Citrus Sinensis ID: 038522

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590
Protein Sequence
MNIVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLLEPC
Secondary Structure (PSIPRED)
ccHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHcccccccEEEHHHHHHHHHHcccccHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHcccccHHHHHHHHHHHcHHcccccccccHHHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccEEEEccEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccEEEEEccEEEEEEccc
Coil and Loop (DISEMBL)
mnivranfktgqLKQALKFSlscpdtlldpsTYMSLLQFCIDKKAERQAHLIHAHIITngyesnlhlSTKVIIFYAKVGDVLSARkafdrmpernvVSWTAMISGYAQNGYDENALLVFSAMLRsgvranqfTYSSALRACARMRWLQGgrmiqgsiqkgrfveNLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLamqgfnddSFWLFRSMMrqgmkpdcftlGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISgfarddnhskEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKsgeiadanrafdemgdknvISWTSLIAGYAKHGYGHEAIELYKKMkhegmvpndvTFLSLLFACshtgltcegWELFTDMINKyrilpraehfSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACsiygntslgelaarnlfdmepeksVNYVVLSNIYTAAGAWDNARKTRKLMEERslrknpgysflqsskknilllepc
Flexible Loop (DISEMBL)
mnivranfktgqlkqALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSArkafdrmpernVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTaagawdnarkTRKLMEerslrknpgysflqsskknilllepc
Low Complexity Region (SEG)
MNIVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLLEPC
Disordered region (IsUnstruct)
*******FKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA**********************************
Disordered Region (DISOPRED)
MNIVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLLEPC
Disordered Region (DISEMBL)
MNIVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLLEPC
Disordered Region (DISPRO)
MNIVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLLEPC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNIVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLLEPC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	590	2.2.26 [Sep-21-2011]
Q9LT48	565	Pentatricopeptide repeat-	yes	no	0.933	0.975	0.511	1e-160
P0C898	689	Putative pentatricopeptid	no	no	0.928	0.795	0.363	1e-103
Q9SN39	871	Pentatricopeptide repeat-	no	no	0.891	0.603	0.359	1e-102
Q9LTV8	694	Pentatricopeptide repeat-	no	no	0.920	0.782	0.356	1e-101
Q9ZUW3	868	Pentatricopeptide repeat-	no	no	0.9	0.611	0.349	2e-98
Q9FLZ9	677	Pentatricopeptide repeat-	no	no	0.927	0.807	0.338	3e-96
Q9LFI1	768	Pentatricopeptide repeat-	no	no	0.983	0.755	0.323	1e-95
Q9SVP7	1064	Pentatricopeptide repeat-	no	no	0.930	0.515	0.345	4e-95
Q9STE1	857	Pentatricopeptide repeat-	no	no	0.977	0.673	0.337	1e-94
Q9SS83	1028	Pentatricopeptide repeat-	no	no	0.938	0.538	0.339	3e-94

>sp|Q9LT48|PP244_ARATH Pentatricopeptide repeat-containing protein At3g20730 OS=Arabidopsis thaliana GN=PCMP-E94 PE=2 SV=1

 Score =  564 bits (1454), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 284/555 (51%), Positives = 381/555 (68%), Gaps = 4/555 (0%)

Query: 27  LLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK 86
           LL PS Y+  L+ C  +  ++Q  LIH + ITNG+ SNL L   +I  Y K GDV  ARK
Sbjct: 10  LLSPSLYLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARK 69

Query: 87  AFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRW 146
            FDR+ +R+VVSWTAMIS +++ GY  +ALL+F  M R  V+ANQFTY S L++C  +  
Sbjct: 70  LFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGC 129

Query: 147 LQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGG 206
           L+ G  I GS++KG    NL V+SALL LYA+CG +E+A + F+ ++ +D+VSWNAMI G
Sbjct: 130 LKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDG 189

Query: 207 LAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESS 266
                  D SF LF+ M+ +G KPDCFT GS+LRAS+    L  +S++H L IKLG   S
Sbjct: 190 YTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIKLGFGRS 249

Query: 267 NKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI 326
           + L  SL++ Y K GS+ +A++L+    K D++SCTALI+GF++ +N + +AFD+FKDMI
Sbjct: 250 SALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMI 309

Query: 327 LKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFK-YQSSYDAAVGNALIDMYAKSGEI 385
             K  +D+V++  ML IC  +AS+ +GRQIH FA K  Q  +D A+GN+LIDMYAKSGEI
Sbjct: 310 RMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEI 369

Query: 386 ADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC 445
            DA  AF+EM +K+V SWTSLIAGY +HG   +AI+LY +M+HE + PNDVTFLSLL AC
Sbjct: 370 EDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSAC 429

Query: 446 SHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMN--IKPTA 503
           SHTG T  GW+++  MINK+ I  R EH SC++D+ AR G LE AY +IR     +  ++
Sbjct: 430 SHTGQTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIRSKEGIVSLSS 489

Query: 504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLM 563
           S W A L AC  +GN  L ++AA  L  MEP K VNY+ L+++Y A GAWDNA  TRKLM
Sbjct: 490 STWGAFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAWDNALNTRKLM 549

Query: 564 EER-SLRKNPGYSFL 577
           +E  S  K PGYS +
Sbjct: 550 KESGSCNKAPGYSLV 564

Arabidopsis thaliana (taxid: 3702)

>sp|P0C898|PP232_ARATH Putative pentatricopeptide repeat-containing protein At3g15130 OS=Arabidopsis thaliana GN=PCMP-H86 PE=3 SV=1

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 201/553 (36%), Positives = 322/553 (58%), Gaps = 5/553 (0%)

Query: 34  MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE 93
           +S+L+ C  K    Q   +H +++ +G   NL  S  +I  Y K  + L A K FD MPE
Sbjct: 10  VSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPE 69

Query: 94  RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMI 153
           RNVVSW+A++SG+  NG  + +L +FS M R G+  N+FT+S+ L+AC  +  L+ G  I
Sbjct: 70  RNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQI 129

Query: 154 QGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFN 213
            G   K  F   + V ++L+D+Y+KCG I +A  +F RI  + ++SWNAMI G    G+ 
Sbjct: 130 HGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYG 189

Query: 214 DDSFWLFRSMMRQGMK--PDCFTLGSILRASVGGIELMKISQIHDLIIKLGLE--SSNKL 269
             +   F  M    +K  PD FTL S+L+A      +    QIH  +++ G    SS  +
Sbjct: 190 SKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATI 249

Query: 270 TGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKK 329
           TGSL+D+Y K G + SA + +  + +  +IS ++LI G+A++     EA  LFK +    
Sbjct: 250 TGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFV-EAMGLFKRLQELN 308

Query: 330 MGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADAN 389
             ID   L  ++ + A+ A L  G+Q+ A A K  S  + +V N+++DMY K G + +A 
Sbjct: 309 SQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAE 368

Query: 390 RAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG 449
           + F EM  K+VISWT +I GY KHG G +++ ++ +M    + P++V +L++L ACSH+G
Sbjct: 369 KCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSG 428

Query: 450 LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAI 509
           +  EG ELF+ ++  + I PR EH++CVVDL  R G+L+ A ++I  M IKP   +W  +
Sbjct: 429 MIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTL 488

Query: 510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR 569
           L  C ++G+  LG+   + L  ++ +   NYV++SN+Y  AG W+     R+L   + L+
Sbjct: 489 LSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKGLK 548

Query: 570 KNPGYSFLQSSKK 582
           K  G S+++  ++
Sbjct: 549 KEAGMSWVEIERE 561

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SN39|PP320_ARATH Pentatricopeptide repeat-containing protein At4g18750, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H45 PE=2 SV=1

 Score =  373 bits (958), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 190/528 (35%), Positives = 309/528 (58%), Gaps = 2/528 (0%)

Query: 52  IHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGY 111
           +H  I+ +G+     +   ++ FY K   V SARK FD M ER+V+SW ++I+GY  NG 
Sbjct: 217 LHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGL 276

Query: 112 DENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSA 171
            E  L VF  ML SG+  +  T  S    CA  R +  GR +     K  F       + 
Sbjct: 277 AEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNT 336

Query: 172 LLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD 231
           LLD+Y+KCG ++ A  +F  +  + VVS+ +MI G A +G   ++  LF  M  +G+ PD
Sbjct: 337 LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPD 396

Query: 232 CFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYR 291
            +T+ ++L        L +  ++H+ I +  L     ++ +L+D+YAK GS++ A  ++ 
Sbjct: 397 VYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNALMDMYAKCGSMQEAELVFS 456

Query: 292 SMLKTDIISCTALISGFARDDNHSKEAFDLFKDMIL-KKMGIDDVILCLMLNICANVASL 350
            M   DIIS   +I G++++  ++ EA  LF  ++  K+   D+  +  +L  CA++++ 
Sbjct: 457 EMRVKDIISWNTIIGGYSKN-CYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAF 515

Query: 351 NLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGY 410
           + GR+IH +  +     D  V N+L+DMYAK G +  A+  FD++  K+++SWT +IAGY
Sbjct: 516 DKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGY 575

Query: 411 AKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR 470
             HG+G EAI L+ +M+  G+  ++++F+SLL+ACSH+GL  EGW  F  M ++ +I P 
Sbjct: 576 GMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIMRHECKIEPT 635

Query: 471 AEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLF 530
            EH++C+VD+ AR G L  AY  I  M I P A++W A+L  C I+ +  L E  A  +F
Sbjct: 636 VEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAEKVAEKVF 695

Query: 531 DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQ 578
           ++EPE +  YV+++NIY  A  W+  ++ RK + +R LRKNPG S+++
Sbjct: 696 ELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIE 743

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LTV8|PP224_ARATH Pentatricopeptide repeat-containing protein At3g12770 OS=Arabidopsis thaliana GN=PCMP-H43 PE=2 SV=1

 Score =  369 bits (946), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 196/550 (35%), Positives = 319/550 (58%), Gaps = 7/550 (1%)

Query: 31  STYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDR 90
           S Y SL+     K   +Q   IHA ++  G + +  L TK+I   +  GD+  AR+ FD 
Sbjct: 22  SFYASLIDSATHKAQLKQ---IHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDD 78

Query: 91  MPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGG 150
           +P   +  W A+I GY++N + ++ALL++S M  + V  + FT+   L+AC+ +  LQ G
Sbjct: 79  LPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMG 138

Query: 151 RMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFE--RIERKDVVSWNAMIGGLA 208
           R +   + +  F  ++FV++ L+ LYAKC  +  A  +FE   +  + +VSW A++   A
Sbjct: 139 RFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYA 198

Query: 209 MQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNK 268
             G   ++  +F  M +  +KPD   L S+L A     +L +   IH  ++K+GLE    
Sbjct: 199 QNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPD 258

Query: 269 LTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILK 328
           L  SL  +YAK G + +A  L+  M   ++I   A+ISG+A++  +++EA D+F +MI K
Sbjct: 259 LLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKN-GYAREAIDMFHEMINK 317

Query: 329 KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADA 388
            +  D + +   ++ CA V SL   R ++ +  +     D  + +ALIDM+AK G +  A
Sbjct: 318 DVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGA 377

Query: 389 NRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT 448
              FD   D++V+ W+++I GY  HG   EAI LY+ M+  G+ PNDVTFL LL AC+H+
Sbjct: 378 RLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHS 437

Query: 449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSA 508
           G+  EGW  F  M + ++I P+ +H++CV+DL  R G L+ AY +I+ M ++P  ++W A
Sbjct: 438 GMVREGWWFFNRMAD-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGA 496

Query: 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568
           +L AC  + +  LGE AA+ LF ++P  + +YV LSN+Y AA  WD   + R  M+E+ L
Sbjct: 497 LLSACKKHRHVELGEYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGL 556

Query: 569 RKNPGYSFLQ 578
            K+ G S+++
Sbjct: 557 NKDVGCSWVE 566

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUW3|PP172_ARATH Pentatricopeptide repeat-containing protein At2g27610 OS=Arabidopsis thaliana GN=PCMP-H60 PE=2 SV=1

 Score =  360 bits (923), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 188/538 (34%), Positives = 313/538 (58%), Gaps = 7/538 (1%)

Query: 52  IHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGY 111
           +H  ++ NG +  + +S  +I  Y K G+V  AR  FD+   ++VV+W +MISGYA NG 
Sbjct: 216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 275

Query: 112 DENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSA 171
           D  AL +F +M  + VR ++ +++S ++ CA ++ L+    +  S+ K  F+ +  +++A
Sbjct: 276 DLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTA 335

Query: 172 LLDLYAKCGWIEDAWILFERIE-RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKP 230
           L+  Y+KC  + DA  LF+ I    +VVSW AMI G       +++  LF  M R+G++P
Sbjct: 336 LMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRP 395

Query: 231 DCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLY 290
           + FT   IL A    + ++  S++H  ++K   E S+ +  +L+D Y K G +  A +++
Sbjct: 396 NEFTYSVILTA----LPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVF 451

Query: 291 RSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANV-AS 349
             +   DI++ +A+++G+A+    ++ A  +F ++    +  ++     +LN+CA   AS
Sbjct: 452 SGIDDKDIVAWSAMLAGYAQT-GETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNAS 510

Query: 350 LNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAG 409
           +  G+Q H FA K +      V +AL+ MYAK G I  A   F    +K+++SW S+I+G
Sbjct: 511 MGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISG 570

Query: 410 YAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP 469
           YA+HG   +A++++K+MK   +  + VTF+ +  AC+H GL  EG + F  M+   +I P
Sbjct: 571 YAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAP 630

Query: 470 RAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNL 529
             EH SC+VDL++R GQLE A  +I  M     +++W  IL AC ++  T LG LAA  +
Sbjct: 631 TKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAEKI 690

Query: 530 FDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLL 587
             M+PE S  YV+LSN+Y  +G W    K RKLM ER+++K PGYS+++   K    L
Sbjct: 691 IAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFL 748

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLZ9|PP405_ARATH Pentatricopeptide repeat-containing protein At5g39350 OS=Arabidopsis thaliana GN=PCMP-E16 PE=2 SV=1

 Score =  353 bits (905), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 188/556 (33%), Positives = 320/556 (57%), Gaps = 9/556 (1%)

Query: 29  DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAF 88
           D  TY  + +   + K+ +   ++H  I+ + +  + ++   ++  Y   G V  AR  F
Sbjct: 116 DGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVF 175

Query: 89  DRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQ 148
           D M  R+V+SW  MISGY +NGY  +AL++F  M+   V  +  T  S L  C  ++ L+
Sbjct: 176 DVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLE 235

Query: 149 GGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLA 208
            GR +   +++ R  + + VK+AL+++Y KCG +++A  +F+R+ER+DV++W  MI G  
Sbjct: 236 MGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYT 295

Query: 209 MQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNK 268
             G  +++  L R M  +G++P+  T+ S++      +++     +H   ++  + S   
Sbjct: 296 EDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQVYSDII 355

Query: 269 LTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILK 328
           +  SLI +YAK   +   ++++    K      +A+I+G  +++  S +A  LFK M  +
Sbjct: 356 IETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVS-DALGLFKRMRRE 414

Query: 329 KMGIDDVILCLMLNICANVASLNLGRQIHAFAFK--YQSSYDAAVGNALIDMYAKSGEIA 386
            +  +   L  +L   A +A L     IH +  K  + SS DAA G  L+ +Y+K G + 
Sbjct: 415 DVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATG--LVHVYSKCGTLE 472

Query: 387 DANRAFDEMGDK----NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLL 442
            A++ F+ + +K    +V+ W +LI+GY  HG GH A++++ +M   G+ PN++TF S L
Sbjct: 473 SAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSAL 532

Query: 443 FACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPT 502
            ACSH+GL  EG  LF  M+  Y+ L R+ H++C+VDL  R G+L+ AYN+I  +  +PT
Sbjct: 533 NACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPT 592

Query: 503 ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL 562
           +++W A+L AC  + N  LGE+AA  LF++EPE + NYV+L+NIY A G W +  K R +
Sbjct: 593 STVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSM 652

Query: 563 MEERSLRKNPGYSFLQ 578
           ME   LRK PG+S ++
Sbjct: 653 MENVGLRKKPGHSTIE 668

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFI1|PP280_ARATH Pentatricopeptide repeat-containing protein At3g53360, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E86 PE=2 SV=1

 Score =  351 bits (900), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 189/585 (32%), Positives = 316/585 (54%), Gaps = 5/585 (0%)

Query: 2   NIVRANFKTGQLKQALKFSLSC--PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITN 59
           +++    + GQ  +A++  L     D + D   + S+++ C           +HA +I  
Sbjct: 138 SVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKL 197

Query: 60  GYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVF 119
              S+L     +I  Y +   +  A + F  +P ++++SW+++I+G++Q G++  AL   
Sbjct: 198 ESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHL 257

Query: 120 SAMLRSGV-RANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAK 178
             ML  GV   N++ + S+L+AC+ +     G  I G   K     N     +L D+YA+
Sbjct: 258 KEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYAR 317

Query: 179 CGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI 238
           CG++  A  +F++IER D  SWN +I GLA  G+ D++  +F  M   G  PD  +L S+
Sbjct: 318 CGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSL 377

Query: 239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKT-D 297
           L A    + L +  QIH  IIK G  +   +  SL+ +Y     +   + L+       D
Sbjct: 378 LCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNAD 437

Query: 298 IISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIH 357
            +S   +++   + +    E   LFK M++ +   D + +  +L  C  ++SL LG Q+H
Sbjct: 438 SVSWNTILTACLQHE-QPVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVH 496

Query: 358 AFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGH 417
            ++ K   + +  + N LIDMYAK G +  A R FD M +++V+SW++LI GYA+ G+G 
Sbjct: 497 CYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGE 556

Query: 418 EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCV 477
           EA+ L+K+MK  G+ PN VTF+ +L ACSH GL  EG +L+  M  ++ I P  EH SCV
Sbjct: 557 EALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCV 616

Query: 478 VDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS 537
           VDL AR G+L  A   I +M ++P   +W  +L AC   GN  L + AA N+  ++P  S
Sbjct: 617 VDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNS 676

Query: 538 VNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKK 582
             +V+L +++ ++G W+NA   R  M++  ++K PG S+++   K
Sbjct: 677 TAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDK 721

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SVP7|PP307_ARATH Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2

 Score =  349 bits (895), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 190/550 (34%), Positives = 291/550 (52%), Gaps = 1/550 (0%)

Query: 29  DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAF 88
           D +T  SL+  C       +   +HA+    G+ SN  +   ++  YAK  D+ +A   F
Sbjct: 388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447

Query: 89  DRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQ 148
                 NVV W  M+  Y       N+  +F  M    +  NQ+TY S L+ C R+  L+
Sbjct: 448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507

Query: 149 GGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLA 208
            G  I   I K  F  N +V S L+D+YAK G ++ AW +  R   KDVVSW  MI G  
Sbjct: 508 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 567

Query: 209 MQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNK 268
              F+D +   FR M+ +G++ D   L + + A  G   L +  QIH      G  S   
Sbjct: 568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627

Query: 269 LTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILK 328
              +L+ +Y++ G I  +Y  +      D I+  AL+SGF +  N ++EA  +F  M  +
Sbjct: 628 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGN-NEEALRVFVRMNRE 686

Query: 329 KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADA 388
            +  ++      +   +  A++  G+Q+HA   K     +  V NALI MYAK G I+DA
Sbjct: 687 GIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSISDA 746

Query: 389 NRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT 448
            + F E+  KN +SW ++I  Y+KHG+G EA++ + +M H  + PN VT + +L ACSH 
Sbjct: 747 EKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACSHI 806

Query: 449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSA 508
           GL  +G   F  M ++Y + P+ EH+ CVVD+  R G L  A   I++M IKP A +W  
Sbjct: 807 GLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVWRT 866

Query: 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568
           +L AC ++ N  +GE AA +L ++EPE S  YV+LSN+Y  +  WD    TR+ M+E+ +
Sbjct: 867 LLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEKGV 926

Query: 569 RKNPGYSFLQ 578
           +K PG S+++
Sbjct: 927 KKEPGQSWIE 936

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STE1|PP333_ARATH Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=3 SV=1

 Score =  347 bits (891), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 197/583 (33%), Positives = 318/583 (54%), Gaps = 6/583 (1%)

Query: 9   KTGQLKQALK-FSLSCPDTL-LDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLH 66
           K G L   +K FS+   D +  +  T+  +L  C  K        +H  ++ +G +    
Sbjct: 216 KCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGS 275

Query: 67  LSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSG 126
           +   ++  Y+K G    A K F  M   + V+W  MISGY Q+G  E +L  F  M+ SG
Sbjct: 276 IKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISSG 335

Query: 127 VRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAW 186
           V  +  T+SS L + ++   L+  + I   I +     ++F+ SAL+D Y KC  +  A 
Sbjct: 336 VLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMAQ 395

Query: 187 ILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGI 246
            +F +    DVV + AMI G    G   DS  +FR +++  + P+  TL SIL   +G +
Sbjct: 396 NIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPV-IGIL 454

Query: 247 ELMKIS-QIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALI 305
             +K+  ++H  IIK G ++   +  ++ID+YAK G +  AY+++  + K DI+S  ++I
Sbjct: 455 LALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSMI 514

Query: 306 SGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQS 365
           +  A+ DN S  A D+F+ M +  +  D V +   L+ CAN+ S + G+ IH F  K+  
Sbjct: 515 TRCAQSDNPSA-AIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHSL 573

Query: 366 SYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKK 425
           + D    + LIDMYAK G +  A   F  M +KN++SW S+IA    HG   +++ L+ +
Sbjct: 574 ASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFHE 633

Query: 426 M-KHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR 484
           M +  G+ P+ +TFL ++ +C H G   EG   F  M   Y I P+ EH++CVVDLF R 
Sbjct: 634 MVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGRA 693

Query: 485 GQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLS 544
           G+L  AY  ++ M   P A +W  +LGAC ++ N  L E+A+  L D++P  S  YV++S
Sbjct: 694 GRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLIS 753

Query: 545 NIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLL 587
           N +  A  W++  K R LM+ER ++K PGYS+++ +K+  L +
Sbjct: 754 NAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFV 796

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS83|PP220_ARATH Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1

 Score =  346 bits (888), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 190/559 (33%), Positives = 307/559 (54%), Gaps = 5/559 (0%)

Query: 28  LDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKA 87
           +D  T+ SLL  C            H+ II      NL +   ++  YAK G +  AR+ 
Sbjct: 426 IDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQI 485

Query: 88  FDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWL 147
           F+RM +R+ V+W  +I  Y Q+  +  A  +F  M   G+ ++    +S L+AC  +  L
Sbjct: 486 FERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGL 545

Query: 148 QGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGL 207
             G+ +     K     +L   S+L+D+Y+KCG I+DA  +F  +    VVS NA+I G 
Sbjct: 546 YQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGY 605

Query: 208 AMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSN 267
           +     +++  LF+ M+ +G+ P   T  +I+ A      L   +Q H  I K G  S  
Sbjct: 606 SQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEG 664

Query: 268 KLTG-SLIDVYAKYGSIRSAYQLYRSMLKT-DIISCTALISGFARDDNHSKEAFDLFKDM 325
           +  G SL+ +Y     +  A  L+  +     I+  T ++SG +++  + +EA   +K+M
Sbjct: 665 EYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFY-EEALKFYKEM 723

Query: 326 ILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEI 385
               +  D      +L +C+ ++SL  GR IH+  F      D    N LIDMYAK G++
Sbjct: 724 RHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDM 783

Query: 386 ADANRAFDEMGDK-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA 444
             +++ FDEM  + NV+SW SLI GYAK+GY  +A++++  M+   ++P+++TFL +L A
Sbjct: 784 KGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTA 843

Query: 445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTAS 504
           CSH G   +G ++F  MI +Y I  R +H +C+VDL  R G L+ A + I   N+KP A 
Sbjct: 844 CSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDAR 903

Query: 505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME 564
           LWS++LGAC I+G+   GE++A  L ++EP+ S  YV+LSNIY + G W+ A   RK+M 
Sbjct: 904 LWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMR 963

Query: 565 ERSLRKNPGYSFLQSSKKN 583
           +R ++K PGYS++   ++ 
Sbjct: 964 DRGVKKVPGYSWIDVEQRT 982

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	590
359494657	1724	PREDICTED: pentatricopeptide repeat-cont	0.977	0.334	0.657	0.0
255544622	597	pentatricopeptide repeat-containing prot	0.977	0.966	0.643	0.0
147801011	711	hypothetical protein VITISV_016375 [Viti	0.947	0.786	0.655	0.0
224096616	551	predicted protein [Populus trichocarpa]	0.867	0.929	0.653	0.0
297830768	564	pentatricopeptide repeat-containing prot	0.933	0.976	0.513	1e-159
75274055	565	RecName: Full=Pentatricopeptide repeat-c	0.933	0.975	0.511	1e-158
15232344	564	pentatricopeptide repeat-containing prot	0.933	0.976	0.511	1e-158
357162206	558	PREDICTED: pentatricopeptide repeat-cont	0.932	0.985	0.492	1e-150
413944103	562	hypothetical protein ZEAMMB73_846363 [Ze	0.923	0.969	0.488	1e-149
242095158	563	hypothetical protein SORBIDRAFT_10g00764	0.923	0.968	0.490	1e-149

>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein At4g13650-like [Vitis vinifera]

 Score =  773 bits (1997), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 380/578 (65%), Positives = 460/578 (79%), Gaps = 1/578 (0%)

Query: 11  GQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTK 70
           G+L +ALK   S P T LDPS Y+ +LQ CIDKKA++Q HLIH H+ITNG+ S+LHL+TK
Sbjct: 12  GRLAEALKLLSSNP-TRLDPSLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTK 70

Query: 71  VIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRAN 130
           +IIFY KVGDV++AR  FD MPER+VVSWTAM+SGY+QNG  E A ++FS M   GV+AN
Sbjct: 71  LIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKAN 130

Query: 131 QFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFE 190
           QFTY SALRAC  +R L  G  +QG IQKGRFVENLFVKSAL+D ++KCG +EDA  LF 
Sbjct: 131 QFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFG 190

Query: 191 RIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMK 250
            +  +DVVSWNAMIGG A+QGF DDSF +FRSM+R G+ PDC+TLGS+LRAS  G  L+ 
Sbjct: 191 TMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLII 250

Query: 251 ISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFAR 310
            +QIH +I +LG  S + +TG LI+ YAK GS+RSA  L + MLK D+ S TALI+G+A 
Sbjct: 251 ANQIHGIITQLGYGSYDIVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAH 310

Query: 311 DDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAA 370
           +  +S +A DLFK+M    +G+DDVILC MLNICAN+AS  LG QIHAFA KYQ SYD A
Sbjct: 311 EGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVA 370

Query: 371 VGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEG 430
           +GNALIDMYAKSGEI DA RAFDEM +KNVISWTSLI+GYAKHGYGH A+ LYKKM+ +G
Sbjct: 371 MGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKG 430

Query: 431 MVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESA 490
             PNDVTFLSLLFACSHTGLT EG E F +M+NKY I PRAEH+SC+VDLFAR+G LE A
Sbjct: 431 FKPNDVTFLSLLFACSHTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEA 490

Query: 491 YNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA 550
           YN++ +++IK  ASLW AILGA SIYG  SLG+ AA NLF+M+PE SVNYVVL++IY+AA
Sbjct: 491 YNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAA 550

Query: 551 GAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLLE 588
           G WD+A K RKLMEERS +KN GYSF Q++KK+I LL+
Sbjct: 551 GLWDDAWKIRKLMEERSTKKNAGYSFFQATKKSIPLLQ 588

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  770 bits (1987), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/578 (64%), Positives = 452/578 (78%), Gaps = 1/578 (0%)

Query: 13  LKQALKFSLSCPD-TLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKV 71
           LKQ    S   P+ T L  S YM +LQ CI+ +  +Q  LIH+HII NG++SNLHLSTK+
Sbjct: 19  LKQRFHHSPCEPELTHLSSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKL 78

Query: 72  IIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQ 131
           IIFY K G+ ++ARK FDRMPERNVVSWTA ISGYA+NG+ ++ALLVFS M R+GVRANQ
Sbjct: 79  IIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQ 138

Query: 132 FTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFER 191
           FTY S LRAC  +R L+ G  I G IQK RF+ NLFV+SAL+DL++KCG +EDA  LFE 
Sbjct: 139 FTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNMEDARYLFET 198

Query: 192 IERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKI 251
           +  +DVVSWNA+IGG A Q FNDDSF +F SMM +G+ PDCFTLGS+L+AS     L+K+
Sbjct: 199 MSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKV 258

Query: 252 SQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARD 311
            QIH +II+LG  S   L GSLID YAK   ++SA  LY+SMLK D+IS TA+++G+AR 
Sbjct: 259 CQIHGIIIQLGFGSHIDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARK 318

Query: 312 DNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAV 371
            ++S+EA DLFKDM    M IDDV  C MLN+CA++ASL++GRQIHA A KY+ SYD A 
Sbjct: 319 CSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHALAIKYKPSYDVAT 378

Query: 372 GNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGM 431
           GNAL+DMYAKSGEI DA RAF EM +KNVISWTSLI GY KHGYGHEAI LYKKM++EG+
Sbjct: 379 GNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGL 438

Query: 432 VPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAY 491
            PND+TFLSLLFACSH+GLT EGWE F +MI KY ILPRAEH+SC++DLFAR GQLE AY
Sbjct: 439 KPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAY 498

Query: 492 NMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG 551
           NMI +MNIKP +SLW AILGACSIYG+ SLGE+AA +L  M+PE S NYVVL+ IY A+G
Sbjct: 499 NMICKMNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAASG 558

Query: 552 AWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLLEP 589
           +WD A + R LME RSL+K PGYS +QS+ KN+  L+P
Sbjct: 559 SWDKACRMRNLMEYRSLKKIPGYSIIQSTNKNMRRLQP 596

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]

 Score =  751 bits (1940), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 368/561 (65%), Positives = 446/561 (79%), Gaps = 2/561 (0%)

Query: 28  LDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKA 87
           L+   Y  +L  CIDKKA++Q HLIH H+ITNG+ S+LHL+TK+IIFY KVGDV++AR  
Sbjct: 151 LESKYYEGIL--CIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNV 208

Query: 88  FDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWL 147
           FD MPER+VVSWTAM+SGY+QNG  E A ++FS M   GV+ANQFTY SALRAC  +R L
Sbjct: 209 FDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCL 268

Query: 148 QGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGL 207
             G  +QG IQKGRFVENLFVKSAL+D ++KCG +EDA  LF  +  +DVVSWNAMIGG 
Sbjct: 269 DMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGY 328

Query: 208 AMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSN 267
           A+QGF DDSF +FRSM+R G+ PDC+TLGS+LRAS  G  L+  +QIH +I +LG  S +
Sbjct: 329 AVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYD 388

Query: 268 KLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMIL 327
            +TG LI+ YAK GS+RSA  L + MLK D+ S TALI+G+A +  +S +A DLFK+M  
Sbjct: 389 IVTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQ 448

Query: 328 KKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIAD 387
             +G+DDVILC MLNICAN+AS  LG QIHAFA KYQ SYD A+GNALIDMYAKSGEI D
Sbjct: 449 MNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSYDVAMGNALIDMYAKSGEIED 508

Query: 388 ANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH 447
           A RAFDEM +KNVISWTSLI+GYAKHGYGH A+ LYKKM+ +G  PNDVTFLSLLFACSH
Sbjct: 509 AKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSH 568

Query: 448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWS 507
           TGLT EG E F +M+NKY I PRAEH+SC+VDLFAR+G LE AYN++ +++IK  ASLW 
Sbjct: 569 TGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWG 628

Query: 508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567
           AILGA SIYG  SLG+ AA NLF+M+PE SVNYVVL++IY+AAG WD+A K RKLMEERS
Sbjct: 629 AILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERS 688

Query: 568 LRKNPGYSFLQSSKKNILLLE 588
            +KN GYSF Q++KK+I LL+
Sbjct: 689 TKKNAGYSFFQATKKSIPLLQ 709

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa] gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]

 Score =  749 bits (1933), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 357/546 (65%), Positives = 437/546 (80%)

Query: 34  MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE 93
           M  LQ CI+ KA++  HLIH  I+TNG+ SN+HLSTK+IIFY+K+GD +SARK FDRMPE
Sbjct: 1   MKSLQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPE 60

Query: 94  RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMI 153
           R VVSW+A ISGY+QNG  ++ALLVF  MLR+G +ANQFTY S LRAC  +R LQ G  I
Sbjct: 61  RTVVSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQI 120

Query: 154 QGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFN 213
           QG ++K RF  NL V+SALLDL++KCG +EDA  LF  +E +DVVSWNA+IG  A+QGF+
Sbjct: 121 QGCLEKSRFASNLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFS 180

Query: 214 DDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSL 273
            DSF +FRSMM++GM PD FT GS+L+AS    +++++ QIH LII+LG  S   L+GSL
Sbjct: 181 GDSFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYGSHISLSGSL 240

Query: 274 IDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGID 333
           ID YAK  S+ SA+ LY+SM   D+ISCTAL++G+ARD N+S +A DLFK++    M ID
Sbjct: 241 IDAYAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKID 300

Query: 334 DVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFD 393
           DVILC M NICAN++SL++GRQIHA A K + +YD A+GNALIDMYAKSGEI DANRAF+
Sbjct: 301 DVILCSMFNICANISSLSVGRQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAFN 360

Query: 394 EMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCE 453
           EM +KNVISWTSLI GY  HG+GHEAI L+KKM++EG+ PND+TFLSLLFAC+H GLT E
Sbjct: 361 EMEEKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTGE 420

Query: 454 GWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGAC 513
           GWE F +MI+KY ILPRAEHFSC+VDLFAR G LE AYN+I +MNIKP ASLW AILGAC
Sbjct: 421 GWECFNNMISKYNILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNASLWGAILGAC 480

Query: 514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPG 573
            IYGN  L E AA +LF M+PE SVNYVVL++IY AAG+WDNA K RKLMEER+L+K PG
Sbjct: 481 YIYGNMPLAEEAAIHLFKMDPENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLKKAPG 540

Query: 574 YSFLQS 579
           YSF+ S
Sbjct: 541 YSFIPS 546

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297830768|ref|XP_002883266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297329106|gb|EFH59525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  568 bits (1465), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 285/555 (51%), Positives = 384/555 (69%), Gaps = 4/555 (0%)

Query: 27  LLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK 86
           LL    Y+  L+ C  +  ++Q  LIH + +TNG+ SNL L+  +I  Y K GDV  ARK
Sbjct: 9   LLSHPLYLKALKLCSYQNVKKQLLLIHGNSVTNGFGSNLQLNDMLIDLYLKQGDVKHARK 68

Query: 87  AFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRW 146
            FDR+P+R+VVSWTAMIS +++ GY  +ALL+F  M R  VRANQFTY S L++C  +  
Sbjct: 69  LFDRIPKRDVVSWTAMISRFSRCGYHRDALLLFKQMHRQDVRANQFTYGSVLKSCKDLGC 128

Query: 147 LQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGG 206
           L+ G  IQG ++KG+   NL V+SALL LYA+CG +EDA + F+ ++ +D+VSWN+MI G
Sbjct: 129 LKEGMQIQGCLEKGKCAGNLIVRSALLSLYARCGKMEDARLQFDSMKERDLVSWNSMIDG 188

Query: 207 LAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESS 266
                  D SF LF+ M  +G KPDCFT GS+LRAS+    L  + Q+H L IKLG   S
Sbjct: 189 YTTNACVDTSFSLFQLMFAEGKKPDCFTFGSLLRASIVVKCLEPVGQLHGLAIKLGFGRS 248

Query: 267 NKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI 326
           + L  SL+D Y K GSI +A++L+    K D+ISCTALI+GFA+ +  + +AFD+F +MI
Sbjct: 249 SALIRSLVDAYVKCGSIANAWKLHEDTTKRDLISCTALITGFAQQNICTSDAFDIFNEMI 308

Query: 327 LKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFK-YQSSYDAAVGNALIDMYAKSGEI 385
           L K  +D+V++  ML IC  +AS+ +GRQIH FA K  Q  +D A+GN+LIDMYAKSG+I
Sbjct: 309 LMKTKMDEVVVSSMLKICTTIASVTVGRQIHGFALKSSQIRFDIALGNSLIDMYAKSGDI 368

Query: 386 ADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC 445
            DA  AF+EM +K+V SWTSLIAGY +HG   +AI+LY +M+HEG+ PNDVTFLSLL AC
Sbjct: 369 EDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHEGIKPNDVTFLSLLSAC 428

Query: 446 SHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMN--IKPTA 503
           SHTG T  GW++F  MINK+ I  R EHFSC++D+ AR G LE AY +IR  +  I  ++
Sbjct: 429 SHTGQTELGWKIFNKMINKHGIKAREEHFSCIIDMLARSGYLEEAYELIRSKDGIISLSS 488

Query: 504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLM 563
           S W A L AC  +GN  L ++AA  L  +EP+K VNY+ L++++ A GAWD+A KTR+LM
Sbjct: 489 STWGAFLDACRRHGNVQLSKVAASQLLSVEPKKPVNYINLASVHAANGAWDSALKTRQLM 548

Query: 564 EER-SLRKNPGYSFL 577
           +E  S  K PGYS +
Sbjct: 549 KESGSCNKTPGYSLV 563

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|75274055|sp|Q9LT48.1|PP244_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g20730 gi|9294399|dbj|BAB02480.1| unnamed protein product [Arabidopsis thaliana] gi|51971823|dbj|BAD44576.1| unknown protein [Arabidopsis thaliana]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/555 (51%), Positives = 381/555 (68%), Gaps = 4/555 (0%)

Query: 27  LLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK 86
           LL PS Y+  L+ C  +  ++Q  LIH + ITNG+ SNL L   +I  Y K GDV  ARK
Sbjct: 10  LLSPSLYLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARK 69

Query: 87  AFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRW 146
            FDR+ +R+VVSWTAMIS +++ GY  +ALL+F  M R  V+ANQFTY S L++C  +  
Sbjct: 70  LFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGC 129

Query: 147 LQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGG 206
           L+ G  I GS++KG    NL V+SALL LYA+CG +E+A + F+ ++ +D+VSWNAMI G
Sbjct: 130 LKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDG 189

Query: 207 LAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESS 266
                  D SF LF+ M+ +G KPDCFT GS+LRAS+    L  +S++H L IKLG   S
Sbjct: 190 YTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIKLGFGRS 249

Query: 267 NKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI 326
           + L  SL++ Y K GS+ +A++L+    K D++SCTALI+GF++ +N + +AFD+FKDMI
Sbjct: 250 SALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMI 309

Query: 327 LKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFK-YQSSYDAAVGNALIDMYAKSGEI 385
             K  +D+V++  ML IC  +AS+ +GRQIH FA K  Q  +D A+GN+LIDMYAKSGEI
Sbjct: 310 RMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEI 369

Query: 386 ADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC 445
            DA  AF+EM +K+V SWTSLIAGY +HG   +AI+LY +M+HE + PNDVTFLSLL AC
Sbjct: 370 EDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSAC 429

Query: 446 SHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMN--IKPTA 503
           SHTG T  GW+++  MINK+ I  R EH SC++D+ AR G LE AY +IR     +  ++
Sbjct: 430 SHTGQTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIRSKEGIVSLSS 489

Query: 504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLM 563
           S W A L AC  +GN  L ++AA  L  MEP K VNY+ L+++Y A GAWDNA  TRKLM
Sbjct: 490 STWGAFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAWDNALNTRKLM 549

Query: 564 EER-SLRKNPGYSFL 577
           +E  S  K PGYS +
Sbjct: 550 KESGSCNKAPGYSLV 564

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232344|ref|NP_188709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|38564272|gb|AAR23715.1| At3g20730 [Arabidopsis thaliana] gi|332642896|gb|AEE76417.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  564 bits (1454), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 284/555 (51%), Positives = 381/555 (68%), Gaps = 4/555 (0%)

Query: 27  LLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK 86
           LL PS Y+  L+ C  +  ++Q  LIH + ITNG+ SNL L   +I  Y K GDV  ARK
Sbjct: 9   LLSPSLYLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGDVKHARK 68

Query: 87  AFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRW 146
            FDR+ +R+VVSWTAMIS +++ GY  +ALL+F  M R  V+ANQFTY S L++C  +  
Sbjct: 69  LFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKSCKDLGC 128

Query: 147 LQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGG 206
           L+ G  I GS++KG    NL V+SALL LYA+CG +E+A + F+ ++ +D+VSWNAMI G
Sbjct: 129 LKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVSWNAMIDG 188

Query: 207 LAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESS 266
                  D SF LF+ M+ +G KPDCFT GS+LRAS+    L  +S++H L IKLG   S
Sbjct: 189 YTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAIKLGFGRS 248

Query: 267 NKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI 326
           + L  SL++ Y K GS+ +A++L+    K D++SCTALI+GF++ +N + +AFD+FKDMI
Sbjct: 249 SALIRSLVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDAFDIFKDMI 308

Query: 327 LKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFK-YQSSYDAAVGNALIDMYAKSGEI 385
             K  +D+V++  ML IC  +AS+ +GRQIH FA K  Q  +D A+GN+LIDMYAKSGEI
Sbjct: 309 RMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEI 368

Query: 386 ADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC 445
            DA  AF+EM +K+V SWTSLIAGY +HG   +AI+LY +M+HE + PNDVTFLSLL AC
Sbjct: 369 EDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSAC 428

Query: 446 SHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMN--IKPTA 503
           SHTG T  GW+++  MINK+ I  R EH SC++D+ AR G LE AY +IR     +  ++
Sbjct: 429 SHTGQTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIRSKEGIVSLSS 488

Query: 504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLM 563
           S W A L AC  +GN  L ++AA  L  MEP K VNY+ L+++Y A GAWDNA  TRKLM
Sbjct: 489 STWGAFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAWDNALNTRKLM 548

Query: 564 EER-SLRKNPGYSFL 577
           +E  S  K PGYS +
Sbjct: 549 KESGSCNKAPGYSLV 563

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357162206|ref|XP_003579338.1| PREDICTED: pentatricopeptide repeat-containing protein At3g20730-like [Brachypodium distachyon]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 272/552 (49%), Positives = 373/552 (67%), Gaps = 2/552 (0%)

Query: 26  TLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSAR 85
           T  DP+ Y SLLQ C+     R+   +H  II +    +LH+STK++IFYAK GDV +AR
Sbjct: 9   TSADPAFYYSLLQSCM--SCFRRGRSVHHQIIASAAPPDLHMSTKLVIFYAKHGDVAAAR 66

Query: 86  KAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMR 145
           K FD MP R+VVSWTAM+SGY++NG    AL +F+ ML SGVR NQFTY S   ACA   
Sbjct: 67  KVFDGMPHRSVVSWTAMVSGYSRNGQTREALDLFTLMLASGVRPNQFTYGSVASACAGAG 126

Query: 146 WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIG 205
            ++ G  +   + KGRFV ++FV+SAL+D++ +CG + DA  LF  +ERKDVV+WNA++ 
Sbjct: 127 CVRSGEQVHACVAKGRFVGDVFVQSALMDMHLRCGSVVDAMQLFAEMERKDVVAWNALLR 186

Query: 206 GLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLES 265
           GL  +    D+  L  SM+R  M PD FT GS L+A      L  +  IH  IIKLG   
Sbjct: 187 GLVERAQYGDALGLLPSMLRGAMLPDHFTFGSALKACGAVSVLANVELIHTCIIKLGYWG 246

Query: 266 SNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDM 325
              + GS+ID YAK   + SA  +Y S+ + D++S TALISG++ D NHS++A +LF  +
Sbjct: 247 EKVVIGSIIDAYAKCRGLSSARLIYDSICEPDLVSSTALISGYSMDRNHSEDAMELFCKI 306

Query: 326 ILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEI 385
             K + ID V+L  +L +CANVASL  G QIHA+  K Q   D A+ NA++DMYAK+GE 
Sbjct: 307 HRKGLRIDGVLLSSLLGLCANVASLRFGTQIHAYMCKRQPMTDVALDNAVVDMYAKAGEF 366

Query: 386 ADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC 445
           ADA RAFDEM  +NV+SWTSLI    K+G+G +A+ L+ +M  +G+ PNDVTFLSLL AC
Sbjct: 367 ADARRAFDEMPYRNVVSWTSLITACGKNGFGEDAVSLFDRMVEDGVKPNDVTFLSLLSAC 426

Query: 446 SHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASL 505
            H+GLT +G E FT M++KY I PRAEH+S  +DL AR GQL+ A+ +++ ++I+P +S+
Sbjct: 427 GHSGLTSKGMEYFTSMMSKYGIDPRAEHYSSAIDLLARGGQLKDAWKLVQNIDIEPNSSM 486

Query: 506 WSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE 565
           + A+LGAC  +G+  LGE AA+NLF + PE SV+Y VL+N+Y  +  W++A++TRKLM E
Sbjct: 487 FGAMLGACKTHGSMPLGETAAKNLFTIAPESSVHYAVLANMYAESSLWEDAQRTRKLMAE 546

Query: 566 RSLRKNPGYSFL 577
            S  K  G S +
Sbjct: 547 TSGGKVAGCSVI 558

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 267/547 (48%), Positives = 368/547 (67%), Gaps = 2/547 (0%)

Query: 33  YMSLLQFCIDKKAERQAHLIH--AHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDR 90
           Y SLLQ  +   A RQ   +H  A I ++    +LHL+TK++IFY+  GDV +AR+ FD 
Sbjct: 14  YSSLLQSSMGANAFRQGKSVHHRAIITSSASPPDLHLNTKLVIFYSHFGDVAAARRVFDG 73

Query: 91  MPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGG 150
           MP R+VVSWTAM+SGYA+N   + AL +F+ MLRSG R NQFT+ SA+RAC   R  + G
Sbjct: 74  MPHRSVVSWTAMVSGYAKNSRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSG 133

Query: 151 RMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQ 210
             I     KGRF  ++FV+SAL+D++ +CG + DA  LF  +ERKD+VSWN+++ G   +
Sbjct: 134 EQIHACAAKGRFAGDMFVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNSLMRGFVER 193

Query: 211 GFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLT 270
              +D+  LF SM+R GM PD FT GS L+A      L  +  IH  IIKLG    N   
Sbjct: 194 EHCNDALGLFDSMLRDGMLPDHFTFGSALKACGAISVLFNVELIHACIIKLGYWDENVAI 253

Query: 271 GSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKM 330
            SLID YAK  S+ SA  +Y SM + D++S TALISG++ D N+S +A  LF  +  K +
Sbjct: 254 ASLIDSYAKCRSLSSARVIYDSMCEPDLVSSTALISGYSMDRNYSDDAMKLFCKIHRKGL 313

Query: 331 GIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANR 390
            ID ++L  +L +CANVAS+  G QIHA+  K Q   D A+ NAL+DMYAKSGE  D+ R
Sbjct: 314 RIDAILLSSLLGVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVDMYAKSGEFLDSRR 373

Query: 391 AFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGL 450
           AFDEM ++NVISWTSLI   A+HG+G +A+ L+ +M+ +G+ PNDVTFLSLL ACSH+G+
Sbjct: 374 AFDEMPNRNVISWTSLITSCAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSHSGM 433

Query: 451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAIL 510
             +G E FT M++KY I PR +H+S  VDL AR GQLE A+ +++  N +  +S++  +L
Sbjct: 434 MNKGMEYFTSMMSKYGIDPRFKHYSSAVDLLARGGQLEDAWMLVQNTNTECKSSMYGTML 493

Query: 511 GACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK 570
           GAC ++GN  LGE AA+NL  ++PE SVNY VL+N+Y  +  W++A++TRKL+ E S  K
Sbjct: 494 GACKVHGNMPLGETAAKNLLSIDPESSVNYAVLANMYAESHLWEDAQRTRKLLVETSKGK 553

Query: 571 NPGYSFL 577
             G+S +
Sbjct: 554 EAGFSVI 560

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242095158|ref|XP_002438069.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor] gi|241916292|gb|EER89436.1| hypothetical protein SORBIDRAFT_10g007640 [Sorghum bicolor]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 270/550 (49%), Positives = 368/550 (66%), Gaps = 5/550 (0%)

Query: 33  YMSLLQFCIDKKAERQAHLIHAH-IITNGYESN----LHLSTKVIIFYAKVGDVLSARKA 87
           Y SLLQ CI   A RQ   +H   IIT   + +    LHLSTK+++FY+  GDV +AR  
Sbjct: 14  YSSLLQSCIGANAFRQGKSVHHRAIITASSDPSPPDLLHLSTKLVMFYSHFGDVAAARAV 73

Query: 88  FDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWL 147
           FD MP R+VVSWTAM+SGYA+NG    AL +F+ MLRSG R NQFT+ SA RACA  R  
Sbjct: 74  FDGMPHRSVVSWTAMVSGYAKNGRAPEALELFALMLRSGARPNQFTFGSAARACAGGRCA 133

Query: 148 QGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGL 207
           + G  +     KGR   ++FV+SAL+D++ +CG + DA  LF  +ERKD+VSWNA++ G 
Sbjct: 134 RSGEQVHACAAKGRHAGDMFVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNALMRGF 193

Query: 208 AMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSN 267
             +G   D+  LF SM+R GM PD FT GS L+A      +  +  IH  IIKLG     
Sbjct: 194 VERGHYSDALGLFASMLRDGMLPDHFTFGSALKACGAISVIFNVELIHTCIIKLGYWDEK 253

Query: 268 KLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMIL 327
             T SLID YAK  S+ SA  +Y S+ + D++S TALIS  + D N+S++A  LF  +  
Sbjct: 254 VATASLIDSYAKCRSLSSARVIYDSICEPDLVSSTALISDHSMDRNYSEDAMKLFCKIHR 313

Query: 328 KKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIAD 387
           + + ID ++L  +L +CANVAS+  G QIHA+  K Q   D A+ NAL+DMYAKSGE  D
Sbjct: 314 EGLRIDGILLSALLGVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVDMYAKSGEYLD 373

Query: 388 ANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH 447
           + RAFDEM  +NVISWTSLI   A+HG+G +A+ L+ +M+ +G+ PNDVTFLSLL ACSH
Sbjct: 374 SRRAFDEMPSRNVISWTSLITACAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSH 433

Query: 448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWS 507
           +G+  +G E FT M+NKY I PRA+H+S  +DL AR GQLE A+ ++++ N +  +S++ 
Sbjct: 434 SGMMNKGMEYFTSMMNKYGIDPRAKHYSSAIDLLARGGQLEDAWMLLQKTNTECKSSMYG 493

Query: 508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567
           A+LGAC ++GN  LGE AA NLF ++P+ SVNY VL+N+Y  +  W++A++TRKL+ E S
Sbjct: 494 AMLGACKVHGNIPLGETAANNLFSIDPKSSVNYAVLANMYAESCLWEDAQRTRKLLAETS 553

Query: 568 LRKNPGYSFL 577
             K  G+S +
Sbjct: 554 KGKEVGFSVI 563

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	590
TAIR|locus:2083631	689	AT3G15130 "AT3G15130" [Arabido	0.925	0.792	0.369	3.7e-96
TAIR|locus:2124137	871	DOT4 "DEFECTIVELY ORGANIZED TR	0.922	0.624	0.357	4.7e-96
TAIR|locus:2038603	868	AT2G27610 "AT2G27610" [Arabido	0.896	0.609	0.355	5e-92
TAIR|locus:2175653	677	AT5G39350 "AT5G39350" [Arabido	0.932	0.812	0.339	3.5e-91
TAIR|locus:2083961	768	AT3G53360 "AT3G53360" [Arabido	0.983	0.755	0.323	1.2e-90
TAIR|locus:2141171	857	AT4G21300 [Arabidopsis thalian	0.976	0.672	0.339	4e-90
TAIR|locus:2095289	1028	AT3G09040 "AT3G09040" [Arabido	0.937	0.537	0.340	5.9e-89
TAIR|locus:2060640	738	OTP81 "ORGANELLE TRANSCRIPT PR	0.532	0.425	0.370	1.3e-88
TAIR|locus:2119440	1064	AT4G13650 [Arabidopsis thalian	0.927	0.514	0.349	2e-88
TAIR|locus:2082886	850	EMB2261 "embryo defective 2261	0.879	0.610	0.355	2e-88

TAIR|locus:2083631 AT3G15130 "AT3G15130" [Arabidopsis thaliana (taxid:3702)]

 Score = 956 (341.6 bits), Expect = 3.7e-96, P = 3.7e-96
 Identities = 205/555 (36%), Positives = 325/555 (58%)

Query:    34 MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE 93
             +S+L+ C  K    Q   +H +++ +G   NL  S  +I  Y K  + L A K FD MPE
Sbjct:    10 VSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAYKVFDSMPE 69

Query:    94 RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMI 153
             RNVVSW+A++SG+  NG  + +L +FS M R G+  N+FT+S+ L+AC  +  L+ G  I
Sbjct:    70 RNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQI 129

Query:   154 QGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFN 213
              G   K  F   + V ++L+D+Y+KCG I +A  +F RI  + ++SWNAMI G    G+ 
Sbjct:   130 HGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYG 189

Query:   214 DDSFWLFRSMMRQGMK--PDCFTLGSILRA--SVGGIELMKISQIHDLIIKLGLE--SSN 267
               +   F  M    +K  PD FTL S+L+A  S G I   K  QIH  +++ G    SS 
Sbjct:   190 SKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGK--QIHGFLVRSGFHCPSSA 247

Query:   268 KLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMIL 327
              +TGSL+D+Y K G + SA + +  + +  +IS ++LI G+A++     EA  LFK +  
Sbjct:   248 TITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFV-EAMGLFKRLQE 306

Query:   328 KKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIAD 387
                 ID   L  ++ + A+ A L  G+Q+ A A K  S  + +V N+++DMY K G + +
Sbjct:   307 LNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDE 366

Query:   388 ANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH 447
             A + F EM  K+VISWT +I GY KHG G +++ ++ +M    + P++V +L++L ACSH
Sbjct:   367 AEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSH 426

Query:   448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWS 507
             +G+  EG ELF+ ++  + I PR EH++CVVDL  R G+L+ A ++I  M IKP   +W 
Sbjct:   427 SGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQ 486

Query:   508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS 567
              +L  C ++G+  LG+   + L  ++ +   NYV++SN+Y  AG W+     R+L   + 
Sbjct:   487 TLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNARELGNIKG 546

Query:   568 LRKNPGYSFLQSSKK 582
             L+K  G S+++  ++
Sbjct:   547 LKKEAGMSWVEIERE 561

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124137 DOT4 "DEFECTIVELY ORGANIZED TRIBUTARIES 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 955 (341.2 bits), Expect = 4.7e-96, P = 4.7e-96
 Identities = 199/556 (35%), Positives = 323/556 (58%)

Query:    40 CIDKKAE--RQAH---LIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPER 94
             C+ K     R  H    +H  I+ +G+     +   ++ FY K   V SARK FD M ER
Sbjct:   200 CVSKSFSSLRSVHGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTER 259

Query:    95 NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQ 154
             +V+SW ++I+GY  NG  E  L VF  ML SG+  +  T  S    CA  R +  GR + 
Sbjct:   260 DVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVH 319

Query:   155 GSIQKGRFV-ENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFN 213
                 K  F  E+ F  + LLD+Y+KCG ++ A  +F  +  + VVS+ +MI G A +G  
Sbjct:   320 SIGVKACFSREDRFCNT-LLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLA 378

Query:   214 DDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSL 273
              ++  LF  M  +G+ PD +T+ ++L        L +  ++H+ I +  L     ++ +L
Sbjct:   379 GEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFDIFVSNAL 438

Query:   274 IDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMIL--KKMG 331
             +D+YAK GS++ A  ++  M   DIIS   +I G++++  ++ EA  LF +++L  K+  
Sbjct:   439 MDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGGYSKNC-YANEALSLF-NLLLEEKRFS 496

Query:   332 IDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRA 391
              D+  +  +L  CA++++ + GR+IH +  +     D  V N+L+DMYAK G +  A+  
Sbjct:   497 PDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHML 556

Query:   392 FDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLT 451
             FD++  K+++SWT +IAGY  HG+G EAI L+ +M+  G+  ++++F+SLL+ACSH+GL 
Sbjct:   557 FDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLV 616

Query:   452 CEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILG 511
              EGW  F  M ++ +I P  EH++C+VD+ AR G L  AY  I  M I P A++W A+L 
Sbjct:   617 DEGWRFFNIMRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLC 676

Query:   512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKN 571
              C I+ +  L E  A  +F++EPE +  YV+++NIY  A  W+  ++ RK + +R LRKN
Sbjct:   677 GCRIHHDVKLAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKN 736

Query:   572 PGYSFLQ-SSKKNILL 586
             PG S+++   + NI +
Sbjct:   737 PGCSWIEIKGRVNIFV 752

GO:0009507 "chloroplast" evidence=ISM

GO:0010087 "phloem or xylem histogenesis" evidence=IMP

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010588 "cotyledon vascular tissue pattern formation" evidence=IMP

GO:0048366 "leaf development" evidence=IMP

TAIR|locus:2038603 AT2G27610 "AT2G27610" [Arabidopsis thaliana (taxid:3702)]

 Score = 917 (327.9 bits), Expect = 5.0e-92, P = 5.0e-92
 Identities = 192/540 (35%), Positives = 315/540 (58%)

Query:    52 IHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGY 111
             +H  ++ NG +  + +S  +I  Y K G+V  AR  FD+   ++VV+W +MISGYA NG 
Sbjct:   216 VHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGL 275

Query:   112 DENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSA 171
             D  AL +F +M  + VR ++ +++S ++ CA ++ L+    +  S+ K  F+ +  +++A
Sbjct:   276 DLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTA 335

Query:   172 LLDLYAKCGWIEDAWILFERIERK-DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKP 230
             L+  Y+KC  + DA  LF+ I    +VVSW AMI G       +++  LF  M R+G++P
Sbjct:   336 LMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRP 395

Query:   231 DCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLY 290
             + FT   IL A    + ++  S++H  ++K   E S+ +  +L+D Y K G +  A +++
Sbjct:   396 NEFTYSVILTA----LPVISPSEVHAQVVKTNYERSSTVGTALLDAYVKLGKVEEAAKVF 451

Query:   291 RSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGI--DDVILCLMLNICANV- 347
               +   DI++ +A+++G+A+    ++ A  +F +  L K GI  ++     +LN+CA   
Sbjct:   452 SGIDDKDIVAWSAMLAGYAQT-GETEAAIKMFGE--LTKGGIKPNEFTFSSILNVCAATN 508

Query:   348 ASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLI 407
             AS+  G+Q H FA K +      V +AL+ MYAK G I  A   F    +K+++SW S+I
Sbjct:   509 ASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMI 568

Query:   408 AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRI 467
             +GYA+HG   +A++++K+MK   +  + VTF+ +  AC+H GL  EG + F  M+   +I
Sbjct:   569 SGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKI 628

Query:   468 LPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAAR 527
              P  EH SC+VDL++R GQLE A  +I  M     +++W  IL AC ++  T LG LAA 
Sbjct:   629 APTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTIWRTILAACRVHKKTELGRLAAE 688

Query:   528 NLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLL 587
              +  M+PE S  YV+LSN+Y  +G W    K RKLM ER+++K PGYS+++   K    L
Sbjct:   689 KIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNERNVKKEPGYSWIEVKNKTYSFL 748

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175653 AT5G39350 "AT5G39350" [Arabidopsis thaliana (taxid:3702)]

 Score = 909 (325.0 bits), Expect = 3.5e-91, P = 3.5e-91
 Identities = 192/565 (33%), Positives = 327/565 (57%)

Query:    29 DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAF 88
             D  TY  + +   + K+ +   ++H  I+ + +  + ++   ++  Y   G V  AR  F
Sbjct:   116 DGYTYPFVAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVF 175

Query:    89 DRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQ 148
             D M  R+V+SW  MISGY +NGY  +AL++F  M+   V  +  T  S L  C  ++ L+
Sbjct:   176 DVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLE 235

Query:   149 GGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLA 208
              GR +   +++ R  + + VK+AL+++Y KCG +++A  +F+R+ER+DV++W  MI G  
Sbjct:   236 MGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYT 295

Query:   209 MQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQ---IHDLIIKLGLES 265
               G  +++  L R M  +G++P+  T+ S++  SV G + +K++    +H   ++  + S
Sbjct:   296 EDGDVENALELCRLMQFEGVRPNAVTIASLV--SVCG-DALKVNDGKCLHGWAVRQQVYS 352

Query:   266 SNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDM 325
                +  SLI +YAK   +   ++++    K      +A+I+G  +++  S +A  LFK M
Sbjct:   353 DIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVS-DALGLFKRM 411

Query:   326 ILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFK--YQSSYDAAVGNALIDMYAKSG 383
               + +  +   L  +L   A +A L     IH +  K  + SS DAA G  L+ +Y+K G
Sbjct:   412 RREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGFMSSLDAATG--LVHVYSKCG 469

Query:   384 EIADANRAFDEMGDKN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFL 439
              +  A++ F+ + +K+    V+ W +LI+GY  HG GH A++++ +M   G+ PN++TF 
Sbjct:   470 TLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFT 529

Query:   440 SLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNI 499
             S L ACSH+GL  EG  LF  M+  Y+ L R+ H++C+VDL  R G+L+ AYN+I  +  
Sbjct:   530 SALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPF 589

Query:   500 KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKT 559
             +PT+++W A+L AC  + N  LGE+AA  LF++EPE + NYV+L+NIY A G W +  K 
Sbjct:   590 EPTSTVWGALLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKV 649

Query:   560 RKLMEERSLRKNPGYSFLQSSKKNI 584
             R +ME   LRK PG+S ++    ++
Sbjct:   650 RSMMENVGLRKKPGHSTIEIRSNSV 674

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083961 AT3G53360 "AT3G53360" [Arabidopsis thaliana (taxid:3702)]

 Score = 904 (323.3 bits), Expect = 1.2e-90, P = 1.2e-90
 Identities = 189/585 (32%), Positives = 316/585 (54%)

Query:     2 NIVRANFKTGQLKQALKFSLSC--PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITN 59
             +++    + GQ  +A++  L     D + D   + S+++ C           +HA +I  
Sbjct:   138 SVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASSSDVGLGKQLHAQVIKL 197

Query:    60 GYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVF 119
                S+L     +I  Y +   +  A + F  +P ++++SW+++I+G++Q G++  AL   
Sbjct:   198 ESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSIIAGFSQLGFEFEALSHL 257

Query:   120 SAMLRSGV-RANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAK 178
               ML  GV   N++ + S+L+AC+ +     G  I G   K     N     +L D+YA+
Sbjct:   258 KEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKSELAGNAIAGCSLCDMYAR 317

Query:   179 CGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI 238
             CG++  A  +F++IER D  SWN +I GLA  G+ D++  +F  M   G  PD  +L S+
Sbjct:   318 CGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFSQMRSSGFIPDAISLRSL 377

Query:   239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKT-D 297
             L A    + L +  QIH  IIK G  +   +  SL+ +Y     +   + L+       D
Sbjct:   378 LCAQTKPMALSQGMQIHSYIIKWGFLADLTVCNSLLTMYTFCSDLYCCFNLFEDFRNNAD 437

Query:   298 IISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIH 357
              +S   +++   + +    E   LFK M++ +   D + +  +L  C  ++SL LG Q+H
Sbjct:   438 SVSWNTILTACLQHEQ-PVEMLRLFKLMLVSECEPDHITMGNLLRGCVEISSLKLGSQVH 496

Query:   358 AFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGH 417
              ++ K   + +  + N LIDMYAK G +  A R FD M +++V+SW++LI GYA+ G+G 
Sbjct:   497 CYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNRDVVSWSTLIVGYAQSGFGE 556

Query:   418 EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCV 477
             EA+ L+K+MK  G+ PN VTF+ +L ACSH GL  EG +L+  M  ++ I P  EH SCV
Sbjct:   557 EALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLYATMQTEHGISPTKEHCSCV 616

Query:   478 VDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS 537
             VDL AR G+L  A   I +M ++P   +W  +L AC   GN  L + AA N+  ++P  S
Sbjct:   617 VDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGNVHLAQKAAENILKIDPFNS 676

Query:   538 VNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKK 582
               +V+L +++ ++G W+NA   R  M++  ++K PG S+++   K
Sbjct:   677 TAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIEIEDK 721

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2141171 AT4G21300 [Arabidopsis thaliana (taxid:3702)]

 Score = 899 (321.5 bits), Expect = 4.0e-90, P = 4.0e-90
 Identities = 198/584 (33%), Positives = 319/584 (54%)

Query:     9 KTGQLKQALK-FSLSCPDTLLDPS--TYMSLLQFCIDKKAERQAHLIHAHIITNGYESNL 65
             K G L   +K FS+   D +  P+  T+  +L  C  K        +H  ++ +G +   
Sbjct:   216 KCGALDSVIKGFSVMRMDQI-SPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEG 274

Query:    66 HLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRS 125
              +   ++  Y+K G    A K F  M   + V+W  MISGY Q+G  E +L  F  M+ S
Sbjct:   275 SIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISS 334

Query:   126 GVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDA 185
             GV  +  T+SS L + ++   L+  + I   I +     ++F+ SAL+D Y KC  +  A
Sbjct:   335 GVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVSMA 394

Query:   186 WILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGG 245
               +F +    DVV + AMI G    G   DS  +FR +++  + P+  TL SIL   +G 
Sbjct:   395 QNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPV-IGI 453

Query:   246 IELMKIS-QIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTAL 304
             +  +K+  ++H  IIK G ++   +  ++ID+YAK G +  AY+++  + K DI+S  ++
Sbjct:   454 LLALKLGRELHGFIIKKGFDNRCNIGCAVIDMYAKCGRMNLAYEIFERLSKRDIVSWNSM 513

Query:   305 ISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQ 364
             I+  A+ DN S  A D+F+ M +  +  D V +   L+ CAN+ S + G+ IH F  K+ 
Sbjct:   514 ITRCAQSDNPSA-AIDIFRQMGVSGICYDCVSISAALSACANLPSESFGKAIHGFMIKHS 572

Query:   365 SSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYK 424
              + D    + LIDMYAK G +  A   F  M +KN++SW S+IA    HG   +++ L+ 
Sbjct:   573 LASDVYSESTLIDMYAKCGNLKAAMNVFKTMKEKNIVSWNSIIAACGNHGKLKDSLCLFH 632

Query:   425 KM-KHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR 483
             +M +  G+ P+ +TFL ++ +C H G   EG   F  M   Y I P+ EH++CVVDLF R
Sbjct:   633 EMVEKSGIRPDQITFLEIISSCCHVGDVDEGVRFFRSMTEDYGIQPQQEHYACVVDLFGR 692

Query:   484 RGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVL 543
              G+L  AY  ++ M   P A +W  +LGAC ++ N  L E+A+  L D++P  S  YV++
Sbjct:   693 AGRLTEAYETVKSMPFPPDAGVWGTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLI 752

Query:   544 SNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKKNILLL 587
             SN +  A  W++  K R LM+ER ++K PGYS+++ +K+  L +
Sbjct:   753 SNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFV 796

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2095289 AT3G09040 "AT3G09040" [Arabidopsis thaliana (taxid:3702)]

 Score = 888 (317.7 bits), Expect = 5.9e-89, P = 5.9e-89
 Identities = 190/558 (34%), Positives = 307/558 (55%)

Query:    28 LDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKA 87
             +D  T+ SLL  C            H+ II      NL +   ++  YAK G +  AR+ 
Sbjct:   426 IDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALEDARQI 485

Query:    88 FDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWL 147
             F+RM +R+ V+W  +I  Y Q+  +  A  +F  M   G+ ++    +S L+AC  +  L
Sbjct:   486 FERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGL 545

Query:   148 QGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGL 207
               G+ +     K     +L   S+L+D+Y+KCG I+DA  +F  +    VVS NA+I G 
Sbjct:   546 YQGKQVHCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGY 605

Query:   208 AMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSN 267
             +     +++  LF+ M+ +G+ P   T  +I+ A      L   +Q H  I K G  S  
Sbjct:   606 SQNNL-EEAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKRGFSSEG 664

Query:   268 KLTG-SLIDVYAKYGSIRSAYQLYRSMLKT-DIISCTALISGFARDDNHSKEAFDLFKDM 325
             +  G SL+ +Y     +  A  L+  +     I+  T ++SG +++  + +EA   +K+M
Sbjct:   665 EYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFY-EEALKFYKEM 723

Query:   326 ILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEI 385
                 +  D      +L +C+ ++SL  GR IH+  F      D    N LIDMYAK G++
Sbjct:   724 RHDGVLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDM 783

Query:   386 ADANRAFDEMGDK-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA 444
               +++ FDEM  + NV+SW SLI GYAK+GY  +A++++  M+   ++P+++TFL +L A
Sbjct:   784 KGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTA 843

Query:   445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTAS 504
             CSH G   +G ++F  MI +Y I  R +H +C+VDL  R G L+ A + I   N+KP A 
Sbjct:   844 CSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDAR 903

Query:   505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME 564
             LWS++LGAC I+G+   GE++A  L ++EP+ S  YV+LSNIY + G W+ A   RK+M 
Sbjct:   904 LWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMR 963

Query:   565 ERSLRKNPGYSFLQSSKK 582
             +R ++K PGYS++   ++
Sbjct:   964 DRGVKKVPGYSWIDVEQR 981

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2060640 OTP81 "ORGANELLE TRANSCRIPT PROCESSING 81" [Arabidopsis thaliana (taxid:3702)]

 Score = 582 (209.9 bits), Expect = 1.3e-88, Sum P(2) = 1.3e-88
 Identities = 117/316 (37%), Positives = 186/316 (58%)

Query:   264 ESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFK 323
             E  N    +++D YA      +A ++  SM + DI++  ALIS + ++   + EA  +F 
Sbjct:   295 EKDNVTWTTMLDGYAISEDYEAAREVLNSMPQKDIVAWNALISAYEQNGKPN-EALIVFH 353

Query:   324 DMILKK-MGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS 382
             ++ L+K M ++ + L   L+ CA V +L LGR IH++  K+    +  V +ALI MY+K 
Sbjct:   354 ELQLQKNMKLNQITLVSTLSACAQVGALELGRWIHSYIKKHGIRMNFHVTSALIHMYSKC 413

Query:   383 GEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLL 442
             G++  +   F+ +  ++V  W+++I G A HG G+EA++++ KM+   + PN VTF ++ 
Sbjct:   414 GDLEKSREVFNSVEKRDVFVWSAMIGGLAMHGCGNEAVDMFYKMQEANVKPNGVTFTNVF 473

Query:   443 FACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPT 502
              ACSHTGL  E   LF  M + Y I+P  +H++C+VD+  R G LE A   I  M I P+
Sbjct:   474 CACSHTGLVDEAESLFHQMESNYGIVPEEKHYACIVDVLGRSGYLEKAVKFIEAMPIPPS 533

Query:   503 ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL 562
              S+W A+LGAC I+ N +L E+A   L ++EP     +V+LSNIY   G W+N  + RK 
Sbjct:   534 TSVWGALLGACKIHANLNLAEMACTRLLELEPRNDGAHVLLSNIYAKLGKWENVSELRKH 593

Query:   563 MEERSLRKNPGYSFLQ 578
             M    L+K PG S ++
Sbjct:   594 MRVTGLKKEPGCSSIE 609

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0031425 "chloroplast RNA processing" evidence=IMP

TAIR|locus:2119440 AT4G13650 [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 193/552 (34%), Positives = 292/552 (52%)

Query:    29 DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAF 88
             D +T  SL+  C       +   +HA+    G+ SN  +   ++  YAK  D+ +A   F
Sbjct:   388 DSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYF 447

Query:    89 DRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQ 148
                   NVV W  M+  Y       N+  +F  M    +  NQ+TY S L+ C R+  L+
Sbjct:   448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507

Query:   149 GGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLA 208
              G  I   I K  F  N +V S L+D+YAK G ++ AW +  R   KDVVSW  MI G  
Sbjct:   508 LGEQIHSQIIKTNFQLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYT 567

Query:   209 MQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNK 268
                F+D +   FR M+ +G++ D   L + + A  G   L +  QIH      G  S   
Sbjct:   568 QYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVSGFSSDLP 627

Query:   269 LTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILK 328
                +L+ +Y++ G I  +Y  +      D I+  AL+SGF +  N+ +EA  +F  M   
Sbjct:   628 FQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNN-EEALRVFVRM--N 684

Query:   329 KMGIDDVILCL--MLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIA 386
             + GID+        +   +  A++  G+Q+HA   K     +  V NALI MYAK G I+
Sbjct:   685 REGIDNNNFTFGSAVKAASETANMKQGKQVHAVITKTGYDSETEVCNALISMYAKCGSIS 744

Query:   387 DANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACS 446
             DA + F E+  KN +SW ++I  Y+KHG+G EA++ + +M H  + PN VT + +L ACS
Sbjct:   745 DAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLVGVLSACS 804

Query:   447 HTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLW 506
             H GL  +G   F  M ++Y + P+ EH+ CVVD+  R G L  A   I++M IKP A +W
Sbjct:   805 HIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPIKPDALVW 864

Query:   507 SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER 566
               +L AC ++ N  +GE AA +L ++EPE S  YV+LSN+Y  +  WD    TR+ M+E+
Sbjct:   865 RTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLTRQKMKEK 924

Query:   567 SLRKNPGYSFLQ 578
              ++K PG S+++
Sbjct:   925 GVKKEPGQSWIE 936

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082886 EMB2261 "embryo defective 2261" [Arabidopsis thaliana (taxid:3702)]

 Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
 Identities = 190/534 (35%), Positives = 310/534 (58%)

Query:    58 TNGYESNLHLSTKVIIFYAKVGDVL-SARKAFDRMPERNVVSWTAMISGYAQNGYDENAL 116
             T  +ES++ +   +I  + K  +   +A K FD+M E NVV+WT MI+   Q G+   A+
Sbjct:   195 TGHFESDVCVGCSLIDMFVKGENSFENAYKVFDKMSELNVVTWTLMITRCMQMGFPREAI 254

Query:   117 LVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQG-SIQKGRFVENLFVKSALLDL 175
               F  M+ SG  +++FT SS   ACA +  L  G+ +   +I+ G  V++  V+ +L+D+
Sbjct:   255 RFFLDMVLSGFESDKFTLSSVFSACAELENLSLGKQLHSWAIRSG-LVDD--VECSLVDM 311

Query:   176 YAKC---GWIEDAWILFERIERKDVVSWNAMIGGLAMQGFN--DDSFWLFRSMMRQG-MK 229
             YAKC   G ++D   +F+R+E   V+SW A+I G  M+  N   ++  LF  M+ QG ++
Sbjct:   312 YAKCSADGSVDDCRKVFDRMEDHSVMSWTALITGY-MKNCNLATEAINLFSEMITQGHVE 370

Query:   230 PDCFTLGSILRASVGGIELMKIS-QIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQ 288
             P+ FT  S  +A  G +   ++  Q+     K GL S++ +  S+I ++ K   +  A +
Sbjct:   371 PNHFTFSSAFKAC-GNLSDPRVGKQVLGQAFKRGLASNSSVANSVISMFVKSDRMEDAQR 429

Query:   289 LYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVA 348
              + S+ + +++S    + G  R+ N  ++AF L  ++  +++G+       +L+  ANV 
Sbjct:   430 AFESLSEKNLVSYNTFLDGTCRNLNF-EQAFKLLSEITERELGVSAFTFASLLSGVANVG 488

Query:   349 SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIA 408
             S+  G QIH+   K   S +  V NALI MY+K G I  A+R F+ M ++NVISWTS+I 
Sbjct:   489 SIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASRVFNFMENRNVISWTSMIT 548

Query:   409 GYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRIL 468
             G+AKHG+    +E + +M  EG+ PN+VT++++L ACSH GL  EGW  F  M   ++I 
Sbjct:   549 GFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIK 608

Query:   469 PRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARN 528
             P+ EH++C+VDL  R G L  A+  I  M  +    +W   LGAC ++ NT LG+LAAR 
Sbjct:   609 PKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARK 668

Query:   529 LFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSSKK 582
             + +++P +   Y+ LSNIY  AG W+ + + R+ M+ER+L K  G S+++   K
Sbjct:   669 ILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDK 722

GO:0009507 "chloroplast" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LT48	PP244_ARATH	No assigned EC number	0.5117	0.9338	0.9752	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00035691001 SubName- Full=Chromosome undetermined scaffold_80, whole genome shotgun sequence; (590 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	590
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-132
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-106
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-77
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-56
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-10
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	5e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-06
pfam01535	31	pfam01535, PPR, PPR repeat	6e-06
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-05
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-05
pfam01535	31	pfam01535, PPR, PPR repeat	2e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-04
pfam12854	34	pfam12854, PPR_1, PPR repeat	0.001
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.004
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.004

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  407 bits (1047), Expect = e-132
 Identities = 197/550 (35%), Positives = 312/550 (56%), Gaps = 3/550 (0%)

Query: 29  DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAF 88
           D  T+  +L+ C       +   +HAH++  G+E ++ +   +I  Y K GDV+SAR  F
Sbjct: 186 DVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVF 245

Query: 89  DRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQ 148
           DRMP R+ +SW AMISGY +NG     L +F  M    V  +  T +S + AC  +   +
Sbjct: 246 DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDER 305

Query: 149 GGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLA 208
            GR + G + K  F  ++ V ++L+ +Y   G   +A  +F R+E KD VSW AMI G  
Sbjct: 306 LGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365

Query: 209 MQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNK 268
             G  D +   +  M +  + PD  T+ S+L A     +L    ++H+L  + GL S   
Sbjct: 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVV 425

Query: 269 LTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILK 328
           +  +LI++Y+K   I  A +++ ++ + D+IS T++I+G  R +N   EA   F+ M+L 
Sbjct: 426 VANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGL-RLNNRCFEALIFFRQMLLT 484

Query: 329 KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADA 388
            +  + V L   L+ CA + +L  G++IHA   +    +D  + NAL+D+Y + G +  A
Sbjct: 485 -LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA 543

Query: 389 NRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT 448
              F+   +K+V+SW  L+ GY  HG G  A+EL+ +M   G+ P++VTF+SLL ACS +
Sbjct: 544 WNQFN-SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRS 602

Query: 449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSA 508
           G+  +G E F  M  KY I P  +H++CVVDL  R G+L  AYN I +M I P  ++W A
Sbjct: 603 GMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGA 662

Query: 509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL 568
           +L AC I+ +  LGELAA+++F+++P     Y++L N+Y  AG WD   + RK M E  L
Sbjct: 663 LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGL 722

Query: 569 RKNPGYSFLQ 578
             +PG S+++
Sbjct: 723 TVDPGCSWVE 732

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  334 bits (857), Expect = e-106
 Identities = 156/450 (34%), Positives = 261/450 (58%), Gaps = 1/450 (0%)

Query: 133 TYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERI 192
           TY + + AC  ++ ++  + +   ++   F  + ++ + +L ++ KCG + DA  LF+ +
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184

Query: 193 ERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKIS 252
             +++ SW  +IGGL   G   ++F LFR M   G   +  T   +LRAS G        
Sbjct: 185 PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ 244

Query: 253 QIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDD 312
           Q+H  ++K G+     ++ +LID+Y+K G I  A  ++  M +   ++  ++++G+A   
Sbjct: 245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH- 303

Query: 313 NHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVG 372
            +S+EA  L+ +M    + ID     +M+ I + +A L   +Q HA   +     D    
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVAN 363

Query: 373 NALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV 432
            AL+D+Y+K G + DA   FD M  KN+ISW +LIAGY  HG G +A+E++++M  EG+ 
Sbjct: 364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVA 423

Query: 433 PNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYN 492
           PN VTFL++L AC ++GL+ +GWE+F  M   +RI PRA H++C+++L  R G L+ AY 
Sbjct: 424 PNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA 483

Query: 493 MIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGA 552
           MIR+   KPT ++W+A+L AC I+ N  LG LAA  L+ M PEK  NYVVL N+Y ++G 
Sbjct: 484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGR 543

Query: 553 WDNARKTRKLMEERSLRKNPGYSFLQSSKK 582
              A K  + ++ + L  +P  ++++  K+
Sbjct: 544 QAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  262 bits (672), Expect = 1e-77
 Identities = 158/538 (29%), Positives = 273/538 (50%), Gaps = 25/538 (4%)

Query: 11  GQLKQALKFSLSCPDTLL--DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLS 68
           GQL+QALK   S  +  +  D   Y++L + C  K+A  +   + +  +++     + L 
Sbjct: 65  GQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124

Query: 69  TKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVR 128
             ++  + + G+++ A   F +MPER++ SW  ++ GYA+ GY + AL ++  ML +GVR
Sbjct: 125 NAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVR 184

Query: 129 ANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWIL 188
            + +T+   LR C  +  L  GR +   + +  F  ++ V +AL+ +Y KCG +  A ++
Sbjct: 185 PDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLV 244

Query: 189 FERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRAS--VGGI 246
           F+R+ R+D +SWNAMI G    G   +   LF +M    + PD  T+ S++ A   +G  
Sbjct: 245 FDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDE 304

Query: 247 ELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALIS 306
            L +  ++H  ++K G      +  SLI +Y   GS   A +++  M   D +S TA+IS
Sbjct: 305 RLGR--EMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMIS 362

Query: 307 GFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSS 366
           G+   +    +A + +  M    +  D++ +  +L+ CA +  L++G ++H  A +    
Sbjct: 363 GY-EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421

Query: 367 YDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKM 426
               V NALI+MY+K   I  A   F  + +K+VISWTS+IAG   +    EA+  +++M
Sbjct: 422 SYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQM 481

Query: 427 KHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDM----INKYRILPRAEHFSCVVDLFA 482
               + PN VT ++ L AC+  G    G E+   +    I     LP A     ++DL+ 
Sbjct: 482 LLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA-----LLDLYV 535

Query: 483 RRGQLESAYNMIRQMNI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN 539
           R G++  A+N   Q N  +     W+ +L     +G  S+    A  LF+   E  VN
Sbjct: 536 RCGRMNYAWN---QFNSHEKDVVSWNILLTGYVAHGKGSM----AVELFNRMVESGVN 586

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  200 bits (511), Expect = 4e-56
 Identities = 102/329 (31%), Positives = 178/329 (54%), Gaps = 10/329 (3%)

Query: 21  LSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGD 80
             CP TL   STY +L++ CI  K+ R    ++ H+ ++G+E + ++  +V++ + K G 
Sbjct: 115 AGCPFTL-PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGM 173

Query: 81  VLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRA 140
           ++ AR+ FD MPERN+ SW  +I G    G    A  +F  M   G  A   T+   LRA
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233

Query: 141 CARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSW 200
            A +   + G+ +   + K   V + FV  AL+D+Y+KCG IEDA  +F+ +  K  V+W
Sbjct: 234 SAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAW 293

Query: 201 NAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRAS--VGGIELMKISQIHDLI 258
           N+M+ G A+ G+++++  L+  M   G+  D FT   ++R    +  +E  K  Q H  +
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAK--QAHAGL 351

Query: 259 IKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSK-- 316
           I+ G         +L+D+Y+K+G +  A  ++  M + ++IS  ALI+G+    NH +  
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYG---NHGRGT 408

Query: 317 EAFDLFKDMILKKMGIDDVILCLMLNICA 345
           +A ++F+ MI + +  + V    +L+ C 
Sbjct: 409 KAVEMFERMIAEGVAPNHVTFLAVLSACR 437

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 67.2 bits (164), Expect = 2e-11
 Identities = 84/381 (22%), Positives = 148/381 (38%), Gaps = 90/381 (23%)

Query: 173 LDLYA---KCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMK 229
           +D Y    + G I+D   L E +E++ +         L M       F  F++  +Q   
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGL---------LDMDKIYHAKF--FKACKKQRAV 422

Query: 230 PDCFTLGSILRASVGGIELMKIS------------QIHDLIIKLGLESSNKLTGSLIDVY 277
            + F    ++R        M +S            ++  L+ + GL++  KL  +LI   
Sbjct: 423 KEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTC 482

Query: 278 AKYGSIRSAYQLYRSM----LKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGID 333
           AK G + + ++++  M    ++ ++ +  ALI G AR    +K AF  +  M  K +  D
Sbjct: 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK-AFGAYGIMRSKNVKPD 541

Query: 334 DVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFD 393
            V+                                    NALI    +SG +    RAFD
Sbjct: 542 RVVF-----------------------------------NALISACGQSGAVD---RAFD 563

Query: 394 ---EMG------DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA 444
              EM       D + I+  +L+   A  G    A E+Y+ +    +      +   + +
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623

Query: 445 CSHTGLTCEGWE----LFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMN-- 498
           CS  G     W+    ++ DM  K  + P    FS +VD+    G L+ A+ +++     
Sbjct: 624 CSQKG----DWDFALSIYDDM-KKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678

Query: 499 -IKPTASLWSAILGACSIYGN 518
            IK     +S+++GACS   N
Sbjct: 679 GIKLGTVSYSSLMGACSNAKN 699

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 59.0 bits (144), Expect = 2e-11
 Identities = 17/50 (34%), Positives = 29/50 (58%)

Query: 398 KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH 447
            +V+++ +LI GY K G   EA++L+ +MK  G+ PN  T+  L+     
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.1 bits (134), Expect = 4e-10
 Identities = 16/49 (32%), Positives = 29/49 (59%)

Query: 95  NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACAR 143
           +VV++  +I GY + G  E AL +F+ M + G++ N +TYS  +    +
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 62.2 bits (151), Expect = 5e-10
 Identities = 68/303 (22%), Positives = 125/303 (41%), Gaps = 41/303 (13%)

Query: 274 IDVYA---KYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSK------------EA 318
           ID Y    + G I+    L   M K  ++    +         H+K            EA
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKI--------YHAKFFKACKKQRAVKEA 425

Query: 319 FDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDM 378
           F   K +    +        +++++CA+   ++   ++     +     D  +   LI  
Sbjct: 426 FRFAKLIRNPTLST----FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST 481

Query: 379 YAKSGEIADANRAFDEMG----DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN 434
            AKSG++      F EM     + NV ++ +LI G A+ G   +A   Y  M+ + + P+
Sbjct: 482 CAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPD 541

Query: 435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYR-ILPRAEHFSCVVDLFARRGQLESA--- 490
            V F +L+ AC  +G     +++  +M  +   I P       ++   A  GQ++ A   
Sbjct: 542 RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601

Query: 491 YNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV--NYVVLSNIYT 548
           Y MI + NIK T  +++  + +CS  G+       A +++D   +K V  + V  S +  
Sbjct: 602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDF----ALSIYDDMKKKGVKPDEVFFSALVD 657

Query: 549 AAG 551
            AG
Sbjct: 658 VAG 660

Length = 1060

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 44.3 bits (106), Expect = 3e-06
 Identities = 14/47 (29%), Positives = 28/47 (59%)

Query: 195 KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRA 241
            DVV++N +I G   +G  +++  LF  M ++G+KP+ +T   ++  
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 42.8 bits (102), Expect = 6e-06
 Identities = 15/31 (48%), Positives = 24/31 (77%)

Query: 401 ISWTSLIAGYAKHGYGHEAIELYKKMKHEGM 431
           +++ SLI+GY K G   EA+EL+K+MK +G+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 42.0 bits (100), Expect = 1e-05
 Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 4/44 (9%)

Query: 373 NALIDMYAKSGEIADANRAFDEMGDK----NVISWTSLIAGYAK 412
           N LID Y K G++ +A + F+EM  +    NV +++ LI G  K
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 42.1 bits (100), Expect = 1e-05
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 401 ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND 435
           +++ +LI G  K G   EA+EL+K+MK  G+ P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 47.2 bits (112), Expect = 2e-05
 Identities = 72/363 (19%), Positives = 148/363 (40%), Gaps = 54/363 (14%)

Query: 99  WTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ 158
           +T +IS  A++G  +    VF  M+ +GV AN  T+ + +  CAR           G + 
Sbjct: 475 YTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCAR----------AGQVA 524

Query: 159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFW 218
           K                +   G      I+  +  + D V +NA+I      G  D +F 
Sbjct: 525 KA---------------FGAYG------IMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563

Query: 219 LFRSMMRQG--MKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDV 276
           +   M  +   + PD  T+G++++A     ++ +  +++ +I +  ++ + ++    ++ 
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623

Query: 277 YAKYGSIRSAYQLYRSMLKTDI----ISCTALI--SGFARDDNHSKEAFDLFKDMILKKM 330
            ++ G    A  +Y  M K  +    +  +AL+  +G A D     +AF++ +D   + +
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD---LDKAFEILQDARKQGI 680

Query: 331 GIDDVILCLMLNICANVA----SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIA 386
            +  V    ++  C+N      +L L   I +   +   S      NALI    +  ++ 
Sbjct: 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVS----TMNALITALCEGNQLP 736

Query: 387 DANRAFDEMGD----KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLL 442
            A     EM       N I+++ L+    +       ++L  + K +G+ PN V    + 
Sbjct: 737 KALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT 796

Query: 443 FAC 445
             C
Sbjct: 797 GLC 799

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 13/31 (41%), Positives = 19/31 (61%)

Query: 97  VSWTAMISGYAQNGYDENALLVFSAMLRSGV 127
           V++ ++ISGY + G  E AL +F  M   GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.8 bits (89), Expect = 6e-04
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 297 DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGI 332
           D+++   LI G+ +     +EA  LF +M  KK GI
Sbjct: 2   DVVTYNTLIDGYCKK-GKVEEALKLFNEM--KKRGI 34

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 36.2 bits (85), Expect = 0.001
 Identities = 10/29 (34%), Positives = 19/29 (65%)

Query: 399 NVISWTSLIAGYAKHGYGHEAIELYKKMK 427
           +V+++ +LI G  + G   EA+EL  +M+
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 35.5 bits (83), Expect = 0.004
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 272 SLIDVYAKYGSIRSAYQLYRSMLKT----DIISCTALISGFAR 310
           +LID Y K G +  A +L+  M K     ++ + + LI G  +
Sbjct: 8   TLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 9/34 (26%), Positives = 19/34 (55%)

Query: 400 VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP 433
           + ++ +L+   AK G    A+ + ++MK  G+ P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	590
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.98
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.94
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.92
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.9
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.89
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.89
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.87
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.86
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.86
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.85
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.84
PRK14574	822	hmsH outer membrane protein; Provisional	99.84
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.83
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.83
PRK14574	822	hmsH outer membrane protein; Provisional	99.83
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.81
KOG2003	840	consensus TPR repeat-containing protein [General f	99.81
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.78
KOG2076	895	consensus RNA polymerase III transcription factor	99.77
KOG2076	895	consensus RNA polymerase III transcription factor	99.75
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.75
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.71
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.68
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.67
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.66
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.66
KOG2003	840	consensus TPR repeat-containing protein [General f	99.64
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.61
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.59
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.58
KOG1126	638	consensus DNA-binding cell division cycle control	99.57
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.57
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.55
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.55
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.54
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.53
KOG1126	638	consensus DNA-binding cell division cycle control	99.52
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.52
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.51
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.5
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.5
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.48
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.45
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.43
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.42
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.42
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.39
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.39
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.36
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.35
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.34
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.33
KOG1129	478	consensus TPR repeat-containing protein [General f	99.32
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.31
PF13041	50	PPR_2: PPR repeat family	99.31
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.31
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.31
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.29
PRK12370	553	invasion protein regulator; Provisional	99.29
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.28
PF13041	50	PPR_2: PPR repeat family	99.27
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.26
PRK11189	296	lipoprotein NlpI; Provisional	99.23
PRK12370	553	invasion protein regulator; Provisional	99.22
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.22
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.22
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.21
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.18
KOG1129	478	consensus TPR repeat-containing protein [General f	99.15
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.11
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.1
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.09
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.07
PRK11189	296	lipoprotein NlpI; Provisional	99.05
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.03
KOG1125	579	consensus TPR repeat-containing protein [General f	99.03
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.01
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.0
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.99
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.99
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.97
PRK04841	903	transcriptional regulator MalT; Provisional	98.95
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.95
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.92
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.91
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.89
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.87
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.87
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.85
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.85
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.85
PRK15359	144	type III secretion system chaperone protein SscB;	98.82
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.81
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.74
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.73
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.71
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.71
PRK15359	144	type III secretion system chaperone protein SscB;	98.67
PRK04841	903	transcriptional regulator MalT; Provisional	98.62
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.6
PF12854	34	PPR_1: PPR repeat	98.6
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.59
PF12854	34	PPR_1: PPR repeat	98.57
PLN02789	320	farnesyltranstransferase	98.56
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.56
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.54
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.54
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.54
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.52
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.52
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.49
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.49
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.48
PLN02789	320	farnesyltranstransferase	98.47
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.46
KOG1125	579	consensus TPR repeat-containing protein [General f	98.43
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.41
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.39
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.37
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.35
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.34
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.31
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.3
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.25
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.24
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.22
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.22
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.22
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.22
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.2
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.19
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.19
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.16
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.15
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.13
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.09
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.09
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.08
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.08
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.05
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.02
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.01
KOG0553	304	consensus TPR repeat-containing protein [General f	98.01
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.98
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.94
PF13371	73	TPR_9: Tetratricopeptide repeat	97.93
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.93
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.92
KOG0553	304	consensus TPR repeat-containing protein [General f	97.89
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.85
PRK15331	165	chaperone protein SicA; Provisional	97.83
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	97.82
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.81
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.76
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.76
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.75
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.74
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.74
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.73
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.73
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.69
PF13431	34	TPR_17: Tetratricopeptide repeat	97.67
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.66
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.65
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.65
PRK10803	263	tol-pal system protein YbgF; Provisional	97.63
PF12688	120	TPR_5: Tetratrico peptide repeat	97.61
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.61
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.6
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.6
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.57
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.57
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.56
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.53
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.52
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.51
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.51
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.51
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.45
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.41
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.41
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.4
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.38
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.37
PF13428	44	TPR_14: Tetratricopeptide repeat	97.36
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.32
PRK10803	263	tol-pal system protein YbgF; Provisional	97.3
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.3
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.28
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.27
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.25
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.15
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.14
PF13371	73	TPR_9: Tetratricopeptide repeat	97.08
KOG1258	577	consensus mRNA processing protein [RNA processing	97.05
PF13512	142	TPR_18: Tetratricopeptide repeat	97.03
PF12688	120	TPR_5: Tetratrico peptide repeat	97.01
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.99
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.97
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.92
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.89
PRK11906	458	transcriptional regulator; Provisional	96.88
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.84
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.81
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.81
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	96.78
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.74
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.68
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.65
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.65
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.63
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.62
KOG4555	175	consensus TPR repeat-containing protein [Function	96.6
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.54
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	96.51
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.49
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.46
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.38
PRK11619	644	lytic murein transglycosylase; Provisional	96.34
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.3
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	96.2
KOG1585	308	consensus Protein required for fusion of vesicles	96.15
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.13
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	96.1
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.09
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.07
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.06
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.03
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.0
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.95
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.9
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.83
KOG3941	406	consensus Intermediate in Toll signal transduction	95.76
PF03704	146	BTAD: Bacterial transcriptional activator domain;	95.73
PRK15331	165	chaperone protein SicA; Provisional	95.7
PF13512	142	TPR_18: Tetratricopeptide repeat	95.69
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.64
KOG3941	406	consensus Intermediate in Toll signal transduction	95.58
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.58
KOG4555	175	consensus TPR repeat-containing protein [Function	95.57
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.44
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.43
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.41
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	95.38
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.37
PRK11906	458	transcriptional regulator; Provisional	95.33
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	95.29
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.22
COG3118	304	Thioredoxin domain-containing protein [Posttransla	95.21
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.0
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	95.0
KOG4234	271	consensus TPR repeat-containing protein [General f	94.94
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.77
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	94.76
COG0457	291	NrfG FOG: TPR repeat [General function prediction	94.72
PF13428	44	TPR_14: Tetratricopeptide repeat	94.71
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.67
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.6
PRK09687	280	putative lyase; Provisional	94.57
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.53
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	94.43
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	94.3
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	94.06
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	94.03
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.01
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	94.01
smart00299	140	CLH Clathrin heavy chain repeat homology.	93.99
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	93.97
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.82
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	93.45
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.44
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	93.41
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.39
KOG1585	308	consensus Protein required for fusion of vesicles	93.13
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.05
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	92.98
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.82
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.65
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	92.54
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	92.52
KOG4648	536	consensus Uncharacterized conserved protein, conta	92.42
PRK09687	280	putative lyase; Provisional	92.39
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	92.35
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.3
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	91.71
PRK12798	421	chemotaxis protein; Reviewed	91.38
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.11
KOG1586	288	consensus Protein required for fusion of vesicles	90.89
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.87
COG1747	711	Uncharacterized N-terminal domain of the transcrip	90.8
PF13431	34	TPR_17: Tetratricopeptide repeat	90.49
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	90.38
KOG4234	271	consensus TPR repeat-containing protein [General f	90.34
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.33
COG3629	280	DnrI DNA-binding transcriptional activator of the	90.02
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.01
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.95
KOG1258	577	consensus mRNA processing protein [RNA processing	89.74
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	89.65
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	89.36
KOG4648	536	consensus Uncharacterized conserved protein, conta	89.32
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	89.24
COG4455	273	ImpE Protein of avirulence locus involved in tempe	89.09
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	88.89
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	88.76
PRK10941	269	hypothetical protein; Provisional	88.58
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	88.54
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.5
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	88.27
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	88.04
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	87.81
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	87.57
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	87.52
KOG4570	418	consensus Uncharacterized conserved protein [Funct	87.43
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	87.3
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	87.09
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	87.06
PRK11619	644	lytic murein transglycosylase; Provisional	86.99
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	86.8
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.5
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	86.49
COG5159	421	RPN6 26S proteasome regulatory complex component [	86.43
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	86.37
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	86.34
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	86.09
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	85.37
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	85.27
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	85.08
KOG3807	556	consensus Predicted membrane protein ST7 (tumor su	85.07
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	84.9
COG3947	361	Response regulator containing CheY-like receiver a	84.89
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	84.5
KOG4570	418	consensus Uncharacterized conserved protein [Funct	84.39
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	84.11
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	81.5
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	81.25
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	81.1
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	80.93
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	80.62
KOG3364	149	consensus Membrane protein involved in organellar	80.37
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	80.13

