGN-------GRDFTEIHNTYETLLDPK 86
          + ++ + +    T  ++K        V HPD +            F E+++ +    +  
Sbjct: 34 TKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQG 93

Query: 87 AKAVY 91
           K +Y
Sbjct: 94 QKPLY 98

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	131
d1xbla_	75	DnaJ chaperone, N-terminal (J) domain {Escherichia	99.81
d1hdja_	77	HSP40 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1wjza_	94	CSL-type zinc finger-containing protein 3 (J-domai	99.72
d1gh6a_	114	Large T antigen, the N-terminal J domain {Simian v	99.71
d1fafa_	79	Large T antigen, the N-terminal J domain {Murine p	99.61
d1fpoa1	76	HSC20 (HSCB), N-terminal (J) domain {Escherichia c	99.57
d1iura_	88	Hypothetical protein KIAA0730 {Human (Homo sapiens	99.35
d1nz6a_	98	Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}	99.31

>d1xbla_ a.2.3.1 (A:) DnaJ chaperone, N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: DnaJ chaperone, N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.81  E-value=3.1e-20  Score=118.70  Aligned_cols=62  Identities=35%  Similarity=0.545  Sum_probs=56.9

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----hHHHHHHHHHHHHcCChhHHHHHHhhcccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----GRDFTEIHNTYETLLDPKAKAVYDMSLVSR   98 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~   98 (131)
                      .+|||+||||+++++.++||+     ++++|||+++.    ++.|.+|++||+||+||.+|..||.+|..+
T Consensus         2 k~dyY~vLgv~~~As~~eIk~aYr~l~~~~HPDk~~~~~~~~~~f~~i~~Ay~vL~d~~~R~~YD~~g~~~   72 (75)
T d1xbla_           2 KQDYYEILGVSKTAEEREIRKAYKRLAMKYHPDRNQGDKEAEAKFKEIKEAYEVLTDSQKRAAYDQYGHAA   72 (75)
T ss_dssp             CCCTTTTTCCSSSCCHHHHHHHHHHHHHHTCCTTCTTTCHHHHHHHHHHHHHHHTTSSHHHHHHHHHTTSS
T ss_pred             CCCHHHHcCCCCCcCHHHHHHHHHHHHhhhhhhccCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHhCccc
Confidence            579999999999999999999     99999999874    358999999999999999999999998653

>d1hdja_ a.2.3.1 (A:) HSP40 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSP40
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.2e-19  Score=113.74  Aligned_cols=63  Identities=30%  Similarity=0.472  Sum_probs=57.6

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCCh---HHHHHHHHHHHHcCChhHHHHHHhhccccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGNG---RDFTEIHNTYETLLDPKAKAVYDMSLVSRR   99 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~~---~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~   99 (131)
                      .+|||+||||+++++.++|++     ++++|||++...   +.|..|++||+||+||.+|+.||.++..+.
T Consensus         2 ~kdyY~iLgv~~~as~~eIk~ay~~l~~~~hPD~~~~~~~~~~~~~i~~Ay~vLsdp~~R~~YD~~g~~~~   72 (77)
T d1hdja_           2 GKDYYQTLGLARGASDEEIKRAYRRQALRYHPDKNKEPGAEEKFKEIAEAYDVLSDPRKREIFDRYGEEGL   72 (77)
T ss_dssp             CCCSHHHHTCCTTCCHHHHHHHHHHHHHTTCTTTCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHTCGGGC
T ss_pred             CCChHHHcCCCCCcCHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhh
Confidence            369999999999999999999     999999998753   689999999999999999999999887754

>d1wjza_ a.2.3.1 (A:) CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: CSL-type zinc finger-containing protein 3 (J-domain protein DjC7, 1700030a21RIK)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.7e-18  Score=114.94  Aligned_cols=62  Identities=27%  Similarity=0.538  Sum_probs=55.7