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.1e-90  Score=735.65  Aligned_cols=584  Identities=35%  Similarity=0.614  Sum_probs=565.9

Q ss_pred             CcccccccccCChHHHHHHhhhC--CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 038522            1 MNIVRANFKTGQLKQALKFSLSC--PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKV   78 (590)
Q Consensus         1 ~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~   78 (590)
                      |+||++|++.|++++|+.+|++|  .+..||..+|+.++++|...+++..+.+++..+.+.|+.||..+++.++.+|++.
T Consensus       156 n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~  235 (857)
T PLN03077        156 NVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC  235 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC
Confidence            35778888888888888888888  6788888888888888888888888888888888888888888999999999999


Q ss_pred             CChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522           79 GDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ  158 (590)
Q Consensus        79 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  158 (590)
                      |+++.|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..|.
T Consensus       236 g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~  315 (857)
T PLN03077        236 GDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV  315 (857)
T ss_pred             CCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 038522          159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI  238 (590)
Q Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  238 (590)
                      +.|+.||..+|+.|+++|++.|++++|.++|++|..||..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus       316 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l  395 (857)
T PLN03077        316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV  395 (857)
T ss_pred             HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHH
Q 038522          239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEA  318 (590)
Q Consensus       239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a  318 (590)
                      +.+|++.|+++.+.++++.+.+.|+.|+..+++.|+.+|++.|++++|.++|++|.++|..+|+.++.+|++.++ .++|
T Consensus       396 l~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~-~~eA  474 (857)
T PLN03077        396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNR-CFEA  474 (857)
T ss_pred             HHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCC-HHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 038522          319 FDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK  398 (590)
Q Consensus       319 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  398 (590)
                      +.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.++..++++++++|+++|++++|.++|+.+ .+
T Consensus       475 ~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~  552 (857)
T PLN03077        475 LIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EK  552 (857)
T ss_pred             HHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CC
Confidence            999999985 6999999999999999999999999999999999999999999999999999999999999999999 89


Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522          399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV  478 (590)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  478 (590)
                      |..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++
T Consensus       553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv  632 (857)
T PLN03077        553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV  632 (857)
T ss_pred             ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999997779999999999999


Q ss_pred             HHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038522          479 DLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARK  558 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  558 (590)
                      ++|.+.|++++|.+++++|+++||..+|++|+.+|..+|+.+.++...+++++++|+++..|..|+++|+..|+|++|.+
T Consensus       633 ~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~  712 (857)
T PLN03077        633 DLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVAR  712 (857)
T ss_pred             HHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcCCccCCCceEEeecCcccccc
Q 038522          559 TRKLMEERSLRKNPGYSFLQSSKKNILLL  587 (590)
Q Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  587 (590)
                      +.+.|+++|++++||+||+++.++++.|+
T Consensus       713 vr~~M~~~g~~k~~g~s~ie~~~~~~~f~  741 (857)
T PLN03077        713 VRKTMRENGLTVDPGCSWVEVKGKVHAFL  741 (857)
T ss_pred             HHHHHHHcCCCCCCCccEEEECCEEEEEe
Confidence            99999999999999999999999999985

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.9e-80  Score=659.46  Aligned_cols=566  Identities=27%  Similarity=0.465  Sum_probs=535.5

Q ss_pred             CcccccccccCChHHHHHHhhhC--CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 038522            1 MNIVRANFKTGQLKQALKFSLSC--PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKV   78 (590)
Q Consensus         1 ~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~   78 (590)
                      |.++++|.+.|++++|+.+|+.+  .+.+|+..+|..++++|.+.+.++.+.+++..+.+.+..++...++.++..|++.
T Consensus        55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~  134 (857)
T PLN03077         55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF  134 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhC
Confidence            46788999999999999999999  7789999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522           79 GDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ  158 (590)
Q Consensus        79 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  158 (590)
                      |+++.|.++|++|.+||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..|.
T Consensus       135 g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~  214 (857)
T PLN03077        135 GELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVV  214 (857)
T ss_pred             CChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 038522          159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI  238 (590)
Q Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  238 (590)
                      +.|+.||..+++.|+++|++.|++++|.++|++|.++|..+||++|.+|++.|++++|+++|++|...|+.||..||+.+
T Consensus       215 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l  294 (857)
T PLN03077        215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV  294 (857)
T ss_pred             HcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHH
Q 038522          239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEA  318 (590)
Q Consensus       239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a  318 (590)
                      +.+|++.|+.+.+.+++..+.+.|+.||..+|+.|+.+|++.|++++|.++|++|..+|..+|+.++.+|++.|+ +++|
T Consensus       295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~-~~~A  373 (857)
T PLN03077        295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGL-PDKA  373 (857)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCC-HHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 038522          319 FDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK  398 (590)
Q Consensus       319 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  398 (590)
                      +++|++|.+.|+.||..||+.++.+|++.|+++.+.++++.+.+.|+.|+..+++.|+++|++.|++++|.++|++|.++
T Consensus       374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~  453 (857)
T PLN03077        374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK  453 (857)
T ss_pred             HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522          399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV  478 (590)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  478 (590)
                      |..+|++++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+. |+.++..++++|+
T Consensus       454 d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi  531 (857)
T PLN03077        454 DVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALL  531 (857)
T ss_pred             CeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHH
Confidence            999999999999999999999999999986 59999999999999999999999999999999887 8888888888888


Q ss_pred             HHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhc--CCCCCcchHHHHHHHHHhcCChHHH
Q 038522          479 DLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFD--MEPEKSVNYVVLSNIYTAAGAWDNA  556 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A  556 (590)
                      ++|.++|++++|.++|+++  .||..+|+.++.+|.+.|+.++|+++|+++.+  ..| |..+|..++.+|.+.|++++|
T Consensus       532 ~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~P-d~~T~~~ll~a~~~~g~v~ea  608 (857)
T PLN03077        532 DLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNP-DEVTFISLLCACSRSGMVTQG  608 (857)
T ss_pred             HHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CcccHHHHHHHHhhcChHHHH
Confidence            8888888888888888777  67778888888888888888888888887774  345 677777777888888888888


Q ss_pred             HHHHHHhh-hcCCccCC
Q 038522          557 RKTRKLME-ERSLRKNP  572 (590)
Q Consensus       557 ~~~~~~~~-~~~~~~~~  572 (590)
                      .++|+.|. +.|+.|+.
T Consensus       609 ~~~f~~M~~~~gi~P~~  625 (857)
T PLN03077        609 LEYFHSMEEKYSITPNL  625 (857)
T ss_pred             HHHHHHHHHHhCCCCch
Confidence            88888887 46766653

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=1e-75  Score=608.56  Aligned_cols=493  Identities=33%  Similarity=0.588  Sum_probs=485.1

Q ss_pred             CCccchHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHH
Q 038522           94 RNVVSWTAMISGYAQNGYDENALLVFSAMLRSG-VRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSAL  172 (590)
Q Consensus        94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  172 (590)
                      ++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.|
T Consensus        85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L  164 (697)
T PLN03081         85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV  164 (697)
T ss_pred             CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence            567799999999999999999999999998764 7899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHH
Q 038522          173 LDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKIS  252 (590)
Q Consensus       173 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  252 (590)
                      +++|++.|++++|.++|++|.+||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~  244 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQ  244 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 038522          253 QIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGI  332 (590)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p  332 (590)
                      +++..+.+.|+.||..+++.|+.+|++.|++++|.++|++|.++|..+||.++.+|++.|+ +++|+++|++|.+.|+.|
T Consensus       245 ~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~-~~eA~~lf~~M~~~g~~p  323 (697)
T PLN03081        245 QLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGY-SEEALCLYYEMRDSGVSI  323 (697)
T ss_pred             HHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCC-HHHHHHHHHHHHHcCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999 999999999999999999


Q ss_pred             CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038522          333 DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAK  412 (590)
Q Consensus       333 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~  412 (590)
                      |..||+.++.+|++.|+++.|.+++..+.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+||..+||+||.+|++
T Consensus       324 d~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~  403 (697)
T PLN03081        324 DQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGN  403 (697)
T ss_pred             CHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 038522          413 HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYN  492 (590)
Q Consensus       413 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  492 (590)
                      .|+.++|+++|++|.+.|+.||..||+.++.+|.+.|.+++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++|.+
T Consensus       404 ~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~  483 (697)
T PLN03081        404 HGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYA  483 (697)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999877999999999999999999999999999


Q ss_pred             HHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCC
Q 038522          493 MIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNP  572 (590)
Q Consensus       493 ~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  572 (590)
                      ++++|+..|+..+|+.++.+|...|+++.|..+++++.++.|++...|..|+.+|.+.|++++|.++++.|+++|+++.|
T Consensus       484 ~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~  563 (697)
T PLN03081        484 MIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHP  563 (697)
T ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceEEeecCcccccc
Q 038522          573 GYSFLQSSKKNILLL  587 (590)
Q Consensus       573 ~~~~~~~~~~~~~~~  587 (590)
                      ++||+++.++++.|+
T Consensus       564 g~s~i~~~~~~~~f~  578 (697)
T PLN03081        564 ACTWIEVKKQDHSFF  578 (697)
T ss_pred             CeeEEEECCeEEEEc
Confidence            999999999999886

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1e-68  Score=557.47  Aligned_cols=542  Identities=16%  Similarity=0.189  Sum_probs=426.9

Q ss_pred             HHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhcCChHHHHHHhccCCCC
Q 038522           16 ALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGY-ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPER   94 (590)
Q Consensus        16 a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~   94 (590)
                      +...++.....+++...|..++..+.+.|++++|.++|++|.+.|+ +++..+++.++..|.+.|.+++|..+|+.|..|
T Consensus       356 ~~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~p  435 (1060)
T PLN03218        356 SLAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNP  435 (1060)
T ss_pred             hHHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCC
Confidence            4444444455667788899999999999999999999999999886 567888889999999999999999999999999


Q ss_pred             CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHH
Q 038522           95 NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLD  174 (590)
Q Consensus        95 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  174 (590)
                      |..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.+++++|.+.|+.||..+|+.+|+
T Consensus       436 d~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~  515 (1060)
T PLN03218        436 TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID  515 (1060)
T ss_pred             CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCChHHHHHHHhccCC----CCcchHHHHHHHHHhcCCchHHHHHHHHHHH--cCCCCChhhHHHHHHHhccCCCh
Q 038522          175 LYAKCGWIEDAWILFERIER----KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR--QGMKPDCFTLGSILRASVGGIEL  248 (590)
Q Consensus       175 ~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~  248 (590)
                      +|++.|++++|.++|++|.+    ||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++
T Consensus       516 gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~l  595 (1060)
T PLN03218        516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV  595 (1060)
T ss_pred             HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCH
Confidence            99999999999988888853    7888888888888888888888888888875  56788888888888888888888


Q ss_pred             hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc----CCCccchHHHHHHHHhcCCChHHHHHHHHH
Q 038522          249 MKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSML----KTDIISCTALISGFARDDNHSKEAFDLFKD  324 (590)
Q Consensus       249 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~  324 (590)
                      ++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.    .||..+|+.++.+|++.++ .++|.+++++
T Consensus       596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~-~eeA~~l~~e  674 (1060)
T PLN03218        596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGD-LDKAFEILQD  674 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCC-HHHHHHHHHH
Confidence            8888888888888888888888888888888888777777777772    4566677777777777776 7777777777


Q ss_pred             HHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC----CCCc
Q 038522          325 MILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG----DKNV  400 (590)
Q Consensus       325 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~  400 (590)
                      |.+.|+.||..+|+.++.+|++.|+++.|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.    .||.
T Consensus       675 M~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~  754 (1060)
T PLN03218        675 ARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNT  754 (1060)
T ss_pred             HHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCH
Confidence            777777777777777777777777777777777777666677777777777777777777777777777664    3666


Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 038522          401 ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL  480 (590)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  480 (590)
                      .+|++++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.  +.++++..+.+.+..-   .+        ...
T Consensus       755 ~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f---~~--------g~~  821 (1060)
T PLN03218        755 ITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSF---DS--------GRP  821 (1060)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhh---hc--------ccc
Confidence            6777777777777777777777777777777777777776665443  2344444443333211   00        000


Q ss_pred             HHhcCChHHHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHh-cCCCCCcchHHHHHHHHHhcCChHHH
Q 038522          481 FARRGQLESAYNMIRQM---NIKPTASLWSAILGACSIYGNTSLGELAARNLF-DMEPEKSVNYVVLSNIYTAAGAWDNA  556 (590)
Q Consensus       481 ~~~~g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A  556 (590)
                      ....+..++|+.+|++|   |+.||..+|+.++..+...+..+.+...++.+. .-.+.+..+|..|+.++.+  ..++|
T Consensus       822 ~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~--~~~~A  899 (1060)
T PLN03218        822 QIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGE--YDPRA  899 (1060)
T ss_pred             ccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhcc--ChHHH
Confidence            11122346799999999   999999999999977778888888888887765 3345578899999998732  23689


Q ss_pred             HHHHHHhhhcCCccCCC
Q 038522          557 RKTRKLMEERSLRKNPG  573 (590)
Q Consensus       557 ~~~~~~~~~~~~~~~~~  573 (590)
                      ..++++|.+.|+.|+..
T Consensus       900 ~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        900 FSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             HHHHHHHHHcCCCCCcc
Confidence            99999999999988764

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=4.2e-68  Score=551.70  Aligned_cols=464  Identities=25%  Similarity=0.420  Sum_probs=450.7

Q ss_pred             cccccccccCChHHHHHHhhhC---CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 038522            2 NIVRANFKTGQLKQALKFSLSC---PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKV   78 (590)
Q Consensus         2 ~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~   78 (590)
                      +++.+|.+.|++++|+.+|+.+   .+..||..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++..|++.
T Consensus        92 ~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~  171 (697)
T PLN03081         92 SQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC  171 (697)
T ss_pred             HHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC
Confidence            5678899999999999999999   3468999999999999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522           79 GDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ  158 (590)
Q Consensus        79 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  158 (590)
                      |+++.|.++|++|.+||..+||.+|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|+.+.+.+++..+.
T Consensus       172 g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~  251 (697)
T PLN03081        172 GMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL  251 (697)
T ss_pred             CCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 038522          159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI  238 (590)
Q Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  238 (590)
                      +.|+.||..+++.|+++|++.|++++|.++|++|.++|..+||.+|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus       252 ~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~l  331 (697)
T PLN03081        252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM  331 (697)
T ss_pred             HhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHH
Q 038522          239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEA  318 (590)
Q Consensus       239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a  318 (590)
                      +.+|++.|+++.|.+++..|.+.|++||..+++.|+.+|++.|++++|.++|++|.++|..+||.+|.+|++.|+ .++|
T Consensus       332 l~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~-~~~A  410 (697)
T PLN03081        332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGR-GTKA  410 (697)
T ss_pred             HHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCC-HHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHH-hCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC-
Q 038522          319 FDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFK-YQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG-  396 (590)
Q Consensus       319 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-  396 (590)
                      +++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.++++++. 
T Consensus       411 ~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~  490 (697)
T PLN03081        411 VEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPF  490 (697)
T ss_pred             HHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCC
Confidence            99999999999999999999999999999999999999999976 6999999999999999999999999999999997 


Q ss_pred             CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC
Q 038522          397 DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP  469 (590)
Q Consensus       397 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  469 (590)
                      +|+..+|++|+.+|...|+.+.|..+++++.+  +.| +..+|..++..|++.|++++|.++++.|.++ |+..
T Consensus       491 ~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~-g~~k  561 (697)
T PLN03081        491 KPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK-GLSM  561 (697)
T ss_pred             CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc-CCcc
Confidence            68999999999999999999999999999975  466 4679999999999999999999999999988 7754

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.1e-66  Score=542.23  Aligned_cols=494  Identities=15%  Similarity=0.192  Sum_probs=421.0

Q ss_pred             ccccccccCChHHHHHHhhhC--CC-CCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 038522            3 IVRANFKTGQLKQALKFSLSC--PD-TLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVG   79 (590)
Q Consensus         3 l~~~~~~~g~~~~a~~~~~~~--~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g   79 (590)
                      ++..+.+.|++++|+++|+.|  .+ .+++...++.++..|.+.|.+++|..+++.|..    ||..+|+.++.+|++.|
T Consensus       376 ~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~~k~g  451 (1060)
T PLN03218        376 AYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVCASSQ  451 (1060)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHHHhCc
Confidence            456677888999999999988  44 356667778888888888888888888887753    78888888888888888


Q ss_pred             ChHHHHHHhccCCC----CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHH
Q 038522           80 DVLSARKAFDRMPE----RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQG  155 (590)
Q Consensus        80 ~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  155 (590)
                      +++.|.++|+.|.+    ||..+|+.||.+|++.|+++.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|+
T Consensus       452 ~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~  531 (1060)
T PLN03218        452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG  531 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            88888888888864    78888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccC------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 038522          156 SIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIE------RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMK  229 (590)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  229 (590)
                      .|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.      .||..+|+++|.+|++.|++++|.++|++|.+.|++
T Consensus       532 ~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~  611 (1060)
T PLN03218        532 IMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIK  611 (1060)
T ss_pred             HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC
Confidence            88888888888888888888888888888888888884      378888888888888888888888888888888888


Q ss_pred             CChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc----CCCccchHHHH
Q 038522          230 PDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSML----KTDIISCTALI  305 (590)
Q Consensus       230 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~l~  305 (590)
                      |+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.    .|+..+|+.++
T Consensus       612 p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI  691 (1060)
T PLN03218        612 GTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM  691 (1060)
T ss_pred             CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888883    56788888888


Q ss_pred             HHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCh
Q 038522          306 SGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEI  385 (590)
Q Consensus       306 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  385 (590)
                      .+|++.|+ +++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.||..+|+.++.+|++.|++
T Consensus       692 ~ay~k~G~-~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~l  770 (1060)
T PLN03218        692 GACSNAKN-WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDA  770 (1060)
T ss_pred             HHHHhCCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCH
Confidence            88888888 88888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHhcC----CCCcchHHHHHHHHHh-----------------------cCCchHHHHHHHHHHHcCCCCcHHHH
Q 038522          386 ADANRAFDEMG----DKNVISWTSLIAGYAK-----------------------HGYGHEAIELYKKMKHEGMVPNDVTF  438 (590)
Q Consensus       386 ~~A~~~~~~~~----~~~~~~~~~l~~~~~~-----------------------~~~~~~a~~~~~~m~~~g~~p~~~~~  438 (590)
                      ++|.++|++|.    .||..+|++++..|.+                       .+..+.|+.+|++|.+.|+.||..||
T Consensus       771 e~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~  850 (1060)
T PLN03218        771 DVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL  850 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence            88888888886    4788888888765432                       11236799999999999999999999


Q ss_pred             HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---CCCCCHh
Q 038522          439 LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM---NIKPTAS  504 (590)
Q Consensus       439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p~~~  504 (590)
                      +.++.++...+....+..+++.|... +..|+..+|+.+|+++.+.  .++|..++++|   |+.|+..
T Consensus       851 ~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi~p~~~  916 (1060)
T PLN03218        851 SQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGVVPSVS  916 (1060)
T ss_pred             HHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence            99998888888899999999888766 7888899999999988432  46899999999   8888764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=7.2e-36  Score=326.62  Aligned_cols=549  Identities=12%  Similarity=0.064  Sum_probs=304.1

Q ss_pred             cccccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHH
Q 038522            6 ANFKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSA   84 (590)
Q Consensus         6 ~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a   84 (590)
                      .+...|++++|+..|+++ ...+.+...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|
T Consensus       304 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A  382 (899)
T TIGR02917       304 SEYQLGNLEQAYQYLNQILKYAPNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKA  382 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            455667777777777776 3334444555666666667777777777777766654 44556666666777777777777


Q ss_pred             HHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC
Q 038522           85 RKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGR  161 (590)
Q Consensus        85 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  161 (590)
                      ...|+++.+   .+...|..+...+...|++++|++.++.+.+.... .......++..+.+.|+++.|..+++.+.+. 
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-  460 (899)
T TIGR02917       383 AEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKK-  460 (899)
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-
Confidence            777766543   23344555566666666666666666666554311 2223334445555666666666666666553 


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 038522          162 FVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI  238 (590)
Q Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  238 (590)
                      .+++..++..+...|...|++++|.+.|+++.+   .+...+..+...+...|++++|.+.++++...+ +.+..++..+
T Consensus       461 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l  539 (899)
T TIGR02917       461 QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL  539 (899)
T ss_pred             CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence            234455566666666666666666666655532   233445555555666666666666666655443 2344455555


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC---CCccchHHHHHHHHhcCCCh
Q 038522          239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK---TDIISCTALISGFARDDNHS  315 (590)
Q Consensus       239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~  315 (590)
                      ...+.+.|+.++|..+++.+.+.+ +.+...+..++..|...|++++|..+++.+..   .+...|..+...+...++ +
T Consensus       540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~  617 (899)
T TIGR02917       540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGD-L  617 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-H
Confidence            555555666666666666555443 33444455555556666666666666555531   233455555555555555 5


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          316 KEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEM  395 (590)
Q Consensus       316 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  395 (590)
                      ++|...|+++.+.. +.+...+..+...+...|+++.|..+++.+.+..+. +...+..++..+...|++++|.++++.+
T Consensus       618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~  695 (899)
T TIGR02917       618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSL  695 (899)
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            66666665555432 223344455555555556666666655555544322 3445555555555555555555555555


Q ss_pred             CC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChh
Q 038522          396 GD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAE  472 (590)
Q Consensus       396 ~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  472 (590)
                      .+   ++...+..+...+...|++++|...|+++.+.  .|+..++..+..++...|++++|.+.++.+.+.  .+.+..
T Consensus       696 ~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~  771 (899)
T TIGR02917       696 QKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAV  771 (899)
T ss_pred             HhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence            42   23334455555555555555555555555543  233344445555555555555555555555542  223344


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA  550 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  550 (590)
                      .+..+...|...|++++|.+.|+++  ..++++..+..+...+...|+ ++|+..++++++..|+++..+..++.+|...
T Consensus       772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  850 (899)
T TIGR02917       772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK  850 (899)
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence            5555555555555555555555555  223344455555555555555 5555555555555555555555555555555


Q ss_pred             CChHHHHHHHHHhhhcC
Q 038522          551 GAWDNARKTRKLMEERS  567 (590)
Q Consensus       551 g~~~~A~~~~~~~~~~~  567 (590)
                      |++++|.++++++.+.+
T Consensus       851 g~~~~A~~~~~~a~~~~  867 (899)
T TIGR02917       851 GEADRALPLLRKAVNIA  867 (899)
T ss_pred             CCHHHHHHHHHHHHhhC
Confidence            55555555555555544

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=3.2e-35  Score=321.48  Aligned_cols=551  Identities=13%  Similarity=0.045  Sum_probs=448.5

Q ss_pred             ccccccccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCh
Q 038522            3 IVRANFKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDV   81 (590)
Q Consensus         3 l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~   81 (590)
                      +...+.+.|++++|+..++.+ ...+.+...+..+...+.+.|++++|.+.|+.+.+.. +.+...+..+...+...|++
T Consensus       335 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  413 (899)
T TIGR02917       335 LASIQLRLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDP  413 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCCh
Confidence            345677889999999999888 5555567788888888889999999999999888765 45677788888888889999


Q ss_pred             HHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522           82 LSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ  158 (590)
Q Consensus        82 ~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  158 (590)
                      ++|.+.|+.+.+   .+...+..++..+.+.|++++|.++++.+.+. .+++..++..+...+...|++++|...++.+.
T Consensus       414 ~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  492 (899)
T TIGR02917       414 SEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKAL  492 (899)
T ss_pred             HHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999998888765   23345666778888999999999999988764 45567788888888889999999999999888


Q ss_pred             hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH
Q 038522          159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL  235 (590)
Q Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  235 (590)
                      +.. +.+...+..+...+...|++++|.+.|+++.+   .+..++..+...+.+.|+.++|...++++...+ +.+...+
T Consensus       493 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  570 (899)
T TIGR02917       493 SIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPA  570 (899)
T ss_pred             hhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHH
Confidence            764 44556777788888999999999999988764   356678888888889999999999999887764 4456677


Q ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC---CCccchHHHHHHHHhcC
Q 038522          236 GSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK---TDIISCTALISGFARDD  312 (590)
Q Consensus       236 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~  312 (590)
                      ..+...+...|++++|..+++.+.+.. +.+..++..+..++...|++++|...|+.+.+   .+...+..+...+...+
T Consensus       571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  649 (899)
T TIGR02917       571 LALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMK  649 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence            778888889999999999999887654 56677888889999999999999999988743   34556777888888888


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHH
Q 038522          313 NHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAF  392 (590)
Q Consensus       313 ~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  392 (590)
                      + +++|...++++.+.. +.+..++..+...+...|+++.|..+++.+.+..+ .+...+..+...+.+.|++++|...|
T Consensus       650 ~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~  726 (899)
T TIGR02917       650 N-YAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAY  726 (899)
T ss_pred             C-HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHH
Confidence            8 999999999888653 44567788888888899999999999998887764 36667778888888999999999999


Q ss_pred             HhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC
Q 038522          393 DEMG--DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR  470 (590)
Q Consensus       393 ~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  470 (590)
                      +.+.  .|+..++..+...+.+.|++++|.+.++++.+. .+.+...+..+...|...|++++|.+.|+++.+.  .+++
T Consensus       727 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~  803 (899)
T TIGR02917       727 RKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK--APDN  803 (899)
T ss_pred             HHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh--CCCC
Confidence            8876  355567777888889999999999999998875 2456778888888888899999999999999864  2456


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      ...+..+...+...|+ .+|+++++++ ...| ++..+..+...+...|++++|...++++++.+|.++.++..++.+|.
T Consensus       804 ~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~  882 (899)
T TIGR02917       804 AVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALL  882 (899)
T ss_pred             HHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence            7788888888999998 7899999887 4444 45567788888888999999999999999999988999999999999


Q ss_pred             hcCChHHHHHHHHHhhh
Q 038522          549 AAGAWDNARKTRKLMEE  565 (590)
Q Consensus       549 ~~g~~~~A~~~~~~~~~  565 (590)
                      ..|++++|.+++++|.+
T Consensus       883 ~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       883 ATGRKAEARKELDKLLN  899 (899)
T ss_pred             HcCCHHHHHHHHHHHhC
Confidence            99999999999988753

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.98  E-value=1.3e-26  Score=253.36  Aligned_cols=547  Identities=11%  Similarity=0.043  Sum_probs=368.8

Q ss_pred             cccccccCChHHHHHHhhhCCCCCCCcccH-----------------HHHHHHhhcccchhHHHHHHHHHHHhcCCCchh
Q 038522            4 VRANFKTGQLKQALKFSLSCPDTLLDPSTY-----------------MSLLQFCIDKKAERQAHLIHAHIITNGYESNLH   66 (590)
Q Consensus         4 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~   66 (590)
                      ++.+.+.|+.++|.+.++++....|+...+                 ..+.+.+...|++++|.+.++.+.+.+ +|+..
T Consensus        69 ~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~  147 (1157)
T PRK11447         69 FRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELD  147 (1157)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChH
Confidence            455677788888888888883333433222                 233445677788888888888877654 33332


Q ss_pred             H-HHHHHHHHHhcCChHHHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCC---------------
Q 038522           67 L-STKVIIFYAKVGDVLSARKAFDRMPE--R-NVVSWTAMISGYAQNGYDENALLVFSAMLRSGV---------------  127 (590)
Q Consensus        67 ~-~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------------  127 (590)
                      . ...........|++++|++.|+++.+  | +...+..+...+...|+.++|+..++++.+...               
T Consensus       148 la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~  227 (1157)
T PRK11447        148 LAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKD  227 (1157)
T ss_pred             HHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence            1 11112222345778888888887765  3 344566777777778888888888877654210               


Q ss_pred             ---C--------------CCHhhH---------------------HHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHH
Q 038522          128 ---R--------------ANQFTY---------------------SSALRACARMRWLQGGRMIQGSIQKGRFVENLFVK  169 (590)
Q Consensus       128 ---~--------------p~~~~~---------------------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  169 (590)
                         .              |+....                     ......+...|++++|...++..++.. +.+..++
T Consensus       228 ~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~  306 (1157)
T PRK11447        228 MPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEAL  306 (1157)
T ss_pred             cCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence               0              100000                     011122445677777777777777653 3356667


Q ss_pred             HHHHHHHHhcCChHHHHHHHhccCC--CCc---chHHH------------HHHHHHhcCCchHHHHHHHHHHHcCCCCCh
Q 038522          170 SALLDLYAKCGWIEDAWILFERIER--KDV---VSWNA------------MIGGLAMQGFNDDSFWLFRSMMRQGMKPDC  232 (590)
Q Consensus       170 ~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~~------------li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  232 (590)
                      ..+..+|.+.|++++|+..|++..+  |+.   ..|..            ....+.+.|++++|...|++..... +.+.
T Consensus       307 ~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~  385 (1157)
T PRK11447        307 GALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDS  385 (1157)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCH
Confidence            7777777777777777777776654  221   11211            1334566777777777777777653 2344


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCC------------ccc
Q 038522          233 FTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTD------------IIS  300 (590)
Q Consensus       233 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------------~~~  300 (590)
                      ..+..+...+...|++++|.+.|+++.+.. +.+...+..+...|. .++.++|..+++.+....            ...
T Consensus       386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~  463 (1157)
T PRK11447        386 YAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDR  463 (1157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhH
Confidence            555566667777777777777777777654 333445555555553 346677777776653221            112


Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHH
Q 038522          301 CTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYA  380 (590)
Q Consensus       301 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  380 (590)
                      +..+...+...++ +++|+..|++.++.. +-+...+..+...+...|++++|...++.+.+..+. ++..+..+...+.
T Consensus       464 ~~~~a~~~~~~g~-~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~  540 (1157)
T PRK11447        464 LAQQAEALENQGK-WAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLS  540 (1157)
T ss_pred             HHHHHHHHHHCCC-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence            3344556667788 899999999888653 224455667777888899999999999988875543 3444444555667


Q ss_pred             hcCChHHHHHHHHhcCCCC----c---------chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522          381 KSGEIADANRAFDEMGDKN----V---------ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH  447 (590)
Q Consensus       381 ~~~~~~~A~~~~~~~~~~~----~---------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  447 (590)
                      ..++.++|...++.+....    .         ..+..+...+...|+.++|..+++.     .+++...+..+...+.+
T Consensus       541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~  615 (1157)
T PRK11447        541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQ  615 (1157)
T ss_pred             hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHH
Confidence            7889999999998876321    1         1123445677889999999998872     24466677788889999


Q ss_pred             cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHH
Q 038522          448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELA  525 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~  525 (590)
                      .|++++|+..|+++.+.  .+.+...+..++..|...|++++|++.++.. ...| +...+..+..++...|++++|.+.
T Consensus       616 ~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~  693 (1157)
T PRK11447        616 RGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRT  693 (1157)
T ss_pred             cCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999999999964  2335788899999999999999999999988 4455 455677788888899999999999


Q ss_pred             HHHHhcCCCCCc------chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          526 ARNLFDMEPEKS------VNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       526 ~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +++++...|+++      ..+..++.++...|++++|++.+++...
T Consensus       694 ~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        694 FNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             HHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999998876544      3566789999999999999999999875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.97  E-value=5.8e-26  Score=248.16  Aligned_cols=557  Identities=10%  Similarity=0.026  Sum_probs=400.8

Q ss_pred             cccccccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHH--------------
Q 038522            4 VRANFKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLS--------------   68 (590)
Q Consensus         4 ~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------------   68 (590)
                      ++.+...++.+.|...++++ ...+.++..+..+++.+.+.|+.++|.+.++.+.+.. +.+....              
T Consensus        35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~~~~~~  113 (1157)
T PRK11447         35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLSTPEGR  113 (1157)
T ss_pred             HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhcCCchh
Confidence            45567789999999999999 5555577788999999999999999999999999986 3343332              


Q ss_pred             --HHHHHHHHhcCChHHHHHHhccCCCCCccchH----HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh
Q 038522           69 --TKVIIFYAKVGDVLSARKAFDRMPERNVVSWT----AMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACA  142 (590)
Q Consensus        69 --~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  142 (590)
                        ..+...+.+.|++++|...|+.+.+.+.....    .........|+.++|++.|+++.+.. +-+...+..+...+.
T Consensus       114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~  192 (1157)
T PRK11447        114 QALQQARLLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLF  192 (1157)
T ss_pred             hHHHHHHHHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence              23345688899999999999998763222211    11122234589999999999999863 335556677777788


Q ss_pred             ccCchhhHHHHHHHHHhcCC------------------C--------------CchHH---------------------H
Q 038522          143 RMRWLQGGRMIQGSIQKGRF------------------V--------------ENLFV---------------------K  169 (590)
Q Consensus       143 ~~~~~~~a~~~~~~~~~~~~------------------~--------------~~~~~---------------------~  169 (590)
                      ..|+.++|...++.+.+...                  .              |+...                     .
T Consensus       193 ~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~  272 (1157)
T PRK11447        193 SSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRA  272 (1157)
T ss_pred             ccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHH
Confidence            89999999999988765321                  0              10000                     0


Q ss_pred             HHHHHHHHhcCChHHHHHHHhccCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-hhhH----------
Q 038522          170 SALLDLYAKCGWIEDAWILFERIER--K-DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD-CFTL----------  235 (590)
Q Consensus       170 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~----------  235 (590)
                      ......+...|++++|...|++..+  | +...+..+..++.+.|++++|+..|++..+...... ...+          
T Consensus       273 ~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~  352 (1157)
T PRK11447        273 RAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYW  352 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHH
Confidence            0123455667888888888877754  3 556777788888888888888888888776532111 1111          


Q ss_pred             --HHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC--C-CccchHHHHHHHHh
Q 038522          236 --GSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--T-DIISCTALISGFAR  310 (590)
Q Consensus       236 --~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~  310 (590)
                        ......+.+.|++++|...++++.+.. +.+...+..+..++...|++++|++.|+++..  | +...+..+...+. 
T Consensus       353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~-  430 (1157)
T PRK11447        353 LLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYR-  430 (1157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-
Confidence              112334567888888888888888764 34556667778888888888888888888753  2 2334444555543 


Q ss_pred             cCCChHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 038522          311 DDNHSKEAFDLFKDMILKKMG--------IDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS  382 (590)
Q Consensus       311 ~~~~~~~a~~~~~~~~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  382 (590)
                      .++ .++|..+++.+......        .....+......+...|++++|...++.+.+..+. ++..+..+...|.+.
T Consensus       431 ~~~-~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~  508 (1157)
T PRK11447        431 QQS-PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQA  508 (1157)
T ss_pred             hcC-HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHc
Confidence            345 78888777665322100        01122344556677788999999999998887654 566777888889999


Q ss_pred             CChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHH---------HHHHHHHHhhccCC
Q 038522          383 GEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDV---------TFLSLLFACSHTGL  450 (590)
Q Consensus       383 ~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~~~  450 (590)
                      |++++|...++++.+  | +...+..+...+...+++++|+..++++......++..         .+..+...+...|+
T Consensus       509 G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~  588 (1157)
T PRK11447        509 GQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK  588 (1157)
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence            999999999988753  3 34445555556677888999999888765432222221         12344567788899


Q ss_pred             hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHH
Q 038522          451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARN  528 (590)
Q Consensus       451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~  528 (590)
                      .++|.++++.      .+++...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|++.+++
T Consensus       589 ~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~  662 (1157)
T PRK11447        589 EAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAK  662 (1157)
T ss_pred             HHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            9999998871      2445667778899999999999999999998 4445 577889999999999999999999999


Q ss_pred             HhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCC
Q 038522          529 LFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNP  572 (590)
Q Consensus       529 ~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  572 (590)
                      +.+..|+++..+..++.++...|++++|.++++.+.+......|
T Consensus       663 ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~  706 (1157)
T PRK11447        663 LPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP  706 (1157)
T ss_pred             HhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence            99999999999999999999999999999999999886544333

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=1.8e-23  Score=218.07  Aligned_cols=542  Identities=11%  Similarity=-0.005  Sum_probs=377.3

Q ss_pred             cccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 038522            8 FKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK   86 (590)
Q Consensus         8 ~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~   86 (590)
                      ...|++++|+..|+++ ...|-+..++..+.+++...|+.++|....++..+.. +.|...+..+ ..+   ++.++|..
T Consensus        55 ~~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld-P~n~~~~~~L-a~i---~~~~kA~~  129 (987)
T PRK09782         55 QKNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH-PGDARLERSL-AAI---PVEVKSVT  129 (987)
T ss_pred             HhCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-cccHHHHHHH-HHh---ccChhHHH
Confidence            3459999999999999 5455566788999999999999999999999999875 3445555444 222   88899999


Q ss_pred             HhccCCC--CC-ccchHHHHHH--------HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhccCchhhHHHHH
Q 038522           87 AFDRMPE--RN-VVSWTAMISG--------YAQNGYDENALLVFSAMLRSGVRANQFTYSSA-LRACARMRWLQGGRMIQ  154 (590)
Q Consensus        87 ~~~~~~~--~~-~~~~~~li~~--------~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~~~~~~~a~~~~  154 (590)
                      +++++..  |+ ..++..+...        |.+.   ++|.+.++ .......|+..+.... .+.+.+.+++++|..++
T Consensus       130 ~ye~l~~~~P~n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL  205 (987)
T PRK09782        130 TVEELLAQQKACDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLY  205 (987)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHH
Confidence            9999875  43 4455555554        5444   55555555 4333344455555555 88899999999999999


Q ss_pred             HHHHhcCCCCchHHHHHHHHHHHh-cCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-CCh
Q 038522          155 GSIQKGRFVENLFVKSALLDLYAK-CGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMK-PDC  232 (590)
Q Consensus       155 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~  232 (590)
                      ..+.+.+. .+......|..+|.. .++ +++..+++...+.+...+..++..+.+.|+.++|.++++++...-.. |..
T Consensus       206 ~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~  283 (987)
T PRK09782        206 NEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQGIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQE  283 (987)
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhchhcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCcc
Confidence            99999863 345556667778887 466 88888877655568888999999999999999999999987543211 222


Q ss_pred             hhHHHH------------------------------HHHhccCCChhHHHHHHH--------------------------
Q 038522          233 FTLGSI------------------------------LRASVGGIELMKISQIHD--------------------------  256 (590)
Q Consensus       233 ~~~~~l------------------------------l~~~~~~~~~~~a~~~~~--------------------------  256 (590)
                      .++..+                              +..+.+.++++.++++..                          
T Consensus       284 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~  363 (987)
T PRK09782        284 KSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALR  363 (987)
T ss_pred             HHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHH
Confidence            222221                              233334444444443321                          


Q ss_pred             ---HHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC--CCcc----chHHHHHHHHhcCC--ChHHHHHH----
Q 038522          257 ---LIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--TDII----SCTALISGFARDDN--HSKEAFDL----  321 (590)
Q Consensus       257 ---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~----~~~~l~~~~~~~~~--~~~~a~~~----  321 (590)
                         .+.+.. +-+.....-+.-...+.|+.++|.++|+....  ++..    ...-++..+.+.+.  ...++..+    
T Consensus       364 ~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~  442 (987)
T PRK09782        364 LARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPL  442 (987)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcccc
Confidence               111110 11222222333345567888889988888743  2221    22244455554432  01222222    


Q ss_pred             ------------------HHHHHH-cCCCC---CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 038522          322 ------------------FKDMIL-KKMGI---DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMY  379 (590)
Q Consensus       322 ------------------~~~~~~-~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  379 (590)
                                        +..... .+..|   +...+..+..++.. ++.++|...+.......+  +......+...+
T Consensus       443 ~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P--d~~~~L~lA~al  519 (987)
T PRK09782        443 PLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP--DAWQHRAVAYQA  519 (987)
T ss_pred             ccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC--chHHHHHHHHHH
Confidence                              111111 11223   34444445444444 788888887777776653  333344455556


Q ss_pred             HhcCChHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHH
Q 038522          380 AKSGEIADANRAFDEMGD--KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWEL  457 (590)
Q Consensus       380 ~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  457 (590)
                      ...|++++|...|+++..  |+...+..+...+.+.|++++|...+++..+.. +++...+..+.......|++++|...
T Consensus       520 ~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~  598 (987)
T PRK09782        520 YQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALND  598 (987)
T ss_pred             HHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHH
Confidence            789999999999998763  444566777788899999999999999998863 22333444444455567999999999


Q ss_pred             HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          458 FTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                      +++..+.   .|+...+..+..++.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++..|+
T Consensus       599 ~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~  675 (987)
T PRK09782        599 LTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPD  675 (987)
T ss_pred             HHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence            9999954   678888999999999999999999999998 5566 4567788888999999999999999999999999


Q ss_pred             CcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          536 KSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       536 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ++.++..++.++...|++++|+..+++..+..+
T Consensus       676 ~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        676 DPALIRQLAYVNQRLDDMAATQHYARLVIDDID  708 (987)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999887553

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.94  E-value=1.3e-21  Score=204.32  Aligned_cols=543  Identities=9%  Similarity=-0.053  Sum_probs=392.6

Q ss_pred             cccccccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHH-------
Q 038522            2 NIVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIF-------   74 (590)
Q Consensus         2 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-------   74 (590)
                      .|.+.|...|++++|+..++++....|+-..|..++...   ++.++|..+++++.+.. +.+..++..+...       
T Consensus        83 ~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la~~~~~~~~l  158 (987)
T PRK09782         83 YLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRCRSEVGQNAL  158 (987)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHHHHhhccchh
Confidence            467889999999999999999944455544454444333   88999999999999986 4566677666666       


Q ss_pred             -HHhcCChHHHHHHhccCCCCC--ccchHHH-HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc-cCchhh
Q 038522           75 -YAKVGDVLSARKAFDRMPERN--VVSWTAM-ISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACAR-MRWLQG  149 (590)
Q Consensus        75 -~~~~g~~~~a~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~-~~~~~~  149 (590)
                       |.+.++..++++  .....|+  ..+.... .+.|.+.|++++|++.+.++.+.+. .+..-...+-.++.. .++ +.
T Consensus       159 ~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~  234 (987)
T PRK09782        159 RLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DR  234 (987)
T ss_pred             hhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HH
Confidence             777766666666  3333343  4434444 8899999999999999999999763 334445555566666 356 66


Q ss_pred             HHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC-----CCcch-------------------------
Q 038522          150 GRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER-----KDVVS-------------------------  199 (590)
Q Consensus       150 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~-------------------------  199 (590)
                      +..++..    .+..+......+.+.|.+.|+.++|.+++++++.     |+..+                         
T Consensus       235 a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~  310 (987)
T PRK09782        235 LLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD  310 (987)
T ss_pred             HHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHH
Confidence            6666442    3446888999999999999999999999998863     11111                         


Q ss_pred             -----HHHHHHHHHhcCCchHHHHHHH-----------------------------HHHHcCCCCChhhHHHHHHHhccC
Q 038522          200 -----WNAMIGGLAMQGFNDDSFWLFR-----------------------------SMMRQGMKPDCFTLGSILRASVGG  245 (590)
Q Consensus       200 -----~~~li~~~~~~~~~~~a~~~~~-----------------------------~m~~~~~~p~~~~~~~ll~~~~~~  245 (590)
                           .-.++..+.+.++++.+.++..                             .|... .+-+......+--...+.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~  389 (987)
T PRK09782        311 NRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQN  389 (987)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHc
Confidence                 1112455556666665554422                             11111 011222222333335578


Q ss_pred             CChhHHHHHHHHHHHh-C-CCCChhHHHHHHHHHHhcCC---hHHHHHH-------------------------HHhccC
Q 038522          246 IELMKISQIHDLIIKL-G-LESSNKLTGSLIDVYAKYGS---IRSAYQL-------------------------YRSMLK  295 (590)
Q Consensus       246 ~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~---~~~a~~~-------------------------~~~~~~  295 (590)
                      |+.++|.++++..... + ..++.....-++..|.+.+.   ..++..+                         +.....
T Consensus       390 ~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  469 (987)
T PRK09782        390 GQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLG  469 (987)
T ss_pred             ccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcc
Confidence            8899999999988763 1 23345556678888887766   3333333                         111111


Q ss_pred             ---C--CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchh
Q 038522          296 ---T--DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAA  370 (590)
Q Consensus       296 ---~--~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  370 (590)
                         +  +...|..+...+.. ++ .++|+..+.+....  .|+......+...+...|+++.|...++.+....  |+..
T Consensus       470 ~~p~~~~~~a~~~LG~~l~~-~~-~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~--p~~~  543 (987)
T PRK09782        470 DMSPSYDAAAWNRLAKCYRD-TL-PGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHD--MSNE  543 (987)
T ss_pred             cCCCCCCHHHHHHHHHHHHh-CC-cHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccC--CCcH
Confidence               1  34455666666655 66 88899988887765  4776554455556678999999999999876553  3334


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHH---HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522          371 VGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSL---IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH  447 (590)
Q Consensus       371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  447 (590)
                      .+..+...+.+.|++++|...+++..+.++...+..   .......|++++|...+++..+.  .|+...+..+..++.+
T Consensus       544 a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~  621 (987)
T PRK09782        544 DLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQ  621 (987)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence            456677888999999999999998876444333333   33444559999999999999975  6788889999999999


Q ss_pred             cCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHH
Q 038522          448 TGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGEL  524 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~  524 (590)
                      .|++++|...+++....   .|+ ...+..+..++...|++++|++.+++. ...| ++..+..+..++...|+++.|+.
T Consensus       622 lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~  698 (987)
T PRK09782        622 RHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQH  698 (987)
T ss_pred             CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            99999999999999964   554 778888889999999999999999998 5555 56788999999999999999999


Q ss_pred             HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          525 AARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       525 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      .+++++++.|++..+....++......+++.|.+-++..-.-++
T Consensus       699 ~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~  742 (987)
T PRK09782        699 YARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF  742 (987)
T ss_pred             HHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence            99999999999999999999999999999999998887655443

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.92  E-value=5.5e-21  Score=177.50  Aligned_cols=442  Identities=16%  Similarity=0.120  Sum_probs=343.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 038522          100 TAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKC  179 (590)
Q Consensus       100 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  179 (590)
                      ..|..-..+.|++++|.+.-...-... +.+..+.-.+-..+.+..+++...+.-....+. .+.-..+|..+.+.+-..
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ker  129 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKER  129 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHHh
Confidence            344455556777777777655543332 111111111222234444444444433333333 234566888888888888


Q ss_pred             CChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHH-HHHHhccCCChhHHHHHH
Q 038522          180 GWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGS-ILRASVGGIELMKISQIH  255 (590)
Q Consensus       180 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~  255 (590)
                      |++++|+.+++.+.+   ..+..|..+..++...|+.+.|.+.|.+..+.  .|+.....+ +...+...|++++|..-+
T Consensus       130 g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cY  207 (966)
T KOG4626|consen  130 GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACY  207 (966)
T ss_pred             chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHH
Confidence            999999988888765   24677888889999999999999999888764  566555443 334445578888888888


Q ss_pred             HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc---cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCC
Q 038522          256 DLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI---ISCTALISGFARDDNHSKEAFDLFKDMILKKMGI  332 (590)
Q Consensus       256 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p  332 (590)
                      .+.++.. +-=...|+.|...+-..|+...|+.-|++..+-|+   ..|-.|...|-..+. +++|+..+.+....  .|
T Consensus       208 lkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~-~d~Avs~Y~rAl~l--rp  283 (966)
T KOG4626|consen  208 LKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI-FDRAVSCYLRALNL--RP  283 (966)
T ss_pred             HHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc-chHHHHHHHHHHhc--CC
Confidence            8877654 23345678888889999999999999999865443   467778888888888 99999999887754  55


Q ss_pred             CH-HHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHH
Q 038522          333 DD-VILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIA  408 (590)
Q Consensus       333 ~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~  408 (590)
                      +. ..+..+...|...|.++.|+..+++.++..+. -+..|+.+..++-..|++.+|.+.|.+...  | ...+.+.|..
T Consensus       284 n~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgn  362 (966)
T KOG4626|consen  284 NHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGN  362 (966)
T ss_pred             cchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHH
Confidence            54 55667777788899999999999999887654 477889999999999999999999998874  3 4468889999


Q ss_pred             HHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCC
Q 038522          409 GYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQ  486 (590)
Q Consensus       409 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  486 (590)
                      .+...|.+++|..+|....+  +.|. ...++.|...|-..|++++|+.-+++..   .++|+ ...++.+...|...|+
T Consensus       363 i~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  363 IYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGD  437 (966)
T ss_pred             HHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhh
Confidence            99999999999999999887  5675 4578889999999999999999999999   67888 6789999999999999


Q ss_pred             hHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 038522          487 LESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDN  555 (590)
Q Consensus       487 ~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  555 (590)
                      ...|.+.+.++ .+.|. ...++.|...|...|+++.|++.|+.++++.|+.+.+|-.++.++---.+|.+
T Consensus       438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D  508 (966)
T KOG4626|consen  438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD  508 (966)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence            99999999998 77775 46789999999999999999999999999999999999999988777666666

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=1.2e-20  Score=175.25  Aligned_cols=421  Identities=15%  Similarity=0.122  Sum_probs=339.2

Q ss_pred             HHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcC
Q 038522          135 SSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQG  211 (590)
Q Consensus       135 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~  211 (590)
                      ..+..-..+.|++.+|++.-...-..+ +.+......+-..+....+.+.....-....+   .-..+|+.+...+-..|
T Consensus        52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg  130 (966)
T KOG4626|consen   52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERG  130 (966)
T ss_pred             HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhc
Confidence            344455667889999988776665543 23333334444556666666654433322222   24568999999999999


Q ss_pred             CchHHHHHHHHHHHcCCCC-ChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHH
Q 038522          212 FNDDSFWLFRSMMRQGMKP-DCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKL-TGSLIDVYAKYGSIRSAYQL  289 (590)
Q Consensus       212 ~~~~a~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~  289 (590)
                      +.++|+.+++.+.+.  +| ....|..+..++...|+.+.|.+.|.+.++.  .|+... .+.+...+...|++.+|...
T Consensus       131 ~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  131 QLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             hHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence            999999999999986  45 5678899999999999999999999998875  344433 33345556668999999998


Q ss_pred             HHhccCCC---ccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhchhhhHhHHHHHHHHHHhCC
Q 038522          290 YRSMLKTD---IISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICANVASLNLGRQIHAFAFKYQS  365 (590)
Q Consensus       290 ~~~~~~~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  365 (590)
                      +.+.++.+   ...|+.|...+-.+|+ ...|+..|++.+..  .|+- ..|..+-..+...+.++.|...+..+....+
T Consensus       207 YlkAi~~qp~fAiawsnLg~~f~~~Ge-i~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp  283 (966)
T KOG4626|consen  207 YLKAIETQPCFAIAWSNLGCVFNAQGE-IWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP  283 (966)
T ss_pred             HHHHHhhCCceeeeehhcchHHhhcch-HHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence            88875433   4679999999999999 99999999998854  4543 5677778888888888888888887776553


Q ss_pred             CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHHH
Q 038522          366 SYDAAVGNALIDMYAKSGEIADANRAFDEMGD--KN-VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLSL  441 (590)
Q Consensus       366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l  441 (590)
                      . ....+..+...|-..|.+|-|+..|++..+  |+ +..|+.|..++...|+..+|...|.+....  .|+ ....+.|
T Consensus       284 n-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NL  360 (966)
T KOG4626|consen  284 N-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNL  360 (966)
T ss_pred             c-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHH
Confidence            3 455666777788899999999999999874  54 358999999999999999999999999874  665 5678889


Q ss_pred             HHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-hHHHHHHHHHHhcCC
Q 038522          442 LFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA-SLWSAILGACSIYGN  518 (590)
Q Consensus       442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~  518 (590)
                      ...+...|.+++|..+|....   .+.|. ...++.|...|-.+|++++|+.-+++. .+.|+. .+++.+...|-..|+
T Consensus       361 gni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGD  437 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhh
Confidence            999999999999999999998   45676 668899999999999999999999998 888875 678999999999999


Q ss_pred             chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          519 TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       519 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      .+.|.+.+.+++..+|.-..++..|+.+|...|+..+|+.-+++..+..+.
T Consensus       438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPD  488 (966)
T KOG4626|consen  438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPD  488 (966)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCC
Confidence            999999999999999999999999999999999999999999998875543

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.89  E-value=4.6e-19  Score=182.40  Aligned_cols=418  Identities=10%  Similarity=-0.036  Sum_probs=292.2

Q ss_pred             HHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcchHHHHHHHHHhc
Q 038522          134 YSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--K-DVVSWNAMIGGLAMQ  210 (590)
Q Consensus       134 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~  210 (590)
                      +......+.+.|+++.|...|+..++.  .|+...|..+..+|.+.|++++|.+.++...+  | +...|..+..++...
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence            445556677888999999999888875  46677888888889999999999988888765  2 445777788888899


Q ss_pred             CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 038522          211 GFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLY  290 (590)
Q Consensus       211 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  290 (590)
                      |++++|+..|......+- .+......++..+..    ..+........+.. +++...+..+.. |...........-+
T Consensus       208 g~~~eA~~~~~~~~~~~~-~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~  280 (615)
T TIGR00990       208 GKYADALLDLTASCIIDG-FRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL  280 (615)
T ss_pred             CCHHHHHHHHHHHHHhCC-CccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence            999999888876654321 111111122211111    12222222222222 222222222222 22221111121112


Q ss_pred             HhccCCCc---cchHHHHHHH---HhcCCChHHHHHHHHHHHHcC-CCCC-HHHHHHHHHHHhchhhhHhHHHHHHHHHH
Q 038522          291 RSMLKTDI---ISCTALISGF---ARDDNHSKEAFDLFKDMILKK-MGID-DVILCLMLNICANVASLNLGRQIHAFAFK  362 (590)
Q Consensus       291 ~~~~~~~~---~~~~~l~~~~---~~~~~~~~~a~~~~~~~~~~~-~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  362 (590)
                      ....+.+.   ..+..+....   ...+. +++|...|++..+.+ ..|+ ...+..+...+...|+++.|...++...+
T Consensus       281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~-y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~  359 (615)
T TIGR00990       281 EDSNELDEETGNGQLQLGLKSPESKADES-YEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE  359 (615)
T ss_pred             hcccccccccccchHHHHHHHHHhhhhhh-HHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            22111111   1111111111   12345 899999999998765 3343 34566667777889999999999999988


Q ss_pred             hCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHH
Q 038522          363 YQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTF  438 (590)
Q Consensus       363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~  438 (590)
                      ..+. ....|..+...+...|++++|...|+++.+   .+...|..+...+...|++++|+..|++..+.  .| +...+
T Consensus       360 l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~  436 (615)
T TIGR00990       360 LDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSH  436 (615)
T ss_pred             cCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHH
Confidence            7543 456778888899999999999999998763   35678888999999999999999999999985  45 56677


Q ss_pred             HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-hH-------HHHH
Q 038522          439 LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA-SL-------WSAI  509 (590)
Q Consensus       439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~-------~~~l  509 (590)
                      ..+...+.+.|++++|+..+++..+.  .+.+...++.+..++...|++++|++.|++. .+.|+. ..       ++..
T Consensus       437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a  514 (615)
T TIGR00990       437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKA  514 (615)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHH
Confidence            78888899999999999999999864  2335788899999999999999999999997 444431 11       1112


Q ss_pred             HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      ...+...|++++|++.++++++++|++..++..++.++...|++++|++++++..+.
T Consensus       515 ~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l  571 (615)
T TIGR00990       515 LALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL  571 (615)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            223344699999999999999999999999999999999999999999999998764

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.89  E-value=1.7e-18  Score=169.60  Aligned_cols=550  Identities=12%  Similarity=0.071  Sum_probs=380.8

Q ss_pred             cccCChHHHHHHhhhC----CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChH-
Q 038522            8 FKTGQLKQALKFSLSC----PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVL-   82 (590)
Q Consensus         8 ~~~g~~~~a~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~-   82 (590)
                      ...|++..|+.+|.++    +..+||+..  .+..++.+.++.+.|...|....+.++ .++.++..|...-....+.+ 
T Consensus       175 ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s  251 (1018)
T KOG2002|consen  175 YNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDP-TCVSALVALGEVDLNFNDSDS  251 (1018)
T ss_pred             hccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcCh-hhHHHHHHHHHHHHHccchHH
Confidence            3457788888888886    445555432  333566677888888888888877752 34444444444333333333 


Q ss_pred             --HHHHHhccCC---CCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCC--CCHhhHHHHHHHHhccCchhhHHHHHH
Q 038522           83 --SARKAFDRMP---ERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVR--ANQFTYSSALRACARMRWLQGGRMIQG  155 (590)
Q Consensus        83 --~a~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~  155 (590)
                        .+..++...-   ..|+...+.|.+.|.-.|++..++++...+......  .-...|-.+.+++-..|+++.|...|.
T Consensus       252 ~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~  331 (1018)
T KOG2002|consen  252 YKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM  331 (1018)
T ss_pred             HHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence              3333333322   257788888999999999999999999888765311  223457778888999999999999998


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcchHHHHHHHHHhcC----CchHHHHHHHHHHHcCC
Q 038522          156 SIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--K-DVVSWNAMIGGLAMQG----FNDDSFWLFRSMMRQGM  228 (590)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~~~~~  228 (590)
                      ...+.....-...+--|...|.+.|+.+.+...|+.+.+  | +..+...|...|...+    ..+.|..++.+....- 
T Consensus       332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-  410 (1018)
T KOG2002|consen  332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-  410 (1018)
T ss_pred             HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-
Confidence            887764222233445678899999999999999998875  3 3344555555555554    4566777776666542 


Q ss_pred             CCChhhHHHHHHHhccCCChhHHHHHHHHH----HHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC-------CC
Q 038522          229 KPDCFTLGSILRASVGGIELMKISQIHDLI----IKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK-------TD  297 (590)
Q Consensus       229 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-------~~  297 (590)
                      +.|...|..+-..+....-+ ....++..+    ...+.++.+...|.+...+...|++..|...|+....       ++
T Consensus       411 ~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~d  489 (1018)
T KOG2002|consen  411 PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKD  489 (1018)
T ss_pred             cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCcc
Confidence            44566666666655544433 336655544    4556678888999999999999999999999988732       12


Q ss_pred             cc------chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchh
Q 038522          298 II------SCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDV-ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAA  370 (590)
Q Consensus       298 ~~------~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  370 (590)
                      ..      +-..+...+-..++ ++.|.+.|+.+...  .|.-+ .|..+.......++..+|...++....... .++.
T Consensus       490 e~~~~~lt~~YNlarl~E~l~~-~~~A~e~Yk~Ilke--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~  565 (1018)
T KOG2002|consen  490 EGKSTNLTLKYNLARLLEELHD-TEVAEEMYKSILKE--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPN  565 (1018)
T ss_pred             ccccchhHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcH
Confidence            21      11122233334445 88999999999876  45433 333333223344677788888877776543 2555


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHHHHHHHh------------cCCchHHHHHHHHHHHcCCCC
Q 038522          371 VGNALIDMYAKSGEIADANRAFDEMGD-----KNVISWTSLIAGYAK------------HGYGHEAIELYKKMKHEGMVP  433 (590)
Q Consensus       371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~------------~~~~~~a~~~~~~m~~~g~~p  433 (590)
                      ....+...|.+...+..|..-|+.+.+     +|+.+.-+|...+.+            .+..++|+++|.+.++. -+-
T Consensus       566 arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~-dpk  644 (1018)
T KOG2002|consen  566 ARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRN-DPK  644 (1018)
T ss_pred             HHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhc-Ccc
Confidence            556677788888888888886666542     344444445554432            23567889999988875 233


Q ss_pred             cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc----CCCCCHhHHHHH
Q 038522          434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM----NIKPTASLWSAI  509 (590)
Q Consensus       434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l  509 (590)
                      |...-+.+.-.++..|++.+|..+|..+.+..  .-...+|-.+..+|..+|++..|+++|+..    .-..+......|
T Consensus       645 N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~--~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~L  722 (1018)
T KOG2002|consen  645 NMYAANGIGIVLAEKGRFSEARDIFSQVREAT--SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYL  722 (1018)
T ss_pred             hhhhccchhhhhhhccCchHHHHHHHHHHHHH--hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHH
Confidence            77777888888899999999999999999862  234567888999999999999999999987    334477788999


Q ss_pred             HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-------------------CChHHHHHHHHHhhhcCCc
Q 038522          510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA-------------------GAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------------------g~~~~A~~~~~~~~~~~~~  569 (590)
                      .+++...|++.+|.+.+..+..+.|.++.....++.+..+.                   +..++|.++|.++...+-+
T Consensus       723 ara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  723 ARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999999999999998887776665433                   4567788888888876654

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=1.7e-19  Score=176.44  Aligned_cols=233  Identities=13%  Similarity=0.106  Sum_probs=171.6

Q ss_pred             HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC--Cc------chHHHHHH
Q 038522          337 LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK--NV------ISWTSLIA  408 (590)
Q Consensus       337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~------~~~~~l~~  408 (590)
                      +..+...+...|+++.|..++..+.+.. +.+..+++.++.++.+.|++++|.+.++.+.+.  +.      ..+..+..
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~  188 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQ  188 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH
Confidence            3344444445555555555555554432 224455666666777777777777777766531  11      13455677


Q ss_pred             HHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCC
Q 038522          409 GYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLFARRGQ  486 (590)
Q Consensus       409 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~  486 (590)
                      .+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.++++++.+.   .|+  ..++..++.+|...|+
T Consensus       189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~  264 (389)
T PRK11788        189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGD  264 (389)
T ss_pred             HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCC
Confidence            7788899999999999988752 234567777888899999999999999999864   343  4567888999999999


Q ss_pred             hHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh---cCChHHHHHHHHH
Q 038522          487 LESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA---AGAWDNARKTRKL  562 (590)
Q Consensus       487 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~  562 (590)
                      +++|.+.++++ ...|+...+..++..+.+.|++++|...++++++..|+++ .+..+...+..   .|+.++|..++++
T Consensus       265 ~~~A~~~l~~~~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~  343 (389)
T PRK11788        265 EAEGLEFLRRALEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRD  343 (389)
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHH
Confidence            99999999998 5677777778888999999999999999999999999655 55555554443   5699999999999


Q ss_pred             hhhcCCccCCCce
Q 038522          563 MEERSLRKNPGYS  575 (590)
Q Consensus       563 ~~~~~~~~~~~~~  575 (590)
                      +.+++++++|.+.
T Consensus       344 ~~~~~~~~~p~~~  356 (389)
T PRK11788        344 LVGEQLKRKPRYR  356 (389)
T ss_pred             HHHHHHhCCCCEE
Confidence            9999998888743

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.87  E-value=2.2e-17  Score=161.90  Aligned_cols=548  Identities=11%  Similarity=0.036  Sum_probs=374.3

Q ss_pred             hHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccC
Q 038522           13 LKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRM   91 (590)
Q Consensus        13 ~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~   91 (590)
                      .+.|...|... ...+++.-.+.--.......+++..|..+|..++...+..-+...-.+...+.+.|+.+.|...|...
T Consensus       146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ra  225 (1018)
T KOG2002|consen  146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERA  225 (1018)
T ss_pred             HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHH
Confidence            57777777777 55555554444444555567789999999998766544333333344556777889999999999888


Q ss_pred             CCCCccchHHHHHHH---HhcC---ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCC--
Q 038522           92 PERNVVSWTAMISGY---AQNG---YDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFV--  163 (590)
Q Consensus        92 ~~~~~~~~~~li~~~---~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--  163 (590)
                      .+-|+..-++++...   ....   .+..+...+...-... .-++...+.|-+.+.-.|++..+..+.+.+......  
T Consensus       226 lqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~  304 (1018)
T KOG2002|consen  226 LQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS  304 (1018)
T ss_pred             HhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH
Confidence            875554444433221   2222   3344555555544322 245566777778888889999999998888775421  


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHhccCC--CC--cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH
Q 038522          164 ENLFVKSALLDLYAKCGWIEDAWILFERIER--KD--VVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSIL  239 (590)
Q Consensus       164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  239 (590)
                      .-...|-.+.++|-..|++++|...|....+  ++  +..+--+...+...|+.+.+...|+...... +-+..|...+.
T Consensus       305 ~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG  383 (1018)
T KOG2002|consen  305 IKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILG  383 (1018)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            2233566788889999999999998877664  22  2345557788899999999999999887762 44556666666


Q ss_pred             HHhccCC----ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--------cCCCccchHHHHHH
Q 038522          240 RASVGGI----ELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM--------LKTDIISCTALISG  307 (590)
Q Consensus       240 ~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~~~~~~l~~~  307 (590)
                      ..|...+    ..+.|..++....+.. +.|...|-.+...+....-+ .++..|...        ....+...|.+...
T Consensus       384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~-~sL~~~~~A~d~L~~~~~~ip~E~LNNvasl  461 (1018)
T KOG2002|consen  384 CLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPW-ASLDAYGNALDILESKGKQIPPEVLNNVASL  461 (1018)
T ss_pred             hHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChH-HHHHHHHHHHHHHHHcCCCCCHHHHHhHHHH
Confidence            6666554    4566666666665544 55667777676666554432 335544443        23456678888888


Q ss_pred             HHhcCCChHHHHHHHHHHHHc---CCCCCH-----HH-HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHH
Q 038522          308 FARDDNHSKEAFDLFKDMILK---KMGIDD-----VI-LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDM  378 (590)
Q Consensus       308 ~~~~~~~~~~a~~~~~~~~~~---~~~p~~-----~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  378 (590)
                      ....|. +.+|...|++....   ...+|.     .| --.+.......++.+.|.+.|..+.+..+. -+..|-.+..+
T Consensus       462 hf~~g~-~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~m  539 (1018)
T KOG2002|consen  462 HFRLGN-IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCM  539 (1018)
T ss_pred             HHHhcC-hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHH
Confidence            888888 99999999887654   223333     12 223344445667888999999988876543 22333333323


Q ss_pred             HHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCcHHHHHHHHHHhhc-------
Q 038522          379 YAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEG-MVPNDVTFLSLLFACSH-------  447 (590)
Q Consensus       379 ~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~-------  447 (590)
                      ....+...+|...+..+.   +.++..++.+...+.+...+..|.+-|....+.- ..+|..+...|.+.|..       
T Consensus       540 a~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~r  619 (1018)
T KOG2002|consen  540 ARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSR  619 (1018)
T ss_pred             HHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhccccc
Confidence            333467788888888776   3567778778878888888888888776665432 23566666666665543       


Q ss_pred             -----cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCch
Q 038522          448 -----TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTS  520 (590)
Q Consensus       448 -----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~  520 (590)
                           .+..++|+++|..+.+.  .+-|...-+.+.-.++..|++.+|..+|.+.  .......+|-.+...|...|++-
T Consensus       620 n~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~  697 (1018)
T KOG2002|consen  620 NPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYR  697 (1018)
T ss_pred             ChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHH
Confidence                 23456788888888753  3446777888888899999999999999988  22335667888999999999999


Q ss_pred             HHHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          521 LGELAARNLFDME-P-EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       521 ~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      .|++.|+..++.. | +++.....|++++.+.|++.+|.+.+.......+
T Consensus       698 ~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p  747 (1018)
T KOG2002|consen  698 LAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAP  747 (1018)
T ss_pred             HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            9999999998543 3 5778889999999999999999999887766444

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.87  E-value=2.2e-17  Score=173.05  Aligned_cols=390  Identities=9%  Similarity=-0.005  Sum_probs=203.0

Q ss_pred             HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchH
Q 038522          139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDD  215 (590)
Q Consensus       139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~  215 (590)
                      ......|+.++|.+++....... +.+...+..+...+...|++++|.++|++..+   .+...+..+...+...|++++
T Consensus        23 ~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~e  101 (765)
T PRK10049         23 QIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDE  101 (765)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            33334444444444444444311 22333445555555555555555555555322   223344455555566666666


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC
Q 038522          216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK  295 (590)
Q Consensus       216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  295 (590)
                      |+..+++..+.. +.+.. +..+...+...|+.+.|...++++.+.. +.+...+..+..++...|..+.|+..++....
T Consensus       102 A~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~  178 (765)
T PRK10049        102 ALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL  178 (765)
T ss_pred             HHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC
Confidence            666666665541 22233 4455555556666666666666666543 23344444556666666677777766666543


Q ss_pred             CCcc--------chHHHHHHHH-----hcCCCh---HHHHHHHHHHHHc-CCCCCHH-HHHHHHHHHhchhhhHhHHHHH
Q 038522          296 TDII--------SCTALISGFA-----RDDNHS---KEAFDLFKDMILK-KMGIDDV-ILCLMLNICANVASLNLGRQIH  357 (590)
Q Consensus       296 ~~~~--------~~~~l~~~~~-----~~~~~~---~~a~~~~~~~~~~-~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~  357 (590)
                       ++.        .....+....     ..++ +   ++|+..++.+.+. ...|+.. .+.                   
T Consensus       179 -~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r-~~~ad~Al~~~~~ll~~~~~~p~~~~~~~-------------------  237 (765)
T PRK10049        179 -TPAEKRDLEADAAAELVRLSFMPTRSEKER-YAIADRALAQYDALEALWHDNPDATADYQ-------------------  237 (765)
T ss_pred             -CHHHHHHHHHHHHHHHHHhhcccccChhHH-HHHHHHHHHHHHHHHhhcccCCccchHHH-------------------
Confidence             111        0011111110     0011 1   3445555554432 1112110 000                   


Q ss_pred             HHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC---cc-hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 038522          358 AFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN---VI-SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP  433 (590)
Q Consensus       358 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p  433 (590)
                                  ......+..+...|++++|+..|+.+.+.+   +. .-..+...+...|++++|+..|+++.+.  .|
T Consensus       238 ------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p  303 (765)
T PRK10049        238 ------------RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PE  303 (765)
T ss_pred             ------------HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CC
Confidence                        000011122334466666666666665321   11 1112345566666666666666666543  22


Q ss_pred             c-----HHHHHHHHHHhhccCChHHHHHHHHHHHhhcC----------CCCC---hhHHHHHHHHHHhcCChHHHHHHHH
Q 038522          434 N-----DVTFLSLLFACSHTGLTCEGWELFTDMINKYR----------ILPR---AEHFSCVVDLFARRGQLESAYNMIR  495 (590)
Q Consensus       434 ~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~  495 (590)
                      .     ......+..++...|++++|.+.++.+.+...          -.|+   ...+..+...+...|++++|++.++
T Consensus       304 ~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~  383 (765)
T PRK10049        304 TIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRAR  383 (765)
T ss_pred             CCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            1     22344444556666667777766666664310          0112   1233455566777777777777777


Q ss_pred             hc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          496 QM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       496 ~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      ++ ...| +...+..+...+...|++++|++.++++++.+|+++..+..++..+...|++++|..+++.+.+..
T Consensus       384 ~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~  457 (765)
T PRK10049        384 ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVARE  457 (765)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence            76 3233 455666777777777777777777777777777777777777777777777777777777776543

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.86  E-value=4e-19  Score=173.85  Aligned_cols=293  Identities=11%  Similarity=0.043  Sum_probs=191.6

Q ss_pred             HHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-CC------ccchHHHHHHHHhc
Q 038522           37 LQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE-RN------VVSWTAMISGYAQN  109 (590)
Q Consensus        37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~~------~~~~~~li~~~~~~  109 (590)
                      ...+...|++++|...|+.+.+.+ +.+..++..+...+...|++++|...++.+.. |+      ...+..+...|.+.
T Consensus        42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~  120 (389)
T PRK11788         42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA  120 (389)
T ss_pred             HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence            344556677888888888887764 44566777777788888888888887777654 21      13466777777888


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCch----HHHHHHHHHHHhcCChHHH
Q 038522          110 GYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENL----FVKSALLDLYAKCGWIEDA  185 (590)
Q Consensus       110 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A  185 (590)
                      |++++|..+|+++.+.. +++..++..+...+.+.|++++|...++.+.+.+..+..    ..+..+...+.+.|++++|
T Consensus       121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  199 (389)
T PRK11788        121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA  199 (389)
T ss_pred             CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence            88888888888877642 345667777777777888888888888877775433221    2344566666777777777


Q ss_pred             HHHHhccCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhC
Q 038522          186 WILFERIER--K-DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLG  262 (590)
Q Consensus       186 ~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  262 (590)
                      ...|+++.+  | +...+..+...+.+.|++++|.++++++...+......++..+..++...|+.++|...++.+.+..
T Consensus       200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  279 (389)
T PRK11788        200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY  279 (389)
T ss_pred             HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            777776653  2 3445666667777777777777777777655322223455666667777777777777777766653


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--CCCccchHHHHHHHHh---cCCChHHHHHHHHHHHHcCCCCCH
Q 038522          263 LESSNKLTGSLIDVYAKYGSIRSAYQLYRSML--KTDIISCTALISGFAR---DDNHSKEAFDLFKDMILKKMGIDD  334 (590)
Q Consensus       263 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~~~~~p~~  334 (590)
                        |+...+..++..+.+.|++++|..+++++.  .|+...++.++..+..   .|+ .++++.++++|.++++.|++
T Consensus       280 --p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~-~~~a~~~~~~~~~~~~~~~p  353 (389)
T PRK11788        280 --PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGR-AKESLLLLRDLVGEQLKRKP  353 (389)
T ss_pred             --CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCcc-chhHHHHHHHHHHHHHhCCC
Confidence              444445666666777777777777666653  3555555555555443   234 56666666666665555544

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.86  E-value=1.3e-17  Score=170.89  Aligned_cols=367  Identities=11%  Similarity=0.004  Sum_probs=264.7

Q ss_pred             HhcCChHHHHHHHhccCC------CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhH
Q 038522          177 AKCGWIEDAWILFERIER------KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMK  250 (590)
Q Consensus       177 ~~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~  250 (590)
                      .+..+|+.-.-+|..-.+      .+..-...++..+.+.|++++|..+++........ +...+..++.++...|+++.
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~   94 (656)
T PRK15174         16 LKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDA   94 (656)
T ss_pred             hhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHH
Confidence            345556555555554443      12233455667788889999999888888776433 23344445566667888889


Q ss_pred             HHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC--C-CccchHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038522          251 ISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--T-DIISCTALISGFARDDNHSKEAFDLFKDMIL  327 (590)
Q Consensus       251 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~  327 (590)
                      |...++.+.+.. +.+...+..+...+...|++++|...+++...  | +...+..+...+...|+ +++|...++.+..
T Consensus        95 A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~-~~eA~~~~~~~~~  172 (656)
T PRK15174         95 VLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDK-ELQAISLARTQAQ  172 (656)
T ss_pred             HHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCC-hHHHHHHHHHHHH
Confidence            998888888765 45566777788888888999999988888843  3 34567777888888888 8899988888765


Q ss_pred             cCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHH
Q 038522          328 KKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWT  404 (590)
Q Consensus       328 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~  404 (590)
                      ..  |+.......+..+...|++++|...++.+.+....++......+...+.+.|++++|...+++...   .+...+.
T Consensus       173 ~~--P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~  250 (656)
T PRK15174        173 EV--PPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRR  250 (656)
T ss_pred             hC--CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHH
Confidence            53  332222222334677888888888888877765444455555567788888999999999988764   2455777


Q ss_pred             HHHHHHHhcCCchH----HHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHH
Q 038522          405 SLIAGYAKHGYGHE----AIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVV  478 (590)
Q Consensus       405 ~l~~~~~~~~~~~~----a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~  478 (590)
                      .+...+...|++++    |...+++..+.  .| +...+..+...+...|++++|...+++....   .|+ ...+..+.
T Consensus       251 ~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La  325 (656)
T PRK15174        251 SLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYA  325 (656)
T ss_pred             HHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHH
Confidence            78888889998885    78899988875  45 5667888888899999999999999998864   444 56677788


Q ss_pred             HHHHhcCChHHHHHHHHhc-CCCCCHhH-HHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 038522          479 DLFARRGQLESAYNMIRQM-NIKPTASL-WSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA  556 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~~-~~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  556 (590)
                      .++.+.|++++|.+.++++ ...|+... +..+..++...|++++|...++++++..|++.            ...+++|
T Consensus       326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~~~ea  393 (656)
T PRK15174        326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQSFEEG  393 (656)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhhHHHH
Confidence            8899999999999999888 45665544 33456677888999999999999999988654            2344455


Q ss_pred             HHHHHHhhh
Q 038522          557 RKTRKLMEE  565 (590)
Q Consensus       557 ~~~~~~~~~  565 (590)
                      ...+....+
T Consensus       394 ~~~~~~~~~  402 (656)
T PRK15174        394 LLALDGQIS  402 (656)
T ss_pred             HHHHHHHHH
Confidence            555555544

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.85  E-value=7.9e-17  Score=165.90  Aligned_cols=419  Identities=11%  Similarity=-0.006  Sum_probs=285.3

Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 038522           99 WTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAK  178 (590)
Q Consensus        99 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  178 (590)
                      +......+.+.|++++|+..|++.++  +.|+...|..+..++.+.|+++.|...+...++.. +.+...+..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            44566778889999999999999887  56788888888888999999999999999988864 3456688889999999


Q ss_pred             cCChHHHHHHHhccCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHH
Q 038522          179 CGWIEDAWILFERIERKD---VVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIH  255 (590)
Q Consensus       179 ~~~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  255 (590)
                      .|++++|...|..+...+   ......++.....    ..+........+.. +++...+..+.. +...........-+
T Consensus       207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~  280 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGL  280 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhh
Confidence            999999988776554211   1111111111111    12222222222221 222222222211 11111111111111


Q ss_pred             HHHHHhCCCCCh-hHHHHHHHH---HHhcCChHHHHHHHHhccCC------CccchHHHHHHHHhcCCChHHHHHHHHHH
Q 038522          256 DLIIKLGLESSN-KLTGSLIDV---YAKYGSIRSAYQLYRSMLKT------DIISCTALISGFARDDNHSKEAFDLFKDM  325 (590)
Q Consensus       256 ~~~~~~~~~~~~-~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~  325 (590)
                      ....+  ..+.. ..+..+...   ....+++++|.+.|+.....      ....++.+...+...|+ +++|+..+++.
T Consensus       281 ~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~-~~eA~~~~~ka  357 (615)
T TIGR00990       281 EDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGK-HLEALADLSKS  357 (615)
T ss_pred             hcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCC-HHHHHHHHHHH
Confidence            11110  11111 111111111   12346788888888887532      23456667777778888 99999999988


Q ss_pred             HHcCCCCC-HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-Ccc
Q 038522          326 ILKKMGID-DVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVI  401 (590)
Q Consensus       326 ~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~  401 (590)
                      ++.  .|+ ...|..+...+...|+++.|...++.+.+..+. ++.++..+...+...|++++|...|++..+  | +..
T Consensus       358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~  434 (615)
T TIGR00990       358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIF  434 (615)
T ss_pred             HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHH
Confidence            765  444 456777777888889999999999988877543 577888899999999999999999998874  3 455


Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh-h-------
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA-E-------  472 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~-------  472 (590)
                      .+..+...+.+.|++++|+..+++..+.  .| +...+..+...+...|++++|++.|++....   .|+. .       
T Consensus       435 ~~~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~~~~~~  509 (615)
T TIGR00990       435 SHIQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMYMNVLP  509 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCccccccccHHH
Confidence            6777888999999999999999999875  45 5778888899999999999999999998853   3321 1       


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM-NIKPTA-SLWSAILGACSIYGNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      .++.....+...|++++|.+++++. ...|+. ..+..+...+...|++++|+..++++.++.+...
T Consensus       510 l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~  576 (615)
T TIGR00990       510 LINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEG  576 (615)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHH
Confidence            1122223344579999999999997 555644 5688899999999999999999999998887433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.84  E-value=3.1e-17  Score=168.16  Aligned_cols=329  Identities=12%  Similarity=-0.015  Sum_probs=267.4

Q ss_pred             hhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC--C-CccchHHHHHHH
Q 038522          232 CFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--T-DIISCTALISGF  308 (590)
Q Consensus       232 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~  308 (590)
                      ......++..+.+.|+.+.|..+++........+ ......++.+....|++++|...|+++..  | +...+..+...+
T Consensus        42 ~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l  120 (656)
T PRK15174         42 EQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL  120 (656)
T ss_pred             ccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence            3445567778889999999999999999876444 44455566777889999999999999943  3 445677788888


Q ss_pred             HhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHH
Q 038522          309 ARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADA  388 (590)
Q Consensus       309 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  388 (590)
                      ...|+ +++|...+++..... +.+...+..+...+...|+.+.|...+..+....+.+... +..+ ..+.+.|++++|
T Consensus       121 ~~~g~-~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a-~~~~-~~l~~~g~~~eA  196 (656)
T PRK15174        121 LKSKQ-YATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDM-IATC-LSFLNKSRLPED  196 (656)
T ss_pred             HHcCC-HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHH-HHHH-HHHHHcCCHHHH
Confidence            99999 999999999998752 3345667788889999999999999999887776554333 3333 347889999999


Q ss_pred             HHHHHhcCCC----CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHH----HHHHHHH
Q 038522          389 NRAFDEMGDK----NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCE----GWELFTD  460 (590)
Q Consensus       389 ~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~----a~~~~~~  460 (590)
                      ...++.+.+.    +...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++    |...+++
T Consensus       197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~  275 (656)
T PRK15174        197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRH  275 (656)
T ss_pred             HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHH
Confidence            9999997643    23344555678889999999999999999853 3357778888899999999986    8999999


Q ss_pred             HHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522          461 MINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       461 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      ..+.   .| +...+..+...+.+.|++++|+..+++. ...|+ ...+..+..++...|++++|+..++++.+..|.++
T Consensus       276 Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~  352 (656)
T PRK15174        276 ALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTS  352 (656)
T ss_pred             HHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccch
Confidence            9854   45 4778889999999999999999999998 44554 56677888999999999999999999999999887


Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          538 VNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      ..+..++.++...|++++|...+++..+..++
T Consensus       353 ~~~~~~a~al~~~G~~deA~~~l~~al~~~P~  384 (656)
T PRK15174        353 KWNRYAAAALLQAGKTSEAESVFEHYIQARAS  384 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence            77777889999999999999999998886654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.84  E-value=1.2e-15  Score=156.79  Aligned_cols=441  Identities=10%  Similarity=-0.012  Sum_probs=277.7

Q ss_pred             HHHHHhcCChHHHHHHhccCCC--CCcc-chHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH---HHHHHhccC
Q 038522           72 IIFYAKVGDVLSARKAFDRMPE--RNVV-SWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSS---ALRACARMR  145 (590)
Q Consensus        72 i~~~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~~  145 (590)
                      +-...+.|+++.|+..|++..+  |+.. ....++..+...|+.++|+..+++..    .|+...+..   +...+...|
T Consensus        41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~g  116 (822)
T PRK14574         41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEK  116 (822)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcC
Confidence            3345678888888888888765  4321 23377777778888888888888876    233222222   234566668


Q ss_pred             chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCc--chHHHHHHHHHhcCCchHHHHHHHHH
Q 038522          146 WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDV--VSWNAMIGGLAMQGFNDDSFWLFRSM  223 (590)
Q Consensus       146 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m  223 (590)
                      +++.|.++++.+.+.. +.+...+..++..+...++.++|++.++++...+.  ..+..++..+...++..+|++.++++
T Consensus       117 dyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekl  195 (822)
T PRK14574        117 RWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEA  195 (822)
T ss_pred             CHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence            8888888888887764 33355556667777777888888888777765333  33322222333344554577777777


Q ss_pred             HHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHH
Q 038522          224 MRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTA  303 (590)
Q Consensus       224 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  303 (590)
                      .+.+ +-+...+.....++.+.|-...|.++..+      .|+..+-......     +.+.|-+..+....++.. -  
T Consensus       196 l~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~-~--  260 (822)
T PRK14574        196 VRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS-E--  260 (822)
T ss_pred             HHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccccc-c--
Confidence            7663 22444455556666666666666555443      1221111111000     111122222111111000 0  


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHc-CCCCCH-HHH----HHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHH
Q 038522          304 LISGFARDDNHSKEAFDLFKDMILK-KMGIDD-VIL----CLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALID  377 (590)
Q Consensus       304 l~~~~~~~~~~~~~a~~~~~~~~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  377 (590)
                       -..+.   . .+.|+.-++.+... +-.|.. ..|    .-.+-++...+++..+...++.+...+.+....+-..+.+
T Consensus       261 -~~r~~---~-~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad  335 (822)
T PRK14574        261 -TERFD---I-ADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS  335 (822)
T ss_pred             -hhhHH---H-HHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence             00000   1 45666666666542 222322 222    2345577788889999999999988887766778888999


Q ss_pred             HHHhcCChHHHHHHHHhcCCCC---------cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC-----------CC--cH
Q 038522          378 MYAKSGEIADANRAFDEMGDKN---------VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM-----------VP--ND  435 (590)
Q Consensus       378 ~~~~~~~~~~A~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-----------~p--~~  435 (590)
                      +|...+++++|..+|.++..++         ......|.-++...+++++|..+++++.+.-.           .|  |-
T Consensus       336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~  415 (822)
T PRK14574        336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW  415 (822)
T ss_pred             HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence            9999999999999999875321         12246678888889999999999999887311           12  22


Q ss_pred             HH-HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHH
Q 038522          436 VT-FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGA  512 (590)
Q Consensus       436 ~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~  512 (590)
                      .. +..++..+...|++.+|++.++++...  -+-|......+.+.+...|.+.+|++.++.. ...|+ ..+....+.+
T Consensus       416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~  493 (822)
T PRK14574        416 IEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAET  493 (822)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHH
Confidence            22 334556677888889999988888753  3446778888888888889999998888776 55664 3455667777


Q ss_pred             HHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522          513 CSIYGNTSLGELAARNLFDMEPEKSVN  539 (590)
Q Consensus       513 ~~~~~~~~~a~~~~~~~~~~~p~~~~~  539 (590)
                      +...+++.+|..+.+.+.+..|+++..
T Consensus       494 al~l~e~~~A~~~~~~l~~~~Pe~~~~  520 (822)
T PRK14574        494 AMALQEWHQMELLTDDVISRSPEDIPS  520 (822)
T ss_pred             HHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence            778888888888888888888877644

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.83  E-value=2.8e-14  Score=134.30  Aligned_cols=471  Identities=10%  Similarity=-0.015  Sum_probs=363.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHH----HhcCCCCchHHHHHHHHHHH
Q 038522          102 MISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSI----QKGRFVENLFVKSALLDLYA  177 (590)
Q Consensus       102 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~l~~~~~  177 (590)
                      |.-++.+..-++.|..+++..++. ++-+...|.+....--..|+.+....++..-    ...|+..+...|..=...+-
T Consensus       412 LwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e  490 (913)
T KOG0495|consen  412 LWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACE  490 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHh
Confidence            334555666677777777777664 6667777776666666677777777665543    33567777777766666666


Q ss_pred             hcCChHHHHHHHhccCC------CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHH
Q 038522          178 KCGWIEDAWILFERIER------KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKI  251 (590)
Q Consensus       178 ~~~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a  251 (590)
                      ..|..-.+..+...+..      .-..+|..-...|.+.+-++-|..+|....+. .+-+...+......--..|..+..
T Consensus       491 ~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl  569 (913)
T KOG0495|consen  491 DAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESL  569 (913)
T ss_pred             hcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHH
Confidence            66766666666555432      23456777788888888888888888887764 233444555555555667888999


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCC---CccchHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038522          252 SQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKT---DIISCTALISGFARDDNHSKEAFDLFKDMILK  328 (590)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~  328 (590)
                      ..+++.....- +.....+......+-..|++..|..++....+.   +...|-.-+.....+.+ ++.|..+|.+... 
T Consensus       570 ~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e-~eraR~llakar~-  646 (913)
T KOG0495|consen  570 EALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDE-LERARDLLAKARS-  646 (913)
T ss_pred             HHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHHHHhc-
Confidence            99999988764 455667777778888899999999999988543   34567777777788888 9999999998875 


Q ss_pred             CCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHH
Q 038522          329 KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTS  405 (590)
Q Consensus       329 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~  405 (590)
                       ..|+...|.--+..--..++.++|.++++...+.-+. -...|..+...+.+.++++.|...|..-.+  | .+..|-.
T Consensus       647 -~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWll  724 (913)
T KOG0495|consen  647 -ISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLL  724 (913)
T ss_pred             -cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHH
Confidence             4677777777777777788999999999887775433 467788888999999999999999987765  4 4457777


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 038522          406 LIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG  485 (590)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  485 (590)
                      |...--+.|++-.|..++++..-.+ +-+...|...++.-.+.|+.+.|..+..+..+.  .+.+...|..-|....+.+
T Consensus       725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe--cp~sg~LWaEaI~le~~~~  801 (913)
T KOG0495|consen  725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE--CPSSGLLWAEAIWLEPRPQ  801 (913)
T ss_pred             HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCccchhHHHHHHhccCcc
Confidence            8888888899999999999988762 347788888999999999999999999998874  4455677888888888888


Q ss_pred             ChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          486 QLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       486 ~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +-..+.+.+++..  -|+...-.+...+....++++|..-|+++++.+|++..+|..+...+...|.-++-.+++.....
T Consensus       802 rkTks~DALkkce--~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  802 RKTKSIDALKKCE--HDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             cchHHHHHHHhcc--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            8888888888874  35566777788888999999999999999999999999999999999999999999999998766


Q ss_pred             cCCccCCCceEEeecCccccc
Q 038522          566 RSLRKNPGYSFLQSSKKNILL  586 (590)
Q Consensus       566 ~~~~~~~~~~~~~~~~~~~~~  586 (590)
                      ..  |.-|..|..+++++.+.
T Consensus       880 ~E--P~hG~~W~avSK~i~n~  898 (913)
T KOG0495|consen  880 AE--PTHGELWQAVSKDIKNW  898 (913)
T ss_pred             cC--CCCCcHHHHHhhhHHhc
Confidence            44  67789999999887543

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.83  E-value=4e-16  Score=139.26  Aligned_cols=421  Identities=14%  Similarity=0.175  Sum_probs=267.6

Q ss_pred             cccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHH--hcCChHHH-HHHhccC---------------
Q 038522           30 PSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYA--KVGDVLSA-RKAFDRM---------------   91 (590)
Q Consensus        30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~--~~g~~~~a-~~~~~~~---------------   91 (590)
                      +.+=+.+++.. ..|.+.++.-+++.|.+.|++.++..-..|...-+  ...++--| .+.|-.|               
T Consensus       116 V~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~  194 (625)
T KOG4422|consen  116 VETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA  194 (625)
T ss_pred             hcchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence            33555565543 45677778888888888887777766655554322  22221111 1222222               


Q ss_pred             --------CCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCC
Q 038522           92 --------PERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFV  163 (590)
Q Consensus        92 --------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  163 (590)
                              ...+..+|..+|.++++--..+.|.+++++-.+...+.+..+||.+|.+-.-    ...++++.+|....+.
T Consensus       195 vAdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~  270 (625)
T KOG4422|consen  195 VADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMT  270 (625)
T ss_pred             HHHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcC
Confidence                    2234567778888888877778888888887777777788888887776432    2226777777777777


Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 038522          164 ENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASV  243 (590)
Q Consensus       164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  243 (590)
                      ||..|+|+++.+..+.|+++.|..                           .|++++.+|++-|+.|...+|..+|..++
T Consensus       271 Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePsLsSyh~iik~f~  323 (625)
T KOG4422|consen  271 PNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPSLSSYHLIIKNFK  323 (625)
T ss_pred             CchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcchhhHHHHHHHhc
Confidence            887777777777777777765543                           35677888888888888888888888888


Q ss_pred             cCCChhH-HHHHHHHHHHh--C--C----CCChhHHHHHHHHHHhcCChHHHHHHHHhccC--------C---CccchHH
Q 038522          244 GGIELMK-ISQIHDLIIKL--G--L----ESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--------T---DIISCTA  303 (590)
Q Consensus       244 ~~~~~~~-a~~~~~~~~~~--~--~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~---~~~~~~~  303 (590)
                      +.++..+ +..++.++...  |  +    +.|...|..-|..|.+..+.+-|.++-.-+..        +   ...-|..
T Consensus       324 re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~  403 (625)
T KOG4422|consen  324 RESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRK  403 (625)
T ss_pred             ccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHH
Confidence            7777644 44444444431  1  2    23445666777777788887777776554421        1   1234566


Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC
Q 038522          304 LISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSG  383 (590)
Q Consensus       304 l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  383 (590)
                      +....++... .+..+..|+.|+-.-+.|++.+...++++....+.++...++|..++..|.........-++..+++..
T Consensus       404 ~~~licq~es-~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k  482 (625)
T KOG4422|consen  404 FFDLICQMES-IDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDK  482 (625)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCC
Confidence            7777777777 899999999999888899999999999999999999999999999999886655554444444444322


Q ss_pred             ChHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHH-HHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHH
Q 038522          384 EIADANRAFDEMGDKNVISWTSLIAGYAKH-GYGHEA-IELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDM  461 (590)
Q Consensus       384 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a-~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  461 (590)
                      -            .|+...-..+-....+. -++.++ ...-.+|.+...  .....+.++-.+.+.|..++|.+++..+
T Consensus       483 ~------------hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l~~ia~Ll~R~G~~qkA~e~l~l~  548 (625)
T KOG4422|consen  483 L------------HPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSLNCIAILLLRAGRTQKAWEMLGLF  548 (625)
T ss_pred             C------------CCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHHHHHHHHHHHcchHHHHHHHHHHH
Confidence            0            12211111111111110 011121 222334454433  3444555566678888999999988888


Q ss_pred             HhhcCCCCChhHHHHH---HHHHHhcCChHHHHHHHHhc
Q 038522          462 INKYRILPRAEHFSCV---VDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       462 ~~~~~~~~~~~~~~~l---~~~~~~~g~~~~A~~~~~~~  497 (590)
                      .++++-.|.....+++   ++.-.+.+++-.|...++-|
T Consensus       549 ~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a  587 (625)
T KOG4422|consen  549 LRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA  587 (625)
T ss_pred             HhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            7664444555555544   34445566667777666665

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.83  E-value=3.4e-15  Score=153.43  Aligned_cols=434  Identities=10%  Similarity=0.035  Sum_probs=251.8

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCH--hhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChH
Q 038522          106 YAQNGYDENALLVFSAMLRSGVRANQ--FTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIE  183 (590)
Q Consensus       106 ~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  183 (590)
                      ..+.|+++.|+..|++..+.  .|+.  ..+ .++..+...|+.++|...++..... -+........+...|...|+++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHHHHHHcCCHH
Confidence            35777777777777777664  3443  233 6666666667777777777777621 1222333333455777777777


Q ss_pred             HHHHHHhccCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHH
Q 038522          184 DAWILFERIER--K-DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIK  260 (590)
Q Consensus       184 ~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  260 (590)
                      +|.++|+++.+  | +...+..++..+...++.++|++.++++...  .|+...+..+...+...++..+|.+.++++.+
T Consensus       120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            77777777764  2 3445556666777777777777777777655  45555554444444445555557777777777


Q ss_pred             hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH---HHH
Q 038522          261 LGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD---VIL  337 (590)
Q Consensus       261 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~  337 (590)
                      .. +.+...+..++.+..+.|-...|.++.++-+  +..+-.....  .   . .+.+.+..+.    +..++.   .-|
T Consensus       198 ~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p--~~f~~~~~~~--l---~-~~~~a~~vr~----a~~~~~~~~~r~  264 (822)
T PRK14574        198 LA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP--NLVSAEHYRQ--L---E-RDAAAEQVRM----AVLPTRSETERF  264 (822)
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc--cccCHHHHHH--H---H-HHHHHHHHhh----cccccccchhhH
Confidence            64 5556666777777777777777777666543  1111111100  0   0 1111111111    111110   011


Q ss_pred             HHHHHHHhchhhhHhHHHHHHHHHH-hCCCcc-----hhHHHHHHHHHHhcCChHHHHHHHHhcCCCC----cchHHHHH
Q 038522          338 CLMLNICANVASLNLGRQIHAFAFK-YQSSYD-----AAVGNALIDMYAKSGEIADANRAFDEMGDKN----VISWTSLI  407 (590)
Q Consensus       338 ~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~l~  407 (590)
                      ..+          +.+..-++.+.. .+..|.     ....--.+-++...|++.++++.|+.+..+.    ..+-..+.
T Consensus       265 ~~~----------d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~a  334 (822)
T PRK14574        265 DIA----------DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAA  334 (822)
T ss_pred             HHH----------HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHH
Confidence            111          122222222222 111111     1111123345566677777777777777322    22445567


Q ss_pred             HHHHhcCCchHHHHHHHHHHHcC-----CCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcC----------CCCC--
Q 038522          408 AGYAKHGYGHEAIELYKKMKHEG-----MVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYR----------ILPR--  470 (590)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------~~~~--  470 (590)
                      .+|...+++++|..+++++....     ..++......|..++...+++++|..+++.+.+...          -.|+  
T Consensus       335 dayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d  414 (822)
T PRK14574        335 SAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDD  414 (822)
T ss_pred             HHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCcc
Confidence            77777777777777777775532     122333345677777777777777777777765211          0122  


Q ss_pred             -hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          471 -AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       471 -~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                       ...+..++..+...|++.+|++.++++ ...| |......+...+...|.+..|++.++.+..++|.+..+...++.++
T Consensus       415 ~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~a  494 (822)
T PRK14574        415 WIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETA  494 (822)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHH
Confidence             233444566677777777777777777 3333 5666677777777777777777777777777777777777777777


Q ss_pred             HhcCChHHHHHHHHHhhhcCC
Q 038522          548 TAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       548 ~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ...|+|.+|.++.+.+.+..+
T Consensus       495 l~l~e~~~A~~~~~~l~~~~P  515 (822)
T PRK14574        495 MALQEWHQMELLTDDVISRSP  515 (822)
T ss_pred             HhhhhHHHHHHHHHHHHhhCC
Confidence            777777777777766655433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.81  E-value=3.7e-16  Score=163.87  Aligned_cols=405  Identities=10%  Similarity=0.008  Sum_probs=233.1

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038522           62 ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSAL  138 (590)
Q Consensus        62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  138 (590)
                      +.++....-.+.+....|+.++|++++.....   .+...+..+...+...|++++|.++|++..+.. +.+...+..+.
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la   90 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI   90 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            34444455556667778888888888887654   233347777788888888888888888877642 23355566666


Q ss_pred             HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcchHHHHHHHHHhcCCchH
Q 038522          139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--K-DVVSWNAMIGGLAMQGFNDD  215 (590)
Q Consensus       139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~  215 (590)
                      ..+...|++++|...++.+.+.. +.+.. +..+..++...|+.++|+..++++.+  | +...+..+..++...+..+.
T Consensus        91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~  168 (765)
T PRK10049         91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAP  168 (765)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHH
Confidence            67777888888888888887763 33444 76777777778888888888877764  3 33445556666777777777


Q ss_pred             HHHHHHHHHHcCCCCChh------hHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh---HHH
Q 038522          216 SFWLFRSMMRQGMKPDCF------TLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSI---RSA  286 (590)
Q Consensus       216 a~~~~~~m~~~~~~p~~~------~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a  286 (590)
                      |++.++....   .|+..      ....++.....                              ......+++   ++|
T Consensus       169 Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~------------------------------~~~~~~~r~~~ad~A  215 (765)
T PRK10049        169 ALGAIDDANL---TPAEKRDLEADAAAELVRLSFM------------------------------PTRSEKERYAIADRA  215 (765)
T ss_pred             HHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcc------------------------------cccChhHHHHHHHHH
Confidence            7777765543   23210      00000110000                              000111122   445


Q ss_pred             HHHHHhccC---CCccc---hH----HHHHHHHhcCCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhchhhhHhHHH
Q 038522          287 YQLYRSMLK---TDIIS---CT----ALISGFARDDNHSKEAFDLFKDMILKKMG-IDDVILCLMLNICANVASLNLGRQ  355 (590)
Q Consensus       287 ~~~~~~~~~---~~~~~---~~----~l~~~~~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~  355 (590)
                      ++.++.+..   .++..   +.    ..+..+...++ +++|+..|+.+.+.+.. |+. ....                
T Consensus       216 l~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~-~~eA~~~~~~ll~~~~~~P~~-a~~~----------------  277 (765)
T PRK10049        216 LAQYDALEALWHDNPDATADYQRARIDRLGALLARDR-YKDVISEYQRLKAEGQIIPPW-AQRW----------------  277 (765)
T ss_pred             HHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhh-HHHHHHHHHHhhccCCCCCHH-HHHH----------------
Confidence            555554431   11111   10    11233445556 77777777777655421 221 1111                


Q ss_pred             HHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-------cchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522          356 IHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN-------VISWTSLIAGYAKHGYGHEAIELYKKMKH  428 (590)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  428 (590)
                                         +..+|...|++++|+..|+++.+.+       ...+..+..++...|++++|...++++.+
T Consensus       278 -------------------la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~  338 (765)
T PRK10049        278 -------------------VASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN  338 (765)
T ss_pred             -------------------HHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence                               2233444444444444444433211       11223333344555555555555555544


Q ss_pred             cC-----------CCCcH---HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 038522          429 EG-----------MVPND---VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMI  494 (590)
Q Consensus       429 ~g-----------~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  494 (590)
                      ..           -.|+.   ..+..+...+...|++++|++.++++...  .+.+...+..+...+...|++++|++.+
T Consensus       339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~--~P~n~~l~~~lA~l~~~~g~~~~A~~~l  416 (765)
T PRK10049        339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN--APGNQGLRIDYASVLQARGWPRAAENEL  416 (765)
T ss_pred             cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence            31           12331   23445566677778888888888887754  2334667777777788888888888888


Q ss_pred             Hhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHH
Q 038522          495 RQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYV  541 (590)
Q Consensus       495 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  541 (590)
                      ++. ...|+ ...+...+..+...|++++|+..++++++..|+++.+..
T Consensus       417 ~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~  465 (765)
T PRK10049        417 KKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQR  465 (765)
T ss_pred             HHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            877 55564 445555666677778888888888888888886665433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.81  E-value=5.2e-17  Score=145.83  Aligned_cols=480  Identities=14%  Similarity=0.059  Sum_probs=298.7

Q ss_pred             cHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhH-HHHHHHHHHhcCChHHHHHHhccCCC--CC------ccchHHH
Q 038522           32 TYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHL-STKVIIFYAKVGDVLSARKAFDRMPE--RN------VVSWTAM  102 (590)
Q Consensus        32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~--~~------~~~~~~l  102 (590)
                      .+..|.+-|.......+|+..++-+++...-|+.-. -..+.+.+.+.+.+.+|++.++....  |+      +...+.+
T Consensus       203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni  282 (840)
T KOG2003|consen  203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI  282 (840)
T ss_pred             HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence            444455566666677788888888777665555433 33455667788888888887765433  22      1233344


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522          103 ISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI  182 (590)
Q Consensus       103 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  182 (590)
                      --.+.+.|+++.|+..|+...+.  .|+-.+-..++-++...|+-+...+.|..|+.....||..-|       .+..+ 
T Consensus       283 gvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddky-------i~~~d-  352 (840)
T KOG2003|consen  283 GVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKY-------IKEKD-  352 (840)
T ss_pred             CeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccc-------cCCcC-
Confidence            44567788888888888887764  477666555555556667888888888888775444433211       11000 


Q ss_pred             HHHHHHHhccCCCCcchHHHHH-----HHHHhcC--CchHHHHHHHHHHHcCCCCChh-hHHHHHHHhccCCChhHHHHH
Q 038522          183 EDAWILFERIERKDVVSWNAMI-----GGLAMQG--FNDDSFWLFRSMMRQGMKPDCF-TLGSILRASVGGIELMKISQI  254 (590)
Q Consensus       183 ~~A~~~~~~~~~~~~~~~~~li-----~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~  254 (590)
                                 .|+....+.-|     +-.-+.+  +.++++-.-.++..--+.|+-. .|...+..+-.....+.|.  
T Consensus       353 -----------dp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~--  419 (840)
T KOG2003|consen  353 -----------DPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI--  419 (840)
T ss_pred             -----------CcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh--
Confidence                       01111111111     1111110  1112222222222211222211 1111111111111111111  


Q ss_pred             HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHH-----HHHHHHhcCCChHHHHHHHHHHHHcC
Q 038522          255 HDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTA-----LISGFARDDNHSKEAFDLFKDMILKK  329 (590)
Q Consensus       255 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~~a~~~~~~~~~~~  329 (590)
                                 +..+  .-..-+.+.|+++.|.++++-..+.|..+-.+     -.--|.+.|+++..|.++-+..+...
T Consensus       420 -----------dlei--~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d  486 (840)
T KOG2003|consen  420 -----------DLEI--NKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID  486 (840)
T ss_pred             -----------hhhh--hHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc
Confidence                       1110  11223667777777777777665544333222     22233344444556655555444221


Q ss_pred             CCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHH
Q 038522          330 MGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSL  406 (590)
Q Consensus       330 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l  406 (590)
                       .-+......--......|++++|...++.............||.=+ .+...|++++|+..|-++.   ..+....-.+
T Consensus       487 -ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qi  564 (840)
T KOG2003|consen  487 -RYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQI  564 (840)
T ss_pred             -ccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence             1222222222223345678888888888877766555555555333 4567899999999998775   4677777778


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ  486 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  486 (590)
                      ...|-...++..|++++-+.... ++.|+..+..|...|-+.|+-..|.+.+-+-.+  -++.+..+...|...|....-
T Consensus       565 aniye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf  641 (840)
T KOG2003|consen  565 ANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQF  641 (840)
T ss_pred             HHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHH
Confidence            88899999999999999887764 444788999999999999999999987766554  456689999999999999999


Q ss_pred             hHHHHHHHHhc-CCCCCHhHHHHHHHHHH-hcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522          487 LESAYNMIRQM-NIKPTASLWSAILGACS-IYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGA  552 (590)
Q Consensus       487 ~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  552 (590)
                      +++|+.+|++. -+.|+..-|..++..|. +.|++.+|...|+.+.+..|.+...+..|.+++...|.
T Consensus       642 ~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  642 SEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence            99999999998 78899999999998875 67999999999999999999999999999999988875

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.78  E-value=1.9e-14  Score=128.66  Aligned_cols=418  Identities=13%  Similarity=0.108  Sum_probs=279.2

Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC--chh-hHHHHHHHHHhcCCCCchHHHHHH
Q 038522           96 VVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMR--WLQ-GGRMIQGSIQKGRFVENLFVKSAL  172 (590)
Q Consensus        96 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~-~a~~~~~~~~~~~~~~~~~~~~~l  172 (590)
                      +.+=|.|++. ..+|....+.-+|+.|...|+..+...-..+++..+-.+  ++- .-.+.|-.|.+.|- .+..+|   
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E-~S~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGE-DSTSSW---  190 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccc-cccccc---
Confidence            3455666654 567889999999999999998888887777777643222  222 11223333333331 111111   


Q ss_pred             HHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHH
Q 038522          173 LDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKIS  252 (590)
Q Consensus       173 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~  252 (590)
                           +.|...  . ++-+..-.+..++..+|.++|+--..+.|.+++++-.....+.+..+||.+|.+.+-..+    .
T Consensus       191 -----K~G~vA--d-L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K  258 (625)
T KOG4422|consen  191 -----KSGAVA--D-LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----K  258 (625)
T ss_pred             -----ccccHH--H-HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----H
Confidence                 233332  2 333333345667888888888888888888888888777778888888888776443222    6


Q ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH----HHhc----cCCCccchHHHHHHHHhcCCChHHHHHHHHH
Q 038522          253 QIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQL----YRSM----LKTDIISCTALISGFARDDNHSKEAFDLFKD  324 (590)
Q Consensus       253 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~  324 (590)
                      +++.+|.+..+.||..|+|+++.+..+.|+++.|...    +.+|    ++|...+|..+|..+++.+++.+.+..++.+
T Consensus       259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d  338 (625)
T KOG4422|consen  259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND  338 (625)
T ss_pred             HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence            7778888888888888888888888888877665544    3333    5677778888888888877744556666666


Q ss_pred             HHHc----CCCC----CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhC----CCcc---hhHHHHHHHHHHhcCChHHHH
Q 038522          325 MILK----KMGI----DDVILCLMLNICANVASLNLGRQIHAFAFKYQ----SSYD---AAVGNALIDMYAKSGEIADAN  389 (590)
Q Consensus       325 ~~~~----~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~A~  389 (590)
                      +...    .++|    |...|...+..|.+..+.+.|.++...+....    +.|+   ..-|..+..+.|+....+.-.
T Consensus       339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~  418 (625)
T KOG4422|consen  339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL  418 (625)
T ss_pred             HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5542    2222    44667788999999999999999887775422    2222   233456777888889999999


Q ss_pred             HHHHhcCC----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC-Ch---H-----H---
Q 038522          390 RAFDEMGD----KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG-LT---C-----E---  453 (590)
Q Consensus       390 ~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~---~-----~---  453 (590)
                      ..|+.|..    |+..+...++++..-.|+++-.-++|..++..|...+.....-++..+++.. ..   +     .   
T Consensus       419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~a  498 (625)
T KOG4422|consen  419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFA  498 (625)
T ss_pred             HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHH
Confidence            99999873    6777888888888889999999999999998876555554444444444433 11   0     0   


Q ss_pred             --HHHHH-------HHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-------CCCCCHhHHHHHHHHHHhcC
Q 038522          454 --GWELF-------TDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-------NIKPTASLWSAILGACSIYG  517 (590)
Q Consensus       454 --a~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~~~~~~l~~~~~~~~  517 (590)
                        |..++       .++.   ..+-.....+...-.+.|.|+.++|.+++.-.       +..|.......++.+....+
T Consensus       499 k~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~  575 (625)
T KOG4422|consen  499 KCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSN  575 (625)
T ss_pred             HHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcC
Confidence              11111       1122   23344566777777888999999998888665       23444445556777777888


Q ss_pred             CchHHHHHHHHHhcCC
Q 038522          518 NTSLGELAARNLFDME  533 (590)
Q Consensus       518 ~~~~a~~~~~~~~~~~  533 (590)
                      ....|...++-+...+
T Consensus       576 spsqA~~~lQ~a~~~n  591 (625)
T KOG4422|consen  576 SPSQAIEVLQLASAFN  591 (625)
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            8888888888886544

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.77  E-value=7.1e-14  Score=136.76  Aligned_cols=559  Identities=13%  Similarity=0.068  Sum_probs=349.1

Q ss_pred             cccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 038522            8 FKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK   86 (590)
Q Consensus         8 ~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~   86 (590)
                      .-.|+.++|.+++..+ ...+....+|..|..++-.+|+..++...+-.+-... +.|...|..+.....+.|.++.|.-
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence            3349999999999999 8888889999999999999999999988776655554 5677899999999999999999999


Q ss_pred             HhccCCCCCccchH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH----HHHHhccCchhhHHHHHHHHHh
Q 038522           87 AFDRMPERNVVSWT---AMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSA----LRACARMRWLQGGRMIQGSIQK  159 (590)
Q Consensus        87 ~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l----l~~~~~~~~~~~a~~~~~~~~~  159 (590)
                      .|.+..+.++.-|.   .-...|-+.|+...|.+-|.++.....+.|..-+..+    ++.+...++-+.|.+.++....
T Consensus       229 cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  229 CYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS  308 (895)
T ss_pred             HHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            99998874444343   4456788999999999999999886433333333333    4445566666888888887766


Q ss_pred             c-CCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC----C----------------------CcchHH----HHHHHHH
Q 038522          160 G-RFVENLFVKSALLDLYAKCGWIEDAWILFERIER----K----------------------DVVSWN----AMIGGLA  208 (590)
Q Consensus       160 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~----------------------~~~~~~----~li~~~~  208 (590)
                      . +-..+...++.++..|.+...++.|.........    +                      +..+|+    -+.-++.
T Consensus       309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~  388 (895)
T KOG2076|consen  309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV  388 (895)
T ss_pred             hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence            2 3345566788888889999888888877654432    1                      111121    1222333


Q ss_pred             hcCCchHHHHHHHHHHHcCCCC--ChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHH
Q 038522          209 MQGFNDDSFWLFRSMMRQGMKP--DCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSA  286 (590)
Q Consensus       209 ~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  286 (590)
                      .....+...-+.....+.++.|  +...|.-+..++...|++..|..++..+......-+..+|-.+.++|...|..+.|
T Consensus       389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A  468 (895)
T KOG2076|consen  389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA  468 (895)
T ss_pred             cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence            4444444444445555555333  45567888889999999999999999998876666678888899999999999999


Q ss_pred             HHHHHhccCCCc---cchHHHHHHHHhcCCChHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHhchhhhHhHHH
Q 038522          287 YQLYRSMLKTDI---ISCTALISGFARDDNHSKEAFDLFKDMIL--------KKMGIDDVILCLMLNICANVASLNLGRQ  355 (590)
Q Consensus       287 ~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~--------~~~~p~~~~~~~ll~~~~~~~~~~~a~~  355 (590)
                      .+.|+.+....+   ..--.|-..+.+.|+ .++|.+.+..+..        .+..|+..........+...|+.++-..
T Consensus       469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~-~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~  547 (895)
T KOG2076|consen  469 IEFYEKVLILAPDNLDARITLASLYQQLGN-HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFIN  547 (895)
T ss_pred             HHHHHHHHhcCCCchhhhhhHHHHHHhcCC-HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHH
Confidence            999998854333   334445566777888 8999999888542        2344444445555556666666665554


Q ss_pred             HHHHHHHhCCC----------------------cchhHHHHHHHHHHhcCChHHHHHHHHhc--------CCCCc----c
Q 038522          356 IHAFAFKYQSS----------------------YDAAVGNALIDMYAKSGEIADANRAFDEM--------GDKNV----I  401 (590)
Q Consensus       356 ~~~~~~~~~~~----------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~----~  401 (590)
                      +...++.....                      ........++.+-.+.++......-...-        ..-..    .
T Consensus       548 t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfe  627 (895)
T KOG2076|consen  548 TASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFE  627 (895)
T ss_pred             HHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHH
Confidence            44433321110                      00111111111111111111111100000        00011    1


Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHH---H-HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC---hhH
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDV---T-FLSLLFACSHTGLTCEGWELFTDMINKYRILPR---AEH  473 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~---~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~  473 (590)
                      .+.-++.++++.+++++|+.+...+.....-- +..   . -...+.++...+++..|...++.|...++...+   ...
T Consensus       628 l~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l  707 (895)
T KOG2076|consen  628 LFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNL  707 (895)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence            22334556666666677766666665432111 111   1 123334455666666666666666554332222   122


Q ss_pred             HHHHH-----------------------------------HHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHH-HHH--
Q 038522          474 FSCVV-----------------------------------DLFARRGQLESAYNMIRQM-NIKPTASLWSAILG-ACS--  514 (590)
Q Consensus       474 ~~~l~-----------------------------------~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~-~~~--  514 (590)
                      |+...                                   ..+...+.+..|+..+-+. ...|+.+..+..+. ++.  
T Consensus       708 ~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih~  787 (895)
T KOG2076|consen  708 WNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIHL  787 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence            22111                                   1223345667777766665 45566544443332 211  


Q ss_pred             --------hcCCchHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          515 --------IYGNTSLGELAARNLFDMEPE--KSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       515 --------~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                              ++-.+-++..++++-.++.-.  ...+.++++++|...|-..-|..++++..+-.+
T Consensus       788 a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p  851 (895)
T KOG2076|consen  788 ALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP  851 (895)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence                    223445667777777665542  567889999999999999999999999987643

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.75  E-value=3.6e-13  Score=131.94  Aligned_cols=531  Identities=10%  Similarity=0.058  Sum_probs=369.2

Q ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccC---CCCCccchHHHHHHHHhc
Q 038522           33 YMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRM---PERNVVSWTAMISGYAQN  109 (590)
Q Consensus        33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~li~~~~~~  109 (590)
                      ...........|++++|..++.+.++.. +.+...|..|...|-..|+.+++...+-..   ...|...|-.+.......
T Consensus       142 ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~  220 (895)
T KOG2076|consen  142 LLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQL  220 (895)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhc
Confidence            3344444555699999999999999986 678899999999999999999998766443   335667898999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHH----HHHHHHHhcCChHHH
Q 038522          110 GYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKS----ALLDLYAKCGWIEDA  185 (590)
Q Consensus       110 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~~A  185 (590)
                      |++++|.-+|.+.++.. +++...+---...|-+.|+...|...+.++.....+.|..-..    ..+..+...++-+.|
T Consensus       221 ~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a  299 (895)
T KOG2076|consen  221 GNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERA  299 (895)
T ss_pred             ccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHH
Confidence            99999999999999864 2343333344556788999999999999999875444433333    335566677777888


Q ss_pred             HHHHhccCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCh----------------------hhH---
Q 038522          186 WILFERIER-----KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDC----------------------FTL---  235 (590)
Q Consensus       186 ~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----------------------~~~---  235 (590)
                      .+.++....     -+...++.++..+.+...++.+......+......+|.                      ..|   
T Consensus       300 ~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~  379 (895)
T KOG2076|consen  300 AKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLR  379 (895)
T ss_pred             HHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccch
Confidence            888877654     24566889999999999999999998888762222221                      111   


Q ss_pred             -HHHHHHhccCCChhHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhccC----CCccchHHHHHHH
Q 038522          236 -GSILRASVGGIELMKISQIHDLIIKLG--LESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK----TDIISCTALISGF  308 (590)
Q Consensus       236 -~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~l~~~~  308 (590)
                       ..++-++......+....+........  +.-+...|.-+..+|...|++..|+.+|..+..    .+...|-.+...+
T Consensus       380 v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~  459 (895)
T KOG2076|consen  380 VIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCY  459 (895)
T ss_pred             hHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHH
Confidence             233445566677777777777777777  444567889999999999999999999999953    2456788888999


Q ss_pred             HhcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhchhhhHhHHHHHHHHHH--------hCCCcchhHHHHHHHHH
Q 038522          309 ARDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICANVASLNLGRQIHAFAFK--------YQSSYDAAVGNALIDMY  379 (590)
Q Consensus       309 ~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~  379 (590)
                      ...+. +++|...|...+..  .|+. ..-.++-..+...|+.++|.+.+..+..        .+..|...+.......+
T Consensus       460 ~~l~e-~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l  536 (895)
T KOG2076|consen  460 MELGE-YEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDIL  536 (895)
T ss_pred             HHHhh-HHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHH
Confidence            99999 99999999999865  4543 3444566667789999999999888542        34556667777777888


Q ss_pred             HhcCChHHHHHHHHhcCC---------C-----------------CcchHHHHHHHHHhcCCchHHHHHH------HHHH
Q 038522          380 AKSGEIADANRAFDEMGD---------K-----------------NVISWTSLIAGYAKHGYGHEAIELY------KKMK  427 (590)
Q Consensus       380 ~~~~~~~~A~~~~~~~~~---------~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~------~~m~  427 (590)
                      .+.|+.++-..+-..|..         |                 +..+...++.+-.+.++......-.      .--.
T Consensus       537 ~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e  616 (895)
T KOG2076|consen  537 FQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVE  616 (895)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhh
Confidence            888988776555544431         1                 1111222333333333322111111      1111


Q ss_pred             HcCCCCcH--HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChh----HHHHHHHHHHhcCChHHHHHHHHhc----
Q 038522          428 HEGMVPND--VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAE----HFSCVVDLFARRGQLESAYNMIRQM----  497 (590)
Q Consensus       428 ~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~----  497 (590)
                      ..|+.-+.  ..+.-++.++.+.+++++|..+...+...+-+..+..    .-...+.+....+++..|.+.++.+    
T Consensus       617 ~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~  696 (895)
T KOG2076|consen  617 LRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQF  696 (895)
T ss_pred             hccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence            22333322  3456677788899999999999999887643333333    2234456677889999999999888    


Q ss_pred             C--CCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          498 N--IKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEK-SVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       498 ~--~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +  ..|. ...|+...+...+.++-.--......+....|++ +..+...+......+.|..|++.+-.+-..++
T Consensus       697 ~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~p  771 (895)
T KOG2076|consen  697 QFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNP  771 (895)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCC
Confidence            1  1332 3456655666666666666666666666666766 55566667778888888888887766655543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.75  E-value=3.1e-12  Score=120.82  Aligned_cols=486  Identities=13%  Similarity=0.087  Sum_probs=380.6

Q ss_pred             ccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHH
Q 038522           43 KKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVF  119 (590)
Q Consensus        43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~  119 (590)
                      ..+.+.|..++....+. ++.+...|.+    |++..-++.|.++++...+   .+...|-+-...--.+|+.+...+++
T Consensus       389 lE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii  463 (913)
T KOG0495|consen  389 LEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKII  463 (913)
T ss_pred             ccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHH
Confidence            34555577777777765 3445555544    4555667888888877665   45667777666667889988888877


Q ss_pred             HH----HHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCC--chHHHHHHHHHHHhcCChHHHHHHHhccC
Q 038522          120 SA----MLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVE--NLFVKSALLDLYAKCGWIEDAWILFERIE  193 (590)
Q Consensus       120 ~~----m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  193 (590)
                      ++    +...|+..+...|..=...|-..|..-.+..+....+.-|++.  -..+|..-...|.+.+.++-|..+|....
T Consensus       464 ~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~al  543 (913)
T KOG0495|consen  464 DRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHAL  543 (913)
T ss_pred             HHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHH
Confidence            65    4557899999999988888999999999999999998888754  35688888999999999999999998876


Q ss_pred             C---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHH-HHHHhccCCChhHHHHHHHHHHHhCCCCChhH
Q 038522          194 R---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGS-ILRASVGGIELMKISQIHDLIIKLGLESSNKL  269 (590)
Q Consensus       194 ~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  269 (590)
                      +   .+...|...+..--..|..++...+|++....  .|....+-. .....-..|++..|..++....+.. +.+..+
T Consensus       544 qvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~--~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseei  620 (913)
T KOG0495|consen  544 QVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ--CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEI  620 (913)
T ss_pred             hhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHH
Confidence            5   35567888777777889999999999999876  454444433 3344556799999999999998876 448889


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcc--CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhc
Q 038522          270 TGSLIDVYAKYGSIRSAYQLYRSML--KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICAN  346 (590)
Q Consensus       270 ~~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~  346 (590)
                      +-.-+..-....+++.|..+|.+..  .++...|..-+...--.++ .++|++++++.++.  -|+- ..|..+-+.+.+
T Consensus       621 wlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~-~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~  697 (913)
T KOG0495|consen  621 WLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN-VEEALRLLEEALKS--FPDFHKLWLMLGQIEEQ  697 (913)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh-HHHHHHHHHHHHHh--CCchHHHHHHHhHHHHH
Confidence            9999999999999999999999884  4566677666665556677 99999999988865  5554 556667777888


Q ss_pred             hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHH
Q 038522          347 VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELY  423 (590)
Q Consensus       347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~  423 (590)
                      .++++.|...|..-.+.- +..+..+-.|...-.+.|.+-+|..+++...-   .|...|-..|+.-.+.|+.+.|..+.
T Consensus       698 ~~~ie~aR~aY~~G~k~c-P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lm  776 (913)
T KOG0495|consen  698 MENIEMAREAYLQGTKKC-PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLM  776 (913)
T ss_pred             HHHHHHHHHHHHhccccC-CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence            889998888776544432 34677888888888999999999999998763   36678999999999999999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC
Q 038522          424 KKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT  502 (590)
Q Consensus       424 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  502 (590)
                      .+..+. ++-+...|.--|...-+.++-......+++.      ..|+.+.-.+...+....++++|.+.|.+. ...||
T Consensus       777 akALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc------e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d  849 (913)
T KOG0495|consen  777 AKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC------EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD  849 (913)
T ss_pred             HHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc------cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            998886 4446667777776666666655555444433      456777888889999999999999999998 66665


Q ss_pred             -HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          503 -ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       503 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                       -.+|..+...+..+|.-++-.+++.+...-+|.....|.....--
T Consensus       850 ~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~hG~~W~avSK~i  895 (913)
T KOG0495|consen  850 NGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTHGELWQAVSKDI  895 (913)
T ss_pred             cchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCcHHHHHhhhH
Confidence             468888999999999999999999999999998888887776543

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.71  E-value=8.9e-12  Score=113.36  Aligned_cols=459  Identities=12%  Similarity=0.073  Sum_probs=275.6

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-hHHHH
Q 038522           62 ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQF-TYSSA  137 (590)
Q Consensus        62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~l  137 (590)
                      ..+...|..-.+.-..++++..|..+|+....   .+...|--.+..=.++.....|..++++....  -|.+. .|---
T Consensus        70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY  147 (677)
T KOG1915|consen   70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKY  147 (677)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHH
Confidence            34455555555555567778888888888765   56666777777778888888888888888763  34332 23333


Q ss_pred             HHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccC--CCCcchHHHHHHHHHhcCCchH
Q 038522          138 LRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIE--RKDVVSWNAMIGGLAMQGFNDD  215 (590)
Q Consensus       138 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~  215 (590)
                      +-.--..|++..|.++|+.-.+  .+|+...|.+.++.-.+.+.++.|..++++..  .|++.+|--..+.-.+.|+...
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~  225 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVAL  225 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHH
Confidence            3334456788888888887766  47888888888888888888888888888765  5788888888887788888888


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHh----ccCCChhHHHHHHHHHHHhCCCCC--hhHHHHHHHHHHhcCChHHHHHH
Q 038522          216 SFWLFRSMMRQGMKPDCFTLGSILRAS----VGGIELMKISQIHDLIIKLGLESS--NKLTGSLIDVYAKYGSIRSAYQL  289 (590)
Q Consensus       216 a~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~  289 (590)
                      |..+|+...+.  ..|...--.+..++    .+...++.|.-+|+-.+++= +.+  ...|..+...=-+-|+-....+.
T Consensus       226 aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~  302 (677)
T KOG1915|consen  226 ARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDA  302 (677)
T ss_pred             HHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHH
Confidence            88888776653  22232222333333    34556677777777666542 222  23444444444444554433332


Q ss_pred             H--------HhccCCCcc---chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhchhhhHhHHHH
Q 038522          290 Y--------RSMLKTDII---SCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDV--ILCLMLNICANVASLNLGRQI  356 (590)
Q Consensus       290 ~--------~~~~~~~~~---~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~~~a~~~  356 (590)
                      .        +.++..|+.   +|--.+......|+ .+...++|++.+.. ++|-..  .+                   
T Consensus       303 Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~-~~~Ire~yErAIan-vpp~~ekr~W-------------------  361 (677)
T KOG1915|consen  303 IVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD-KDRIRETYERAIAN-VPPASEKRYW-------------------  361 (677)
T ss_pred             HhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC-HHHHHHHHHHHHcc-CCchhHHHHH-------------------
Confidence            2        122222222   22223333333444 55555555555533 222110  00                   


Q ss_pred             HHHHHHhCCCcchhHHHHHHH---HHHhcCChHHHHHHHHhcCC--C-CcchHHH----HHHHHHhcCCchHHHHHHHHH
Q 038522          357 HAFAFKYQSSYDAAVGNALID---MYAKSGEIADANRAFDEMGD--K-NVISWTS----LIAGYAKHGYGHEAIELYKKM  426 (590)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~----l~~~~~~~~~~~~a~~~~~~m  426 (590)
                                 -..+|.-+=-   .-....+++.+.++|+...+  | ...||.-    ...-..++.+...|.+++...
T Consensus       362 -----------~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~A  430 (677)
T KOG1915|consen  362 -----------RRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNA  430 (677)
T ss_pred             -----------HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence                       0011111100   11234566677777766553  2 2233333    233344667778888888776


Q ss_pred             HHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHh-
Q 038522          427 KHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTAS-  504 (590)
Q Consensus       427 ~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~-  504 (590)
                      +  |..|...+|...|..-.+.++++.+..++++..+   ..| +..+|......=...|+.+.|..+|.-+-..|... 
T Consensus       431 I--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldm  505 (677)
T KOG1915|consen  431 I--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDM  505 (677)
T ss_pred             h--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccccc
Confidence            6  5578778888888777788888888888888874   344 46677777777777788888888887773344333 


Q ss_pred             ---HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH-----hcC-----------ChHHHHHHHHHhhh
Q 038522          505 ---LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT-----AAG-----------AWDNARKTRKLMEE  565 (590)
Q Consensus       505 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~  565 (590)
                         .|...+.--...|.+++|..+|+++++..+ +...|.+.+..-.     ..|           ....|.++|+....
T Consensus       506 pellwkaYIdFEi~~~E~ekaR~LYerlL~rt~-h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  506 PELLWKAYIDFEIEEGEFEKARALYERLLDRTQ-HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             HHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc-cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence               344444444467788888888888887777 4446666655443     233           44566666666533

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.68  E-value=8.5e-12  Score=113.49  Aligned_cols=482  Identities=10%  Similarity=0.045  Sum_probs=218.2

Q ss_pred             CChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhc
Q 038522           11 GQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFD   89 (590)
Q Consensus        11 g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~   89 (590)
                      +++..|..+|+++ .....+...|...+..-.+...+..|..+++..+..= +.-...|-.-+..--..|++..|..+|+
T Consensus        87 ~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY~ymEE~LgNi~gaRqife  165 (677)
T KOG1915|consen   87 KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKYIYMEEMLGNIAGARQIFE  165 (677)
T ss_pred             HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHHHHHHHHhcccHHHHHHHH
Confidence            3444555556555 3344444455555555555555666666666555542 1122223333333334455566666665


Q ss_pred             cCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhc-C-CCCc
Q 038522           90 RMPE--RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKG-R-FVEN  165 (590)
Q Consensus        90 ~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-~~~~  165 (590)
                      .-.+  |+..+|++.|+.=.+.+..+.|..++++..-  +.|+..+|.--.+---+.|+...+..+++..++. | -..+
T Consensus       166 rW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~  243 (677)
T KOG1915|consen  166 RWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEA  243 (677)
T ss_pred             HHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHH
Confidence            5332  5555666666655555556666666655543  3455555555555555555555555555555442 1 0111


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC--hhhHHHHHHHhc
Q 038522          166 LFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD--CFTLGSILRASV  243 (590)
Q Consensus       166 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~ll~~~~  243 (590)
                      ...+.+....-.++..++.|..+                               |+-..+. ++-+  ...|.....-=-
T Consensus       244 e~lfvaFA~fEe~qkE~ERar~i-------------------------------ykyAld~-~pk~raeeL~k~~~~fEK  291 (677)
T KOG1915|consen  244 EILFVAFAEFEERQKEYERARFI-------------------------------YKYALDH-IPKGRAEELYKKYTAFEK  291 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------------------------------HHHHHHh-cCcccHHHHHHHHHHHHH
Confidence            22233333333333444444444                               4433332 1111  112222222222


Q ss_pred             cCCChhHHHHH--------HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc-----cchHH-------
Q 038522          244 GGIELMKISQI--------HDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI-----ISCTA-------  303 (590)
Q Consensus       244 ~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~-------  303 (590)
                      +-|+....++.        ++.+++.+ +-|-.+|--.++.-...|+.+...++|+..+..-+     ..|.-       
T Consensus       292 qfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWin  370 (677)
T KOG1915|consen  292 QFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWIN  370 (677)
T ss_pred             HhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHH
Confidence            23332222221        22233222 44555555566666666666666666666532111     01111       


Q ss_pred             -HHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 038522          304 -LISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS  382 (590)
Q Consensus       304 -l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  382 (590)
                       .+-.-....+ ++.+.++++..++. ++-...||.-+--.+                               ...-.++
T Consensus       371 YalyeEle~ed-~ertr~vyq~~l~l-IPHkkFtFaKiWlmy-------------------------------A~feIRq  417 (677)
T KOG1915|consen  371 YALYEELEAED-VERTRQVYQACLDL-IPHKKFTFAKIWLMY-------------------------------AQFEIRQ  417 (677)
T ss_pred             HHHHHHHHhhh-HHHHHHHHHHHHhh-cCcccchHHHHHHHH-------------------------------HHHHHHH
Confidence             1111123345 77777777777752 333445554332222                               1222233


Q ss_pred             CChHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHH
Q 038522          383 GEIADANRAFDEMG--DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFT  459 (590)
Q Consensus       383 ~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~  459 (590)
                      .++..|.+++....  -|...+|...|..-.+.++++.+..++++.++-  .| |..+|......-...|+.+.|..+|+
T Consensus       418 ~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaife  495 (677)
T KOG1915|consen  418 LNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFE  495 (677)
T ss_pred             cccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            44444444444333  133344444444444555555555555555543  33 44555555544445555555555555


Q ss_pred             HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHH-----hcC-----------CchHH
Q 038522          460 DMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACS-----IYG-----------NTSLG  522 (590)
Q Consensus       460 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~-----~~~-----------~~~~a  522 (590)
                      -..+...+......|.+.|+.=...|.+++|..+++++ ...+...+|-++..--.     ..+           +...|
T Consensus       496 lAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~A  575 (677)
T KOG1915|consen  496 LAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRA  575 (677)
T ss_pred             HHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHH
Confidence            55543222222333444444445555555555555555 22333334444332211     122           45567


Q ss_pred             HHHHHHHhc----CCCCC--cchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522          523 ELAARNLFD----MEPEK--SVNYVVLSNIYTAAGAWDNARKTRKLM  563 (590)
Q Consensus       523 ~~~~~~~~~----~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (590)
                      ..+|+++..    ..|..  ...+..+-..-...|.-.+...+-..|
T Consensus       576 R~iferAn~~~k~~~~KeeR~~LLEaw~~~E~~~G~~~d~~~V~s~m  622 (677)
T KOG1915|consen  576 RKIFERANTYLKESTPKEERLMLLEAWKNMEETFGTEGDVERVQSKM  622 (677)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCchhhHHHHHHhc
Confidence            777777663    23311  122233333334445554544444444

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.67  E-value=9.1e-13  Score=128.55  Aligned_cols=533  Identities=11%  Similarity=0.019  Sum_probs=298.0

Q ss_pred             CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHH
Q 038522           24 PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMI  103 (590)
Q Consensus        24 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li  103 (590)
                      .|+.|+..+|..++..|+..|+.+.|- +|.-|.-...+-+...++.++....++++.+.+.       +|...+|..|.
T Consensus        19 ~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~Ll   90 (1088)
T KOG4318|consen   19 SGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTNLL   90 (1088)
T ss_pred             hcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHHHH
Confidence            688999999999999999999999888 9999988877788888999999888888877775       78889999999


Q ss_pred             HHHHhcCChHHHHHHHHH-H---H----HcCCCCCHhhHHHHHHH--------------HhccCchhhHHHHHHHHHhc-
Q 038522          104 SGYAQNGYDENALLVFSA-M---L----RSGVRANQFTYSSALRA--------------CARMRWLQGGRMIQGSIQKG-  160 (590)
Q Consensus       104 ~~~~~~~~~~~a~~~~~~-m---~----~~~~~p~~~~~~~ll~~--------------~~~~~~~~~a~~~~~~~~~~-  160 (590)
                      .+|...||... ++..++ |   .    ..|+.--..-+-..+++              ..-.|-++.+.+++..+-.. 
T Consensus        91 ~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~Pvsa  169 (1088)
T KOG4318|consen   91 KAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVPVSA  169 (1088)
T ss_pred             HHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCCccc
Confidence            99999999765 222222 2   1    12322111111111111              11222222222222221110 


Q ss_pred             CCCCchHHHHHHHHHHH-hcCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHH
Q 038522          161 RFVENLFVKSALLDLYA-KCGWIEDAWILFERIER-KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSI  238 (590)
Q Consensus       161 ~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  238 (590)
                      ...|..+    .++-.. ....+++-....+...+ ++..+|..++.+-..+|+.+.|..++.+|++.|++.+..-|..+
T Consensus       170 ~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL  245 (1088)
T KOG4318|consen  170 WNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL  245 (1088)
T ss_pred             ccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence            0011111    122111 12234444444444444 88999999999999999999999999999999999998888888


Q ss_pred             HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCcc----chHHHHHHHHhcCC-
Q 038522          239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDII----SCTALISGFARDDN-  313 (590)
Q Consensus       239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~l~~~~~~~~~-  313 (590)
                      +-+   .++...++.+++-|...|+.|+..|+...+..+.+.|....+..    ..+.+..    .+..+..+...... 
T Consensus       246 l~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e----~sq~~hg~tAavrsaa~rg~~a~k~l  318 (1088)
T KOG4318|consen  246 LLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEE----GSQLAHGFTAAVRSAACRGLLANKRL  318 (1088)
T ss_pred             hhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhccc----ccchhhhhhHHHHHHHhcccHhHHHH
Confidence            766   88889999999999999999999999888877777555222221    1111111    12222222111111 


Q ss_pred             ---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCc---chhHHHHHHHHHHhcCChHH
Q 038522          314 ---HSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSY---DAAVGNALIDMYAKSGEIAD  387 (590)
Q Consensus       314 ---~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~  387 (590)
                         ...-....+++..-.|+......|..... ....|.-+..+++...+.......   ++..+..++.-|.+.-+..-
T Consensus       319 ~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~-l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~  397 (1088)
T KOG4318|consen  319 RQNLRKSVIGSTKKLFLLGTDILEAIWSMCEK-LRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHI  397 (1088)
T ss_pred             HHHHHHHHHHHhhHHHHhccccchHHHHHHHH-HHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhH
Confidence               01112222233222344333333332222 223566666666666554432221   23333333333332111000


Q ss_pred             HHHHHH--hcCCCC--cchHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCC-------cHHHHHHHHHHhhccCChH
Q 038522          388 ANRAFD--EMGDKN--VISWTSLIAGYAKHGYGHEAIELYKKMKHE----GMVP-------NDVTFLSLLFACSHTGLTC  452 (590)
Q Consensus       388 A~~~~~--~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-------~~~~~~~ll~~~~~~~~~~  452 (590)
                      ...++.  +..+.+  ...-..+.....+. +...+.+-+......    -..|       -...-+.++..|++.-+..
T Consensus       398 ~~~i~~~~qgls~~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~l  476 (1088)
T KOG4318|consen  398 CSRIYYAGQGLSLNLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKL  476 (1088)
T ss_pred             HHHHHHHHHHHHhhhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            000000  000000  00000111111111 222222222211110    0111       1122334444555555555


Q ss_pred             HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-----CCCCCHhHHHHHHHHHHhcCCchHHHHHHH
Q 038522          453 EGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-----NIKPTASLWSAILGACSIYGNTSLGELAAR  527 (590)
Q Consensus       453 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  527 (590)
                      +++..-+..... -+   ...|..||+.+...++.+.|..+..+.     .+..|..-+..+.....+.+....+..+++
T Consensus       477 K~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~  552 (1088)
T KOG4318|consen  477 KILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILY  552 (1088)
T ss_pred             HHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHh
Confidence            555444444322 11   156788888888888888998888887     334455667777777888888888888888


Q ss_pred             HHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc-CCCceEEeecCc
Q 038522          528 NLFDME---PEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK-NPGYSFLQSSKK  582 (590)
Q Consensus       528 ~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~  582 (590)
                      ...+.-   |.-......+....+..|+.+.-.++.+-+...|+.. .|-...-+..++
T Consensus       553 e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~etgPl~~vhLrkdd  611 (1088)
T KOG4318|consen  553 EDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSETGPLWMVHLRKDD  611 (1088)
T ss_pred             hhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhcccceEEEeeccc
Confidence            877532   3234445566666777888888888888888877766 343333333333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.66  E-value=1.2e-12  Score=119.45  Aligned_cols=212  Identities=15%  Similarity=0.146  Sum_probs=170.7

Q ss_pred             hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHH
Q 038522          347 VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELY  423 (590)
Q Consensus       347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~  423 (590)
                      .|+.-.+..-++..++....+.. .|--+..+|....+.++....|++..+   .|+.+|..-.....-.+++++|..=|
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF  417 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF  417 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence            46677777777777776655433 255666778888999999999988764   46678888888888889999999999


Q ss_pred             HHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC
Q 038522          424 KKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP  501 (590)
Q Consensus       424 ~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p  501 (590)
                      ++.++.  .| +...|..+.-+..+.+.++++...|++..++  ++..+..|+.....+..+++++.|.+.|+.+ .+.|
T Consensus       418 ~Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~  493 (606)
T KOG0547|consen  418 QKAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEP  493 (606)
T ss_pred             HHHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcc
Confidence            999874  66 4566777776777899999999999999986  4455788899999999999999999999987 4445


Q ss_pred             C---------HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522          502 T---------ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME  564 (590)
Q Consensus       502 ~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (590)
                      +         +.....++.. ...+++..|+++++++++++|....+|..|+..-.++|+.++|+++|++..
T Consensus       494 ~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa  564 (606)
T KOG0547|consen  494 REHLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA  564 (606)
T ss_pred             ccccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4         2223333332 345899999999999999999999999999999999999999999999764

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.66  E-value=4.8e-16  Score=143.76  Aligned_cols=218  Identities=14%  Similarity=0.165  Sum_probs=114.9

Q ss_pred             HHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHH
Q 038522          343 ICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG--DKNVISWTSLIAGYAKHGYGHEAI  420 (590)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~  420 (590)
                      .+...++.+.|...++.+...+.. ++..+..++.. ...+++++|..+++..-  .+++..+..++..+.+.++++++.
T Consensus        53 La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~  130 (280)
T PF13429_consen   53 LAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAE  130 (280)
T ss_dssp             -------------------------------------------------------------------H-HHHTT-HHHHH
T ss_pred             cccccccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHH
Confidence            334455555555555555554433 45556666666 67888999988887764  356667778888899999999999


Q ss_pred             HHHHHHHHcC-CCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522          421 ELYKKMKHEG-MVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-  497 (590)
Q Consensus       421 ~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-  497 (590)
                      ++++++.... .+++...|..+...+.+.|+.++|.+.+++..+.   .|+ ......++..+...|+.+++.++++.. 
T Consensus       131 ~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~  207 (280)
T PF13429_consen  131 ELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLL  207 (280)
T ss_dssp             HHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            9999987543 2457778888888999999999999999999975   564 778889999999999999988888877 


Q ss_pred             -CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          498 -NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       498 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                       ..+.|+..|..+..++...|++++|+..++++.+.+|+|+.....++.++...|+.++|.++++++.+
T Consensus       208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred             HHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence             33556778899999999999999999999999999999999999999999999999999999887644

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.64  E-value=6.8e-13  Score=119.78  Aligned_cols=447  Identities=11%  Similarity=0.063  Sum_probs=272.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH-HHHhccCchhhHHHHHHHHHhcCCCCch----HHHHHHHHHH
Q 038522          102 MISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSAL-RACARMRWLQGGRMIQGSIQKGRFVENL----FVKSALLDLY  176 (590)
Q Consensus       102 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~  176 (590)
                      |.+-|..+.-..+|+..++-+.+....|+......-| ..+.+.+.+..|.+++...+..-...+.    .+.+.+.-.+
T Consensus       207 laqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtf  286 (840)
T KOG2003|consen  207 LAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTF  286 (840)
T ss_pred             HHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeE
Confidence            3445555566677788887777777667655443322 2345666777777777777765333222    2344444556


Q ss_pred             HhcCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH------------HHHHH--
Q 038522          177 AKCGWIEDAWILFERIER--KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL------------GSILR--  240 (590)
Q Consensus       177 ~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~------------~~ll~--  240 (590)
                      .+.|+++.|...|+...+  |+..+--.|+-++..-|+.++..+.|.+|..-...||..-|            +..+.  
T Consensus       287 iq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd  366 (840)
T KOG2003|consen  287 IQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKND  366 (840)
T ss_pred             EecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhH
Confidence            677777777777776654  55555444444555567777777777777654333332221            11111  


Q ss_pred             ---HhccCCChhHHHHHH---HHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCC--ccchHHHHHHHHhcC
Q 038522          241 ---ASVGGIELMKISQIH---DLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTD--IISCTALISGFARDD  312 (590)
Q Consensus       241 ---~~~~~~~~~~a~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~l~~~~~~~~  312 (590)
                         ...+.+. ..|++..   ..++.--+.|+...            -.+-..+.++.-....  ...--.-...+.+.|
T Consensus       367 ~lk~~ek~~k-a~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~  433 (840)
T KOG2003|consen  367 HLKNMEKENK-ADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHAELAIDLEINKAGELLKNG  433 (840)
T ss_pred             HHHHHHHhhh-hhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhcc
Confidence               0000000 0011000   00111011111100            0001111111110000  000011234577888


Q ss_pred             CChHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHH
Q 038522          313 NHSKEAFDLFKDMILKKMGIDDVILCLM--LNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANR  390 (590)
Q Consensus       313 ~~~~~a~~~~~~~~~~~~~p~~~~~~~l--l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  390 (590)
                      + ++.|+++++-+..+.-+.-+..-+.+  +.-.--..++..|.++-+......- .++.....-.+.-...|++++|.+
T Consensus       434 d-~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr-yn~~a~~nkgn~~f~ngd~dka~~  511 (840)
T KOG2003|consen  434 D-IEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR-YNAAALTNKGNIAFANGDLDKAAE  511 (840)
T ss_pred             C-HHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc-cCHHHhhcCCceeeecCcHHHHHH
Confidence            8 99999999988765433333222222  2222223466666666665554321 122222222233345699999999


Q ss_pred             HHHhcCCCCcchHHHHH---HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCC
Q 038522          391 AFDEMGDKNVISWTSLI---AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRI  467 (590)
Q Consensus       391 ~~~~~~~~~~~~~~~l~---~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  467 (590)
                      .|.+....|...-.+|.   ..+-..|+.++|++.|-++..- +.-+...+..+...|....+...|++++-...+  -+
T Consensus       512 ~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--li  588 (840)
T KOG2003|consen  512 FYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LI  588 (840)
T ss_pred             HHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cC
Confidence            99999987776544443   3566789999999999887653 344677778888899999999999999988874  35


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhc-C-CCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522          468 LPRAEHFSCVVDLFARRGQLESAYNMIRQM-N-IKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN  545 (590)
Q Consensus       468 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  545 (590)
                      +.|+.....|.+.|-+.|+-..|.+..-+- . ++-+..+...|...|....-.++++..++++.-++|........++.
T Consensus       589 p~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmias  668 (840)
T KOG2003|consen  589 PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIAS  668 (840)
T ss_pred             CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence            556889999999999999999998876554 3 44577888888888888888899999999999999954444445577


Q ss_pred             HHHhcCChHHHHHHHHHhhhc
Q 038522          546 IYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       546 ~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      ++.+.|+++.|..+++.+.++
T Consensus       669 c~rrsgnyqka~d~yk~~hrk  689 (840)
T KOG2003|consen  669 CFRRSGNYQKAFDLYKDIHRK  689 (840)
T ss_pred             HHHhcccHHHHHHHHHHHHHh
Confidence            888999999999999987664

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.61  E-value=6e-12  Score=117.17  Aligned_cols=479  Identities=13%  Similarity=0.032  Sum_probs=238.3

Q ss_pred             cccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhcc--CCCCCccchHHHHHHHH
Q 038522           30 PSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDR--MPERNVVSWTAMISGYA  107 (590)
Q Consensus        30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~--~~~~~~~~~~~li~~~~  107 (590)
                      ..-+..+.+-+..+.++..|.-+-+.....+  .|+..--.+.+++.-.|+.+.|..+...  +.+.|..+.......+.
T Consensus        16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le~~d~~cryL~~~~l~   93 (611)
T KOG1173|consen   16 LEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLEKRDIACRYLAAKCLV   93 (611)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhHHHHHHHHHHHH
Confidence            3456666676777778888887777776554  4555555677777778888888777655  44578888888888899


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 038522          108 QNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWI  187 (590)
Q Consensus       108 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  187 (590)
                      +..++++|..++..-.   +.-+...|-..=.  ...-+.+.+...      .+.......+-.-...|....+.++|..
T Consensus        94 ~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~~~------~~~~~essic~lRgk~y~al~n~~~ar~  162 (611)
T KOG1173|consen   94 KLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAGED------LMINLESSICYLRGKVYVALDNREEARD  162 (611)
T ss_pred             HHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccccc------ccccchhceeeeeeehhhhhccHHHHHH
Confidence            9999999998887321   1011111100000  000011111100      0011111112122334555566777777


Q ss_pred             HHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCC----CCChhhHHHHHHHh-ccCCChhHHHHHHHHHHHhC
Q 038522          188 LFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGM----KPDCFTLGSILRAS-VGGIELMKISQIHDLIIKLG  262 (590)
Q Consensus       188 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~-~~~~~~~~a~~~~~~~~~~~  262 (590)
                      .|.+....|+..+..+...-...  .-.+.+.++.+...+.    +.+....-.+.... ++..+. .....-.+..-.+
T Consensus       163 ~Y~~Al~~D~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~-~~~~r~~~~sl~~  239 (611)
T KOG1173|consen  163 KYKEALLADAKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNE-ESLTRNEDESLIG  239 (611)
T ss_pred             HHHHHHhcchhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccc-cccccCchhhhhh
Confidence            77776655555554433221111  1112222222221110    11111111111111 000000 0000000011112


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc---cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038522          263 LESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI---ISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCL  339 (590)
Q Consensus       263 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~  339 (590)
                      +..+..+...-.+-+...+++.+..++++.+.+.|+   ..+..-|..+...|+ ..+-..+=.++++. .+-       
T Consensus       240 l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~-~n~Lf~lsh~LV~~-yP~-------  310 (611)
T KOG1173|consen  240 LAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGK-SNKLFLLSHKLVDL-YPS-------  310 (611)
T ss_pred             hhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcc-cchHHHHHHHHHHh-CCC-------
Confidence            344444555555556666666666666666643332   333334445555555 44444444455433 122       


Q ss_pred             HHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCc
Q 038522          340 MLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHGYG  416 (590)
Q Consensus       340 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~  416 (590)
                                                  .+.+|-++.-.|...|+..+|++.|.+...-|.   ..|-....+|+-.+..
T Consensus       311 ----------------------------~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~Eh  362 (611)
T KOG1173|consen  311 ----------------------------KALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEH  362 (611)
T ss_pred             ----------------------------CCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchH
Confidence                                        344445555555555666666666665543222   3566666666666666


Q ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHH
Q 038522          417 HEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIR  495 (590)
Q Consensus       417 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~  495 (590)
                      ++|+..+....+. ++-....+--+.--|.+.++.+.|.++|....   ++.|+ +...+-+.-.....+.+.+|..+|+
T Consensus       363 dQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~  438 (611)
T KOG1173|consen  363 DQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQ  438 (611)
T ss_pred             HHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHH
Confidence            6666666555442 11111112222333555666666666666665   44443 4445555555555566666666665


Q ss_pred             hc--------CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          496 QM--------NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       496 ~~--------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ..        +..+ -..+++.|..+|.+.+.+++|+..+++++.+.|.++.+|.+++-+|...|+++.|++.|.+..-
T Consensus       439 ~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~  517 (611)
T KOG1173|consen  439 KALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA  517 (611)
T ss_pred             HHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence            54        0111 2234555666666666666666666666666666666666666666666666666666665443

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=1.8e-12  Score=125.52  Aligned_cols=245  Identities=12%  Similarity=0.067  Sum_probs=146.8

Q ss_pred             hcCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHH
Q 038522          310 RDDNHSKEAFDLFKDMILKKMGIDDVILC--LMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIAD  387 (590)
Q Consensus       310 ~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  387 (590)
                      +.|+ ++.|...+.++.+.  .|+.....  .....+...|+++.|...++.+.+..+. ++.....+...|.+.|++++
T Consensus       130 ~~g~-~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~  205 (398)
T PRK10747        130 QRGD-EARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSS  205 (398)
T ss_pred             HCCC-HHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHH
Confidence            3344 55555555555432  33322111  1133444455555555555555444432 44555566666666666666


Q ss_pred             HHHHHHhcCCCCc-----------chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHH
Q 038522          388 ANRAFDEMGDKNV-----------ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWE  456 (590)
Q Consensus       388 A~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  456 (590)
                      |.+++..+.+...           .+|..++.......+.+...++|+.+.+. .+.++.....+..++...|+.++|.+
T Consensus       206 a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~  284 (398)
T PRK10747        206 LLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQ  284 (398)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHH
Confidence            6666666553211           12223333333344455566666665443 34466677777788888888888888


Q ss_pred             HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          457 LFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      ++++..+.   .|+....  ++.+....++.+++++.+++. ...| |+..+..+...|...+++++|.+.++++++..|
T Consensus       285 ~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P  359 (398)
T PRK10747        285 IILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRP  359 (398)
T ss_pred             HHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            88777753   4444222  223334557888888888777 3344 445567777888888888888888888888888


Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          535 EKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       535 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                       +...+..++.++.+.|+.++|.+++++-..
T Consensus       360 -~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        360 -DAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             556677788888888888888888876544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.59  E-value=1.2e-12  Score=126.71  Aligned_cols=276  Identities=14%  Similarity=0.041  Sum_probs=166.2

Q ss_pred             ccchhHHHHHHHHHHHhcCCCchhHHHHH-HHHHHhcCChHHHHHHhccCCC--CCccchH--HHHHHHHhcCChHHHHH
Q 038522           43 KKAERQAHLIHAHIITNGYESNLHLSTKV-IIFYAKVGDVLSARKAFDRMPE--RNVVSWT--AMISGYAQNGYDENALL  117 (590)
Q Consensus        43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~~~~--~~~~~~~--~li~~~~~~~~~~~a~~  117 (590)
                      .|+++.|.+.+....+..  +++..+..+ .....+.|+++.|...|.++.+  |+...+.  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            466666665555443321  122222222 3333566666666666666554  3322222  22445666666667766


Q ss_pred             HHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCch-------HHHHHHHHHHHhcCChHHHHHHHh
Q 038522          118 VFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENL-------FVKSALLDLYAKCGWIEDAWILFE  190 (590)
Q Consensus       118 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~  190 (590)
                      .++++.+.. +-+......+...+.+.|+++++..++..+.+.+..++.       .+|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            666666543 223445555566666666777777666666665443222       123334444444455566666666


Q ss_pred             ccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCCh
Q 038522          191 RIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSN  267 (590)
Q Consensus       191 ~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  267 (590)
                      .+++   .++.....+...+...|+.++|.+++++..+.  +|+...  .++.+....++.+.+.+..+...+.. +.|.
T Consensus       254 ~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~  328 (398)
T PRK10747        254 NQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP  328 (398)
T ss_pred             hCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence            6653   35666777777788888888888888777663  444421  12333345577777777777777553 5566


Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc--cCCCccchHHHHHHHHhcCCChHHHHHHHHHHHH
Q 038522          268 KLTGSLIDVYAKYGSIRSAYQLYRSM--LKTDIISCTALISGFARDDNHSKEAFDLFKDMIL  327 (590)
Q Consensus       268 ~~~~~l~~~~~~~g~~~~a~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~  327 (590)
                      .....+...+.+.+++++|.+.|+..  ..|+...+..+...+.+.|+ .++|..++++-..
T Consensus       329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~-~~~A~~~~~~~l~  389 (398)
T PRK10747        329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHK-PEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHh
Confidence            66777788888888888888888877  34666667777777778888 8888888877643

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.58  E-value=2.7e-09  Score=101.26  Aligned_cols=523  Identities=12%  Similarity=0.107  Sum_probs=334.7

Q ss_pred             CCcccHHHHHHHhhcccchhHHHHHHHHHHHh-cCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHH
Q 038522           28 LDPSTYMSLLQFCIDKKAERQAHLIHAHIITN-GYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGY  106 (590)
Q Consensus        28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~  106 (590)
                      .-+..|...++....+|++..-...|+..+.. .+......|...+......|-++.+.+++++..+-++..-+..|..+
T Consensus       100 kmpRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~P~~~eeyie~L  179 (835)
T KOG2047|consen  100 KMPRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVAPEAREEYIEYL  179 (835)
T ss_pred             cCCHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            34456777777788888988888888887764 33444567888888777888888999999998876666788889999


Q ss_pred             HhcCChHHHHHHHHHHHHcC------CCCCHhhHHHHHHHHhccCchhhHH---HHHHHHHhcCCCCc--hHHHHHHHHH
Q 038522          107 AQNGYDENALLVFSAMLRSG------VRANQFTYSSALRACARMRWLQGGR---MIQGSIQKGRFVEN--LFVKSALLDL  175 (590)
Q Consensus       107 ~~~~~~~~a~~~~~~m~~~~------~~p~~~~~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~--~~~~~~l~~~  175 (590)
                      ++.++.++|-+.+.......      -+.+...|..+....++..+.-...   .++..+...  -+|  ...|.+|.+-
T Consensus       180 ~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdY  257 (835)
T KOG2047|consen  180 AKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADY  257 (835)
T ss_pred             HhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHH
Confidence            99999999999888875431      2345556666666555544433322   233333222  233  3478999999


Q ss_pred             HHhcCChHHHHHHHhccCCC--CcchHHHHHHHHHhc----------------CC------chHHHHHHHHHHHcCC---
Q 038522          176 YAKCGWIEDAWILFERIERK--DVVSWNAMIGGLAMQ----------------GF------NDDSFWLFRSMMRQGM---  228 (590)
Q Consensus       176 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~----------------~~------~~~a~~~~~~m~~~~~---  228 (590)
                      |.+.|.+++|..+|++..+.  .+.-++.+.++|++-                |+      ++-.+.-|+.+...+.   
T Consensus       258 YIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~l  337 (835)
T KOG2047|consen  258 YIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLL  337 (835)
T ss_pred             HHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHH
Confidence            99999999999999887642  222233333333321                11      1222333444333210   


Q ss_pred             --------CCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCC------ChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 038522          229 --------KPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLES------SNKLTGSLIDVYAKYGSIRSAYQLYRSML  294 (590)
Q Consensus       229 --------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  294 (590)
                              +-+..++..  +.-...|+..+....+.+.++.- .|      -...|..+.+.|-..|+++.|..+|++..
T Consensus       338 NsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~v-dP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~  414 (835)
T KOG2047|consen  338 NSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTV-DPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKAT  414 (835)
T ss_pred             HHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHcc-CcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhh
Confidence                    001111111  11223456677777777777542 22      22467888899999999999999999986


Q ss_pred             CCCc-------cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCC----------C-------CHHHHHHHHHHHhchhhh
Q 038522          295 KTDI-------ISCTALISGFARDDNHSKEAFDLFKDMILKKMG----------I-------DDVILCLMLNICANVASL  350 (590)
Q Consensus       295 ~~~~-------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~----------p-------~~~~~~~ll~~~~~~~~~  350 (590)
                      +.+-       .+|......-.+..+ ++.|++++++...-.-.          |       +...|+..+..-...|-+
T Consensus       415 ~V~y~~v~dLa~vw~~waemElrh~~-~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtf  493 (835)
T KOG2047|consen  415 KVPYKTVEDLAEVWCAWAEMELRHEN-FEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTF  493 (835)
T ss_pred             cCCccchHHHHHHHHHHHHHHHhhhh-HHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccH
Confidence            5433       345555555566777 89999988876532111          1       122344444555566778


Q ss_pred             HhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC----CCcc-hHHHHHHHHHh---cCCchHHHHH
Q 038522          351 NLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD----KNVI-SWTSLIAGYAK---HGYGHEAIEL  422 (590)
Q Consensus       351 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~-~~~~l~~~~~~---~~~~~~a~~~  422 (590)
                      +....+++.+++..+. ++.+-......+-...-++++.++|++-..    |++. .|++.+.-+.+   ....+.|..+
T Consensus       494 estk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdL  572 (835)
T KOG2047|consen  494 ESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDL  572 (835)
T ss_pred             HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            8888888888887765 333333344445566778999999998763    4443 67776655544   2368999999


Q ss_pred             HHHHHHcCCCCcHHHHHHHHHH--hhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522          423 YKKMKHEGMVPNDVTFLSLLFA--CSHTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLFARRGQLESAYNMIRQM-  497 (590)
Q Consensus       423 ~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-  497 (590)
                      |++..+ |.+|...-+-.|+.+  -.+-|....|+.++++...  ++++.  ..+|+..|.--...=-+..-..+|+++ 
T Consensus       573 FEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI  649 (835)
T KOG2047|consen  573 FEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI  649 (835)
T ss_pred             HHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence            999999 677754433333322  2356888899999999876  45554  457777776443332333344555555 


Q ss_pred             CCCCCHhHHHHHH---HHHHhcCCchHHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCChHHHHHHH
Q 038522          498 NIKPTASLWSAIL---GACSIYGNTSLGELAARNLFDMEP--EKSVNYVVLSNIYTAAGAWDNARKTR  560 (590)
Q Consensus       498 ~~~p~~~~~~~l~---~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~  560 (590)
                      ..-|+...-...+   ..-.+.|.++.|..+|.-..++-|  .++..|...=..-.+.|+-+.-.+.+
T Consensus       650 e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML  717 (835)
T KOG2047|consen  650 ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML  717 (835)
T ss_pred             HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence            3346555443333   233578999999999999988754  45667888888888999955444443

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.57  E-value=8.4e-13  Score=125.41  Aligned_cols=276  Identities=12%  Similarity=0.026  Sum_probs=188.3

Q ss_pred             hHHHHHHHHhccC--CC-ccchHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhchhhhHhHHHHH
Q 038522          283 IRSAYQLYRSMLK--TD-IISCTALISGFARDDNHSKEAFDLFKDMILKK--MGIDDVILCLMLNICANVASLNLGRQIH  357 (590)
Q Consensus       283 ~~~a~~~~~~~~~--~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~  357 (590)
                      ..+|...|..++.  +| ......+..+|....+ +++|..+|+.+.+..  ..-+..+|++.+..+-+.-    +..++
T Consensus       335 ~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~-Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L  409 (638)
T KOG1126|consen  335 CREALNLFEKLPSHHYNTGWVLSQLGRAYFELIE-YDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL  409 (638)
T ss_pred             HHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence            4455555555422  11 1233344555555555 666666666555431  1113345555554432211    11111


Q ss_pred             -HHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC---cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 038522          358 -AFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN---VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP  433 (590)
Q Consensus       358 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p  433 (590)
                       +.+.+. -+..+.+|.++.++|.-.++.+.|++.|++..+-|   ..+|+.+..-+.....+|.|...|+..+.  +.|
T Consensus       410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~  486 (638)
T KOG1126|consen  410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP  486 (638)
T ss_pred             HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence             112222 23367888888888888888888888888887543   45777777778888888999998888774  344


Q ss_pred             c-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHH
Q 038522          434 N-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAI  509 (590)
Q Consensus       434 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l  509 (590)
                      . -..|..+...|.+.++++.|.-.|+++.   .+.|. ......+...+.+.|+.++|+++++++ ...| |+..--.-
T Consensus       487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~  563 (638)
T KOG1126|consen  487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR  563 (638)
T ss_pred             hhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence            3 3456667778889999999999998888   45664 666677778888999999999999988 4344 45554555


Q ss_pred             HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      +..+...+++++|++.++++.++.|++...+..++.+|.+.|+.+.|+.-|--+.+-.++
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk  623 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK  623 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence            566677889999999999999999999999999999999999999999988877664443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=7.1e-11  Score=107.43  Aligned_cols=246  Identities=10%  Similarity=0.072  Sum_probs=184.5

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC--cchhHHHHHHHHHHhcCChHHHHHHH
Q 038522          315 SKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSS--YDAAVGNALIDMYAKSGEIADANRAF  392 (590)
Q Consensus       315 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~  392 (590)
                      .+++..-.......|+..+...-+....+.....++++|+.+|+.+.+..+-  -|..+|+.++-.--...++.---...
T Consensus       243 ~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v  322 (559)
T KOG1155|consen  243 HEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNV  322 (559)
T ss_pred             HHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHH
Confidence            5566666666666665555555555555556667777777777777776432  24555555543322211111111111


Q ss_pred             HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-C
Q 038522          393 DEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-R  470 (590)
Q Consensus       393 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~  470 (590)
                      -.+.+-.+.|.-++..-|.-.++.++|...|++..+.  .|. ...|+.+..-|....+...|++-+++..+   +.| |
T Consensus       323 ~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~D  397 (559)
T KOG1155|consen  323 SNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRD  397 (559)
T ss_pred             HHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchh
Confidence            2222334456666777788888999999999999984  675 45666677789999999999999999994   455 6


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      -..|-.|..+|.-.+.+.-|+-+|+++ .++| |...|.+|...|.+.++.++|+..|++++...-.+..++..|+.+|-
T Consensus       398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye  477 (559)
T KOG1155|consen  398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYE  477 (559)
T ss_pred             HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence            789999999999999999999999999 6666 77899999999999999999999999999888778899999999999


Q ss_pred             hcCChHHHHHHHHHhhh
Q 038522          549 AAGAWDNARKTRKLMEE  565 (590)
Q Consensus       549 ~~g~~~~A~~~~~~~~~  565 (590)
                      +.++.++|.+.+++..+
T Consensus       478 ~l~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  478 ELKDLNEAAQYYEKYVE  494 (559)
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            99999999999998776

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.55  E-value=4.4e-14  Score=130.68  Aligned_cols=252  Identities=12%  Similarity=0.069  Sum_probs=87.2

Q ss_pred             ccccccccCChHHHHHHhhhC-CCC-CCCcccH-HHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 038522            3 IVRANFKTGQLKQALKFSLSC-PDT-LLDPSTY-MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVG   79 (590)
Q Consensus         3 l~~~~~~~g~~~~a~~~~~~~-~~~-~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g   79 (590)
                      +...+.+.|++++|++++++. ... +|+...| ..+...+...++++.|...++.+.+.+ +-++..+..++.. ...+
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~~   91 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQDG   91 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-cccc
Confidence            345667777888888877544 333 3433333 444455666777778888888777765 3356666666666 5777


Q ss_pred             ChHHHHHHhccCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHHHhccCchhhHHHHHHH
Q 038522           80 DVLSARKAFDRMPE--RNVVSWTAMISGYAQNGYDENALLVFSAMLRSG-VRANQFTYSSALRACARMRWLQGGRMIQGS  156 (590)
Q Consensus        80 ~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  156 (590)
                      ++++|.+++...-+  ++...+...+..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|...++.
T Consensus        92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~  171 (280)
T PF13429_consen   92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK  171 (280)
T ss_dssp             --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            77777777766533  555666677777777788888777777766432 234556666666667777777777777777


Q ss_pred             HHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh
Q 038522          157 IQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCF  233 (590)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  233 (590)
                      .++.. +.|..+...++..+...|+.+++.++++...+   .|...|..+..++...|++++|+..|++....+ +.|..
T Consensus       172 al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~  249 (280)
T PF13429_consen  172 ALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPL  249 (280)
T ss_dssp             HHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HH
T ss_pred             HHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccccc
Confidence            77763 33456667777777777777776666655432   455667777777777777777777777766542 33555


Q ss_pred             hHHHHHHHhccCCChhHHHHHHHHH
Q 038522          234 TLGSILRASVGGIELMKISQIHDLI  258 (590)
Q Consensus       234 ~~~~ll~~~~~~~~~~~a~~~~~~~  258 (590)
                      ....+..++...|+.++|.++....
T Consensus       250 ~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  250 WLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             HHHHHHHHHT---------------
T ss_pred             ccccccccccccccccccccccccc
Confidence            5566666666666666666665544

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=9e-11  Score=106.75  Aligned_cols=321  Identities=11%  Similarity=0.066  Sum_probs=169.4

Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH--HHHH
Q 038522          162 FVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL--GSIL  239 (590)
Q Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~ll  239 (590)
                      ...|...+-...-.+-+.|....|+..|......-+..|.+.+....-..+.+.+..+    . .|.+.|..-+  -.+.
T Consensus       160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~l----~-~~l~~~~h~M~~~F~~  234 (559)
T KOG1155|consen  160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSIL----V-VGLPSDMHWMKKFFLK  234 (559)
T ss_pred             ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHHH----H-hcCcccchHHHHHHHH
Confidence            3445544444555566677778888887777654455555544433323232222221    1 1222221111  1233


Q ss_pred             HHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc------cchHHHHHHHHhcCC
Q 038522          240 RASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI------ISCTALISGFARDDN  313 (590)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~  313 (590)
                      .++......+++.+-.....+.|++.+...-+....+.-...++++|+.+|+++.+.|+      .+|+.++-  .++.+
T Consensus       235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~  312 (559)
T KOG1155|consen  235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDK  312 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhh
Confidence            44555556677777777777777776666666666666677777888888877755433      34444332  22211


Q ss_pred             ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHH
Q 038522          314 HSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFD  393 (590)
Q Consensus       314 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  393 (590)
                         ..+.++..-.-.--+--+.|...+.+-++-.++.++|..+|+...+.++. ....++.+.+-|....+...|..-++
T Consensus       313 ---skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYR  388 (559)
T KOG1155|consen  313 ---SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYR  388 (559)
T ss_pred             ---HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHH
Confidence               22223322221111222234444455555555666666666666655543 34445555555666666666666665


Q ss_pred             hcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC
Q 038522          394 EMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP  469 (590)
Q Consensus       394 ~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  469 (590)
                      ...+   .|-..|-.|.++|.-.+-+.-|+-.|++..+.  +| |+..|.+|.++|.+.++.++|++-|.+...-  -..
T Consensus       389 rAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~--~dt  464 (559)
T KOG1155|consen  389 RAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILL--GDT  464 (559)
T ss_pred             HHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc--ccc
Confidence            5543   23445555666666666666666666665552  44 4555666666666666666666666655542  122


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                      +...+..|.+.|-+.++.++|...|++.
T Consensus       465 e~~~l~~LakLye~l~d~~eAa~~yek~  492 (559)
T KOG1155|consen  465 EGSALVRLAKLYEELKDLNEAAQYYEKY  492 (559)
T ss_pred             chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            3455555666666666666665555443

>TIGR00540 hemY_coli hemY protein

Probab=99.54  E-value=4.4e-12  Score=123.55  Aligned_cols=278  Identities=13%  Similarity=0.021  Sum_probs=154.0

Q ss_pred             cccchhHHHHHHHHHHHhcCCCch-hHHHHHHHHHHhcCChHHHHHHhccCCC--CCcc--chHHHHHHHHhcCChHHHH
Q 038522           42 DKKAERQAHLIHAHIITNGYESNL-HLSTKVIIFYAKVGDVLSARKAFDRMPE--RNVV--SWTAMISGYAQNGYDENAL  116 (590)
Q Consensus        42 ~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~--~~~~li~~~~~~~~~~~a~  116 (590)
                      ..|+++.|.+.+....+..  |++ ..+-....++.+.|+.+.|...+....+  |+..  ..-.....+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            4456666666665554432  222 2223334455556666666666665432  3322  2222355555666666666


Q ss_pred             HHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHH-------HHHHHHHHhcCChHHHHHHH
Q 038522          117 LVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVK-------SALLDLYAKCGWIEDAWILF  189 (590)
Q Consensus       117 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~A~~~~  189 (590)
                      ..++.+.+.. +-+......+...+.+.|+++.+..++..+.+.++.++....       ..++..-......+...+.+
T Consensus       174 ~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       174 HGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            6666666543 223445555555666666666666666666665433222211       11111111222233444444


Q ss_pred             hccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH---HHHHHHhccCCChhHHHHHHHHHHHhCC
Q 038522          190 ERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL---GSILRASVGGIELMKISQIHDLIIKLGL  263 (590)
Q Consensus       190 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~  263 (590)
                      +..++   .+...+..+...+...|+.++|.+++++..+.  .||....   ..........++.+.+.+.++...+.. 
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~-  329 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV-  329 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC-
Confidence            44443   35666677777777777777777777777765  3433321   111112233466666767766666542 


Q ss_pred             CCCh--hHHHHHHHHHHhcCChHHHHHHHHh--c--cCCCccchHHHHHHHHhcCCChHHHHHHHHHHH
Q 038522          264 ESSN--KLTGSLIDVYAKYGSIRSAYQLYRS--M--LKTDIISCTALISGFARDDNHSKEAFDLFKDMI  326 (590)
Q Consensus       264 ~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~--~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~  326 (590)
                      +.|+  ....++...+.+.|++++|.+.|+.  .  ..|+...+..+...+.+.|+ .++|.+++++..
T Consensus       330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~-~~~A~~~~~~~l  397 (409)
T TIGR00540       330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGD-KAEAAAMRQDSL  397 (409)
T ss_pred             CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHH
Confidence            3334  5556777777788888888888873  3  35666667777777777777 788888777754

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.53  E-value=3e-11  Score=118.28  Aligned_cols=483  Identities=10%  Similarity=-0.025  Sum_probs=285.2

Q ss_pred             HHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCC----CccchHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038522           51 LIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPER----NVVSWTAMISGYAQNGYDENALLVFSAMLRSG  126 (590)
Q Consensus        51 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  126 (590)
                      .++..+...|+.|+..||..+|.-|+..|+.+.|- +|..|.-.    +...++.++.+....++.+.+.          
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence            46677888999999999999999999999999999 88888753    4557888888888888887765          


Q ss_pred             CCCCHhhHHHHHHHHhccCchhhH---HHHHHHHHh----cCCCCchHH--------------HHHHHHHHHhcCChHHH
Q 038522          127 VRANQFTYSSALRACARMRWLQGG---RMIQGSIQK----GRFVENLFV--------------KSALLDLYAKCGWIEDA  185 (590)
Q Consensus       127 ~~p~~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~----~~~~~~~~~--------------~~~l~~~~~~~~~~~~A  185 (590)
                       .|...||..++.+|...||+..-   ++.++.+..    .|+-....-              -...+......|.++.+
T Consensus        80 -ep~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaql  158 (1088)
T KOG4318|consen   80 -EPLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQL  158 (1088)
T ss_pred             -CCchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHH
Confidence             68999999999999999986653   332222222    222111111              11223334455666777


Q ss_pred             HHHHhccCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCC
Q 038522          186 WILFERIERK--DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGL  263 (590)
Q Consensus       186 ~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  263 (590)
                      ++++..++..  +. ....+++-+....  ....++....+...-.|++.+|..++++....|+.+.|..++.+|.+.|+
T Consensus       159 lkll~~~Pvsa~~~-p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf  235 (1088)
T KOG4318|consen  159 LKLLAKVPVSAWNA-PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF  235 (1088)
T ss_pred             HHHHhhCCcccccc-hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence            7777666531  11 1111233222222  22233332222211158999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhc----cCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038522          264 ESSNKLTGSLIDVYAKYGSIRSAYQLYRSM----LKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCL  339 (590)
Q Consensus       264 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~  339 (590)
                      +.+..-|-.|+.+   .++...++.+++.|    +.|+..|+...+..+..++. ...        .+.| .+....+++
T Consensus       236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~-t~~--------~~e~-sq~~hg~tA  302 (1088)
T KOG4318|consen  236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ-TKY--------GEEG-SQLAHGFTA  302 (1088)
T ss_pred             Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh-hhh--------cccc-cchhhhhhH
Confidence            9998888777655   77777778777777    56888888877777766433 111        1122 222222222


Q ss_pred             HHHHHhchh-----hhHhH-----HHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC-------Ccch
Q 038522          340 MLNICANVA-----SLNLG-----RQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK-------NVIS  402 (590)
Q Consensus       340 ll~~~~~~~-----~~~~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~  402 (590)
                      -+..-.-.|     .++.-     ...+....-.|+.....++....... ..|+-+...++-..+..|       ++..
T Consensus       303 avrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~-hQgk~e~veqlvg~l~npt~r~s~~~V~a  381 (1088)
T KOG4318|consen  303 AVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLR-HQGKGEEVEQLVGQLLNPTLRDSGQNVDA  381 (1088)
T ss_pred             HHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHH-HcCCCchHHHHHhhhcCCccccCcchHHH
Confidence            222221122     22111     11122222244444445544444332 267777777777777643       4445


Q ss_pred             HHHHHHHHHhcCCchHHHHHHH--HHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHH-----Hhhc-C----CCCC
Q 038522          403 WTSLIAGYAKHGYGHEAIELYK--KMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDM-----INKY-R----ILPR  470 (590)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~-----~~~~-~----~~~~  470 (590)
                      |..++.-|.+.-+..-...++.  +..+..  .+....-.+.....+. +...+..-+..+     .+.+ .    ..|-
T Consensus       382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~~--l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~i  458 (1088)
T KOG4318|consen  382 FGALLRQYFRRIERHICSRIYYAGQGLSLN--LNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLI  458 (1088)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence            6666655554322222211111  222110  0111101111111111 111111111111     1110 0    0111


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC---CCcchHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEP---EKSVNYVVLSNIY  547 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~~~~~~~l~~~~  547 (590)
                      ...-+.++..+.+.-+..+++..-++....--+..|..|++-+..+...+.|..+..++...+.   -+..-+..+.+.+
T Consensus       459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL  538 (1088)
T KOG4318|consen  459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLLFAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLL  538 (1088)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHH
Confidence            2345566777777777777776555541111126788999999999999999999998876553   2344578889999


Q ss_pred             HhcCChHHHHHHHHHhhh
Q 038522          548 TAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       548 ~~~g~~~~A~~~~~~~~~  565 (590)
                      .+.+...++..+++++.+
T Consensus       539 ~r~~~l~dl~tiL~e~ks  556 (1088)
T KOG4318|consen  539 QRLAILYDLSTILYEDKS  556 (1088)
T ss_pred             HHhHHHHHHHHHHhhhhH
Confidence            999999999999999987

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.52  E-value=1.8e-12  Score=123.22  Aligned_cols=248  Identities=12%  Similarity=0.124  Sum_probs=195.2

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC--cchhHHHHHHHHHHhcCChHHHHHHH
Q 038522          315 SKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSS--YDAAVGNALIDMYAKSGEIADANRAF  392 (590)
Q Consensus       315 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~  392 (590)
                      ..+|+..|.... ..+.-+......+..+|...+++++++.+|+.+.+..+-  -+..+|...+--+-+.-...---+-+
T Consensus       335 ~~~A~~~~~klp-~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~L  413 (638)
T KOG1126|consen  335 CREALNLFEKLP-SHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDL  413 (638)
T ss_pred             HHHHHHHHHhhH-HhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHH
Confidence            678999999844 334445577788899999999999999999999875432  25566666554332211111111111


Q ss_pred             HhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-
Q 038522          393 DEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-  470 (590)
Q Consensus       393 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-  470 (590)
                      -+.....+.+|-++..+|.-+++.+.|++.|++..+  +.| ...+|+.+..-+.....+|.|...|+...   ++.|. 
T Consensus       414 i~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al---~~~~rh  488 (638)
T KOG1126|consen  414 IDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL---GVDPRH  488 (638)
T ss_pred             HhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---cCCchh
Confidence            122234678999999999999999999999999997  467 57788888878888899999999999888   44443 


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA-SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      -..|-.+.-.|.+.++++.|+-.|+++ .+.|.. .....+...+.+.|+.++|+++++++..++|.|+-.-+..+.++.
T Consensus       489 YnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~  568 (638)
T KOG1126|consen  489 YNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILF  568 (638)
T ss_pred             hHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHH
Confidence            334556778899999999999999999 777754 455777788889999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhhhcCC
Q 038522          549 AAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       549 ~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ..+++++|++.++++++.-+
T Consensus       569 ~~~~~~eal~~LEeLk~~vP  588 (638)
T KOG1126|consen  569 SLGRYVEALQELEELKELVP  588 (638)
T ss_pred             hhcchHHHHHHHHHHHHhCc
Confidence            99999999999999987544

>TIGR00540 hemY_coli hemY protein

Probab=99.52  E-value=3.9e-11  Score=116.94  Aligned_cols=290  Identities=10%  Similarity=0.009  Sum_probs=171.4

Q ss_pred             hcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHH
Q 038522          209 MQGFNDDSFWLFRSMMRQGMKPDCF-TLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAY  287 (590)
Q Consensus       209 ~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  287 (590)
                      ..|+++.|.+.+.+..+.  .|+.. .+.....+..+.|+.+.+.+.+....+....+...+.......+...|+++.|.
T Consensus        96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al  173 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR  173 (409)
T ss_pred             hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence            456667776666655443  33322 223334445556666666666666654431222223333455566666666666


Q ss_pred             HHHHhccC--C-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhC
Q 038522          288 QLYRSMLK--T-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQ  364 (590)
Q Consensus       288 ~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  364 (590)
                      ..++.+.+  | +......+...+...|+ +++|.+++..+.+.+..++. .+..+-.                      
T Consensus       174 ~~l~~l~~~~P~~~~~l~ll~~~~~~~~d-~~~a~~~l~~l~k~~~~~~~-~~~~l~~----------------------  229 (409)
T TIGR00540       174 HGVDKLLEMAPRHKEVLKLAEEAYIRSGA-WQALDDIIDNMAKAGLFDDE-EFADLEQ----------------------  229 (409)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHhh-HHHHHHHHHHHHHcCCCCHH-HHHHHHH----------------------
Confidence            66666532  2 33445555566666666 66666666666655432221 1110000                      


Q ss_pred             CCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHH---H
Q 038522          365 SSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVT---F  438 (590)
Q Consensus       365 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~  438 (590)
                           ..+..++..-......+...+.++...+   .++..+..+...+...|++++|.+.+++..+.  .||...   .
T Consensus       230 -----~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~  302 (409)
T TIGR00540       230 -----KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLP  302 (409)
T ss_pred             -----HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhH
Confidence                 0001111111112223444455555542   36677777888888888888898888888875  444332   1


Q ss_pred             HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh--c-CCCCCHhHHHHHHHHHHh
Q 038522          439 LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQ--M-NIKPTASLWSAILGACSI  515 (590)
Q Consensus       439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~--~-~~~p~~~~~~~l~~~~~~  515 (590)
                      ..........++.+.+.+.++...+.....|+.....++...+.+.|++++|.+.|+.  . ...|++..+..+...+.+
T Consensus       303 ~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~  382 (409)
T TIGR00540       303 LCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQ  382 (409)
T ss_pred             HHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHH
Confidence            1122223445777888888888886522222225667888889999999999999994  3 668888888889999999


Q ss_pred             cCCchHHHHHHHHHhc
Q 038522          516 YGNTSLGELAARNLFD  531 (590)
Q Consensus       516 ~~~~~~a~~~~~~~~~  531 (590)
                      .|+.++|.++|++.++
T Consensus       383 ~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       383 AGDKAEAAAMRQDSLG  398 (409)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            9999999999998864

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.51  E-value=2.1e-10  Score=100.68  Aligned_cols=445  Identities=14%  Similarity=0.057  Sum_probs=218.4

Q ss_pred             HHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChH
Q 038522           37 LQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDE  113 (590)
Q Consensus        37 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~  113 (590)
                      +.-+....++..|..+++.-...+-+....+-.-+...+.+.|++++|...+..+.+   ++...+-.|.-++.-.|.+.
T Consensus        29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHH
Confidence            444555667777877777655443222223334455667778888888888877654   55556666666666667777


Q ss_pred             HHHHHHHHHHHcCCCCCHhhH-HHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcc
Q 038522          114 NALLVFSAMLRSGVRANQFTY-SSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERI  192 (590)
Q Consensus       114 ~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  192 (590)
                      +|..+-...      |+.... ..++...-+.++-+.-..+.+.+.+.     ..-..+|.+..-..-++.+|+++++++
T Consensus       109 eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv  177 (557)
T KOG3785|consen  109 EAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV  177 (557)
T ss_pred             HHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            777665443      232333 33344445566666655555555432     223334445555555778888888888


Q ss_pred             CCCC--cchHHH-HHHHHHhcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChh
Q 038522          193 ERKD--VVSWNA-MIGGLAMQGFNDDSFWLFRSMMRQGMKPDCF-TLGSILRASVGGIELMKISQIHDLIIKLGLESSNK  268 (590)
Q Consensus       193 ~~~~--~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  268 (590)
                      ...+  -...|. +.-+|.+..-++-+.++++-....  .||+. ..|.......+.-+-..|++-.+.+.+.+-..   
T Consensus       178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---  252 (557)
T KOG3785|consen  178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---  252 (557)
T ss_pred             HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence            7533  333343 334667777788888888777665  44433 33332222223222222333333333322111   


Q ss_pred             HHHHHHHHHHhc-----CChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038522          269 LTGSLIDVYAKY-----GSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNI  343 (590)
Q Consensus       269 ~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~  343 (590)
                       |- .+.-.++.     ..-+.|++++-.+.+.-+..--.++--|.+.++ +.+|..+.+++.  ...|-....-.++.+
T Consensus       253 -~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~d-VqeA~~L~Kdl~--PttP~EyilKgvv~a  327 (557)
T KOG3785|consen  253 -YP-FIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQND-VQEAISLCKDLD--PTTPYEYILKGVVFA  327 (557)
T ss_pred             -ch-hHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccccc-HHHHHHHHhhcC--CCChHHHHHHHHHHH
Confidence             10 11122221     234556666555543333334445555677777 888888877763  112222222222211


Q ss_pred             -----HhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchH
Q 038522          344 -----CANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHE  418 (590)
Q Consensus       344 -----~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  418 (590)
                           ......+.-|.+.+...-+.+..-|                              .+..-.++...+.-..++++
T Consensus       328 alGQe~gSreHlKiAqqffqlVG~Sa~ecD------------------------------TIpGRQsmAs~fFL~~qFdd  377 (557)
T KOG3785|consen  328 ALGQETGSREHLKIAQQFFQLVGESALECD------------------------------TIPGRQSMASYFFLSFQFDD  377 (557)
T ss_pred             HhhhhcCcHHHHHHHHHHHHHhcccccccc------------------------------cccchHHHHHHHHHHHHHHH
Confidence                 1112223333333433333322211                              11222333344444444555


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522          419 AIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMN  498 (590)
Q Consensus       419 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  498 (590)
                      ++..++.+..--...|...+ .+.++.+..|++.+|.++|-.+... .++.+..-...|.++|.+.|+++-|.+++-++.
T Consensus       378 Vl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~-~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~  455 (557)
T KOG3785|consen  378 VLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP-EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN  455 (557)
T ss_pred             HHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence            55555554443222222222 3445555555666665555555422 222222222234455555566666666555553


Q ss_pred             CCCCHhH-HHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          499 IKPTASL-WSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       499 ~~p~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      -+.+..+ ...+.+-|.+.+++--|-+.|..+..++|
T Consensus       456 t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP  492 (557)
T KOG3785|consen  456 TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDP  492 (557)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCC
Confidence            2222222 23333455555555555555555555555

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=7.3e-11  Score=102.37  Aligned_cols=120  Identities=13%  Similarity=0.104  Sum_probs=72.5

Q ss_pred             HhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhC-CCCC--hhHHHHHHHHHHhcCChH
Q 038522          208 AMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLG-LESS--NKLTGSLIDVYAKYGSIR  284 (590)
Q Consensus       208 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~  284 (590)
                      .-..++++|.++|-+|.+.. +.+..+-.++.+.+.+.|..+.|.++++.+.++. .+.+  ......|..-|...|-+|
T Consensus        46 LLs~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          46 LLSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             HhhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            34568889999999888642 2334445567777778888888888888777642 1111  112334555666677777


Q ss_pred             HHHHHHHhccCCCc---cchHHHHHHHHhcCCChHHHHHHHHHHHHcC
Q 038522          285 SAYQLYRSMLKTDI---ISCTALISGFARDDNHSKEAFDLFKDMILKK  329 (590)
Q Consensus       285 ~a~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~  329 (590)
                      .|+.+|..+.+.+.   .....|+..|-...+ +++|++.-.++...+
T Consensus       125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~tre-W~KAId~A~~L~k~~  171 (389)
T COG2956         125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATRE-WEKAIDVAERLVKLG  171 (389)
T ss_pred             HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHcC
Confidence            77777766654222   234445555555555 666666555555443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.50  E-value=2.2e-10  Score=102.72  Aligned_cols=285  Identities=10%  Similarity=0.031  Sum_probs=156.6

Q ss_pred             cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 038522          210 QGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQL  289 (590)
Q Consensus       210 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  289 (590)
                      .|++..|.++..+-.+.+-. ....|..-..+.-+.|+.+.+-.++.+..+..-.++..+.-+..+.....|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            56666666666665554422 23344445555666677777777766666654355555556666666677777777666


Q ss_pred             HHhcc---CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC
Q 038522          290 YRSML---KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSS  366 (590)
Q Consensus       290 ~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  366 (590)
                      .+++.   ..++........+|.+.|+ +.....++..+.+.|.-.++..-.                            
T Consensus       176 v~~ll~~~pr~~~vlrLa~r~y~~~g~-~~~ll~~l~~L~ka~~l~~~e~~~----------------------------  226 (400)
T COG3071         176 VDQLLEMTPRHPEVLRLALRAYIRLGA-WQALLAILPKLRKAGLLSDEEAAR----------------------------  226 (400)
T ss_pred             HHHHHHhCcCChHHHHHHHHHHHHhcc-HHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence            65552   2345556666667777777 777777777777666444332100                            


Q ss_pred             cchhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522          367 YDAAVGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF  443 (590)
Q Consensus       367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  443 (590)
                      ....+++.+++-....+..+.-...|+...   +.++..-.+++.-+.+.|+.++|.++..+..+.+..|+..    ..-
T Consensus       227 le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~  302 (400)
T COG3071         227 LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLI  302 (400)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHH
Confidence            012223333333333333333344455444   2344455555566666666666666666666655555411    122


Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHH
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLG  522 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a  522 (590)
                      .+.+.++...-++..+.-.+.++..|  ..+.+|...|.+.+.+.+|.+.|+.. ...|+..+|+.+..++.+.|+.+.|
T Consensus       303 ~~l~~~d~~~l~k~~e~~l~~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A  380 (400)
T COG3071         303 PRLRPGDPEPLIKAAEKWLKQHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEA  380 (400)
T ss_pred             hhcCCCCchHHHHHHHHHHHhCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHH
Confidence            34555566555555555555433322  45555555555666666666655554 5555555555555555555666555


Q ss_pred             HHHHHHHh
Q 038522          523 ELAARNLF  530 (590)
Q Consensus       523 ~~~~~~~~  530 (590)
                      .+..++.+
T Consensus       381 ~~~r~e~L  388 (400)
T COG3071         381 EQVRREAL  388 (400)
T ss_pred             HHHHHHHH
Confidence            55555554

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.48  E-value=1.9e-10  Score=105.39  Aligned_cols=337  Identities=10%  Similarity=-0.018  Sum_probs=179.7

Q ss_pred             ccccccCChHHHHHHhhhCCCCCCC-cccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHH
Q 038522            5 RANFKTGQLKQALKFSLSCPDTLLD-PSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLS   83 (590)
Q Consensus         5 ~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~   83 (590)
                      +-+.++|++++|+++|.++....|+ +.-|.....+|...|+++.+.+.-...++.+ +.-+..+.....++-..|++++
T Consensus       123 N~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~E~lg~~~e  201 (606)
T KOG0547|consen  123 NKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAHEQLGKFDE  201 (606)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHHHhhccHHH
Confidence            4577899999999999999667777 7777888888889999999888877777654 2234566666777777888888