Q ss_pred             CccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC----------hHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           36 TRGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN----------GRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~----------~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ...|||+||||+++++.++||+     ++++|||++..          .+.|+.|++||+||+||.+|+.||.....
T Consensus        14 ~~~d~Y~iLgv~~~as~~eIk~aY~~l~~~~HPDk~~~~~~~~~~~~a~~~f~~I~~Ay~vL~d~~~R~~YD~~~~~   90 (94)
T d1wjza_          14 LKKDWYSILGADPSANMSDLKQKYQKLILLYHPDKQSADVPAGTMEECMQKFIEIDQAWKILGNEETKKKYDLQRSG   90 (94)
T ss_dssp             SCSCHHHHTTCCTTCCHHHHHHHHHHTTSSSCSTTCCTTCCHHHHHHHHHHHHHHHHHHHHHSSSSHHHHHHHHSCC
T ss_pred             hccChHHHcCCCCCcCHHHHHHHHHHHHHHhhhhhccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHccCC
Confidence            3579999999999999999999     99999999763          25899999999999999999999987653

>d1gh6a_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Simian virus 40, Sv40 [TaxId: 10633]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Simian virus 40, Sv40 [TaxId: 10633]

Probab=99.71  E-value=1.8e-19  Score=123.29  Aligned_cols=61  Identities=21%  Similarity=0.270  Sum_probs=56.7

Q ss_pred             ccCcccccccCCCC--CHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCChhHHHHHHhhccc
Q 038518           37 RGSLYEVLRVEPKA--TISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLVS   97 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a--~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~   97 (131)
                      ..+||+||||+++|  +.++||+     ++++|||++++.++|++|++||+||+||.+|+.||..+..
T Consensus         7 ~~~ly~iLGv~~~a~~~~~~IKkAYrkla~k~HPDk~~~~e~F~~I~~AY~vLsd~~kR~~YD~~~~~   74 (114)
T d1gh6a_           7 SLQLMDLLGLERSAWGNIPLMRKAYLKKCKEFHPDKGGDEEKMKKMNTLYKKMEDGVKYAHQPDFGGF   74 (114)
T ss_dssp             HHHHHHHTTCCTTSCSCHHHHHHHHHHTTTTCCTTTCCTTTTTHHHHHHHHHHHHHHHSCCSSCCSCC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHhCCHHHHHHHhccCCC
Confidence            56899999999998  7889999     9999999999999999999999999999999999976644

>d1fafa_ a.2.3.1 (A:) Large T antigen, the N-terminal J domain {Murine polyomavirus [TaxId: 10634]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Large T antigen, the N-terminal J domain
species: Murine polyomavirus [TaxId: 10634]

Probab=99.61  E-value=1.8e-17  Score=106.82  Aligned_cols=61  Identities=15%  Similarity=0.284  Sum_probs=56.1

Q ss_pred             CccCcccccccCCCC--CHHHHHH-----HHHhCCCCCCChHHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           36 TRGSLYEVLRVEPKA--TISEIKT-----AKVYHPDLSGNGRDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        36 ~~~~~Y~iLgv~~~a--~~~eIk~-----a~~~HPDk~~~~~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      ...++|+||||++++  +.++||+     ++++|||+++++++|++|++||++|+|+.+|..||..+.
T Consensus         9 ~~~~~y~iLgl~~~~~~~~~~IkkaYr~l~~~~HPDk~g~~e~~~~in~Ay~~L~d~~~r~~~~~~~~   76 (79)
T d1fafa_           9 DKERLLELLKLPRQLWGDFGRMQQAYKQQSLLLHPDKGGSHALMQELNSLWGTFKTEVYNLRMNLGGT   76 (79)
T ss_dssp             HHHHHHHHHTCCSSSTTCHHHHHHHHHHHHHHSSGGGSCCHHHHHHHHHHHHHHHHHHHHHTTCCSSC
T ss_pred             HHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHhCcccCCCHHHHHHHHHHHHHHCCHHHHHHHccCCC
Confidence            356899999999988  9999999     999999999999999999999999999999999987553

>d1fpoa1 a.2.3.1 (A:1-76) HSC20 (HSCB), N-terminal (J) domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: HSC20 (HSCB), N-terminal (J) domain
species: Escherichia coli [TaxId: 562]

Probab=99.57  E-value=4.9e-16  Score=98.84  Aligned_cols=59  Identities=20%  Similarity=0.370  Sum_probs=51.2