Q ss_pred             HHHHhccCCCCCccchHHHHHHHHhcCCh--------HHHHHHHHHHHH-cC--CCCCHhhHHHHHHHHhccCchhhHHH
Q 038522           84 ARKAFDRMPERNVVSWTAMISGYAQNGYD--------ENALLVFSAMLR-SG--VRANQFTYSSALRACARMRWLQGGRM  152 (590)
Q Consensus        84 a~~~~~~~~~~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~--~~p~~~~~~~ll~~~~~~~~~~~a~~  152 (590)
                      |+.=         .|-.++...+-.+.-.        ..|....++-.+ ++  +-|+.....+.++.+...-.      
T Consensus       202 al~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~------  266 (606)
T KOG0547|consen  202 ALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPK------  266 (606)
T ss_pred             HHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccccc------
Confidence            7531         1112222222111111        112222222222 22  34665555554444321100      


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHhc-CChHHHHHHHhccC-----CC-----Ccc------hHHHHHHHHHhcCCchH
Q 038522          153 IQGSIQKGRFVENLFVKSALLDLYAKC-GWIEDAWILFERIE-----RK-----DVV------SWNAMIGGLAMQGFNDD  215 (590)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~-----~~-----~~~------~~~~li~~~~~~~~~~~  215 (590)
                        ..+...+...|...-..+-..+... ..+.+|...+.+-.     .+     |..      +...-...+.-.|+.-.
T Consensus       267 --~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~  344 (606)
T KOG0547|consen  267 --PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLG  344 (606)
T ss_pred             --ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchh
Confidence              0000000000111111111111110 12222322222111     01     111      11111122345677788


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC
Q 038522          216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK  295 (590)
Q Consensus       216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  295 (590)
                      |.+-|+..+.....++. .|..+...|....+.++..+.|+...+.+ +.++.+|..-...+.-.++++.|..-|++...
T Consensus       345 a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~  422 (606)
T KOG0547|consen  345 AQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKAIS  422 (606)
T ss_pred             hhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh
Confidence            88888888766433322 26666667778888888888888777765 44555666666666666777777777776643


Q ss_pred             C---CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHh
Q 038522          296 T---DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKY  363 (590)
Q Consensus       296 ~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  363 (590)
                      -   +...|-.+-.+..+.+. +++++..|++.+.+ ++.-+..|+.....+...++++.|.+.++..++.
T Consensus       423 L~pe~~~~~iQl~~a~Yr~~k-~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  423 LDPENAYAYIQLCCALYRQHK-IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             cChhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            3   23445555555556666 77777777776654 2333445555555555555555555555555543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=2.2e-11  Score=110.11  Aligned_cols=198  Identities=12%  Similarity=0.087  Sum_probs=165.7

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA  444 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  444 (590)
                      ....+..+...+...|++++|...+++..+  | +...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            456677788899999999999999998763  3 45577888899999999999999999998863 3456677788888


Q ss_pred             hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHH
Q 038522          445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLG  522 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a  522 (590)
                      +...|++++|.+.+++..+..........+..+...+...|++++|...+++. ...| +...+..+...+...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  188 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA  188 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence            99999999999999999864222234556777888999999999999999998 4344 466788888999999999999


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      ...++++.+..|.++..+..++.++...|+.++|..+.+.+.+.
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            99999999988888888889999999999999999998877653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.45  E-value=3.4e-10  Score=101.48  Aligned_cols=219  Identities=12%  Similarity=0.094  Sum_probs=158.2

Q ss_pred             HHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-----------cchHHHHH
Q 038522          339 LMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN-----------VISWTSLI  407 (590)
Q Consensus       339 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----------~~~~~~l~  407 (590)
                      +........|+.+.|..-...+.+.++. .+.+......+|.+.|++.....++.++.+..           ..+|+.++
T Consensus       158 trarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL  236 (400)
T COG3071         158 TRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLL  236 (400)
T ss_pred             HHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHH
Confidence            3333344444444444444444444333 34444556666666677766666666665422           23677788


Q ss_pred             HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 038522          408 AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQL  487 (590)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  487 (590)
                      +-....+..+.-...|++...+ .+-++..-..++.-+...|+.++|.++.++..++ +..|+   ...+ -...+-++.
T Consensus       237 ~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~---L~~~-~~~l~~~d~  310 (400)
T COG3071         237 QQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPR---LCRL-IPRLRPGDP  310 (400)
T ss_pred             HHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChh---HHHH-HhhcCCCCc
Confidence            7777777777777788887664 4556777778888899999999999999999987 66665   1122 234566777


Q ss_pred             HHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          488 ESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       488 ~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ..=++..++.  ..+.++..+.+|...|.+++.+.+|...++.+++..| +...|.-++.++.+.|+.++|.+..++..-
T Consensus       311 ~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~A~~~r~e~L~  389 (400)
T COG3071         311 EPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEEAEQVRREALL  389 (400)
T ss_pred             hHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            7766666665  3344557889999999999999999999999999999 889999999999999999999999998764

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.43  E-value=9.7e-09  Score=99.83  Aligned_cols=127  Identities=15%  Similarity=0.111  Sum_probs=103.2

Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHh
Q 038522          438 FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSI  515 (590)
Q Consensus       438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~  515 (590)
                      |......+.+.++.++|..-+.+..+-  .+.....|......+...|+.++|.+.|... .+.| ++.+..++...+.+
T Consensus       653 wllaa~~~~~~~~~~~a~~CL~Ea~~~--~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle  730 (799)
T KOG4162|consen  653 WLLAADLFLLSGNDDEARSCLLEASKI--DPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLE  730 (799)
T ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHhc--chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            344455667777888888777777632  2334566777777888899999999998887 5566 45678889999999


Q ss_pred             cCCchHHHH--HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          516 YGNTSLGEL--AARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       516 ~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      .|+...|..  ++..+++++|.++.+|+.|+.++.+.|+.++|.+.|+...+-
T Consensus       731 ~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  731 LGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             hCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            999988888  999999999999999999999999999999999999988773

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.42  E-value=7.6e-09  Score=93.08  Aligned_cols=307  Identities=10%  Similarity=0.027  Sum_probs=200.4

Q ss_pred             CCChhhHHHHHHHhcc--CCChhHHHHHHHHHHH-hCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHH-
Q 038522          229 KPDCFTLGSILRASVG--GIELMKISQIHDLIIK-LGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTAL-  304 (590)
Q Consensus       229 ~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l-  304 (590)
                      +|...+....+.+++.  .++-..+...+-.+.. .-++.+......+...+...|+.++|...|++...-|+.+...+ 
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD  270 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMD  270 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHH
Confidence            4444444444554433  3333333333333333 34677788888999999999999999999988754444332221 


Q ss_pred             --HHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc
Q 038522          305 --ISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS  382 (590)
Q Consensus       305 --~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  382 (590)
                        ...+.+.|+ .+....+...+.... .-....|-.-.......++++.|..+-+..++.... +...+-.-...+...
T Consensus       271 ~Ya~LL~~eg~-~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~  347 (564)
T KOG1174|consen  271 LYAVLLGQEGG-CEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIAL  347 (564)
T ss_pred             HHHHHHHhccC-HhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhc
Confidence              222344555 777766666665332 112222222233344567777777777766665533 344444445667778


Q ss_pred             CChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHH-HHhh-ccCChHHHHHH
Q 038522          383 GEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLL-FACS-HTGLTCEGWEL  457 (590)
Q Consensus       383 ~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~~~~~~a~~~  457 (590)
                      |+.++|.-.|+....   -+..+|..|+.+|...|++.+|..+-+...+. +..+..+...+. ..|. ....-++|.++
T Consensus       348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf  426 (564)
T KOG1174|consen  348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKF  426 (564)
T ss_pred             cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHH
Confidence            888888888887653   36678888888888888888888877776654 344556655552 3333 23345778888


Q ss_pred             HHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          458 FTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       458 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                      ++.-.   .+.|+ ....+.+...+.+.|..+.++.++++. ...||....+.|...+...+.+.+|...|..++.++|+
T Consensus       427 ~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  427 AEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             HHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence            87776   44666 456677778888888888888888887 66788888888888888888888888888888888886


Q ss_pred             CcchHHH
Q 038522          536 KSVNYVV  542 (590)
Q Consensus       536 ~~~~~~~  542 (590)
                      +..+...
T Consensus       504 ~~~sl~G  510 (564)
T KOG1174|consen  504 SKRTLRG  510 (564)
T ss_pred             chHHHHH
Confidence            6544433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.42  E-value=7.5e-08  Score=91.75  Aligned_cols=539  Identities=12%  Similarity=0.078  Sum_probs=329.0

Q ss_pred             HHHHHhhhC-CCCCCCcccHHHHHHHh--------hcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHH
Q 038522           15 QALKFSLSC-PDTLLDPSTYMSLLQFC--------IDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSAR   85 (590)
Q Consensus        15 ~a~~~~~~~-~~~~~~~~~~~~ll~~~--------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~   85 (590)
                      +-.-+|+++ ...+-+...|...|+.=        -....+......|+...-.- ..=+..|..-+....++|++....
T Consensus        44 ~~~~lYERal~~lp~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~m-HkmpRIwl~Ylq~l~~Q~~iT~tR  122 (835)
T KOG2047|consen   44 QRNLLYERALKELPGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFM-HKMPRIWLDYLQFLIKQGLITRTR  122 (835)
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHhcchHHHHH
Confidence            344567777 55555666666666321        11223444555555443321 233466777788888999999999


Q ss_pred             HHhccCCC-----CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhc
Q 038522           86 KAFDRMPE-----RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKG  160 (590)
Q Consensus        86 ~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  160 (590)
                      ..|+....     .....|...+......+-++-++.++++.++  +.|  ..-.--|.-++..+++++|.+.+...+..
T Consensus       123 ~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk--~~P--~~~eeyie~L~~~d~~~eaa~~la~vln~  198 (835)
T KOG2047|consen  123 RTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK--VAP--EAREEYIEYLAKSDRLDEAAQRLATVLNQ  198 (835)
T ss_pred             HHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh--cCH--HHHHHHHHHHHhccchHHHHHHHHHhcCc
Confidence            99987543     3456788889988888999999999999987  334  44677788889999999999999888764


Q ss_pred             C------CCCchHHHHHHHHHHHhcCCh---HHHHHHHhccCC--CC--cchHHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 038522          161 R------FVENLFVKSALLDLYAKCGWI---EDAWILFERIER--KD--VVSWNAMIGGLAMQGFNDDSFWLFRSMMRQG  227 (590)
Q Consensus       161 ~------~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~--~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  227 (590)
                      .      .+.+...|..+-+..++.-+.   -....+++....  +|  ...|.+|.+-|.+.|.+++|-++|++.... 
T Consensus       199 d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~-  277 (835)
T KOG2047|consen  199 DEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT-  277 (835)
T ss_pred             hhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-
Confidence            2      244555666666666555332   223444444433  22  356999999999999999999999998765 


Q ss_pred             CCCChhhHHHHHHHhccCCC----------------------hhHHHHHHHHHHHhC-----------CCCChhHHHHHH
Q 038522          228 MKPDCFTLGSILRASVGGIE----------------------LMKISQIHDLIIKLG-----------LESSNKLTGSLI  274 (590)
Q Consensus       228 ~~p~~~~~~~ll~~~~~~~~----------------------~~~a~~~~~~~~~~~-----------~~~~~~~~~~l~  274 (590)
                       ..+..-|..+.++|+.-..                      ++....-|+.+....           -+.++..|..- 
T Consensus       278 -v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kR-  355 (835)
T KOG2047|consen  278 -VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKR-  355 (835)
T ss_pred             -heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhh-
Confidence             4455555555555543211                      122222233333221           01112222211 


Q ss_pred             HHHHhcCChHHHHHHHHhcc---CC------CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 038522          275 DVYAKYGSIRSAYQLYRSML---KT------DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGID---DVILCLMLN  342 (590)
Q Consensus       275 ~~~~~~g~~~~a~~~~~~~~---~~------~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~  342 (590)
                       .-+..|+..+-...+.+.+   .|      -...|..+...|-..++ .+.|..+|++...-..+--   ..+|..-..
T Consensus       356 -V~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~-l~~aRvifeka~~V~y~~v~dLa~vw~~wae  433 (835)
T KOG2047|consen  356 -VKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD-LDDARVIFEKATKVPYKTVEDLAEVWCAWAE  433 (835)
T ss_pred             -hhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc-HHHHHHHHHHhhcCCccchHHHHHHHHHHHH
Confidence             1222345555555565552   11      12346666777777788 8888888888765432211   122333333


Q ss_pred             HHhchhhhHhHHHHHHHHHHhCCC-----------c------chhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHH
Q 038522          343 ICANVASLNLGRQIHAFAFKYQSS-----------Y------DAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTS  405 (590)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~~~~~-----------~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~  405 (590)
                      .=.+..+++.|..+.+.+....-.           +      +..++..+++.....|-++....+|+++.+-.+.|=..
T Consensus       434 mElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqi  513 (835)
T KOG2047|consen  434 MELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQI  513 (835)
T ss_pred             HHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHH
Confidence            334455666777666655332111           1      33445555666666777888888888777533333222


Q ss_pred             HHH---HHHhcCCchHHHHHHHHHHHcCCCCcH-HHHHHHHHHhhc---cCChHHHHHHHHHHHhhcCCCCChh--HHHH
Q 038522          406 LIA---GYAKHGYGHEAIELYKKMKHEGMVPND-VTFLSLLFACSH---TGLTCEGWELFTDMINKYRILPRAE--HFSC  476 (590)
Q Consensus       406 l~~---~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~  476 (590)
                      ++.   -+-.+.-++++.++|++-+..=-.|+. ..|+..+.-+.+   .-.++.|..+|++..+  +.+|...  .|-.
T Consensus       514 i~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~--~Cpp~~aKtiyLl  591 (835)
T KOG2047|consen  514 IINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD--GCPPEHAKTIYLL  591 (835)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh--cCCHHHHHHHHHH
Confidence            222   223445677888888776655334543 355555554442   3358999999999997  5565422  2322


Q ss_pred             HHHHHHhcCChHHHHHHHHhc--CCCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch--HHHHHHHHHhc
Q 038522          477 VVDLFARRGQLESAYNMIRQM--NIKPT--ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN--YVVLSNIYTAA  550 (590)
Q Consensus       477 l~~~~~~~g~~~~A~~~~~~~--~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~  550 (590)
                      ....=-+.|-...|+++++++  +.++.  ...|+..+.-....=-+.....+|+++++.-|++..-  ....+..-.+.
T Consensus       592 YA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtkl  671 (835)
T KOG2047|consen  592 YAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKL  671 (835)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhh
Confidence            233334568888999999998  44443  2467777755544445677889999999998854333  44456777888


Q ss_pred             CChHHHHHHHHHhhh
Q 038522          551 GAWDNARKTRKLMEE  565 (590)
Q Consensus       551 g~~~~A~~~~~~~~~  565 (590)
                      |..+.|+.++....+
T Consensus       672 GEidRARaIya~~sq  686 (835)
T KOG2047|consen  672 GEIDRARAIYAHGSQ  686 (835)
T ss_pred             hhHHHHHHHHHhhhh
Confidence            999999999987666

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.39  E-value=3e-08  Score=93.54  Aligned_cols=435  Identities=13%  Similarity=0.091  Sum_probs=243.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCC-CCchHHHHHHHHHH--Hhc
Q 038522          103 ISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRF-VENLFVKSALLDLY--AKC  179 (590)
Q Consensus       103 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~--~~~  179 (590)
                      ++-+...|++++|.+...++...+ +-+...+..-+-++.+.+.+++|..+.+.   .+. ..+.+-+  +=.+|  .+.
T Consensus        19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk---~~~~~~~~~~~--fEKAYc~Yrl   92 (652)
T KOG2376|consen   19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKK---NGALLVINSFF--FEKAYCEYRL   92 (652)
T ss_pred             HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHh---cchhhhcchhh--HHHHHHHHHc
Confidence            344556677777777777776643 33444555555566666777776633322   111 1111111  23333  456


Q ss_pred             CChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh-hHHHHHHHhccCCChhHHHHHHHHH
Q 038522          180 GWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCF-TLGSILRASVGGIELMKISQIHDLI  258 (590)
Q Consensus       180 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~  258 (590)
                      +..++|+..++.....+..+...-...+.+.|++++|+++|+.+.+.+.+--.. .-..++.+-...    .+    +.+
T Consensus        93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l----~~----~~~  164 (652)
T KOG2376|consen   93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL----QV----QLL  164 (652)
T ss_pred             ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh----hH----HHH
Confidence            788888888885555555566666777888888888888888887665322111 111111111000    00    011


Q ss_pred             HHhCCCC--ChhHHHHHHHHHHhcCChHHHHHHHHhc--------cCCCc----------cchHHHHHHHHhcCCChHHH
Q 038522          259 IKLGLES--SNKLTGSLIDVYAKYGSIRSAYQLYRSM--------LKTDI----------ISCTALISGFARDDNHSKEA  318 (590)
Q Consensus       259 ~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~--------~~~~~----------~~~~~l~~~~~~~~~~~~~a  318 (590)
                      ......|  +...+......+...|++.+|++++...        ...|.          .+--.+.-.+...|+ .++|
T Consensus       165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gq-t~ea  243 (652)
T KOG2376|consen  165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQ-TAEA  243 (652)
T ss_pred             HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcc-hHHH
Confidence            2222222  1222223455667788888888888776        11111          112234455667788 8999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHH---HHhchhhhHh--HHHH-----------HHHHHHhCCCcchhHHHHHHHHHHhc
Q 038522          319 FDLFKDMILKKMGIDDVILCLMLN---ICANVASLNL--GRQI-----------HAFAFKYQSSYDAAVGNALIDMYAKS  382 (590)
Q Consensus       319 ~~~~~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~--a~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~~~  382 (590)
                      ..++...+... .+|.........   +...-.++..  +...           +.........-.+..-+.++.+|.  
T Consensus       244 ~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--  320 (652)
T KOG2376|consen  244 SSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--  320 (652)
T ss_pred             HHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--
Confidence            99998888764 444422222211   1111111111  0001           111111111111222234444443  


Q ss_pred             CChHHHHHHHHhcCCCC-cchHHHHHHHHHh--cCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHhhccCChHHHHHH
Q 038522          383 GEIADANRAFDEMGDKN-VISWTSLIAGYAK--HGYGHEAIELYKKMKHEGMVPN--DVTFLSLLFACSHTGLTCEGWEL  457 (590)
Q Consensus       383 ~~~~~A~~~~~~~~~~~-~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~  457 (590)
                      +..+.+.++...+.... ...+.+++....+  ...+.++.+++....+.  .|.  ....-..+......|+++.|.++
T Consensus       321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~i  398 (652)
T KOG2376|consen  321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEI  398 (652)
T ss_pred             hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHH
Confidence            55667777777766432 3445555544432  33577888888887764  443  34555566677889999999999


Q ss_pred             HH--------HHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-----CCCCCHhH----HHHHHHHHHhcCCch
Q 038522          458 FT--------DMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-----NIKPTASL----WSAILGACSIYGNTS  520 (590)
Q Consensus       458 ~~--------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~~~----~~~l~~~~~~~~~~~  520 (590)
                      +.        .+.+   +...+.+...+...+.+.++.+.|..++.+.     ...+....    +..+...-.+.|+.+
T Consensus       399 l~~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~  475 (652)
T KOG2376|consen  399 LSLFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEE  475 (652)
T ss_pred             HHHHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchH
Confidence            98        4442   2333455666777888888777666666555     11222222    333333345779999


Q ss_pred             HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038522          521 LGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRK  561 (590)
Q Consensus       521 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  561 (590)
                      +|...++++++.+|++......++.+|+.. +.+.|..+-.
T Consensus       476 ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k  515 (652)
T KOG2376|consen  476 EASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSK  515 (652)
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhh
Confidence            999999999999999999999999999876 4566665544

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.39  E-value=2.1e-07  Score=88.99  Aligned_cols=548  Identities=13%  Similarity=0.088  Sum_probs=297.1

Q ss_pred             ccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHH
Q 038522            9 KTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKA   87 (590)
Q Consensus         9 ~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~   87 (590)
                      ..|+-++|...-... .+..-+.+.|+.+.-.+....++++|.+++..+.+.+ +.|...+.-+.-.-++.|+++.....
T Consensus        53 ~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~t  131 (700)
T KOG1156|consen   53 CLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLET  131 (700)
T ss_pred             cccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHH
Confidence            346666666666655 5455555566666666666677777777777777765 45666666665556666776666655


Q ss_pred             hccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhhHHHHHHH------HhccCchhhHHHHHHHH
Q 038522           88 FDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSG-VRANQFTYSSALRA------CARMRWLQGGRMIQGSI  157 (590)
Q Consensus        88 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~------~~~~~~~~~a~~~~~~~  157 (590)
                      -....+   .....|..+.-++.-.|+...|..++++..+.. -.|+...|......      ....|..+.|.+.+..-
T Consensus       132 r~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~  211 (700)
T KOG1156|consen  132 RNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDN  211 (700)
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhh
Confidence            555444   234467777777777888888888888877654 24666665544332      34455666665555443


Q ss_pred             HhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CCcchHHHHH-HHHHhcCCchHHH-HHHHHHHHcCCCCChh
Q 038522          158 QKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--KDVVSWNAMI-GGLAMQGFNDDSF-WLFRSMMRQGMKPDCF  233 (590)
Q Consensus       158 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li-~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~  233 (590)
                      ... +......-..-.+.+.+.++.++|..++..+..  ||...|+... .++.+-.+.-+++ .+|....+.  .|...
T Consensus       212 e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e  288 (700)
T KOG1156|consen  212 EKQ-IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHE  288 (700)
T ss_pred             hhH-HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccc
Confidence            332 122222333445667777888888888887765  4444444333 3333222222333 445444332  12111


Q ss_pred             hHHH-HHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH----HHhc--------------c
Q 038522          234 TLGS-ILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQL----YRSM--------------L  294 (590)
Q Consensus       234 ~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~----~~~~--------------~  294 (590)
                      .-.. -+..+....-.+....++....+.|+++-   +..+...|-.-...+-..++    ...+              .
T Consensus       289 ~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E  365 (700)
T KOG1156|consen  289 CPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQE  365 (700)
T ss_pred             cchhccHHHhCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccC
Confidence            1110 01111112223334455566666665542   22233333222211111111    1111              1


Q ss_pred             CCCccc--hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhH
Q 038522          295 KTDIIS--CTALISGFARDDNHSKEAFDLFKDMILKKMGIDDV-ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAV  371 (590)
Q Consensus       295 ~~~~~~--~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  371 (590)
                      .|....  +-.+...+-..|+ ++.|..+++..+.+  .|+.. .|..-.+.+...|+++.|..+++...+.+. +|..+
T Consensus       366 ~PttllWt~y~laqh~D~~g~-~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~I  441 (700)
T KOG1156|consen  366 PPTTLLWTLYFLAQHYDKLGD-YEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAI  441 (700)
T ss_pred             CchHHHHHHHHHHHHHHHccc-HHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHH
Confidence            122222  3335666777788 88888888887754  55543 344445677788888888888888877663 35555


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCCCCcc----------hHHHH--HHHHHhcCCchHHHHHHHHHHHc-----CCCCc
Q 038522          372 GNALIDMYAKSGEIADANRAFDEMGDKNVI----------SWTSL--IAGYAKHGYGHEAIELYKKMKHE-----GMVPN  434 (590)
Q Consensus       372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----------~~~~l--~~~~~~~~~~~~a~~~~~~m~~~-----g~~p~  434 (590)
                      -.--+....+..+.++|..+.....+.+..          .|-.+  ..+|.+.|++..|++-|....+.     .-+.|
T Consensus       442 NsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfD  521 (700)
T KOG1156|consen  442 NSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFD  521 (700)
T ss_pred             HHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhh
Confidence            446666777888888888888777643221          22222  35667777777666555444321     01234


Q ss_pred             HHHH----------HHHHHHhhccC-------ChHHHHHHHHHHHhhcCCC-CChhHHHHHH----HHHHhc-CChHHHH
Q 038522          435 DVTF----------LSLLFACSHTG-------LTCEGWELFTDMINKYRIL-PRAEHFSCVV----DLFARR-GQLESAY  491 (590)
Q Consensus       435 ~~~~----------~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~-~~~~~~~~l~----~~~~~~-g~~~~A~  491 (590)
                      ..||          .-|+.-.-...       -...|++++-.|.+..... +.......+-    ....+. .+-.+|.
T Consensus       522 fhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~  601 (700)
T KOG1156|consen  522 FHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAIEIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAK  601 (700)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHH
Confidence            4443          22222211111       1134566666666441000 1111111111    111111 1111222


Q ss_pred             HHHHhc--------------CCCCCHhHHHHHHHHHHhcCCc-hHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 038522          492 NMIRQM--------------NIKPTASLWSAILGACSIYGNT-SLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA  556 (590)
Q Consensus       492 ~~~~~~--------------~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  556 (590)
                      ..-+.+              +..||..   -+.....+..++ ++|..++..+....+++..+|..-+.+|.+.|.+.-|
T Consensus       602 ~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~t~~Pl~ea~kf~~~l~~~~~~~~~~~iL~~ely~rk~k~~l~  678 (700)
T KOG1156|consen  602 KEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLKTEDPLEEARKFLPNLQHKGKEKGETYILSFELYYRKGKFLLA  678 (700)
T ss_pred             HHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhhcCChHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHHHHH
Confidence            211111              2334544   233333444443 6799999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCcc
Q 038522          557 RKTRKLMEERSLRK  570 (590)
Q Consensus       557 ~~~~~~~~~~~~~~  570 (590)
                      .+.++.......+.
T Consensus       679 ~~~~~~~~~~~~~~  692 (700)
T KOG1156|consen  679 LACLNNAEGIHGTH  692 (700)
T ss_pred             HHHHHhhhhhcCCC
Confidence            99999887754433

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.36  E-value=1.9e-09  Score=93.86  Aligned_cols=303  Identities=13%  Similarity=0.078  Sum_probs=226.2

Q ss_pred             HHhcCChHHHHHHHHhccCCCccchH---HHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhchhhh
Q 038522          277 YAKYGSIRSAYQLYRSMLKTDIISCT---ALISGFARDDNHSKEAFDLFKDMILKKMGIDD---VILCLMLNICANVASL  350 (590)
Q Consensus       277 ~~~~g~~~~a~~~~~~~~~~~~~~~~---~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~~~~  350 (590)
                      +.-+.+.++|.+.|-+|.+.|+.++.   +|...|.+.|. .+.|+.+-+.+.++.--+..   ...-.+..-|...|-+
T Consensus        45 fLLs~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGE-vDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          45 FLLSNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGE-VDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             HHhhcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcch-HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence            44467899999999999877766654   46677888888 99999999998864222211   2334566677889999


Q ss_pred             HhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcch--------HHHHHHHHHhcCCchHHHHH
Q 038522          351 NLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVIS--------WTSLIAGYAKHGYGHEAIEL  422 (590)
Q Consensus       351 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~  422 (590)
                      +.|+.+|..+.+.+.- -......|+..|-...+|++|+++-+++.+-+...        |--|...+....+.+.|..+
T Consensus       124 DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         124 DRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            9999999999885432 34556789999999999999999998877543333        44455566677899999999


Q ss_pred             HHHHHHcCCCCcHH-HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC
Q 038522          423 YKKMKHEGMVPNDV-TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIK  500 (590)
Q Consensus       423 ~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~  500 (590)
                      +++..+.  .|+.+ .-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++....+.++ ...
T Consensus       203 l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         203 LKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            9999885  55443 3334566788999999999999999976 22223677888999999999999999999988 555


Q ss_pred             CCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH---hcCChHHHHHHHHHhhhcCCccCCCceEE
Q 038522          501 PTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT---AAGAWDNARKTRKLMEERSLRKNPGYSFL  577 (590)
Q Consensus       501 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  577 (590)
                      +....-..+...-....-.+.|...+.+-+...| +......|.....   ..|++.+-.-+++.|....++..|.+.--
T Consensus       280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~P-t~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~YRC~  358 (389)
T COG2956         280 TGADAELMLADLIELQEGIDAAQAYLTRQLRRKP-TMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPRYRCQ  358 (389)
T ss_pred             CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCC-cHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCCceec
Confidence            6666666666665666777888999999999999 5555555554433   34678899999999999888888877654


Q ss_pred             eecCcccc
Q 038522          578 QSSKKNIL  585 (590)
Q Consensus       578 ~~~~~~~~  585 (590)
                      --+-+.+.
T Consensus       359 ~CGF~a~~  366 (389)
T COG2956         359 NCGFTAHT  366 (389)
T ss_pred             ccCCccee
Confidence            44444433

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.35  E-value=3.5e-07  Score=91.60  Aligned_cols=144  Identities=17%  Similarity=0.202  Sum_probs=119.4

Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522          399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV  478 (590)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  478 (590)
                      .+..|+.+..+-.+.|...+|++-|-+      ..|+..|.-+++.+.+.|.|++-.+++...+++ ...|.+.  ..||
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi 1173 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELI 1173 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHH
Confidence            345788999999999999998877743      247788999999999999999999999988877 6666655  4688


Q ss_pred             HHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038522          479 DLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARK  558 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  558 (590)
                      -+|++.++..+-.+++.    -|+......+..-|...|.++.|.-+|.        +.+-|..|+..++..|.++.|..
T Consensus      1174 ~AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~--------~vSN~a~La~TLV~LgeyQ~AVD 1241 (1666)
T KOG0985|consen 1174 FAYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYS--------NVSNFAKLASTLVYLGEYQGAVD 1241 (1666)
T ss_pred             HHHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHH--------HhhhHHHHHHHHHHHHHHHHHHH
Confidence            99999999988877764    5888888899999999999999998887        66778889999999999888876


Q ss_pred             HHHHh
Q 038522          559 TRKLM  563 (590)
Q Consensus       559 ~~~~~  563 (590)
                      .-++.
T Consensus      1242 ~aRKA 1246 (1666)
T KOG0985|consen 1242 AARKA 1246 (1666)
T ss_pred             Hhhhc
Confidence            65543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.34  E-value=3e-09  Score=102.64  Aligned_cols=172  Identities=19%  Similarity=0.245  Sum_probs=112.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH-HHHHHHHHHhhc
Q 038522          369 AAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND-VTFLSLLFACSH  447 (590)
Q Consensus       369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~  447 (590)
                      ..+++.|..+|.+.|++++|...+                        +.|++++++.... ..|.. .-++.+...|..
T Consensus       283 a~~l~nLa~ly~~~GKf~EA~~~~------------------------e~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~  337 (508)
T KOG1840|consen  283 AATLNNLAVLYYKQGKFAEAEEYC------------------------ERALEIYEKLLGA-SHPEVAAQLSELAAILQS  337 (508)
T ss_pred             HHHHHHHHHHHhccCChHHHHHHH------------------------HHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHH
Confidence            344566667777778877777765                        3344555441111 12222 234445556667


Q ss_pred             cCChHHHHHHHHHHHhhcC--CCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc---------CCCCC-HhHHHHHHH
Q 038522          448 TGLTCEGWELFTDMINKYR--ILPR----AEHFSCVVDLFARRGQLESAYNMIRQM---------NIKPT-ASLWSAILG  511 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~  511 (590)
                      .+.+++|..+++...+.+.  ..++    ..+++.|...|...|++++|.++++++         +..+. ...++.+..
T Consensus       338 ~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~  417 (508)
T KOG1840|consen  338 MNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAE  417 (508)
T ss_pred             hcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHH
Confidence            7777777777766654432  1121    356777888888888888888888776         11222 345677888


Q ss_pred             HHHhcCCchHHHHHHHHHhc----CCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          512 ACSIYGNTSLGELAARNLFD----MEP---EKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       512 ~~~~~~~~~~a~~~~~~~~~----~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +|.+.++++.|.++|.+...    ..|   +-..+|..|+.+|..+|++++|.++.+.+..
T Consensus       418 ~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  418 AYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            88888888888888887763    234   3345688999999999999999999888764

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.33  E-value=3.1e-08  Score=92.97  Aligned_cols=488  Identities=11%  Similarity=0.009  Sum_probs=232.3

Q ss_pred             ccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 038522            7 NFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK   86 (590)
Q Consensus         7 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~   86 (590)
                      +..+.++.-|+-+-++..+..-|+..-.-+.+++.-.|.++.|......-.-  ...|..+.......+.+..+|+.|..
T Consensus        26 ~l~q~~y~~a~f~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~~l~~lk~~~~al~  103 (611)
T KOG1173|consen   26 ALMQHRYKTALFWADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAKCLVKLKEWDQALL  103 (611)
T ss_pred             HHHHHhhhHHHHHHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445566777777777744446666666677777777888887776655422  24577778888888999999999999


Q ss_pred             HhccCCC-CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCc
Q 038522           87 AFDRMPE-RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVEN  165 (590)
Q Consensus        87 ~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  165 (590)
                      ++..-.. .+...|..-=.  ...-..+.+.+....-.+.+      .+-.--..+....+.+.|+..|.+.....+. .
T Consensus       104 vl~~~~~~~~~f~yy~~~~--~~~l~~n~~~~~~~~~~ess------ic~lRgk~y~al~n~~~ar~~Y~~Al~~D~~-c  174 (611)
T KOG1173|consen  104 VLGRGHVETNPFSYYEKDA--ANTLELNSAGEDLMINLESS------ICYLRGKVYVALDNREEARDKYKEALLADAK-C  174 (611)
T ss_pred             Hhcccchhhcchhhcchhh--hceeccCcccccccccchhc------eeeeeeehhhhhccHHHHHHHHHHHHhcchh-h
Confidence            9984421 11111100000  00000011110000000000      0000001122223344444444443332110 0


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhccC-----CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHH
Q 038522          166 LFVKSALLDLYAKCGWIEDAWILFERIE-----RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILR  240 (590)
Q Consensus       166 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~  240 (590)
                      ...+..|+....-.  ..+-..+|+.+.     ..+......+.....-...-+.....-.+-.-.+..-+......-..
T Consensus       175 ~Ea~~~lvs~~mlt--~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad  252 (611)
T KOG1173|consen  175 FEAFEKLVSAHMLT--AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKAD  252 (611)
T ss_pred             HHHHHHHHHHHhcc--hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHH
Confidence            01111111111000  011112222110     00110000110000000000000000000001112233333334444


Q ss_pred             HhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC---CCccchHHHHHHHHhcCCChHH
Q 038522          241 ASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK---TDIISCTALISGFARDDNHSKE  317 (590)
Q Consensus       241 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~  317 (590)
                      -|-..+++.+..++.+.+.+.. ++....+..-|..+...|+..+-..+=.++++   ....+|-++..-|...++ .++
T Consensus       253 ~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k-~se  330 (611)
T KOG1173|consen  253 RLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGK-YSE  330 (611)
T ss_pred             HHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcC-cHH
Confidence            4556677777777777776654 44555555555566666665555555455532   245677777777777777 888


Q ss_pred             HHHHHHHHHHcCCCCC-HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522          318 AFDLFKDMILKKMGID-DVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG  396 (590)
Q Consensus       318 a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  396 (590)
                      |.+.|.+....  .|. ...|......++..+..++|...+..+-+.-+.                              
T Consensus       331 ARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G------------------------------  378 (611)
T KOG1173|consen  331 ARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG------------------------------  378 (611)
T ss_pred             HHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC------------------------------
Confidence            88888876532  221 123444444444555555554444433331111                              


Q ss_pred             CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc-CC---C-CC
Q 038522          397 DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY-RI---L-PR  470 (590)
Q Consensus       397 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~---~-~~  470 (590)
                        ....+--+..-|.+.++..-|.++|.+...  +.| |+..++-+.-.....+.+.+|...|+.....- .+   . -.
T Consensus       379 --~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w  454 (611)
T KOG1173|consen  379 --CHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFW  454 (611)
T ss_pred             --CcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccch
Confidence              001111123334455556666666655553  344 44444444444445556666666666554210 00   1 12


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN  545 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  545 (590)
                      ..+++.|..+|.+.+++++|+..+++.  -.+.+..++.++.-.|...|+++.|...|.+++.+.|++..+-..|..
T Consensus       455 ~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~  531 (611)
T KOG1173|consen  455 EPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL  531 (611)
T ss_pred             hHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence            345666667777777777777777776  334466667777777777777777777777777777766555444443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.32  E-value=1.4e-10  Score=100.66  Aligned_cols=210  Identities=11%  Similarity=0.041  Sum_probs=152.0

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCcchH-HHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD--KNVISW-TSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA  444 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~-~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  444 (590)
                      .+.+|..|...|.+..+++.|+.+|.+..+  |..+|| ..+.+.+-..++.++|.++|+...+.. +.+......+...
T Consensus       255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~  333 (478)
T KOG1129|consen  255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVG  333 (478)
T ss_pred             chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-Cccceeeeeeeec
Confidence            344455566667777777777777776653  333333 345566666777788888888777641 3355566666667


Q ss_pred             hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---CCCC--CHhHHHHHHHHHHhcCCc
Q 038522          445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM---NIKP--TASLWSAILGACSIYGNT  519 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~p--~~~~~~~l~~~~~~~~~~  519 (590)
                      |.-.++++-|+.+++++.+- |+. ++..|+.+.-+|.-.++++-++.-|+++   --.|  -...|..+.......||+
T Consensus       334 yfY~~~PE~AlryYRRiLqm-G~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~  411 (478)
T KOG1129|consen  334 YFYDNNPEMALRYYRRILQM-GAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF  411 (478)
T ss_pred             cccCCChHHHHHHHHHHHHh-cCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence            77777888888888888766 543 5667777777777788888887777776   1123  345688888777889999


Q ss_pred             hHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc-CCCceEEeec
Q 038522          520 SLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK-NPGYSFLQSS  580 (590)
Q Consensus       520 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~  580 (590)
                      ..|.+.++-++..+|++..+++.|+..-.+.|++++|..+++...+..+.- ++.+.+..++
T Consensus       412 nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~~~s  473 (478)
T KOG1129|consen  412 NLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQFMS  473 (478)
T ss_pred             HHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccccceeEEe
Confidence            999999999999999999999999999999999999999999998855432 3444444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.31  E-value=3.3e-08  Score=96.75  Aligned_cols=267  Identities=11%  Similarity=0.033  Sum_probs=140.6

Q ss_pred             ccccccCChHHHHHHhhhCCCCCCCcc-cHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC----
Q 038522            5 RANFKTGQLKQALKFSLSCPDTLLDPS-TYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVG----   79 (590)
Q Consensus         5 ~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g----   79 (590)
                      +.+..+|++++|++.++.....-+|.. .+....+.+.+.|+.++|..++..+++.+ +.|..-|..+..+..-..    
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~~   90 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLSD   90 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhccccc
Confidence            456778999999999988855555555 44666788889999999999999999987 456666666666653332    


Q ss_pred             -ChHHHHHHhccCCC--CCccchHHHHHHHHhcCCh-HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHH
Q 038522           80 -DVLSARKAFDRMPE--RNVVSWTAMISGYAQNGYD-ENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQG  155 (590)
Q Consensus        80 -~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  155 (590)
                       +.+....+++++.+  |...+...+.-.+.....+ ..+..++..+..+|+++   +|+.+-..|...........++.
T Consensus        91 ~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~  167 (517)
T PF12569_consen   91 EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVE  167 (517)
T ss_pred             ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHH
Confidence             45666677776654  3333322222222222222 23445666666777643   34444444443333333344444


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcc-CCCCc--chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-
Q 038522          156 SIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERI-ERKDV--VSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD-  231 (590)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-  231 (590)
                      ......               ...+.+....   ..- ..|+.  .++..+...|...|++++|++.+++.++.  .|+ 
T Consensus       168 ~~~~~l---------------~~~~~~~~~~---~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~  227 (517)
T PF12569_consen  168 EYVNSL---------------ESNGSFSNGD---DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL  227 (517)
T ss_pred             HHHHhh---------------cccCCCCCcc---ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence            333210               0000000000   000 01121  12233344455555555555555555544  343 


Q ss_pred             hhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCC
Q 038522          232 CFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKT  296 (590)
Q Consensus       232 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  296 (590)
                      +..|..-.+.+-..|++.+|...++...+.+ .-|..+-+..+..+.+.|++++|.+++....++
T Consensus       228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~  291 (517)
T PF12569_consen  228 VELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTRE  291 (517)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence            3334444455555555555555555555544 334445555555556666666666665555433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13041 PPR_2: PPR repeat family

Probab=99.31  E-value=4.8e-12  Score=81.44  Aligned_cols=50  Identities=30%  Similarity=0.640  Sum_probs=44.1

Q ss_pred             CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 038522           94 RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACAR  143 (590)
Q Consensus        94 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  143 (590)
                      ||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78888999999999999999999999999999999999999998888864

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.31  E-value=9.3e-08  Score=84.47  Aligned_cols=196  Identities=9%  Similarity=0.007  Sum_probs=128.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcC-------CchHHHHHHHHHHHcCCCCcH-HHHHHHHHH
Q 038522          373 NALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHG-------YGHEAIELYKKMKHEGMVPND-VTFLSLLFA  444 (590)
Q Consensus       373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~  444 (590)
                      ..|+-.|.+.+++.+|..+..++....+.-|-.-...++..|       ...-|.+.|+-.-+.+..-|. .--.++..+
T Consensus       289 lNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~  368 (557)
T KOG3785|consen  289 LNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY  368 (557)
T ss_pred             hhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence            345566889999999999999887544444433223333333       344456666555444443332 223445555


Q ss_pred             hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC-CCHhHHHH-HHHHHHhcCCchH
Q 038522          445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIK-PTASLWSA-ILGACSIYGNTSL  521 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~-l~~~~~~~~~~~~  521 (590)
                      +.-...+++.+..+..+..-  +..|...--.+..+++..|++.+|.++|-.. +-+ .|..+|.+ |.+.|.+.+.++.
T Consensus       369 fFL~~qFddVl~YlnSi~sY--F~NdD~Fn~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~l  446 (557)
T KOG3785|consen  369 FFLSFQFDDVLTYLNSIESY--FTNDDDFNLNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQL  446 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHH--hcCcchhhhHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchH
Confidence            66667789999888888753  2333333335788999999999999999888 322 35566655 4566778899887


Q ss_pred             HHHHHHHHhcCC-CCC-cchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCCC
Q 038522          522 GELAARNLFDME-PEK-SVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPG  573 (590)
Q Consensus       522 a~~~~~~~~~~~-p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  573 (590)
                      |-..   +++.+ |.+ -..+...+..|.+.|.+=-|.+.|+.+....+.|+.+
T Consensus       447 AW~~---~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnW  497 (557)
T KOG3785|consen  447 AWDM---MLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENW  497 (557)
T ss_pred             HHHH---HHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCcccc
Confidence            7554   44444 323 3334556788999999999999999888777666543

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=1.9e-07  Score=93.44  Aligned_cols=238  Identities=13%  Similarity=0.140  Sum_probs=138.3

Q ss_pred             ccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHH
Q 038522          298 IISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALID  377 (590)
Q Consensus       298 ~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  377 (590)
                      +..|+.+..+-.+.+. ..+|++-|-+      .-|+..|..++..+.+.|.++...+++..+.+..-.|.+.  +.|+-
T Consensus      1104 p~vWsqlakAQL~~~~-v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGL-VKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIF 1174 (1666)
T ss_pred             hHHHHHHHHHHHhcCc-hHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHH
Confidence            3567777777777777 7777666543      2366778888899999999988888888777766555544  57888


Q ss_pred             HHHhcCChHHHHHHHHhcCCCCcch--------------------------HHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 038522          378 MYAKSGEIADANRAFDEMGDKNVIS--------------------------WTSLIAGYAKHGYGHEAIELYKKMKHEGM  431 (590)
Q Consensus       378 ~~~~~~~~~~A~~~~~~~~~~~~~~--------------------------~~~l~~~~~~~~~~~~a~~~~~~m~~~g~  431 (590)
                      +|++.+++.+-++++..   ||...                          |..|...+...|++..|...-++.     
T Consensus      1175 AyAkt~rl~elE~fi~g---pN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKA----- 1246 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIAG---PNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKA----- 1246 (1666)
T ss_pred             HHHHhchHHHHHHHhcC---CCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhc-----
Confidence            88888887776665432   33333                          333344444444444443332221     


Q ss_pred             CCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHH
Q 038522          432 VPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAI  509 (590)
Q Consensus       432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l  509 (590)
                       .+..||..+-.+|...+.+.-|     .|..- ++.....-..-++..|...|-+++-+.+++.. |++. ....|..|
T Consensus      1247 -ns~ktWK~VcfaCvd~~EFrlA-----QiCGL-~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTEL 1319 (1666)
T KOG0985|consen 1247 -NSTKTWKEVCFACVDKEEFRLA-----QICGL-NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTEL 1319 (1666)
T ss_pred             -cchhHHHHHHHHHhchhhhhHH-----HhcCc-eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHH
Confidence             2344555555555544433322     12211 22233455666777777777777777777766 4432 34455666


Q ss_pred             HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .-.|.+. ++++..+.++-....-.     .--+.+++-.+--|.|..-++.+-.+
T Consensus      1320 aiLYsky-kp~km~EHl~LFwsRvN-----ipKviRA~eqahlW~ElvfLY~~y~e 1369 (1666)
T KOG0985|consen 1320 AILYSKY-KPEKMMEHLKLFWSRVN-----IPKVIRAAEQAHLWSELVFLYDKYEE 1369 (1666)
T ss_pred             HHHHHhc-CHHHHHHHHHHHHHhcc-----hHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            5555544 55666666655542211     22345555666666666666655433

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.29  E-value=2.5e-07  Score=87.55  Aligned_cols=116  Identities=11%  Similarity=0.009  Sum_probs=68.4

Q ss_pred             ccccccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHH--HHHH--HhcC
Q 038522            5 RANFKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKV--IIFY--AKVG   79 (590)
Q Consensus         5 ~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--i~~~--~~~g   79 (590)
                      +.+..+|++++|.+.-.++ ...+-+..++..-+-+....+.+++|+.+.+.-.      -..+++..  =.+|  .+.+
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~------~~~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNG------ALLVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcc------hhhhcchhhHHHHHHHHHcc
Confidence            4455667777777777777 4445555566666667777777777764433211      11111111  2222  3567


Q ss_pred             ChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 038522           80 DVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSG  126 (590)
Q Consensus        80 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  126 (590)
                      ..++|+..++.....+..+...-.+.+-+.|++++|+++|+.+.+++
T Consensus        94 k~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen   94 KLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             cHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            77777777775444444455555666777777777777777776654

>PRK12370 invasion protein regulator; Provisional

Probab=99.29  E-value=2.5e-09  Score=108.49  Aligned_cols=243  Identities=11%  Similarity=0.036  Sum_probs=174.7

Q ss_pred             hHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHh---------chhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC
Q 038522          315 SKEAFDLFKDMILKKMGIDD-VILCLMLNICA---------NVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGE  384 (590)
Q Consensus       315 ~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  384 (590)
                      .++|..+|++.++.  .|+. ..+..+..++.         ..++++.|...++.+.+..+. +...+..+..++...|+
T Consensus       277 ~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~  353 (553)
T PRK12370        277 LQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE  353 (553)
T ss_pred             HHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence            56778888877754  4443 23333332222         234578888888888887654 66777888888999999


Q ss_pred             hHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH-HHHHHHHHHhhccCChHHHHHHHHH
Q 038522          385 IADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND-VTFLSLLFACSHTGLTCEGWELFTD  460 (590)
Q Consensus       385 ~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~  460 (590)
                      +++|...|++..+  | +...+..+...+...|++++|+..+++..+.  .|+. ..+..++..+...|++++|...+++
T Consensus       354 ~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~  431 (553)
T PRK12370        354 YIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAGITKLWITYYHTGIDDAIRLGDE  431 (553)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence            9999999999774  4 3457888889999999999999999999885  5643 3333444456678999999999999


Q ss_pred             HHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHh-HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522          461 MINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTAS-LWSAILGACSIYGNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       461 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      +.+. . .| +...+..+..++...|++++|...++++ ...|+.. .++.+...+...|  +.|...++.+.+..-..+
T Consensus       432 ~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~  507 (553)
T PRK12370        432 LRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID  507 (553)
T ss_pred             HHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence            8764 2 34 3555777888899999999999999988 4455543 4455556666666  478888888775443233


Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          538 VNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      .....+..+|.-.|+.+.+..+ +++.+.+
T Consensus       508 ~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        508 NNPGLLPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             cCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence            3333477788889998888887 7777654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.28  E-value=2.9e-07  Score=88.09  Aligned_cols=448  Identities=10%  Similarity=-0.008  Sum_probs=246.0

Q ss_pred             cccCChHHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 038522            8 FKTGQLKQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK   86 (590)
Q Consensus         8 ~~~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~   86 (590)
                      ...+++...+++.+.+ ...+....+.....-.+...|+-++|.......++.+ ..+.+.|..+.-.+-...++++|++
T Consensus        18 yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiK   96 (700)
T KOG1156|consen   18 YETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIK   96 (700)
T ss_pred             HHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHH
Confidence            3455666666666666 4333444444444445556677888888777776654 4466777777777777778888888


Q ss_pred             HhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC-C
Q 038522           87 AFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGR-F  162 (590)
Q Consensus        87 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~  162 (590)
                      .|.....   .|...|--+.-.=+..|+++........+.+.. +-....|.....+.--.|+...|..+++...+.. -
T Consensus        97 cy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~  175 (700)
T KOG1156|consen   97 CYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT  175 (700)
T ss_pred             HHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            8877543   344555544444456677777777777766642 2234456666667777788888888888887754 2


Q ss_pred             CCchHHHHHH------HHHHHhcCChHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChh
Q 038522          163 VENLFVKSAL------LDLYAKCGWIEDAWILFERIERK---DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCF  233 (590)
Q Consensus       163 ~~~~~~~~~l------~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  233 (590)
                      .|+...+...      .....+.|..++|.+.+......   ....-..-...+.+.+++++|..++..+...  .||..
T Consensus       176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~  253 (700)
T KOG1156|consen  176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNL  253 (700)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhH
Confidence            4555444332      23445667777777777665432   2222334456677888888888888888876  57776


Q ss_pred             hHHHHHHHhc-cC-CChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhccCCC-ccchHHHHHHHH
Q 038522          234 TLGSILRASV-GG-IELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSI-RSAYQLYRSMLKTD-IISCTALISGFA  309 (590)
Q Consensus       234 ~~~~ll~~~~-~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~-~~~~~~l~~~~~  309 (590)
                      .|...+..+. +. +..+....+|....+.  .|....-.-+--.......+ +....++....+.+ +.++..+...+-
T Consensus       254 ~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk  331 (700)
T KOG1156|consen  254 DYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYK  331 (700)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHh
Confidence            6665555443 22 2223333455444332  11111000000001111111 12222333332222 222333332222


Q ss_pred             hcCCChHHHHHHHHHHHH----cC---------C-CCCHH--HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHH
Q 038522          310 RDDNHSKEAFDLFKDMIL----KK---------M-GIDDV--ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGN  373 (590)
Q Consensus       310 ~~~~~~~~a~~~~~~~~~----~~---------~-~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  373 (590)
                      .... .+-..++...+..    .|         + +|...  |+-.+...+-..|+++.|..+++.++...+. -+..|.
T Consensus       332 ~p~k-~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT-liEly~  409 (700)
T KOG1156|consen  332 DPEK-VAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT-LIELYL  409 (700)
T ss_pred             chhH-hHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch-HHHHHH
Confidence            1111 1111111111111    11         0 33332  3335666777788888888888877776432 344555


Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-----cHHHHHHH---H
Q 038522          374 ALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-----NDVTFLSL---L  442 (590)
Q Consensus       374 ~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~l---l  442 (590)
                      .-.+++...|+++.|..++++..+   +|...=.--..-..+.++.++|.++.....+.|...     +....+..   .
T Consensus       410 ~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g  489 (700)
T KOG1156|consen  410 VKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDG  489 (700)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhh
Confidence            556777888888888888887764   333322234555567788888888888877766411     11111111   2


Q ss_pred             HHhhccCChHHHHHHHHHHHh
Q 038522          443 FACSHTGLTCEGWELFTDMIN  463 (590)
Q Consensus       443 ~~~~~~~~~~~a~~~~~~~~~  463 (590)
                      .+|.+.|++..|++-|..+.+
T Consensus       490 ~ay~r~~k~g~ALKkfh~i~k  510 (700)
T KOG1156|consen  490 EAYLRQNKLGLALKKFHEIEK  510 (700)
T ss_pred             HHHHHHHHHHHHHHHHhhHHH
Confidence            356666777666665555443

>PF13041 PPR_2: PPR repeat family

Probab=99.27  E-value=1.1e-11  Score=79.71  Aligned_cols=50  Identities=30%  Similarity=0.626  Sum_probs=43.6

Q ss_pred             CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc
Q 038522          195 KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVG  244 (590)
Q Consensus       195 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  244 (590)
                      ||+.+||++|++|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            67888888888888899999999999999988999999999888888864

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.26  E-value=2.3e-07  Score=90.98  Aligned_cols=45  Identities=13%  Similarity=0.155  Sum_probs=41.1

Q ss_pred             CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522          518 NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL  562 (590)
Q Consensus       518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  562 (590)
                      =.++|.++++-+.+..|++..+|..-..+|.+.|++--|++.+.+
T Consensus       472 PLe~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k  516 (517)
T PF12569_consen  472 PLEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK  516 (517)
T ss_pred             HHHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence            447899999999999999999999999999999999999988764

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.23  E-value=8.9e-10  Score=102.05  Aligned_cols=88  Identities=15%  Similarity=0.017  Sum_probs=41.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhcc
Q 038522          373 NALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHT  448 (590)
Q Consensus       373 ~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~  448 (590)
                      ..+...|.+.|+.++|...|++..+  | +...|+.+...+...|++++|...|++..+.  .| +...+..+..++...
T Consensus        68 ~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~  145 (296)
T PRK11189         68 YERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYG  145 (296)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHC
Confidence            3334444444555555544444432  1 2334444555555555555555555555442  33 233444444444445


Q ss_pred             CChHHHHHHHHHHH
Q 038522          449 GLTCEGWELFTDMI  462 (590)
Q Consensus       449 ~~~~~a~~~~~~~~  462 (590)
                      |++++|.+.++...
T Consensus       146 g~~~eA~~~~~~al  159 (296)
T PRK11189        146 GRYELAQDDLLAFY  159 (296)
T ss_pred             CCHHHHHHHHHHHH
Confidence            55555555555554

>PRK12370 invasion protein regulator; Provisional

Probab=99.22  E-value=2.7e-09  Score=108.21  Aligned_cols=211  Identities=13%  Similarity=0.029  Sum_probs=165.7

Q ss_pred             hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh---------cCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcC
Q 038522          347 VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK---------SGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHG  414 (590)
Q Consensus       347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~  414 (590)
                      .++++.|...++...+..+. +...+..+..+|..         .+++++|...+++..+  | +...+..+...+...|
T Consensus       274 ~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        274 PYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence            35678899999999887654 34555555555442         3458899999998874  3 5567888888889999


Q ss_pred             CchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 038522          415 YGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA-EHFSCVVDLFARRGQLESAYN  492 (590)
Q Consensus       415 ~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~  492 (590)
                      ++++|...+++..+.  .| +...+..+...+...|++++|...+++..+.   .|+. ..+..++..+...|++++|..
T Consensus       353 ~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~  427 (553)
T PRK12370        353 EYIVGSLLFKQANLL--SPISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIR  427 (553)
T ss_pred             CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHH
Confidence            999999999999986  56 4667888888999999999999999999854   5553 233344556777899999999


Q ss_pred             HHHhc--CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          493 MIRQM--NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       493 ~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .+++.  ..+|+ +..+..+..++...|++++|...++++....|.+......++..|...|  ++|...++.+.+
T Consensus       428 ~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~  501 (553)
T PRK12370        428 LGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLE  501 (553)
T ss_pred             HHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence            99987  32454 4456777788889999999999999998888988888888888888888  488888887766

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.22  E-value=5e-09  Score=94.62  Aligned_cols=192  Identities=15%  Similarity=0.122  Sum_probs=122.0

Q ss_pred             HHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCc
Q 038522          340 MLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYG  416 (590)
Q Consensus       340 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~  416 (590)
                      +...+...|+++.|...++...+..+ .+...+..+...+...|++++|.+.+++..+   .+...+..+...+...|++
T Consensus        37 la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~  115 (234)
T TIGR02521        37 LALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY  115 (234)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH
Confidence            33344444444444444444433321 1344555566666777777777777766552   2334566666777777788


Q ss_pred             hHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 038522          417 HEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIR  495 (590)
Q Consensus       417 ~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  495 (590)
                      ++|.+.+++..+....| ....+..+..++...|++++|.+.+++..+.  .+.+...+..+...+...|++++|.+.++
T Consensus       116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~  193 (234)
T TIGR02521       116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESLLELAELYYLRGQYKDARAYLE  193 (234)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            88888887777642222 3445566667777888888888888887754  12235567777788888888888888888


Q ss_pred             hc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          496 QM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       496 ~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      +. .. +++...+..+...+...|+.+.|....+.+.+..|
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~  234 (234)
T TIGR02521       194 RYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKLFP  234 (234)
T ss_pred             HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            76 22 33455566666777778888888888777665543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.22  E-value=1.8e-09  Score=89.55  Aligned_cols=161  Identities=15%  Similarity=0.158  Sum_probs=119.3

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHH
Q 038522          403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDL  480 (590)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~  480 (590)
                      ...|..+|...|+...|..-+++.++.  .| +..++..+...|.+.|..+.|.+.|+...+   +.| +..+.|.....
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F  112 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF  112 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence            445666777788888888888887775  45 456677777777788888888888888774   344 36677777777


Q ss_pred             HHhcCChHHHHHHHHhcCCCC----CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 038522          481 FARRGQLESAYNMIRQMNIKP----TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA  556 (590)
Q Consensus       481 ~~~~g~~~~A~~~~~~~~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  556 (590)
                      +|..|++++|...|+++-..|    -..+|..+.....+.|+.+.|...+++.++.+|+.+.....++......|++-+|
T Consensus       113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            788888888888888772222    2356777776667788888888888888888888888888888888888888888


Q ss_pred             HHHHHHhhhcCC
Q 038522          557 RKTRKLMEERSL  568 (590)
Q Consensus       557 ~~~~~~~~~~~~  568 (590)
                      ..+++....++.
T Consensus       193 r~~~~~~~~~~~  204 (250)
T COG3063         193 RLYLERYQQRGG  204 (250)
T ss_pred             HHHHHHHHhccc
Confidence            888887766554

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.21  E-value=1.4e-07  Score=92.09  Aligned_cols=500  Identities=12%  Similarity=0.017  Sum_probs=261.2

Q ss_pred             ccccCChHHHHHHhhhC--CCCCCCcccHHHHHHH---hhcccchhHHHHHHHHHHHhcCCCc-----hhHHHHHHHHHH
Q 038522            7 NFKTGQLKQALKFSLSC--PDTLLDPSTYMSLLQF---CIDKKAERQAHLIHAHIITNGYESN-----LHLSTKVIIFYA   76 (590)
Q Consensus         7 ~~~~g~~~~a~~~~~~~--~~~~~~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~   76 (590)
                      +...++++.++.-|.+.  .+.+.++.++-.+...   +.-.++.+++  ++-.++.....|.     ...+..++.-+.
T Consensus       237 w~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~--~Lllli~es~i~Re~~~d~ilslm~~~~k~  314 (799)
T KOG4162|consen  237 WKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEV--ILLLLIEESLIPRENIEDAILSLMLLLRKL  314 (799)
T ss_pred             hcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHH--HHHHHHHhhccccccHHHHHHHHHHHHHHH
Confidence            34556677777777777  5555555555554432   2334455544  2222222222222     111111111122


Q ss_pred             hcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHH
Q 038522           77 KVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGS  156 (590)
Q Consensus        77 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  156 (590)
                      +.+++.           -+...|..|.-++.+.|+++.+.+.|++.... ..-..+.|..+-..+...|.-..|..+++.
T Consensus       315 r~~~~q-----------nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~  382 (799)
T KOG4162|consen  315 RLKKFQ-----------NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRE  382 (799)
T ss_pred             HHhhhc-----------chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHh
Confidence            222211           12333444444555555555555555555432 223444555555555555555555555554


Q ss_pred             HHhcCCCC-chHHHHHHHHHHHh-cCChHHHHHHHhccCC--------CCcchHHHHHHHHHh-----------cCCchH
Q 038522          157 IQKGRFVE-NLFVKSALLDLYAK-CGWIEDAWILFERIER--------KDVVSWNAMIGGLAM-----------QGFNDD  215 (590)
Q Consensus       157 ~~~~~~~~-~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~-----------~~~~~~  215 (590)
                      -......| +...+...-..|.+ .+..++++.+-.++..        -....|..+.-+|..           .....+
T Consensus       383 ~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~k  462 (799)
T KOG4162|consen  383 SLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKK  462 (799)
T ss_pred             hcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHH
Confidence            44432222 22222222222222 2334443333332221        112222222222221           111245


Q ss_pred             HHHHHHHHHHcCC-CCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc
Q 038522          216 SFWLFRSMMRQGM-KPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSML  294 (590)
Q Consensus       216 a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~  294 (590)
                      +++.+++..+.+. .|+...|..  --++-.++++.|.+..++..+.+-..+...|..|.-.+...+++.+|+.+.+...
T Consensus       463 slqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al  540 (799)
T KOG4162|consen  463 SLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL  540 (799)
T ss_pred             HHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            6667777665542 232222222  2345667788888888888877667777778877777888888888888777663


Q ss_pred             CCCccchHH---HHHHHHhcCCChHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHh--CCCc
Q 038522          295 KTDIISCTA---LISGFARDDNHSKEAFDLFKDMILK--KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKY--QSSY  367 (590)
Q Consensus       295 ~~~~~~~~~---l~~~~~~~~~~~~~a~~~~~~~~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~  367 (590)
                      ..-...++.   -+..-..-++ .++++.....+..-  ...|-..+           ++-....+....+.-.  ...-
T Consensus       541 ~E~~~N~~l~~~~~~i~~~~~~-~e~~l~t~~~~L~~we~~~~~q~~-----------~~~g~~~~lk~~l~la~~q~~~  608 (799)
T KOG4162|consen  541 EEFGDNHVLMDGKIHIELTFND-REEALDTCIHKLALWEAEYGVQQT-----------LDEGKLLRLKAGLHLALSQPTD  608 (799)
T ss_pred             HHhhhhhhhchhhhhhhhhccc-HHHHHHHHHHHHHHHHhhhhHhhh-----------hhhhhhhhhhcccccCcccccc
Confidence            221111111   1111122344 55555555544321  00000000           0011111111111000  1111


Q ss_pred             chhHHHHHHHHHH---hcCChHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHH
Q 038522          368 DAAVGNALIDMYA---KSGEIADANRAFDEMGDKNV------ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTF  438 (590)
Q Consensus       368 ~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  438 (590)
                      .+.++..+.....   +.-..+.....+.....|+.      ..|......+.+.++.++|...+.+.... .+-....|
T Consensus       609 a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~  687 (799)
T KOG4162|consen  609 AISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVY  687 (799)
T ss_pred             cchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHH
Confidence            1222222222111   11111112122222222332      24566777888899999999888888764 23356677


Q ss_pred             HHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHH--HHHhc-CCCC-CHhHHHHHHHHH
Q 038522          439 LSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYN--MIRQM-NIKP-TASLWSAILGAC  513 (590)
Q Consensus       439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~-~~~p-~~~~~~~l~~~~  513 (590)
                      ......+...|.+++|.+.|....   .+.|+ +....++..++.+.|+..-|..  ++..+ .+.| +...|..+...+
T Consensus       688 ~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~  764 (799)
T KOG4162|consen  688 YLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF  764 (799)
T ss_pred             HHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            777778888999999999999888   56776 6788999999999998777777  88888 5566 678899999999


Q ss_pred             HhcCCchHHHHHHHHHhcCCCCCcc
Q 038522          514 SIYGNTSLGELAARNLFDMEPEKSV  538 (590)
Q Consensus       514 ~~~~~~~~a~~~~~~~~~~~p~~~~  538 (590)
                      .+.|+.++|-+.|..+.++++.+|.
T Consensus       765 k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  765 KKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHccchHHHHHHHHHHHhhccCCCc
Confidence            9999999999999999999876654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.18  E-value=2.6e-07  Score=89.50  Aligned_cols=337  Identities=15%  Similarity=0.112  Sum_probs=191.3

Q ss_pred             HHHHHHhcCChHHHHHHHhcc--CCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChh
Q 038522          172 LLDLYAKCGWIEDAWILFERI--ERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELM  249 (590)
Q Consensus       172 l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~  249 (590)
                      -|..|.+.|...+|.+....-  ...|......+..++.+..-+++|-++|+++..         +...+..+.+..-+.
T Consensus       621 aiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~  691 (1636)
T KOG3616|consen  621 AIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFG  691 (1636)
T ss_pred             HHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHH
Confidence            345566666655554433211  113444444555555555556666666655542         112223333333333


Q ss_pred             HHHHHHHHHHHhCCCCChhHH-HHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHc
Q 038522          250 KISQIHDLIIKLGLESSNKLT-GSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILK  328 (590)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~  328 (590)
                      +|.++-+..    ++..+... ..-...+...|+++.|..-|-+..     ..-..+.+-..... +.+|+.+++.++++
T Consensus       692 kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~-----~~~kaieaai~ake-w~kai~ildniqdq  761 (1636)
T KOG3616|consen  692 KAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN-----CLIKAIEAAIGAKE-WKKAISILDNIQDQ  761 (1636)
T ss_pred             HHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh-----hHHHHHHHHhhhhh-hhhhHhHHHHhhhh
Confidence            333332211    11111111 111222344556666655543321     11223344455666 88888888887765


Q ss_pred             CCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC--cchHHHH
Q 038522          329 KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN--VISWTSL  406 (590)
Q Consensus       329 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~l  406 (590)
                      .  .-+.-|..+...|++.|+++.|+++|...         ..++-.|.+|.+.|++++|.++-++...|.  +..|-+-
T Consensus       762 k--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~~~e~t~~~yiak  830 (1636)
T KOG3616|consen  762 K--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECHGPEATISLYIAK  830 (1636)
T ss_pred             c--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhcCchhHHHHHHHh
Confidence            3  33445667778888888888888887532         234667788888888888888888877653  3456666


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ  486 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  486 (590)
                      ..-+-..|++.+|.++|-...    .|+.     .+..|-+.|..+..+++.++-...    .-..|...+..-|-..|+
T Consensus       831 aedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~  897 (1636)
T KOG3616|consen  831 AEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGD  897 (1636)
T ss_pred             HHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh----hhhHHHHHHHHHHHhccC
Confidence            666677888888877764432    3442     245577777777777766544321    124566677778888899


Q ss_pred             hHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522          487 LESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL  562 (590)
Q Consensus       487 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  562 (590)
                      +.+|.+.|-+.+      -|.+-++.|...+.+++|.++.+   .....|..-.....|+-.-.|  +.|.+++++
T Consensus       898 lkaae~~flea~------d~kaavnmyk~s~lw~dayriak---tegg~n~~k~v~flwaksigg--daavkllnk  962 (1636)
T KOG3616|consen  898 LKAAEEHFLEAG------DFKAAVNMYKASELWEDAYRIAK---TEGGANAEKHVAFLWAKSIGG--DAAVKLLNK  962 (1636)
T ss_pred             hhHHHHHHHhhh------hHHHHHHHhhhhhhHHHHHHHHh---ccccccHHHHHHHHHHHhhCc--HHHHHHHHh
Confidence            999988887764      35666666767777766655543   223334444444444444444  467787775

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.15  E-value=1.4e-09  Score=94.66  Aligned_cols=231  Identities=13%  Similarity=0.071  Sum_probs=166.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcc--CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchh
Q 038522          271 GSLIDVYAKYGSIRSAYQLYRSML--KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVA  348 (590)
Q Consensus       271 ~~l~~~~~~~g~~~~a~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~  348 (590)
                      +.+.++|.+.|.+.+|++.|+...  .+-+.||-.|-..|.+..+ +..|+.++.+-++.  .|-.+||           
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQ-P~~AL~~~~~gld~--fP~~VT~-----------  292 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQ-PERALLVIGEGLDS--FPFDVTY-----------  292 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhcc-HHHHHHHHhhhhhc--CCchhhh-----------
Confidence            345566666666666666666552  3445566666666666666 66666666665543  3443333           


Q ss_pred             hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038522          349 SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKK  425 (590)
Q Consensus       349 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~  425 (590)
                                             ..-..+.+...++.++|.++|+...+   .|+.....+...|.-.++++-|+.+|++
T Consensus       293 -----------------------l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRR  349 (478)
T KOG1129|consen  293 -----------------------LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRR  349 (478)
T ss_pred             -----------------------hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHH
Confidence                                   23445566666777888888877664   3455566667778888999999999999


Q ss_pred             HHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc--CCCC
Q 038522          426 MKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLFARRGQLESAYNMIRQM--NIKP  501 (590)
Q Consensus       426 m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p  501 (590)
                      +.+.|+ -++..|+.+.-+|...+.++-++.-|++.... .-.|+  .++|-.+.......|++.-|.+-|+-.  ....
T Consensus       350 iLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~  427 (478)
T KOG1129|consen  350 ILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ  427 (478)
T ss_pred             HHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc
Confidence            999884 56778888888888999999999999988875 44454  567877887888889999999999887  3333


Q ss_pred             CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522          502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY  540 (590)
Q Consensus       502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  540 (590)
                      +...++.|.-.-.+.|++++|..++..+....|.-....
T Consensus       428 h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~  466 (478)
T KOG1129|consen  428 HGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVT  466 (478)
T ss_pred             hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCccccccc
Confidence            567888888888899999999999999999998544333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.11  E-value=1.3e-07  Score=91.54  Aligned_cols=237  Identities=19%  Similarity=0.192  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHhccCC----------CCcc-hHHHHHHHHHhcCCchHHHHHHHHHHHc---CCCCC-
Q 038522          167 FVKSALLDLYAKCGWIEDAWILFERIER----------KDVV-SWNAMIGGLAMQGFNDDSFWLFRSMMRQ---GMKPD-  231 (590)
Q Consensus       167 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~-  231 (590)
                      .+...+...|...|++++|..+++...+          +.+. ..+.+...|...+++++|..+|+++...   ..-++ 
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            3455566777777777777776665432          1111 2334566788888888888888887542   01111 


Q ss_pred             ---hhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---cCCCc-cchHHH
Q 038522          232 ---CFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM---LKTDI-ISCTAL  304 (590)
Q Consensus       232 ---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~-~~~~~l  304 (590)
                         ..+++.|-.+|.+.|++++|...++...+.                            ++..   ..+.+ ..++.+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I----------------------------~~~~~~~~~~~v~~~l~~~  331 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEI----------------------------YEKLLGASHPEVAAQLSEL  331 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHH----------------------------HHHhhccChHHHHHHHHHH
Confidence               223344444455555555555554443321                            1110   00111 112333


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 038522          305 ISGFARDDNHSKEAFDLFKDMILK---KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK  381 (590)
Q Consensus       305 ~~~~~~~~~~~~~a~~~~~~~~~~---~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  381 (590)
                      ...+...++ +++|..+++...+.   -..++.                               ..-..+++.+...|.+
T Consensus       332 ~~~~~~~~~-~Eea~~l~q~al~i~~~~~g~~~-------------------------------~~~a~~~~nl~~l~~~  379 (508)
T KOG1840|consen  332 AAILQSMNE-YEEAKKLLQKALKIYLDAPGEDN-------------------------------VNLAKIYANLAELYLK  379 (508)
T ss_pred             HHHHHHhcc-hhHHHHHHHHHHHHHHhhccccc-------------------------------hHHHHHHHHHHHHHHH
Confidence            444444455 66666666644321   011111                               1134556667777777


Q ss_pred             cCChHHHHHHHHhcCCC--------C---cchHHHHHHHHHhcCCchHHHHHHHHHH----HcCC-CCc-HHHHHHHHHH
Q 038522          382 SGEIADANRAFDEMGDK--------N---VISWTSLIAGYAKHGYGHEAIELYKKMK----HEGM-VPN-DVTFLSLLFA  444 (590)
Q Consensus       382 ~~~~~~A~~~~~~~~~~--------~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~----~~g~-~p~-~~~~~~ll~~  444 (590)
                      .|++++|+++++++.+.        +   -..++.|...|.+.+++.+|.++|.+..    ..|. .|+ ..+|..|...
T Consensus       380 ~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~  459 (508)
T KOG1840|consen  380 MGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAAL  459 (508)
T ss_pred             hcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHH
Confidence            77777777777766520        1   2355667777777777777777776643    2221 222 4577888888


Q ss_pred             hhccCChHHHHHHHHHHHh
Q 038522          445 CSHTGLTCEGWELFTDMIN  463 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~  463 (590)
                      |...|+++.|.++.+.+..
T Consensus       460 Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  460 YRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHcccHHHHHHHHHHHHH
Confidence            8888888888888777653

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.10  E-value=7.5e-07  Score=87.45  Aligned_cols=241  Identities=13%  Similarity=0.110  Sum_probs=160.4

Q ss_pred             CCchhHHHHHHH--HHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHc-C--------CCCC
Q 038522           62 ESNLHLSTKVII--FYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRS-G--------VRAN  130 (590)
Q Consensus        62 ~~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~  130 (590)
                      .-|..|...+++  .|..-|+.+.|.+-.+.++  +...|..+.+.|.+.++.+-|.-.+..|... |        -.|+
T Consensus       723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~  800 (1416)
T KOG3617|consen  723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE  800 (1416)
T ss_pred             ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence            346667667665  3667788888887776665  3456888999999888888887777766532 1        1222


Q ss_pred             HhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC-CCcchHHHHHHHHHh
Q 038522          131 QFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER-KDVVSWNAMIGGLAM  209 (590)
Q Consensus       131 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~  209 (590)
                       .+=.-+.-.....|.+++|+.+|..-...         ..|-..|-..|.|++|.++-+.-.+ .=..+|.....-+-.
T Consensus       801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lea  870 (1416)
T KOG3617|consen  801 -EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEA  870 (1416)
T ss_pred             -chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHh
Confidence             22222333345778899999999887664         3455667788999999888765332 122356666666777


Q ss_pred             cCCchHHHHHHHHH----------HHcC---------CCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHH
Q 038522          210 QGFNDDSFWLFRSM----------MRQG---------MKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLT  270 (590)
Q Consensus       210 ~~~~~~a~~~~~~m----------~~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  270 (590)
                      .++.+.|++.|++.          ....         -..|...|......+...|+.+.|..+|....+         |
T Consensus       871 r~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~  941 (1416)
T KOG3617|consen  871 RRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------Y  941 (1416)
T ss_pred             hccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------h
Confidence            78888888877653          2111         012334445555556667777777777776553         4


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHH
Q 038522          271 GSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI  326 (590)
Q Consensus       271 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~  326 (590)
                      .++++..|-.|+.++|-++-++-  .|......+.+.|-..|+ +.+|..+|.+.+
T Consensus       942 fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~-v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  942 FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGD-VVKAVKFFTRAQ  994 (1416)
T ss_pred             hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHH-HHHHHHHHHHHH
Confidence            45666677778888887776553  355667778888888888 888988888765

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.09  E-value=1.1e-06  Score=85.19  Aligned_cols=254  Identities=17%  Similarity=0.103  Sum_probs=121.9

Q ss_pred             HHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHH
Q 038522           36 LLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENA  115 (590)
Q Consensus        36 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  115 (590)
                      .+..|....+++++..+-+.   .|.+.-...-.+.++++...|+-++|-++    +..+..+. +-|+.|.+.|.+..|
T Consensus       563 aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~el----k~sdgd~l-aaiqlyika~~p~~a  634 (1636)
T KOG3616|consen  563 AIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAEL----KESDGDGL-AAIQLYIKAGKPAKA  634 (1636)
T ss_pred             HHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhh----ccccCccH-HHHHHHHHcCCchHH
Confidence            34455555666666655332   34333334444455555556666655433    22222222 346667777777666


Q ss_pred             HHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCC
Q 038522          116 LLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERK  195 (590)
Q Consensus       116 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  195 (590)
                      .+....-.+  +..|......+..++.+..-++.|-.+|+.+..-         ..-+.+|-+-.-+.+|.++-+-.-..
T Consensus       635 ~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d~---------dkale~fkkgdaf~kaielarfafp~  703 (1636)
T KOG3616|consen  635 ARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHDF---------DKALECFKKGDAFGKAIELARFAFPE  703 (1636)
T ss_pred             HHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhCH---------HHHHHHHHcccHHHHHHHHHHhhCcH
Confidence            554322111  2345555555555555555555555555554321         11223333323344444443322111


Q ss_pred             Ccc-hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHH
Q 038522          196 DVV-SWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLI  274 (590)
Q Consensus       196 ~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  274 (590)
                      .++ .-...-..+.+.|+++.|+.-|-+..         .....+.+....+.+.+|..+++.+....  ....-|..+.
T Consensus       704 evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk--~~s~yy~~ia  772 (1636)
T KOG3616|consen  704 EVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIA  772 (1636)
T ss_pred             HHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHH
Confidence            111 11122233444555555555543321         12233444555566666666666555442  2223445556


Q ss_pred             HHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHH
Q 038522          275 DVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDM  325 (590)
Q Consensus       275 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~  325 (590)
                      +.|...|+++.|+++|.+.     ..++-.|..|.+.|+ +..|.++-.+.
T Consensus       773 dhyan~~dfe~ae~lf~e~-----~~~~dai~my~k~~k-w~da~kla~e~  817 (1636)
T KOG3616|consen  773 DHYANKGDFEIAEELFTEA-----DLFKDAIDMYGKAGK-WEDAFKLAEEC  817 (1636)
T ss_pred             HHhccchhHHHHHHHHHhc-----chhHHHHHHHhcccc-HHHHHHHHHHh
Confidence            6666666666666666543     224445566666666 66666665544

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=9.2e-06  Score=73.79  Aligned_cols=263  Identities=10%  Similarity=0.045  Sum_probs=161.9

Q ss_pred             ChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCC---ccchHHHHHH
Q 038522          231 DCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTD---IISCTALISG  307 (590)
Q Consensus       231 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~l~~~  307 (590)
                      |......+...+...|+.+.+...|+.....+ +-+..........+...|+.++...+...+...+   ...|-.-...
T Consensus       231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~  309 (564)
T KOG1174|consen  231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQL  309 (564)
T ss_pred             cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhh
Confidence            44444555555566666666666666555432 1111112222233455566666665555553332   2222222233


Q ss_pred             HHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHH
Q 038522          308 FARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIAD  387 (590)
Q Consensus       308 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  387 (590)
                      +...++ +..|+.+-++.++.. +-+...+..--..+...++.+.|.-.|+.++...+ .+...|.-|++.|...|++.+
T Consensus       310 l~~~K~-~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kE  386 (564)
T KOG1174|consen  310 LYDEKK-FERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKE  386 (564)
T ss_pred             hhhhhh-HHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHH
Confidence            334455 667777766665432 12223333333455566777777777776665542 367888888999988888888


Q ss_pred             HHHHHHhcC---CCCcchHHHHH-HHHH-hcCCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCChHHHHHHHHHH
Q 038522          388 ANRAFDEMG---DKNVISWTSLI-AGYA-KHGYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGLTCEGWELFTDM  461 (590)
Q Consensus       388 A~~~~~~~~---~~~~~~~~~l~-~~~~-~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~  461 (590)
                      |.-+-+...   ..+..+.+.+. ..+. ...--++|..++++...  +.|+ ....+.+...|...|..+.++.++++.
T Consensus       387 A~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~  464 (564)
T KOG1174|consen  387 ANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKH  464 (564)
T ss_pred             HHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHH
Confidence            876655433   22333333331 2221 12224788888888776  4776 346677788899999999999999999


Q ss_pred             HhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC
Q 038522          462 INKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT  502 (590)
Q Consensus       462 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  502 (590)
                      ..   ..||....+.|.+.+...+.+++|++.|..+ .+.|+
T Consensus       465 L~---~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~  503 (564)
T KOG1174|consen  465 LI---IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPK  503 (564)
T ss_pred             Hh---hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCcc
Confidence            84   4799999999999999999999999999887 66664

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.05  E-value=1.3e-07  Score=87.74  Aligned_cols=228  Identities=10%  Similarity=-0.007  Sum_probs=151.7

Q ss_pred             hHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHH
Q 038522          315 SKEAFDLFKDMILKK-MGID--DVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRA  391 (590)
Q Consensus       315 ~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  391 (590)
                      .+.++.-+.+++... ..|+  ...+......+...|+.+.|...++...+..+. ++..|+.+...+...|++++|...
T Consensus        42 ~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~  120 (296)
T PRK11189         42 QEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEA  120 (296)
T ss_pred             HHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            566666666666432 2222  233555555667778888888888777776543 678888999999999999999999


Q ss_pred             HHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCC
Q 038522          392 FDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRIL  468 (590)
Q Consensus       392 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  468 (590)
                      |++..+  | +..+|..+...+...|++++|++.+++..+.  .|+..........+...++.++|...+++....  ..
T Consensus       121 ~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~  196 (296)
T PRK11189        121 FDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LD  196 (296)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CC
Confidence            998864  4 3467888888899999999999999999875  564332222222344667899999999776543  23


Q ss_pred             CChhHHHHHHHHHHhcCChHHH--HHHHHhc-CCC----C-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC-CCcch
Q 038522          469 PRAEHFSCVVDLFARRGQLESA--YNMIRQM-NIK----P-TASLWSAILGACSIYGNTSLGELAARNLFDMEP-EKSVN  539 (590)
Q Consensus       469 ~~~~~~~~l~~~~~~~g~~~~A--~~~~~~~-~~~----p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~  539 (590)
                      |+... ..+.  ....|+..++  .+.+.+. ...    | ....|..+...+...|++++|+..|+++++.+| +....
T Consensus       197 ~~~~~-~~~~--~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~  273 (296)
T PRK11189        197 KEQWG-WNIV--EFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEH  273 (296)
T ss_pred             ccccH-HHHH--HHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHH
Confidence            33222 2222  3335555433  3333322 111    1 235788889999999999999999999999997 44444


Q ss_pred             HHHHHHHHHhc
Q 038522          540 YVVLSNIYTAA  550 (590)
Q Consensus       540 ~~~l~~~~~~~  550 (590)
                      ...++......
T Consensus       274 ~~~~~e~~~~~  284 (296)
T PRK11189        274 RYALLELALLG  284 (296)
T ss_pred             HHHHHHHHHHH
Confidence            44455544433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.03  E-value=1.9e-08  Score=91.64  Aligned_cols=147  Identities=11%  Similarity=0.072  Sum_probs=80.1

Q ss_pred             HHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH----hcC
Q 038522          410 YAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA----RRG  485 (590)
Q Consensus       410 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g  485 (590)
                      +...|++++|++++++.      .+.......+..+.+.++++.|.+.++.|.+   ...| .+...+..++.    -.+
T Consensus       112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTT
T ss_pred             HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCch
Confidence            33445555555555431      2334444455556666666666666666652   2222 22222333322    223


Q ss_pred             ChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh-HHHHHHHHH
Q 038522          486 QLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAW-DNARKTRKL  562 (590)
Q Consensus       486 ~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~-~~A~~~~~~  562 (590)
                      ++.+|..+|+++  ...+++.+.+.+..++...|++++|.++++++++.+|.++.++..++.+....|+. +.+.+++.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            566666666666  34456666666666666777777777777777777777777777777666666666 455666666


Q ss_pred             hhhc
Q 038522          563 MEER  566 (590)
Q Consensus       563 ~~~~  566 (590)
                      ++..
T Consensus       262 L~~~  265 (290)
T PF04733_consen  262 LKQS  265 (290)
T ss_dssp             CHHH
T ss_pred             HHHh
Confidence            6553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.03  E-value=9.5e-09  Score=96.76  Aligned_cols=215  Identities=16%  Similarity=0.130  Sum_probs=167.4

Q ss_pred             hchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHH
Q 038522          345 ANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK---NVISWTSLIAGYAKHGYGHEAIE  421 (590)
Q Consensus       345 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~  421 (590)
                      .+.|++..|.-.|+..++..+. +...|..|.......++-..|+.-+.+..+-   |....-.|.-.|...|.-..|+.
T Consensus       296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHH
Confidence            4556677777777777776654 6777777877888888888888888877753   45567777788888888889999


Q ss_pred             HHHHHHHcCCCCcHHHHHHHH-----------HHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 038522          422 LYKKMKHEGMVPNDVTFLSLL-----------FACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESA  490 (590)
Q Consensus       422 ~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  490 (590)
                      .++.-+...  |..   ..+.           ..+.....+....++|-++....+..+|+.+...|.-.|.-.|++++|
T Consensus       375 ~L~~Wi~~~--p~y---~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  375 MLDKWIRNK--PKY---VHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHhC--ccc---hhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            988876532  110   0000           112222234455666666665546668889999999999999999999


Q ss_pred             HHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          491 YNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       491 ~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .+-|+.+ ..+| |...||-|...+....+.++|+..|.+++++.|.-..+.+.|+..|+..|.|+||.+.|-..+.
T Consensus       450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~  526 (579)
T KOG1125|consen  450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS  526 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence            9999998 6667 5678999999999999999999999999999999999999999999999999999999988766

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=4.8e-07  Score=84.85  Aligned_cols=399  Identities=13%  Similarity=0.039  Sum_probs=196.2

Q ss_pred             HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CC-cchHHHHHHHHHhcCCchH
Q 038522          139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--KD-VVSWNAMIGGLAMQGFNDD  215 (590)
Q Consensus       139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~  215 (590)
                      .+....|+++.|...|-..+... +++...|..-..+|+..|++++|++=-.+-.+  |+ ...|+-...++.-.|++++
T Consensus        10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~e   88 (539)
T KOG0548|consen   10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEE   88 (539)
T ss_pred             HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHH
Confidence            34556778888888887777764 34677777777788888888777665544433  33 3457777777777778888


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHH-----HHHHHhcCChHHHHHHH
Q 038522          216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSL-----IDVYAKYGSIRSAYQLY  290 (590)
Q Consensus       216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~g~~~~a~~~~  290 (590)
                      |+.-|.+-.+.. +-+...+..+..+.    ..+.+.     +.   .-.++..+..+     .+.+.....+..-++.+
T Consensus        89 A~~ay~~GL~~d-~~n~~L~~gl~~a~----~~~~~~-----~~---~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~  155 (539)
T KOG0548|consen   89 AILAYSEGLEKD-PSNKQLKTGLAQAY----LEDYAA-----DQ---LFTKPYFHEKLANLPLTNYSLSDPAYVKILEII  155 (539)
T ss_pred             HHHHHHHHhhcC-CchHHHHHhHHHhh----hHHHHh-----hh---hccCcHHHHHhhcChhhhhhhccHHHHHHHHHh
Confidence            887777766542 22344444444444    111000     00   01111111111     11111111111111111


Q ss_pred             HhccCCCccc---hHHHHHHHHhcCCChHHH-HHHHHHH-HHcCCCC----------------------CHHHHHHHHHH
Q 038522          291 RSMLKTDIIS---CTALISGFARDDNHSKEA-FDLFKDM-ILKKMGI----------------------DDVILCLMLNI  343 (590)
Q Consensus       291 ~~~~~~~~~~---~~~l~~~~~~~~~~~~~a-~~~~~~~-~~~~~~p----------------------~~~~~~~ll~~  343 (590)
                      ..-+. +...   ...++.+...... .+.- ..--..+ ...+..|                      -..-...+..+
T Consensus       156 ~~~p~-~l~~~l~d~r~m~a~~~l~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna  233 (539)
T KOG0548|consen  156 QKNPT-SLKLYLNDPRLMKADGQLKG-VDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA  233 (539)
T ss_pred             hcCcH-hhhcccccHHHHHHHHHHhc-CccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence            11100 0000   0111111111000 0000 0000000 0000011                      01123345566


Q ss_pred             HhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHH-------HHHHHHHhc
Q 038522          344 CANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNV---ISWT-------SLIAGYAKH  413 (590)
Q Consensus       344 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~-------~l~~~~~~~  413 (590)
                      ..+..+++.+.+-+.......  -++.-++....+|...|.+......-+...+...   .-|+       .+..++.+.
T Consensus       234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~  311 (539)
T KOG0548|consen  234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKR  311 (539)
T ss_pred             HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            666777777877777777766  4566667777788888877777666655443211   1222       234456667


Q ss_pred             CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCChHHHHH
Q 038522          414 GYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA-EHFSCVVDLFARRGQLESAYN  492 (590)
Q Consensus       414 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~  492 (590)
                      ++++.++..|++.......|+..+         +....+++....+...   -+.|.. .-...-...+.+.|++..|+.
T Consensus       312 ~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~  379 (539)
T KOG0548|consen  312 EDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVK  379 (539)
T ss_pred             HhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHH
Confidence            788888888888766544443322         1112222222222222   222321 111112344555666666666


Q ss_pred             HHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          493 MIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       493 ~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      .|.++ ...| |...|..-..+|.+.|++..|+.-.+..++++|+....|..=+.++....+|+.|.+.|++..+..
T Consensus       380 ~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  380 HYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            66665 2223 445555555555666666666666666666666666666666666666666666666666554433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.00  E-value=4.6e-06  Score=83.97  Aligned_cols=275  Identities=11%  Similarity=-0.038  Sum_probs=143.5

Q ss_pred             HHHHHHHhcc---CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHH
Q 038522          285 SAYQLYRSML---KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAF  361 (590)
Q Consensus       285 ~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  361 (590)
                      .|...++..+   ..+...||.|... ...|+ +.-+..-|-+-.... +....+|..+--.+....+++.|...+....
T Consensus       801 ~Ai~c~KkaV~L~ann~~~WnaLGVl-sg~gn-va~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d~E~A~~af~~~q  877 (1238)
T KOG1127|consen  801 TAIRCCKKAVSLCANNEGLWNALGVL-SGIGN-VACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQDFEHAEPAFSSVQ  877 (1238)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHh-hccch-hhhhhhhhhhhhhcc-ccchhheeccceeEEecccHHHhhHHHHhhh
Confidence            4555555553   2344556555444 44445 555555555444331 3344556666666677777888888777776


Q ss_pred             HhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC-----C---CCcchHHHHHHHHHhcCCchHHHHHH----------
Q 038522          362 KYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG-----D---KNVISWTSLIAGYAKHGYGHEAIELY----------  423 (590)
Q Consensus       362 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~---~~~~~~~~l~~~~~~~~~~~~a~~~~----------  423 (590)
                      ...+. +...+--........|+.-++..+|..-.     +   ++..-|-........+|+.++-+..-          
T Consensus       878 SLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al  956 (1238)
T KOG1127|consen  878 SLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLAL  956 (1238)
T ss_pred             hcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHH
Confidence            65543 22222222222234566666666665411     1   23333333334444555544433332          


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHH----HHHHHHHhcCChHHHHHHHHhcCC
Q 038522          424 KKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFS----CVVDLFARRGQLESAYNMIRQMNI  499 (590)
Q Consensus       424 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~  499 (590)
                      ++... |.+-+...|..........+.+..|.+...+...-...+-+...|+    .+.+.++..|.++.|..-+.....
T Consensus       957 ~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~ 1035 (1238)
T KOG1127|consen  957 SYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWM 1035 (1238)
T ss_pred             HHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccch
Confidence            23332 2233456666666666667777776666655543212233444444    334455666777766655544422


Q ss_pred             CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          500 KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       500 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ..+..+...-+.. .-.|+++++.+.|++++.+...+   ......++.+...+|..+.|+.++-+...
T Consensus      1036 evdEdi~gt~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1036 EVDEDIRGTDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred             hHHHHHhhhhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence            2233222222222 34578888888888887554322   23445566667777788888877766654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.99  E-value=1.7e-07  Score=78.17  Aligned_cols=191  Identities=14%  Similarity=0.115  Sum_probs=135.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhcc
Q 038522          373 NALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHT  448 (590)
Q Consensus       373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~  448 (590)
                      ..|.-.|...|++..|..-+++..+.|+   .+|..+...|.+.|+.+.|.+.|++..+.  .| +....|....-+|..
T Consensus        39 lqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~~GdVLNNYG~FLC~q  116 (250)
T COG3063          39 LQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APNNGDVLNNYGAFLCAQ  116 (250)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCCccchhhhhhHHHHhC
Confidence            4456677788888888888887774333   46777777788888888888888887764  55 455666666667777


Q ss_pred             CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHH
Q 038522          449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAA  526 (590)
Q Consensus       449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~  526 (590)
                      |.+++|.+.|++........--..+|..+.-+..+.|+.+.|.+.|++. ...| .+.+...+.......|++..|...+
T Consensus       117 g~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~  196 (250)
T COG3063         117 GRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLYL  196 (250)
T ss_pred             CChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHHH
Confidence            7888888888888765222223567777777777888888888888777 4344 3456667777777888888888888


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          527 RNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       527 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ++.....+.....+...+++-...|+-+.|.++=..+.+
T Consensus       197 ~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         197 ERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            888766665666676677777777887777776554433

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.99  E-value=2.7e-08  Score=90.67  Aligned_cols=157  Identities=11%  Similarity=0.112  Sum_probs=106.1

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhh----ccCC
Q 038522          375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACS----HTGL  450 (590)
Q Consensus       375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~~~  450 (590)
                      ...++...|++++|++++...  .+.......+..+.+.++++.|.+.++.|.+.  ..|. +...+..++.    ..+.
T Consensus       108 ~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~  182 (290)
T PF04733_consen  108 AATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK  182 (290)
T ss_dssp             HHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence            344556677788877777665  45556666778888888888888888888763  3443 3333444333    2335


Q ss_pred             hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCc-hHHHHHHH
Q 038522          451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNT-SLGELAAR  527 (590)
Q Consensus       451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~-~~a~~~~~  527 (590)
                      +.+|..+|+++.++  ..+++.+.+.+..++...|++++|.+++++. ...| ++.++..++-.....|+. +.+.+.+.
T Consensus       183 ~~~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  183 YQDAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCHHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            88888888888764  4567788888888888889999998888887 3333 556666677666777777 66778888


Q ss_pred             HHhcCCCCCcc
Q 038522          528 NLFDMEPEKSV  538 (590)
Q Consensus       528 ~~~~~~p~~~~  538 (590)
                      ++....|+++.
T Consensus       261 qL~~~~p~h~~  271 (290)
T PF04733_consen  261 QLKQSNPNHPL  271 (290)
T ss_dssp             HCHHHTTTSHH
T ss_pred             HHHHhCCCChH
Confidence            88888885543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=4.6e-07  Score=84.98  Aligned_cols=177  Identities=12%  Similarity=0.082  Sum_probs=111.1

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHH-HHHHHHHHhhccCChHH
Q 038522          375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDV-TFLSLLFACSHTGLTCE  453 (590)
Q Consensus       375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~  453 (590)
                      +..+|.+.++++.|+..|++...+...     -....+....+++....+...-  +.|... -...-...+.+.|++..
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt-----~~~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~  376 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRT-----PDLLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPE  376 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcC-----HHHHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHH
Confidence            334566667777787777775422111     0111222333444444444332  234321 11222556778889999


Q ss_pred             HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522          454 GWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFD  531 (590)
Q Consensus       454 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  531 (590)
                      |+..|.+++++  .+-|...|..-.-+|.+.|.+.+|++-.+.. ...|+ ...|.--..++....+++.|.+.|++.++
T Consensus       377 Av~~YteAIkr--~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  377 AVKHYTEAIKR--DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHHhc--CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999888865  2335778888888888999988888877776 44444 33454445555666789999999999999


Q ss_pred             CCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522          532 MEPEKSVNYVVLSNIYTAAGAWDNARKTR  560 (590)
Q Consensus       532 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  560 (590)
                      .+|.+..+...+.+++..+.......++.
T Consensus       455 ~dp~~~e~~~~~~rc~~a~~~~~~~ee~~  483 (539)
T KOG0548|consen  455 LDPSNAEAIDGYRRCVEAQRGDETPEETK  483 (539)
T ss_pred             cCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence            99988888888887777543333334433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.95  E-value=9.2e-05  Score=81.38  Aligned_cols=155  Identities=8%  Similarity=-0.077  Sum_probs=72.5

Q ss_pred             HHHHHHHhcCChHHHHHHHhccCCCCcch--HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCCh
Q 038522          171 ALLDLYAKCGWIEDAWILFERIERKDVVS--WNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIEL  248 (590)
Q Consensus       171 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~  248 (590)
                      .....+...|++.+|..........+...  ...........|+++.+...+..+.......+..........+...|++
T Consensus       346 raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~  425 (903)
T PRK04841        346 AAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY  425 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence            34445666777777766665554332111  1112233445677776666665542211111222222333344566777


Q ss_pred             hHHHHHHHHHHHhCC------CCC--hhHHHHHHHHHHhcCChHHHHHHHHhccC--C--Cc----cchHHHHHHHHhcC
Q 038522          249 MKISQIHDLIIKLGL------ESS--NKLTGSLIDVYAKYGSIRSAYQLYRSMLK--T--DI----ISCTALISGFARDD  312 (590)
Q Consensus       249 ~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~--~~----~~~~~l~~~~~~~~  312 (590)
                      +++...+......--      .+.  ......+...+...|+++.|...+++...  +  +.    ...+.+...+...|
T Consensus       426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G  505 (903)
T PRK04841        426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG  505 (903)
T ss_pred             HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence            777777776654310      011  11112223334556666666666655421  1  11    11223333344455


Q ss_pred             CChHHHHHHHHHHH
Q 038522          313 NHSKEAFDLFKDMI  326 (590)
Q Consensus       313 ~~~~~a~~~~~~~~  326 (590)
                      + +++|...+.+..
T Consensus       506 ~-~~~A~~~~~~al  518 (903)
T PRK04841        506 E-LARALAMMQQTE  518 (903)
T ss_pred             C-HHHHHHHHHHHH
Confidence            5 666666655554

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.95  E-value=3.3e-06  Score=73.17  Aligned_cols=190  Identities=11%  Similarity=0.012  Sum_probs=101.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHhccCCCC---CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHH-HHHHhc
Q 038522           68 STKVIIFYAKVGDVLSARKAFDRMPER---NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSA-LRACAR  143 (590)
Q Consensus        68 ~~~li~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-l~~~~~  143 (590)
                      +.+.+..+++..++++|++++....++   +....+.|..+|-...++..|-+.++++-.  ..|...-|..- ...+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~qYrlY~AQSLY~   90 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELEQYRLYQAQSLYK   90 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHHHHHHH
Confidence            344444455555666666655554442   333455555566666666666666666654  23444433321 223445


Q ss_pred             cCchhhHHHHHHHHHhcCCCCchHHHHHHHH--HHHhcCChHHHHHHHhccC-CCCcchHHHHHHHHHhcCCchHHHHHH
Q 038522          144 MRWLQGGRMIQGSIQKGRFVENLFVKSALLD--LYAKCGWIEDAWILFERIE-RKDVVSWNAMIGGLAMQGFNDDSFWLF  220 (590)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~  220 (590)
                      .+.+..|..+...|.+.   |+...-..-+.  ..-..+++..+..+.+..+ +.+..+.+...-...+.|+++.|++-|
T Consensus        91 A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkF  167 (459)
T KOG4340|consen   91 ACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKF  167 (459)
T ss_pred             hcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHH
Confidence            55566666665555442   11111111111  1223466666777777666 344455555555556677777777777


Q ss_pred             HHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCC
Q 038522          221 RSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGL  263 (590)
Q Consensus       221 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  263 (590)
                      +...+-+--.....|+..+.. -+.|+++.|.+...+++++|+
T Consensus       168 qaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~  209 (459)
T KOG4340|consen  168 QAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGI  209 (459)
T ss_pred             HHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhh
Confidence            776655434444556654433 355677777777777776664

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.92  E-value=1.9e-06  Score=74.66  Aligned_cols=417  Identities=12%  Similarity=0.054  Sum_probs=245.1

Q ss_pred             cCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CCcchHHH
Q 038522          125 SGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--KDVVSWNA  202 (590)
Q Consensus       125 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~  202 (590)
                      .|+.....-+.+++..+.+..++..|.+++..-.+.. +.+....+.|..+|-...++..|-..++.+..  |...-|..
T Consensus         4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl   82 (459)
T KOG4340|consen    4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL   82 (459)
T ss_pred             ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence            3444455567788888888889999999888777763 33667788888889899999999999988875  43333433


Q ss_pred             -HHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH--hccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 038522          203 -MIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRA--SVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAK  279 (590)
Q Consensus       203 -li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  279 (590)
                       -...+.+.+.+..|+++...|.+.   |+...-..-+.+  .-+.+++..+..++++.-..   .+..+.+.......+
T Consensus        83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllyk  156 (459)
T KOG4340|consen   83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYK  156 (459)
T ss_pred             HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchheeec
Confidence             245677888999999998888653   332222222222  23567777777777665432   233344444555667


Q ss_pred             cCChHHHHHHHHhccCC----CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhchhhhHhHH
Q 038522          280 YGSIRSAYQLYRSMLKT----DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVI-LCLMLNICANVASLNLGR  354 (590)
Q Consensus       280 ~g~~~~a~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~  354 (590)
                      .|+++.|.+-|+...+-    ....||..+..|. .++ ++.|+++..+++++|++..+.. ......+- ....+..-.
T Consensus       157 egqyEaAvqkFqaAlqvsGyqpllAYniALaHy~-~~q-yasALk~iSEIieRG~r~HPElgIGm~tegi-DvrsvgNt~  233 (459)
T KOG4340|consen  157 EGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYS-SRQ-YASALKHISEIIERGIRQHPELGIGMTTEGI-DVRSVGNTL  233 (459)
T ss_pred             cccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHh-hhh-HHHHHHHHHHHHHhhhhcCCccCccceeccC-chhcccchH
Confidence            88888888888777432    3345666655554 455 7888888888888876532210 00000000 000000000


Q ss_pred             HHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 038522          355 QIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD-----KNVISWTSLIAGYAKHGYGHEAIELYKKMKHE  429 (590)
Q Consensus       355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~  429 (590)
                      .+..       +.-+..+|.-...+.+.|+++.|.+-+-.|+.     .|++|...+.-.- ..+++.+..+-++-+.+.
T Consensus       234 ~lh~-------Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~  305 (459)
T KOG4340|consen  234 VLHQ-------SALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQ  305 (459)
T ss_pred             HHHH-------HHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhc
Confidence            0000       00122334445566789999999999999983     4777776654332 234566666666666654


Q ss_pred             CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH-hcCChHHHHHHHHhcCCCCCHhHHH
Q 038522          430 GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA-RRGQLESAYNMIRQMNIKPTASLWS  507 (590)
Q Consensus       430 g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~p~~~~~~  507 (590)
                        .| -..||..++-.|++..-++.|..++.+-....-.-.+...|+ |++++. ..-..++|.+-+..+...-....-.
T Consensus       306 --nPfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRk  382 (459)
T KOG4340|consen  306 --NPFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRK  382 (459)
T ss_pred             --CCCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence              44 567888899899999889988888755432100011233333 344443 3456777777665541000000011


Q ss_pred             HHHHHHH-hcCC----chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          508 AILGACS-IYGN----TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       508 ~l~~~~~-~~~~----~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ..+..-. +..+    ...+++-|++.+++.-   ......++.|.+..++.-+.++|..-.+
T Consensus       383 lAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Sve  442 (459)
T KOG4340|consen  383 LAIQVQEARHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVE  442 (459)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHh
Confidence            1111111 1112    1234444555554431   2567778899999999999999987655

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.91  E-value=1.9e-06  Score=76.15  Aligned_cols=313  Identities=12%  Similarity=0.070  Sum_probs=176.3

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH---HHhccCCChhHHHHHHHHHHHhCCCCChhHHH-HHHH
Q 038522          200 WNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSIL---RASVGGIELMKISQIHDLIIKLGLESSNKLTG-SLID  275 (590)
Q Consensus       200 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll---~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~  275 (590)
                      .--+-..+...|++..|+.-|...++.    |+..|.++.   ..|...|+...|..=+...++.  +||-..-. .-..
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~  114 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV  114 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence            444566677777888888877777643    333444433   3455666666666666665543  44432211 1123


Q ss_pred             HHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHH
Q 038522          276 VYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQ  355 (590)
Q Consensus       276 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  355 (590)
                      .+.+.|.++.|..-|+.+.+.++..           +. ..++.+-+....+      .......+..+...|+...++.
T Consensus       115 vllK~Gele~A~~DF~~vl~~~~s~-----------~~-~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai~  176 (504)
T KOG0624|consen  115 VLLKQGELEQAEADFDQVLQHEPSN-----------GL-VLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAIE  176 (504)
T ss_pred             hhhhcccHHHHHHHHHHHHhcCCCc-----------ch-hHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHHH
Confidence            4566777777777777665433210           00 1111111111000      0112223334445566677777


Q ss_pred             HHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 038522          356 IHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV  432 (590)
Q Consensus       356 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~  432 (590)
                      ....+.+.. +.+...+..-..+|...|++..|+.=+....   ..+..++--+-..+...|+.+.++...++..+  +.
T Consensus       177 ~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ld  253 (504)
T KOG0624|consen  177 MITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LD  253 (504)
T ss_pred             HHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cC
Confidence            766666643 3567777777778888888888876555443   34555666666677777888888877777776  46


Q ss_pred             CcHHH----HHHH---------HHHhhccCChHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHH
Q 038522          433 PNDVT----FLSL---------LFACSHTGLTCEGWELFTDMINKYRILPR-----AEHFSCVVDLFARRGQLESAYNMI  494 (590)
Q Consensus       433 p~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~  494 (590)
                      ||...    |..+         +......++|.++.+..+...+.   .|.     ...+..+-.++...|++-+|++..
T Consensus       254 pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC  330 (504)
T KOG0624|consen  254 PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQC  330 (504)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence            65432    1111         11223445666666666666543   333     122334445555667777777777


Q ss_pred             Hhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522          495 RQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV  542 (590)
Q Consensus       495 ~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  542 (590)
                      .+. .+.|| ..++..-..+|.-..+++.|+.-|+++.+.+|+|..+-..
T Consensus       331 ~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~reG  380 (504)
T KOG0624|consen  331 KEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAREG  380 (504)
T ss_pred             HHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence            666 55554 5566666666766777777777777777777766554443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.89  E-value=1.6e-07  Score=84.52  Aligned_cols=180  Identities=16%  Similarity=0.103  Sum_probs=113.1

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-c---chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH----HH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD--KN-V---ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND----VT  437 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~  437 (590)
                      ....+..+...+.+.|++++|...|+++.+  |+ .   ..+..+..++...|++++|...++++.+.  .|+.    .+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a  109 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA  109 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence            445556666667777777777777776653  22 1   24555666777777777777777777664  3321    13


Q ss_pred             HHHHHHHhhcc--------CChHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHH
Q 038522          438 FLSLLFACSHT--------GLTCEGWELFTDMINKYRILPRA-EHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSA  508 (590)
Q Consensus       438 ~~~ll~~~~~~--------~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  508 (590)
                      +..+..++...        |++++|.+.++.+.+.   .|+. .....+....    ......           ......
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~----~~~~~~-----------~~~~~~  171 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD----YLRNRL-----------AGKELY  171 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH----HHHHHH-----------HHHHHH
Confidence            44444444433        5666777777777654   3332 1221111110    000000           001124


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          509 ILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      +...+...|+++.|+..++++++..|++   +.++..++.+|...|++++|..+++.+..+.
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~  233 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY  233 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            5566889999999999999999887754   4689999999999999999999999887654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.87  E-value=7.8e-06  Score=78.98  Aligned_cols=197  Identities=10%  Similarity=-0.040  Sum_probs=125.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCcH--HHHHHHHH
Q 038522          370 AVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGM-VPND--VTFLSLLF  443 (590)
Q Consensus       370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~  443 (590)
                      .....+...+...|++++|...+++..+   .+...+..+...+...|++++|...+++...... .|+.  ..|..+..
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~  194 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLAL  194 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHH
Confidence            3444566677888889999888888763   3455677788888889999999999888776421 1222  34556777


Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCChhHH-H--HHHHHHHhcCChHHHHHH--H-Hhc-CCCCC---HhHHHHHHHHH
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPRAEHF-S--CVVDLFARRGQLESAYNM--I-RQM-NIKPT---ASLWSAILGAC  513 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~--~l~~~~~~~g~~~~A~~~--~-~~~-~~~p~---~~~~~~l~~~~  513 (590)
                      .+...|++++|...+++........+..... +  .++..+...|....+.++  + ... ...|.   .........++
T Consensus       195 ~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~  274 (355)
T cd05804         195 FYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALAL  274 (355)
T ss_pred             HHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            8888899999999998876331111222111 1  223333444543333332  2 111 11111   12223455667


Q ss_pred             HhcCCchHHHHHHHHHhcCCC---------CCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          514 SIYGNTSLGELAARNLFDMEP---------EKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       514 ~~~~~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      ...|+.+.|...++.+....-         .........+.++...|++++|.+.+......
T Consensus       275 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         275 AGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             hcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            788999999999988864221         12444566778889999999999999988764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.87  E-value=3.5e-05  Score=77.94  Aligned_cols=345  Identities=12%  Similarity=0.045  Sum_probs=168.1

Q ss_pred             HHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH--HhccCchhh
Q 038522           75 YAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRA--CARMRWLQG  149 (590)
Q Consensus        75 ~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~--~~~~~~~~~  149 (590)
                      |.+.++...|+.-|+...+   .|...|..+..+|.+.|++..|+++|.+...  +.|+.. |.....+  .+..|.+.+
T Consensus       572 yLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP~s~-y~~fk~A~~ecd~GkYke  648 (1238)
T KOG1127|consen  572 YLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRPLSK-YGRFKEAVMECDNGKYKE  648 (1238)
T ss_pred             ccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCcHhH-HHHHHHHHHHHHhhhHHH
Confidence            3344444444444444333   2566788899999999999999999988876  445433 3222222  356788888


Q ss_pred             HHHHHHHHHhcC------CCCchHHHHHHHHHHHhcCChHHHHHHHhccCC-----------CCcchHHHHHHHHHhcCC
Q 038522          150 GRMIQGSIQKGR------FVENLFVKSALLDLYAKCGWIEDAWILFERIER-----------KDVVSWNAMIGGLAMQGF  212 (590)
Q Consensus       150 a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~  212 (590)
                      +...++.....-      ..--..++-.+...+...|=..+|..++++-.+           .+...|-.+-++|.-.-.
T Consensus       649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q  728 (1238)
T KOG1127|consen  649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ  728 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence            888887776531      011112222222222222322233333322111           122223222222111000


Q ss_pred             --ch----HHHHHH-HHHHHcCCCC--------------------ChhhHHHHHHHhc-------cCC-ChhHHHHHHHH
Q 038522          213 --ND----DSFWLF-RSMMRQGMKP--------------------DCFTLGSILRASV-------GGI-ELMKISQIHDL  257 (590)
Q Consensus       213 --~~----~a~~~~-~~m~~~~~~p--------------------~~~~~~~ll~~~~-------~~~-~~~~a~~~~~~  257 (590)
                        ++    ....+| .+....+.-|                    +..++..+...+.       ..+ +...|...+..
T Consensus       729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk  808 (1238)
T KOG1127|consen  729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK  808 (1238)
T ss_pred             hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence              00    001111 1121112111                    1222222222211       112 22245555555


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---cCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH
Q 038522          258 IIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM---LKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD  334 (590)
Q Consensus       258 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~  334 (590)
                      .++.. ..+..+|+.|.-. ...|.+.-|...|-+-   .+....+|..+...+.+..+ ++.|...|...+... +.+.
T Consensus       809 aV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n~d-~E~A~~af~~~qSLd-P~nl  884 (1238)
T KOG1127|consen  809 AVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLENQD-FEHAEPAFSSVQSLD-PLNL  884 (1238)
T ss_pred             HHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEeccc-HHHhhHHHHhhhhcC-chhh
Confidence            55432 3344555555443 5556777777666554   23355677777777777777 888888888876442 2334


Q ss_pred             HHHHHHHHHHhchhhhHhHHHHHHHHHH----hCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC------------C
Q 038522          335 VILCLMLNICANVASLNLGRQIHAFAFK----YQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD------------K  398 (590)
Q Consensus       335 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------~  398 (590)
                      ..+..........|+.-+...++..-..    .|--+...-+-+........|+.++-+..-+++..            |
T Consensus       885 ~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p  964 (1238)
T KOG1127|consen  885 VQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGHP  964 (1238)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCc
Confidence            4444444444455666566666555221    22233444444444455566666655555555431            2


Q ss_pred             -CcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038522          399 -NVISWTSLIAGYAKHGYGHEAIELYKKM  426 (590)
Q Consensus       399 -~~~~~~~l~~~~~~~~~~~~a~~~~~~m  426 (590)
                       ....|.+.....-+.+.+..|.+...+.
T Consensus       965 ~~~fAy~~~gstlEhL~ey~~a~ela~Rl  993 (1238)
T KOG1127|consen  965 QLCFAYAANGSTLEHLEEYRAALELATRL  993 (1238)
T ss_pred             chhHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence             3345666666566666666666665554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.85  E-value=8e-08  Score=82.66  Aligned_cols=127  Identities=11%  Similarity=0.126  Sum_probs=96.0

Q ss_pred             cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHH-HhcCC--chHH
Q 038522          448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGAC-SIYGN--TSLG  522 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~-~~~~~--~~~a  522 (590)
                      .++.+++...++...+.  -+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            55666777777776653  2445778888888888888888888888887 5455 556666666653 56666  5889


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCCCceE
Q 038522          523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSF  576 (590)
Q Consensus       523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  576 (590)
                      .++++++++.+|+++.++..++..+...|++++|+..++++.+.....++....
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~  183 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQL  183 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHH
Confidence            999999999999889999999999999999999999999888866554444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.85  E-value=6.8e-08  Score=93.60  Aligned_cols=210  Identities=15%  Similarity=0.131  Sum_probs=142.6

Q ss_pred             CCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522          364 QSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF  443 (590)
Q Consensus       364 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  443 (590)
                      +.+|-...-..+.+.+.+.|-...|..+|+++     ..|.-.+.+|...|+..+|..+..+-.++  +|++.-|..+.+
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD  465 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD  465 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence            34555555566777788888888888888775     35666777788888888888887777763  677888888777


Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchH
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSL  521 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~  521 (590)
                      ..-...-+++|.++.+....+        .-..+.....+.++++++.+.|+.- .+.| ...+|-.+.-+..+.++++.
T Consensus       466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence            777777777777777665432        1112222234467777777777654 3333 45667766666677777777


Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc-CCCceEEeecCccccccc
Q 038522          522 GELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK-NPGYSFLQSSKKNILLLE  588 (590)
Q Consensus       522 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  588 (590)
                      |.+.|...+.++|++...|+++..+|.+.|+..+|...+++..+-+.++ ..+..+..++-|+++|.|
T Consensus       538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ed  605 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFED  605 (777)
T ss_pred             HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHH
Confidence            7777777777777777777777777777777777777777777755333 345555566666666654

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.85  E-value=3.2e-05  Score=68.67  Aligned_cols=357  Identities=11%  Similarity=0.084  Sum_probs=211.3

Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHH---HHHHhcCCchHHHHHHHHHHHcCCCCChhhHH-HHHHH
Q 038522          166 LFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMI---GGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLG-SILRA  241 (590)
Q Consensus       166 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~ll~~  241 (590)
                      +.-..-+...+...|++..|+.-|....+-|+..|.++.   ..|...|+...|+.-+....+.  +||-..-. .-...
T Consensus        38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v  115 (504)
T KOG0624|consen   38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh
Confidence            333445667777888889999998888887777777765   4678888888888888887764  77754332 12234


Q ss_pred             hccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHH
Q 038522          242 SVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDL  321 (590)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~  321 (590)
                      +.+.|.++.|..=|+..++........     ..++.+.-..++-..+            ...+..+...|+ ...|+..
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~-----~eaqskl~~~~e~~~l------------~~ql~s~~~~GD-~~~ai~~  177 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLV-----LEAQSKLALIQEHWVL------------VQQLKSASGSGD-CQNAIEM  177 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchh-----HHHHHHHHhHHHHHHH------------HHHHHHHhcCCc-hhhHHHH
Confidence            678899999999999888764211110     1111111111111111            111222333444 5555555


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc-
Q 038522          322 FKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNV-  400 (590)
Q Consensus       322 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-  400 (590)
                      ...+++-. +.|...+..-..+|...|++..|+.-++.+-+.... +...+-.+...+...|+.+.++...++..+-|+ 
T Consensus       178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd  255 (504)
T KOG0624|consen  178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD  255 (504)
T ss_pred             HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc
Confidence            55555431 334444444445555555555555555544444333 333444455566677777777777777664322 


Q ss_pred             -c----hHHHH---------HHHHHhcCCchHHHHHHHHHHHcCCCCc--HH---HHHHHHHHhhccCChHHHHHHHHHH
Q 038522          401 -I----SWTSL---------IAGYAKHGYGHEAIELYKKMKHEGMVPN--DV---TFLSLLFACSHTGLTCEGWELFTDM  461 (590)
Q Consensus       401 -~----~~~~l---------~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~---~~~~ll~~~~~~~~~~~a~~~~~~~  461 (590)
                       .    .|-.+         +......++|.++++..+...+.  .|.  ..   .+..+-.++...+++.+|++...++
T Consensus       256 HK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~--ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ev  333 (504)
T KOG0624|consen  256 HKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN--EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEV  333 (504)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc--CCcccceeeeeeheeeecccccCCHHHHHHHHHHH
Confidence             1    12111         22345677888888888888775  443  22   3445556777889999999999999


Q ss_pred             HhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522          462 INKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN  539 (590)
Q Consensus       462 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  539 (590)
                      .   .+.|+ +.++..-..+|.-...++.|+.-|+.+ ...++...             ..+.++-.+++.+... ....
T Consensus       334 L---~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~-------------~reGle~Akrlkkqs~-kRDY  396 (504)
T KOG0624|consen  334 L---DIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTR-------------AREGLERAKRLKKQSG-KRDY  396 (504)
T ss_pred             H---hcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHH-------------HHHHHHHHHHHHHHhc-cchH
Confidence            8   55676 888888889999999999999999988 44444321             1122222233332222 2334


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          540 YVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       540 ~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      |-.|+  -.+.-...|..+.+.++-.
T Consensus       397 YKILG--VkRnAsKqEI~KAYRKlAq  420 (504)
T KOG0624|consen  397 YKILG--VKRNASKQEITKAYRKLAQ  420 (504)
T ss_pred             HHHhh--hcccccHHHHHHHHHHHHH
Confidence            44443  2344555677777777654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.82  E-value=1.2e-07  Score=77.13  Aligned_cols=92  Identities=10%  Similarity=-0.044  Sum_probs=52.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038522          476 CVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAW  553 (590)
Q Consensus       476 ~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  553 (590)
                      .+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++++|+++.++..++.++...|++
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCH
Confidence            3445555556666666655555 3333 4445555555556666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHHhhhcC
Q 038522          554 DNARKTRKLMEERS  567 (590)
Q Consensus       554 ~~A~~~~~~~~~~~  567 (590)
                      ++|++.++...+..
T Consensus       109 ~eAi~~~~~Al~~~  122 (144)
T PRK15359        109 GLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHHHhC
Confidence            66666666555533

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.81  E-value=0.00022  Score=70.93  Aligned_cols=140  Identities=13%  Similarity=0.133  Sum_probs=85.1

Q ss_pred             ccccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHh--------cCCCchhHHHHHHHHHH
Q 038522            5 RANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITN--------GYESNLHLSTKVIIFYA   76 (590)
Q Consensus         5 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~li~~~~   76 (590)
                      +-|..-|+.+.|.+..+.+    .+...|..+.+.|.+..+++-|.-++-.|...        ..+.+..+-....-...
T Consensus       736 SfyvtiG~MD~AfksI~~I----kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAi  811 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSIQFI----KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAI  811 (1416)
T ss_pred             eEEEEeccHHHHHHHHHHH----hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHH
Confidence            4566778888887766654    34456888888888888877777666665421        11112133333333445


Q ss_pred             hcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHH
Q 038522           77 KVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGS  156 (590)
Q Consensus        77 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  156 (590)
                      ..|.+++|+.++++-+.     |..|=..|-..|.+++|+++-+.--+  +.. ..||..-..-+...+|.+.|.+.|+.
T Consensus       812 eLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DR--iHL-r~Tyy~yA~~Lear~Di~~AleyyEK  883 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDR--IHL-RNTYYNYAKYLEARRDIEAALEYYEK  883 (1416)
T ss_pred             HHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccc--eeh-hhhHHHHHHHHHhhccHHHHHHHHHh
Confidence            67788888887776543     44455666677888888777665322  222 23444445555566777777776654

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.74  E-value=2.4e-07  Score=79.10  Aligned_cols=152  Identities=12%  Similarity=0.064  Sum_probs=72.0

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 038522          406 LIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG  485 (590)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  485 (590)
                      +-..+...|+-+....+....... ..-|......++....+.|++.+|...+.+...  .-++|...|+.+.-+|.+.|
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence            334444444444444444443321 111233333344445555555555555555543  23344555555555555555


Q ss_pred             ChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522          486 QLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTR  560 (590)
Q Consensus       486 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  560 (590)
                      +.++|..-|.+. .+.| ++...+.+...+.-.|+.+.|+.++..+....|.+..+-..|+.+...+|++++|..+.
T Consensus       149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            555555555444 2222 23334455555555555555555555555555545555555555555555555555443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.73  E-value=1.2e-06  Score=89.48  Aligned_cols=131  Identities=16%  Similarity=0.109  Sum_probs=91.3

Q ss_pred             CCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHH
Q 038522          432 VPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSA  508 (590)
Q Consensus       432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~  508 (590)
                      ..+...+..|.....+.|.+++|..+++.+.+   +.|+ ......++..+.+.+++++|+..+++. ...|+ ......
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~  159 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILL  159 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHH
Confidence            34566667777777777777777777777773   3565 445556667777777777777777776 44453 344556


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +..++.+.|++++|...|++++..+|+++.++..++.++...|+.++|...|++..+
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            666667777777777777777777777777777777777777777777777777655

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.71  E-value=2.3e-05  Score=75.77  Aligned_cols=152  Identities=11%  Similarity=-0.013  Sum_probs=69.7

Q ss_pred             HhhcccchhHHHHHHHHHHHhcCCCchhHHHH---HHHHHHhcCChHHHHHHhccCCCCCc---cchHHHHHHHHhcCCh
Q 038522           39 FCIDKKAERQAHLIHAHIITNGYESNLHLSTK---VIIFYAKVGDVLSARKAFDRMPERNV---VSWTAMISGYAQNGYD  112 (590)
Q Consensus        39 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~  112 (590)
                      .+...|++++|.+.++...+.. +.+...+..   ........+..+.+.+.++.....+.   .....+...+...|++
T Consensus        52 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~  130 (355)
T cd05804          52 SAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQY  130 (355)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCH
Confidence            3445566666666666666553 223333321   11111123344444444443222111   1222333455556666


Q ss_pred             HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCC-CCch--HHHHHHHHHHHhcCChHHHHHHH
Q 038522          113 ENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRF-VENL--FVKSALLDLYAKCGWIEDAWILF  189 (590)
Q Consensus       113 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~~~~~~~~~A~~~~  189 (590)
                      ++|.+.+++..+.. +.+...+..+...+...|++++|...++...+... .|+.  ..|..+...+...|++++|..++
T Consensus       131 ~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~  209 (355)
T cd05804         131 DRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIY  209 (355)
T ss_pred             HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            66666666665532 22233444444555555666666666555554321 1111  22334555555555555555555


Q ss_pred             hcc
Q 038522          190 ERI  192 (590)
Q Consensus       190 ~~~  192 (590)
                      ++.
T Consensus       210 ~~~  212 (355)
T cd05804         210 DTH  212 (355)
T ss_pred             HHH
Confidence            554

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.71  E-value=2e-06  Score=89.49  Aligned_cols=199  Identities=15%  Similarity=0.167  Sum_probs=143.0

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCCC--------CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGDK--------NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFL  439 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  439 (590)
                      +...|-..|......++.++|++++++....        -...|.+++......|.-+...++|+++.+.  .-....|.
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence            3455566677777778888888888776531        2236777777777777777778888887763  22344567


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC---HhHHHHHHHHHHh
Q 038522          440 SLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT---ASLWSAILGACSI  515 (590)
Q Consensus       440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~  515 (590)
                      .|...|.+.+.+++|.++++.|.++++  .....|..+++.+.+..+-++|..++.++ ..-|.   .....-.+..-.+
T Consensus      1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence            777788888888888888888888755  45667788888888888888888888776 33343   3334444455567


Q ss_pred             cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522          516 YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK  570 (590)
Q Consensus       516 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  570 (590)
                      .|+.+.+..+|+-.+.-.|.....|..++..-.++|+.+.++.+|+.+...++.+
T Consensus      1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred             cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence            7888888888888888888888888888888888888888888888877766543

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.67  E-value=4.6e-07  Score=73.69  Aligned_cols=123  Identities=11%  Similarity=0.051  Sum_probs=100.9

Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522          420 IELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-  497 (590)
Q Consensus       420 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  497 (590)
                      ..++++..+  +.|+.  +..+...+...|++++|...|+....   ..| +...+..+..++.+.|++++|...|++. 
T Consensus        13 ~~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al   85 (144)
T PRK15359         13 EDILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHAL   85 (144)
T ss_pred             HHHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            345666665  35553  44567778899999999999999985   344 5788889999999999999999999998 


Q ss_pred             CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          498 NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       498 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      ...| ++..+..+..++...|++++|+..++++++..|+++..+...+.+...
T Consensus        86 ~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~  138 (144)
T PRK15359         86 MLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIM  138 (144)
T ss_pred             hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            4445 677888999999999999999999999999999999999888776543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.62  E-value=0.00039  Score=76.54  Aligned_cols=259  Identities=8%  Similarity=-0.000  Sum_probs=146.8

Q ss_pred             HHHHhcCCchHHHHHHHHHHHcCCCCCh----hhHHHHHHHhccCCChhHHHHHHHHHHHhCC---CC--ChhHHHHHHH
Q 038522          205 GGLAMQGFNDDSFWLFRSMMRQGMKPDC----FTLGSILRASVGGIELMKISQIHDLIIKLGL---ES--SNKLTGSLID  275 (590)
Q Consensus       205 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~  275 (590)
                      ..+...|++++|...+++....-...+.    ...+.+...+...|+++.|...+.......-   .+  .......+..
T Consensus       460 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~  539 (903)
T PRK04841        460 QVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSE  539 (903)
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence            3445677777777777666542111111    2234444455667777777777766654211   11  1234445566


Q ss_pred             HHHhcCChHHHHHHHHhccC-------CC----ccchHHHHHHHHhcCCChHHHHHHHHHHHHcC--CCCC--HHHHHHH
Q 038522          276 VYAKYGSIRSAYQLYRSMLK-------TD----IISCTALISGFARDDNHSKEAFDLFKDMILKK--MGID--DVILCLM  340 (590)
Q Consensus       276 ~~~~~g~~~~a~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~--~~p~--~~~~~~l  340 (590)
                      .+...|+++.|...+++...       ++    ...+..+...+...|+ +++|...+.+.....  ..+.  ...+..+
T Consensus       540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  618 (903)
T PRK04841        540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR-LDEAEQCARKGLEVLSNYQPQQQLQCLAML  618 (903)
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC-HHHHHHHHHHhHHhhhccCchHHHHHHHHH
Confidence            67777777777777666521       01    1112233344555677 778877777665421  1121  2223334


Q ss_pred             HHHHhchhhhHhHHHHHHHHHHhCCCcc-hh-----HHHHHHHHHHhcCChHHHHHHHHhcCCCCcc-------hHHHHH
Q 038522          341 LNICANVASLNLGRQIHAFAFKYQSSYD-AA-----VGNALIDMYAKSGEIADANRAFDEMGDKNVI-------SWTSLI  407 (590)
Q Consensus       341 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~l~  407 (590)
                      .......|+.+.|...+........... ..     .....+..+...|+.+.|..++.....+...       .+..+.
T Consensus       619 a~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a  698 (903)
T PRK04841        619 AKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIA  698 (903)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHH
Confidence            4455667788888777776644211110 00     0011224445678888888888776643211       134566


Q ss_pred             HHHHhcCCchHHHHHHHHHHHc----CCCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhh
Q 038522          408 AGYAKHGYGHEAIELYKKMKHE----GMVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINK  464 (590)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  464 (590)
                      .++...|++++|...+++....    |..++ ..+...+..++...|+.++|...+.+..+.
T Consensus       699 ~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        699 RAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6778888999998888887653    22222 235556667778889999999988888764

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.60  E-value=1.8e-05  Score=73.92  Aligned_cols=136  Identities=15%  Similarity=0.101  Sum_probs=75.6

Q ss_pred             HHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCC
Q 038522          409 GYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQ  486 (590)
Q Consensus       409 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~  486 (590)
                      .+...|++++|+..++.+...  .| |+.......+.+.+.++.++|.+.++++...   .|+ ....-.+..+|.+.|+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~  389 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGK  389 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCC
Confidence            344455666666666665553  34 3333444445555666666666666666632   444 3334445556666666


Q ss_pred             hHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522          487 LESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME  564 (590)
Q Consensus       487 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (590)
                      +.+|..++++.  ..+.|+..|..|..+|...|+..++..                 ..+..|+-.|++++|+..+...+
T Consensus       390 ~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~-----------------A~AE~~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         390 PQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALL-----------------ARAEGYALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             hHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHH-----------------HHHHHHHhCCCHHHHHHHHHHHH
Confidence            66666666655  334455566666666666665544432                 23444555666666666666665


Q ss_pred             hc
Q 038522          565 ER  566 (590)
Q Consensus       565 ~~  566 (590)
                      ++
T Consensus       453 ~~  454 (484)
T COG4783         453 QQ  454 (484)
T ss_pred             Hh
Confidence            53

>PF12854 PPR_1: PPR repeat

Probab=98.60  E-value=7.7e-08  Score=55.24  Aligned_cols=33  Identities=24%  Similarity=0.536  Sum_probs=23.1

Q ss_pred             CCCCchHHHHHHHHHHHhcCChHHHHHHHhccC
Q 038522          161 RFVENLFVKSALLDLYAKCGWIEDAWILFERIE  193 (590)
Q Consensus       161 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  193 (590)
                      |+.||..+|+.||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            566777777777777777777777777776663

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.59  E-value=9.2e-07  Score=71.73  Aligned_cols=97  Identities=15%  Similarity=0.247  Sum_probs=71.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      ......+...+...|++++|.+.++.. ...| +...|..+...+...|+++.|...++++++.+|.++..+..++.+|.
T Consensus        17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~   96 (135)
T TIGR02552        17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL   96 (135)
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            344555666677777777777777776 3233 55667777777777788888888888888888877888888888888


Q ss_pred             hcCChHHHHHHHHHhhhcC
Q 038522          549 AAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       549 ~~g~~~~A~~~~~~~~~~~  567 (590)
                      ..|++++|.+.++...+..
T Consensus        97 ~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        97 ALGEPESALKALDLAIEIC  115 (135)
T ss_pred             HcCCHHHHHHHHHHHHHhc
Confidence            8888888888887776654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF12854 PPR_1: PPR repeat

Probab=98.57  E-value=7.8e-08  Score=55.21  Aligned_cols=33  Identities=33%  Similarity=0.393  Sum_probs=26.0

Q ss_pred             cCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 038522           60 GYESNLHLSTKVIIFYAKVGDVLSARKAFDRMP   92 (590)
Q Consensus        60 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~   92 (590)
                      |+.||..+|+.||.+|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            677888888888888888888888888887774

>PLN02789 farnesyltranstransferase

Probab=98.56  E-value=5.3e-05  Score=70.29  Aligned_cols=185  Identities=11%  Similarity=0.078  Sum_probs=128.8

Q ss_pred             HHHHHhcC-ChHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCc--hHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhcc
Q 038522          376 IDMYAKSG-EIADANRAFDEMGDK---NVISWTSLIAGYAKHGYG--HEAIELYKKMKHEGMVP-NDVTFLSLLFACSHT  448 (590)
Q Consensus       376 ~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~--~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~  448 (590)
                      ..++...| ++++++..++++.+.   +..+|+.....+.+.|+.  ++++.+++++.+.  .| |...|.....++...
T Consensus        78 ~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l  155 (320)
T PLN02789         78 RLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTL  155 (320)
T ss_pred             HHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHh
Confidence            33444445 567888888776642   334566554445555553  6778888888875  45 678888888888888


Q ss_pred             CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc---CCh----HHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc---
Q 038522          449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR---GQL----ESAYNMIRQM-NIKP-TASLWSAILGACSIY---  516 (590)
Q Consensus       449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---  516 (590)
                      |+++++++.++++.+. . .-+...|+....++.+.   |..    ++++++..++ ...| |...|+-+...+...   
T Consensus       156 ~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~  233 (320)
T PLN02789        156 GGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEA  233 (320)
T ss_pred             hhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcc
Confidence            9999999999999875 2 23455666655555443   222    4567777555 4445 567788888777663   


Q ss_pred             -CCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC------------------ChHHHHHHHHHhh
Q 038522          517 -GNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG------------------AWDNARKTRKLME  564 (590)
Q Consensus       517 -~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~~  564 (590)
                       ++..+|.....++.+.+|.++.++..|+.+|....                  ..++|.++++.+.
T Consensus       234 l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        234 LVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             cccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHH
Confidence             45577999999999999999999999999998643                  3467888888873

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.56  E-value=2.6e-06  Score=67.83  Aligned_cols=97  Identities=9%  Similarity=0.019  Sum_probs=85.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      ....-.+...+...|++++|..+|+-. ...| +...|-.|...|...|++++|+..|.++..++|++|.++..++.+|.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            344555666778999999999999988 5555 55678899999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhhhcC
Q 038522          549 AAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       549 ~~g~~~~A~~~~~~~~~~~  567 (590)
                      ..|+.+.|++.|+......
T Consensus       115 ~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HcCCHHHHHHHHHHHHHHh
Confidence            9999999999999887744

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.54  E-value=4.9e-06  Score=74.94  Aligned_cols=183  Identities=16%  Similarity=0.042  Sum_probs=127.6

Q ss_pred             CCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC-c-chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC-cc---h
Q 038522          331 GIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSS-Y-DAAVGNALIDMYAKSGEIADANRAFDEMGD--KN-VI---S  402 (590)
Q Consensus       331 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~~---~  402 (590)
                      ......+......+...|+++.|...++.+....+. | ....+..+..++.+.|++++|...++++.+  |+ ..   +
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            334566777788889999999999999999886543 2 234667788999999999999999999874  32 22   3


Q ss_pred             HHHHHHHHHhc--------CCchHHHHHHHHHHHcCCCCcHH-HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhH
Q 038522          403 WTSLIAGYAKH--------GYGHEAIELYKKMKHEGMVPNDV-TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEH  473 (590)
Q Consensus       403 ~~~l~~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  473 (590)
                      +..+..++...        |++++|.+.++++.+.  .|+.. .+..+.....    .      .....         ..
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~  168 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GK  168 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HH
Confidence            55555666554        6789999999999875  56432 3222211100    0      00000         01


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhc-CCCC----CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          474 FSCVVDLFARRGQLESAYNMIRQM-NIKP----TASLWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      ...+...|.+.|++++|+..+++. ...|    ....+..+..++...|++++|...++.+....|
T Consensus       169 ~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       169 ELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            124566788899999999998887 2222    346788888899999999999998888877666

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.54  E-value=2.7e-06  Score=80.24  Aligned_cols=123  Identities=15%  Similarity=0.102  Sum_probs=103.6

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHH
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACS  514 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~  514 (590)
                      ....++..+...++++.|..+++++.+.   .|+  ....+++.+...++-.+|.+++.+.  ..+.+...+......+.
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl  245 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL  245 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            3445666777788999999999999965   355  3445788888889999999999888  33346666676777788


Q ss_pred             hcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522          515 IYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME  564 (590)
Q Consensus       515 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (590)
                      ..++++.|+.+.+++.+..|.+-.+|..|+.+|...|++++|+-.++.+.
T Consensus       246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            99999999999999999999999999999999999999999999999875

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.54  E-value=1.3e-05  Score=69.08  Aligned_cols=155  Identities=8%  Similarity=0.075  Sum_probs=118.4

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHH
Q 038522          375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEG  454 (590)
Q Consensus       375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  454 (590)
                      -+..|...|+++.+....+.+..|. .       .+...++.+++...+++..+.. +.|...|..+...|...|++++|
T Consensus        22 ~~~~Y~~~g~~~~v~~~~~~~~~~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A   92 (198)
T PRK10370         22 CVGSYLLSPKWQAVRAEYQRLADPL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNA   92 (198)
T ss_pred             HHHHHHHcchHHHHHHHHHHHhCcc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            3456788888888766654443321 1       1112566788888888877752 44788899999999999999999


Q ss_pred             HHHHHHHHhhcCCCC-ChhHHHHHHHHH-HhcCC--hHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHH
Q 038522          455 WELFTDMINKYRILP-RAEHFSCVVDLF-ARRGQ--LESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARN  528 (590)
Q Consensus       455 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~  528 (590)
                      ...|++..+.   .| +...+..+..++ ...|+  .++|.+++++. ...| +...+..+...+...|++++|+..|++
T Consensus        93 ~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~  169 (198)
T PRK10370         93 LLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK  169 (198)
T ss_pred             HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999854   45 577788888864 67777  59999999998 5555 567788888999999999999999999


Q ss_pred             HhcCCCCCcchHH
Q 038522          529 LFDMEPEKSVNYV  541 (590)
Q Consensus       529 ~~~~~p~~~~~~~  541 (590)
                      +++..|.+..-+.
T Consensus       170 aL~l~~~~~~r~~  182 (198)
T PRK10370        170 VLDLNSPRVNRTQ  182 (198)
T ss_pred             HHhhCCCCccHHH
Confidence            9999986654443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.52  E-value=6.8e-06  Score=80.21  Aligned_cols=211  Identities=10%  Similarity=0.014  Sum_probs=168.4

Q ss_pred             HHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCcchHHHHHHHHHhcCC
Q 038522          338 CLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG--DKNVISWTSLIAGYAKHGY  415 (590)
Q Consensus       338 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~  415 (590)
                      ..+...+.+.|-...|..+++..         ..+..++.+|...|+..+|..+..+..  +|++..|..+.+......-
T Consensus       402 ~~laell~slGitksAl~I~Erl---------emw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~  472 (777)
T KOG1128|consen  402 RLLAELLLSLGITKSALVIFERL---------EMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL  472 (777)
T ss_pred             HHHHHHHHHcchHHHHHHHHHhH---------HHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence            34556667778888888888754         455678889999999999998877655  4778888888888777777


Q ss_pred             chHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 038522          416 GHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIR  495 (590)
Q Consensus       416 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  495 (590)
                      +++|.++.+.....       .-..+.....+.++++++.+.|+.-.+-  .+.-..+|-.+.-+..+.++++.|.+.|.
T Consensus       473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence            88888888765432       1112222234578999999999887753  12346788888888899999999999999


Q ss_pred             hc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          496 QM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       496 ~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      .. ...|| ...|+.+..+|.+.++-.+|...++++++-+-++..+|.+...+....|.|++|.+.++.+.+.
T Consensus       544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            88 55664 5789999999999999999999999999988888999999999999999999999999998773

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.52  E-value=3.1e-05  Score=80.17  Aligned_cols=148  Identities=11%  Similarity=0.091  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522          371 VGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH  447 (590)
Q Consensus       371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  447 (590)
                      .+..+..+|-+.|+.++|..+|+++.+   .|+...|.+...|... +.++|.+++.+....               +..
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~  181 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FIK  181 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HHh
Confidence            445555666666666666666666553   2444555555555555 666666666655542               344


Q ss_pred             cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHH
Q 038522          448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAAR  527 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~  527 (590)
                      .+.+..+.++|.++...  .+-+...+..+.+.....-            +..--..++.-+..-|...++++++..+++
T Consensus       182 ~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~~------------~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK  247 (906)
T PRK14720        182 KKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGHR------------EFTRLVGLLEDLYEPYKALEDWDEVIYILK  247 (906)
T ss_pred             hhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhhh------------ccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            44556666666666542  1112223222222221111            111222344445556667778888888888


Q ss_pred             HHhcCCCCCcchHHHHHHHHH
Q 038522          528 NLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       528 ~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      .+++.+|.|..+...++.+|.
T Consensus       248 ~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        248 KILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHhcCCcchhhHHHHHHHHH
Confidence            888888888888888888777

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.49  E-value=0.00013  Score=62.77  Aligned_cols=155  Identities=16%  Similarity=0.135  Sum_probs=77.7

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc----cCC
Q 038522          375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH----TGL  450 (590)
Q Consensus       375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~  450 (590)
                      -...|+..|++++|.+......  +....-.=+..+.+..+.+-|.+.+++|.+   -.+..|.+-|..++.+    .+.
T Consensus       114 aa~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~---ided~tLtQLA~awv~la~ggek  188 (299)
T KOG3081|consen  114 AAIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ---IDEDATLTQLAQAWVKLATGGEK  188 (299)
T ss_pred             hhHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cchHHHHHHHHHHHHHHhccchh
Confidence            3445566666666666665522  222222223334455556666666666664   2344455544444432    234


Q ss_pred             hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCc-hHHHHHHH
Q 038522          451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNT-SLGELAAR  527 (590)
Q Consensus       451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~-~~a~~~~~  527 (590)
                      +.+|.-+|++|.++  .+|+..+.+....++...|++++|..++++.  ....++.+...++-.....|.. +...+.+.
T Consensus       189 ~qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~  266 (299)
T KOG3081|consen  189 IQDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS  266 (299)
T ss_pred             hhhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence            55566666666542  3555555555555556666666666666555  2233444444444333344433 33444555


Q ss_pred             HHhcCCCCC
Q 038522          528 NLFDMEPEK  536 (590)
Q Consensus       528 ~~~~~~p~~  536 (590)
                      ++....|.+
T Consensus       267 QLk~~~p~h  275 (299)
T KOG3081|consen  267 QLKLSHPEH  275 (299)
T ss_pred             HHHhcCCcc
Confidence            555555533

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.49  E-value=2.8e-05  Score=66.72  Aligned_cols=152  Identities=13%  Similarity=0.054  Sum_probs=83.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC
Q 038522          373 NALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG  449 (590)
Q Consensus       373 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  449 (590)
                      ..+-..+...|+-+....+......   .+.......+....+.|++..|...+++.... -++|...|+.+.-+|.+.|
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~G  148 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLG  148 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHcc
Confidence            3344444455555555555554331   23334444566666666666666666666553 2445666666666666666


Q ss_pred             ChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHH
Q 038522          450 LTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAA  526 (590)
Q Consensus       450 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~  526 (590)
                      +.+.|..-|.+..+-   .| +...++.+.-.|.-.|+.+.|..++... -.++ |...-..+..+....|+++.|+.+.
T Consensus       149 r~~~Ar~ay~qAl~L---~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         149 RFDEARRAYRQALEL---APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             ChhHHHHHHHHHHHh---ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            666666666666543   22 2445555666666666666666666665 1122 4444455555555666666666554


Q ss_pred             HH
Q 038522          527 RN  528 (590)
Q Consensus       527 ~~  528 (590)
                      .+
T Consensus       226 ~~  227 (257)
T COG5010         226 VQ  227 (257)
T ss_pred             cc
Confidence            43

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.48  E-value=5.2e-05  Score=79.47  Aligned_cols=227  Identities=13%  Similarity=0.128  Sum_probs=170.3

Q ss_pred             CHHHHHHHHHHHhchhhhHhHHHHHHHHHHh-CCCc---chhHHHHHHHHHHhcCChHHHHHHHHhcCCC-C-cchHHHH
Q 038522          333 DDVILCLMLNICANVASLNLGRQIHAFAFKY-QSSY---DAAVGNALIDMYAKSGEIADANRAFDEMGDK-N-VISWTSL  406 (590)
Q Consensus       333 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~l  406 (590)
                      ++..|...|.-....++.+.|+.+.+++... ++.-   -..+|.++++.-..-|.-+...++|+++.+- | ...|..|
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence            4456777777788888888888888877653 2221   1345666666666678888889999998863 3 3578889


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ  486 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  486 (590)
                      ...|.+.+.+++|-++++.|.+. +.-....|...+..+.+..+-+.|..++.+..+...-.-........+..-.+.|+
T Consensus      1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred             HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence            99999999999999999999986 55667888899999999999999999999998752112235566667777789999


Q ss_pred             hHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC--CCCcchHHH-HHHHHHhcCChHHHHHHH
Q 038522          487 LESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDME--PEKSVNYVV-LSNIYTAAGAWDNARKTR  560 (590)
Q Consensus       487 ~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~-l~~~~~~~g~~~~A~~~~  560 (590)
                      .+++..+|+..  ..+-....|+.++..-.++|+.+.++.+|++++.+.  |.....++- +...-...|+-+.+..+=
T Consensus      1616 aeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred             chhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence            99999999988  434466789999999999999999999999999654  555554443 343333446655544443

>PLN02789 farnesyltranstransferase

Probab=98.47  E-value=1.7e-05  Score=73.60  Aligned_cols=191  Identities=10%  Similarity=0.053  Sum_probs=139.9

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcC-CchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccC
Q 038522          375 LIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHG-YGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTG  449 (590)
Q Consensus       375 l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~  449 (590)
                      +-..+...++.++|+...+++.+.++   .+|+.....+...| ++++++..++++.+.  .| +..+|......+.+.|
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~  120 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLG  120 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcC
Confidence            33445556788899999888875333   45655556666667 579999999999985  44 5556666555555666


Q ss_pred             Ch--HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc---CCc---
Q 038522          450 LT--CEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIY---GNT---  519 (590)
Q Consensus       450 ~~--~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~---  519 (590)
                      ..  +++..+++.+.+.  -+-+...|.....++...|+++++++.+.++ ...| |...|+.........   |..   
T Consensus       121 ~~~~~~el~~~~kal~~--dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~  198 (320)
T PLN02789        121 PDAANKELEFTRKILSL--DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAM  198 (320)
T ss_pred             chhhHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhcccccccccc
Confidence            53  6788899888854  2335788888888889999999999999998 4334 567777766665443   223   


Q ss_pred             -hHHHHHHHHHhcCCCCCcchHHHHHHHHHhc----CChHHHHHHHHHhhhcCCc
Q 038522          520 -SLGELAARNLFDMEPEKSVNYVVLSNIYTAA----GAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       520 -~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~  569 (590)
                       +..+....+++..+|+|..+|..+..++...    ++..+|.+...+..+.+++
T Consensus       199 ~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~  253 (320)
T PLN02789        199 RDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSN  253 (320)
T ss_pred             HHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCC
Confidence             4688888899999999999999999999883    4567788888876665443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.46  E-value=3.1e-05  Score=65.83  Aligned_cols=191  Identities=14%  Similarity=0.150  Sum_probs=86.8

Q ss_pred             hhhHhHHHHHHHHHH---hC-CCcch-hHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHH---HHHHHHhcCCchHH
Q 038522          348 ASLNLGRQIHAFAFK---YQ-SSYDA-AVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTS---LIAGYAKHGYGHEA  419 (590)
Q Consensus       348 ~~~~~a~~~~~~~~~---~~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~a  419 (590)
                      .+.++..+++..+..   .| ..++. .+|..++-+....|+.+.|...++.+.+.-+.++..   -..-+-..|++++|
T Consensus        26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A  105 (289)
T KOG3060|consen   26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEA  105 (289)
T ss_pred             cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhH
Confidence            344555555555433   12 22222 223344444445555555555555544211111111   01122334555555


Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-C
Q 038522          420 IELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-N  498 (590)
Q Consensus       420 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~  498 (590)
                      +++++...+.. +-|..++..=+...-..|..-+|++-+....+.  +..|...|..+.+.|...|++++|.--++++ -
T Consensus       106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll  182 (289)
T KOG3060|consen  106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLL  182 (289)
T ss_pred             HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Confidence            55555555542 224444444444444445555555555555542  3445555555555555555555555555555 2


Q ss_pred             CCC-CHhHHHHHHHHHHhcC---CchHHHHHHHHHhcCCCCCcchHH
Q 038522          499 IKP-TASLWSAILGACSIYG---NTSLGELAARNLFDMEPEKSVNYV  541 (590)
Q Consensus       499 ~~p-~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~~~~~~  541 (590)
                      +.| ++..+..+...+.-.|   +.+.+.+.|.+++++.|.+...+.
T Consensus       183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~  229 (289)
T KOG3060|consen  183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALF  229 (289)
T ss_pred             cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHH
Confidence            223 3333344443333222   444555555555555554433333

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=5.4e-05  Score=72.17  Aligned_cols=83  Identities=13%  Similarity=0.129  Sum_probs=45.6

Q ss_pred             ccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCC---CccchHHHHHHHHhcCCChHHHH
Q 038522          243 VGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKT---DIISCTALISGFARDDNHSKEAF  319 (590)
Q Consensus       243 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~a~  319 (590)
                      .+.|++..|.-.|+..++.+ |-+...|..|.......++-..|+..+++..+-   |......|...|...+. -..|+
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~-q~~Al  373 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGL-QNQAL  373 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh-HHHHH
Confidence            35555666666666665554 444556666666666666666666666655332   22344444455555555 55566


Q ss_pred             HHHHHHHH
Q 038522          320 DLFKDMIL  327 (590)
Q Consensus       320 ~~~~~~~~  327 (590)
                      ..|+..+.
T Consensus       374 ~~L~~Wi~  381 (579)
T KOG1125|consen  374 KMLDKWIR  381 (579)
T ss_pred             HHHHHHHH
Confidence            66655543

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.41  E-value=7.1e-05  Score=70.10  Aligned_cols=120  Identities=14%  Similarity=0.116  Sum_probs=80.8

Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchH
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSL  521 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~  521 (590)
                      .+...|.+++|+..++.+...  .+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|++.+
T Consensus       315 ~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         315 QTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence            344556777777777777653  2334555556666777777777777777776 55555 4455666677777777777


Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          522 GELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       522 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      |+.+++.....+|+++..|..|+.+|..+|+..+|....-+...
T Consensus       393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~  436 (484)
T COG4783         393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYA  436 (484)
T ss_pred             HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            77777777777777777777777777777777777766665544

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.39  E-value=0.0036  Score=63.37  Aligned_cols=217  Identities=11%  Similarity=0.055  Sum_probs=137.0

Q ss_pred             cccCChHHHHHHhhhCCCCCCCcccHHHHHH--HhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHH
Q 038522            8 FKTGQLKQALKFSLSCPDTLLDPSTYMSLLQ--FCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSAR   85 (590)
Q Consensus         8 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~   85 (590)
                      ...+++.+|+....++..-.|+.. |..++.  .+.+.|..++|..+++.....+.. |..|...+-.+|...++.++|.
T Consensus        20 ld~~qfkkal~~~~kllkk~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKHPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHH
Confidence            356788899988888833344443 333444  456889999999999888766533 8888999999999999999999


Q ss_pred             HHhccCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC----------chhhHHHH
Q 038522           86 KAFDRMPE--RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMR----------WLQGGRMI  153 (590)
Q Consensus        86 ~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------~~~~a~~~  153 (590)
                      .++++...  |+..-...+..+|.|.+++.+-.+.--+|-+. ++-+...|=+++....+..          -..-|...
T Consensus        98 ~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m  176 (932)
T KOG2053|consen   98 HLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKM  176 (932)
T ss_pred             HHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHH
Confidence            99999877  66555555666778877776544443333332 3334444444444433221          12334555


Q ss_pred             HHHHHhcC-CCCchHHHHHHHHHHHhcCChHHHHHHHhc-cC----CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcC
Q 038522          154 QGSIQKGR-FVENLFVKSALLDLYAKCGWIEDAWILFER-IE----RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQG  227 (590)
Q Consensus       154 ~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  227 (590)
                      .+.+.+.+ .--+..-...-...+...|++++|++++.. ..    .-+...-+.-+..+...+++.+..++-.++...|
T Consensus       177 ~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  177 VQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG  256 (932)
T ss_pred             HHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence            56665543 111222222334455677889999988832 22    2233334455677778888888888888888775

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.37  E-value=0.0026  Score=60.62  Aligned_cols=76  Identities=13%  Similarity=0.099  Sum_probs=56.8

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHhccCCC--C-CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038522           62 ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE--R-NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSAL  138 (590)
Q Consensus        62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  138 (590)
                      +.|..+|..||.-+..+ .++++.+.++++..  | ....|..-|..-.+..+++....+|.+-+..-.  +...|..-|
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW~lYl   93 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLWKLYL   93 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHHHHHH
Confidence            66888899888876655 88888888888876  3 455788888888888899999888888876543  455555444


Q ss_pred             HH
Q 038522          139 RA  140 (590)
Q Consensus       139 ~~  140 (590)
                      .-
T Consensus        94 ~Y   95 (656)
T KOG1914|consen   94 SY   95 (656)
T ss_pred             HH
Confidence            43

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=0.00015  Score=62.31  Aligned_cols=167  Identities=12%  Similarity=0.115  Sum_probs=113.8

Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC-Cc
Q 038522          322 FKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK-NV  400 (590)
Q Consensus       322 ~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~  400 (590)
                      .+.+.......+......-...|...++.+.|.+..+...      +......=+..+.+..+++-|.+.++.|.+- +-
T Consensus        96 ~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided  169 (299)
T KOG3081|consen   96 YELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDED  169 (299)
T ss_pred             HHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchH
Confidence            3334433333443444444556777778888777765521      2222233345567778899999999999874 44


Q ss_pred             chHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHH
Q 038522          401 ISWTSLIAGYAK----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSC  476 (590)
Q Consensus       401 ~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  476 (590)
                      .+.+.|..++.+    .+...+|.-+|++|.++ ..|++.+.+....++...|++++|..+++....+.  ..++.+...
T Consensus       170 ~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd--~~dpetL~N  246 (299)
T KOG3081|consen  170 ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD--AKDPETLAN  246 (299)
T ss_pred             HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc--CCCHHHHHH
Confidence            566666666654    34688999999999875 68999999999999999999999999999999762  335666666


Q ss_pred             HHHHHHhcCChHHH-HHHHHhc
Q 038522          477 VVDLFARRGQLESA-YNMIRQM  497 (590)
Q Consensus       477 l~~~~~~~g~~~~A-~~~~~~~  497 (590)
                      ++-.-...|...++ .+.+...
T Consensus       247 liv~a~~~Gkd~~~~~r~l~QL  268 (299)
T KOG3081|consen  247 LIVLALHLGKDAEVTERNLSQL  268 (299)
T ss_pred             HHHHHHHhCCChHHHHHHHHHH
Confidence            66666666766554 4444554

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.34  E-value=0.0031  Score=60.12  Aligned_cols=450  Identities=12%  Similarity=0.124  Sum_probs=241.9

Q ss_pred             CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCccchHH
Q 038522           24 PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE--RNVVSWTA  101 (590)
Q Consensus        24 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~  101 (590)
                      ...|.|..+|+.|++-+..+ -.+++...++++... ++.++..|..-|..-.+..+++..+++|.+-..  -+...|..
T Consensus        14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvLnlDLW~l   91 (656)
T KOG1914|consen   14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVLNLDLWKL   91 (656)
T ss_pred             hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhHhHHHH
Confidence            56788999999999988776 899999999999876 567888999999999999999999999988443  56777777


Q ss_pred             HHHHHHhc-CChHH----HHHHHHHHH-HcCCCCCH-hhHHHHHHH---------HhccCchhhHHHHHHHHHhcCCCCc
Q 038522          102 MISGYAQN-GYDEN----ALLVFSAML-RSGVRANQ-FTYSSALRA---------CARMRWLQGGRMIQGSIQKGRFVEN  165 (590)
Q Consensus       102 li~~~~~~-~~~~~----a~~~~~~m~-~~~~~p~~-~~~~~ll~~---------~~~~~~~~~a~~~~~~~~~~~~~~~  165 (590)
                      -|+.-.+. |+...    ..+.|+-.. +-|+.+-. ..|+.-+.-         +....+++..+.+++.+....+.  
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~--  169 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMH--  169 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccc--
Confidence            76644332 33322    222333322 22332221 122222221         11222333444444444332111  


Q ss_pred             hHHHHHHHHHHHhcCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHH--cCCCCChhh--------
Q 038522          166 LFVKSALLDLYAKCGWIEDAWILFERIER-KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR--QGMKPDCFT--------  234 (590)
Q Consensus       166 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~--------  234 (590)
                                     ++++-++=|....+ -|..+-.-++  --+...+..|.++++++..  .|+.-+..+        
T Consensus       170 ---------------nlEkLW~DY~~fE~~IN~~tarK~i--~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~  232 (656)
T KOG1914|consen  170 ---------------NLEKLWKDYEAFEQEINIITARKFI--GERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKD  232 (656)
T ss_pred             ---------------cHHHHHHHHHHHHHHHHHHHHHHHH--HhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChH
Confidence                           11111111111000 0000000000  0112223344444444321  121111111        


Q ss_pred             -------HHHHHHHhccCCCh---------hHHHHHHHHH-HHhCCCCChhHHH-----HHHHHHHhcCCh-------HH
Q 038522          235 -------LGSILRASVGGIEL---------MKISQIHDLI-IKLGLESSNKLTG-----SLIDVYAKYGSI-------RS  285 (590)
Q Consensus       235 -------~~~ll~~~~~~~~~---------~~a~~~~~~~-~~~~~~~~~~~~~-----~l~~~~~~~g~~-------~~  285 (590)
                             +..+|.- .+.+-+         ....-++++. .-.+..|+.....     ...+.+...|+.       ++
T Consensus       233 e~~qv~~W~n~I~w-EksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e  311 (656)
T KOG1914|consen  233 EIQQVELWKNWIKW-EKSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDE  311 (656)
T ss_pred             HHHHHHHHHHHHHH-HhcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHH
Confidence                   1111110 010000         0011111111 1123333222110     111223333433       33


Q ss_pred             HHHHHHhccCC----CccchHHHHHH---HHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHH
Q 038522          286 AYQLYRSMLKT----DIISCTALISG---FARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHA  358 (590)
Q Consensus       286 a~~~~~~~~~~----~~~~~~~l~~~---~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  358 (590)
                      +..+++.....    +...|..+...   -....+ .+.....+.++...-..--..+|...+....+..-+..|+.+|.
T Consensus       312 ~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~-~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~  390 (656)
T KOG1914|consen  312 AASIYERAIEGLLKENKLLYFALADYEESRYDDNK-EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFK  390 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccch-hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHH
Confidence            33344333221    11112111110   011112 45555666666554333334567778888888888899999999


Q ss_pred             HHHHhCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCcc-hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc
Q 038522          359 FAFKYQSSY-DAAVGNALIDMYAKSGEIADANRAFDEMGD--KNVI-SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN  434 (590)
Q Consensus       359 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~  434 (590)
                      .+.+.+..+ ++.+++++++.||. ++..-|.++|+.-.+  +|.. --...+.-+...++-..+..+|++....++.|+
T Consensus       391 kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~  469 (656)
T KOG1914|consen  391 KAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSAD  469 (656)
T ss_pred             HHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChh
Confidence            998877766 78888888887765 788889999987553  3443 345567777788888899999999988877764


Q ss_pred             --HHHHHHHHHHhhccCChHHHHHHHHHHHhhcC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          435 --DVTFLSLLFACSHTGLTCEGWELFTDMINKYR--ILPRAEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       435 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                        ...|..++.--+.-|+...+.++-+++...+.  ..+....-..+++.|.-.+.+..-..-++.+
T Consensus       470 ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk~l  536 (656)
T KOG1914|consen  470 KSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGILDLYPCSLDELKFL  536 (656)
T ss_pred             hhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhcccccccHHHHHhh
Confidence              46899999888899999999988888876543  3333344555667776666665554444444

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.31  E-value=2.8e-05  Score=63.63  Aligned_cols=124  Identities=16%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHh----HHHHHHH
Q 038522          438 FLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTAS----LWSAILG  511 (590)
Q Consensus       438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~  511 (590)
                      |..++..+ ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...|++.    ....+..
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~   93 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLAR   93 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence            33344333 36677777777777776532211 1223334556677778888888888777 2224332    3344556


Q ss_pred             HHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522          512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLM  563 (590)
Q Consensus       512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (590)
                      .+...|++++|+..++.. ...|..+..+..++.+|...|++++|+..|+..
T Consensus        94 ~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   94 ILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            677788888888888663 333345667778888888888888888888754

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.30  E-value=2.2e-05  Score=63.57  Aligned_cols=115  Identities=10%  Similarity=0.018  Sum_probs=88.6

Q ss_pred             HHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC
Q 038522          422 LYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI  499 (590)
Q Consensus       422 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  499 (590)
                      .+++..+  ..| +......+...+...|++++|...++.+...  .+.+...+..+...+...|++++|...+++. ..
T Consensus         5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~   80 (135)
T TIGR02552         5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL   80 (135)
T ss_pred             hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4555554  355 3344566677788889999999999998864  2335778888888999999999999999887 33


Q ss_pred             CC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522          500 KP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY  540 (590)
Q Consensus       500 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  540 (590)
                      .| +...+..+...+...|+++.|...++++++++|++....
T Consensus        81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  122 (135)
T TIGR02552        81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEYS  122 (135)
T ss_pred             CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHH
Confidence            44 567777888888999999999999999999999665543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.25  E-value=1.3e-05  Score=63.18  Aligned_cols=95  Identities=14%  Similarity=0.079  Sum_probs=56.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHH
Q 038522          474 FSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSN  545 (590)
Q Consensus       474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~  545 (590)
                      +..++..+.+.|++++|.+.|+.+ ...|+    ...+..+..++...|+++.|...++.+....|++   +.++..++.
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            344455556666666666666655 22222    2344455566666666677777777666666543   345666666


Q ss_pred             HHHhcCChHHHHHHHHHhhhcCC
Q 038522          546 IYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       546 ~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ++.+.|++++|.+.++++.+..+
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHHCc
Confidence            66677777777777766666543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.24  E-value=1.5e-06  Score=63.36  Aligned_cols=78  Identities=13%  Similarity=0.211  Sum_probs=58.1

Q ss_pred             cCChHHHHHHHHhc-CCCC---CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 038522          484 RGQLESAYNMIRQM-NIKP---TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKT  559 (590)
Q Consensus       484 ~g~~~~A~~~~~~~-~~~p---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  559 (590)
                      .|++++|+.+++++ ...|   +...+..+...+.+.|++++|..++++ .+.+|.++.....++.+|...|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46777777777777 2233   445556677888888888888888888 777776777777888999999999999988


Q ss_pred             HHH
Q 038522          560 RKL  562 (590)
Q Consensus       560 ~~~  562 (590)
                      +++
T Consensus        81 l~~   83 (84)
T PF12895_consen   81 LEK   83 (84)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            875

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=0.00057  Score=58.46  Aligned_cols=182  Identities=13%  Similarity=0.143  Sum_probs=130.4

Q ss_pred             hHHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHH
Q 038522          315 SKEAFDLFKDMIL---KK-MGIDDVI-LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADAN  389 (590)
Q Consensus       315 ~~~a~~~~~~~~~---~~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  389 (590)
                      +++.++++.++..   .| ..|+..+ |..+.-+....+..+.|...++.+...- +-+..+-..-...+-..|++++|+
T Consensus        28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~~A~  106 (289)
T KOG3060|consen   28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYKEAI  106 (289)
T ss_pred             HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchhhHH
Confidence            8888888888764   24 5566544 4566677778888888888888887765 334444444444456678899999


Q ss_pred             HHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcC
Q 038522          390 RAFDEMGDK---NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYR  466 (590)
Q Consensus       390 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  466 (590)
                      ++++.+.+.   |.+++-.-+-..-..|+.-+|++-+.+..+. +..|...|.-+...|...|++++|.--++++.   -
T Consensus       107 e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l---l  182 (289)
T KOG3060|consen  107 EYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL---L  182 (289)
T ss_pred             HHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH---H
Confidence            999988854   3345555555666678888888888888775 67788899999999999999999988888888   3


Q ss_pred             CCC-ChhHHHHHHHHHHhcC---ChHHHHHHHHhc-CCCC
Q 038522          467 ILP-RAEHFSCVVDLFARRG---QLESAYNMIRQM-NIKP  501 (590)
Q Consensus       467 ~~~-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p  501 (590)
                      +.| ++..+..+.+.+.-.|   +.+-|.++|.+. .+.|
T Consensus       183 ~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~  222 (289)
T KOG3060|consen  183 IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP  222 (289)
T ss_pred             cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence            455 4556667777665444   566678888776 5455

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.22  E-value=1.4e-05  Score=60.08  Aligned_cols=94  Identities=15%  Similarity=0.260  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522          474 FSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG  551 (590)
Q Consensus       474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  551 (590)
                      +..+...+...|++++|...+++. ...| +...+..+...+...|++++|.+.++++.+..|.++..+..++.++...|
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence            455667778889999999998887 4344 34667777888888899999999999999999988888999999999999


Q ss_pred             ChHHHHHHHHHhhhcC
Q 038522          552 AWDNARKTRKLMEERS  567 (590)
Q Consensus       552 ~~~~A~~~~~~~~~~~  567 (590)
                      ++++|...++...+..
T Consensus        83 ~~~~a~~~~~~~~~~~   98 (100)
T cd00189          83 KYEEALEAYEKALELD   98 (100)
T ss_pred             hHHHHHHHHHHHHccC
Confidence            9999999998876543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.22  E-value=3.7e-06  Score=57.77  Aligned_cols=60  Identities=17%  Similarity=0.162  Sum_probs=53.5

Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +...+...|++++|+..++++++..|+++.++..++.++...|++++|..+++++.+..+
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P   62 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP   62 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            456778999999999999999999999999999999999999999999999999887654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.22  E-value=2.6e-06  Score=59.37  Aligned_cols=66  Identities=14%  Similarity=0.172  Sum_probs=60.6

Q ss_pred             CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC-ChHHHHHHHHHhhhcC
Q 038522          502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG-AWDNARKTRKLMEERS  567 (590)
Q Consensus       502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~  567 (590)
                      ++.+|..+...+...|++++|+..|+++++.+|+++.++..++.+|...| ++++|++.+++..+..
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            46678889999999999999999999999999999999999999999999 7999999999887643

...

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.20  E-value=0.00035  Score=71.90  Aligned_cols=139  Identities=9%  Similarity=0.057  Sum_probs=103.7

Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHH
Q 038522          399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSC  476 (590)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~  476 (590)
                      ++..+-.|.....+.|++++|..+|+...+.  .|+ ......+...+.+.+++++|...+++....   .|+ ......
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~~  159 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREILL  159 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHHH
Confidence            4667777778888888888888888888874  675 445666777788888888888888888853   454 566677


Q ss_pred             HHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522          477 VVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV  542 (590)
Q Consensus       477 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  542 (590)
                      +..++...|++++|..+|+++ ...| +..++..+..++...|+.++|...|+++++...+....|..
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~  227 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR  227 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence            777888888888888888887 2233 46777788888888888888888888888766544444443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.19  E-value=0.011  Score=60.22  Aligned_cols=504  Identities=12%  Similarity=0.024  Sum_probs=269.8

Q ss_pred             hcccchhHHHHHHHHHHHhcCCCchhHHHHHHHH--HHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHH
Q 038522           41 IDKKAERQAHLIHAHIITNGYESNLHLSTKVIIF--YAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENA  115 (590)
Q Consensus        41 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a  115 (590)
                      ...+++..|.+-...+.+..  |+. .|...+.+  ..+.|+.++|..+++....   .|..|...+-.+|.+.++.++|
T Consensus        20 ld~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence            35578888988888887764  332 23333333  5678999999999888754   4777899999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC----------hHHH
Q 038522          116 LLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGW----------IEDA  185 (590)
Q Consensus       116 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A  185 (590)
                      ..+|++...  .-|+......+..++.+.+++.+-.+.--++.+. ++-+.+.+=++++.+...-.          ..-|
T Consensus        97 ~~~Ye~~~~--~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA  173 (932)
T KOG2053|consen   97 VHLYERANQ--KYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA  173 (932)
T ss_pred             HHHHHHHHh--hCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence            999999987  4588888889999999998887776666666553 44555555556665554321          1234


Q ss_pred             HHHHhccCCCC--c---chHHHHHHHHHhcCCchHHHHHH-HHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHH
Q 038522          186 WILFERIERKD--V---VSWNAMIGGLAMQGFNDDSFWLF-RSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLII  259 (590)
Q Consensus       186 ~~~~~~~~~~~--~---~~~~~li~~~~~~~~~~~a~~~~-~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  259 (590)
                      .+.++.+.+.+  .   .-...-...+...|.+++|++++ ....+.-...+...-+.-+..+...+++.+..++-.++.
T Consensus       174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL  253 (932)
T ss_pred             HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            44555544332  1   11222234556688899999998 344443333344455566777788888888888888888


Q ss_pred             HhCCCCChhHHHHHHHHH----------------HhcCChHHHHHHHHhccCC-CccchHHHHHHHH---hcCCChHHHH
Q 038522          260 KLGLESSNKLTGSLIDVY----------------AKYGSIRSAYQLYRSMLKT-DIISCTALISGFA---RDDNHSKEAF  319 (590)
Q Consensus       260 ~~~~~~~~~~~~~l~~~~----------------~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~---~~~~~~~~a~  319 (590)
                      ..|...    |...++.+                ...+..+...+..++.... ...+|-+-+....   .-|+ .+++.
T Consensus       254 ~k~~Dd----y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~~Rgp~LA~lel~kr~~~~gd-~ee~~  328 (932)
T KOG2053|consen  254 EKGNDD----YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSKSRGPYLARLELDKRYKLIGD-SEEML  328 (932)
T ss_pred             HhCCcc----hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhcccccCcHHHHHHHHHHhcccCC-hHHHH
Confidence            876332    32222221                1122333333333333222 2223333333332   2344 44443


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCc--chh---HHHHHHHHHHhcCC-----hHHHH
Q 038522          320 DLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSY--DAA---VGNALIDMYAKSGE-----IADAN  389 (590)
Q Consensus       320 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~---~~~~l~~~~~~~~~-----~~~A~  389 (590)
                      ..|-+-.  |-.|-   +..=+..+...=+.+.-..++..........  +..   .+.+.+..-.-.|.     -+.-.
T Consensus       329 ~~y~~kf--g~kpc---c~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~  403 (932)
T KOG2053|consen  329 SYYFKKF--GDKPC---CAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL  403 (932)
T ss_pred             HHHHHHh--CCCcH---hHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence            3332211  21221   0000011100001111111111111100000  000   01111111111121     11111


Q ss_pred             HHHHhc----CC---------CCcc---------hHHHHHHHHHhcCCch---HHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522          390 RAFDEM----GD---------KNVI---------SWTSLIAGYAKHGYGH---EAIELYKKMKHEGMVPNDVTFLSLLFA  444 (590)
Q Consensus       390 ~~~~~~----~~---------~~~~---------~~~~l~~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~ll~~  444 (590)
                      .++.++    .+         |...         +-+.|+..+.+.++..   +|+-+++.-... -+-|..+=..++..
T Consensus       404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~-s~hnf~~KLlLiri  482 (932)
T KOG2053|consen  404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTK-SPHNFQTKLLLIRI  482 (932)
T ss_pred             HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhc-CCccHHHHHHHHHH
Confidence            222111    11         1111         3456777888877655   345555554443 13366666678888


Q ss_pred             hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCC-HhHHHHHHHHHHhcCCchH
Q 038522          445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPT-ASLWSAILGACSIYGNTSL  521 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~-~~~~~~l~~~~~~~~~~~~  521 (590)
                      |.-.|-+..|.++|+.+--+ .+..|...|. +...+...|++.-+...+... .+ ..+ ..+-..+..|| +.|.+.+
T Consensus       483 Y~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySk  559 (932)
T KOG2053|consen  483 YSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSK  559 (932)
T ss_pred             HHHhcCChhHHHHHHhcchH-HhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhh
Confidence            88889999999999888766 5555543332 234455667777777776655 11 011 12223333343 6677776


Q ss_pred             HHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522          522 GELAARNLFDMEPE----KSVNYVVLSNIYTAAGAWDNARKTRKLME  564 (590)
Q Consensus       522 a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (590)
                      ..+...--.++.-.    -...-+.........++.++-.+.+..|.
T Consensus       560 I~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~  606 (932)
T KOG2053|consen  560 IPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK  606 (932)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence            66554433333321    12223345666777788888777777665

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.19  E-value=9.3e-05  Score=60.50  Aligned_cols=125  Identities=12%  Similarity=0.077  Sum_probs=82.5

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc---HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHH
Q 038522          403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN---DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR--AEHFSCV  477 (590)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l  477 (590)
                      |..++..+ ..++...+...++.+.+.. +.+   ......+...+...|++++|...|+.+... ...|+  ......+
T Consensus        15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHH
Confidence            33344444 3677777877888887752 222   223334556677888888888888888875 32222  2234456


Q ss_pred             HHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522          478 VDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLF  530 (590)
Q Consensus       478 ~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  530 (590)
                      ...+...|++++|+..++.. +....+..+......+...|++++|+..|++++
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            77788888888888888776 323344556677788888888888888888763

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.16  E-value=0.0033  Score=65.73  Aligned_cols=81  Identities=14%  Similarity=0.104  Sum_probs=46.8

Q ss_pred             HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCC
Q 038522          336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGY  415 (590)
Q Consensus       336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~  415 (590)
                      .+..+..+|.+.|+.+++..+++.+.+.. +-++.+.|.+...|... ++++|.+++.+.           +..+...++
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA-----------V~~~i~~kq  184 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKA-----------IYRFIKKKQ  184 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHH-----------HHHHHhhhc
Confidence            44455555555666666666666665555 23566666666666666 666666665553           223455556


Q ss_pred             chHHHHHHHHHHHc
Q 038522          416 GHEAIELYKKMKHE  429 (590)
Q Consensus       416 ~~~a~~~~~~m~~~  429 (590)
                      +.++.++|.++...
T Consensus       185 ~~~~~e~W~k~~~~  198 (906)
T PRK14720        185 YVGIEEIWSKLVHY  198 (906)
T ss_pred             chHHHHHHHHHHhc
Confidence            66666666666553

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=8.2e-05  Score=70.46  Aligned_cols=127  Identities=12%  Similarity=0.086  Sum_probs=105.5

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC
Q 038522          370 AVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG  449 (590)
Q Consensus       370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  449 (590)
                      .....|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|.+++++..+. .+-+...+..-...|.+.+
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcC
Confidence            334556677777899999999999999877777788889998889999999999999875 2336666666777788999


Q ss_pred             ChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 038522          450 LTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQMNIK  500 (590)
Q Consensus       450 ~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  500 (590)
                      +++.|+++.+++.+   ..|+ ..+|..|..+|...|++++|+-.+..++..
T Consensus       249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~  297 (395)
T PF09295_consen  249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPML  297 (395)
T ss_pred             CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence            99999999999995   4665 669999999999999999999999988433

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.15  E-value=3.9e-06  Score=49.15  Aligned_cols=34  Identities=32%  Similarity=0.644  Sum_probs=29.7

Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCC
Q 038522           97 VSWTAMISGYAQNGYDENALLVFSAMLRSGVRAN  130 (590)
Q Consensus        97 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  130 (590)
                      .+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus         1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            3788899999999999999999999988888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.13  E-value=4.5e-06  Score=48.47  Aligned_cols=33  Identities=27%  Similarity=0.515  Sum_probs=27.6

Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCC
Q 038522           97 VSWTAMISGYAQNGYDENALLVFSAMLRSGVRA  129 (590)
Q Consensus        97 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  129 (590)
                      .+|+.+|++|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            578888888888888888888888888888776

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.09  E-value=5.9e-06  Score=48.38  Aligned_cols=33  Identities=33%  Similarity=0.781  Sum_probs=28.3

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC
Q 038522          199 SWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPD  231 (590)
Q Consensus       199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  231 (590)
                      +||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688888888888888888888888888888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=3.2e-05  Score=68.21  Aligned_cols=113  Identities=13%  Similarity=0.150  Sum_probs=94.2

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHh---cCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522          468 LPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSI---YGNTSLGELAARNLFDMEPEKSVNYVV  542 (590)
Q Consensus       468 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~  542 (590)
                      +-|...|..|...|...|+...|..-|.+. .+.| ++..+..+..++..   ..+..++..+++++++++|.|..+...
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l  232 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL  232 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence            446889999999999999999999999988 4434 55556666655432   236678999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhcCCccCCCceEEeec
Q 038522          543 LSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFLQSS  580 (590)
Q Consensus       543 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  580 (590)
                      |+..+..+|++.+|...|+.|.+.....+|..+.++-+
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~  270 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERS  270 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence            99999999999999999999999888888887766544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.08  E-value=0.00049  Score=55.76  Aligned_cols=133  Identities=11%  Similarity=0.071  Sum_probs=106.6

Q ss_pred             CCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC---CHhHH
Q 038522          431 MVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP---TASLW  506 (590)
Q Consensus       431 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~  506 (590)
                      ..|+...-..|..+..+.|++.+|...|++.... -+..|......+.++....+++.+|...+++. ..+|   ++.+.
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            4677777778888999999999999999998874 44557788888888899999999999999887 2223   34456


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          507 SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      -.+.+.+...|.+++|+..++.++.-.| ++..-...+..+.++|+.++|..-+-.+.+
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d  221 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLREANAQYVAVVD  221 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            6777888899999999999999999888 777777788889999988887765555444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.08  E-value=7.4e-05  Score=58.89  Aligned_cols=106  Identities=9%  Similarity=0.140  Sum_probs=72.2

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHH
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAIL  510 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~  510 (590)
                      ++..+...+.+.|++++|.+.++.+.+.+.-.+ ....+..+..++.+.|++++|.+.++.+ ...|+    ..++..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            445556667777788888888877776421111 1345556777788888888888888776 33333    44567777


Q ss_pred             HHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522          511 GACSIYGNTSLGELAARNLFDMEPEKSVNYVV  542 (590)
Q Consensus       511 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  542 (590)
                      .++...|+.+.|...++++++..|+++.+...
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~  115 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKLA  115 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCcCChhHHHH
Confidence            77788888888888888888888876655443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.05  E-value=1.8e-05  Score=75.24  Aligned_cols=107  Identities=14%  Similarity=0.077  Sum_probs=88.4

Q ss_pred             HHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcC
Q 038522          441 LLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYG  517 (590)
Q Consensus       441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~  517 (590)
                      -...+...|++++|++.|+++.+.   .| +...+..+..+|...|++++|+..++++ .+.| +...|..+..+|...|
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence            345667889999999999999964   44 4677888888999999999999999998 5555 5667888888999999


Q ss_pred             CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522          518 NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA  550 (590)
Q Consensus       518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  550 (590)
                      +++.|+..++++++++|.++.+...+..+..+.
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl  117 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI  117 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999999999999999998888877776654443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.02  E-value=1e-05  Score=46.91  Aligned_cols=33  Identities=30%  Similarity=0.607  Sum_probs=26.2

Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 038522          401 ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP  433 (590)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p  433 (590)
                      .+|++++.+|.+.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467888888888888888888888888877776

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.01  E-value=6.9e-05  Score=63.40  Aligned_cols=96  Identities=10%  Similarity=0.068  Sum_probs=69.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522          472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI  546 (590)
Q Consensus       472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  546 (590)
                      ..+..+...+...|++++|...|++. ...|+    ...+..+...+...|+++.|+..++++++..|.++..+..++.+
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~  115 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI  115 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence            34556666677777777777777766 32232    34667777778888888888888888888888888888888888


Q ss_pred             HHhcCC--------------hHHHHHHHHHhhhcC
Q 038522          547 YTAAGA--------------WDNARKTRKLMEERS  567 (590)
Q Consensus       547 ~~~~g~--------------~~~A~~~~~~~~~~~  567 (590)
                      |...|+              +++|.+.+++..+.+
T Consensus       116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~  150 (172)
T PRK02603        116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA  150 (172)
T ss_pred             HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence            888776              466666666665544

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.01  E-value=2.1e-05  Score=68.85  Aligned_cols=109  Identities=14%  Similarity=0.122  Sum_probs=89.9

Q ss_pred             HHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCc
Q 038522          443 FACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNT  519 (590)
Q Consensus       443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~  519 (590)
                      .-+.+.+++.+|+..|.+.+   .+.| |...|..-..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI---~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~  165 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAI---ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKY  165 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHH---hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcH
Confidence            34678899999999999999   4566 4666777788999999999999998887 66674 46899999999999999


Q ss_pred             hHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 038522          520 SLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWD  554 (590)
Q Consensus       520 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  554 (590)
                      +.|++.|+++++++|++......|-.+--+.+..+
T Consensus       166 ~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  166 EEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             HHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            99999999999999999877777766655555544

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.98  E-value=0.015  Score=54.42  Aligned_cols=119  Identities=10%  Similarity=0.104  Sum_probs=67.0

Q ss_pred             hHHHHHHHHhcCC---CCcchHHHHHH----HHHh---cCCchHHHHHHHHHHHcCCCC----cHHHHHHHHHH--hhcc
Q 038522          385 IADANRAFDEMGD---KNVISWTSLIA----GYAK---HGYGHEAIELYKKMKHEGMVP----NDVTFLSLLFA--CSHT  448 (590)
Q Consensus       385 ~~~A~~~~~~~~~---~~~~~~~~l~~----~~~~---~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~--~~~~  448 (590)
                      -++|.++++.+.+   -|..+-|....    .|.+   ...+..-+.+-+-..+.|+.|    +...-+.+.++  +...
T Consensus       396 dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysq  475 (549)
T PF07079_consen  396 DEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQ  475 (549)
T ss_pred             cHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhc
Confidence            6677777776653   23333332211    1211   122333344444445667766    33334444433  3456


Q ss_pred             CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHH
Q 038522          449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSA  508 (590)
Q Consensus       449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~  508 (590)
                      |++.++.-.-.-+.   .+.|++.+|.-+.-++....++++|..++.+++  |+...++.
T Consensus       476 gey~kc~~ys~WL~---~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~ds  530 (549)
T PF07079_consen  476 GEYHKCYLYSSWLT---KIAPSPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDS  530 (549)
T ss_pred             ccHHHHHHHHHHHH---HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHH
Confidence            77777766555555   457777777777777777778888888877763  45555543

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.94  E-value=8.7e-05  Score=62.58  Aligned_cols=93  Identities=10%  Similarity=-0.068  Sum_probs=74.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN  545 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  545 (590)
                      ...+..++..+...|++++|+..|++. ...|+    ..++..+...+...|++++|+..+++++.+.|.....+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            455666777788889999999988887 33332    3478888889999999999999999999999988888888888


Q ss_pred             HHH-------hcCChHHHHHHHHHh
Q 038522          546 IYT-------AAGAWDNARKTRKLM  563 (590)
Q Consensus       546 ~~~-------~~g~~~~A~~~~~~~  563 (590)
                      +|.       ..|++++|...+++.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHH
Confidence            888       888888666666544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.93  E-value=2.8e-05  Score=54.84  Aligned_cols=60  Identities=8%  Similarity=0.030  Sum_probs=54.0

Q ss_pred             HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      ...|...++++.|.+.+++++.++|+++..+...+.+|...|++++|.+.++...+.++.
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~   61 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPD   61 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCC
Confidence            356788999999999999999999999999999999999999999999999999886653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.93  E-value=1.2e-05  Score=55.89  Aligned_cols=55  Identities=13%  Similarity=0.193  Sum_probs=45.5

Q ss_pred             HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ...|++++|+..++++++.+|+++.++..++.+|.+.|++++|.++++.+.....
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~   56 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP   56 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            3678888899999999888888888888889999999999999988887776554

...