Q ss_pred             cCcccccccCCC--CCHHHHHH-----HHHhCCCCCCC---------hHHHHHHHHHHHHcCChhHHHHHHhhcc
Q 038518           38 GSLYEVLRVEPK--ATISEIKT-----AKVYHPDLSGN---------GRDFTEIHNTYETLLDPKAKAVYDMSLV   96 (131)
Q Consensus        38 ~~~Y~iLgv~~~--a~~~eIk~-----a~~~HPDk~~~---------~~~f~~i~~Ay~vL~dp~~R~~YD~~~~   96 (131)
                      .|||+||||+++  ++.++||+     ++++|||+...         .+.|..|++||+||+||.+|..|+..+.
T Consensus         1 lnyy~lLgl~~~~~~d~~eIk~aYr~l~~~~HPDk~~~~~~~~~~~a~~~~~~i~~Ay~vL~dp~~R~~Yll~l~   75 (76)
T d1fpoa1           1 MDYFTLFGLPARYQLDTQALSLRFQDLQRQYHPDKFASGSQAEQLAAVQQSATINQAWQTLRHPLMRAEYLLSLH   75 (76)
T ss_dssp             CHHHHHTTCCSSSCCCHHHHHHHHHHHHHHTCGGGGTTSCHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHTT
T ss_pred             CChHHHCCCCCCCCCCHHHHHHHHHHHHHHhCccccccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc
Confidence            389999999986  45899999     99999999652         2588999999999999999999997664

>d1iura_ a.2.3.1 (A:) Hypothetical protein KIAA0730 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Hypothetical protein KIAA0730
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=7.2e-14  Score=91.32  Aligned_cols=60  Identities=22%  Similarity=0.191  Sum_probs=50.8

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-----hHHHHHHHHHHHHcCChhHHHHHHhhccccc
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-----GRDFTEIHNTYETLLDPKAKAVYDMSLVSRR   99 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-----~~~f~~i~~Ay~vL~dp~~R~~YD~~~~~~~   99 (131)
                      ..++|+||||..+++.+|||+     ++++|||+++.     +++|+.|++||++|+   ++..||..+....
T Consensus        15 ~~~~y~iL~v~~~as~~eIKkAYrrl~~~~HPDk~~~~~~~a~~~f~~i~~Ay~~L~---~~~~~d~~~~~~~   84 (88)
T d1iura_          15 LKEVTSVVEQAWKLPESERKKIIRRLYLKWHPDKNPENHDIANEVFKHLQNEINRLE---KQAFLDQNADRAS   84 (88)
T ss_dssp             HHHHHHHHHHTTSSCSHHHHHHHHHHHHHTCTTTSSSCHHHHHHHHHHHHHHHHHHH---HHTTCSSSSSCSC
T ss_pred             HHHHHHHhCCCCCCCHHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHH---HHHHhhccchHhh
Confidence            468999999999999999999     99999999884     358999999999996   4666776655443

>d1nz6a_ a.2.3.1 (A:) Auxilin J-domain {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Chaperone J-domain
family: Chaperone J-domain
domain: Auxilin J-domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.31  E-value=4.9e-14  Score=93.77  Aligned_cols=55  Identities=18%  Similarity=0.325  Sum_probs=49.3

Q ss_pred             ccCcccccccCCCCCHHHHHH-----HHHhCCCCCCC-------hHHHHHHHHHHHHcCChhHHHHH
Q 038518           37 RGSLYEVLRVEPKATISEIKT-----AKVYHPDLSGN-------GRDFTEIHNTYETLLDPKAKAVY   91 (131)
Q Consensus        37 ~~~~Y~iLgv~~~a~~~eIk~-----a~~~HPDk~~~-------~~~f~~i~~Ay~vL~dp~~R~~Y   91 (131)
                      ..+.|++|||...++.++||+     ++.+|||++.+       ++.|+.|++||++|+||.+|..|
T Consensus        32 ~~~~y~~Lgl~~~~t~~eIk~aYr~l~~~~HPDk~~~~~~~~~a~~~f~~I~~Ay~~L~d~~~R~~Y   98 (98)
T d1nz6a_          32 GETKWKPVGMADLVTPEQVKKVYRKAVLVVHPDKATGQPYEQYAKMIFMELNDAWSEFENQGQKPLY   98 (98)
T ss_dssp             TCCSCCCCCGGGCCSHHHHHHHHHHHHHHSCHHHHTTSTTHHHHHHHHHHHHHHHHHHHTTTCCCCC
T ss_pred             cccCCeecCCCccCCHHHHHHHHHHHHHHhccccCCChHHHHHHHHHHHHHHHHHHHHCCHHHHhcC
Confidence            346799999999999999999     99999998763       35899999999999999999876