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.92  E-value=0.02  Score=53.70  Aligned_cols=116  Identities=12%  Similarity=0.119  Sum_probs=74.6

Q ss_pred             hhccCC-hHHHHHHHHHHHhhcCCCC-ChhHHHHHH----HHHHhc---CChH---HHHHHHHhcCCCC----CHhHHHH
Q 038522          445 CSHTGL-TCEGWELFTDMINKYRILP-RAEHFSCVV----DLFARR---GQLE---SAYNMIRQMNIKP----TASLWSA  508 (590)
Q Consensus       445 ~~~~~~-~~~a~~~~~~~~~~~~~~~-~~~~~~~l~----~~~~~~---g~~~---~A~~~~~~~~~~p----~~~~~~~  508 (590)
                      +-+.|. -++|+.+++.+.+-   .| |...-+.+.    ..|..+   ..+.   .-...+++.|++|    +...-|.
T Consensus       389 lW~~g~~dekalnLLk~il~f---t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~  465 (549)
T PF07079_consen  389 LWEIGQCDEKALNLLKLILQF---TNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANF  465 (549)
T ss_pred             HHhcCCccHHHHHHHHHHHHh---ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHH
Confidence            344454 67788888877742   33 333322221    122221   1111   2233344447666    3344566


Q ss_pred             HHHH--HHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522          509 ILGA--CSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME  564 (590)
Q Consensus       509 l~~~--~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (590)
                      |..|  ...+|++.++.-.-.=+.+..| ++.+|..++-++....++++|.++++.+.
T Consensus       466 LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP  522 (549)
T PF07079_consen  466 LADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP  522 (549)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence            6654  3578999999877777779999 99999999999999999999999998753

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.89  E-value=0.00014  Score=63.96  Aligned_cols=109  Identities=17%  Similarity=0.153  Sum_probs=89.3

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhc
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARR  484 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~  484 (590)
                      ..-+.+.+++.+|+..|.+.++.  .| |.+-|..-..+|.+.|.++.|++-.+..+   .+.|. ...|..|..+|...
T Consensus        88 GN~~m~~~~Y~eAv~kY~~AI~l--~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al---~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   88 GNKLMKNKDYQEAVDKYTEAIEL--DPTNAVYYCNRAAAYSKLGEYEDAVKDCESAL---SIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHhc--CCCcchHHHHHHHHHHHhcchHHHHHHHHHHH---hcChHHHHHHHHHHHHHHcc
Confidence            34567889999999999999984  66 77888888999999999999999998888   45665 67999999999999


Q ss_pred             CChHHHHHHHHhc-CCCCCHhHHHHHH-HHHHhcCCch
Q 038522          485 GQLESAYNMIRQM-NIKPTASLWSAIL-GACSIYGNTS  520 (590)
Q Consensus       485 g~~~~A~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~  520 (590)
                      |++++|.+.|++. .+.|+..+|..=+ .+-.+.++..
T Consensus       163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~  200 (304)
T KOG0553|consen  163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK  200 (304)
T ss_pred             CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence            9999999999998 8899888775444 3333444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.85  E-value=0.00068  Score=57.35  Aligned_cols=127  Identities=13%  Similarity=0.157  Sum_probs=73.4

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHH
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN--DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVV  478 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~  478 (590)
                      .+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+.   .| +...+..+.
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg  113 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHHHHH
Confidence            455566666666777777777776665432221  245555666666667777777766666643   23 244445555


Q ss_pred             HHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522          479 DLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGA  552 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  552 (590)
                      ..+...|+...+..-++..                  ...+++|.+.++++++.+|++   |..++..+...|+
T Consensus       114 ~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~  166 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR  166 (172)
T ss_pred             HHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence            5555555554444322211                  112677888999999999865   5555555554443

>PRK15331 chaperone protein SicA; Provisional

Probab=97.83  E-value=0.00044  Score=55.60  Aligned_cols=90  Identities=12%  Similarity=0.051  Sum_probs=76.9

Q ss_pred             HHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038522          476 CVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAW  553 (590)
Q Consensus       476 ~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  553 (590)
                      ....-+...|++++|..+|+-+ -. .-+..-|..|...+...+++++|+..|..+.-++++||......+.+|...|+.
T Consensus        42 ~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         42 AHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCH
Confidence            3344567889999999999887 22 235566788888888999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhh
Q 038522          554 DNARKTRKLMEE  565 (590)
Q Consensus       554 ~~A~~~~~~~~~  565 (590)
                      +.|+..|+...+
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998877

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=97.82  E-value=0.00095  Score=61.27  Aligned_cols=159  Identities=13%  Similarity=0.037  Sum_probs=113.4

Q ss_pred             HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH--HhhccCChHHHHHHHHHHHhhcCCCCChhHHHH---------
Q 038522          408 AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF--ACSHTGLTCEGWELFTDMINKYRILPRAEHFSC---------  476 (590)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------  476 (590)
                      .++.-.|++++|...--...+.  .++ ..+..+++  ++...++.+.+...|++..   ...|+...-..         
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkl--d~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le  250 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKL--DAT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLE  250 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhc--ccc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHH
Confidence            4556678888888877776653  221 12222333  3445677888888888877   44555332211         


Q ss_pred             ----HHHHHHhcCChHHHHHHHHhc-CCCCC-----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522          477 ----VVDLFARRGQLESAYNMIRQM-NIKPT-----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI  546 (590)
Q Consensus       477 ----l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  546 (590)
                          =..-..+.|++.+|.+.+.+. ++.|+     ...|.....+..+.|+.++|+.-.+.+++++|.-..+|..-+.+
T Consensus       251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c  330 (486)
T KOG0550|consen  251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC  330 (486)
T ss_pred             HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence                123345779999999999988 55554     44555555667789999999999999999999888889999999


Q ss_pred             HHhcCChHHHHHHHHHhhhcCCccCC
Q 038522          547 YTAAGAWDNARKTRKLMEERSLRKNP  572 (590)
Q Consensus       547 ~~~~g~~~~A~~~~~~~~~~~~~~~~  572 (590)
                      +...++|++|++-+++..+..-.+.+
T Consensus       331 ~l~le~~e~AV~d~~~a~q~~~s~e~  356 (486)
T KOG0550|consen  331 HLALEKWEEAVEDYEKAMQLEKDCEI  356 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccccch
Confidence            99999999999999998775443333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.81  E-value=0.00038  Score=66.32  Aligned_cols=101  Identities=14%  Similarity=0.058  Sum_probs=83.2

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHh
Q 038522          406 LIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFAR  483 (590)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~  483 (590)
                      ....+...|++++|++.|++.++.  .| +...|..+..++...|++++|+..++++.+.   .| +...|..+..+|..
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~   82 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK   82 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence            345667889999999999999985  45 6778888888999999999999999999854   45 47788889999999


Q ss_pred             cCChHHHHHHHHhc-CCCCCHhHHHHHHH
Q 038522          484 RGQLESAYNMIRQM-NIKPTASLWSAILG  511 (590)
Q Consensus       484 ~g~~~~A~~~~~~~-~~~p~~~~~~~l~~  511 (590)
                      .|++++|+..|+++ .+.|+.......+.
T Consensus        83 lg~~~eA~~~~~~al~l~P~~~~~~~~l~  111 (356)
T PLN03088         83 LEEYQTAKAALEKGASLAPGDSRFTKLIK  111 (356)
T ss_pred             hCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            99999999999998 66676655544443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.76  E-value=0.00039  Score=51.42  Aligned_cols=79  Identities=15%  Similarity=0.112  Sum_probs=66.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccC--------chhhHHHHHHHHHhcCCCCchHHHH
Q 038522          100 TAMISGYAQNGYDENALLVFSAMLRSGV-RANQFTYSSALRACARMR--------WLQGGRMIQGSIQKGRFVENLFVKS  170 (590)
Q Consensus       100 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~  170 (590)
                      ..-|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+++.        .+-....+|+.|+..++.|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3456666677999999999999999999 899999999999987653        3446678899999999999999999


Q ss_pred             HHHHHHHh
Q 038522          171 ALLDLYAK  178 (590)
Q Consensus       171 ~l~~~~~~  178 (590)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            99887754

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.76  E-value=7.4e-05  Score=51.19  Aligned_cols=61  Identities=11%  Similarity=0.227  Sum_probs=47.1

Q ss_pred             HHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522          477 VVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       477 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      +...+...|++++|.+.|++. ...| +...+..+...+...|++++|...++++++..|++|
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            456677888888888888888 4445 566778888888888999999999999988888664

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.75  E-value=0.0013  Score=65.59  Aligned_cols=139  Identities=10%  Similarity=0.066  Sum_probs=84.2

Q ss_pred             CCcchHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCcH-HHHHHHHHHhhccC--------ChHHHHHHHHHHHh
Q 038522          398 KNVISWTSLIAGYAKH-----GYGHEAIELYKKMKHEGMVPND-VTFLSLLFACSHTG--------LTCEGWELFTDMIN  463 (590)
Q Consensus       398 ~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~  463 (590)
                      .|...|...+++....     ++...|..+|++..+.  .|+. ..+..+..++....        +...+.+..++...
T Consensus       335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            4555666666554332     2356788888888874  6653 34444333332211        12233333333222


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc
Q 038522          464 KYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV  538 (590)
Q Consensus       464 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  538 (590)
                      ......+...+..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|.+.+++++.++|.++.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt  488 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT  488 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence            1112334556666666666678888888888887 66677777888888888888888888888888888886554

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.74  E-value=4.4e-05  Score=43.07  Aligned_cols=31  Identities=42%  Similarity=0.701  Sum_probs=23.6

Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 038522           97 VSWTAMISGYAQNGYDENALLVFSAMLRSGV  127 (590)
Q Consensus        97 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  127 (590)
                      ++|+.+|++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3677888888888888888888888877663

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.74  E-value=0.0004  Score=51.91  Aligned_cols=92  Identities=15%  Similarity=0.154  Sum_probs=50.1

Q ss_pred             HHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCC
Q 038522          441 LLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGN  518 (590)
Q Consensus       441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~  518 (590)
                      +...+...|++++|...++.+.+.  .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHh
Confidence            344444555555666555555532  1112244445555555666666666666554 2222 33455566666666666


Q ss_pred             chHHHHHHHHHhcCCC
Q 038522          519 TSLGELAARNLFDMEP  534 (590)
Q Consensus       519 ~~~a~~~~~~~~~~~p  534 (590)
                      ++.|...++++.+..|
T Consensus        84 ~~~a~~~~~~~~~~~~   99 (100)
T cd00189          84 YEEALEAYEKALELDP   99 (100)
T ss_pred             HHHHHHHHHHHHccCC
Confidence            7777776666666655

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.73  E-value=0.0001  Score=53.62  Aligned_cols=80  Identities=20%  Similarity=0.286  Sum_probs=39.9

Q ss_pred             cCCchHHHHHHHHHHHcCC-CCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHH
Q 038522          413 HGYGHEAIELYKKMKHEGM-VPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESA  490 (590)
Q Consensus       413 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A  490 (590)
                      .|+++.|+.+++++.+... .|+...+..+..++.+.|++++|..+++. .+   ..| +......+..++.+.|++++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~---~~~~~~~~~~l~a~~~~~l~~y~eA   77 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LK---LDPSNPDIHYLLARCLLKLGKYEEA   77 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HT---HHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hC---CCCCCHHHHHHHHHHHHHhCCHHHH
Confidence            3556666666666665421 11333344455666666666666666655 21   122 223333445556666666666


Q ss_pred             HHHHHh
Q 038522          491 YNMIRQ  496 (590)
Q Consensus       491 ~~~~~~  496 (590)
                      ++.+++
T Consensus        78 i~~l~~   83 (84)
T PF12895_consen   78 IKALEK   83 (84)
T ss_dssp             HHHHHH
T ss_pred             HHHHhc
Confidence            666554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.73  E-value=0.039  Score=51.31  Aligned_cols=105  Identities=15%  Similarity=0.137  Sum_probs=54.9

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHH
Q 038522          375 LIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEG  454 (590)
Q Consensus       375 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  454 (590)
                      .+.-+...|+...|.++-.+..-|+..-|...+.+++..++|++...+...      +-++.-|..++.+|.+.|+..+|
T Consensus       183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA  256 (319)
T PF04840_consen  183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA  256 (319)
T ss_pred             HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence            344444555666666665555555666666666666666666554443221      11234555555566666666665


Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522          455 WELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQ  496 (590)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  496 (590)
                      ..+..++.           +..-+..|.++|++.+|.+.-.+
T Consensus       257 ~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  257 SKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence            55554421           12334555566666555554433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.69  E-value=0.0017  Score=64.79  Aligned_cols=136  Identities=14%  Similarity=0.128  Sum_probs=99.6

Q ss_pred             CCCCcHHHHHHHHHHhhc--c---CChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhc--------CChHHHHHHHH
Q 038522          430 GMVPNDVTFLSLLFACSH--T---GLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARR--------GQLESAYNMIR  495 (590)
Q Consensus       430 g~~p~~~~~~~ll~~~~~--~---~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~A~~~~~  495 (590)
                      +.+.|...|..++++...  .   +....|..+|++..+.   .|+ ...+..+..++...        ++.+.+.+..+
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~  408 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD  408 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence            345678888888887543  2   2367899999999954   777 44555444444222        12344555555


Q ss_pred             hc----CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          496 QM----NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       496 ~~----~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      +.    ..+.++..+..+...+...|++++|...+++++.++| +..+|..++.+|...|+.++|.+.+++....++.
T Consensus       409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            53    2334557787777777788999999999999999999 6889999999999999999999999998775543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.67  E-value=3.3e-05  Score=44.26  Aligned_cols=33  Identities=21%  Similarity=0.510  Sum_probs=31.0

Q ss_pred             HHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038522          526 ARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARK  558 (590)
Q Consensus       526 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  558 (590)
                      |+++++++|+++.+|..|+.+|...|++++|++
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            688999999999999999999999999999963

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.66  E-value=6.5e-05  Score=42.33  Aligned_cols=31  Identities=39%  Similarity=0.809  Sum_probs=22.1

Q ss_pred             chHHHHHHHHHhcCCchHHHHHHHHHHHcCC
Q 038522          401 ISWTSLIAGYAKHGYGHEAIELYKKMKHEGM  431 (590)
Q Consensus       401 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~  431 (590)
                      ++|++++++|++.|++++|.++|++|.+.|+
T Consensus         1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            3677777777777777777777777776653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.65  E-value=0.00069  Score=64.59  Aligned_cols=119  Identities=8%  Similarity=0.065  Sum_probs=96.2

Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHhccCC-C-----CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH
Q 038522          162 FVENLFVKSALLDLYAKCGWIEDAWILFERIER-K-----DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL  235 (590)
Q Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  235 (590)
                      .+.+......+++.+....+.+.+..++.+... |     -..+.+++++.|...|..+.++++++.=...|+-||..|+
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            344555666667777777777777777766654 1     2345679999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 038522          236 GSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKY  280 (590)
Q Consensus       236 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  280 (590)
                      +.+|..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999999888777777777666666665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.085  Score=52.87  Aligned_cols=336  Identities=13%  Similarity=0.059  Sum_probs=169.1

Q ss_pred             cCCCCCHhhHHH-----HHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC---hHHHHHHHhccCC--
Q 038522          125 SGVRANQFTYSS-----ALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGW---IEDAWILFERIER--  194 (590)
Q Consensus       125 ~~~~p~~~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~--  194 (590)
                      -|++.+..-|..     +|.-+...+.+..|.++-..+...-..- ..+|......+.+..+   .+-+..+-+++..  
T Consensus       426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~  504 (829)
T KOG2280|consen  426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL  504 (829)
T ss_pred             cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC
Confidence            466666666654     4555667777888887776664322112 4566666666666532   2334444445554  


Q ss_pred             CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCC----CCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHH
Q 038522          195 KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGM----KPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLT  270 (590)
Q Consensus       195 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  270 (590)
                      ....+|..+.+.....|+.+-|..+++.=...+.    -.+..-+...+.-+...|+.+....++-++...-   +...+
T Consensus       505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s~l  581 (829)
T KOG2280|consen  505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRSSL  581 (829)
T ss_pred             CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHHHH
Confidence            4556788888888888888888887754322211    0122344555666677777777776666655421   11111


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhccCC-CccchHHHHHHHHhcCCChHHHHHHH--HHH----HHcCCCCCHHHHHHHHHH
Q 038522          271 GSLIDVYAKYGSIRSAYQLYRSMLKT-DIISCTALISGFARDDNHSKEAFDLF--KDM----ILKKMGIDDVILCLMLNI  343 (590)
Q Consensus       271 ~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~a~~~~--~~~----~~~~~~p~~~~~~~ll~~  343 (590)
                            +....+...|..+|.+..+. |..+   +-..|-...+ . ++...|  +..    ...|..|+.   .....+
T Consensus       582 ------~~~l~~~p~a~~lY~~~~r~~~~~~---l~d~y~q~dn-~-~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~  647 (829)
T KOG2280|consen  582 ------FMTLRNQPLALSLYRQFMRHQDRAT---LYDFYNQDDN-H-QALASFHLQASYAAETIEGRIPAL---KTAANA  647 (829)
T ss_pred             ------HHHHHhchhhhHHHHHHHHhhchhh---hhhhhhcccc-h-hhhhhhhhhhhhhhhhhcccchhH---HHHHHH
Confidence                  11112233344444443221 1110   1111111111 1 111111  110    011222322   222333


Q ss_pred             HhchhhhHh----------HHHHHHHHH-HhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHh
Q 038522          344 CANVASLNL----------GRQIHAFAF-KYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAK  412 (590)
Q Consensus       344 ~~~~~~~~~----------a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~  412 (590)
                      +.+.....-          -..+.+.+. +.+.....-+.+--+.-+...|+..+|.++-.+.+-||-..|..-+.+++.
T Consensus       648 ~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~  727 (829)
T KOG2280|consen  648 FAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALAD  727 (829)
T ss_pred             HhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHh
Confidence            333322111          111111111 122222233334445555666777777777777777777777777777777


Q ss_pred             cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 038522          413 HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYN  492 (590)
Q Consensus       413 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  492 (590)
                      .+++++-.++-+.+.      ++.-|.....+|.+.|+.++|.+++-+..   |..       -.+.+|.+.|++.+|.+
T Consensus       728 ~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~---~l~-------ekv~ay~~~~~~~eAad  791 (829)
T KOG2280|consen  728 IKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG---GLQ-------EKVKAYLRVGDVKEAAD  791 (829)
T ss_pred             hhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccC---ChH-------HHHHHHHHhccHHHHHH
Confidence            777766555544332      14455556677777777777777765553   111       35566777777777665


Q ss_pred             HH
Q 038522          493 MI  494 (590)
Q Consensus       493 ~~  494 (590)
                      .-
T Consensus       792 ~A  793 (829)
T KOG2280|consen  792 LA  793 (829)
T ss_pred             HH
Confidence            53

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.63  E-value=0.00044  Score=62.16  Aligned_cols=61  Identities=8%  Similarity=-0.055  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .+..+..+|...|+++.|...|+++++..|++   +.++..++.+|...|++++|.+.++.+.+
T Consensus       182 A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        182 ANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33344444444555555555555555444432   22233334444455555555555554444

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.61  E-value=0.0012  Score=51.09  Aligned_cols=88  Identities=11%  Similarity=0.003  Sum_probs=55.8

Q ss_pred             HHHHHHhcCChHHHHHHHHhc---CCCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC---CcchHHHHHHHHH
Q 038522          477 VVDLFARRGQLESAYNMIRQM---NIKPT--ASLWSAILGACSIYGNTSLGELAARNLFDMEPE---KSVNYVVLSNIYT  548 (590)
Q Consensus       477 l~~~~~~~g~~~~A~~~~~~~---~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~  548 (590)
                      +..++-..|+.++|+.+|++.   +....  ...+-.+..++...|++++|+..+++.....|+   +......++.++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            344555667777777777665   32222  234445556677777777777777777776665   4555566667777


Q ss_pred             hcCChHHHHHHHHHhh
Q 038522          549 AAGAWDNARKTRKLME  564 (590)
Q Consensus       549 ~~g~~~~A~~~~~~~~  564 (590)
                      ..|+.++|++++-...
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            7777777777765543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.61  E-value=9.7e-05  Score=51.19  Aligned_cols=58  Identities=12%  Similarity=0.218  Sum_probs=27.0

Q ss_pred             hcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522          483 RRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY  540 (590)
Q Consensus       483 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  540 (590)
                      ..|++++|++.|+++ ...| +...+..+...|.+.|++++|.+.++++...+|+++..+
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~   62 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ   62 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence            344455555555544 2222 334444455555555555555555555555555443333

...

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.60  E-value=0.00073  Score=64.44  Aligned_cols=119  Identities=8%  Similarity=0.047  Sum_probs=95.9

Q ss_pred             CCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-C-----CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhH
Q 038522           61 YESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE-R-----NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTY  134 (590)
Q Consensus        61 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  134 (590)
                      .+.+......+++......+++.+..++.+... |     -..|..++|+.|...|..+.++.++..=..-|+-||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            355666777778888788888888888777654 2     2345679999999999999999999999899999999999


Q ss_pred             HHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhc
Q 038522          135 SSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKC  179 (590)
Q Consensus       135 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  179 (590)
                      +.+|..+.+.|++..|.++...|...+.-.+..++..-+.+|.+.
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999988877767767766666665555

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.60  E-value=0.001  Score=49.22  Aligned_cols=79  Identities=14%  Similarity=0.122  Sum_probs=65.7

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHcCC-CCChhhHHHHHHHhccCC--------ChhHHHHHHHHHHHhCCCCChhHHH
Q 038522          201 NAMIGGLAMQGFNDDSFWLFRSMMRQGM-KPDCFTLGSILRASVGGI--------ELMKISQIHDLIIKLGLESSNKLTG  271 (590)
Q Consensus       201 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~  271 (590)
                      ...|..+...+++.....+|+.++..|+ .|+..+|+.++.+.++..        ++-....+|+.|+..+++|+..+|+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            4456667777999999999999999999 999999999999876643        3455678899999999999999999


Q ss_pred             HHHHHHHh
Q 038522          272 SLIDVYAK  279 (590)
Q Consensus       272 ~l~~~~~~  279 (590)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            98887765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.57  E-value=0.063  Score=49.45  Aligned_cols=273  Identities=17%  Similarity=0.141  Sum_probs=171.8

Q ss_pred             cCChHHHHHHHHhc---cCCCccchHHHHHH--HHhcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhchhhhHh
Q 038522          280 YGSIRSAYQLYRSM---LKTDIISCTALISG--FARDDNHSKEAFDLFKDMILKKMGIDD--VILCLMLNICANVASLNL  352 (590)
Q Consensus       280 ~g~~~~a~~~~~~~---~~~~~~~~~~l~~~--~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~  352 (590)
                      .|+-..|.+.-.+.   ...|....-.++.+  -.-.|+ ++.|.+-|+.|..   .|..  ..+..+.-..-+.|+.+.
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~-~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Garea  172 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGD-YEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREA  172 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCc-hHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHH
Confidence            34555555444433   23343333333332  233466 7777777777763   2222  223334444456677777


Q ss_pred             HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC-----CCCcc--hHHHHHHHHH---hcCCchHHHHH
Q 038522          353 GRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG-----DKNVI--SWTSLIAGYA---KHGYGHEAIEL  422 (590)
Q Consensus       353 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~--~~~~l~~~~~---~~~~~~~a~~~  422 (590)
                      |.++-+.....-+. -.-...+.++..+..|+++.|+++.+.-.     +++..  .--.|+.+-.   -..++..|...
T Consensus       173 Ar~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~  251 (531)
T COG3898         173 ARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDD  251 (531)
T ss_pred             HHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            77776666554433 34455778888888999999999888654     34432  1122222111   12346666666


Q ss_pred             HHHHHHcCCCCcHHH-HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc----
Q 038522          423 YKKMKHEGMVPNDVT-FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM----  497 (590)
Q Consensus       423 ~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----  497 (590)
                      -.+..+  +.||... -..-..++.+.|+..++-.+++.+-+.   .|.+......  .+.+.|+.  ++.-+++.    
T Consensus       252 A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY--~~ar~gdt--a~dRlkRa~~L~  322 (531)
T COG3898         252 ALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLY--VRARSGDT--ALDRLKRAKKLE  322 (531)
T ss_pred             HHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHH--HHhcCCCc--HHHHHHHHHHHH
Confidence            666554  5776543 334456788999999999999999865   6666655332  23455553  33333333    


Q ss_pred             CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHhhhcC
Q 038522          498 NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA-GAWDNARKTRKLMEERS  567 (590)
Q Consensus       498 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~  567 (590)
                      ..+| +..+...+..+....|++..|..-.+.+....| ...+|..|+.+-... |+-.++..++-+..+.-
T Consensus       323 slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~p-res~~lLlAdIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         323 SLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAP-RESAYLLLADIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             hcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCc-hhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence            4455 456667777888899999999999999999999 778888999887765 99999999998766643

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.57  E-value=0.0025  Score=51.82  Aligned_cols=102  Identities=13%  Similarity=0.173  Sum_probs=89.9

Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--C-CCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC--CCcchH
Q 038522          466 RILPRAEHFSCVVDLFARRGQLESAYNMIRQM--N-IKPTASLWSAILGACSIYGNTSLGELAARNLFDMEP--EKSVNY  540 (590)
Q Consensus       466 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~  540 (590)
                      .+.|++...-.|..++.+.|++.||...|++.  | +.-|+...-.+.++....+++..|...++++.+..|  ..|...
T Consensus        84 ~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~  163 (251)
T COG4700          84 AIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH  163 (251)
T ss_pred             hhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence            56788888888999999999999999999998  4 445777888899999999999999999999999988  467788


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          541 VVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       541 ~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      ..++++|..+|++++|...|+...+.-
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~y  190 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISYY  190 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHhC
Confidence            899999999999999999999887644

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.56  E-value=0.015  Score=51.96  Aligned_cols=171  Identities=11%  Similarity=0.087  Sum_probs=100.7

Q ss_pred             HHHHHHhcCChHHHHHHHHhcCC--CCcc-h---HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHhh
Q 038522          375 LIDMYAKSGEIADANRAFDEMGD--KNVI-S---WTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN--DVTFLSLLFACS  446 (590)
Q Consensus       375 l~~~~~~~~~~~~A~~~~~~~~~--~~~~-~---~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~  446 (590)
                      ....+.+.|++++|.+.|+++..  |+.. .   .-.++.++.+.+++++|...+++..+.  .|+  ...+...+.+.+
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~~a~Y~~g~~  115 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVLYMRGLT  115 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchHHHHHHHHHh
Confidence            34445567888888888887764  3221 1   123556777788888888888888774  332  222333333322


Q ss_pred             c--cC---------------C---hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHH
Q 038522          447 H--TG---------------L---TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLW  506 (590)
Q Consensus       447 ~--~~---------------~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~  506 (590)
                      .  .+               +   ...|...|+.+.++   -|+.             .-..+|...+..+...--.. -
T Consensus       116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---yP~S-------------~ya~~A~~rl~~l~~~la~~-e  178 (243)
T PRK10866        116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---YPNS-------------QYTTDATKRLVFLKDRLAKY-E  178 (243)
T ss_pred             hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---CcCC-------------hhHHHHHHHHHHHHHHHHHH-H
Confidence            1  11               1   12445555555554   2332             11233333222221000001 1


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522          507 SAILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAAGAWDNARKTRKLME  564 (590)
Q Consensus       507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (590)
                      -.+.+-|.+.|.+..|..-++.+++.-|+.   +.++..+..+|...|..++|.++...+.
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            134456788999999999999999888754   4457778899999999999999887654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.53  E-value=0.015  Score=53.61  Aligned_cols=96  Identities=19%  Similarity=0.205  Sum_probs=47.4

Q ss_pred             HHHHHHhhcc-CChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhcC---C-----CCCHh-
Q 038522          439 LSLLFACSHT-GLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQMN---I-----KPTAS-  504 (590)
Q Consensus       439 ~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-----~p~~~-  504 (590)
                      ..+...|... |++++|.+.|++..+-+.....    ..++..+...+.+.|++++|.++|++..   .     +.+.. 
T Consensus       118 ~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~  197 (282)
T PF14938_consen  118 KELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKE  197 (282)
T ss_dssp             HHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHH
Confidence            3344445555 6666666666665543211111    2344555666667777777777776651   0     11111 


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      .+-..+-.+...||+..|...+++....+|
T Consensus       198 ~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~  227 (282)
T PF14938_consen  198 YFLKAILCHLAMGDYVAARKALERYCSQDP  227 (282)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            111222234456677777777777776666

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.52  E-value=0.079  Score=49.33  Aligned_cols=109  Identities=12%  Similarity=0.178  Sum_probs=81.4

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhc
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIY  516 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~  516 (590)
                      +.+..+.-|...|....|.++-.+.    . .|+...|...+.+|+..+++++-.++...   +-+|..|.-++.+|.+.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F----k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~  250 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF----K-VPDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY  250 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc----C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence            4455566677778877777765555    3 47888899999999999999888776543   33557788999999999


Q ss_pred             CCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522          517 GNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL  562 (590)
Q Consensus       517 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  562 (590)
                      |+..+|.....+         ..+..-...|.+.|+|.+|.+.--+
T Consensus       251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHH
Confidence            999988888876         2235667778889999988766433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.51  E-value=0.0053  Score=52.95  Aligned_cols=130  Identities=8%  Similarity=-0.079  Sum_probs=62.6

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHH-----HH
Q 038522          404 TSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSC-----VV  478 (590)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~-----l~  478 (590)
                      +.++..+.-.|.+.-.+..+++.++..-+.++.....+.+.-.+.|+.+.|...|++..+. .-+.+...++.     ..
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhh
Confidence            4444555555556566666666666433335555566666666666666666666655544 22222222222     22


Q ss_pred             HHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          479 DLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      ..|.-++++.+|...+.++  ..+.++...|.-.-...-.|+..+|++..+.+.+..|
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            2333444555555555554  1111222223222222234555555555555555555

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.51  E-value=0.0025  Score=58.52  Aligned_cols=131  Identities=11%  Similarity=0.217  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH-hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA-CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL  480 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  480 (590)
                      +|-.++....+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|.++|+...+.+  ..+...|...++.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--PSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--TT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHH
Confidence            34555555555555666666666665321 1122333332222 112344555666666666542  3345555666666


Q ss_pred             HHhcCChHHHHHHHHhc-CCCCCH----hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          481 FARRGQLESAYNMIRQM-NIKPTA----SLWSAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       481 ~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                      +.+.|+.+.|..+|++. ..-|..    ..|...+.--.+.|+.+.+..+.+++.+..|+
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            66666666666666665 222222    35566665555666666666666666655553

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.51  E-value=0.0028  Score=53.36  Aligned_cols=98  Identities=10%  Similarity=0.069  Sum_probs=43.4

Q ss_pred             HHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHH-
Q 038522          439 LSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACS-  514 (590)
Q Consensus       439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~-  514 (590)
                      ..+...+...|++++|...|++......-.+ ...++..+..++...|++++|+..+++. ...| ...++..+...+. 
T Consensus        39 ~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~  118 (168)
T CHL00033         39 YRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHY  118 (168)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            3333344444555555555544442200000 1123444444555555555555555444 2222 2223333333333 


Q ss_pred             ------hcCCch-------HHHHHHHHHhcCCCCC
Q 038522          515 ------IYGNTS-------LGELAARNLFDMEPEK  536 (590)
Q Consensus       515 ------~~~~~~-------~a~~~~~~~~~~~p~~  536 (590)
                            ..|+++       +|...++++++.+|.+
T Consensus       119 ~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~  153 (168)
T CHL00033        119 RGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN  153 (168)
T ss_pred             hhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence                  445544       5566666677777743

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.45  E-value=0.0005  Score=64.89  Aligned_cols=62  Identities=6%  Similarity=-0.104  Sum_probs=28.9

Q ss_pred             hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV---NYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ..|+.+..+|...|++++|+..++++++++|++..   +|++++.+|...|+.++|++.+++..+
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444432   244444444444444444444444444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.41  E-value=0.0027  Score=58.30  Aligned_cols=129  Identities=9%  Similarity=0.063  Sum_probs=100.7

Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhc--CCCCCHhHHHHHHHH
Q 038522          436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR-RGQLESAYNMIRQM--NIKPTASLWSAILGA  512 (590)
Q Consensus       436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~  512 (590)
                      .+|..++....+.+..+.|..+|.+..+.  -..+..+|-.....-.. .++.+.|..+|+..  .++.+...|...+.-
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            46788888888999999999999999853  22345556665555444 56777799999998  555677889999988


Q ss_pred             HHhcCCchHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          513 CSIYGNTSLGELAARNLFDMEPEKS---VNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       513 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      +...|+.+.|..+|++++..-|.+.   ..|..++..=.+.|+.+.+.++.+.+.+.
T Consensus        80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8999999999999999998777444   57888999888999999999999888774

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.41  E-value=0.00038  Score=48.35  Aligned_cols=65  Identities=15%  Similarity=0.256  Sum_probs=49.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcC-CchHHHHHHHHHhcCCC
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYG-NTSLGELAARNLFDMEP  534 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p  534 (590)
                      +...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            3456677777788888888888888877 4344 4566777888888888 68888888888888877

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.40  E-value=0.016  Score=53.57  Aligned_cols=150  Identities=19%  Similarity=0.252  Sum_probs=89.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhc-CCchHHHHHHHHHHHc----CCCCc--HHHHHHHHHH
Q 038522          372 GNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKH-GYGHEAIELYKKMKHE----GMVPN--DVTFLSLLFA  444 (590)
Q Consensus       372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~  444 (590)
                      |...++.|...|++..|-+.+..           +...|... |++++|++.|++..+.    | .+.  ..++..+...
T Consensus        97 ~~~A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l  164 (282)
T PF14938_consen   97 YEKAIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADL  164 (282)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHH
Confidence            34455667777777777666554           45666666 7888998888876542    3 221  3456677778


Q ss_pred             hhccCChHHHHHHHHHHHhhcCCCC-----Ch-hHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC------HhHHHHHHH
Q 038522          445 CSHTGLTCEGWELFTDMINKYRILP-----RA-EHFSCVVDLFARRGQLESAYNMIRQM-NIKPT------ASLWSAILG  511 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~~~~~~~-----~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~------~~~~~~l~~  511 (590)
                      +.+.|++++|.++|+++.... ...     +. ..+-..+-++...||+..|.+.+++. ...|.      ......|+.
T Consensus       165 ~~~l~~y~~A~~~~e~~~~~~-l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~  243 (282)
T PF14938_consen  165 YARLGRYEEAIEIYEEVAKKC-LENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLE  243 (282)
T ss_dssp             HHHTT-HHHHHHHHHHHHHTC-CCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHh-hcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Confidence            889999999999999887642 211     11 12333444667789999999999887 33332      234566666


Q ss_pred             HHHh--cCCchHHHHHHHHHhcCCC
Q 038522          512 ACSI--YGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       512 ~~~~--~~~~~~a~~~~~~~~~~~p  534 (590)
                      ++-.  ...++.++.-|..+.+++|
T Consensus       244 A~~~~D~e~f~~av~~~d~~~~ld~  268 (282)
T PF14938_consen  244 AYEEGDVEAFTEAVAEYDSISRLDN  268 (282)
T ss_dssp             HHHTT-CCCHHHHCHHHTTSS---H
T ss_pred             HHHhCCHHHHHHHHHHHcccCccHH
Confidence            6632  2345556666665555555

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.38  E-value=0.061  Score=49.54  Aligned_cols=276  Identities=13%  Similarity=0.039  Sum_probs=174.7

Q ss_pred             cCChHHHHHHhhhC-CCCCCCcccHHHHHHHh--hcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHH
Q 038522           10 TGQLKQALKFSLSC-PDTLLDPSTYMSLLQFC--IDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARK   86 (590)
Q Consensus        10 ~g~~~~a~~~~~~~-~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~   86 (590)
                      .|+-..|.+.-.+. .-...|...+..+|.+-  .-.|+++.|.+-|+.|.... +.-..-...|.-.--+.|+.+.|..
T Consensus        97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyleAqr~GareaAr~  175 (531)
T COG3898          97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYLEAQRLGAREAARH  175 (531)
T ss_pred             cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHHHHHhcccHHHHHH
Confidence            57777888877777 45667777777777644  45689999999999997531 1111122333333446788888888


Q ss_pred             HhccCCC--CC-ccchHHHHHHHHhcCChHHHHHHHHHHHHcC-CCCCHhh--HHHHHHHHh---ccCchhhHHHHHHHH
Q 038522           87 AFDRMPE--RN-VVSWTAMISGYAQNGYDENALLVFSAMLRSG-VRANQFT--YSSALRACA---RMRWLQGGRMIQGSI  157 (590)
Q Consensus        87 ~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~--~~~ll~~~~---~~~~~~~a~~~~~~~  157 (590)
                      .-+..-.  |. .-.+...+...+..|+++.|+++++.-++.. +.++..-  -..|+.+-+   -..+...|...-.+.
T Consensus       176 yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a  255 (531)
T COG3898         176 YAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEA  255 (531)
T ss_pred             HHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence            7776554  33 3467788999999999999999998877643 3444332  233333322   123566666665555


Q ss_pred             HhcCCCCchHH-HHHHHHHHHhcCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHH-cCCCC-Ch
Q 038522          158 QKGRFVENLFV-KSALLDLYAKCGWIEDAWILFERIER--KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR-QGMKP-DC  232 (590)
Q Consensus       158 ~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p-~~  232 (590)
                      .+  +.||..- -..-..++.+.|+..++-.+++.+=+  |.+..+.  +....+.|+  .+++-++.... ..++| +.
T Consensus       256 ~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~slk~nna  329 (531)
T COG3898         256 NK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGD--TALDRLKRAKKLESLKPNNA  329 (531)
T ss_pred             hh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCC--cHHHHHHHHHHHHhcCccch
Confidence            55  3454432 22335678889999999988888754  3333332  223334444  44444433322 12344 45


Q ss_pred             hhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhcc
Q 038522          233 FTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAK-YGSIRSAYQLYRSML  294 (590)
Q Consensus       233 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~  294 (590)
                      .+...+..+....|++..|..--+....  ..|....|..|.+.-.. .|+-.++...+.+..
T Consensus       330 es~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav  390 (531)
T COG3898         330 ESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAV  390 (531)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence            5666677777888888887766665554  36778888877777654 499999999887773

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.37  E-value=0.065  Score=50.33  Aligned_cols=159  Identities=12%  Similarity=0.036  Sum_probs=95.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCC-------CcchHHHHHHHHHh---cCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522          374 ALIDMYAKSGEIADANRAFDEMGDK-------NVISWTSLIAGYAK---HGYGHEAIELYKKMKHEGMVPNDVTFLSLLF  443 (590)
Q Consensus       374 ~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  443 (590)
                      .++-.|....+++...++.+.+...       ....-....-++.+   .|+.++|++++..+....-.+++.+|..+..
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444566677777777777777643       11112233445555   7788888888888666556777778777766


Q ss_pred             Hhhc---------cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChH----HHHHHH---Hhc-------CCC
Q 038522          444 ACSH---------TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLE----SAYNMI---RQM-------NIK  500 (590)
Q Consensus       444 ~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~----~A~~~~---~~~-------~~~  500 (590)
                      .|-.         ....++|+..|.+.-   .+.|+...--.++..+...|...    +..++-   ..+       .-.
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            5432         123566777666555   34555333222233333333222    222222   111       123


Q ss_pred             CCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          501 PTASLWSAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       501 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                      .+-+.+.+++.++.-.|++++|.+.++++.++.|+
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            45566688889999999999999999999999873

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.36  E-value=0.00026  Score=43.69  Aligned_cols=42  Identities=19%  Similarity=0.374  Sum_probs=37.5

Q ss_pred             hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522          504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN  545 (590)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  545 (590)
                      .+|..+..+|...|++++|++.++++++.+|+++.++..|+.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            467788899999999999999999999999999999888764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.32  E-value=0.00087  Score=53.69  Aligned_cols=94  Identities=12%  Similarity=-0.038  Sum_probs=69.0

Q ss_pred             ccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHH
Q 038522           31 STYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYA  107 (590)
Q Consensus        31 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~  107 (590)
                      .....+...+...|++++|.++|+.+...+ +.+..-|-.|..++-..|++++|+..|.....   .|+.++-.+..++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            344555566667788888888888887765 44666677777777788888888888877543   45667777778888


Q ss_pred             hcCChHHHHHHHHHHHHc
Q 038522          108 QNGYDENALLVFSAMLRS  125 (590)
Q Consensus       108 ~~~~~~~a~~~~~~m~~~  125 (590)
                      ..|+.+.|.+.|+..+..
T Consensus       115 ~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            888888888888877654

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.30  E-value=0.0047  Score=55.60  Aligned_cols=102  Identities=11%  Similarity=0.084  Sum_probs=70.1

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC----CHhHHHHHH
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP----TASLWSAIL  510 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~  510 (590)
                      .|...+....+.|++++|...|+.+.+.+.-.+ ....+..+...|...|++++|...|+.+ ...|    .+..+..+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            344444444566888888888888887631111 0245667778888888888888888887 2223    244555566


Q ss_pred             HHHHhcCCchHHHHHHHHHhcCCCCCcc
Q 038522          511 GACSIYGNTSLGELAARNLFDMEPEKSV  538 (590)
Q Consensus       511 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~  538 (590)
                      ..+...|+.+.|...|+++++..|++..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence            6777889999999999999998885543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.30  E-value=0.055  Score=53.11  Aligned_cols=56  Identities=27%  Similarity=0.232  Sum_probs=33.4

Q ss_pred             HHHHHHHHhccCchhhHH--HHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcc
Q 038522          134 YSSALRACARMRWLQGGR--MIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERI  192 (590)
Q Consensus       134 ~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  192 (590)
                      ++..=.+|.+.++..--+  --++++.+.|-.|+...   +...++-.|++.+|-++|.+-
T Consensus       601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~  658 (1081)
T KOG1538|consen  601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS  658 (1081)
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc
Confidence            333334444444433322  23556777777777654   445567788888888888663

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.28  E-value=0.0028  Score=58.18  Aligned_cols=129  Identities=11%  Similarity=-0.011  Sum_probs=83.9

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHH---HhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-------C-CCCCHh
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDM---INKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-------N-IKPTAS  504 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~-~~p~~~  504 (590)
                      .|..|...|.-.|+++.|+...+.-   .+.+|-+.. ...+..+..++.-.|+++.|.+.|+..       + ......
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            3445555555667888887665432   222333222 445667778888888888888887764       2 122344


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcC----C--CCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDM----E--PEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +..+|.++|.-..++++|+....+=+.+    +  -....++.+|+.+|...|..+.|..+.+.-++
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5566777777777888888777665532    2  13456788888888888888888887766554

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.27  E-value=0.002  Score=54.21  Aligned_cols=88  Identities=13%  Similarity=0.177  Sum_probs=64.7

Q ss_pred             CCccchHHHHHHHHh-----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhcc----------------CchhhHHH
Q 038522           94 RNVVSWTAMISGYAQ-----NGYDENALLVFSAMLRSGVRANQFTYSSALRACARM----------------RWLQGGRM  152 (590)
Q Consensus        94 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~~~~~a~~  152 (590)
                      .+..+|..+++.|.+     .|..+-....+..|.+-|+.-|..+|+.||..+=+.                .+-+-|.+
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~  124 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID  124 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence            455556666665543     355666667777888888888888888888775432                24566788


Q ss_pred             HHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 038522          153 IQGSIQKGRFVENLFVKSALLDLYAKCGW  181 (590)
Q Consensus       153 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  181 (590)
                      ++++|...|+-||..++..+++.+++.+.
T Consensus       125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  125 LLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            99999999999999999999988877665

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.25  E-value=0.0033  Score=53.00  Aligned_cols=97  Identities=14%  Similarity=0.197  Sum_probs=73.8

Q ss_pred             HHHHhcc--CCCCcchHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCC------------
Q 038522          186 WILFERI--ERKDVVSWNAMIGGLAMQ-----GFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGI------------  246 (590)
Q Consensus       186 ~~~~~~~--~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------  246 (590)
                      ...|+..  ..++-.+|..+++.|.+.     |..+=....++.|.+-|+.-|..+|+.|++.+=+..            
T Consensus        34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~  113 (228)
T PF06239_consen   34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM  113 (228)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence            3445444  345666777777777644     556666677888889999999999999998865432            


Q ss_pred             ----ChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCC
Q 038522          247 ----ELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGS  282 (590)
Q Consensus       247 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  282 (590)
                          +-+-+.+++++|...|+-||..++..+++.+++.+.
T Consensus       114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                456789999999999999999999999999877654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.15  E-value=0.026  Score=50.48  Aligned_cols=176  Identities=15%  Similarity=0.072  Sum_probs=104.2

Q ss_pred             CcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHH---HHHHHHHHhcCChHHHHHHhccCCC--CC--ccchHH
Q 038522           29 DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLS---TKVIIFYAKVGDVLSARKAFDRMPE--RN--VVSWTA  101 (590)
Q Consensus        29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~--~~--~~~~~~  101 (590)
                      ++..+......+...|++++|...|+.+....+. +....   -.++.+|.+.++++.|...|++..+  |+  -..|..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            3334444555666789999999999999887533 33333   4556778889999999999988765  32  123333


Q ss_pred             HHHHHHh--c---------------CCh---HHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC
Q 038522          102 MISGYAQ--N---------------GYD---ENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGR  161 (590)
Q Consensus       102 li~~~~~--~---------------~~~---~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  161 (590)
                      .+.+.+.  .               .|.   ..|++.|+++++.  -|+..             -..+|...+..+... 
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S~-------------ya~~A~~rl~~l~~~-  173 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNSQ-------------YTTDATKRLVFLKDR-  173 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCCh-------------hHHHHHHHHHHHHHH-
Confidence            3443321  1               122   3455666666653  24332             223333322222221 


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CC----cchHHHHHHHHHhcCCchHHHHHHHHHH
Q 038522          162 FVENLFVKSALLDLYAKCGWIEDAWILFERIER--KD----VVSWNAMIGGLAMQGFNDDSFWLFRSMM  224 (590)
Q Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~  224 (590)
                        .- ..--.+...|.+.|.+..|..-|+.+.+  |+    ......++.++...|..++|.+....+.
T Consensus       174 --la-~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        174 --LA-KYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             --HH-HHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence              00 0011356678888888888887777764  32    2345567788888999988888776654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.14  E-value=0.06  Score=52.83  Aligned_cols=68  Identities=12%  Similarity=0.134  Sum_probs=40.3

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522          315 SKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDE  394 (590)
Q Consensus       315 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  394 (590)
                      +-+.+.-++++.++|-.|+....   ...|+-.|.+.+|.++|..   .|.+      |..+++|.....+|.|.+++..
T Consensus       616 ~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~  683 (1081)
T KOG1538|consen  616 YLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS  683 (1081)
T ss_pred             HHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence            44555566777778877876543   4456667777777766642   3332      4445555555555555555543

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.08  E-value=0.0019  Score=45.32  Aligned_cols=64  Identities=11%  Similarity=0.275  Sum_probs=48.1

Q ss_pred             HHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522          479 DLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV  542 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  542 (590)
                      ..|.+.+++++|++.++++ ...| ++..|......+...|++++|.+.++++++..|+++.....
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            4677788888888888887 4444 45566777778888888888888888888888866655443

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.05  E-value=0.37  Score=47.40  Aligned_cols=182  Identities=13%  Similarity=0.089  Sum_probs=121.5

Q ss_pred             cchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522          367 YDAAVGNALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF  443 (590)
Q Consensus       367 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  443 (590)
                      ++...|...+....+.|+.+.+.-.|+...-|-.   ..|-..+.-....|+.+-|..++....+--++-.+.+-..-..
T Consensus       295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~  374 (577)
T KOG1258|consen  295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR  374 (577)
T ss_pred             HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence            3566777778888888999999999988875422   2444444444455888888888877665433323333222223


Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHH---HHHHhc-CCCCCHhHHHHHH-----HHH
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAY---NMIRQM-NIKPTASLWSAIL-----GAC  513 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~-~~~p~~~~~~~l~-----~~~  513 (590)
                      -+...|+++.|..+++.+.+.+   |+ ...-..-+....+.|+.+.+.   +++... ...-+......+.     -.+
T Consensus       375 f~e~~~n~~~A~~~lq~i~~e~---pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~  451 (577)
T KOG1258|consen  375 FEESNGNFDDAKVILQRIESEY---PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRY  451 (577)
T ss_pred             HHHhhccHHHHHHHHHHHHhhC---CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHH
Confidence            3456789999999999999862   55 333334455667888888887   444444 2222333333222     223


Q ss_pred             HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522          514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG  551 (590)
Q Consensus       514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  551 (590)
                      ...++.+.|..++.++.+..|.+...|..+......++
T Consensus       452 ~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  452 KIREDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             HHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            45689999999999999999999999999988877776

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.03  E-value=0.018  Score=45.38  Aligned_cols=89  Identities=12%  Similarity=0.072  Sum_probs=56.6

Q ss_pred             HHHhcCChHHHHHHHHhc----CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch---HHHHHHHHHhcC
Q 038522          480 LFARRGQLESAYNMIRQM----NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN---YVVLSNIYTAAG  551 (590)
Q Consensus       480 ~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~~g  551 (590)
                      ...+.|++++|.+.|+.+    +..| ....--.++.+|.+.++++.|...+++.++++|.++.+   ++..+.++..+.
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~~~   98 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYEQD   98 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHh
Confidence            345667777777777666    1112 23445566777788888888888888888888866554   444455555554


Q ss_pred             C---------------hHHHHHHHHHhhhcCC
Q 038522          552 A---------------WDNARKTRKLMEERSL  568 (590)
Q Consensus       552 ~---------------~~~A~~~~~~~~~~~~  568 (590)
                      .               ..+|..-|+.+.++-+
T Consensus        99 ~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP  130 (142)
T PF13512_consen   99 EGSLQSFFRSDRDPTPARQAFRDFEQLVRRYP  130 (142)
T ss_pred             hhHHhhhcccccCcHHHHHHHHHHHHHHHHCc
Confidence            4               5667777777666543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.01  E-value=0.022  Score=44.03  Aligned_cols=92  Identities=16%  Similarity=0.164  Sum_probs=62.3

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHcCCCCc--HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHH
Q 038522          406 LIAGYAKHGYGHEAIELYKKMKHEGMVPN--DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFA  482 (590)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~  482 (590)
                      +..++-..|+.++|+.+|++....|....  ...+..+..++...|++++|..+++.....+.-.+ +......+..++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            34566678888888888888888876654  34566677778888888888888888876521111 1222223345667


Q ss_pred             hcCChHHHHHHHHhc
Q 038522          483 RRGQLESAYNMIRQM  497 (590)
Q Consensus       483 ~~g~~~~A~~~~~~~  497 (590)
                      ..|+.++|++.+-..
T Consensus        87 ~~gr~~eAl~~~l~~  101 (120)
T PF12688_consen   87 NLGRPKEALEWLLEA  101 (120)
T ss_pred             HCCCHHHHHHHHHHH
Confidence            788888888877543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.99  E-value=0.00093  Score=47.71  Aligned_cols=62  Identities=10%  Similarity=0.098  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHhcCCchHHHHHHHHHhcC----CCC---CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          504 SLWSAILGACSIYGNTSLGELAARNLFDM----EPE---KSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .+++.+...|...|++++|+..+++++++    .++   -..++..++.+|...|++++|++++++..+
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            45677777777888888888888887732    222   245688888999999999999998887654

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.97  E-value=0.029  Score=50.07  Aligned_cols=102  Identities=15%  Similarity=0.104  Sum_probs=79.6

Q ss_pred             CcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhc-CCCC-CHhHHH
Q 038522          433 PNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG---QLESAYNMIRQM-NIKP-TASLWS  507 (590)
Q Consensus       433 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~p-~~~~~~  507 (590)
                      -|...|..|...|...|+.+.|...|.+..+-  ..++...+..+..++....   ...++.++|+++ ...| |..+..
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~  231 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRL--AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS  231 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence            37888999999999999999999999998864  2334666677777665432   456889999988 5555 555666


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCCCC
Q 038522          508 AILGACSIYGNTSLGELAARNLFDMEPEK  536 (590)
Q Consensus       508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  536 (590)
                      .|...+...|++.+|...|+.+++..|.+
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~  260 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD  260 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence            77788889999999999999999988844

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.92  E-value=0.53  Score=47.08  Aligned_cols=152  Identities=10%  Similarity=0.025  Sum_probs=75.1

Q ss_pred             CchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCC-----CcchHHHHHHHHHhcCCchHHHHH
Q 038522          145 RWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERK-----DVVSWNAMIGGLAMQGFNDDSFWL  219 (590)
Q Consensus       145 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~  219 (590)
                      |.+++|+++|-+|-...         .-+..+.+.|+|-...++++.-...     -..+|+.+...+.....|++|.+.
T Consensus       748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y  818 (1189)
T KOG2041|consen  748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY  818 (1189)
T ss_pred             cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666666665544332         2344455556666655555543221     123456666666666666666665


Q ss_pred             HHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCcc
Q 038522          220 FRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDII  299 (590)
Q Consensus       220 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  299 (590)
                      |..-...         ...+.++.+..++++.+.+-     ..++.+....-.+.+++.+.|.-++|.+.|-+...|.  
T Consensus       819 Y~~~~~~---------e~~~ecly~le~f~~LE~la-----~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pk--  882 (1189)
T KOG2041|consen  819 YSYCGDT---------ENQIECLYRLELFGELEVLA-----RTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPK--  882 (1189)
T ss_pred             HHhccch---------HhHHHHHHHHHhhhhHHHHH-----HhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcH--
Confidence            5442211         01222222222222222221     1235555666667777777777777776665543331  


Q ss_pred             chHHHHHHHHhcCCChHHHHHHHHHH
Q 038522          300 SCTALISGFARDDNHSKEAFDLFKDM  325 (590)
Q Consensus       300 ~~~~l~~~~~~~~~~~~~a~~~~~~~  325 (590)
                         ..+.+|...++ +.+|.++-+..
T Consensus       883 ---aAv~tCv~LnQ-W~~avelaq~~  904 (1189)
T KOG2041|consen  883 ---AAVHTCVELNQ-WGEAVELAQRF  904 (1189)
T ss_pred             ---HHHHHHHHHHH-HHHHHHHHHhc
Confidence               23344455555 66666655543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.89  E-value=0.56  Score=46.92  Aligned_cols=19  Identities=26%  Similarity=0.240  Sum_probs=10.5

Q ss_pred             HHHhcCCchHHHHHHHHHH
Q 038522          409 GYAKHGYGHEAIELYKKMK  427 (590)
Q Consensus       409 ~~~~~~~~~~a~~~~~~m~  427 (590)
                      .+.+.|+.-+|-+++.+|.
T Consensus       932 ~~Rka~~~~daarll~qma  950 (1189)
T KOG2041|consen  932 KDRKAGRHLDAARLLSQMA  950 (1189)
T ss_pred             HhhhcccchhHHHHHHHHh
Confidence            3445555555556655554

>PRK11906 transcriptional regulator; Provisional

Probab=96.88  E-value=0.02  Score=54.57  Aligned_cols=143  Identities=11%  Similarity=0.069  Sum_probs=89.4

Q ss_pred             chHHHHHHHHHHH-cCCCCc-HHHHHHHHHHhhcc---------CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc
Q 038522          416 GHEAIELYKKMKH-EGMVPN-DVTFLSLLFACSHT---------GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR  484 (590)
Q Consensus       416 ~~~a~~~~~~m~~-~g~~p~-~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  484 (590)
                      .+.|+.+|.+... ..+.|+ ...|..+..++...         ....+|.+.-++..+.  -+.|......+..++.-.
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--TTVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhh
Confidence            4567888888772 224664 45666666555432         1234455555555532  123466666666667777


Q ss_pred             CChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH--HHHHHHhcCChHHHHHHH
Q 038522          485 GQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV--LSNIYTAAGAWDNARKTR  560 (590)
Q Consensus       485 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~--l~~~~~~~g~~~~A~~~~  560 (590)
                      ++++.|..+|++. .+.|| ..+|......+...|+.+.|.+.++++++++|....+-..  .+..|+.. ..++|++++
T Consensus       352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~  430 (458)
T PRK11906        352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY  430 (458)
T ss_pred             cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence            7788888888887 55665 4556666666777888888888888888888855444333  23345544 456666665


Q ss_pred             H
Q 038522          561 K  561 (590)
Q Consensus       561 ~  561 (590)
                      -
T Consensus       431 ~  431 (458)
T PRK11906        431 Y  431 (458)
T ss_pred             h
Confidence            4

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.044  Score=47.51  Aligned_cols=127  Identities=13%  Similarity=0.034  Sum_probs=72.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC-----CCCchHHHHHHHH
Q 038522          100 TAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGR-----FVENLFVKSALLD  174 (590)
Q Consensus       100 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~  174 (590)
                      +.++..+.-.|.+.-...++.+.++...+.++.....+.+.--+.||.+.|...++...+..     +.-+..+......
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            44555555666666666666666665545555556666666666677777777776555432     2222223333334


Q ss_pred             HHHhcCChHHHHHHHhccCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 038522          175 LYAKCGWIEDAWILFERIERK---DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQ  226 (590)
Q Consensus       175 ~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  226 (590)
                      .|.-.+++..|...|.++...   |+..-|.-.-+..-.|+..+|++.++.|+..
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             heecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            445555666666666666542   3344444444444556666677777666654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.81  E-value=0.47  Score=44.87  Aligned_cols=78  Identities=12%  Similarity=0.154  Sum_probs=59.1

Q ss_pred             CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCc---cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH
Q 038522           62 ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNV---VSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSAL  138 (590)
Q Consensus        62 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  138 (590)
                      +.|..+|-.|+..|..+|..++..+++++|..|-+   .+|..-+++-...+++.....+|.+-......  ...|..-+
T Consensus        39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l~--ldLW~lYl  116 (660)
T COG5107          39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSLN--LDLWMLYL  116 (660)
T ss_pred             chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhcc--HhHHHHHH
Confidence            66888899999999999999999999999888643   46777777777778888888888888776543  44555444


Q ss_pred             HHH
Q 038522          139 RAC  141 (590)
Q Consensus       139 ~~~  141 (590)
                      .-.
T Consensus       117 ~YI  119 (660)
T COG5107         117 EYI  119 (660)
T ss_pred             HHH
Confidence            433

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.81  E-value=0.11  Score=40.01  Aligned_cols=140  Identities=15%  Similarity=0.089  Sum_probs=83.0

Q ss_pred             HhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 038522          411 AKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESA  490 (590)
Q Consensus       411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  490 (590)
                      .-.|..++..++..+....   .+..-++.++--....-+-+...++++.+-+-+.+.              .+|+....
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV   75 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV   75 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence            3457777778888877753   233444444443444444455566666664432221              23444444


Q ss_pred             HHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          491 YNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       491 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      ..-+-.++  .+...+...+.+...+|+-++-.+++..+.+.+..+|.+...++.+|.+.|+..++.+++.++-++|++
T Consensus        76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            44443332  233445566677788999999999999998655558999999999999999999999999999999875

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=96.78  E-value=0.48  Score=44.36  Aligned_cols=50  Identities=12%  Similarity=-0.067  Sum_probs=31.5

Q ss_pred             HHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHh
Q 038522           38 QFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAF   88 (590)
Q Consensus        38 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~   88 (590)
                      ..+.+..++..|+..+...++.. +.+..-|..-...+...|++++|..-.
T Consensus        57 n~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~da  106 (486)
T KOG0550|consen   57 NAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDA  106 (486)
T ss_pred             chHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccch
Confidence            34556667777777777777765 334555666666666667777665444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.74  E-value=0.022  Score=52.90  Aligned_cols=94  Identities=10%  Similarity=0.080  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          472 EHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      .++..+.-+|.+.+++.+|+....+. .. ++|....-.=..++...|+++.|+..|+++++++|.|..+-..|..+-.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k  337 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK  337 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            35666778889999999999998887 33 44666777777899999999999999999999999999998888887776


Q ss_pred             cCChHHH-HHHHHHhhh
Q 038522          550 AGAWDNA-RKTRKLMEE  565 (590)
Q Consensus       550 ~g~~~~A-~~~~~~~~~  565 (590)
                      ...+.+. .++|..|-.
T Consensus       338 ~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  338 IREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence            6665554 788888866

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.68  E-value=0.14  Score=44.55  Aligned_cols=53  Identities=15%  Similarity=0.191  Sum_probs=25.8

Q ss_pred             ccccCChHHHHHHhhhC----CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHh
Q 038522            7 NFKTGQLKQALKFSLSC----PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITN   59 (590)
Q Consensus         7 ~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~   59 (590)
                      +...|++++|+..|+.+    ++.+-...+...++.++.+.|++..|...++..++.
T Consensus        15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34455555555555555    222222234444455555555555555555555554

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.65  E-value=0.0061  Score=49.90  Aligned_cols=69  Identities=13%  Similarity=0.136  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh-----cCCccCCC
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE-----RSLRKNPG  573 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~  573 (590)
                      ....++..+...|+++.|...+++++..+|.+...|..++.+|...|+..+|.++++++.+     -|+.|+|.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~  137 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE  137 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence            4556677788899999999999999999999999999999999999999999999998854     47766653

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.65  E-value=0.072  Score=46.36  Aligned_cols=51  Identities=14%  Similarity=0.120  Sum_probs=35.2

Q ss_pred             CCchHHHHHHHHHhcCCCCCcch-----------------HHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          517 GNTSLGELAARNLFDMEPEKSVN-----------------YVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       517 ~~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      +...+|...++.+++..|+++-.                 -..++..|.+.|.+..|..-++.+.+.-
T Consensus       104 ~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y  171 (203)
T PF13525_consen  104 TSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY  171 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence            34456677777777777755443                 2246888999999999999999988753

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.63  E-value=0.013  Score=54.01  Aligned_cols=129  Identities=12%  Similarity=-0.011  Sum_probs=66.4

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHH----HHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhh---cCC-CCChh
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKM----KHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINK---YRI-LPRAE  472 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m----~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~-~~~~~  472 (590)
                      .|..|...|.-.|+++.|+..-+.=    .+-|-+. ....+..+..++.-.|+++.|.+.|+....-   .|- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            3444444445556666665443321    1222111 2344555666666666666666666554321   011 11233


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc--------CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM--------NIKPTASLWSAILGACSIYGNTSLGELAARNLF  530 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  530 (590)
                      +..+|...|.-..++++|+.++.+-        ...-...++.+|..++...|..++|+.+.+..+
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            4445566666666666776666543        111123455666667777777777776666655

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.62  E-value=1  Score=46.22  Aligned_cols=55  Identities=9%  Similarity=0.189  Sum_probs=42.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 038522          373 NALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMK  427 (590)
Q Consensus       373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  427 (590)
                      .-++..+.+..+++.+..+.+...+.++..|..++..+++.+..+.-.+...+..
T Consensus       709 ~dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl  763 (933)
T KOG2114|consen  709 QDLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVL  763 (933)
T ss_pred             HHHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence            4466777888888999988888888889999999999999887666555544433

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.60  E-value=0.024  Score=43.25  Aligned_cols=88  Identities=17%  Similarity=0.203  Sum_probs=60.2

Q ss_pred             HHHhcCChHHHHHHHHhc-C-CCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCCh
Q 038522          480 LFARRGQLESAYNMIRQM-N-IKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV----NYVVLSNIYTAAGAW  553 (590)
Q Consensus       480 ~~~~~g~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----~~~~l~~~~~~~g~~  553 (590)
                      ++...|+.+.|++.|.+. . .+..+..||.-..++.-+|+.++|+.-+++++++.-+...    +|..-+..|...|+-
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence            456677777777777766 2 3345667777777777778888888888887776532222    255566777777888


Q ss_pred             HHHHHHHHHhhhcC
Q 038522          554 DNARKTRKLMEERS  567 (590)
Q Consensus       554 ~~A~~~~~~~~~~~  567 (590)
                      +.|+.-|+..-+-|
T Consensus       132 d~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  132 DAARADFEAAAQLG  145 (175)
T ss_pred             HHHHHhHHHHHHhC
Confidence            88877777665544

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.54  E-value=0.0037  Score=44.54  Aligned_cols=59  Identities=10%  Similarity=0.189  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc-----CCC---CC-HhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM-----NIK---PT-ASLWSAILGACSIYGNTSLGELAARNLFD  531 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~-----~~~---p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  531 (590)
                      +++.+...|...|++++|++.|++.     ...   |+ ..++..+...+...|++++|++.++++++
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4445555555555555555555544     111   11 33455566666666666666666666553

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.011  Score=54.68  Aligned_cols=66  Identities=9%  Similarity=0.052  Sum_probs=60.5

Q ss_pred             hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      .++..+...|.+.+++..|++...++++++|+|..+++.-+.+|...|+++.|+..|+++.+..+.
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~  323 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPS  323 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence            466778888899999999999999999999999999999999999999999999999999885543

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.49  E-value=0.038  Score=43.23  Aligned_cols=98  Identities=13%  Similarity=0.146  Sum_probs=65.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhcc
Q 038522          369 AAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT  448 (590)
Q Consensus       369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  448 (590)
                      ..++..++.++++.|+++....+++..-..++..-       ...+.         --......|+..+..+++.+|+..
T Consensus         2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~-------~~~~~---------~~~~spl~Pt~~lL~AIv~sf~~n   65 (126)
T PF12921_consen    2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGK-------KKEGD---------YPPSSPLYPTSRLLIAIVHSFGYN   65 (126)
T ss_pred             hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCc-------cccCc---------cCCCCCCCCCHHHHHHHHHHHHhc
Confidence            44566677777777777777666665432211100       00000         112334678888999999999989


Q ss_pred             CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 038522          449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA  482 (590)
Q Consensus       449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  482 (590)
                      |++..|.++++.+.+.++++.+..+|..|++-..
T Consensus        66 ~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   66 GDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             ccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            9999999999999988888888888888877543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.46  E-value=0.76  Score=43.45  Aligned_cols=163  Identities=13%  Similarity=0.129  Sum_probs=104.6

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCC--C-cHHHHHHHHHHhhc---cCChHHHHHHHHHHHhhcCCCCChhHHHH
Q 038522          403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMV--P-NDVTFLSLLFACSH---TGLTCEGWELFTDMINKYRILPRAEHFSC  476 (590)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  476 (590)
                      ...++-+|....+++..+++.+.+......  + ....--...-++.+   .|+.++|++++..+... .-.++++++..
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL  222 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence            345666799999999999999999864111  1 22222233445556   89999999999996655 56778888888


Q ss_pred             HHHHHHh---------cCChHHHHHHHHhc-CCCCCHhH---HHHHHHHHHhcC-CchHHHHHH---HHHh-c---CCC-
Q 038522          477 VVDLFAR---------RGQLESAYNMIRQM-NIKPTASL---WSAILGACSIYG-NTSLGELAA---RNLF-D---MEP-  534 (590)
Q Consensus       477 l~~~~~~---------~g~~~~A~~~~~~~-~~~p~~~~---~~~l~~~~~~~~-~~~~a~~~~---~~~~-~---~~p-  534 (590)
                      +.+.|-.         ....++|.+.|.+. .+.|+..+   +..|+....... .-.+..++.   ..+. +   ..+ 
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~  302 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM  302 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence            8877632         22477899999888 55665432   233333222111 111222222   1111 1   112 


Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          535 EKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       535 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      .+-..+.+++.+..-.|++++|.+..+.|.+.
T Consensus       303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            35556778999999999999999999999865

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.38  E-value=0.028  Score=49.50  Aligned_cols=99  Identities=15%  Similarity=0.157  Sum_probs=47.2

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc----CCCC-CHhHHHHHH
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM----NIKP-TASLWSAIL  510 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p-~~~~~~~l~  510 (590)
                      .|+.-+. +.+.|++..|...|....+.+.-.+ ....+-.|..++...|++++|..+|..+    +..| -+..+--+.
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            3444443 3344556666666666665431100 1223334555555555555555555544    1111 223344444


Q ss_pred             HHHHhcCCchHHHHHHHHHhcCCCCC
Q 038522          511 GACSIYGNTSLGELAARNLFDMEPEK  536 (590)
Q Consensus       511 ~~~~~~~~~~~a~~~~~~~~~~~p~~  536 (590)
                      ....+.|+.+.|...|+++.+..|..
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~YP~t  248 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRYPGT  248 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHCCCC
Confidence            44445555555555555555555533

>PRK11619 lytic murein transglycosylase; Provisional

Probab=96.34  E-value=1.6  Score=45.31  Aligned_cols=116  Identities=10%  Similarity=0.007  Sum_probs=61.9

Q ss_pred             cCCchHHHHHHHHHHHc-CCCCcH--HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 038522          413 HGYGHEAIELYKKMKHE-GMVPND--VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES  489 (590)
Q Consensus       413 ~~~~~~a~~~~~~m~~~-g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  489 (590)
                      ..+.+.|...+...... ++.+..  .....+.......+...++...++.....   ..+......-+....+.++++.
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~  330 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG  330 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence            44567777777776433 233322  22333332233322245555555554322   2344445555555567778877


Q ss_pred             HHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522          490 AYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFD  531 (590)
Q Consensus       490 A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  531 (590)
                      +...+..|  ...-...-.--+.+++...|+.++|...|+++..
T Consensus       331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~  374 (644)
T PRK11619        331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ  374 (644)
T ss_pred             HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            77777777  1121222233455555567888888888877643

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.30  E-value=0.24  Score=43.44  Aligned_cols=54  Identities=11%  Similarity=0.050  Sum_probs=29.5

Q ss_pred             cccCChHHHHHHhhhC-CCCCC---CcccHHHHHHHhhcccchhHHHHHHHHHHHhcC
Q 038522            8 FKTGQLKQALKFSLSC-PDTLL---DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGY   61 (590)
Q Consensus         8 ~~~g~~~~a~~~~~~~-~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~   61 (590)
                      .+.|++++|.+.|+.+ ...+-   ...+...++.++.+.++++.|....++.++..+
T Consensus        45 L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP  102 (254)
T COG4105          45 LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP  102 (254)
T ss_pred             HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence            3456666666666666 22222   223444455555666666666666666665543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.20  E-value=0.052  Score=47.88  Aligned_cols=92  Identities=15%  Similarity=0.193  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCC----cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHH
Q 038522          403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVP----NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCV  477 (590)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l  477 (590)
                      |+.-+.. .+.|++..|...|...++.  -|    .+..+-.|.+++...|++++|..+|..+.+.++-.|. ++.+-.|
T Consensus       145 Y~~A~~~-~ksgdy~~A~~~F~~fi~~--YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         145 YNAALDL-YKSGDYAEAEQAFQAFIKK--YPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             HHHHHHH-HHcCCHHHHHHHHHHHHHc--CCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            4444433 3445566666666666654  22    1233444566666666666666666666665544444 3556666


Q ss_pred             HHHHHhcCChHHHHHHHHhc
Q 038522          478 VDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       478 ~~~~~~~g~~~~A~~~~~~~  497 (590)
                      .....+.|+.++|...|++.
T Consensus       222 g~~~~~l~~~d~A~atl~qv  241 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQV  241 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHH
Confidence            66666666666666666665

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.75  Score=39.83  Aligned_cols=88  Identities=13%  Similarity=0.112  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc-------CCCCCH-hHHHHHHHHHHhcCCchHHHHHHHHHhc----CCCCCcchH
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM-------NIKPTA-SLWSAILGACSIYGNTSLGELAARNLFD----MEPEKSVNY  540 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~~  540 (590)
                      .+..+.+.+.+..++++|-..+.+-       ..-|+. ..+-..+-.+....++..|+..++.-.+    ..|++..+.
T Consensus       152 l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~l  231 (308)
T KOG1585|consen  152 LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSL  231 (308)
T ss_pred             HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHH
Confidence            3445556777778887776666554       112222 2344455566677788899988888654    346677778


Q ss_pred             HHHHHHHHhcCChHHHHHHHH
Q 038522          541 VVLSNIYTAAGAWDNARKTRK  561 (590)
Q Consensus       541 ~~l~~~~~~~g~~~~A~~~~~  561 (590)
                      ..|+.+| ..|+.+++.+++.
T Consensus       232 enLL~ay-d~gD~E~~~kvl~  251 (308)
T KOG1585|consen  232 ENLLTAY-DEGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHHh-ccCCHHHHHHHHc
Confidence            8887766 6788888777654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.13  E-value=1.8  Score=43.93  Aligned_cols=113  Identities=12%  Similarity=0.092  Sum_probs=78.5

Q ss_pred             CcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHH
Q 038522          433 PNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGA  512 (590)
Q Consensus       433 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~  512 (590)
                      ....+.+--+.-+...|+..+|.++-.+++     -||...|..-+.++...+++++-+++-+...   .+..|.-+..+
T Consensus       682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PFVe~  753 (829)
T KOG2280|consen  682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPFVEA  753 (829)
T ss_pred             cccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhHHHH
Confidence            333444445556667788888887776665     5788888878888888888888777776653   24556677788


Q ss_pred             HHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038522          513 CSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRK  561 (590)
Q Consensus       513 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  561 (590)
                      |.+.|+.++|....-+.-.+        .-...+|.+.|++.+|.++--
T Consensus       754 c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  754 CLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             HHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHH
Confidence            88888888887766543322        256777888888888876543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=96.10  E-value=0.045  Score=52.19  Aligned_cols=62  Identities=10%  Similarity=0.064  Sum_probs=43.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHh----HHHHHHHHHHhcCCchHHHHHHHHHhcC
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTAS----LWSAILGACSIYGNTSLGELAARNLFDM  532 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~  532 (590)
                      ...++.+..+|...|++++|+..|++. .+.|+..    +|..+..+|...|++++|++.++++++.
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            556666777777777777777777775 5556533    4677777777777777777777777776

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.09  E-value=0.29  Score=48.70  Aligned_cols=159  Identities=11%  Similarity=0.046  Sum_probs=103.6

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH------HHHHHHHHHhhc----cCChHHHHHHHHHHHhhcCCCCChhH
Q 038522          404 TSLIAGYAKHGYGHEAIELYKKMKHEGMVPND------VTFLSLLFACSH----TGLTCEGWELFTDMINKYRILPRAEH  473 (590)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~  473 (590)
                      ..++....-.|+-+.+++.+.+..+.+---.+      ..|..++..+..    ..+.+.|.++++.+.++   -|+...
T Consensus       192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~l  268 (468)
T PF10300_consen  192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSAL  268 (468)
T ss_pred             HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcHH
Confidence            34444445556666666666665542211111      123333333332    44677888999998865   567655


Q ss_pred             HHHH-HHHHHhcCChHHHHHHHHhc-CCCC-----CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH-HHH
Q 038522          474 FSCV-VDLFARRGQLESAYNMIRQM-NIKP-----TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV-LSN  545 (590)
Q Consensus       474 ~~~l-~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~  545 (590)
                      |... .+.+...|++++|++.|+++ ....     ....+-.+...+....++++|...+.++.+.+.-+...|.. .+-
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~  348 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAA  348 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            5443 45567789999999999876 1111     22345556677888999999999999999988765555554 466


Q ss_pred             HHHhcCCh-------HHHHHHHHHhhh
Q 038522          546 IYTAAGAW-------DNARKTRKLMEE  565 (590)
Q Consensus       546 ~~~~~g~~-------~~A~~~~~~~~~  565 (590)
                      ++...|+.       ++|.+++.++..
T Consensus       349 c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  349 CLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            77788999       889999988765

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.07  E-value=0.92  Score=39.91  Aligned_cols=57  Identities=23%  Similarity=0.216  Sum_probs=44.6

Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCCCcc---hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          509 ILGACSIYGNTSLGELAARNLFDMEPEKSV---NYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +.+-|.+.|.+..|..-++.+++.-|+.+.   ++..+..+|...|-.++|.+.-+-+..
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~  232 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA  232 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence            445678899999999999999988775444   466677889999999999987765544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.06  E-value=1  Score=40.21  Aligned_cols=194  Identities=17%  Similarity=0.128  Sum_probs=100.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH-
Q 038522          370 AVGNALIDMYAKSGEIADANRAFDEMGD-----KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF-  443 (590)
Q Consensus       370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-  443 (590)
                      ..+......+...+.+..+...+.....     .....+......+...+++..+...+.........+ ......... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence            3444455555555556555555554431     222344444455555555666666666655532222 111111122 


Q ss_pred             HhhccCChHHHHHHHHHHHhhcCC--CCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC--HhHHHHHHHHHHhcCC
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRI--LPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT--ASLWSAILGACSIYGN  518 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~~~~  518 (590)
                      .+...|+++.+...+.+.... ..  ......+......+...++.+++...+.+. ...++  ...+..+...+...++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (291)
T COG0457         139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK  217 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence            455666666666666666421 10  012223333333345566666666666665 22232  4455555566666666


Q ss_pred             chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          519 TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       519 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ++.+...+..+....|.....+..++..+...|.++++...++...+
T Consensus       218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66666666666666665445555555555555556666666665544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.03  E-value=0.092  Score=47.33  Aligned_cols=160  Identities=14%  Similarity=0.019  Sum_probs=118.3

Q ss_pred             HhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHH----HHHHHHhcCC
Q 038522          411 AKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSC----VVDLFARRGQ  486 (590)
Q Consensus       411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~  486 (590)
                      ..+|+..+|-..|+++.+. .+.|...+...-.+|...|+.+.-...++++..++  .|+...|..    +.-++..+|-
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHhhHHHhcc
Confidence            4578888999999999885 55578888888889999999999999999988643  455544443    3344568899


Q ss_pred             hHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC-C---cchHHHHHHHHHhcCChHHHHHHH
Q 038522          487 LESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPE-K---SVNYVVLSNIYTAAGAWDNARKTR  560 (590)
Q Consensus       487 ~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~---~~~~~~l~~~~~~~g~~~~A~~~~  560 (590)
                      +++|.+.-++. .+.| |.....+........|++.++.++..+-...=-+ .   .-.|-..+..+...+.++.|+++|
T Consensus       191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            99999999888 5444 5566667777777889999999988876533221 1   123556777888889999999999


Q ss_pred             HHhhhcCCccCCC
Q 038522          561 KLMEERSLRKNPG  573 (590)
Q Consensus       561 ~~~~~~~~~~~~~  573 (590)
                      +.=.-..+.++.+
T Consensus       271 D~ei~k~l~k~Da  283 (491)
T KOG2610|consen  271 DREIWKRLEKDDA  283 (491)
T ss_pred             HHHHHHHhhccch
Confidence            8765555555554

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.00  E-value=2.3  Score=43.88  Aligned_cols=146  Identities=9%  Similarity=-0.023  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHhccCCCCCccchH---HHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 038522           67 LSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWT---AMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACAR  143 (590)
Q Consensus        67 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  143 (590)
                      ....-+..+.+...++-|..+-+.-..+....-+   .-.+.+.+.|++++|...|-+-+.. +.|+     .++.-+..
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLd  409 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLD  409 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcC
Confidence            3445566667777777777776654432221111   2223455778888888777666532 3332     35555666


Q ss_pred             cCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCc-chHHHHHHHHHhcCCchHHHHH
Q 038522          144 MRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDV-VSWNAMIGGLAMQGFNDDSFWL  219 (590)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~  219 (590)
                      ...+..-..+++.+.+.|+.. ....+.|+.+|.+.++.++-.++.+...+... .-....+..+.+.+-.++|.-+
T Consensus       410 aq~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~L  485 (933)
T KOG2114|consen  410 AQRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELL  485 (933)
T ss_pred             HHHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHH
Confidence            666777777888888887543 34455678888888888887777766552111 1133344444444444444433

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.95  E-value=0.25  Score=44.66  Aligned_cols=157  Identities=8%  Similarity=-0.001  Sum_probs=108.3

Q ss_pred             hcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHH----HHHHHhhccCChHH
Q 038522          381 KSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFL----SLLFACSHTGLTCE  453 (590)
Q Consensus       381 ~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~~~~  453 (590)
                      -.|+..+|-..++++.+   .|..++.--=.+|...|+.+.-...+++.... ..|+...|.    ++.-++...|-+++
T Consensus       115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d  193 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD  193 (491)
T ss_pred             ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence            34777788778888774   36667777778899999999988899888764 355554433    23334568899999


Q ss_pred             HHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhcC--CCC----CHhHHHHHHHHHHhcCCchHHHHHH
Q 038522          454 GWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQMN--IKP----TASLWSAILGACSIYGNTSLGELAA  526 (590)
Q Consensus       454 a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~p----~~~~~~~l~~~~~~~~~~~~a~~~~  526 (590)
                      |.+.-++..+   +.| |.-...++...+-..|++.++.+++.+-.  -+.    -...|-...--+...+.++.|+++|
T Consensus       194 AEk~A~ralq---iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  194 AEKQADRALQ---INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             HHHHHHhhcc---CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            9999888874   333 45556677777888899999999988761  111    0112222333345678999999999


Q ss_pred             HHHh--cCCCCCcchHH
Q 038522          527 RNLF--DMEPEKSVNYV  541 (590)
Q Consensus       527 ~~~~--~~~p~~~~~~~  541 (590)
                      .+=+  +++.+|..+..
T Consensus       271 D~ei~k~l~k~Da~a~~  287 (491)
T KOG2610|consen  271 DREIWKRLEKDDAVARD  287 (491)
T ss_pred             HHHHHHHhhccchhhhh
Confidence            8765  56666666654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.90  E-value=0.51  Score=42.25  Aligned_cols=120  Identities=10%  Similarity=0.071  Sum_probs=74.5

Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHH---HHHHHHhcCCch
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSA---ILGACSIYGNTS  520 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~---l~~~~~~~~~~~  520 (590)
                      .....|++.+|...|+.....  .+-+....-.++++|...|+.+.|..++..++..-...-+..   -+..+.+.....
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            355667777888877777754  122345566677788888888888888887733332222222   122222333333


Q ss_pred             HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          521 LGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       521 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      ... .+++-...+|+|...-..|+..|...|+.++|.+.+-.+.++
T Consensus       221 ~~~-~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~  265 (304)
T COG3118         221 EIQ-DLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRR  265 (304)
T ss_pred             CHH-HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            222 234445567888888888888888888888888877777664

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.83  E-value=0.72  Score=37.27  Aligned_cols=126  Identities=10%  Similarity=0.000  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 038522          403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA  482 (590)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  482 (590)
                      ...++..+...+.+.....+++.+...+ ..++..++.++..|++.+ .....+.++.       .++.......++.|.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~   80 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCE   80 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHH
Confidence            3445555555666667777777666654 245556666666666542 2333333331       112233344566666


Q ss_pred             hcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhc-CCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          483 RRGQLESAYNMIRQMNIKPTASLWSAILGACSIY-GNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       483 ~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      +.+-++++.-++.++|.      +...+..+... ++++.|.+.+++     +.++..|..++..+.
T Consensus        81 ~~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l  136 (140)
T smart00299       81 KAKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL  136 (140)
T ss_pred             HcCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence            66666677777666642      12222222233 666666666664     224455555555443

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.76  E-value=0.08  Score=46.51  Aligned_cols=109  Identities=11%  Similarity=0.151  Sum_probs=79.2

Q ss_pred             HHHhccCC--CCCccchHHHHHHHHhc-----CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccC------------
Q 038522           85 RKAFDRMP--ERNVVSWTAMISGYAQN-----GYDENALLVFSAMLRSGVRANQFTYSSALRACARMR------------  145 (590)
Q Consensus        85 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~------------  145 (590)
                      ++.|....  ++|-.+|-..+..+...     +..+-....++.|.+-|+.-|..+|+.||..+-+..            
T Consensus        54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~  133 (406)
T KOG3941|consen   54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL  133 (406)
T ss_pred             hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence            44555554  46777777777766533     456667778899999999999999999998764432            


Q ss_pred             ----chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh-HHHHHHHhccC
Q 038522          146 ----WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI-EDAWILFERIE  193 (590)
Q Consensus       146 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~  193 (590)
                          +-+-+..++++|..+|+.||..+-..|++++.+.+-. .+..++.-.|+
T Consensus       134 HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  134 HYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             hCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                3445678999999999999999999999999887653 33344443333

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=95.73  E-value=0.07  Score=43.61  Aligned_cols=56  Identities=16%  Similarity=0.199  Sum_probs=26.6

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHH
Q 038522          405 SLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDM  461 (590)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  461 (590)
                      .++..+...|++++|..+++++.... +-|...|..++.++...|+..+|.+.|+++
T Consensus        67 ~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   67 RLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            34444445555555555555555431 224445555555555555555555555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=95.70  E-value=0.034  Score=45.03  Aligned_cols=90  Identities=6%  Similarity=-0.138  Sum_probs=67.7

Q ss_pred             HHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCC---CCCccchHHHHHHHHhcC
Q 038522           34 MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMP---ERNVVSWTAMISGYAQNG  110 (590)
Q Consensus        34 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~li~~~~~~~  110 (590)
                      ....--+...|++++|..+|+-+...+ +-+..-+..|..++-..+++++|...|....   ..|+..+-....++...|
T Consensus        41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         41 YAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhC
Confidence            334445567789999999999888776 3456667778888888889999988887532   245555556678888889


Q ss_pred             ChHHHHHHHHHHHH
Q 038522          111 YDENALLVFSAMLR  124 (590)
Q Consensus       111 ~~~~a~~~~~~m~~  124 (590)
                      +.+.|...|+...+
T Consensus       120 ~~~~A~~~f~~a~~  133 (165)
T PRK15331        120 KAAKARQCFELVNE  133 (165)
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999988877

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=95.69  E-value=0.39  Score=38.13  Aligned_cols=20  Identities=10%  Similarity=-0.017  Sum_probs=15.3

Q ss_pred             chHHHHHHHHHhcCCCCCcc
Q 038522          519 TSLGELAARNLFDMEPEKSV  538 (590)
Q Consensus       519 ~~~a~~~~~~~~~~~p~~~~  538 (590)
                      ...|...|+++++.-|++.-
T Consensus       115 ~~~A~~~f~~lv~~yP~S~y  134 (142)
T PF13512_consen  115 ARQAFRDFEQLVRRYPNSEY  134 (142)
T ss_pred             HHHHHHHHHHHHHHCcCChh
Confidence            56788888888888886543

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.64  E-value=0.44  Score=38.77  Aligned_cols=51  Identities=16%  Similarity=0.036  Sum_probs=23.0

Q ss_pred             hcCCchHHHHHHHHHh-cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          515 IYGNTSLGELAARNLF-DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       515 ~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .+|-+++.....+.+. +.+|-...+-..|+.+-.+.|++.+|.++|+.+..
T Consensus       144 D~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         144 DNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             ccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            4444444444444333 23333344444444444455555555555544433

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.58  E-value=0.21  Score=44.04  Aligned_cols=125  Identities=11%  Similarity=0.058  Sum_probs=86.2

Q ss_pred             HHhhhCCCCCCCcccHHHHHHHhhcc-----cchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCC
Q 038522           18 KFSLSCPDTLLDPSTYMSLLQFCIDK-----KAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMP   92 (590)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~   92 (590)
                      +.|+.+.+..-|..+|...+..+...     +.++.-...++.|.+-|+..|..+|+.|++.+-+-.-.           
T Consensus        55 ~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi-----------  123 (406)
T KOG3941|consen   55 KQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI-----------  123 (406)
T ss_pred             hhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc-----------
Confidence            34444455566777888888777643     56777888889999999999999999999887542211           


Q ss_pred             CCCccchHHHHHHHHhc-CChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCch-hhHHHHHHHHH
Q 038522           93 ERNVVSWTAMISGYAQN-GYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWL-QGGRMIQGSIQ  158 (590)
Q Consensus        93 ~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~  158 (590)
                           .-|.+-..+..- .+-+-+++++++|...|+.||..+-..++.++.+.+.. .+...++-.|-
T Consensus       124 -----P~nvfQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  124 -----PQNVFQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             -----cHHHHHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence                 111122222222 23356899999999999999999999999999887753 33344444443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.58  E-value=0.28  Score=47.16  Aligned_cols=57  Identities=11%  Similarity=-0.013  Sum_probs=30.1

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCC--CcchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522          507 SAILGACSIYGNTSLGELAARNLFDMEPE--KSVNYVVLSNIYTAAGAWDNARKTRKLM  563 (590)
Q Consensus       507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (590)
                      ..+...+.+.|+.++|++.++++++..|.  +...+..|+.++...+++.++..++.+-
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            33444445555555555555555554442  3334555555555555555555555554

The molecular function of this protein is uncertain.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=95.57  E-value=0.037  Score=42.29  Aligned_cols=59  Identities=14%  Similarity=0.010  Sum_probs=54.0

Q ss_pred             HHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh-cCCc
Q 038522          511 GACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE-RSLR  569 (590)
Q Consensus       511 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~  569 (590)
                      .+....|+.+.|++.|.+++.+-|.++++|+.-+.++.-+|+.++|+.-+++..+ .|.+
T Consensus        51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            4566889999999999999999999999999999999999999999999999888 5544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.44  E-value=2.5  Score=40.27  Aligned_cols=466  Identities=11%  Similarity=0.100  Sum_probs=216.1

Q ss_pred             HHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-
Q 038522           15 QALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE-   93 (590)
Q Consensus        15 ~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-   93 (590)
                      +-+.+=+++...|.|...|-.|++-+..++..++..+++++|..- ++.-+.+|..-+..-....++...+.+|.+-.. 
T Consensus        27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k  105 (660)
T COG5107          27 DELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK  105 (660)
T ss_pred             hHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh
Confidence            334555666778888899999999999999999999999999753 344566777777777777899999998887543 


Q ss_pred             -CCccchHHHHHHHHhcCChH------HHHHHHHHHHH-cCCCCCHhh-HHHHHHH---HhccCc------hhhHHHHHH
Q 038522           94 -RNVVSWTAMISGYAQNGYDE------NALLVFSAMLR-SGVRANQFT-YSSALRA---CARMRW------LQGGRMIQG  155 (590)
Q Consensus        94 -~~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~-~~~~p~~~~-~~~ll~~---~~~~~~------~~~a~~~~~  155 (590)
                       -+...|..-+..-.+.++.-      ...+.|+-... .++.|-... |+..+.-   .-..|.      ++..+..+.
T Consensus       106 ~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~  185 (660)
T COG5107         106 SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYM  185 (660)
T ss_pred             hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence             45666777666544433211      11222222221 233333222 2222221   111222      222222333


Q ss_pred             HHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHH--cCCC---
Q 038522          156 SIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER-KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR--QGMK---  229 (590)
Q Consensus       156 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~~~~---  229 (590)
                      .++...                 -|++++-++-|+.... -|..|-.-++.  -..--+-.|...+++...  .|++   
T Consensus       186 ral~tP-----------------~~nleklW~dy~~fE~e~N~~TarKfvg--e~sp~ym~ar~~yqe~~nlt~Gl~v~~  246 (660)
T COG5107         186 RALQTP-----------------MGNLEKLWKDYENFELELNKITARKFVG--ETSPIYMSARQRYQEIQNLTRGLSVKN  246 (660)
T ss_pred             HHHcCc-----------------cccHHHHHHHHHHHHHHHHHHHHHHHhc--ccCHHHHHHHHHHHHHHHHhccccccC
Confidence            332211                 1222222222222110 00000000000  000001223333333321  1221   


Q ss_pred             -CChhhHHHHHH-----------Hhcc-----CCC--hhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHH
Q 038522          230 -PDCFTLGSILR-----------ASVG-----GIE--LMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLY  290 (590)
Q Consensus       230 -p~~~~~~~ll~-----------~~~~-----~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  290 (590)
                       -+..|++.+-+           -=..     .|+  .+...-++++.... +.-...+|--....+...++-+.|+...
T Consensus       247 ~~~~Rt~nK~~r~s~S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv  325 (660)
T COG5107         247 PINLRTANKAARTSDSNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTV  325 (660)
T ss_pred             chhhhhhccccccccchhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHH
Confidence             12222222111           0000     000  11111122222211 1223333333334445566777777766


Q ss_pred             HhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh---chhhhHhHHHHHHHHHHhCCCc
Q 038522          291 RSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICA---NVASLNLGRQIHAFAFKYQSSY  367 (590)
Q Consensus       291 ~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~---~~~~~~~a~~~~~~~~~~~~~~  367 (590)
                      ....+-.+. ....+.-|-...++.+.....|+...+.=    ..-| ..+.+-+   ..|+.+.-.++   +.++. ..
T Consensus       326 ~rg~~~sps-L~~~lse~yel~nd~e~v~~~fdk~~q~L----~r~y-s~~~s~~~s~~D~N~e~~~El---l~kr~-~k  395 (660)
T COG5107         326 ERGIEMSPS-LTMFLSEYYELVNDEEAVYGCFDKCTQDL----KRKY-SMGESESASKVDNNFEYSKEL---LLKRI-NK  395 (660)
T ss_pred             HhcccCCCc-hheeHHHHHhhcccHHHHhhhHHHHHHHH----HHHH-hhhhhhhhccccCCccccHHH---HHHHH-hh
Confidence            655322211 22222333222221333333333322100    0000 0000000   01112111111   11111 11


Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD-----KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLL  442 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll  442 (590)
                      -..++.+.++.-.+..-++.|+.+|-++.+     +++..+++++.-++ .|++.-|..+|+--... +..++.-....+
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~-f~d~~~y~~kyl  473 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK-FPDSTLYKEKYL  473 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh-CCCchHHHHHHH
Confidence            234556667777777778888888877764     46667777777665 45667777777764443 222333334555


Q ss_pred             HHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHH
Q 038522          443 FACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGAC  513 (590)
Q Consensus       443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~  513 (590)
                      .-+...++-+.|..+|+....+..-.--...|..+|+.-..-|++..+..+=+++ ..-|...+...+..-|
T Consensus       474 ~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~pQen~~evF~Sry  545 (660)
T COG5107         474 LFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELVPQENLIEVFTSRY  545 (660)
T ss_pred             HHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHcCcHhHHHHHHHHH
Confidence            5666777788888888865543111112567777777777778877777666666 3344444444444333

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.43  E-value=0.28  Score=38.47  Aligned_cols=76  Identities=14%  Similarity=0.273  Sum_probs=37.9

Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHH--------------hhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc----
Q 038522          436 VTFLSLLFACSHTGLTCEGWELFTDMI--------------NKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM----  497 (590)
Q Consensus       436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----  497 (590)
                      .++..++.++++.|+.+....+++..-              ......|+..+..+++.+|+..|++..|+++++..    
T Consensus         3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y   82 (126)
T PF12921_consen    3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY   82 (126)
T ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence            444555555555555555555544332              11134455555555555555555555555555444    


Q ss_pred             CCCCCHhHHHHHHH
Q 038522          498 NIKPTASLWSAILG  511 (590)
Q Consensus       498 ~~~p~~~~~~~l~~  511 (590)
                      +++-+...|..|+.
T Consensus        83 ~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   83 PIPIPKEFWRRLLE   96 (126)
T ss_pred             CCCCCHHHHHHHHH
Confidence            44444555555553

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.41  E-value=1.2  Score=43.01  Aligned_cols=97  Identities=13%  Similarity=0.223  Sum_probs=66.7

Q ss_pred             HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcC-C-CCCH--hHHHHHHHHHH
Q 038522          439 LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMN-I-KPTA--SLWSAILGACS  514 (590)
Q Consensus       439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~p~~--~~~~~l~~~~~  514 (590)
                      ..+..++-+.|+.++|++.++++.+.+....+......|+.++...+.+.++..++.+.. + -|..  .+|+..+-.+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            456667778999999999999998753322235577789999999999999999998882 2 2332  34554443333


Q ss_pred             hcCC---------------chHHHHHHHHHhcCCCC
Q 038522          515 IYGN---------------TSLGELAARNLFDMEPE  535 (590)
Q Consensus       515 ~~~~---------------~~~a~~~~~~~~~~~p~  535 (590)
                      ..++               -..|.+...++.+.+|.
T Consensus       343 av~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  343 AVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             hhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence            3332               12356788888888873

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=95.38  E-value=2.7  Score=40.37  Aligned_cols=149  Identities=9%  Similarity=-0.009  Sum_probs=79.9

Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC---cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhH
Q 038522          399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP---NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR--AEH  473 (590)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~  473 (590)
                      ...+|..++..+.+.|+++.|...+.++...+..+   .+.....-+...-..|+..+|...++...+. ....+  ...
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~  223 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS  223 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence            44567777888888888888888888877643211   2333333445566677888888888777762 11111  111


Q ss_pred             HHHHHHHHHhcCChHHHHHH-HHhcCCCCCHhHHHHHHHHHHh------cCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522          474 FSCVVDLFARRGQLESAYNM-IRQMNIKPTASLWSAILGACSI------YGNTSLGELAARNLFDMEPEKSVNYVVLSNI  546 (590)
Q Consensus       474 ~~~l~~~~~~~g~~~~A~~~-~~~~~~~p~~~~~~~l~~~~~~------~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  546 (590)
                      ...+...+..  ..+..... ........-...+..+..-+..      .++.+.+...|+.+.++.|.....|..++..
T Consensus       224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~  301 (352)
T PF02259_consen  224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF  301 (352)
T ss_pred             HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence            1111111000  00000000 0000000001122222222223      3788899999999999999888888888877


Q ss_pred             HHhc
Q 038522          547 YTAA  550 (590)
Q Consensus       547 ~~~~  550 (590)
                      +...
T Consensus       302 ~~~~  305 (352)
T PF02259_consen  302 NDKL  305 (352)
T ss_pred             HHHH
Confidence            6654

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.37  E-value=0.028  Score=32.06  Aligned_cols=29  Identities=17%  Similarity=0.229  Sum_probs=13.8

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          506 WSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      |..+...+...|++++|++.++++++++|
T Consensus         4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    4 WYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            34444444455555555555555555544

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=95.33  E-value=1  Score=43.38  Aligned_cols=146  Identities=12%  Similarity=0.037  Sum_probs=87.4

Q ss_pred             ChHHHHHHHHhcC---CCC---cchHHHHHHHHHhc---------CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhcc
Q 038522          384 EIADANRAFDEMG---DKN---VISWTSLIAGYAKH---------GYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT  448 (590)
Q Consensus       384 ~~~~A~~~~~~~~---~~~---~~~~~~l~~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  448 (590)
                      ..+.|..+|.+..   .-|   ...|..+..++...         ....+|.++.++..+.+ +-|+.....+..+....
T Consensus       273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~  351 (458)
T PRK11906        273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS  351 (458)
T ss_pred             HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence            3567777888776   333   23444444433321         12345666666666653 34677777777766777


Q ss_pred             CChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHh---HHHHHHHHHHhcCCchHHH
Q 038522          449 GLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTAS---LWSAILGACSIYGNTSLGE  523 (590)
Q Consensus       449 ~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~---~~~~l~~~~~~~~~~~~a~  523 (590)
                      ++++.|...|++..   .+.|| ...|........-.|+.++|.+.+++. ...|...   .....+..|+ ..-.+.|+
T Consensus       352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~-~~~~~~~~  427 (458)
T PRK11906        352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYV-PNPLKNNI  427 (458)
T ss_pred             cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHc-CCchhhhH
Confidence            77888888888887   45666 445555555666788888888888885 6566432   2222233443 34566677


Q ss_pred             HHHHHHhcCCC
Q 038522          524 LAARNLFDMEP  534 (590)
Q Consensus       524 ~~~~~~~~~~p  534 (590)
                      .+|-+-.+...
T Consensus       428 ~~~~~~~~~~~  438 (458)
T PRK11906        428 KLYYKETESES  438 (458)
T ss_pred             HHHhhcccccc
Confidence            76665444443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.29  E-value=0.022  Score=32.52  Aligned_cols=30  Identities=10%  Similarity=0.112  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      +|..+...+...|++++|+..++++++++|
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            445555555555555555555555555555

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.22  E-value=0.65  Score=45.57  Aligned_cols=157  Identities=12%  Similarity=0.086  Sum_probs=93.2

Q ss_pred             HHHHhcCChHHHHHHHH--HHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCC
Q 038522          104 SGYAQNGYDENALLVFS--AMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGW  181 (590)
Q Consensus       104 ~~~~~~~~~~~a~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  181 (590)
                      +...-.++++.+.++.+  ++.. .+ | ....+.+++-+-+.|..+.|.++-..-.            .-.+...+.|+
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~-~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~  333 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLP-NI-P-KDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN  333 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred             HHHHHcCChhhhhhhhhhhhhcc-cC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence            44556677777766664  1111 12 2 4446677777778888888777654321            23455677888


Q ss_pred             hHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHh
Q 038522          182 IEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKL  261 (590)
Q Consensus       182 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  261 (590)
                      ++.|.++.++..  +...|..|.....++|+++-|.+.|.+..+         +..++-.+...|+.+...++.+.....
T Consensus       334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~  402 (443)
T PF04053_consen  334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER  402 (443)
T ss_dssp             HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence            888888887765  556889999999999999999888877543         455555666777777777776666655


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522          262 GLESSNKLTGSLIDVYAKYGSIRSAYQLYRS  292 (590)
Q Consensus       262 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  292 (590)
                      |-      ++....++.-.|+.++..+++.+
T Consensus       403 ~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  403 GD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             cC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            41      23333444555666666665544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=1.6  Score=39.28  Aligned_cols=167  Identities=13%  Similarity=0.053  Sum_probs=103.5

Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcC
Q 038522          387 DANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYR  466 (590)
Q Consensus       387 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  466 (590)
                      ...++++++..+....--.-.......|++.+|...|+...... +-+......+..++...|+.+.|..++..+-.. .
T Consensus       121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~  198 (304)
T COG3118         121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A  198 (304)
T ss_pred             HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence            33445555544322222222345566788888888888887752 224455667778888888888888888877543 1


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC--CCCcchHHHH
Q 038522          467 ILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKP-TASLWSAILGACSIYGNTSLGELAARNLFDME--PEKSVNYVVL  543 (590)
Q Consensus       467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l  543 (590)
                      -.........-+..+.+.....+...+-++....| |...-..+...+...|+.+.|.+.+-.+++.+  -.+...-..+
T Consensus       199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l  278 (304)
T COG3118         199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL  278 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence            11111222334555666666666666666664455 55566677777888888888888877777543  3566677777


Q ss_pred             HHHHHhcCChHH
Q 038522          544 SNIYTAAGAWDN  555 (590)
Q Consensus       544 ~~~~~~~g~~~~  555 (590)
                      ..++...|.-+.
T Consensus       279 le~f~~~g~~Dp  290 (304)
T COG3118         279 LELFEAFGPADP  290 (304)
T ss_pred             HHHHHhcCCCCH
Confidence            777777764443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.00  E-value=0.43  Score=43.75  Aligned_cols=222  Identities=8%  Similarity=-0.047  Sum_probs=97.1

Q ss_pred             HhcCCChHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHh--CCCcc---hhHHHHHHHHHHh
Q 038522          309 ARDDNHSKEAFDLFKDMILKK--MGIDDVILCLMLNICANVASLNLGRQIHAFAFKY--QSSYD---AAVGNALIDMYAK  381 (590)
Q Consensus       309 ~~~~~~~~~a~~~~~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~  381 (590)
                      ....+ .++|+..+.+-.++-  ...-..++..+..+.+..|.++++...--.-++.  ....+   -..|..+.+++.+
T Consensus        17 y~s~~-~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   17 YQSNQ-TEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             hcCch-HHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445 777777777665431  1112245556666667777766665542211110  01111   1122222233333


Q ss_pred             cCChHHHHHHHHhcCC-CC-------cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC---CC--cHHHHHHHHHHhhcc
Q 038522          382 SGEIADANRAFDEMGD-KN-------VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM---VP--NDVTFLSLLFACSHT  448 (590)
Q Consensus       382 ~~~~~~A~~~~~~~~~-~~-------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~  448 (590)
                      .-++.+++.+-..-.. |.       -....++..++...+.++++++.|+...+-.-   .|  ....+..|-..|...
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            3333333332221110 10       01223344555555566666666665543211   11  224455555566666


Q ss_pred             CChHHHHHHHHHHHh---hcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhc-------CCCC-CHhHHHHHHHH
Q 038522          449 GLTCEGWELFTDMIN---KYRILPRAEHFS-----CVVDLFARRGQLESAYNMIRQM-------NIKP-TASLWSAILGA  512 (590)
Q Consensus       449 ~~~~~a~~~~~~~~~---~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~  512 (590)
                      .++++|.-+..+..+   .+++..-..-|.     .+.-++...|..-.|.+..++.       |..| .......+...
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            666666555444322   112221112222     2223444455555555544443       2222 22334445555


Q ss_pred             HHhcCCchHHHHHHHHHhc
Q 038522          513 CSIYGNTSLGELAARNLFD  531 (590)
Q Consensus       513 ~~~~~~~~~a~~~~~~~~~  531 (590)
                      |...|+.+.|..-|+.+..
T Consensus       256 yR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHhcccHhHHHHHHHHHHH
Confidence            6666666666666665553

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=95.00  E-value=3.8  Score=39.79  Aligned_cols=79  Identities=19%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             HHHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHH-HHhcCChHHHHHHhccC
Q 038522           14 KQALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIF-YAKVGDVLSARKAFDRM   91 (590)
Q Consensus        14 ~~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~~   91 (590)
                      ..-..+|+.+ ...+-|+..|...+..|-+.+.+.+...+|..|...+ +.++..|-.-... |-....++.|..+|..-
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrg  166 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRG  166 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHH
Confidence            3445677777 5566699999999999999988999999999998875 4455555443333 33344599999988876


Q ss_pred             CC
Q 038522           92 PE   93 (590)
Q Consensus        92 ~~   93 (590)
                      .+
T Consensus       167 LR  168 (568)
T KOG2396|consen  167 LR  168 (568)
T ss_pred             hh
Confidence            65

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=94.94  E-value=0.17  Score=42.08  Aligned_cols=101  Identities=10%  Similarity=0.066  Sum_probs=69.9

Q ss_pred             HHhhccCChHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHh
Q 038522          443 FACSHTGLTCEGWELFTDMINKYRILPR-----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGACSI  515 (590)
Q Consensus       443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~  515 (590)
                      .-+...|++++|..-|......  .++.     ...|..-..++.+.+.++.|++-..+. .+.|. ......-..+|.+
T Consensus       103 N~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek  180 (271)
T KOG4234|consen  103 NELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEK  180 (271)
T ss_pred             HHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHh
Confidence            4577889999999999998864  2222     223444445677888889888888776 55553 2233333456778


Q ss_pred             cCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522          516 YGNTSLGELAARNLFDMEPEKSVNYVVLSN  545 (590)
Q Consensus       516 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  545 (590)
                      ...++.|+.-|+++++.+|....+-...++
T Consensus       181 ~ek~eealeDyKki~E~dPs~~ear~~i~r  210 (271)
T KOG4234|consen  181 MEKYEEALEDYKKILESDPSRREAREAIAR  210 (271)
T ss_pred             hhhHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            889999999999999999966655444444

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.77  E-value=3.4  Score=38.23  Aligned_cols=54  Identities=22%  Similarity=0.288  Sum_probs=26.6

Q ss_pred             HhhccCChHHHHHHHHHHHhhc---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          444 ACSHTGLTCEGWELFTDMINKY---RILPR-AEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                      ++...|....|.+..++..+-.   |-.+. ......+.+.|...|+.+.|..-|+.+
T Consensus       215 alR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A  272 (518)
T KOG1941|consen  215 ALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA  272 (518)
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence            4445555555555555543321   22221 233445556666666666665555543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=94.76  E-value=0.46  Score=46.64  Aligned_cols=156  Identities=15%  Similarity=0.068  Sum_probs=96.6

Q ss_pred             HHHhcCChHHHHHHHH--hcC-CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHH
Q 038522          378 MYAKSGEIADANRAFD--EMG-DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEG  454 (590)
Q Consensus       378 ~~~~~~~~~~A~~~~~--~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  454 (590)
                      ...-.++++++.++.+  ++. .-+..-.+.++.-+.+.|.++.|+++.+.-..            -.+...+.|+++.|
T Consensus       270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~A  337 (443)
T PF04053_consen  270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDIA  337 (443)
T ss_dssp             HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHHH
T ss_pred             HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHHH
Confidence            3445677777665554  221 11233466777777778888777766543221            12344577888888


Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          455 WELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      .++.+.       .++...|..|.+...+.|+++-|.+.|++.+      -+..|+-.|...|+.++-.++.+.+...+-
T Consensus       338 ~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~  404 (443)
T PF04053_consen  338 LEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD  404 (443)
T ss_dssp             HHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence            776532       3466788888888888999999988888875      356666677788888777777777665554


Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522          535 EKSVNYVVLSNIYTAAGAWDNARKTRKLM  563 (590)
Q Consensus       535 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (590)
                           ++....++.-.|+.++..++|.+.
T Consensus       405 -----~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  405 -----INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             -----HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             -----HHHHHHHHHHcCCHHHHHHHHHHc
Confidence                 555566677788998888888754

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=94.72  E-value=2.9  Score=37.12  Aligned_cols=197  Identities=17%  Similarity=0.129  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHhchhhhHhHHHHHHHHHHh-CCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCc-chHHHHHH-H
Q 038522          335 VILCLMLNICANVASLNLGRQIHAFAFKY-QSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--KNV-ISWTSLIA-G  409 (590)
Q Consensus       335 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~l~~-~  409 (590)
                      ..+......+...+....+...+...... ........+......+...+++..+...+.....  ++. ........ .
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence            33344444444445555555444444432 2233444555556666666777777777777664  222 22333333 6


Q ss_pred             HHhcCCchHHHHHHHHHHHcCCCC----cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhc
Q 038522          410 YAKHGYGHEAIELYKKMKHEGMVP----NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARR  484 (590)
Q Consensus       410 ~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  484 (590)
                      +...|+++.|...+++...  ..|    ....+......+...++.+.+...+......  ... ....+..+...+...
T Consensus       140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~  215 (291)
T COG0457         140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALKL--NPDDDAEALLNLGLLYLKL  215 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh--CcccchHHHHHhhHHHHHc
Confidence            7888999999999998865  233    3334444444466788999999999999864  222 366777888888899


Q ss_pred             CChHHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          485 GQLESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       485 g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                      ++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus       216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (291)
T COG0457         216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD  268 (291)
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence            9999999999888 44554 445555555555677899999999999999995

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.71  E-value=0.063  Score=32.90  Aligned_cols=33  Identities=15%  Similarity=0.187  Sum_probs=29.2

Q ss_pred             cchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          537 SVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       537 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      |.++..++.+|...|++++|.++++++.+..+.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~   33 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD   33 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            357889999999999999999999999987653

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.67  E-value=1.6  Score=33.90  Aligned_cols=64  Identities=14%  Similarity=0.019  Sum_probs=43.7

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCC
Q 038522          199 SWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGL  263 (590)
Q Consensus       199 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  263 (590)
                      ..+..+..+..+|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+..+.|+
T Consensus        88 ~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   88 YVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            34556677788888888888888876533 67777778888888888888888888888887774

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.60  E-value=0.069  Score=30.97  Aligned_cols=26  Identities=19%  Similarity=0.241  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522          539 NYVVLSNIYTAAGAWDNARKTRKLME  564 (590)
Q Consensus       539 ~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (590)
                      +|..|+.+|.+.|++++|++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46789999999999999999999854

>PRK09687 putative lyase; Provisional

Probab=94.57  E-value=3.7  Score=37.73  Aligned_cols=73  Identities=7%  Similarity=-0.015  Sum_probs=30.6

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC  445 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  445 (590)
                      +..+....+.++++.|+.+..-.+.+.+..++  .....+.++...|.. +|+..+.++.+.  .||...-...+.+|
T Consensus       205 ~~~VR~~A~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~  277 (280)
T PRK09687        205 NEEIRIEAIIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKL  277 (280)
T ss_pred             ChHHHHHHHHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHH
Confidence            33333444445555554332222223322222  122344455555543 455555555542  33444444444433

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.53  E-value=2.3  Score=35.13  Aligned_cols=134  Identities=9%  Similarity=0.038  Sum_probs=82.4

Q ss_pred             HHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcC--ChHHHHHHHhccC
Q 038522          116 LLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCG--WIEDAWILFERIE  193 (590)
Q Consensus       116 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~  193 (590)
                      .++++.+.+.+++|+...+..++..+.+.|.+....    .++..++-+|.......+-.+....  -..-|...+.++.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~   89 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG   89 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence            456667777888899999999999998888765544    3444455555444333332222211  1233445555544


Q ss_pred             CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHh
Q 038522          194 RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKL  261 (590)
Q Consensus       194 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  261 (590)
                          ..+..++..+...|++-+|+++.+....    .+......++.+..+.+|...-..+++-..+.
T Consensus        90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence                2466777888889999999988877532    22233355666776777766666666655543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=94.43  E-value=0.53  Score=46.95  Aligned_cols=143  Identities=17%  Similarity=0.173  Sum_probs=101.0

Q ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChh-----HHHHHHHHHH----hcCChHHH
Q 038522          420 IELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAE-----HFSCVVDLFA----RRGQLESA  490 (590)
Q Consensus       420 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l~~~~~----~~g~~~~A  490 (590)
                      ..+|+-+... ++|   .+..+++...-.|+-+.+++.+.+..+..++.-...     .|...+..+.    .....+.|
T Consensus       177 ~G~f~L~lSl-LPp---~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a  252 (468)
T PF10300_consen  177 FGLFNLVLSL-LPP---KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEA  252 (468)
T ss_pred             HHHHHHHHHh-CCH---HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHH
Confidence            4556666654 444   345567777778999999999988776533332221     2333333333    24577889


Q ss_pred             HHHHHhc-CCCCCHhHHHHHH-HHHHhcCCchHHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522          491 YNMIRQM-NIKPTASLWSAIL-GACSIYGNTSLGELAARNLFDMEP----EKSVNYVVLSNIYTAAGAWDNARKTRKLME  564 (590)
Q Consensus       491 ~~~~~~~-~~~p~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (590)
                      .++++.+ ..-|+...|.... +.+...|+.+.|++.++++.....    -....+.-+++++..+++|++|.+.+..+.
T Consensus       253 ~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~  332 (468)
T PF10300_consen  253 EELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLL  332 (468)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHH
Confidence            9999999 5567766664443 567789999999999998885332    345568889999999999999999999998


Q ss_pred             hc
Q 038522          565 ER  566 (590)
Q Consensus       565 ~~  566 (590)
                      +.
T Consensus       333 ~~  334 (468)
T PF10300_consen  333 KE  334 (468)
T ss_pred             hc
Confidence            74

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.30  E-value=7.4  Score=40.09  Aligned_cols=71  Identities=15%  Similarity=0.142  Sum_probs=37.9

Q ss_pred             HHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCch
Q 038522          441 LLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTS  520 (590)
Q Consensus       441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~  520 (590)
                      .+..|.+.|-+++-.-++-+|-.         +..+|.-.-.+.+++++|.++.++-   -|...|..|+..+...-.+-
T Consensus       640 A~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKeq---~D~eLWe~LI~~~ldkPe~~  707 (846)
T KOG2066|consen  640 ALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKEQ---DDSELWEDLINYSLDKPEFI  707 (846)
T ss_pred             HHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHhc---CCHHHHHHHHHHhhcCcHHH
Confidence            34445555555555555544421         1223333334556666777766654   37778888887766544443


Q ss_pred             HHH
Q 038522          521 LGE  523 (590)
Q Consensus       521 ~a~  523 (590)
                      .++
T Consensus       708 ~~l  710 (846)
T KOG2066|consen  708 KAL  710 (846)
T ss_pred             HHH
Confidence            333

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=94.06  E-value=4.9  Score=37.06  Aligned_cols=22  Identities=14%  Similarity=0.080  Sum_probs=11.2

Q ss_pred             HHHHHHhcCChHHHHHHHHhcC
Q 038522          375 LIDMYAKSGEIADANRAFDEMG  396 (590)
Q Consensus       375 l~~~~~~~~~~~~A~~~~~~~~  396 (590)
                      -++.+.+.++.+.+.+++.+|.
T Consensus       127 ~l~il~~~~~~~~~~~~L~~mi  148 (278)
T PF08631_consen  127 KLEILLKSFDEEEYEEILMRMI  148 (278)
T ss_pred             HHHHHhccCChhHHHHHHHHHH
Confidence            3444444555555555555554

It is also involved in sporulation [].

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=94.03  E-value=16  Score=43.01  Aligned_cols=64  Identities=11%  Similarity=0.037  Sum_probs=53.6

Q ss_pred             HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          503 ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       503 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ..+|-...+.+...|+++.|...+-.+.+..+  +..+.-.+..+...|+...|..++++..+.+.
T Consensus      1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence            35788888888889999999988888887774  67888889999999999999999999886443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.01  E-value=0.24  Score=44.52  Aligned_cols=60  Identities=13%  Similarity=0.274  Sum_probs=35.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522          472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFD  531 (590)
Q Consensus       472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  531 (590)
                      .++..++..+...|+.+.+.+.++++ ...| +...|..++.+|.+.|+...|+..|+++.+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            34555666666666666666666665 3333 555666666666666666666666666553

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=94.01  E-value=2.9  Score=40.18  Aligned_cols=68  Identities=19%  Similarity=0.232  Sum_probs=57.2

Q ss_pred             CCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          501 PTASLWSAILGACSIYGNTSLGELAARNLFDMEP----EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       501 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ....+|..++..+.+.|+++.|...+.++.+.++    ..+.....-+..+...|+..+|...++...+..+
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~  215 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL  215 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence            4556789999999999999999999999998663    2466777789999999999999999998887433

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=93.99  E-value=2.7  Score=33.87  Aligned_cols=87  Identities=14%  Similarity=0.094  Sum_probs=54.6

Q ss_pred             cHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCC
Q 038522           32 TYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGY  111 (590)
Q Consensus        32 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~  111 (590)
                      ....++..+...+........++.+...+ ..++..++.++..|++.+ ..+....++.  ..+......+++.|.+.+-
T Consensus         9 ~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~--~~~~yd~~~~~~~c~~~~l   84 (140)
T smart00299        9 DVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN--KSNHYDIEKVGKLCEKAKL   84 (140)
T ss_pred             CHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh--ccccCCHHHHHHHHHHcCc
Confidence            34566677776777888888888887776 467778888888887653 3334444442  2233344446666666666


Q ss_pred             hHHHHHHHHHH
Q 038522          112 DENALLVFSAM  122 (590)
Q Consensus       112 ~~~a~~~~~~m  122 (590)
                      ++++.-++..+
T Consensus        85 ~~~~~~l~~k~   95 (140)
T smart00299       85 YEEAVELYKKD   95 (140)
T ss_pred             HHHHHHHHHhh
Confidence            66666666554

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.97  E-value=0.097  Score=29.71  Aligned_cols=31  Identities=16%  Similarity=0.150  Sum_probs=26.2

Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          538 VNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      .++..++.+|...|++++|++.+++..+..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p   32 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence            4688999999999999999999999877543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.82  E-value=4.6  Score=43.61  Aligned_cols=12  Identities=17%  Similarity=0.404  Sum_probs=6.9

Q ss_pred             hHHHHHHHHHHH
Q 038522          315 SKEAFDLFKDMI  326 (590)
Q Consensus       315 ~~~a~~~~~~~~  326 (590)
                      +.+=+-+++++.
T Consensus       867 PkEyLP~L~el~  878 (1265)
T KOG1920|consen  867 PKEYLPFLNELK  878 (1265)
T ss_pred             hHHHHHHHHHHh
Confidence            555555555554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=93.45  E-value=0.14  Score=29.12  Aligned_cols=31  Identities=23%  Similarity=0.228  Sum_probs=26.5

Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          538 VNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      .+|..++.+|...|++++|++.+++..+..+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            4789999999999999999999999887543

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.44  E-value=3.4  Score=33.65  Aligned_cols=65  Identities=18%  Similarity=0.251  Sum_probs=28.4

Q ss_pred             ccCChHHHHHHHHHHHhhcCCCCChhHHH-HHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHH
Q 038522          447 HTGLTCEGWELFTDMINKYRILPRAEHFS-CVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACS  514 (590)
Q Consensus       447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~  514 (590)
                      ..++.+++..+++.+.   -+.|...... .-...+.+.|++.+|..+|+++ .-.|....-..|+..|.
T Consensus        22 ~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL   88 (160)
T PF09613_consen   22 RLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCL   88 (160)
T ss_pred             ccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHH
Confidence            3445555555555554   2234322111 1122344555555555555555 22333333344444443

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.41  E-value=1.2  Score=37.34  Aligned_cols=23  Identities=9%  Similarity=0.075  Sum_probs=11.4

Q ss_pred             HHHHhcCCchHHHHHHHHHhcCC
Q 038522          511 GACSIYGNTSLGELAARNLFDME  533 (590)
Q Consensus       511 ~~~~~~~~~~~a~~~~~~~~~~~  533 (590)
                      ..+...|+-++|+..|+++++..
T Consensus       167 Dill~kg~k~~Ar~ay~kAl~~~  189 (207)
T COG2976         167 DILLAKGDKQEARAAYEKALESD  189 (207)
T ss_pred             hHHHHcCchHHHHHHHHHHHHcc
Confidence            34444555555555555555444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.39  E-value=0.52  Score=38.23  Aligned_cols=83  Identities=14%  Similarity=0.114  Sum_probs=59.2

Q ss_pred             hhHHHHHHHHH---HhcCChHHHHHHHHhc-CCCCCHhHHHHH-HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522          471 AEHFSCVVDLF---ARRGQLESAYNMIRQM-NIKPTASLWSAI-LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN  545 (590)
Q Consensus       471 ~~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  545 (590)
                      ..+.+.|++..   .+.++.+++..++..+ -..|.......+ ...+...|++.+|+.+++.+.+-.|..+..--.++.
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            34555565544   5678888888888888 556655444332 345678899999999999988888877777777777


Q ss_pred             HHHhcCCh
Q 038522          546 IYTAAGAW  553 (590)
Q Consensus       546 ~~~~~g~~  553 (590)
                      ++...|+.
T Consensus        87 CL~~~~D~   94 (160)
T PF09613_consen   87 CLYALGDP   94 (160)
T ss_pred             HHHHcCCh
Confidence            77777764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.13  E-value=3.3  Score=36.12  Aligned_cols=174  Identities=9%  Similarity=0.016  Sum_probs=89.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhcc
Q 038522          372 GNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT  448 (590)
Q Consensus       372 ~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  448 (590)
                      |..-..+|....++++|...+.+..   +.|...|.+       .+.++.|.-+.++|.+.  +.-...|..-...|...
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~lY~E~  104 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASELYVEC  104 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHh
Confidence            3344445556666666666555443   122222221       12334555555555541  22233455555667777


Q ss_pred             CChHHHHHHHHHHHhhc-CCCCCh--hHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHH
Q 038522          449 GLTCEGWELFTDMINKY-RILPRA--EHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELA  525 (590)
Q Consensus       449 ~~~~~a~~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~  525 (590)
                      |.++.|-..+++.-+.. +++|+.  ..|..-+......++...|.++            +....+.+.+.+.+++|-..
T Consensus       105 GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el------------~gk~sr~lVrl~kf~Eaa~a  172 (308)
T KOG1585|consen  105 GSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL------------YGKCSRVLVRLEKFTEAATA  172 (308)
T ss_pred             CCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH------------HHHhhhHhhhhHHhhHHHHH
Confidence            77777766666554321 233331  1222222222223333333333            33344556667777776665


Q ss_pred             HHHHh------cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          526 ARNLF------DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       526 ~~~~~------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      +.+-.      ...|..-..+...+.+|....++..|.+.++.-.+.
T Consensus       173 ~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  173 FLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC
Confidence            55543      222433445777777788888999999998875443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.05  E-value=16  Score=39.86  Aligned_cols=52  Identities=21%  Similarity=0.222  Sum_probs=25.4

Q ss_pred             CChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHh
Q 038522          180 GWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRAS  242 (590)
Q Consensus       180 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  242 (590)
                      +++++|+.-+.++.   ...|.-.++.--+.|.+.+|+.++        +|+...+..+..+|
T Consensus       894 ~ry~~AL~hLs~~~---~~~~~e~~n~I~kh~Ly~~aL~ly--------~~~~e~~k~i~~~y  945 (1265)
T KOG1920|consen  894 KRYEDALSHLSECG---ETYFPECKNYIKKHGLYDEALALY--------KPDSEKQKVIYEAY  945 (1265)
T ss_pred             HHHHHHHHHHHHcC---ccccHHHHHHHHhcccchhhhhee--------ccCHHHHHHHHHHH
Confidence            34455554444433   223333333334455555555554        56766666555443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=92.98  E-value=5.3  Score=34.18  Aligned_cols=160  Identities=15%  Similarity=0.097  Sum_probs=88.1

Q ss_pred             cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522          400 VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV  478 (590)
Q Consensus       400 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  478 (590)
                      +..||-|.--+...|+++.|.+.|+...+.  .|. ..+...-.-++.-.|++.-|.+-+...-......|=...|-.++
T Consensus        99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL--Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~  176 (297)
T COG4785          99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN  176 (297)
T ss_pred             HHHHHHHHHHHHhcccchHHHHHhhhHhcc--CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence            346777777777888888888888888774  442 22222222234456788888776666654312222222232222


Q ss_pred             HHHHhcCChHHHHHHHHh-c-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC-------cchHHHHHHHHHh
Q 038522          479 DLFARRGQLESAYNMIRQ-M-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEK-------SVNYVVLSNIYTA  549 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~-~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~  549 (590)
                         -+.-++.+|..-+.+ . +...+...|+.+  .+. .|+.. .+.+++++..-..++       ..+|..|+.-|..
T Consensus       177 ---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV--~~y-LgkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~  249 (297)
T COG4785         177 ---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIV--EFY-LGKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLS  249 (297)
T ss_pred             ---HhhCCHHHHHHHHHHHHHhccHhhhhHHHH--HHH-Hhhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhc
Confidence               234466676555433 3 433333333322  221 12221 122333333322222       4568889999999


Q ss_pred             cCChHHHHHHHHHhhhcCC
Q 038522          550 AGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       550 ~g~~~~A~~~~~~~~~~~~  568 (590)
                      .|+.++|..+|+.....++
T Consensus       250 ~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         250 LGDLDEATALFKLAVANNV  268 (297)
T ss_pred             cccHHHHHHHHHHHHHHhH
Confidence            9999999999987766544

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.82  E-value=0.64  Score=37.00  Aligned_cols=82  Identities=13%  Similarity=0.101  Sum_probs=48.7

Q ss_pred             hHHHHHHHHH---HhcCChHHHHHHHHhc-CCCCCHhHHHH-HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522          472 EHFSCVVDLF---ARRGQLESAYNMIRQM-NIKPTASLWSA-ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI  546 (590)
Q Consensus       472 ~~~~~l~~~~---~~~g~~~~A~~~~~~~-~~~p~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  546 (590)
                      ...+.|++..   ...++++++..++..+ -+.|+...... -...+...|++++|..+++.+.+-.|..+..--.++.+
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C   87 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC   87 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence            3444444433   3467777777777777 44454333222 22345577777777777777777776555555566666


Q ss_pred             HHhcCCh
Q 038522          547 YTAAGAW  553 (590)
Q Consensus       547 ~~~~g~~  553 (590)
                      +...|+.
T Consensus        88 L~al~Dp   94 (153)
T TIGR02561        88 LNAKGDA   94 (153)
T ss_pred             HHhcCCh
Confidence            6666653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.65  E-value=0.18  Score=28.33  Aligned_cols=29  Identities=21%  Similarity=0.240  Sum_probs=20.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          539 NYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       539 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      ++..++.+|...|++++|.+.++++.+.-
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~   30 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY   30 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            35567777777777777777777776654

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=92.54  E-value=0.14  Score=29.01  Aligned_cols=29  Identities=7%  Similarity=0.082  Sum_probs=13.4

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          506 WSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      |..+...|...|++++|...++++++++|
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~~~~   32 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALELNP   32 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            33344444444444444444444444444

...

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=92.52  E-value=3.3  Score=38.33  Aligned_cols=63  Identities=16%  Similarity=0.153  Sum_probs=37.6

Q ss_pred             hHHHHHHHHHHHcCCCCCh--hhHHHHHHHhccCCC--hhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 038522          214 DDSFWLFRSMMRQGMKPDC--FTLGSILRASVGGIE--LMKISQIHDLIIKLGLESSNKLTGSLIDV  276 (590)
Q Consensus       214 ~~a~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  276 (590)
                      +.+..+|+.+.+.|+..+.  ...+.++..+.....  ...+..+++.+.+.|+++....|..+.-.
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHH
Confidence            4566677777777765533  334444444333322  34677778888888888777776655433

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=92.42  E-value=0.28  Score=44.48  Aligned_cols=110  Identities=11%  Similarity=0.102  Sum_probs=74.7

Q ss_pred             HHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC-CCHhHHHHHHHHHHhcC
Q 038522          441 LLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIK-PTASLWSAILGACSIYG  517 (590)
Q Consensus       441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~  517 (590)
                      -.+-|.++|.+++|+.-|....   .+.| +..++..-..+|.+.+++..|..-...+ .+. .-...|..-+.+-...|
T Consensus       103 ~GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  103 RGNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             hhhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            3567889999999999998887   4456 7777777788899999888887766655 211 11234444444445668


Q ss_pred             CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHH
Q 038522          518 NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNAR  557 (590)
Q Consensus       518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~  557 (590)
                      +..+|.+-++.++++.|++..    |-..|..-....|+.
T Consensus       180 ~~~EAKkD~E~vL~LEP~~~E----LkK~~a~i~Sl~E~~  215 (536)
T KOG4648|consen  180 NNMEAKKDCETVLALEPKNIE----LKKSLARINSLRERK  215 (536)
T ss_pred             hHHHHHHhHHHHHhhCcccHH----HHHHHHHhcchHhhh
Confidence            889999999999999996433    333344444444443

>PRK09687 putative lyase; Provisional

Probab=92.39  E-value=8.9  Score=35.29  Aligned_cols=17  Identities=6%  Similarity=-0.011  Sum_probs=7.4

Q ss_pred             cHHHHHHHHHHhhccCC
Q 038522          434 NDVTFLSLLFACSHTGL  450 (590)
Q Consensus       434 ~~~~~~~ll~~~~~~~~  450 (590)
                      +...-...+.++.+.|+
T Consensus       205 ~~~VR~~A~~aLg~~~~  221 (280)
T PRK09687        205 NEEIRIEAIIGLALRKD  221 (280)
T ss_pred             ChHHHHHHHHHHHccCC
Confidence            44444444444444444

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=92.35  E-value=0.2  Score=26.43  Aligned_cols=24  Identities=21%  Similarity=0.209  Sum_probs=19.8

Q ss_pred             chHHHHHHHHHhcCChHHHHHHHH
Q 038522          538 VNYVVLSNIYTAAGAWDNARKTRK  561 (590)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~  561 (590)
                      .+...++.++...|+.++|..+++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            456788889999999999988875

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.30  E-value=0.15  Score=29.55  Aligned_cols=26  Identities=4%  Similarity=-0.144  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLF  530 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~  530 (590)
                      +|..|...|.+.|++++|++++++++
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            35667777777777777777777754

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=91.71  E-value=11  Score=34.92  Aligned_cols=63  Identities=13%  Similarity=0.152  Sum_probs=40.0

Q ss_pred             hHHHHHHHHHHHcCCCCc--HHHHHHHHHHhhccCC--hHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 038522          417 HEAIELYKKMKHEGMVPN--DVTFLSLLFACSHTGL--TCEGWELFTDMINKYRILPRAEHFSCVVDL  480 (590)
Q Consensus       417 ~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  480 (590)
                      +.+..+|+.+.+.|+..+  ......++..+.....  ...+.++++.+.+. ++++....|..+.-.
T Consensus       160 ~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~-~~kik~~~yp~lGlL  226 (297)
T PF13170_consen  160 ERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKN-GVKIKYMHYPTLGLL  226 (297)
T ss_pred             HHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHc-CCccccccccHHHHH
Confidence            456777888888787773  2444444443333222  34777888888887 888877776655443

>PRK12798 chemotaxis protein; Reviewed

Probab=91.38  E-value=14  Score=35.43  Aligned_cols=185  Identities=18%  Similarity=0.244  Sum_probs=120.7

Q ss_pred             cCChHHHHHHHHhcCC----CCcchHHHHHHHHH-hcCCchHHHHHHHHHHHcCCCCcH----HHHHHHHHHhhccCChH
Q 038522          382 SGEIADANRAFDEMGD----KNVISWTSLIAGYA-KHGYGHEAIELYKKMKHEGMVPND----VTFLSLLFACSHTGLTC  452 (590)
Q Consensus       382 ~~~~~~A~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~  452 (590)
                      .|+.++|.+.+..+..    +....|-.|+.+-. ...++..|+.+|+...-.  .|-.    .....-+-.....|+.+
T Consensus       125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~~  202 (421)
T PRK12798        125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDAD  202 (421)
T ss_pred             cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcHH
Confidence            5899999999998873    34456777776544 456899999999988753  5633    23344444567889999


Q ss_pred             HHHHHHHHHHhhcCCCCChhHHH-HHHHHHHhcC---ChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHH
Q 038522          453 EGWELFTDMINKYRILPRAEHFS-CVVDLFARRG---QLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARN  528 (590)
Q Consensus       453 ~a~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~  528 (590)
                      ++..+-.....+|...|-...|. .+...+.+.+   ..+.-..++..|.-.--...|-.+.+.....|+.+.|.-.-++
T Consensus       203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~  282 (421)
T PRK12798        203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER  282 (421)
T ss_pred             HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            98887777777665555544333 3333444433   3344455555553222345788888888899999999999999


Q ss_pred             HhcCCCCCcchHHHHHHHH-----HhcCChHHHHHHHHHhhhcCCc
Q 038522          529 LFDMEPEKSVNYVVLSNIY-----TAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       529 ~~~~~p~~~~~~~~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      +..+.+ ....-...+..|     .-..++++|.+.+..+-...+.
T Consensus       283 A~~L~~-~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~  327 (421)
T PRK12798        283 ALKLAD-PDSADAARARLYRGAALVASDDAESALEELSQIDRDKLS  327 (421)
T ss_pred             HHHhcc-CCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence            997764 222222233333     3446788888888777555443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.11  E-value=7.8  Score=32.07  Aligned_cols=39  Identities=18%  Similarity=0.203  Sum_probs=24.4

Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522          254 IHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRS  292 (590)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  292 (590)
                      +++-+.+.+++|+...+..+++.+.+.|++.....++.-
T Consensus        16 YirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~   54 (167)
T PF07035_consen   16 YIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY   54 (167)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh
Confidence            444445566777777777777777777666555555443

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.89  E-value=10  Score=33.01  Aligned_cols=17  Identities=6%  Similarity=-0.246  Sum_probs=10.6

Q ss_pred             hcCCchHHHHHHHHHhc
Q 038522          515 IYGNTSLGELAARNLFD  531 (590)
Q Consensus       515 ~~~~~~~a~~~~~~~~~  531 (590)
                      ..+++.+|+.+|+++..
T Consensus       166 ~leqY~~Ai~iyeqva~  182 (288)
T KOG1586|consen  166 QLEQYSKAIDIYEQVAR  182 (288)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            45666666666666654

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.87  E-value=0.44  Score=28.50  Aligned_cols=28  Identities=25%  Similarity=0.267  Sum_probs=23.8

Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          538 VNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .++..|+.+|...|++++|.+++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4678899999999999999999998876

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=90.80  E-value=18  Score=35.58  Aligned_cols=175  Identities=10%  Similarity=0.100  Sum_probs=111.0

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcC--CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMG--DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC  445 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  445 (590)
                      |.....+++..++...+..-...+..+|.  ..+...|..++.+|... ..++-..+|+++.+.  ..|......-+..+
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~--dfnDvv~~ReLa~~  141 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEY--DFNDVVIGRELADK  141 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHh--cchhHHHHHHHHHH
Confidence            44455566777777666666666666665  34566777888888877 567788888888875  33433333333334


Q ss_pred             hccCChHHHHHHHHHHHhhcCCCCC------hhHHHHHHHHHHhcCChHHHHHHHHhc----CCCCCHhHHHHHHHHHHh
Q 038522          446 SHTGLTCEGWELFTDMINKYRILPR------AEHFSCVVDLFARRGQLESAYNMIRQM----NIKPTASLWSAILGACSI  515 (590)
Q Consensus       446 ~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~~~~~~~l~~~~~~  515 (590)
                      ...++.+.+..+|.++..+  +.|.      ...|..+...  -..+.+..+.+..+.    |..--...+..+..-|..
T Consensus       142 yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         142 YEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            4447778888888877764  2221      2234444332  134566666666655    333334455556667778


Q ss_pred             cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          516 YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       516 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      ..++++|++++..+++.+..|..+...+..-+..
T Consensus       218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd  251 (711)
T COG1747         218 NENWTEAIRILKHILEHDEKDVWARKEIIENLRD  251 (711)
T ss_pred             ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence            8889999999998888888777776666655443

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=90.49  E-value=0.37  Score=27.43  Aligned_cols=32  Identities=19%  Similarity=0.146  Sum_probs=23.0

Q ss_pred             HHHHHHhcCCCchhHHHHHHHHHHhcCChHHHH
Q 038522           53 HAHIITNGYESNLHLSTKVIIFYAKVGDVLSAR   85 (590)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~   85 (590)
                      ++..++.. |.++..|+.+...|...|++++|+
T Consensus         2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence            34455554 567788888888888888888775

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.38  E-value=9  Score=31.57  Aligned_cols=118  Identities=11%  Similarity=0.071  Sum_probs=72.4

Q ss_pred             HhcCCchHHHHHHHHHHHcCCCCcHHH-HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH-----HHHHhc
Q 038522          411 AKHGYGHEAIELYKKMKHEGMVPNDVT-FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV-----DLFARR  484 (590)
Q Consensus       411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~~~  484 (590)
                      .+.+..++|+.-|..+.+.|...-+.. ...........|+-..|...|+++-..   .|.+....-+.     -.+...
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD~  145 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVDN  145 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhcc
Confidence            456677888888888877664432221 122233455677888888888888754   22222222221     234567


Q ss_pred             CChHHHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522          485 GQLESAYNMIRQM---NIKPTASLWSAILGACSIYGNTSLGELAARNLFD  531 (590)
Q Consensus       485 g~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  531 (590)
                      |-++....-.+-+   +.+-....-..|.-+..+.|++.+|...|+.+..
T Consensus       146 gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         146 GSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             ccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            7788877777776   2122233446666677788888888888888875

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=90.34  E-value=3  Score=35.11  Aligned_cols=93  Identities=13%  Similarity=0.109  Sum_probs=63.1

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCc-----HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHH
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVPN-----DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDL  480 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~  480 (590)
                      ..-+...|++++|..-|.+.+.. ++|.     ...|..-..++.+.+.++.|+.-..+.++   +.|+ ......-..+
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea  177 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA  177 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence            34577889999999999998885 3332     23344444567788888888888777774   3443 2233333457


Q ss_pred             HHhcCChHHHHHHHHhc-CCCCCH
Q 038522          481 FARRGQLESAYNMIRQM-NIKPTA  503 (590)
Q Consensus       481 ~~~~g~~~~A~~~~~~~-~~~p~~  503 (590)
                      |-+..++++|++-|+++ ...|..
T Consensus       178 yek~ek~eealeDyKki~E~dPs~  201 (271)
T KOG4234|consen  178 YEKMEKYEEALEDYKKILESDPSR  201 (271)
T ss_pred             HHhhhhHHHHHHHHHHHHHhCcch
Confidence            77888899999888887 555543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.33  E-value=3.1  Score=33.23  Aligned_cols=74  Identities=15%  Similarity=0.243  Sum_probs=48.6

Q ss_pred             HHHHHHHHH---hhccCChHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHH
Q 038522          436 VTFLSLLFA---CSHTGLTCEGWELFTDMINKYRILPR---AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSA  508 (590)
Q Consensus       436 ~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~  508 (590)
                      ...+.|++.   -...++.+++..+++.+.   -+.|+   ..++..  ..+...|++.+|..+|++. +-.+....-..
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kA   82 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALR---VLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKA   82 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHH---HhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHH
Confidence            344444443   345789999999999998   44565   444444  4467899999999999999 33334333344


Q ss_pred             HHHHHH
Q 038522          509 ILGACS  514 (590)
Q Consensus       509 l~~~~~  514 (590)
                      |...|.
T Consensus        83 L~A~CL   88 (153)
T TIGR02561        83 LLALCL   88 (153)
T ss_pred             HHHHHH
Confidence            444444

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=90.02  E-value=3.2  Score=37.61  Aligned_cols=59  Identities=17%  Similarity=0.256  Sum_probs=30.2

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 038522          403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMIN  463 (590)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  463 (590)
                      +..++..+...|+.+.+.+.++++...  .| +...|..++.+|...|+...|+..|+.+.+
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~--dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~  215 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIEL--DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK  215 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhc--CccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            334444555555555555555555543  23 455555555555555555555555555443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.01  E-value=0.68  Score=26.11  Aligned_cols=29  Identities=24%  Similarity=0.290  Sum_probs=26.0

Q ss_pred             chHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          538 VNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      .+|..++.+|...|++++|.+.|++..+.
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~   30 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            46889999999999999999999998763

...

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.95  E-value=0.63  Score=28.32  Aligned_cols=27  Identities=22%  Similarity=0.313  Sum_probs=23.3

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          541 VVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       541 ~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      ..|+.+|...|+.+.|+++++++.+.|
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl~~~   29 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVIEEG   29 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence            468899999999999999999988644

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=89.74  E-value=24  Score=35.47  Aligned_cols=90  Identities=11%  Similarity=0.127  Sum_probs=50.3

Q ss_pred             HHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHh-cCChHHHHHHhccCCC------CCccchHHHHHHH
Q 038522           34 MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAK-VGDVLSARKAFDRMPE------RNVVSWTAMISGY  106 (590)
Q Consensus        34 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~------~~~~~~~~li~~~  106 (590)
                      ......-.+.|..+.+.++|++-+.. ++.+...|......+.. .|+.+...+.|+....      ....-|...|.--
T Consensus        83 ~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~e  161 (577)
T KOG1258|consen   83 KKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFE  161 (577)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHH
Confidence            44444445566666666666666653 45555565555544332 3555555555555443      2334455556555


Q ss_pred             HhcCChHHHHHHHHHHHH
Q 038522          107 AQNGYDENALLVFSAMLR  124 (590)
Q Consensus       107 ~~~~~~~~a~~~~~~m~~  124 (590)
                      ..++++.....++++.++
T Consensus       162 n~qks~k~v~~iyeRile  179 (577)
T KOG1258|consen  162 NGQKSWKRVANIYERILE  179 (577)
T ss_pred             hccccHHHHHHHHHHHHh
Confidence            566666666666666665

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=89.65  E-value=0.9  Score=33.11  Aligned_cols=51  Identities=16%  Similarity=0.069  Sum_probs=24.5

Q ss_pred             CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC--CCcchHHHHHHHHHhcCC
Q 038522          502 TASLWSAILGACSIYGNTSLGELAARNLFDMEP--EKSVNYVVLSNIYTAAGA  552 (590)
Q Consensus       502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~~~~~~~l~~~~~~~g~  552 (590)
                      |......+...+...|+++.|++.+-.+++.+|  .+..+-..|+.++...|.
T Consensus        21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen   21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            334444555555555666666665555555554  224444455555555554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=89.36  E-value=1.4  Score=38.09  Aligned_cols=82  Identities=13%  Similarity=0.099  Sum_probs=57.9

Q ss_pred             cCChHHHHHHHHhc-CCCCCHhHH-HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038522          484 RGQLESAYNMIRQM-NIKPTASLW-SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRK  561 (590)
Q Consensus       484 ~g~~~~A~~~~~~~-~~~p~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~  561 (590)
                      ..++..|..-+.+. -+.|+..+| ..=+..+.+..+++.+..--++++++.|+.....+.++.+......+++|+..++
T Consensus        23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~eaI~~Lq  102 (284)
T KOG4642|consen   23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQ  102 (284)
T ss_pred             hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccHHHHHHH
Confidence            44556666666555 556666444 3344455667788888888888888888777888888888888888888888887


Q ss_pred             Hhhh
Q 038522          562 LMEE  565 (590)
Q Consensus       562 ~~~~  565 (590)
                      +..+
T Consensus       103 ra~s  106 (284)
T KOG4642|consen  103 RAYS  106 (284)
T ss_pred             HHHH
Confidence            7743

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=89.32  E-value=1.2  Score=40.54  Aligned_cols=87  Identities=22%  Similarity=0.210  Sum_probs=63.3

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc-
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR-  484 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-  484 (590)
                      ..-|.++|.+++|+..|.+...  +.| |++++..-..+|.+...+..|..-......-     |    ...+.+|.|. 
T Consensus       104 GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL-----d----~~Y~KAYSRR~  172 (536)
T KOG4648|consen  104 GNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL-----D----KLYVKAYSRRM  172 (536)
T ss_pred             hhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh-----h----HHHHHHHHHHH
Confidence            4578999999999999998876  467 9999999999999999998888777666532     1    2344555554 


Q ss_pred             ------CChHHHHHHHHhc-CCCCCHh
Q 038522          485 ------GQLESAYNMIRQM-NIKPTAS  504 (590)
Q Consensus       485 ------g~~~~A~~~~~~~-~~~p~~~  504 (590)
                            |+..+|.+-++.. .+.|+..
T Consensus       173 ~AR~~Lg~~~EAKkD~E~vL~LEP~~~  199 (536)
T KOG4648|consen  173 QARESLGNNMEAKKDCETVLALEPKNI  199 (536)
T ss_pred             HHHHHHhhHHHHHHhHHHHHhhCcccH
Confidence                  5556665555555 6677643

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=89.24  E-value=0.65  Score=38.34  Aligned_cols=107  Identities=11%  Similarity=0.043  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc---CChHHHHHHH-------Hhc-CCCCCH-hHHHHHHHHHHhcC-
Q 038522          451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARR---GQLESAYNMI-------RQM-NIKPTA-SLWSAILGACSIYG-  517 (590)
Q Consensus       451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~-------~~~-~~~p~~-~~~~~l~~~~~~~~-  517 (590)
                      ++.|.+..+.....  -+.|...++....++...   ....++.+++       +++ .+.|+. .++..+..++...+ 
T Consensus         7 FE~ark~aea~y~~--nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~   84 (186)
T PF06552_consen    7 FEHARKKAEAAYAK--NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAF   84 (186)
T ss_dssp             HHHHHHHHHHHHHH---TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh--CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHh
Confidence            45555555554433  133455544444443332   2223333333       332 445543 45555555554322 


Q ss_pred             ----------CchHHHHHHHHHhcCCCCCcchHHHHHHHHHh-cCChHHHHHHHHHhhhcC
Q 038522          518 ----------NTSLGELAARNLFDMEPEKSVNYVVLSNIYTA-AGAWDNARKTRKLMEERS  567 (590)
Q Consensus       518 ----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~  567 (590)
                                -+++|...|+++...+|.+        ..|.+ ......|-++..++.+.+
T Consensus        85 l~~d~~~A~~~F~kA~~~FqkAv~~~P~n--------e~Y~ksLe~~~kap~lh~e~~~~~  137 (186)
T PF06552_consen   85 LTPDTAEAEEYFEKATEYFQKAVDEDPNN--------ELYRKSLEMAAKAPELHMEIHKQG  137 (186)
T ss_dssp             H---HHHHHHHHHHHHHHHHHHHHH-TT---------HHHHHHHHHHHTHHHHHHHHHHSS
T ss_pred             hcCChHHHHHHHHHHHHHHHHHHhcCCCc--------HHHHHHHHHHHhhHHHHHHHHHHH
Confidence                      1445555555555666633        12322 234445555555555544

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=89.09  E-value=0.96  Score=38.47  Aligned_cols=64  Identities=13%  Similarity=0.143  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK  536 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  536 (590)
                      +.+.-+..+.+.+.+++|+...++- ..+| |...-..+++.++-.|++++|...++-+-++.|+.
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~   68 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQD   68 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCccc
Confidence            3445567778888888888888766 4455 45566777788888999999999998888888854

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=88.89  E-value=7.5  Score=28.55  Aligned_cols=89  Identities=16%  Similarity=0.158  Sum_probs=63.1

Q ss_pred             cchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 038522           44 KAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAML  123 (590)
Q Consensus        44 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  123 (590)
                      ...++|..|-+.+...+- ....+-..-+..+..+|++++|..+.+.+.-||...|-+|-.  .+.|-.+.+..-+.+|.
T Consensus        19 HcHqEA~tIAdwL~~~~~-~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla   95 (115)
T TIGR02508        19 HCHQEANTIADWLHLKGE-SEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA   95 (115)
T ss_pred             hHHHHHHHHHHHHhcCCc-hHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence            356788888888776542 233333334456778999999999999998899999987766  46677777777777787


Q ss_pred             HcCCCCCHhhHHH
Q 038522          124 RSGVRANQFTYSS  136 (590)
Q Consensus       124 ~~~~~p~~~~~~~  136 (590)
                      ..| .|....|..
T Consensus        96 ~sg-~p~lq~Faa  107 (115)
T TIGR02508        96 ASG-DPRLQTFVA  107 (115)
T ss_pred             hCC-CHHHHHHHH
Confidence            766 455555543

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=88.76  E-value=14  Score=31.33  Aligned_cols=89  Identities=10%  Similarity=0.001  Sum_probs=53.8

Q ss_pred             HHHHHhcCChHHHHHHHHhcCCCCCHhHHH-----HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522          478 VDLFARRGQLESAYNMIRQMNIKPTASLWS-----AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGA  552 (590)
Q Consensus       478 ~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  552 (590)
                      ...+..+|++++|...++..--.|....+.     .|.+.....|.++.|+..+....+..= .+..-..-+.++...|+
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~  174 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD  174 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc
Confidence            345566667777766666541122222222     233445567777777777665443322 22335556788888888


Q ss_pred             hHHHHHHHHHhhhcC
Q 038522          553 WDNARKTRKLMEERS  567 (590)
Q Consensus       553 ~~~A~~~~~~~~~~~  567 (590)
                      .++|+.-|++..+.+
T Consensus       175 k~~Ar~ay~kAl~~~  189 (207)
T COG2976         175 KQEARAAYEKALESD  189 (207)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            888888888887766

>PRK10941 hypothetical protein; Provisional

Probab=88.58  E-value=1.8  Score=39.16  Aligned_cols=62  Identities=16%  Similarity=0.097  Sum_probs=43.9

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          507 SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +.+-.+|.+.++++.|+...+.++.+.|+++.-+.-.+.+|.+.|.+..|..-++...+..+
T Consensus       185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P  246 (269)
T PRK10941        185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP  246 (269)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence            44555666777777777777777777777777777777777777777777777776665543

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=88.54  E-value=0.57  Score=26.13  Aligned_cols=29  Identities=10%  Similarity=0.030  Sum_probs=22.4

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          507 SAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                      -.+..++.+.|++++|.+.++++++..|+
T Consensus         4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            34566777788888888888888888874

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.50  E-value=3.9  Score=30.16  Aligned_cols=60  Identities=13%  Similarity=0.163  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522          418 EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVD  479 (590)
Q Consensus       418 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  479 (590)
                      +..+-++.+....+.|++......+.+|.+.+++..|..+++.++.+-+.  ....|..+++
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~--~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGN--KKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--hHHHHHHHHH
Confidence            55666777777788999999999999999999999999999999876432  3337776664

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=88.27  E-value=7.5  Score=32.81  Aligned_cols=58  Identities=19%  Similarity=0.166  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCCCCc------chHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522          371 VGNALIDMYAKSGEIADANRAFDEMGDKNV------ISWTSLIAGYAKHGYGHEAIELYKKMKH  428 (590)
Q Consensus       371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~  428 (590)
                      .+..+.+.|.+.|+.+.|.+.|.++.+...      ..+-.+++...-.+++..+...+.+...
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            345566666666666666666666654221      2344555556666666666666655543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=88.04  E-value=4.2  Score=29.61  Aligned_cols=62  Identities=15%  Similarity=0.190  Sum_probs=47.3

Q ss_pred             chHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522          416 GHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVD  479 (590)
Q Consensus       416 ~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  479 (590)
                      .-++.+-++.+....+.|++....+.+.+|.+.+++..|..+++.++.+-+.  +...|..+++
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq   84 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence            3456667777777788999999999999999999999999999988865232  4446666553

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=87.81  E-value=8.5  Score=32.50  Aligned_cols=96  Identities=14%  Similarity=0.060  Sum_probs=63.2

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH--HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHH--HH
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND--VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFS--CV  477 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--~l  477 (590)
                      .+..+..-|.+.|+.+.|++.|.++.+....|..  ..+-.++......+++..+...+.+.........|...-+  ..
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            5667788889999999999999998887555543  3456677778888888888888777765421111111111  11


Q ss_pred             HH--HHHhcCChHHHHHHHHhc
Q 038522          478 VD--LFARRGQLESAYNMIRQM  497 (590)
Q Consensus       478 ~~--~~~~~g~~~~A~~~~~~~  497 (590)
                      ..  .+...+++.+|-+.|-+.
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~  139 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDS  139 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHcc
Confidence            11  234567888887777666

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=87.57  E-value=1.7  Score=37.96  Aligned_cols=63  Identities=10%  Similarity=0.105  Sum_probs=41.9

Q ss_pred             HHHHHHHHHhcCCch-------HHHHHHHHHhcCC--C----CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          506 WSAILGACSIYGNTS-------LGELAARNLFDME--P----EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       506 ~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~--p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +..+.+.|...|+.+       .|.+.|+++.+..  |    +.....+.++.++.+.|++++|.++|..+...+-
T Consensus       121 ~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  121 CLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            444556666666644       4445555555332  2    2245677889999999999999999999988543

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=87.52  E-value=0.23  Score=45.12  Aligned_cols=90  Identities=12%  Similarity=0.226  Sum_probs=61.1

Q ss_pred             hcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522          483 RRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTR  560 (590)
Q Consensus       483 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  560 (590)
                      ..|.+++|++.|... .+.| ....|..-..++.+.+....|+.-+..+++++|+....|-.-+.+....|+|++|.+.+
T Consensus       126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl  205 (377)
T KOG1308|consen  126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHDL  205 (377)
T ss_pred             cCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHHH
Confidence            456667777776665 3333 33334444456667777777777777777888777777777777777778888888777


Q ss_pred             HHhhhcCCccCC
Q 038522          561 KLMEERSLRKNP  572 (590)
Q Consensus       561 ~~~~~~~~~~~~  572 (590)
                      ....+.++.+..
T Consensus       206 ~~a~kld~dE~~  217 (377)
T KOG1308|consen  206 ALACKLDYDEAN  217 (377)
T ss_pred             HHHHhccccHHH
Confidence            777777665543

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.43  E-value=1.8  Score=39.08  Aligned_cols=100  Identities=9%  Similarity=0.095  Sum_probs=71.3

Q ss_pred             cCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC-C------CccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh
Q 038522           60 GYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE-R------NVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQF  132 (590)
Q Consensus        60 ~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  132 (590)
                      |.+.+..+...++..-....+++.++..+-++.. |      +... .++++.+. .-+++.++.++..-+.-|+.||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            4455566666777666667788888877766654 2      2222 23334333 336778888888888889999999


Q ss_pred             hHHHHHHHHhccCchhhHHHHHHHHHhcC
Q 038522          133 TYSSALRACARMRWLQGGRMIQGSIQKGR  161 (590)
Q Consensus       133 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  161 (590)
                      +++.+|..+.+.+++.+|.++.-.|....
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            99999999999999988888877776653

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=87.30  E-value=5.1  Score=34.07  Aligned_cols=74  Identities=14%  Similarity=0.109  Sum_probs=52.3

Q ss_pred             hcCChHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC----CCcchHHHHHHHHHhcCChHHH
Q 038522          483 RRGQLESAYNMIRQMNIKP--TASLWSAILGACSIYGNTSLGELAARNLFDMEP----EKSVNYVVLSNIYTAAGAWDNA  556 (590)
Q Consensus       483 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A  556 (590)
                      +.|+ ++|++.|-.+.-.|  +....-..+..|....+.+++++++.+++++.+    .|+..+.+|+.+|.+.|+++.|
T Consensus       119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            4444 77888887772123  223333344455567899999999999996543    3688899999999999999887


Q ss_pred             H
Q 038522          557 R  557 (590)
Q Consensus       557 ~  557 (590)
                      =
T Consensus       198 Y  198 (203)
T PF11207_consen  198 Y  198 (203)
T ss_pred             h
Confidence            3

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.09  E-value=0.59  Score=37.95  Aligned_cols=84  Identities=13%  Similarity=0.144  Sum_probs=49.6

Q ss_pred             HHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHH
Q 038522          137 ALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDS  216 (590)
Q Consensus       137 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  216 (590)
                      ++..+.+.+.+.....+++.+.+.+...+....+.++..|++.++.++..++++....   .-...++..|.+.|.++++
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a   89 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA   89 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence            4455556666666677777777665556667777777777777776777777663322   3334455555555555555


Q ss_pred             HHHHHHH
Q 038522          217 FWLFRSM  223 (590)
Q Consensus       217 ~~~~~~m  223 (590)
                      .-++.++
T Consensus        90 ~~Ly~~~   96 (143)
T PF00637_consen   90 VYLYSKL   96 (143)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHc
Confidence            5555443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.06  E-value=0.69  Score=37.52  Aligned_cols=86  Identities=12%  Similarity=0.140  Sum_probs=63.3

Q ss_pred             HHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHH
Q 038522           35 SLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDEN  114 (590)
Q Consensus        35 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  114 (590)
                      .++..+.+.+.+.....+++.+...+...+...++.++..|++.++.+...++++....   .-...+++.|.+.|-+++
T Consensus        12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~   88 (143)
T PF00637_consen   12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE   88 (143)
T ss_dssp             CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence            35667777888888889999998877667788999999999999888888888884333   444566777777777777


Q ss_pred             HHHHHHHHH
Q 038522          115 ALLVFSAML  123 (590)
Q Consensus       115 a~~~~~~m~  123 (590)
                      +.-++.++.
T Consensus        89 a~~Ly~~~~   97 (143)
T PF00637_consen   89 AVYLYSKLG   97 (143)
T ss_dssp             HHHHHHCCT
T ss_pred             HHHHHHHcc
Confidence            777666643

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=86.99  E-value=43  Score=35.16  Aligned_cols=177  Identities=10%  Similarity=-0.022  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCC--CCcchHH-HHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522          371 VGNALIDMYAKSGEIADANRAFDEMGD--KNVISWT-SLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH  447 (590)
Q Consensus       371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  447 (590)
                      ....-+..-.+.++++.+...+..|..  .+...|. =+.+++...|+.++|...|+++..   ..   +|..++.+ .+
T Consensus       314 ~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~---~~---~fYG~LAa-~~  386 (644)
T PRK11619        314 LLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQ---QR---GFYPMVAA-QR  386 (644)
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhc---CC---CcHHHHHH-HH
Confidence            334444444566777777777777652  1111111 134454556777777777777632   11   23222211 11


Q ss_pred             cCChHH-HHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHH
Q 038522          448 TGLTCE-GWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAA  526 (590)
Q Consensus       448 ~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  526 (590)
                      .|..-. .......-...  +. . ..--.-+..+...|+...|...+..+....+......+.......|.++.++...
T Consensus       387 Lg~~~~~~~~~~~~~~~~--~~-~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~  462 (644)
T PRK11619        387 LGEEYPLKIDKAPKPDSA--LT-Q-GPEMARVRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQAT  462 (644)
T ss_pred             cCCCCCCCCCCCCchhhh--hc-c-ChHHHHHHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            121100 00000000000  00 0 0011234456677888888888877722345555666666667888888888777


Q ss_pred             HHHhcCCC---CCcchHHHHHHHHHhcCChHHHHH
Q 038522          527 RNLFDMEP---EKSVNYVVLSNIYTAAGAWDNARK  558 (590)
Q Consensus       527 ~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~  558 (590)
                      .+....+.   .-|..|...+..+...-..+.+.-
T Consensus       463 ~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~~~lv  497 (644)
T PRK11619        463 IAGKLWDHLEERFPLAWNDEFRRYTSGKGIPQSYA  497 (644)
T ss_pred             hhchhHHHHHHhCCcchHHHHHHHHHHcCCCHHHH
Confidence            65432110   113345555555555555555543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=86.80  E-value=26  Score=32.33  Aligned_cols=66  Identities=8%  Similarity=0.082  Sum_probs=30.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhccCC---CccchHHHHHHH---HhcCCChHHHHHHHHHHHHcCCCCCH
Q 038522          267 NKLTGSLIDVYAKYGSIRSAYQLYRSMLKT---DIISCTALISGF---ARDDNHSKEAFDLFKDMILKKMGIDD  334 (590)
Q Consensus       267 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~~~~l~~~~---~~~~~~~~~a~~~~~~~~~~~~~p~~  334 (590)
                      +.++..-+..+.+.++.+.+.+++.+|...   ....+...+..+   ....  ...+...+..++...+.|..
T Consensus       121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e~~~~~~l~~i~~l~~~~--~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSESNFDSILHHIKQLAEKS--PELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHHHhcccccchHHHHHHHHHHHHhhC--cHHHHHHHHHHHHHHhCCCh
Confidence            334434455555566666666666666322   122333333332   2222  34555555555544444443

It is also involved in sporulation [].

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.50  E-value=6.9  Score=39.02  Aligned_cols=44  Identities=14%  Similarity=0.087  Sum_probs=21.9

Q ss_pred             ccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          447 HTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       447 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                      +.|+++.|.++..+..       +..-|..|.++....|++..|.+.|.+.
T Consensus       649 ~lgrl~iA~~la~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a  692 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEAN-------SEVKWRQLGDAALSAGELPLASECFLRA  692 (794)
T ss_pred             hcCcHHHHHHHHHhhc-------chHHHHHHHHHHhhcccchhHHHHHHhh
Confidence            4455555555443332       2334555555555555555555555443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=86.49  E-value=4.3  Score=35.39  Aligned_cols=57  Identities=9%  Similarity=-0.084  Sum_probs=37.8

Q ss_pred             HHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          511 GACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       511 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      +.+...|++-++++....++...|.|..+|..-+.+.+..=+.++|..-|....+..
T Consensus       238 QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld  294 (329)
T KOG0545|consen  238 QCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD  294 (329)
T ss_pred             HHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence            334456677777777777777777777777777777766666666766666665543

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=86.43  E-value=24  Score=31.73  Aligned_cols=32  Identities=13%  Similarity=0.161  Sum_probs=20.6

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCChhhH
Q 038522          204 IGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL  235 (590)
Q Consensus       204 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  235 (590)
                      .+-..+.+++++|+..+.+....|+..|..+.
T Consensus        10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~   41 (421)
T COG5159          10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL   41 (421)
T ss_pred             HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence            34455666777777777777777766655443

>smart00028 TPR Tetratricopeptide repeats

Probab=86.37  E-value=1.3  Score=23.95  Aligned_cols=27  Identities=26%  Similarity=0.268  Sum_probs=14.4

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          539 NYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       539 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .+..++.++...|++++|...++...+
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            344555555555555555555555443

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=86.34  E-value=83  Score=37.75  Aligned_cols=160  Identities=11%  Similarity=-0.045  Sum_probs=89.9

Q ss_pred             HHHHHhccCchhhHHHHHHHHHhcCC--CCchHHHHHHHHHHHhcCChHHHHHHHhc-cCCCCcchHHHHHHHHHhcCCc
Q 038522          137 ALRACARMRWLQGGRMIQGSIQKGRF--VENLFVKSALLDLYAKCGWIEDAWILFER-IERKDVVSWNAMIGGLAMQGFN  213 (590)
Q Consensus       137 ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~~~~  213 (590)
                      +..+-.+.+.+..|...++.-.....  ......+-.+...|+.-+++|....+... ...++   ...-|-.....|++
T Consensus      1389 La~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~ 1465 (2382)
T KOG0890|consen 1389 LARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNW 1465 (2382)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccH
Confidence            33344566777777777776311111  12233444555588888888877776663 33332   23344556678889


Q ss_pred             hHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhH-HHHHHHHHHhcCChHHHHHHHHh
Q 038522          214 DDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKL-TGSLIDVYAKYGSIRSAYQLYRS  292 (590)
Q Consensus       214 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~  292 (590)
                      ..|...|+.+.+.+ ++...+++.++......|.++...-..+-..... .+.... ++.=+.+--+.++++....... 
T Consensus      1466 ~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~~l~- 1542 (2382)
T KOG0890|consen 1466 ADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLESYLS- 1542 (2382)
T ss_pred             HHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhhhhh-
Confidence            99999999988764 3346677777777666776666555433332221 122211 2222333356666666666554 


Q ss_pred             ccCCCccchHHH
Q 038522          293 MLKTDIISCTAL  304 (590)
Q Consensus       293 ~~~~~~~~~~~l  304 (590)
                        ..+..+|...
T Consensus      1543 --~~n~e~w~~~ 1552 (2382)
T KOG0890|consen 1543 --DRNIEYWSVE 1552 (2382)
T ss_pred             --cccccchhHH
Confidence              4455555554

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=86.09  E-value=1.9  Score=27.60  Aligned_cols=33  Identities=12%  Similarity=0.127  Sum_probs=23.6

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522          508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNY  540 (590)
Q Consensus       508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  540 (590)
                      .+.-++.+.|+++.|....+.+++++|+|..+.
T Consensus         6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~   38 (53)
T PF14853_consen    6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ   38 (53)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence            455677788888888888888888888665543

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.37  E-value=51  Score=34.45  Aligned_cols=171  Identities=11%  Similarity=0.022  Sum_probs=89.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCC---CHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHh
Q 038522          102 MISGYAQNGYDENALLVFSAMLRSGVRA---NQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAK  178 (590)
Q Consensus       102 li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  178 (590)
                      -|+-+.+.+.+++|+...+....  ..|   -.......|..+...|++++|-...-.|...    +..-|..-+..+..
T Consensus       362 hi~Wll~~k~yeeAl~~~k~~~~--~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~e  435 (846)
T KOG2066|consen  362 HIDWLLEKKKYEEALDAAKASIG--NEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFAE  435 (846)
T ss_pred             hHHHHHHhhHHHHHHHHHHhccC--CccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhcc
Confidence            46667788888888888776543  333   3345666677777777887777766666443    23333333333444


Q ss_pred             cCChHHHHHHHhccCC-CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHH
Q 038522          179 CGWIEDAWILFERIER-KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDL  257 (590)
Q Consensus       179 ~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  257 (590)
                      .++....-.++-.-.. -+...|..++..++. .+    ..-|.+.+.. .+++...-..++++-  ..          +
T Consensus       436 ~~~l~~Ia~~lPt~~~rL~p~vYemvLve~L~-~~----~~~F~e~i~~-Wp~~Lys~l~iisa~--~~----------q  497 (846)
T KOG2066|consen  436 LDQLTDIAPYLPTGPPRLKPLVYEMVLVEFLA-SD----VKGFLELIKE-WPGHLYSVLTIISAT--EP----------Q  497 (846)
T ss_pred             ccccchhhccCCCCCcccCchHHHHHHHHHHH-HH----HHHHHHHHHh-CChhhhhhhHHHhhc--ch----------H
Confidence            4443322222211111 144567777776665 11    2222222221 133333222222221  11          1


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCc
Q 038522          258 IIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDI  298 (590)
Q Consensus       258 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  298 (590)
                      +.+.  ..+...-..|+..|...+++.+|..++-.+.+++.
T Consensus       498 ~~q~--Se~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~~v  536 (846)
T KOG2066|consen  498 IKQN--SESTALLEVLAHLYLYDNKYEKALPIYLKLQDKDV  536 (846)
T ss_pred             HHhh--ccchhHHHHHHHHHHHccChHHHHHHHHhccChHH
Confidence            1111  12223334488889999999999999888766544

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=85.27  E-value=0.75  Score=44.12  Aligned_cols=93  Identities=11%  Similarity=0.096  Sum_probs=42.1

Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHH-HHHHHhcCChHHHHHHHHhc-CCCCCH-hHHHHHHHHHHhcCCch
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCV-VDLFARRGQLESAYNMIRQM-NIKPTA-SLWSAILGACSIYGNTS  520 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~  520 (590)
                      .....+.++.|..++.++++   +.|+...|-+. ..++.+.+++..|+.=+.++ ...|.. ..|-.=..+|...+++.
T Consensus        13 ~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~   89 (476)
T KOG0376|consen   13 EALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFK   89 (476)
T ss_pred             hhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHH
Confidence            34444555556655555553   24443222221 24445555555555444443 333321 22222223344445555


Q ss_pred             HHHHHHHHHhcCCCCCcch
Q 038522          521 LGELAARNLFDMEPEKSVN  539 (590)
Q Consensus       521 ~a~~~~~~~~~~~p~~~~~  539 (590)
                      +|+..++....+.|+++.+
T Consensus        90 ~A~~~l~~~~~l~Pnd~~~  108 (476)
T KOG0376|consen   90 KALLDLEKVKKLAPNDPDA  108 (476)
T ss_pred             HHHHHHHHhhhcCcCcHHH
Confidence            5555555555555544443

>smart00028 TPR Tetratricopeptide repeats

Probab=85.08  E-value=1.7  Score=23.47  Aligned_cols=31  Identities=10%  Similarity=0.062  Sum_probs=27.1

Q ss_pred             hHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          504 SLWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      ..|..+...+...|+++.|...++++++..|
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~   32 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDP   32 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            3567778888899999999999999998887

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]

Probab=85.07  E-value=13  Score=34.07  Aligned_cols=15  Identities=13%  Similarity=0.166  Sum_probs=10.5

Q ss_pred             HHHHHHHHHhcCCCC
Q 038522          521 LGELAARNLFDMEPE  535 (590)
Q Consensus       521 ~a~~~~~~~~~~~p~  535 (590)
                      .|.+...++.+.+|.
T Consensus       380 ~AvEAihRAvEFNPH  394 (556)
T KOG3807|consen  380 NAVEAIHRAVEFNPH  394 (556)
T ss_pred             HHHHHHHHHhhcCCC
Confidence            466677777787774

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=84.90  E-value=25  Score=30.39  Aligned_cols=159  Identities=12%  Similarity=-0.016  Sum_probs=86.2

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcc-hHHHHHH--HHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGDKNVI-SWTSLIA--GYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA  444 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~l~~--~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  444 (590)
                      -+.+||-+.-.+...|+++.|.+.|+...+-|+. -|..+=+  ++.-.|++.-|.+-+.+.-+.  .|+..--...+-.
T Consensus        98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~--D~~DPfR~LWLYl  175 (297)
T COG4785          98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD--DPNDPFRSLWLYL  175 (297)
T ss_pred             cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhc--CCCChHHHHHHHH
Confidence            3667788888888899999999999988865543 3333322  233467888887777666654  2322111111111


Q ss_pred             hhccCChHHHHHH-HHHHHhhcCCCCChhHHHHHHHHHHh-cCChHHHHHHHHhcCCCCC-------HhHHHHHHHHHHh
Q 038522          445 CSHTGLTCEGWEL-FTDMINKYRILPRAEHFSCVVDLFAR-RGQLESAYNMIRQMNIKPT-------ASLWSAILGACSI  515 (590)
Q Consensus       445 ~~~~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~p~-------~~~~~~l~~~~~~  515 (590)
                      -...-++.+|..- .++..     ..+..-|...|-.|.- .=..+.+.+-...- ...+       ..+|--+.+-+..
T Consensus       176 ~E~k~dP~~A~tnL~qR~~-----~~d~e~WG~~iV~~yLgkiS~e~l~~~~~a~-a~~n~~~Ae~LTEtyFYL~K~~l~  249 (297)
T COG4785         176 NEQKLDPKQAKTNLKQRAE-----KSDKEQWGWNIVEFYLGKISEETLMERLKAD-ATDNTSLAEHLTETYFYLGKYYLS  249 (297)
T ss_pred             HHhhCCHHHHHHHHHHHHH-----hccHhhhhHHHHHHHHhhccHHHHHHHHHhh-ccchHHHHHHHHHHHHHHHHHHhc
Confidence            1233455565543 33333     2244444443333221 11112222222111 1111       2356666777788


Q ss_pred             cCCchHHHHHHHHHhcCCC
Q 038522          516 YGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       516 ~~~~~~a~~~~~~~~~~~p  534 (590)
                      .|+.+.|..+++-++..+.
T Consensus       250 ~G~~~~A~~LfKLaiannV  268 (297)
T COG4785         250 LGDLDEATALFKLAVANNV  268 (297)
T ss_pred             cccHHHHHHHHHHHHHHhH
Confidence            8999999999988886654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=84.89  E-value=3.4  Score=37.04  Aligned_cols=61  Identities=15%  Similarity=0.054  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ++......|...|.+.+|.++-+++++++|-+...+-.|...|+..|+--.|.+.++.+.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            3455667888999999999999999999999999999999999999998888888887754

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=84.50  E-value=8.5  Score=28.12  Aligned_cols=47  Identities=13%  Similarity=0.089  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHH
Q 038522          316 KEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFK  362 (590)
Q Consensus       316 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  362 (590)
                      =++.+-++.+....+.|++....+.+++|.+.+++..|.++++....
T Consensus        24 we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          24 WELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            34555666666667788888888888888888888888888887663

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.39  E-value=13  Score=33.91  Aligned_cols=101  Identities=16%  Similarity=0.129  Sum_probs=70.7

Q ss_pred             hCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCc-----chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHH
Q 038522          363 YQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD-KNV-----ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDV  436 (590)
Q Consensus       363 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  436 (590)
                      .|.+.+..+...++..-....+++++...+-++.. |+.     .+-.+.++.+. .-++++++.++..=++-|+-||..
T Consensus        58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            34444444555555555566778888887777763 221     11222333333 336779999999888999999999


Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhh
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINK  464 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~  464 (590)
                      +++.+++.+.+.+++.+|..+.-.|...
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            9999999999999999998887777654

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=84.11  E-value=63  Score=34.45  Aligned_cols=217  Identities=14%  Similarity=0.029  Sum_probs=117.9

Q ss_pred             HhchhhhHhHHHHHHHHHHhCCCcch-------hHHHHHHH-HHHhcCChHHHHHHHHhcCC--------CCcchHHHHH
Q 038522          344 CANVASLNLGRQIHAFAFKYQSSYDA-------AVGNALID-MYAKSGEIADANRAFDEMGD--------KNVISWTSLI  407 (590)
Q Consensus       344 ~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~l~  407 (590)
                      .....++.+|..+...+...-..|+.       ..++.+-. .....|+++.|.++-+...+        +.+..+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            34566777777777776554333221       12222222 22346888888887776542        3556777788


Q ss_pred             HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHH---HH--HHHhhccCC--hHHHHHHHHHHHhhcCCC-C----ChhHHH
Q 038522          408 AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFL---SL--LFACSHTGL--TCEGWELFTDMINKYRIL-P----RAEHFS  475 (590)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~l--l~~~~~~~~--~~~a~~~~~~~~~~~~~~-~----~~~~~~  475 (590)
                      .+..-.|++++|..+.++..+..-.-+...+.   .+  ...+...|.  +.+....+......+... |    -..++.
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            88888999999988887766532222332222   22  233556673  334444444444332111 1    123344


Q ss_pred             HHHHHHHhcCChHHHHHHHHhc-----CCCCCH--hHH--HHHHHHHHhcCCchHHHHHHHHHhcCCCCC--cchHH---
Q 038522          476 CVVDLFARRGQLESAYNMIRQM-----NIKPTA--SLW--SAILGACSIYGNTSLGELAARNLFDMEPEK--SVNYV---  541 (590)
Q Consensus       476 ~l~~~~~~~g~~~~A~~~~~~~-----~~~p~~--~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~---  541 (590)
                      .+..++.+   ++.+..-....     ...|.+  ...  ..++......|+.++|...+.++..+.-.+  ...|.   
T Consensus       585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~  661 (894)
T COG2909         585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA  661 (894)
T ss_pred             HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence            44445544   44433333222     222322  222  256677788999999999999888543211  22222   


Q ss_pred             HHHH--HHHhcCChHHHHHHHHHh
Q 038522          542 VLSN--IYTAAGAWDNARKTRKLM  563 (590)
Q Consensus       542 ~l~~--~~~~~g~~~~A~~~~~~~  563 (590)
                      ..+.  .-..+|+.++|...+.+-
T Consensus       662 ~~v~~~lwl~qg~~~~a~~~l~~s  685 (894)
T COG2909         662 YKVKLILWLAQGDKELAAEWLLKS  685 (894)
T ss_pred             HHhhHHHhcccCCHHHHHHHHHhc
Confidence            2222  233679999998888763

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=81.50  E-value=19  Score=26.68  Aligned_cols=56  Identities=16%  Similarity=0.191  Sum_probs=36.3

Q ss_pred             HHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHH
Q 038522          489 SAYNMIRQM---NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLS  544 (590)
Q Consensus       489 ~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  544 (590)
                      +..+-+..+   .+-|++....+.+++|.+.+++..|+.+++-+...-.+....|..+.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l   86 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL   86 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence            334444443   77899999999999999999999999999988854443333555543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=81.25  E-value=53  Score=31.59  Aligned_cols=56  Identities=7%  Similarity=0.097  Sum_probs=41.5

Q ss_pred             HHHHHhcCCchHHHHHHHHHhcCCCC-CcchHHHHHHHHH-hcCChHHHHHHHHHhhh
Q 038522          510 LGACSIYGNTSLGELAARNLFDMEPE-KSVNYVVLSNIYT-AAGAWDNARKTRKLMEE  565 (590)
Q Consensus       510 ~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~  565 (590)
                      +....+.|-+..|.+..+-++.++|. ||......+..|+ +.++++--+++.+....
T Consensus       110 i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~  167 (360)
T PF04910_consen  110 IQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLA  167 (360)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhh
Confidence            34566788888888888888888886 7777777777666 66777777777776544

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=81.10  E-value=12  Score=32.00  Aligned_cols=73  Identities=10%  Similarity=0.054  Sum_probs=35.6

Q ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhc--CCCCChhHHHHHHHHHHhcCChHHH
Q 038522          417 HEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKY--RILPRAEHFSCVVDLFARRGQLESA  490 (590)
Q Consensus       417 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A  490 (590)
                      +.|.+.|-++...+.--++.....|..-| ...+.+++..++-+..+-.  +-.+|+..+..|+..+.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY-~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYY-TKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHH-HccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            45555555555544333333333333333 3445556666555554432  1134455555555555555555554

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=80.93  E-value=31  Score=33.60  Aligned_cols=131  Identities=13%  Similarity=0.122  Sum_probs=87.4

Q ss_pred             HHHHHhcCCchHHHHHHHH-HHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC
Q 038522          407 IAGYAKHGYGHEAIELYKK-MKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG  485 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  485 (590)
                      |.--...|+...|.+-+.. +....-.|+......  ......|+++.+.+.+....+  -+.....+...+++.....|
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~  371 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLA  371 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchh
Confidence            3334456777776554444 444333445444433  346778999999998888774  23445677888888999999


Q ss_pred             ChHHHHHHHHhc-C-CCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHH
Q 038522          486 QLESAYNMIRQM-N-IKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYV  541 (590)
Q Consensus       486 ~~~~A~~~~~~~-~-~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  541 (590)
                      ++++|...-..| + .-.++.............|-++++...|++++.++|+....+.
T Consensus       372 r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v  429 (831)
T PRK15180        372 RWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWV  429 (831)
T ss_pred             hHHHHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccce
Confidence            999999998888 3 2234444444444455678889999999999999875444333

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=80.62  E-value=12  Score=34.43  Aligned_cols=89  Identities=11%  Similarity=0.055  Sum_probs=70.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhc----CCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          475 SCVVDLFARRGQLESAYNMIRQM----NIKP--TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       475 ~~l~~~~~~~g~~~~A~~~~~~~----~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      .-=.+-|.+.+++..|...|.+.    --.|  +...|+.-..+....|++..++.-..+++..+|.+..+|..=+.++.
T Consensus        85 KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~  164 (390)
T KOG0551|consen   85 KEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLL  164 (390)
T ss_pred             HHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHH
Confidence            33345678888999999999876    1133  33456555556667899999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHh
Q 038522          549 AAGAWDNARKTRKLM  563 (590)
Q Consensus       549 ~~g~~~~A~~~~~~~  563 (590)
                      ...++++|..+.++.
T Consensus       165 eLe~~~~a~nw~ee~  179 (390)
T KOG0551|consen  165 ELERFAEAVNWCEEG  179 (390)
T ss_pred             HHHHHHHHHHHHhhh
Confidence            999988888877764

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=80.37  E-value=7.4  Score=30.52  Aligned_cols=70  Identities=9%  Similarity=0.034  Sum_probs=38.8

Q ss_pred             CCChhHHHHHHHHHHhcCC---hHHHHHHHHhc-C-CCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522          468 LPRAEHFSCVVDLFARRGQ---LESAYNMIRQM-N-IKPT--ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       468 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~-~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      .++..+--.+..++.+..+   ..+.+.++++. . -+|+  .....-|.-++.+.++++.+++..+.+++.+|+|.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            3444444455555555543   33455566555 2 2332  23334445566677777777777777777777443

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=80.13  E-value=3.1  Score=24.60  Aligned_cols=27  Identities=11%  Similarity=-0.008  Sum_probs=20.1

Q ss_pred             hHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522          504 SLWSAILGACSIYGNTSLGELAARNLF  530 (590)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~  530 (590)
                      .+++.+...|...|++++|+.++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            456777778888888888888888776

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	590
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-09
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	9e-08
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-05

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 58.3 bits (139), Expect = 6e-09
 Identities = 21/174 (12%), Positives = 62/174 (35%), Gaps = 7/174 (4%)

Query: 337 LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG 396
           L  +L       SL++ +       + Q S       A       + ++  A+       
Sbjct: 95  LARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHH 154

Query: 397 DK-------NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG 449
            +        +  + +++ G+A+ G   E + +   +K  G+ P+ +++ + L       
Sbjct: 155 GQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQD 214

Query: 450 LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTA 503
                 E   + +++  +  +A   + ++    R   L++ + +    ++ P  
Sbjct: 215 QDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 54.4 bits (129), Expect = 9e-08
 Identities = 18/148 (12%), Positives = 40/148 (27%), Gaps = 7/148 (4%)

Query: 4   VRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYES 63
           V     + Q+   L+                 LLQ    K +                  
Sbjct: 66  VEPRLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSG 125

Query: 64  NLHLSTKVIIFYAKVGDVLSARKAFDRMPER-------NVVSWTAMISGYAQNGYDENAL 116
                            +  A         +        +  + A++ G+A+ G  +  +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185

Query: 117 LVFSAMLRSGVRANQFTYSSALRACARM 144
            V   +  +G+  +  +Y++AL+   R 
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQ 213

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 47.1 bits (110), Expect = 1e-05
 Identities = 17/134 (12%), Positives = 40/134 (29%), Gaps = 7/134 (5%)

Query: 115 ALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLD 174
           A  +     ++     +   +  L+       L   +   G   + +         A   
Sbjct: 76  AGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFK 135

Query: 175 LYAKCGWIEDAWILFERIERK-------DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQG 227
                  +  A  L      +        +  +NA++ G A QG   +  ++   +   G
Sbjct: 136 CCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAG 195

Query: 228 MKPDCFTLGSILRA 241
           + PD  +  + L+ 
Sbjct: 196 LTPDLLSYAAALQC 209

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 4e-07
 Identities = 70/482 (14%), Positives = 139/482 (28%), Gaps = 151/482 (31%)

Query: 1   MNIVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSL------------LQFCIDKKAERQ 48
            N+ R      +L+QAL          L P+  + +            L  C+  K + +
Sbjct: 129 YNVSRLQPYL-KLRQALL--------ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 49  AHLIHAHIITNGYESNLHLSTKVII-----FYAKVGDVLSARKAFDRMPERNVVSWTAMI 103
                   +     +    S + ++        ++    ++R       +  + S  A +
Sbjct: 180 MDF-KIFWLNLKNCN----SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234

Query: 104 SGY-AQNGYDENALLVFSAMLRSGVRANQFTYSSALRA----CARM----RWLQGGRMIQ 154
                   Y EN LLV    L   V+      + A  A    C ++    R+ Q    + 
Sbjct: 235 RRLLKSKPY-ENCLLV----LL-NVQ-----NAKAWNAFNLSC-KILLTTRFKQVTDFLS 282

Query: 155 GSIQKGRFVENL---FVKSALLDLYAKCGWIEDAWILFERIERKDVVSWN----AMIGGL 207
            +      +++         +  L  K           + +  ++V++ N    ++I   
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKY-----LDCRPQDL-PREVLTTNPRRLSIIAES 336

Query: 208 AMQGFNDDSFWL------FRSMMRQGM---KPD----CFTLGSILRASVGGI-------- 246
              G      W         +++   +   +P      F   S+   S   I        
Sbjct: 337 IRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH-IPTILLSLI 395

Query: 247 --------------ELMKIS-----------QIHDLIIKLGLESSNKLTGSLIDVYAKYG 281
                         +L K S            I  + ++L ++  N+        YA + 
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE--------YALHR 447

Query: 282 SIRSAYQLYRSMLKTDIISCTALISGFARDDN--------HSKEA-----FDLFKDMIL- 327
           SI   Y + ++    D+I            D         H K         LF+ + L 
Sbjct: 448 SIVDHYNIPKTFDSDDLIP--------PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD 499

Query: 328 -----KKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS 382
                +K+  D        +I   +  L   +    +       Y+  V NA++D   K 
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKP---YICDNDPKYERLV-NAILDFLPKI 555

Query: 383 GE 384
            E
Sbjct: 556 EE 557

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.0 bits (108), Expect = 3e-05
 Identities = 85/626 (13%), Positives = 187/626 (29%), Gaps = 156/626 (24%)

Query: 50  HLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQN 109
           H  H H+     E        + +F     D    +   D    ++++S   +       
Sbjct: 1   HHHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP--KSILSKEEIDHIIMSK 58

Query: 110 GYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGG---RMIQGSIQKGRFVE-- 164
                 L +F  +L       Q      LR     ++L         Q S+    ++E  
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI--NYKFLMSPIKTEQRQPSMMTRMYIEQR 116

Query: 165 -------NLFVKSAL--LDLYAKCGWIEDAWILFERIERKDVVSWNAMIG-G---LAMQG 211
                   +F K  +  L  Y K   +  A  L E    K+V+  + ++G G   +A+  
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLK---LRQA--LLELRPAKNVLI-DGVLGSGKTWVALDV 170

Query: 212 FNDDS---------FWLFRSMMRQGMKPD---------CFTLGSILRASVGGIELMKISQ 253
                         FWL    ++    P+          + +     +       +K+ +
Sbjct: 171 CLSYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL-R 226

Query: 254 IHDLIIKL-GLESSNKLTGSLI---DVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFA 309
           IH +  +L  L  S      L+   +V           + + +    + +SC  L++   
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNA--------KAWNAF---N-LSCKILLT--T 272

Query: 310 RDDNHSKEAFDLFKDMILKKMGIDDVILCL----MLNICANVASLNLG------RQIHAF 359
           R     K+  D         + +D   + L    + ++                   +  
Sbjct: 273 RF----KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 360 AFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEA 419
                    + +  ++ D  A        N   D++      S   L     +       
Sbjct: 329 RL-------SIIAESIRDGLATWDNWKHVN--CDKLTTIIESSLNVLEPAEYR------- 372

Query: 420 IELYKKMKHEGMVPNDV----TFLSLLFACSHTGLTCEGW--------ELFTDMINKYRI 467
            +++ ++    + P         LSL+            W         +  + ++KY +
Sbjct: 373 -KMFDRL---SVFPPSAHIPTILLSLI------------WFDVIKSDVMVVVNKLHKYSL 416

Query: 468 LPR-AEHFSCVV-DLFAR-RGQLESAYNM----IRQMNIKPTASLWSAILGACSIYGNTS 520
           + +  +  +  +  ++   + +LE+ Y +    +   NI  T      I      Y  + 
Sbjct: 417 VEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 521 LG------ELAARNLFDMEPEKSVNYVVLSN-IYTAAGAWDNARKTRKLME-----ERSL 568
           +G      E   R    +     +++  L   I   + AW+ +      ++     +  +
Sbjct: 477 IGHHLKNIEHPER--MTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYI 534

Query: 569 RKN-PGYS--------FLQSSKKNIL 585
             N P Y         FL   ++N++
Sbjct: 535 CDNDPKYERLVNAILDFLPKIEENLI 560

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	590
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.94
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.93
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.82
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.81
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.8
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.79
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.78
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.77
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.77
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.77
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.75
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.74
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.74
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.72
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.7
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.68
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.66
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.66
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.63
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.61
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.6
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.6
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.59
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.58
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.57
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.56
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.55
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.54
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.54
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.53
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.52
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.51
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.51
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.5
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.5
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.5
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.48
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.47
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.47
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.45
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.42
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.41
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.41
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.41
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.39
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.37
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.36
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.36
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.34
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.33
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.33
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.33
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.32
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.3
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.3
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.27
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.22
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.22
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.17
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.17
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.17
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.16
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.14
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.11
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.11
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.11
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.1
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.1
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.09
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.05
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.05
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.03
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.02
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.02
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.01
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.01
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.99
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.97
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.95
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.95
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.93
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.92
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.9
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.9
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.89
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.89
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.88
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.85
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.83
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.82
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.82
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.82
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.82
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.78
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.78
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.78
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.77
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.77
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.77
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.76
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.75
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.75
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.74
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.74
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.73
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.71
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.7
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.69
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.66
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.65
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.64
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.64
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.63
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.63
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.61
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.6
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.59
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.59
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.59
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.59
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.56
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.55
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.55
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.53
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.52
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.52
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.51
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.51
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.5
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.48
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.47
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.47
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.46
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.44
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.44
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.43
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.42
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.42
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.4
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.38
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.38
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.37
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.37
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.36
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.35
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.33
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.32
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.32
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.31
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.31
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.29
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.28
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.27
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.27
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.26
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.24
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.22
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.2
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.2
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.16
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.13
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.1
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.09
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.08
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.08
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.08
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.06
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.04
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.02
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.91
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.85
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.78
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.77
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.65
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.61
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.61
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.58
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.52
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.51
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.51
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.44
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.39
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	97.39
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.38
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	97.36
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.3
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.27
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.22
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.12
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.12
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.99
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	96.98
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.97
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	96.66
1pc2_A	152	Mitochondria fission protein; unknown function; NM	96.58
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.4
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.37
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.36
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	96.23
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.21
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.01
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.76
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.76
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	95.69
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.52
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	95.5
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	95.16
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.49
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	94.45
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.3
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	94.19
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.35
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.86
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.6
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.13
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.59
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	90.18
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	90.05
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	89.9
2p58_C	116	Putative type III secretion protein YSCG; type III	89.85
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	89.82
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.45
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.76
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	87.14
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	86.97
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	86.82
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	86.72
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.65
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.64
2p58_C	116	Putative type III secretion protein YSCG; type III	86.45
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.24
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	85.88
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	85.68
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	85.43
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	85.37
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	82.56
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	81.76
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	80.38

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.4e-41  Score=349.55  Aligned_cols=483  Identities=10%  Similarity=-0.060  Sum_probs=402.9

Q ss_pred             HHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHH
Q 038522           75 YAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQ  154 (590)
Q Consensus        75 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  154 (590)
                      +...|.+..+...+..++.++...|+.++..+.+.|++++|+.+|++|.+  ..|+..++..+...|.+.|++++|..++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~  140 (597)
T 2xpi_A           63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL  140 (597)
T ss_dssp             -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence            45677788888888888888999999999999999999999999999985  5688899999999999999999999999


Q ss_pred             HHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCC-------------------CcchHHHHHHHHHhcCCchH
Q 038522          155 GSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERK-------------------DVVSWNAMIGGLAMQGFNDD  215 (590)
Q Consensus       155 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~~~  215 (590)
                      +.+...  +++..+++.++.+|.+.|++++|.++|+++...                   +..+|+.++.+|.+.|++++
T Consensus       141 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  218 (597)
T 2xpi_A          141 TKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDR  218 (597)
T ss_dssp             HHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHH
Confidence            988653  688899999999999999999999999965433                   37789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHH--HH-HHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522          216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKIS--QI-HDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRS  292 (590)
Q Consensus       216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  292 (590)
                      |.++|++|.+.+ +.+...+..+...+...+..+...  .+ +..+...+..+...+|+.++..|.+.|++++|.++|++
T Consensus       219 A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~  297 (597)
T 2xpi_A          219 AKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSS  297 (597)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHH
Confidence            999999999864 223444555554444433322221  11 44444444455566777778899999999999999999


Q ss_pred             ccC--CCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchh
Q 038522          293 MLK--TDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAA  370 (590)
Q Consensus       293 ~~~--~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  370 (590)
                      +..  ++..+++.++..+.+.|+ +++|..+|+++.+.+ +.+..++..++.++...|++++|..+++.+.+.. +.+..
T Consensus       298 ~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~  374 (597)
T 2xpi_A          298 INGLEKSSDLLLCKADTLFVRSR-FIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAV  374 (597)
T ss_dssp             STTGGGCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHH
T ss_pred             hhcCCchHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHH
Confidence            976  788999999999999999 999999999999765 4477889999999999999999999999998665 34788


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc
Q 038522          371 VGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH  447 (590)
Q Consensus       371 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~  447 (590)
                      +++.++.+|.+.|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +++..++..++.+|.+
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  453 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQ  453 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            89999999999999999999999876   3467799999999999999999999999999863 4578899999999999


Q ss_pred             cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-------CCCCC--HhHHHHHHHHHHhcCC
Q 038522          448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-------NIKPT--ASLWSAILGACSIYGN  518 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~--~~~~~~l~~~~~~~~~  518 (590)
                      .|++++|.++|+++.+.  .+.+..+|..++..|.+.|++++|.++|+++       +..|+  ..+|..++.+|.+.|+
T Consensus       454 ~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  531 (597)
T 2xpi_A          454 LGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKM  531 (597)
T ss_dssp             HTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcC
Confidence            99999999999999975  2446889999999999999999999999998       44777  6789999999999999


Q ss_pred             chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          519 TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       519 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +++|+..++++++.+|+++.+|..++.+|...|++++|.++++++.+..+
T Consensus       532 ~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p  581 (597)
T 2xpi_A          532 YDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP  581 (597)
T ss_dssp             HHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence            99999999999999999999999999999999999999999999988654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.8e-40  Score=341.72  Aligned_cols=479  Identities=10%  Similarity=-0.011  Sum_probs=382.9

Q ss_pred             CchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 038522           63 SNLHLSTKVIIFYAKVGDVLSARKAFDRMPE--RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRA  140 (590)
Q Consensus        63 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  140 (590)
                      ++...|+.++..|.+.|++++|..+|+++..  |+..++..++.+|.+.|++++|+.+|+.+..  .+++..+++.++..
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~l~~~  159 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDL--YNRSSACRYLAAFC  159 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCG--GGTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhc--cccchhHHHHHHHH
Confidence            4566677777777777777777777766653  5666666677777777777777777776643  24666677777777


Q ss_pred             HhccCchhhHHHHHHHHHh---------------cCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCC---CcchHHH
Q 038522          141 CARMRWLQGGRMIQGSIQK---------------GRFVENLFVKSALLDLYAKCGWIEDAWILFERIERK---DVVSWNA  202 (590)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~  202 (590)
                      +.+.|++++|..+|+++..               .+.+++..+++.++.+|.+.|++++|.++|+++.+.   +...+..
T Consensus       160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  239 (597)
T 2xpi_A          160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQ  239 (597)
T ss_dssp             HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence            7777777777777663211               133456788999999999999999999999988753   2334444


Q ss_pred             HHHHHHhcCCchHHH--HH-HHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 038522          203 MIGGLAMQGFNDDSF--WL-FRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAK  279 (590)
Q Consensus       203 li~~~~~~~~~~~a~--~~-~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  279 (590)
                      +...+...+..+.+.  .+ +..+...+..+...+|+.++..|.+.|++++|.++|+.+.+.  +++..++..++.+|.+
T Consensus       240 l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~  317 (597)
T 2xpi_A          240 LVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFV  317 (597)
T ss_dssp             HHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHH
T ss_pred             HHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHH
Confidence            444333332222211  11 455555555556667777788899999999999999998766  6889999999999999


Q ss_pred             cCChHHHHHHHHhcc---CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHH
Q 038522          280 YGSIRSAYQLYRSML---KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQI  356 (590)
Q Consensus       280 ~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~  356 (590)
                      .|++++|.++|+++.   ..+..+++.++..+.+.|+ +++|..+++++.... +.+..++..+...+.+.|++++|..+
T Consensus       318 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  395 (597)
T 2xpi_A          318 RSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGE-KNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRY  395 (597)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCC-HHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHH
Confidence            999999999999984   3467789999999999999 999999999998653 55778889999999999999999999


Q ss_pred             HHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC
Q 038522          357 HAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP  433 (590)
Q Consensus       357 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p  433 (590)
                      ++.+.+..+. +..+++.++.+|.+.|++++|.++|+++.   ..+..+|+.++.+|.+.|++++|.++|+++.+.. +.
T Consensus       396 ~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~  473 (597)
T 2xpi_A          396 FSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QY  473 (597)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CC
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence            9999886543 67899999999999999999999999876   3477899999999999999999999999999863 44


Q ss_pred             cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc---CCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHH
Q 038522          434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKY---RILPR--AEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLW  506 (590)
Q Consensus       434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~  506 (590)
                      +..+|..++..+.+.|++++|.++|+++.+..   +..|+  ..++..++.+|.+.|++++|.+.++++ .. +.+..+|
T Consensus       474 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  553 (597)
T 2xpi_A          474 DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVH  553 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHH
Confidence            78999999999999999999999999998653   45677  789999999999999999999999998 33 4478899


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          507 SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      ..+..+|...|++++|.+.++++++++|+++.++..++.+|..
T Consensus       554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~  596 (597)
T 2xpi_A          554 TAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALEE  596 (597)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHhc
Confidence            9999999999999999999999999999999999999988753

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.97  E-value=1.3e-26  Score=226.13  Aligned_cols=373  Identities=12%  Similarity=0.064  Sum_probs=250.5

Q ss_pred             HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchH
Q 038522          139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDD  215 (590)
Q Consensus       139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~  215 (590)
                      ..+.+.|++++|...+..+.+.. +.+...+..+...+...|++++|...++...+   .+..+|..+..++.+.|++++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence            34455666666666666666542 23344555555566666666666666655432   234456666666666666666


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC
Q 038522          216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK  295 (590)
Q Consensus       216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  295 (590)
                      |.+.|+++.... +.+..++..+..++.+.|++++|...++.+.+.. +.+...+..+...+...|+             
T Consensus        86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~-------------  150 (388)
T 1w3b_A           86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGR-------------  150 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSC-------------
T ss_pred             HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccC-------------
Confidence            666666665432 2223345555555555555555555555555443 2223334444444444444             


Q ss_pred             CCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHH
Q 038522          296 TDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNAL  375 (590)
Q Consensus       296 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  375 (590)
                                         +++|...|+++.+.. +.+..++..+...+...|+++.|...++.+.+..+. +...+..+
T Consensus       151 -------------------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l  209 (388)
T 1w3b_A          151 -------------------LEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINL  209 (388)
T ss_dssp             -------------------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             -------------------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHH
Confidence                               444444444444331 222344444455555555555555555555554332 45566777


Q ss_pred             HHHHHhcCChHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCCh
Q 038522          376 IDMYAKSGEIADANRAFDEMG--DK-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLT  451 (590)
Q Consensus       376 ~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~  451 (590)
                      ...+...|++++|...|++..  .| +..++..+...+...|++++|...|+++.+.  .| +..++..+..++.+.|++
T Consensus       210 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~  287 (388)
T 1w3b_A          210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSV  287 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCH
Confidence            788888888888888888765  23 4667888889999999999999999999885  44 577888889999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038522          452 CEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNL  529 (590)
Q Consensus       452 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  529 (590)
                      ++|.+.++++.+.  .+.+..++..+...+.+.|++++|.+.++++ ...| +..++..+...+.+.|++++|+..++++
T Consensus       288 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  365 (388)
T 1w3b_A          288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999875  3456788889999999999999999999988 4445 5678888999999999999999999999


Q ss_pred             hcCCCCCcchHHHHHHHHHhcCC
Q 038522          530 FDMEPEKSVNYVVLSNIYTAAGA  552 (590)
Q Consensus       530 ~~~~p~~~~~~~~l~~~~~~~g~  552 (590)
                      ++..|+++.+|..++.++...|+
T Consensus       366 ~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          366 IRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HhhCCCCHHHHHhHHHHHHHccC
Confidence            99999999999999998887764

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=6.8e-26  Score=221.10  Aligned_cols=353  Identities=16%  Similarity=0.098  Sum_probs=299.1

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 038522          204 IGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSI  283 (590)
Q Consensus       204 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  283 (590)
                      ...+.+.|++++|.+.+..+.+.. +.+...+..+...+...|++++|...++...+.. +.+..++..+..+|.+.|++
T Consensus         6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~   83 (388)
T 1w3b_A            6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            455677888888888888777652 2334455556666777888888888888877764 56777888889999999999


Q ss_pred             HHHHHHHHhcc--CC-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhchhhhHhHHHHHHH
Q 038522          284 RSAYQLYRSML--KT-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICANVASLNLGRQIHAF  359 (590)
Q Consensus       284 ~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~  359 (590)
                      ++|...|+++.  .| +..+|..+...+...|+ +++|...|+++.+.  .|+. ..+..+...+...|++++|...+..
T Consensus        84 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGD-MEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC-SSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            99999998883  34 34568888899999999 99999999998876  4544 4566677788889999999999999


Q ss_pred             HHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cH
Q 038522          360 AFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-ND  435 (590)
Q Consensus       360 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~  435 (590)
                      +.+..+. +...+..+...+.+.|++++|...|+++.+  | +...|..+...+...|++++|...+++..+.  .| +.
T Consensus       161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~  237 (388)
T 1w3b_A          161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA  237 (388)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence            9987644 577889999999999999999999999873  3 4567888999999999999999999999885  45 57


Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHH
Q 038522          436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGA  512 (590)
Q Consensus       436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~  512 (590)
                      .++..+..++...|++++|.+.++++.+.   .| +..++..+...+.+.|++++|.+.|+++  ..+++..++..+...
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  314 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI  314 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHH
Confidence            88999999999999999999999999964   44 4778999999999999999999999998  335578899999999


Q ss_pred             HHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          513 CSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       513 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      +...|++++|+..++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus       315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  369 (388)
T 1w3b_A          315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS  369 (388)
T ss_dssp             HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999998754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=1.7e-28  Score=242.78  Aligned_cols=184  Identities=16%  Similarity=0.164  Sum_probs=168.5

Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCc---------hhhHHHHHHHHHhcCCCCchH
Q 038522           97 VSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRW---------LQGGRMIQGSIQKGRFVENLF  167 (590)
Q Consensus        97 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~  167 (590)
                      ..++.+|++|++.|++++|+++|++|.+.|++||..||+++|.+|++.+.         ++.|.++|++|.+.|+.||..
T Consensus        27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~  106 (501)
T 4g26_A           27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA  106 (501)
T ss_dssp             HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence            35778889999999999999999999999999999999999999886543         678899999999999999999


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhccCC----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhc
Q 038522          168 VKSALLDLYAKCGWIEDAWILFERIER----KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASV  243 (590)
Q Consensus       168 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~  243 (590)
                      +|+.||++|++.|++++|.++|++|.+    ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus       107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~  186 (501)
T 4g26_A          107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM  186 (501)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence            999999999999999999999998864    7899999999999999999999999999999999999999999999999


Q ss_pred             cCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhc
Q 038522          244 GGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKY  280 (590)
Q Consensus       244 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  280 (590)
                      +.|+.++|.+++++|.+.|..|+..||+.++..|+..
T Consensus       187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999988764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=3.5e-28  Score=240.57  Aligned_cols=214  Identities=9%  Similarity=0.092  Sum_probs=163.5

Q ss_pred             HHHHHHHHHHHHcCCCCCHh-hHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhc
Q 038522          113 ENALLVFSAMLRSGVRANQF-TYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFER  191 (590)
Q Consensus       113 ~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  191 (590)
                      ..+..+.+++.+.++.+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+...++      
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~------   80 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES------   80 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS------
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh------
Confidence            34556667777777765543 58889999999999999999999999999999999999999999887764321      


Q ss_pred             cCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHH
Q 038522          192 IERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTG  271 (590)
Q Consensus       192 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  271 (590)
                                      ...+..+.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus        81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn  144 (501)
T 4g26_A           81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG  144 (501)
T ss_dssp             ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence                            1234457788888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHhcCChHHHHHHHHhc----cCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhch
Q 038522          272 SLIDVYAKYGSIRSAYQLYRSM----LKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANV  347 (590)
Q Consensus       272 ~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~  347 (590)
                      .+|.+|++.|++++|.++|++|    ..||..+|+++|.+|++.|+ .++|.++|++|.+.|..|+..||+.++..++..
T Consensus       145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~-~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKN-ADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCC-HHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            8888888888877777777777    45677777777777777777 888888888888888888888888888887765


Q ss_pred             hh
Q 038522          348 AS  349 (590)
Q Consensus       348 ~~  349 (590)
                      +.
T Consensus       224 ~a  225 (501)
T 4g26_A          224 VA  225 (501)
T ss_dssp             HH
T ss_pred             cc
Confidence            43

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.5e-24  Score=217.55  Aligned_cols=440  Identities=9%  Similarity=-0.065  Sum_probs=283.0

Q ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHH
Q 038522           97 VSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLY  176 (590)
Q Consensus        97 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  176 (590)
                      ..|......+.+.|++++|+..|+++.+..  |+...+..+..++.+.|++++|...++.+.+.+ +.+..++..+..+|
T Consensus         7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence            345566677777888888888888887754  677777777777777777777777777777654 33445666666666


Q ss_pred             HhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHH
Q 038522          177 AKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQ  253 (590)
Q Consensus       177 ~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  253 (590)
                      ...|++++|...|+++..   ++......++..+........+.+.+..+...+..|+...+..-......         
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---------  154 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK---------  154 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC----------------------------------
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh---------
Confidence            666666666666665543   12233333333333333333333333333322222222221111000000         


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCC-ccchHHHHHHHHh---cCCChHHHHHHHHHHHH--
Q 038522          254 IHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTD-IISCTALISGFAR---DDNHSKEAFDLFKDMIL--  327 (590)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~l~~~~~~---~~~~~~~a~~~~~~~~~--  327 (590)
                             ....|+......    +..........   ..+..|+ ...+......+..   .|+ +++|...|+++.+  
T Consensus       155 -------~~~~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~  219 (514)
T 2gw1_A          155 -------QENLPSVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPES-YDKADESFTKAARLF  219 (514)
T ss_dssp             ---------CCCCHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTH-HHHHHHHHHHHHHHH
T ss_pred             -------ccCCchhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhcc-HHHHHHHHHHHHHHh
Confidence                   001111111110    11000000000   0001111 2223333333333   566 8888888888776  


Q ss_pred             ---cCCCC--------CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522          328 ---KKMGI--------DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG  396 (590)
Q Consensus       328 ---~~~~p--------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  396 (590)
                         ....|        +...+..+...+...|+++.|...++.+.+..+.  ...+..+...|...|++++|...++++.
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~  297 (514)
T 2gw1_A          220 EEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKAL  297 (514)
T ss_dssp             HHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred             hhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence               31122        2345666777788888889999888888887655  7778888888999999999999888876


Q ss_pred             C---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhH
Q 038522          397 D---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEH  473 (590)
Q Consensus       397 ~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  473 (590)
                      +   .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...
T Consensus       298 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~  374 (514)
T 2gw1_A          298 KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEV  374 (514)
T ss_dssp             TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHH
T ss_pred             hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHH
Confidence            3   355678888888999999999999999988752 335677888888889999999999999998865  2334677


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhc-CCCC---C----HhHHHHHHHHHHh---cCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522          474 FSCVVDLFARRGQLESAYNMIRQM-NIKP---T----ASLWSAILGACSI---YGNTSLGELAARNLFDMEPEKSVNYVV  542 (590)
Q Consensus       474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~~~~  542 (590)
                      +..+...+.+.|++++|...++++ ...|   +    ...+..+...+..   .|++++|...++++++..|.++.++..
T Consensus       375 ~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~  454 (514)
T 2gw1_A          375 PNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIG  454 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            888888999999999999999887 2222   2    2378888888888   899999999999999999988889999


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          543 LSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       543 l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ++.+|...|++++|.+.++++.+...
T Consensus       455 la~~~~~~g~~~~A~~~~~~a~~~~~  480 (514)
T 2gw1_A          455 LAQMKLQQEDIDEAITLFEESADLAR  480 (514)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence            99999999999999999998887654

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-23  Score=213.57  Aligned_cols=448  Identities=10%  Similarity=-0.069  Sum_probs=302.4

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHhccCCC--CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHH
Q 038522           64 NLHLSTKVIIFYAKVGDVLSARKAFDRMPE--RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRAC  141 (590)
Q Consensus        64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~  141 (590)
                      ....+..+...+.+.|++++|+..|+++.+  |+..+|..+..++.+.|++++|+..++++.+.+ +.+...+..+...+
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence            345677888999999999999999999875  888899999999999999999999999999864 34567888899999


Q ss_pred             hccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC----CCcchHHHHHHHHHhcCCchHHH
Q 038522          142 ARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER----KDVVSWNAMIGGLAMQGFNDDSF  217 (590)
Q Consensus       142 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~  217 (590)
                      ...|++++|...++.+.+.+. ++......++..+........+.+.+..+..    ++...+..-..............
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVT  162 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhH
Confidence            999999999999999998763 3444444445444443333333333322221    11111111111111111111122


Q ss_pred             HHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh---cCChHHHHHHHHhcc
Q 038522          218 WLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAK---YGSIRSAYQLYRSML  294 (590)
Q Consensus       218 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~  294 (590)
                      .+...+......+.                ...          ...+.+...+......+..   .|++++|...|+++.
T Consensus       163 ~~~~~~~~~~~~~~----------------~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  216 (514)
T 2gw1_A          163 SMASFFGIFKPELT----------------FAN----------YDESNEADKELMNGLSNLYKRSPESYDKADESFTKAA  216 (514)
T ss_dssp             HHHHHHTTSCCCCC----------------CSS----------CCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCHHHH----------------HHH----------hcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHH
Confidence            22111111111110                000          0001112222222222222   444555555444442


Q ss_pred             C----------------C-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHH
Q 038522          295 K----------------T-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIH  357 (590)
Q Consensus       295 ~----------------~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~  357 (590)
                      .                + +...+..+...+...|+ +++|...++++.+..  |+...+..+...+...|+++.|...+
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~  293 (514)
T 2gw1_A          217 RLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND-PLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF  293 (514)
T ss_dssp             HHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC-HHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred             HHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            2                0 12345555566666666 777777777776653  33666666777777777777777777


Q ss_pred             HHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc
Q 038522          358 AFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN  434 (590)
Q Consensus       358 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~  434 (590)
                      +.+.+..+. +...+..+...|...|++++|...|+++.+   .+...+..+...+...|++++|...++++.+.. +.+
T Consensus       294 ~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~  371 (514)
T 2gw1_A          294 DKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEA  371 (514)
T ss_dssp             HHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTC
T ss_pred             HHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccC
Confidence            777665433 566778888899999999999999988752   356688888999999999999999999998752 335


Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHh---cCChHHHHHHHHhc-CCCC-CHhH
Q 038522          435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFAR---RGQLESAYNMIRQM-NIKP-TASL  505 (590)
Q Consensus       435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~-~~~p-~~~~  505 (590)
                      ...+..+...+...|++++|...++++.+...-.++    ...+..+...+..   .|++++|.+.++++ ...| +..+
T Consensus       372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~  451 (514)
T 2gw1_A          372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA  451 (514)
T ss_dssp             SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence            678888899999999999999999998865322222    3388899999999   99999999999998 3334 5678


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHH
Q 038522          506 WSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLS  544 (590)
Q Consensus       506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  544 (590)
                      +..+...+...|++++|...+++++++.|.++..+..+.
T Consensus       452 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  490 (514)
T 2gw1_A          452 KIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAIT  490 (514)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            889999999999999999999999999998888877663

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.92  E-value=8.2e-23  Score=208.63  Aligned_cols=423  Identities=11%  Similarity=0.017  Sum_probs=203.4

Q ss_pred             ccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHH
Q 038522           96 VVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDL  175 (590)
Q Consensus        96 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  175 (590)
                      ...|..+...+.+.|++++|++.|+++.+.. +.+...+..+...+.+.|++++|...++.+.+.+ +.+..++..+..+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            3456667777888888888888888887753 3456677777777778888888888888887764 4456677778888


Q ss_pred             HHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHc------CCCCChhhHHHHHHHhccCCChh
Q 038522          176 YAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQ------GMKPDCFTLGSILRASVGGIELM  249 (590)
Q Consensus       176 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~~~~~  249 (590)
                      +...|++++|...|+.+. .+....+..+..+...+....|...++.+...      ...|+......    +....+.+
T Consensus       103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~  177 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLAS----FFGIFDSH  177 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHH----HHHTSCHH
T ss_pred             HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHH----HHHhcChH
Confidence            888888888888886442 22222233344455555566777777777543      11233222222    22222222


Q ss_pred             HHHHHHHHHHHhCCCCChh-HHHHHHHHHHhc--------CChHHHHHHHHhccCCCcc----------chHHHHHHHHh
Q 038522          250 KISQIHDLIIKLGLESSNK-LTGSLIDVYAKY--------GSIRSAYQLYRSMLKTDII----------SCTALISGFAR  310 (590)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~----------~~~~l~~~~~~  310 (590)
                      .+...+....  ...+... ....+...+...        |++++|..+|+++...++.          ++..+...+..
T Consensus       178 ~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~  255 (537)
T 3fp2_A          178 LEVSSVNTSS--NYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFL  255 (537)
T ss_dssp             HHHHTSCCCC--SSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcc--ccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHh
Confidence            2221111110  0011111 222222222111        2445555555544322111          23333334444


Q ss_pred             cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHH
Q 038522          311 DDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANR  390 (590)
Q Consensus       311 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  390 (590)
                      .++ +++|...+++..+.  .|+...+..+...+...|+++.|...+..+.+..+. +.                     
T Consensus       256 ~~~-~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~---------------------  310 (537)
T 3fp2_A          256 KNN-LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YP---------------------  310 (537)
T ss_dssp             TTC-HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CH---------------------
T ss_pred             ccc-HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CH---------------------
Confidence            444 55555555554443  233344444444444444444444444444443322 23                     


Q ss_pred             HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC
Q 038522          391 AFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR  470 (590)
Q Consensus       391 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  470 (590)
                                .+|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+
T Consensus       311 ----------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~  377 (537)
T 3fp2_A          311 ----------PTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTL  377 (537)
T ss_dssp             ----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC
T ss_pred             ----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCC
Confidence                      344444455555555555555555544431 112344444444555555555555555555443  1122


Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-------CHhHHHHHHHHHHhc----------CCchHHHHHHHHHhcC
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-------TASLWSAILGACSIY----------GNTSLGELAARNLFDM  532 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~  532 (590)
                      ...+..+...+...|++++|.+.++++ ...|       ....+......+...          |++++|+..++++++.
T Consensus       378 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  457 (537)
T 3fp2_A          378 PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL  457 (537)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHh
Confidence            334444455555555555555555444 0000       111122223333344          5555555555555555


Q ss_pred             CCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          533 EPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       533 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .|+++.++..++.+|...|++++|.+.++++.+
T Consensus       458 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  490 (537)
T 3fp2_A          458 DPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI  490 (537)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            555555555555555555555555555555444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.92  E-value=8.6e-22  Score=196.25  Aligned_cols=343  Identities=11%  Similarity=0.022  Sum_probs=253.0

Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHH
Q 038522          196 DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLID  275 (590)
Q Consensus       196 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  275 (590)
                      +...+..+...+.+.|++++|+.+|+++.+.. +.+..++..+..++...|++++|...++.+.+.+ +.+..++..+..
T Consensus        25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            44567777788888888888888888887653 4456777777777888888888888888877765 445667777777


Q ss_pred             HHHhcCChHHHHHHHHhccCCCc------cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhh
Q 038522          276 VYAKYGSIRSAYQLYRSMLKTDI------ISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVAS  349 (590)
Q Consensus       276 ~~~~~g~~~~a~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~  349 (590)
                      +|.+.|++++|...|+++...++      ..+..+...+..                        ..+......+...|+
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------------------------~~~~~~a~~~~~~~~  158 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEM------------------------QRLRSQALNAFGSGD  158 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHTC
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH------------------------HHHHHHHHHHHHcCC
Confidence            77777777777777777643322      233333222110                        011122334556677


Q ss_pred             hHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHH
Q 038522          350 LNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKM  426 (590)
Q Consensus       350 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m  426 (590)
                      ++.|...++.+.+..+. +...+..+..+|.+.|++++|...|+++.+   .+..+|..+...+...|++++|+..|+++
T Consensus       159 ~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  237 (450)
T 2y4t_A          159 YTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVREC  237 (450)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            77777777777665433 567778888888888999988888888763   46678888899999999999999999998


Q ss_pred             HHcCCCCc-HHHHHHH------------HHHhhccCChHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChH
Q 038522          427 KHEGMVPN-DVTFLSL------------LFACSHTGLTCEGWELFTDMINKYRILPR-----AEHFSCVVDLFARRGQLE  488 (590)
Q Consensus       427 ~~~g~~p~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~  488 (590)
                      .+.  .|+ ...+..+            ...+...|++++|...|+++.+.   .|+     ...+..+..++.+.|+++
T Consensus       238 ~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~  312 (450)
T 2y4t_A          238 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPV  312 (450)
T ss_dssp             HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred             HHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence            875  453 4444443            77888999999999999999875   444     447888899999999999


Q ss_pred             HHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH------------HHhcC---
Q 038522          489 SAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI------------YTAAG---  551 (590)
Q Consensus       489 ~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~------------~~~~g---  551 (590)
                      +|++.++++ ...| +...|..+..+|...|++++|...+++++++.|+++.++..++.+            |...|   
T Consensus       313 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~  392 (450)
T 2y4t_A          313 EAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKR  392 (450)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSST
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCc
Confidence            999999998 4444 678899999999999999999999999999999999999999844            55556   


Q ss_pred             --ChHHHHHHHHH-hhhcCCcc
Q 038522          552 --AWDNARKTRKL-MEERSLRK  570 (590)
Q Consensus       552 --~~~~A~~~~~~-~~~~~~~~  570 (590)
                        +.+++.+.+++ ..+..+..
T Consensus       393 ~~~~~~~~~~y~~~~l~~~pd~  414 (450)
T 2y4t_A          393 NAKKQEIIKAYRKLALQWHPDN  414 (450)
T ss_dssp             TCCTTHHHHHHHHHHHHSCGGG
T ss_pred             cCCHHHHHHHHHHHHHHhCCCC
Confidence              56677887776 44444433

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=5.9e-21  Score=190.17  Aligned_cols=366  Identities=9%  Similarity=0.016  Sum_probs=254.2

Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHH
Q 038522          163 VENLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSIL  239 (590)
Q Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll  239 (590)
                      +.+...+..+...+.+.|++++|..+|+++.+   .+..+|..+..++...|++++|...|+++.+.+ +.+...+..+.
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  101 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG  101 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence            45677899999999999999999999998764   467789999999999999999999999999875 44677888999


Q ss_pred             HHhccCCChhHHHHHHHHHHHhCCCCCh---hHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChH
Q 038522          240 RASVGGIELMKISQIHDLIIKLGLESSN---KLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSK  316 (590)
Q Consensus       240 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  316 (590)
                      ..+.+.|++++|...++.+.+.. +.+.   ..+..+...+...+.                   ..+...+...|+ ++
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~-------------------~~~a~~~~~~~~-~~  160 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRL-------------------RSQALNAFGSGD-YT  160 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHTC-HH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHH-------------------HHHHHHHHHcCC-HH
Confidence            99999999999999999998754 3333   555555444222111                   112223334455 55


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522          317 EAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG  396 (590)
Q Consensus       317 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  396 (590)
                      +|+..|+++.+.. +.+...+..+...+...|+++.|...++.+.+..+ .+..++..+..+|...|++++|...|+++.
T Consensus       161 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  238 (450)
T 2y4t_A          161 AAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECL  238 (450)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5655555555432 23444555555556666666666666666555432 245566666777777777777777776664


Q ss_pred             C--C-CcchHHHH------------HHHHHhcCCchHHHHHHHHHHHcCCCCc-----HHHHHHHHHHhhccCChHHHHH
Q 038522          397 D--K-NVISWTSL------------IAGYAKHGYGHEAIELYKKMKHEGMVPN-----DVTFLSLLFACSHTGLTCEGWE  456 (590)
Q Consensus       397 ~--~-~~~~~~~l------------~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~~~~~~a~~  456 (590)
                      +  | +...+..+            ...+...|++++|...|+++.+.  .|+     ...+..+..++.+.|++++|..
T Consensus       239 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~  316 (450)
T 2y4t_A          239 KLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIR  316 (450)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             HhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            2  3 22233333            77888888999999999988874  454     3467777888888899999999


Q ss_pred             HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-HhHHHHHHHH------------HHhcC-----
Q 038522          457 LFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-ASLWSAILGA------------CSIYG-----  517 (590)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-~~~~~~l~~~------------~~~~~-----  517 (590)
                      .++++.+.  .+.+...+..+..+|...|++++|.+.++++ ...|+ ...+..+..+            |...|     
T Consensus       317 ~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~  394 (450)
T 2y4t_A          317 VCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNA  394 (450)
T ss_dssp             HHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTC
T ss_pred             HHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccC
Confidence            99888864  2335788888888999999999999999888 55664 4455555532            33333     


Q ss_pred             CchHHHHHHHH-HhcCCCCCcc----------hHHHHHHHHHhcCChHHH
Q 038522          518 NTSLGELAARN-LFDMEPEKSV----------NYVVLSNIYTAAGAWDNA  556 (590)
Q Consensus       518 ~~~~a~~~~~~-~~~~~p~~~~----------~~~~l~~~~~~~g~~~~A  556 (590)
                      +.+++.+.+++ +++..|++..          .+..+..+|...|+.+.+
T Consensus       395 ~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r  444 (450)
T 2y4t_A          395 KKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMR  444 (450)
T ss_dssp             CTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence            66788888886 6777775422          344555666666655443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.89  E-value=1.1e-20  Score=192.83  Aligned_cols=417  Identities=10%  Similarity=-0.029  Sum_probs=277.9

Q ss_pred             cccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHH
Q 038522           30 PSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGY  106 (590)
Q Consensus        30 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~  106 (590)
                      ...+..+...+.+.|++++|...|+.+++.. +.++.++..+..+|.+.|++++|+..|+++.+   .+..+|..+..++
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~  103 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            4567777778888888888888888888775 55777788888888888888888888887654   3456777777888


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC------CCCchHHHHHHHHHHHhcC
Q 038522          107 AQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGR------FVENLFVKSALLDLYAKCG  180 (590)
Q Consensus       107 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~  180 (590)
                      ...|++++|+..|+.+..   .|+..  ...+..+...+....+...++.+....      ..|+.    ..+..+....
T Consensus       104 ~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~~  174 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGIF  174 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHTS
T ss_pred             HHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHhc
Confidence            888888888888863321   22221  122334444555667777777775531      12322    2333445566


Q ss_pred             ChHHHHHHHhccCCCCcc---hHHHHHHHHHh--------cCCchHHHHHHHHHHHcCCCCC--------hhhHHHHHHH
Q 038522          181 WIEDAWILFERIERKDVV---SWNAMIGGLAM--------QGFNDDSFWLFRSMMRQGMKPD--------CFTLGSILRA  241 (590)
Q Consensus       181 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~--------~~~~~~ll~~  241 (590)
                      +.+.+...+......+..   ....+...+..        .|++++|..+++++.+.  .|+        ..++..+...
T Consensus       175 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~  252 (537)
T 3fp2_A          175 DSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIF  252 (537)
T ss_dssp             CHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHH
Confidence            666666666665543332   22222222211        24677777777777654  333        2235555566


Q ss_pred             hccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc---CCCccchHHHHHHHHhcCCChHHH
Q 038522          242 SVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSML---KTDIISCTALISGFARDDNHSKEA  318 (590)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a  318 (590)
                      +...|+++.|...++.+.+..  |+...+..+...+...|++++|...|+++.   ..+..++..+...+...|+ +++|
T Consensus       253 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A  329 (537)
T 3fp2_A          253 HFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQD-YKNA  329 (537)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHH
T ss_pred             HHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCC-HHHH
Confidence            677777888888887777764  336677777777777788888888777763   2345567777777777777 8888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-
Q 038522          319 FDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD-  397 (590)
Q Consensus       319 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-  397 (590)
                      ...+++..+.. +.+...+..+...+...|+++.|...++.+.+..+. +...+..+...+...|++++|...|+++.+ 
T Consensus       330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  407 (537)
T 3fp2_A          330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRL  407 (537)
T ss_dssp             HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            88888777653 234456777777778888888888888887776533 566777888888888999999888888752 


Q ss_pred             ----C----CcchHHHHHHHHHhc----------CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHH
Q 038522          398 ----K----NVISWTSLIAGYAKH----------GYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFT  459 (590)
Q Consensus       398 ----~----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~  459 (590)
                          +    ....+..+...+...          |++++|...+++..+.. +.+...+..+...+...|++++|.+.|+
T Consensus       408 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~  486 (537)
T 3fp2_A          408 EEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFE  486 (537)
T ss_dssp             HHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence                1    111244445667777          89999999999988752 3367788888889999999999999999


Q ss_pred             HHHhh
Q 038522          460 DMINK  464 (590)
Q Consensus       460 ~~~~~  464 (590)
                      +..+.
T Consensus       487 ~al~~  491 (537)
T 3fp2_A          487 DSAIL  491 (537)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98865

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=1.6e-18  Score=166.78  Aligned_cols=320  Identities=11%  Similarity=0.005  Sum_probs=169.8

Q ss_pred             cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHH
Q 038522          197 VVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDV  276 (590)
Q Consensus       197 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  276 (590)
                      +..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|+++.|...++.+.+.. +.+...+..+...
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            3456666777777777777777777776653 3345566666666666677777777776666653 3344555666666


Q ss_pred             HHhcCChHHHHHHHHhccCCCc---c---chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhh
Q 038522          277 YAKYGSIRSAYQLYRSMLKTDI---I---SCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASL  350 (590)
Q Consensus       277 ~~~~g~~~~a~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~  350 (590)
                      +...|++++|...|+++...++   .   .+..+.                  ....      ...+......+...|++
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~------------------~~~~------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV------------------KADE------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH------------------HHHH------HHHHHHHHHHHHHTTCH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHH------------------HHHH------HHHHHHHHHHHHHccCH
Confidence            6666666666666655533222   1   111110                  0000      00011122334444555


Q ss_pred             HhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 038522          351 NLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMK  427 (590)
Q Consensus       351 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  427 (590)
                      +.|...++.+.+..+. +...+..+...+...|++++|...++++.+   .+...+..+...+...|++++|...+++..
T Consensus       137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  215 (359)
T 3ieg_A          137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECL  215 (359)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5555555554444322 344555555566666666666666655542   234455555566666666666666666655


Q ss_pred             HcCCCC-cHHHHH------------HHHHHhhccCChHHHHHHHHHHHhhcCCCCC-h----hHHHHHHHHHHhcCChHH
Q 038522          428 HEGMVP-NDVTFL------------SLLFACSHTGLTCEGWELFTDMINKYRILPR-A----EHFSCVVDLFARRGQLES  489 (590)
Q Consensus       428 ~~g~~p-~~~~~~------------~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~----~~~~~l~~~~~~~g~~~~  489 (590)
                      +.  .| +...+.            .+...+...|++++|...++++.+.   .|+ .    ..+..+...+...|++++
T Consensus       216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~  290 (359)
T 3ieg_A          216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVE  290 (359)
T ss_dssp             HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHH
Confidence            53  22 222221            1133455566666666666666543   222 1    123334555566666666


Q ss_pred             HHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          490 AYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       490 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      |.+.+++. ...| +...+..+...+...|++++|...++++++++|+++.++..+..++.
T Consensus       291 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          291 AIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            66666655 2223 44555556666666666666666666666666655555555555443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.85  E-value=1.6e-18  Score=166.81  Aligned_cols=306  Identities=11%  Similarity=0.032  Sum_probs=237.3

Q ss_pred             hhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcc--CC-CccchHHHHHHH
Q 038522          232 CFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSML--KT-DIISCTALISGF  308 (590)
Q Consensus       232 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~  308 (590)
                      ...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+++.  .| +...+..+...+
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~   81 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence            4556667777888888888888888888765 4556777778888888888888888888773  23 445677777777


Q ss_pred             HhcCCChHHHHHHHHHHHHcCCCC---CHH-HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC
Q 038522          309 ARDDNHSKEAFDLFKDMILKKMGI---DDV-ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGE  384 (590)
Q Consensus       309 ~~~~~~~~~a~~~~~~~~~~~~~p---~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  384 (590)
                      ...|+ +++|...+++..+.  .|   +.. .+..+...       .                ....+..+...+...|+
T Consensus        82 ~~~~~-~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~-------~----------------~~~~~~~~a~~~~~~~~  135 (359)
T 3ieg_A           82 LKQGK-LDEAEDDFKKVLKS--NPSEQEEKEAESQLVKA-------D----------------EMQRLRSQALDAFDGAD  135 (359)
T ss_dssp             HHHTC-HHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHHTTC
T ss_pred             HHcCC-hHHHHHHHHHHHhc--CCcccChHHHHHHHHHH-------H----------------HHHHHHHHHHHHHHccC
Confidence            77887 88888888887754  34   221 11111110       0                01122345678889999


Q ss_pred             hHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHH
Q 038522          385 IADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDM  461 (590)
Q Consensus       385 ~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  461 (590)
                      +++|...++++.+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+++.
T Consensus       136 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999998763   466788899999999999999999999999852 447888999999999999999999999999


Q ss_pred             HhhcCCCCC-hhHHH------------HHHHHHHhcCChHHHHHHHHhc-CCCCCH-----hHHHHHHHHHHhcCCchHH
Q 038522          462 INKYRILPR-AEHFS------------CVVDLFARRGQLESAYNMIRQM-NIKPTA-----SLWSAILGACSIYGNTSLG  522 (590)
Q Consensus       462 ~~~~~~~~~-~~~~~------------~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-----~~~~~l~~~~~~~~~~~~a  522 (590)
                      .+.   .|+ ...+.            .+...+.+.|++++|.+.++++ ...|+.     ..+..+...+...|++++|
T Consensus       215 ~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  291 (359)
T 3ieg_A          215 LKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA  291 (359)
T ss_dssp             HHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             Hhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence            975   343 33332            2366789999999999999998 434443     2345577889999999999


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +..++++++..|+++.++..++.+|...|++++|.+.++++.+..+
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p  337 (359)
T 3ieg_A          292 IRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE  337 (359)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999999999999988654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=4.1e-18  Score=161.91  Aligned_cols=287  Identities=13%  Similarity=0.056  Sum_probs=201.3

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhccC---CCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038522          264 ESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK---TDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLM  340 (590)
Q Consensus       264 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~l  340 (590)
                      +.+..++..+...+...|++++|.++|+++..   .+...+..+...+...++ +++|..+++++.+.. +.+...+..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNK-ANELFYLSHKLVDLY-PSNPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhh-HHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            33444455555555555666666666655521   223344445555555666 666666666665542 2234455555


Q ss_pred             HHHHhchh-hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCc
Q 038522          341 LNICANVA-SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYG  416 (590)
Q Consensus       341 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~  416 (590)
                      ...+...| +++.|...++.+.+..+. +...+..+...+...|++++|...|+++.+   .+...+..+...+...|++
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  175 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS  175 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence            55566666 666666666666655432 455677788888888888888888887752   3456677788888889999


Q ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcC-------CCCChhHHHHHHHHHHhcCChHH
Q 038522          417 HEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYR-------ILPRAEHFSCVVDLFARRGQLES  489 (590)
Q Consensus       417 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~  489 (590)
                      ++|...+++..+.. +.+...+..+...+...|++++|...++++.+...       .+.....+..+...|...|++++
T Consensus       176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  254 (330)
T 3hym_B          176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE  254 (330)
T ss_dssp             HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence            99999999888752 33677888888888899999999999988876421       12335688888999999999999


Q ss_pred             HHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChH
Q 038522          490 AYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY-TAAGAWD  554 (590)
Q Consensus       490 A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~  554 (590)
                      |.+.++++ .. +.+...+..+...+...|++++|...++++++..|+++..+..++.++ ...|+.+
T Consensus       255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence            99999887 33 335677888888999999999999999999999999999999999888 4556543

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.83  E-value=9.5e-16  Score=160.92  Aligned_cols=251  Identities=10%  Similarity=-0.006  Sum_probs=120.4

Q ss_pred             ccccccccCChHHHHHHhhhC-CCCC---CCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhc
Q 038522            3 IVRANFKTGQLKQALKFSLSC-PDTL---LDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKV   78 (590)
Q Consensus         3 l~~~~~~~g~~~~a~~~~~~~-~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~   78 (590)
                      .+++|...|.+.+|+++|+++ ....   -+....+.++.+..+. +.....+....+...       ....+...+...
T Consensus       991 ~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d~~eIA~Iai~l 1062 (1630)
T 1xi4_A          991 TVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------DAPDIANIAISN 1062 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------cHHHHHHHHHhC
Confidence            457788899999999999998 2211   2334445555554444 334444433333211       122244455556


Q ss_pred             CChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHH
Q 038522           79 GDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQ  158 (590)
Q Consensus        79 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  158 (590)
                      |.+++|..+|++... .....+.++.   ..+++++|.++.++.      -+..+|..+..++...|++++|...|... 
T Consensus      1063 glyEEAf~IYkKa~~-~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA- 1131 (1630)
T 1xi4_A         1063 ELFEEAFAIFRKFDV-NTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA- 1131 (1630)
T ss_pred             CCHHHHHHHHHHcCC-HHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc-
Confidence            666666666665431 1111111111   344455555554433      12444555555555555555555555332 


Q ss_pred             hcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHH
Q 038522          159 KGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLG  236 (590)
Q Consensus       159 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  236 (590)
                           .|...|..++.++.+.|++++|.++|....+  ++....+.++.+|++.+++++.....    .   .++...+.
T Consensus      1132 -----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~ 1199 (1630)
T 1xi4_A         1132 -----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQ 1199 (1630)
T ss_pred             -----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHH
Confidence                 3344444455555555555555555544332  22222233455555555444322221    1   23334444


Q ss_pred             HHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          237 SILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM  293 (590)
Q Consensus       237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  293 (590)
                      .+...|...|+++.|..+|...         ..|..+...|.+.|+++.|.+.+++.
T Consensus      1200 ~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A         1200 QVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred             HHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence            4555555555555555555542         24445555555555555555555544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=1.3e-17  Score=158.52  Aligned_cols=267  Identities=12%  Similarity=0.052  Sum_probs=229.5

Q ss_pred             CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHH
Q 038522          295 KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNA  374 (590)
Q Consensus       295 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  374 (590)
                      ..+...+..+...+...|+ +++|..+++++.... +.+...+..+...+...|+++.|...+..+.+..+. +...+..
T Consensus        19 ~~~~~~~~~~a~~~~~~g~-~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~   95 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCD-FKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA   95 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence            3456677888888889999 999999999998764 344556667788889999999999999999987644 6778888


Q ss_pred             HHHHHHhcC-ChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCC
Q 038522          375 LIDMYAKSG-EIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGL  450 (590)
Q Consensus       375 l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~  450 (590)
                      +...+...| ++++|...|+++.+   .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence            999999999 99999999998764   356689999999999999999999999999863 3345677778899999999


Q ss_pred             hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC----------CCCHhHHHHHHHHHHhcCCc
Q 038522          451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI----------KPTASLWSAILGACSIYGNT  519 (590)
Q Consensus       451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----------~p~~~~~~~l~~~~~~~~~~  519 (590)
                      +++|.+.++++.+.  .+.+...+..+...+...|++++|...++++ ..          +.+..++..+...+...|++
T Consensus       175 ~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          175 SKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             HHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            99999999999864  2335788999999999999999999999887 11          33457889999999999999


Q ss_pred             hHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          520 SLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       520 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      ++|+..++++++..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus       253 ~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  300 (330)
T 3hym_B          253 AEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR  300 (330)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred             HHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence            999999999999999999999999999999999999999999887654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.82  E-value=8e-15  Score=154.06  Aligned_cols=421  Identities=13%  Similarity=0.097  Sum_probs=310.2

Q ss_pred             CCcccHHHHHHHhhcccchhHHHHHHHHHHHhcC--CCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHH
Q 038522           28 LDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGY--ESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISG  105 (590)
Q Consensus        28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~  105 (590)
                      .++.--....+++...|.+.+|.++++..+-.+-  ..+....+.++...++. +..+.....+....-+   ...+...
T Consensus       983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~I 1058 (1630)
T 1xi4_A          983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANI 1058 (1630)
T ss_pred             cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHH
Confidence            3444556677888899999999999998884321  13456666677666665 4455555555554322   4457788


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHH
Q 038522          106 YAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDA  185 (590)
Q Consensus       106 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  185 (590)
                      +...|.+++|..+|++..     -.....+.++.   ..++++.|.++.+..      .+..+|..+..++...|++++|
T Consensus      1059 ai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A         1059 AISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred             HHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence            889999999999999852     12222233332   667888888888755      3467888999999999999999


Q ss_pred             HHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCC
Q 038522          186 WILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLES  265 (590)
Q Consensus       186 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  265 (590)
                      ...|.+.  .|...|..++.++.+.|++++|++.|...++..  +++...+.+..+|++.++++....+.    +   .+
T Consensus      1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~ 1193 (1630)
T 1xi4_A         1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GP 1193 (1630)
T ss_pred             HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CC
Confidence            9999775  577788899999999999999999999877654  44434445888899999888655543    1   44


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038522          266 SNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICA  345 (590)
Q Consensus       266 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~  345 (590)
                      +...+..+...|...|++++|..+|...     ..|..+...+++.|+ +++|.+.+++.      .+..+|..+..+|.
T Consensus      1194 n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge-~q~AIEaarKA------~n~~aWkev~~acv 1261 (1630)
T 1xi4_A         1194 NNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGE-YQAAVDGARKA------NSTRTWKEVCFACV 1261 (1630)
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCC-HHHHHHHHHHh------CCHHHHHHHHHHHh
Confidence            5667777999999999999999999986     489999999999999 99999999976      45688999999999


Q ss_pred             chhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC---CcchHHHHHHHHHhcCCchHHHHH
Q 038522          346 NVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK---NVISWTSLIAGYAKHGYGHEAIEL  422 (590)
Q Consensus       346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~  422 (590)
                      ..|++..|......     +..++..+..++..|.+.|.+++|+++++....-   ....|+-+...+++. ++++.++.
T Consensus      1262 e~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy-~peklmEh 1335 (1630)
T 1xi4_A         1262 DGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKF-KPQKMREH 1335 (1630)
T ss_pred             hhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhC-CHHHHHHH
Confidence            99999888876543     3335667778999999999999999999987643   334666666666664 34555554


Q ss_pred             HHHHHHcCC-CC------cHHHHHHHHHHhhccCChHHHHHH-------------HHHHHhhcCCCCChhHHHHHHHHHH
Q 038522          423 YKKMKHEGM-VP------NDVTFLSLLFACSHTGLTCEGWEL-------------FTDMINKYRILPRAEHFSCVVDLFA  482 (590)
Q Consensus       423 ~~~m~~~g~-~p------~~~~~~~ll~~~~~~~~~~~a~~~-------------~~~~~~~~~~~~~~~~~~~l~~~~~  482 (590)
                      ++-..+.+- +|      +...|.-+.-.|.+.|+++.|...             |.+..   .-..++..|...+..|.
T Consensus      1336 lk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i---~kv~n~elyykai~Fyl 1412 (1630)
T 1xi4_A         1336 LELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDII---TKVANVELYYRAIQFYL 1412 (1630)
T ss_pred             HHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHh---cccccHHHHHHHHHHHH
Confidence            444444332 22      456788888889999999988732             22222   12446777777777777


Q ss_pred             hcC---------------ChHHHHHHHHhcC
Q 038522          483 RRG---------------QLESAYNMIRQMN  498 (590)
Q Consensus       483 ~~g---------------~~~~A~~~~~~~~  498 (590)
                      ..+               +++++.++|.+.+
T Consensus      1413 ~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~ 1443 (1630)
T 1xi4_A         1413 EFKPLLLNDLLMVLSPRLDHTRAVNYFSKVK 1443 (1630)
T ss_pred             hhChHHHHHHHHHhhhcCChHHHHHHHHHcC
Confidence            666               8888888888663

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.81  E-value=3.7e-16  Score=156.85  Aligned_cols=365  Identities=10%  Similarity=0.003  Sum_probs=228.6

Q ss_pred             cCChHHHHHHHhccCC-CCcchHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc----CCChh
Q 038522          179 CGWIEDAWILFERIER-KDVVSWNAMIGGLAM----QGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVG----GIELM  249 (590)
Q Consensus       179 ~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~  249 (590)
                      .+++++|...|++..+ .+...+..|...|..    .+++++|.+.|++..+.|   +...+..+...+..    .++++
T Consensus        56 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~  132 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKA  132 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             CcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence            4444444444444332 233344444444444    455555555555554432   23333333334433    44555


Q ss_pred             HHHHHHHHHHHhCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhccC-CCccchHHHHHHHHh----cCCChHHHHH
Q 038522          250 KISQIHDLIIKLGLESSNKLTGSLIDVYAK----YGSIRSAYQLYRSMLK-TDIISCTALISGFAR----DDNHSKEAFD  320 (590)
Q Consensus       250 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~~a~~  320 (590)
                      +|...|+...+.|   +...+..|...|..    .++.++|.+.|++..+ .+...+..+...+..    .++ .++|..
T Consensus       133 ~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~-~~~A~~  208 (490)
T 2xm6_A          133 ESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERN-DAISAQ  208 (490)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC-HHHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcC-HHHHHH
Confidence            5555555555443   23344444555544    4556666666655532 233444445555544    455 666777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHhc----hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh----cCChHHHHHHH
Q 038522          321 LFKDMILKKMGIDDVILCLMLNICAN----VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK----SGEIADANRAF  392 (590)
Q Consensus       321 ~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~  392 (590)
                      .|++..+.|   +...+..+...+..    .++.+.|...++...+.+   ++..+..+..+|..    .+++++|..+|
T Consensus       209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~  282 (490)
T 2xm6_A          209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY  282 (490)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence            776666543   33344444444443    566777777777666654   34455666667776    78899999998


Q ss_pred             HhcCC-CCcchHHHHHHHHHhc-----CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC---ChHHHHHHHHHHHh
Q 038522          393 DEMGD-KNVISWTSLIAGYAKH-----GYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG---LTCEGWELFTDMIN  463 (590)
Q Consensus       393 ~~~~~-~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~  463 (590)
                      ++..+ .+...+..+...|...     +++++|+..|++..+.|   +...+..+...+...|   ++++|.+.|++..+
T Consensus       283 ~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~  359 (490)
T 2xm6_A          283 RKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA  359 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence            88764 4556777777888776     89999999999988864   3455666666666655   78899999999886


Q ss_pred             hcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCCC
Q 038522          464 KYRILPRAEHFSCVVDLFAR----RGQLESAYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       464 ~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~  535 (590)
                      .    .+...+..+...|..    .+++++|.++|++.-...++..+..+...|..    .+++++|...++++.+.+|+
T Consensus       360 ~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          360 K----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             T----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             C----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            4    367788888888888    88999999999988222357778888888887    79999999999999988843


Q ss_pred             ---CcchHHHHHHHHHhcCChHH--HHHHHHHh
Q 038522          536 ---KSVNYVVLSNIYTAAGAWDN--ARKTRKLM  563 (590)
Q Consensus       536 ---~~~~~~~l~~~~~~~g~~~~--A~~~~~~~  563 (590)
                         ++.+...++.++....+..+  |.+++++.
T Consensus       436 ~~~~~~a~~~l~~~~~~~~~~a~~~a~~~~~~~  468 (490)
T 2xm6_A          436 LFGTENRNITEKKLTAKQLQQAELLSQQYIEKY  468 (490)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CcCCHHHHHHHHhcCHhHHHHHHHHHHHHHHHH
Confidence               77777777776654332222  44555443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.80  E-value=8.8e-16  Score=155.76  Aligned_cols=412  Identities=8%  Similarity=0.003  Sum_probs=270.0

Q ss_pred             CHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--CCcchHHHHHHHH
Q 038522          130 NQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--KDVVSWNAMIGGL  207 (590)
Q Consensus       130 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~  207 (590)
                      +...|..++.. .+.|+++.|..+++.+.+. .+.+...|..++..+.+.|++++|..+|++...  |+...|..++...
T Consensus        12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~~   89 (530)
T 2ooe_A           12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSYV   89 (530)
T ss_dssp             CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHHH
Confidence            56677777773 6678888888888888876 355666788888888888888888888888765  5555666665432


Q ss_pred             -HhcCCchHHHH----HHHHHHHc-CCCCC-hhhHHHHHHHhcc---------CCChhHHHHHHHHHHHhCCCCChhHHH
Q 038522          208 -AMQGFNDDSFW----LFRSMMRQ-GMKPD-CFTLGSILRASVG---------GIELMKISQIHDLIIKLGLESSNKLTG  271 (590)
Q Consensus       208 -~~~~~~~~a~~----~~~~m~~~-~~~p~-~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~~  271 (590)
                       ...|+.+.|.+    +|+..... |..|+ ...|...+....+         .|+++.|..+|+..++........+|.
T Consensus        90 ~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~  169 (530)
T 2ooe_A           90 RETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWR  169 (530)
T ss_dssp             HHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHH
T ss_pred             HHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHH
Confidence             34567766655    55554432 44333 3344444443322         466777777777766521111112222


Q ss_pred             HHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHH------HcC---CCCCH--------
Q 038522          272 SLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI------LKK---MGIDD--------  334 (590)
Q Consensus       272 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~------~~~---~~p~~--------  334 (590)
                      .........|. ..+..++.                 ...++ +..|..++++..      +..   +.|+.        
T Consensus       170 ~~~~~e~~~~~-~~~~~~l~-----------------~~~~~-~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~  230 (530)
T 2ooe_A          170 DYNKYEEGINI-HLAKKMIE-----------------DRSRD-YMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQV  230 (530)
T ss_dssp             HHHHHHHHHCH-HHHHHHHH-----------------TTHHH-HHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHH
T ss_pred             HHHHHHHhhch-hHHHHHHH-----------------HhhHH-HHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHH
Confidence            22111100110 00111110                 01223 555665555421      111   23331        


Q ss_pred             HHHHHHHHHHhc----hhhh----HhHHHHHHHHHHhCCCcchhHHHHHHHHHHh-------cCChH-------HHHHHH
Q 038522          335 VILCLMLNICAN----VASL----NLGRQIHAFAFKYQSSYDAAVGNALIDMYAK-------SGEIA-------DANRAF  392 (590)
Q Consensus       335 ~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~  392 (590)
                      ..|...+.....    .++.    ..+..+++.+....+ .++..+..++..+.+       .|+++       +|..+|
T Consensus       231 ~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~  309 (530)
T 2ooe_A          231 DMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY  309 (530)
T ss_dssp             HHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHH
Confidence            233333322111    1122    356677888777643 367788888888775       68987       899999


Q ss_pred             HhcCC---C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-H-HHHHHHHHHhhccCChHHHHHHHHHHHhhcC
Q 038522          393 DEMGD---K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-D-VTFLSLLFACSHTGLTCEGWELFTDMINKYR  466 (590)
Q Consensus       393 ~~~~~---~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  466 (590)
                      ++..+   | +...|..++..+.+.|++++|..+|+++.+.  .|+ . ..|..++..+.+.|++++|.++|++..+.  
T Consensus       310 ~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--  385 (530)
T 2ooe_A          310 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--  385 (530)
T ss_dssp             HHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--
Confidence            98874   3 4568888999999999999999999999984  564 3 47888888888999999999999999853  


Q ss_pred             CCCC-hhHHHHHHHH-HHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc----
Q 038522          467 ILPR-AEHFSCVVDL-FARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV----  538 (590)
Q Consensus       467 ~~~~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~----  538 (590)
                       .|+ ...+...+.. +...|++++|..+|++. ...| ++..|..++..+...|+.+.|..++++++...|.++.    
T Consensus       386 -~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~  464 (530)
T 2ooe_A          386 -ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGE  464 (530)
T ss_dssp             -TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHH
T ss_pred             -cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHH
Confidence             443 3333332222 34689999999999988 3334 5788999999999999999999999999998876655    


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          539 NYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       539 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      .|..++......|+.+.+.++.+++.+.-+
T Consensus       465 lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          465 IWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            777888888899999999999999887554

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.79  E-value=9.3e-18  Score=162.16  Aligned_cols=283  Identities=11%  Similarity=-0.023  Sum_probs=218.7

Q ss_pred             HHhcCChHHHHH-HHHhccC--C-----CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchh
Q 038522          277 YAKYGSIRSAYQ-LYRSMLK--T-----DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVA  348 (590)
Q Consensus       277 ~~~~g~~~~a~~-~~~~~~~--~-----~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~  348 (590)
                      +.-.|++++|.. .|++...  +     +...+..+...+...|+ +++|...|+++.+.. +.+...+..+...+...|
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGD-LPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTC-HHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence            334577788887 7776522  1     24567777888888888 888888888888763 445667778888888888


Q ss_pred             hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHH---------------HHHHH
Q 038522          349 SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTS---------------LIAGY  410 (590)
Q Consensus       349 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~---------------l~~~~  410 (590)
                      +++.|...++.+.+..+. +..++..+...|...|++++|...++++.+  | +...+..               .+..+
T Consensus       113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred             CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            999999888888887643 677888888899999999999999988763  2 2222211               13334


Q ss_pred             HhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 038522          411 AKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES  489 (590)
Q Consensus       411 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  489 (590)
                      ...|++++|...++++.+..... +..++..+...+...|++++|...++++.+.  .+.+...+..+...+...|++++
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~  269 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEE  269 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHH
Confidence            48899999999999999863211 4788999999999999999999999999875  23357889999999999999999


Q ss_pred             HHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC-----------cchHHHHHHHHHhcCChHHH
Q 038522          490 AYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK-----------SVNYVVLSNIYTAAGAWDNA  556 (590)
Q Consensus       490 A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~A  556 (590)
                      |.+.++++ ...| +...+..+...+...|++++|...+++++++.|++           +.+|..++.+|...|++++|
T Consensus       270 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          270 AVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            99999998 4344 57789999999999999999999999999988876           78899999999999999999


Q ss_pred             HHHHHHhh
Q 038522          557 RKTRKLME  564 (590)
Q Consensus       557 ~~~~~~~~  564 (590)
                      ..+++...
T Consensus       350 ~~~~~~~l  357 (368)
T 1fch_A          350 GAADARDL  357 (368)
T ss_dssp             HHHHTTCH
T ss_pred             HHhHHHHH
Confidence            99887543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=1.5e-17  Score=156.58  Aligned_cols=285  Identities=13%  Similarity=0.088  Sum_probs=110.6

Q ss_pred             hcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHH
Q 038522          178 KCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDL  257 (590)
Q Consensus       178 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  257 (590)
                      +.|++++|.++++++..|  .+|..++.++.+.|++++|++.|.+      .+|..+|..++.++...|++++|..+++.
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            456677777777777544  3777777777777777777777754      35666777777777777777777776666


Q ss_pred             HHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHH
Q 038522          258 IIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVIL  337 (590)
Q Consensus       258 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~  337 (590)
                      .++.  .+++.+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|. +++|..+|..+         ..|
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~-yeeA~~~Y~~a---------~n~  151 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKM-YDAAKLLYNNV---------SNF  151 (449)
T ss_dssp             ------------------------CHHHHTTTTTC---C----------------C-TTTHHHHHHHT---------TCH
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCC-HHHHHHHHHHh---------hhH
Confidence            6653  34466677777778888887777766653   556677777777777777 77777777765         357


Q ss_pred             HHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCch
Q 038522          338 CLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGH  417 (590)
Q Consensus       338 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  417 (590)
                      ..+..++.+.|+++.|.+.+..+      .++.+|..++.+|...|+++.|......+. .++.-...++..|.+.|+++
T Consensus       152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e  224 (449)
T 1b89_A          152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE  224 (449)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence            77777777777777777777766      256777777777777777777766655544 33333445777777888888


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHhh--ccCChHHHHHHHHHHHhhcCCCC------ChhHHHHHHHHHHhcCChHH
Q 038522          418 EAIELYKKMKHEGMVPNDVTFLSLLFACS--HTGLTCEGWELFTDMINKYRILP------RAEHFSCVVDLFARRGQLES  489 (590)
Q Consensus       418 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~  489 (590)
                      +|..+++...... +--...|+-+.-+++  +.++..+.++.|.   ++-+++|      +...|..++-.|..-++++.
T Consensus       225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~---~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~  300 (449)
T 1b89_A          225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW---SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDN  300 (449)
T ss_dssp             HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS---TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH---HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHH
Confidence            8888887776432 223334444433333  3333444444333   3224444      35567777888888888887


Q ss_pred             HHHHHHh
Q 038522          490 AYNMIRQ  496 (590)
Q Consensus       490 A~~~~~~  496 (590)
                      |...+-+
T Consensus       301 A~~tm~~  307 (449)
T 1b89_A          301 AIITMMN  307 (449)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            7765543

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.78  E-value=6.5e-17  Score=152.26  Aligned_cols=220  Identities=12%  Similarity=0.081  Sum_probs=53.4

Q ss_pred             hcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHH
Q 038522           77 KVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGS  156 (590)
Q Consensus        77 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  156 (590)
                      +.|++++|.+.++++..|  .+|..|..++.+.|++++|++.|.+.      +|..+|..++.++...|++++|..+++.
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            345555555555555333  25555555555555555555555431      3444555555555555555555555554


Q ss_pred             HHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHH
Q 038522          157 IQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLG  236 (590)
Q Consensus       157 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  236 (590)
                      .++.  .++..+.+.++.+|.+.|+++++.++++.   |+..+|+.+...|...|++++|...|..+         ..|.
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~  152 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG  152 (449)
T ss_dssp             ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence            4442  23344555555556666665555555532   44445555555555555555555555544         2455


Q ss_pred             HHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChH
Q 038522          237 SILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSK  316 (590)
Q Consensus       237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  316 (590)
                      .+..++.+.|++++|.+.+..+      .++.+|..++.+|...|+++.|......+. ..+.....++..|.+.|. ++
T Consensus       153 ~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~-~e  224 (449)
T 1b89_A          153 RLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY-FE  224 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC-HH
T ss_pred             HHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC-HH
Confidence            5555555555555555555544      144455555555555555555544433322 122222234444555555 55


Q ss_pred             HHHHHHHHHH
Q 038522          317 EAFDLFKDMI  326 (590)
Q Consensus       317 ~a~~~~~~~~  326 (590)
                      +|..+++..+
T Consensus       225 Eai~lLe~aL  234 (449)
T 1b89_A          225 ELITMLEAAL  234 (449)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            5555555443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.78  E-value=5.4e-15  Score=148.35  Aligned_cols=353  Identities=12%  Similarity=0.003  Sum_probs=290.1

Q ss_pred             CCcchHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc----CCChhHHHHHHHHHHHhCCCCC
Q 038522          195 KDVVSWNAMIGGLAM----QGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVG----GIELMKISQIHDLIIKLGLESS  266 (590)
Q Consensus       195 ~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~  266 (590)
                      .+...+..+...|..    .+++++|+..|++..+.|   +...+..+...+..    .++.++|...|+...+.|   +
T Consensus        37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~  110 (490)
T 2xm6_A           37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L  110 (490)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred             CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence            466677777777777    899999999999998764   45667777777777    899999999999999876   5


Q ss_pred             hhHHHHHHHHHHh----cCChHHHHHHHHhccCC-CccchHHHHHHHHh----cCCChHHHHHHHHHHHHcCCCCCHHHH
Q 038522          267 NKLTGSLIDVYAK----YGSIRSAYQLYRSMLKT-DIISCTALISGFAR----DDNHSKEAFDLFKDMILKKMGIDDVIL  337 (590)
Q Consensus       267 ~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~  337 (590)
                      ...+..|...|..    .+++++|...|++..+. +...+..+...|..    .++ .++|+..|++..+.|   +...+
T Consensus       111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d-~~~A~~~~~~a~~~~---~~~a~  186 (490)
T 2xm6_A          111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRD-YVMAREWYSKAAEQG---NVWSC  186 (490)
T ss_dssp             HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCC-HHHHHHHHHHHHHTT---CHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHCC---CHHHH
Confidence            5667778888888    78999999999998544 45667777777776    667 999999999998875   56666


Q ss_pred             HHHHHHHhc----hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCcchHHHHHH
Q 038522          338 CLMLNICAN----VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK----SGEIADANRAFDEMGD-KNVISWTSLIA  408 (590)
Q Consensus       338 ~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~  408 (590)
                      ..+...+..    .++.+.|...++...+.+   ++..+..+...|..    .+++++|..+|++..+ .+...+..+..
T Consensus       187 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~  263 (490)
T 2xm6_A          187 NQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGY  263 (490)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            777777766    789999999999998876   45677788888886    7899999999998764 46667777888


Q ss_pred             HHHh----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhcc-----CChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522          409 GYAK----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHT-----GLTCEGWELFTDMINKYRILPRAEHFSCVVD  479 (590)
Q Consensus       409 ~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  479 (590)
                      .+..    .+++++|+..|++..+.|   +...+..+...+...     +++++|...+++..+. +   +...+..+..
T Consensus       264 ~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~  336 (490)
T 2xm6_A          264 ILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGA  336 (490)
T ss_dssp             HHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred             HHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHH
Confidence            8887    899999999999998764   445666677777766     8999999999999875 2   4567778888


Q ss_pred             HHHhcC---ChHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh---
Q 038522          480 LFARRG---QLESAYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA---  549 (590)
Q Consensus       480 ~~~~~g---~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---  549 (590)
                      .|...|   ++++|+++|++.-...++..+..+...|..    .+++++|...++++.+.+  ++.++..|+.+|..   
T Consensus       337 ~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g  414 (490)
T 2xm6_A          337 IYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLG  414 (490)
T ss_dssp             HHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSS
T ss_pred             HHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCC
Confidence            888766   889999999998223567888899999888    899999999999999865  57899999999999   


Q ss_pred             -cCChHHHHHHHHHhhhcCCc
Q 038522          550 -AGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       550 -~g~~~~A~~~~~~~~~~~~~  569 (590)
                       .+++++|.+++++..+.+..
T Consensus       415 ~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          415 VERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             SCCCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCHHHHHHHHHHHHHCCCC
Confidence             89999999999999987743

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.77  E-value=3.3e-17  Score=158.29  Aligned_cols=282  Identities=11%  Similarity=-0.015  Sum_probs=196.5

Q ss_pred             cccccCChHHHHH-HhhhCCCCC---C--CcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcC
Q 038522            6 ANFKTGQLKQALK-FSLSCPDTL---L--DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVG   79 (590)
Q Consensus         6 ~~~~~g~~~~a~~-~~~~~~~~~---~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g   79 (590)
                      ++.-.|++++|+. .|++.....   |  +...+..+...+...|++++|...++.+++.. +.+..++..+..+|.+.|
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence            3455678899998 888772222   2  35678888999999999999999999999875 567888999999999999


Q ss_pred             ChHHHHHHhccCCC---CCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHh-hHHH---------------HHHH
Q 038522           80 DVLSARKAFDRMPE---RNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQF-TYSS---------------ALRA  140 (590)
Q Consensus        80 ~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~---------------ll~~  140 (590)
                      ++++|...|+...+   .+..+|..+...+...|++++|++.++++.+..  |+.. .+..               .+..
T Consensus       113 ~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (368)
T 1fch_A          113 QELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS  190 (368)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHH
T ss_pred             CHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHH
Confidence            99999999988654   466788889999999999999999999998854  3322 2211               2333


Q ss_pred             HhccCchhhHHHHHHHHHhcCCCC-chHHHHHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHH
Q 038522          141 CARMRWLQGGRMIQGSIQKGRFVE-NLFVKSALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDS  216 (590)
Q Consensus       141 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a  216 (590)
                      +...|++++|...++.+.+..... +..++..+...|...|++++|...|+++.+   .+..+|..+...+...|++++|
T Consensus       191 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          191 LLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHH
Confidence            447788888888888887764321 466777788888888888888888777653   3456677777777788888888


Q ss_pred             HHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCC----------ChhHHHHHHHHHHhcCChHHH
Q 038522          217 FWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLES----------SNKLTGSLIDVYAKYGSIRSA  286 (590)
Q Consensus       217 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a  286 (590)
                      .+.|+++.+.. +.+...+..+...+.+.|++++|...++.+.+.....          ...++..+..+|...|+.++|
T Consensus       271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            88887776653 3345666777777777777777777777776543111          145666677777777777777


Q ss_pred             HHHHH
Q 038522          287 YQLYR  291 (590)
Q Consensus       287 ~~~~~  291 (590)
                      ..+++
T Consensus       350 ~~~~~  354 (368)
T 1fch_A          350 GAADA  354 (368)
T ss_dssp             HHHHT
T ss_pred             HHhHH
Confidence            66654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.77  E-value=6.8e-17  Score=149.35  Aligned_cols=268  Identities=9%  Similarity=0.008  Sum_probs=181.5

Q ss_pred             HhcCChHHHHHHHHhccCCCc----cchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhH
Q 038522          278 AKYGSIRSAYQLYRSMLKTDI----ISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLG  353 (590)
Q Consensus       278 ~~~g~~~~a~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a  353 (590)
                      ...|+++.|+..++.....++    .....+..++...|+ ++.|+..++..    -.|+..++..+...+...++.+.|
T Consensus        10 ~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~-~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~~A   84 (291)
T 3mkr_A           10 FYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRK-YGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRDAI   84 (291)
T ss_dssp             HHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTC-HHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHHHH
T ss_pred             HHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCC-HHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHHHH
Confidence            344555555555444432221    122233445555555 55555444321    233444455555555555555555


Q ss_pred             HHHHHHHHHhCCCc-chhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 038522          354 RQIHAFAFKYQSSY-DAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV  432 (590)
Q Consensus       354 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~  432 (590)
                      ...++.+...+..| ++..+..+..++.+.|++++|.+.+++  ..+...+..++..+.+.|++++|...++++.+.  .
T Consensus        85 ~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~  160 (291)
T 3mkr_A           85 VAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ--D  160 (291)
T ss_dssp             HHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--C
T ss_pred             HHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--C
Confidence            55555555544322 455566777889999999999999998  456778888999999999999999999999886  4


Q ss_pred             CcHHHH---HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHH
Q 038522          433 PNDVTF---LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWS  507 (590)
Q Consensus       433 p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  507 (590)
                      |+....   ..++..+...|++++|..+|+++.+.  .+.+...++.+..++.+.|++++|.+.|+++ ...| ++.++.
T Consensus       161 p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~  238 (291)
T 3mkr_A          161 EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLI  238 (291)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            653221   12334444568999999999999976  3456888999999999999999999999997 4444 677888


Q ss_pred             HHHHHHHhcCCchH-HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522          508 AILGACSIYGNTSL-GELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTR  560 (590)
Q Consensus       508 ~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  560 (590)
                      .++..+...|+.++ +.+.++++++++|+++.+..    ...+.+.++++..-|
T Consensus       239 ~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          239 NLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence            88888889999875 67899999999998876654    344555555555433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.77  E-value=3.6e-17  Score=157.78  Aligned_cols=261  Identities=10%  Similarity=-0.027  Sum_probs=208.2

Q ss_pred             CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHH
Q 038522          297 DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALI  376 (590)
Q Consensus       297 ~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  376 (590)
                      +...+..+...+.+.|+ +++|...|+++++.. +.+...+..+...+...|+++.|...++.+.+..+. +...+..+.
T Consensus        64 ~~~~~~~~~~~~~~~g~-~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~  140 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGD-LPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALA  140 (365)
T ss_dssp             TCTTHHHHHHHHHHHTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCC-HHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHH
Confidence            34457777788888888 888888888887753 445677788888888888888888888888877543 577888889


Q ss_pred             HHHHhcCChHHHHHHHHhcCC--CC-----------cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-CcHHHHHHHH
Q 038522          377 DMYAKSGEIADANRAFDEMGD--KN-----------VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV-PNDVTFLSLL  442 (590)
Q Consensus       377 ~~~~~~~~~~~A~~~~~~~~~--~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll  442 (590)
                      ..|...|++++|...|+++.+  |+           ...+..+...+...|++++|...++++.+.... ++..++..+.
T Consensus       141 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          141 VSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            999999999999999988763  21           223344578889999999999999999986321 1588899999


Q ss_pred             HHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCch
Q 038522          443 FACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTS  520 (590)
Q Consensus       443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~  520 (590)
                      ..+...|++++|.+.++++.+.  .+.+..++..+..+|...|++++|++.|+++ ...| +..++..+...|...|+++
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~  298 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYR  298 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            9999999999999999999975  2345789999999999999999999999998 4445 5788999999999999999


Q ss_pred             HHHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522          521 LGELAARNLFDMEPE------------KSVNYVVLSNIYTAAGAWDNARKTRKL  562 (590)
Q Consensus       521 ~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  562 (590)
                      +|...+++++++.|.            +...|..++.++...|+.+.|.+..+.
T Consensus       299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999999988875            367899999999999999999888765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.77  E-value=4.6e-16  Score=155.80  Aligned_cols=385  Identities=11%  Similarity=-0.036  Sum_probs=196.6

Q ss_pred             CchHHHHHHHHHHHhcCChHHHHHHHhccCC-----------C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcC----
Q 038522          164 ENLFVKSALLDLYAKCGWIEDAWILFERIER-----------K-DVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQG----  227 (590)
Q Consensus       164 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----  227 (590)
                      .....|+.|...+...|+.++|++.|++..+           + ...+|+.+..+|...|++++|...+++.....    
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            3456788888888888888888887765421           1 23467777777777777777777777654320    


Q ss_pred             --CCC-ChhhHHHHHHHhc--cCCChhHHHHHHHHHHHhCCCCChhHHHHHHHH---HHhcCChHHHHHHHHhcc--CC-
Q 038522          228 --MKP-DCFTLGSILRASV--GGIELMKISQIHDLIIKLGLESSNKLTGSLIDV---YAKYGSIRSAYQLYRSML--KT-  296 (590)
Q Consensus       228 --~~p-~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~--~~-  296 (590)
                        ..+ ...++.....++.  ..+++++|...|++..+.. +.++..+..+..+   +...++.++|++.+++..  .| 
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~  207 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD  207 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc
Confidence              011 1233433333332  2345666666666666553 2233333333333   223344455555555442  12 


Q ss_pred             CccchHHHHHHHHh----cCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHH
Q 038522          297 DIISCTALISGFAR----DDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVG  372 (590)
Q Consensus       297 ~~~~~~~l~~~~~~----~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  372 (590)
                      +...+..+...+..    .++ .++|...+++..... +.+...+..+...+...|+++.|...+..+.+..+. +..++
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~-~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~  284 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEE-EGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLH  284 (472)
T ss_dssp             CHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHH
Confidence            22233333222222    123 445555555544432 223334444444555555555555555555444332 23333


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChH
Q 038522          373 NALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTC  452 (590)
Q Consensus       373 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~  452 (590)
                      ..+...|...+....+      .....      ........+.++.|...+++..+.. +.+..++..+...+...|+++
T Consensus       285 ~~lg~~y~~~~~~~~~------~~~~~------~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~  351 (472)
T 4g1t_A          285 CQIGCCYRAKVFQVMN------LRENG------MYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYE  351 (472)
T ss_dssp             HHHHHHHHHHHHHHHH------C------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhhh------HHHHH------HHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHH
Confidence            3333333211100000      00000      0000011223567888888877652 234556777888889999999


Q ss_pred             HHHHHHHHHHhhcCCCCChh----HHHHHHH-HHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHH
Q 038522          453 EGWELFTDMINKYRILPRAE----HFSCVVD-LFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAA  526 (590)
Q Consensus       453 ~a~~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~  526 (590)
                      +|.+.|++..+.   .|+..    .+..+.. .+...|++++|+..|++. .+.|+......         ....+..++
T Consensus       352 ~A~~~~~kaL~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~---------~~~~l~~~~  419 (472)
T 4g1t_A          352 EAEYYFQKEFSK---ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEK---------MKDKLQKIA  419 (472)
T ss_dssp             HHHHHHHHHHHS---CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHH---------HHHHHHHHH
T ss_pred             HHHHHHHHHHhc---CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHH---------HHHHHHHHH
Confidence            999999998854   33322    2233333 235678999999999887 66676543322         234456778


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCCCceEE
Q 038522          527 RNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGYSFL  577 (590)
Q Consensus       527 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  577 (590)
                      ++.++.+|.++.+|..|+.+|...|++++|++.+++..+.+...+...+|+
T Consensus       420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~  470 (472)
T 4g1t_A          420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWN  470 (472)
T ss_dssp             HHHHHHCC-CTTHHHHHHHHHHHHHHCC-----------------------
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcC
Confidence            888899999999999999999999999999999999999877666666663

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.76  E-value=1.2e-14  Score=147.38  Aligned_cols=412  Identities=9%  Similarity=0.034  Sum_probs=201.3

Q ss_pred             CCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC--CCccchHHHHH
Q 038522           27 LLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE--RNVVSWTAMIS  104 (590)
Q Consensus        27 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~li~  104 (590)
                      |-+...|..++.. .+.|+++.|..+++.+++.. +.+...|...+..+.+.|++++|..+|++...  |+...|...+.
T Consensus        10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~   87 (530)
T 2ooe_A           10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLS   87 (530)
T ss_dssp             TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            3455566666663 55667777777777776653 45566677777777777777777777776554  55555555554


Q ss_pred             HH-HhcCChHHHHH----HHHHHHHc-CCCC-CHhhHHHHHHHHhc---------cCchhhHHHHHHHHHhcCCCCchHH
Q 038522          105 GY-AQNGYDENALL----VFSAMLRS-GVRA-NQFTYSSALRACAR---------MRWLQGGRMIQGSIQKGRFVENLFV  168 (590)
Q Consensus       105 ~~-~~~~~~~~a~~----~~~~m~~~-~~~p-~~~~~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~  168 (590)
                      .. ...|+.+.|.+    +|++.... |..| +...|...+.....         .|+++.|..+|+..++....+....
T Consensus        88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~  167 (530)
T 2ooe_A           88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQL  167 (530)
T ss_dssp             HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHH
T ss_pred             HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHH
Confidence            22 23455555544    45544432 3332 33444444444332         4556666666666655211111122


Q ss_pred             HHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHH------HcC---CCCCh-------
Q 038522          169 KSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMM------RQG---MKPDC-------  232 (590)
Q Consensus       169 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~-------  232 (590)
                      |..........|. ..+..++.                 ...+++..|..++.++.      +..   ++|+.       
T Consensus       168 ~~~~~~~e~~~~~-~~~~~~l~-----------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~  229 (530)
T 2ooe_A          168 WRDYNKYEEGINI-HLAKKMIE-----------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ  229 (530)
T ss_dssp             HHHHHHHHHHHCH-HHHHHHHH-----------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred             HHHHHHHHHhhch-hHHHHHHH-----------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence            2221111000000 00111110                 01233444554444421      111   22321       


Q ss_pred             -hhHHHHHHHhcc----CCCh----hHHHHHHHHHHHhCCCCChhHHHHHHHHHHh-------cCChH-------HHHHH
Q 038522          233 -FTLGSILRASVG----GIEL----MKISQIHDLIIKLGLESSNKLTGSLIDVYAK-------YGSIR-------SAYQL  289 (590)
Q Consensus       233 -~~~~~ll~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~a~~~  289 (590)
                       ..|...+.....    .++.    ..+..+|++.+... +.+..+|..++..+.+       .|+++       +|..+
T Consensus       230 ~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~  308 (530)
T 2ooe_A          230 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANI  308 (530)
T ss_dssp             HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHH
Confidence             122222211111    1121    24445555555442 3345555555555543       45554       45555


Q ss_pred             HHhccC---C-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCC
Q 038522          290 YRSMLK---T-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQS  365 (590)
Q Consensus       290 ~~~~~~---~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  365 (590)
                      |++...   | +...|..++..+.+.|+ +++|..+|+++++.  .|+.                               
T Consensus       309 ~~~Al~~~~p~~~~l~~~~~~~~~~~g~-~~~A~~~~~~al~~--~p~~-------------------------------  354 (530)
T 2ooe_A          309 YERAISTLLKKNMLLYFAYADYEESRMK-YEKVHSIYNRLLAI--EDID-------------------------------  354 (530)
T ss_dssp             HHHHTTTTCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHS--SSSC-------------------------------
T ss_pred             HHHHHHHhCcccHHHHHHHHHHHHhcCC-HHHHHHHHHHHhCc--cccC-------------------------------
Confidence            555432   1 23344444444444554 55555555555442  2221                               


Q ss_pred             CcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCc---chHHHHHH-HHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHH
Q 038522          366 SYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNV---ISWTSLIA-GYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLS  440 (590)
Q Consensus       366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~l~~-~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~  440 (590)
                        ...+|..++..+.+.|++++|..+|++..+.++   ..|..... .+...|++++|..+|++..+.  .| +...+..
T Consensus       355 --~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~--~p~~~~~~~~  430 (530)
T 2ooe_A          355 --PTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLA  430 (530)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH--HTTCHHHHHH
T ss_pred             --chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH--CCCCHHHHHH
Confidence              112445555555555555555555555543111   11111111 123467777777777777664  34 4666777


Q ss_pred             HHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          441 LLFACSHTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                      ++..+.+.|+.++|..+|++........|+  ...|...+......|+.+.+..+++++
T Consensus       431 ~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          431 YIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            777777777777777777777754222332  336666677777777777777777766

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.75  E-value=1.3e-16  Score=151.25  Aligned_cols=258  Identities=11%  Similarity=-0.085  Sum_probs=186.4

Q ss_pred             HHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 038522          302 TALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK  381 (590)
Q Consensus       302 ~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  381 (590)
                      ..+...+...++ +++|..+|+++.+.. +.+...+..+...+...|+++.|...++.+.+..+. +...+..+...|..
T Consensus        25 ~~~a~~~~~~~~-~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~  101 (327)
T 3cv0_A           25 MEEGLSMLKLAN-LAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTN  101 (327)
T ss_dssp             HHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcc-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHH
Confidence            334444444454 555555555554432 223344444555555555555555555555554322 45556666777777


Q ss_pred             cCChHHHHHHHHhcCC--C-CcchHHHH--------------HH-HHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 038522          382 SGEIADANRAFDEMGD--K-NVISWTSL--------------IA-GYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLF  443 (590)
Q Consensus       382 ~~~~~~A~~~~~~~~~--~-~~~~~~~l--------------~~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~  443 (590)
                      .|++++|...++++.+  | +...+..+              .. .+...|++++|...++++.+.. +.+...+..+..
T Consensus       102 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~  180 (327)
T 3cv0_A          102 EHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGV  180 (327)
T ss_dssp             TTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence            7777777777776542  2 22222222              22 3677889999999999998863 346788899999


Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC-CCHhHHHHHHHHHHhcCCchH
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIK-PTASLWSAILGACSIYGNTSL  521 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~~~~~~~~~  521 (590)
                      .+...|++++|.+.++++.+.  .+.+...+..+...+...|++++|.+.++++ ... .+...+..+...+...|++++
T Consensus       181 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~  258 (327)
T 3cv0_A          181 LYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL  258 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence            999999999999999999875  2335788999999999999999999999998 333 457788999999999999999


Q ss_pred             HHHHHHHHhcCCCC------------CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          522 GELAARNLFDMEPE------------KSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       522 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      |...++++++..|.            ++..+..++.+|...|++++|..++++..+
T Consensus       259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  314 (327)
T 3cv0_A          259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE  314 (327)
T ss_dssp             HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred             HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            99999999999997            688999999999999999999999886544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.74  E-value=1.4e-16  Score=147.21  Aligned_cols=248  Identities=10%  Similarity=-0.009  Sum_probs=202.6

Q ss_pred             HHHHhcCCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC
Q 038522          306 SGFARDDNHSKEAFDLFKDMILKKMGIDD--VILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSG  383 (590)
Q Consensus       306 ~~~~~~~~~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  383 (590)
                      ......|+ +..|+..++....  ..|+.  .....+.+++...|+++.|...++.    ..+|+...+..+...+...+
T Consensus         7 ~~~~~~g~-y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            7 KNAFYIGS-YQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHTTC-HHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHH-HHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence            34556788 9999999887643  34544  3445677899999999999876543    24567888889999999999


Q ss_pred             ChHHHHHHHHhcC----CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHH
Q 038522          384 EIADANRAFDEMG----DK-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELF  458 (590)
Q Consensus       384 ~~~~A~~~~~~~~----~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  458 (590)
                      +.++|.+.++++.    .| +...+..+...+...|++++|++.+++      +.+...+..+...+.+.|++++|.+.+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            9999999999864    24 445677778999999999999999987      457788889999999999999999999


Q ss_pred             HHHHhhcCCCCChhH---HHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038522          459 TDMINKYRILPRAEH---FSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDME  533 (590)
Q Consensus       459 ~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  533 (590)
                      +++.+.   .|+...   ...++..+...|++++|..+|+++  ..+.++..++.+..++...|++++|+..++++++.+
T Consensus       154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~  230 (291)
T 3mkr_A          154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD  230 (291)
T ss_dssp             HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            999976   455321   123344555669999999999999  445678889999999999999999999999999999


Q ss_pred             CCCcchHHHHHHHHHhcCChHH-HHHHHHHhhhcCCc
Q 038522          534 PEKSVNYVVLSNIYTAAGAWDN-ARKTRKLMEERSLR  569 (590)
Q Consensus       534 p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~  569 (590)
                      |+++.++..++.++...|+.++ +.++++++.+..+.
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~  267 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRS  267 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999987 57899988876653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.74  E-value=2.4e-16  Score=152.00  Aligned_cols=232  Identities=13%  Similarity=0.020  Sum_probs=195.7

Q ss_pred             CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHH
Q 038522          333 DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAG  409 (590)
Q Consensus       333 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~  409 (590)
                      +...+......+.+.|+++.|..+++.+.+..+. +...+..+...|.+.|++++|...|+++.+   .+..+|..+...
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~  142 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVS  142 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            3445778888999999999999999999988654 688899999999999999999999998863   456789999999


Q ss_pred             HHhcCCchHHHHHHHHHHHcCCCCcH-----------HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHH
Q 038522          410 YAKHGYGHEAIELYKKMKHEGMVPND-----------VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVV  478 (590)
Q Consensus       410 ~~~~~~~~~a~~~~~~m~~~g~~p~~-----------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~  478 (590)
                      +...|++++|...++++.+.  .|+.           ..+..+...+...|++++|.+.++++.+.....++...+..+.
T Consensus       143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            99999999999999999875  4432           2233457788899999999999999997632222578899999


Q ss_pred             HHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 038522          479 DLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA  556 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A  556 (590)
                      ..|...|++++|++.++++ .. +.+..+|..+..++...|++++|+..++++++..|+++.++..++.+|...|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            9999999999999999998 33 446788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcC
Q 038522          557 RKTRKLMEERS  567 (590)
Q Consensus       557 ~~~~~~~~~~~  567 (590)
                      .+.++++.+..
T Consensus       301 ~~~~~~al~~~  311 (365)
T 4eqf_A          301 VSNFLTALSLQ  311 (365)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHhC
Confidence            99999998754

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.72  E-value=1e-14  Score=146.00  Aligned_cols=382  Identities=9%  Similarity=-0.052  Sum_probs=237.2

Q ss_pred             CCHhhHHHHHHHHhccCchhhHHHHHHHHHhc-----C---CCCchHHHHHHHHHHHhcCChHHHHHHHhccCC------
Q 038522          129 ANQFTYSSALRACARMRWLQGGRMIQGSIQKG-----R---FVENLFVKSALLDLYAKCGWIEDAWILFERIER------  194 (590)
Q Consensus       129 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------  194 (590)
                      .....|+.+-..+...|++++|.+.++...+.     +   .+....+|+.+..+|...|++++|...+++..+      
T Consensus        49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~  128 (472)
T 4g1t_A           49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS  128 (472)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence            34567888888899999999999999987652     1   223456899999999999999999998877642      


Q ss_pred             -C----CcchHHHHHHHHHh--cCCchHHHHHHHHHHHcCCCCC-hhhHHHHHHH---hccCCChhHHHHHHHHHHHhCC
Q 038522          195 -K----DVVSWNAMIGGLAM--QGFNDDSFWLFRSMMRQGMKPD-CFTLGSILRA---SVGGIELMKISQIHDLIIKLGL  263 (590)
Q Consensus       195 -~----~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~-~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~  263 (590)
                       +    ...++..+..++..  .+++++|++.|++..+.  .|+ ...+..+...   +...++.++|.+.++..++.. 
T Consensus       129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-  205 (472)
T 4g1t_A          129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-  205 (472)
T ss_dssp             CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-
T ss_pred             cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-
Confidence             1    22345555555554  45789999999999876  454 3344333333   455678888999999988875 


Q ss_pred             CCChhHHHHHHHHHHh----cCChHHHHHHHHhcc---CCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCC-HH
Q 038522          264 ESSNKLTGSLIDVYAK----YGSIRSAYQLYRSML---KTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGID-DV  335 (590)
Q Consensus       264 ~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~-~~  335 (590)
                      +.+..++..+...+..    .|++++|.+.+++..   ..+..++..+...+...++ +++|...+++..+.  .|+ ..
T Consensus       206 p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~-~~~A~~~~~~al~~--~p~~~~  282 (472)
T 4g1t_A          206 PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDE-PDKAIELLKKALEY--IPNNAY  282 (472)
T ss_dssp             SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHH--STTCHH
T ss_pred             CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCc-hHHHHHHHHHHHHh--CCChHH
Confidence            4455566555555544    467889999998873   3355678888999999999 99999999999876  444 34


Q ss_pred             HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC---CCCcchHHHHHHHHHh
Q 038522          336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG---DKNVISWTSLIAGYAK  412 (590)
Q Consensus       336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~l~~~~~~  412 (590)
                      .+..+...+...+.......                ...........+.++.|...+++..   ..+..++..+...+..
T Consensus       283 ~~~~lg~~y~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~  346 (472)
T 4g1t_A          283 LHCQIGCCYRAKVFQVMNLR----------------ENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHAL  346 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHHC----------------------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhHH----------------HHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHH
Confidence            44444433322211111000                0001111112234567777777664   3456788999999999


Q ss_pred             cCCchHHHHHHHHHHHcCCCCcHH--HHHHHHH-HhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 038522          413 HGYGHEAIELYKKMKHEGMVPNDV--TFLSLLF-ACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES  489 (590)
Q Consensus       413 ~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  489 (590)
                      .|++++|++.|++..+....|...  .+..+.. .....|++++|+..|++..+   +.|+.......         ...
T Consensus       347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~~~---------~~~  414 (472)
T 4g1t_A          347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKEKM---------KDK  414 (472)
T ss_dssp             TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHHHH---------HHH
T ss_pred             hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHHHH---------HHH
Confidence            999999999999999864333221  2222322 23477899999999999884   45654332222         233


Q ss_pred             HHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHH
Q 038522          490 AYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLS  544 (590)
Q Consensus       490 A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  544 (590)
                      +.+++++.  ..+.++.+|..+...|...|++++|++.|+++++++|.+|.+...+|
T Consensus       415 l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G  471 (472)
T 4g1t_A          415 LQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG  471 (472)
T ss_dssp             HHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence            34444444  22446789999999999999999999999999999998888776554

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.70  E-value=2.1e-15  Score=142.86  Aligned_cols=260  Identities=10%  Similarity=-0.026  Sum_probs=208.4

Q ss_pred             CcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHH
Q 038522           29 DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISG  105 (590)
Q Consensus        29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~  105 (590)
                      +...+..+...+...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+.+   .+..+|..+...
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHH
Confidence            55677888899999999999999999999886 55788899999999999999999999998764   456788889999


Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHH--------------HH--HhccCchhhHHHHHHHHHhcCCCCchHHH
Q 038522          106 YAQNGYDENALLVFSAMLRSGVRANQFTYSSAL--------------RA--CARMRWLQGGRMIQGSIQKGRFVENLFVK  169 (590)
Q Consensus       106 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll--------------~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  169 (590)
                      +...|++++|++.++++.+..  |+.......+              ..  +...|++++|...++.+.+.. +.+..++
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  175 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLH  175 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHH
Confidence            999999999999999998753  3333222222              33  677889999999999998874 4467788


Q ss_pred             HHHHHHHHhcCChHHHHHHHhccCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCC
Q 038522          170 SALLDLYAKCGWIEDAWILFERIER---KDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGI  246 (590)
Q Consensus       170 ~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~  246 (590)
                      ..+...|...|++++|...++++.+   .+...|..+...+...|++++|.+.+++..+.. +.+..++..+...+...|
T Consensus       176 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g  254 (327)
T 3cv0_A          176 ASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMS  254 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhc
Confidence            8889999999999999999987753   356678888889999999999999999887763 345677788888888889


Q ss_pred             ChhHHHHHHHHHHHhCCCC-----------ChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          247 ELMKISQIHDLIIKLGLES-----------SNKLTGSLIDVYAKYGSIRSAYQLYRSM  293 (590)
Q Consensus       247 ~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~  293 (590)
                      ++++|...++.+.+.....           +..++..+..++.+.|+.++|..+++..
T Consensus       255 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          255 QYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             cHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            9999998888887764321           4667778888888888888888887655

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.68  E-value=2.3e-15  Score=132.82  Aligned_cols=195  Identities=15%  Similarity=0.056  Sum_probs=157.1

Q ss_pred             CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHH
Q 038522          366 SYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSL  441 (590)
Q Consensus       366 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l  441 (590)
                      ++++..+..+...+.+.|++++|...|++..+   .+...|..+...+.+.|++++|+..+++..+.  .| +...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence            34666778888889999999999999998764   35568888999999999999999999999986  45 57788888


Q ss_pred             HHHhhcc-----------CChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHH
Q 038522          442 LFACSHT-----------GLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSA  508 (590)
Q Consensus       442 l~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~  508 (590)
                      ..++...           |++++|+..+++..+.   .| +...+..+..+|...|++++|+..|+++ ....++..+..
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  156 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSA  156 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHH
Confidence            8899999           9999999999999965   45 4778889999999999999999999998 22277888999


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +..++...|++++|+..++++++.+|+++.++..++.++...|++++|.+.+++...
T Consensus       157 la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          157 LAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999987543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.66  E-value=3.8e-17  Score=166.10  Aligned_cols=127  Identities=10%  Similarity=0.071  Sum_probs=113.3

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHhccCC-------CCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHH
Q 038522           64 NLHLSTKVIIFYAKVGDVLSARKAFDRMP-------ERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSS  136 (590)
Q Consensus        64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  136 (590)
                      -..+|+++|++|++.|++++|.++|++|.       .||+.|||+||++|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            45689999999999999999999997753       49999999999999999999999999999999999999999999


Q ss_pred             HHHHHhccCch-hhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHh
Q 038522          137 ALRACARMRWL-QGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFE  190 (590)
Q Consensus       137 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  190 (590)
                      +|.++++.|+. +.|.+++++|.+.|+.||..+|+.+++...+.+-++.+.++..
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P  260 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKP  260 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCC
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCc
Confidence            99999999985 7899999999999999999999999887766544444444433

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.66  E-value=5.3e-17  Score=165.12  Aligned_cols=127  Identities=14%  Similarity=0.109  Sum_probs=108.0

Q ss_pred             CCchHHHHHHHHHHHhcCChHHHHHHHhccC-------CCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhH
Q 038522          163 VENLFVKSALLDLYAKCGWIEDAWILFERIE-------RKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTL  235 (590)
Q Consensus       163 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  235 (590)
                      ..-..+|++||++||+.|++++|.++|++|.       .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            3345688889999999999999999886653       479999999999999999999999999999999999999999


Q ss_pred             HHHHHHhccCCCh-hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHH
Q 038522          236 GSILRASVGGIEL-MKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQL  289 (590)
Q Consensus       236 ~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  289 (590)
                      +++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv  258 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHh
Confidence            9999999998874 78899999999999999999999988777665444444444

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=8.7e-15  Score=133.34  Aligned_cols=218  Identities=13%  Similarity=0.050  Sum_probs=168.2

Q ss_pred             HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C----C----cchHHH
Q 038522          336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K----N----VISWTS  405 (590)
Q Consensus       336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~----~----~~~~~~  405 (590)
                      .+..+...+...|+++.|..+++.+.+..  .+...+..+...|...|++++|...+++..+  |    +    ...|..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34445555556666666666666666655  4566667777777777777777777776652  1    1    457777


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhc
Q 038522          406 LIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARR  484 (590)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~  484 (590)
                      +...+...|++++|...+++..+.  .|+..       .+...|++++|...++.+...   .| +...+..+...+...
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~-------~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTAD-------ILTKLRNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCHH-------HHHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc--CchhH-------HHHHHhHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHh
Confidence            888888889999999999888874  45533       355667889999999888853   34 466788888889999


Q ss_pred             CChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 038522          485 GQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKL  562 (590)
Q Consensus       485 g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  562 (590)
                      |++++|.+.++++ .. +.+...+..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.+++
T Consensus       153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            9999999999888 33 345778888889999999999999999999999998999999999999999999999999998


Q ss_pred             hhhcC
Q 038522          563 MEERS  567 (590)
Q Consensus       563 ~~~~~  567 (590)
                      +.+..
T Consensus       233 a~~~~  237 (258)
T 3uq3_A          233 ARTKD  237 (258)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            87754

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.5e-14  Score=131.75  Aligned_cols=232  Identities=9%  Similarity=-0.049  Sum_probs=175.7

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCc--c----hhHHHH
Q 038522          301 CTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSY--D----AAVGNA  374 (590)
Q Consensus       301 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~~~  374 (590)
                      +..+...+...|+ +++|...|++..+..  .+...+..+...+...|+++.|...+..+.+..+..  +    ..++..
T Consensus         8 ~~~~g~~~~~~~~-~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            8 EKAEGNKFYKARQ-FDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHTTC-HHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcc-HHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            4444555555566 666666666666554  555566666666666666666666666665543221  1    567788


Q ss_pred             HHHHHHhcCChHHHHHHHHhcCC--CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCCh
Q 038522          375 LIDMYAKSGEIADANRAFDEMGD--KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLT  451 (590)
Q Consensus       375 l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~  451 (590)
                      +...|.+.|++++|...|++..+  |+       ...+...|++++|...++++...  .| +...+..+...+...|++
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~  155 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDW  155 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCH
Confidence            88888999999999999988764  33       24466678899999999999874  45 566788888899999999


Q ss_pred             HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038522          452 CEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNL  529 (590)
Q Consensus       452 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  529 (590)
                      ++|...++++.+.  .+.+...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|...++++
T Consensus       156 ~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  233 (258)
T 3uq3_A          156 PNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA  233 (258)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            9999999999875  2345788899999999999999999999998 3334 5778899999999999999999999999


Q ss_pred             hcCC------CCCcchHHHHHHH
Q 038522          530 FDME------PEKSVNYVVLSNI  546 (590)
Q Consensus       530 ~~~~------p~~~~~~~~l~~~  546 (590)
                      +++.      |.+...+..+..+
T Consensus       234 ~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          234 RTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             HHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HHhChhhcCCCchHHHHHHHHHh
Confidence            9988      8777766666543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.61  E-value=4.6e-14  Score=129.96  Aligned_cols=239  Identities=10%  Similarity=-0.024  Sum_probs=185.4

Q ss_pred             CCChHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHH
Q 038522          312 DNHSKEAFDLFKDMILKKMG---IDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADA  388 (590)
Q Consensus       312 ~~~~~~a~~~~~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  388 (590)
                      ++ +++|+..++++.+....   .+...+..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|
T Consensus        19 ~~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A   96 (275)
T 1xnf_A           19 LQ-QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAA   96 (275)
T ss_dssp             HH-HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             ch-HHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHH
Confidence            45 78888888888765321   13456677777888888888888888888877644 677888899999999999999


Q ss_pred             HHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhc
Q 038522          389 NRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKY  465 (590)
Q Consensus       389 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  465 (590)
                      ...|+++.+   .+...+..+...+...|++++|...++++.+.  .|+.......+..+...|++++|...+++.... 
T Consensus        97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-  173 (275)
T 1xnf_A           97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-  173 (275)
T ss_dssp             HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence            999998763   35678899999999999999999999999885  565444445555567779999999999888875 


Q ss_pred             CCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC-----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522          466 RILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT-----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN  539 (590)
Q Consensus       466 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  539 (590)
                       .+++... ..++..+...++.++|++.+++. ...|+     ...+..+...+...|++++|...++++++.+|.+.. 
T Consensus       174 -~~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~-  250 (275)
T 1xnf_A          174 -SDKEQWG-WNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV-  250 (275)
T ss_dssp             -SCCCSTH-HHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH-
T ss_pred             -CCcchHH-HHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH-
Confidence             2333333 34777788888999999999887 43342     567888999999999999999999999999996644 


Q ss_pred             HHHHHHHHHhcCChHHHHHHH
Q 038522          540 YVVLSNIYTAAGAWDNARKTR  560 (590)
Q Consensus       540 ~~~l~~~~~~~g~~~~A~~~~  560 (590)
                        ..+.++...|++++|++.+
T Consensus       251 --~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          251 --EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             --HHHHHHHHHHHHHHC----
T ss_pred             --HHHHHHHHHHHHHhhHHHH
Confidence              3467888999999998876

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.61  E-value=1.4e-13  Score=135.74  Aligned_cols=373  Identities=10%  Similarity=0.014  Sum_probs=200.6

Q ss_pred             HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh---HHHHHHHhccCCCCcchHHHHHHHHHhcC----
Q 038522          139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI---EDAWILFERIERKDVVSWNAMIGGLAMQG----  211 (590)
Q Consensus       139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~~----  211 (590)
                      ..+.+.|++++|..+|+...+.|.   ...+..|...|...|+.   ++|...|++..+.+...+..+...+...+    
T Consensus        11 ~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~   87 (452)
T 3e4b_A           11 NEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE   87 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred             HHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence            334455666666666666665542   22233344455556666   77777777776556666666666555554    


Q ss_pred             -CchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCCh---hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh----
Q 038522          212 -FNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIEL---MKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSI----  283 (590)
Q Consensus       212 -~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----  283 (590)
                       ++++|+..|++..+.|...   .+..+...+...+..   ..+.+.+......|.   ......|...|...+.+    
T Consensus        88 ~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~  161 (452)
T 3e4b_A           88 AEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHL  161 (452)
T ss_dssp             HHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGH
T ss_pred             cCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCH
Confidence             5677888887777765322   444444444444332   233444444444442   34444555666666533    


Q ss_pred             HHHHHHHHhccCCCccchHHHHHHHHhcC---CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHH
Q 038522          284 RSAYQLYRSMLKTDIISCTALISGFARDD---NHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFA  360 (590)
Q Consensus       284 ~~a~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  360 (590)
                      +.+..+++.....++..+..+...+...|   + .++|+..|++..+.| .++                           
T Consensus       162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~-~~~A~~~~~~aa~~g-~~~---------------------------  212 (452)
T 3e4b_A          162 DDVERICKAALNTTDICYVELATVYQKKQQPEQ-QAELLKQMEAGVSRG-TVT---------------------------  212 (452)
T ss_dssp             HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHH-HHHHHHHHHHHHHTT-CSC---------------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc-HHHHHHHHHHHHHCC-CHH---------------------------
Confidence            33333444444444445555555555555   4 555666666555554 222                           


Q ss_pred             HHhCCCcchhHHHHHHHHHHhc----CChHHHHHHHHhcCCCCcchHHHHHHH-H--HhcCCchHHHHHHHHHHHcCCCC
Q 038522          361 FKYQSSYDAAVGNALIDMYAKS----GEIADANRAFDEMGDKNVISWTSLIAG-Y--AKHGYGHEAIELYKKMKHEGMVP  433 (590)
Q Consensus       361 ~~~~~~~~~~~~~~l~~~~~~~----~~~~~A~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~g~~p  433 (590)
                              ...+..+..+|...    +++++|..+|++....++..+..|... +  ...+++++|+..|++..+.|   
T Consensus       213 --------a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---  281 (452)
T 3e4b_A          213 --------AQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---  281 (452)
T ss_dssp             --------HHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---
T ss_pred             --------HHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---
Confidence                    22223344444332    567777777776662244556666555 3  35678888888888888765   


Q ss_pred             cHHHHHHHHHHhhccC-----ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCCCCCHh
Q 038522          434 NDVTFLSLLFACSHTG-----LTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR----RGQLESAYNMIRQMNIKPTAS  504 (590)
Q Consensus       434 ~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~  504 (590)
                      +...+..+...|. .|     ++++|.+.|++..     ..+......|...|..    ..++++|..+|++.-..-++.
T Consensus       282 ~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~  355 (452)
T 3e4b_A          282 QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS  355 (452)
T ss_dssp             CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred             CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence            4555555655555 44     7888888887775     2356666777777765    348888999988872223455


Q ss_pred             HHHHHHHHHHh----cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          505 LWSAILGACSI----YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       505 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      ....+...|..    ..+.++|...++++.+.++.........+......++.++|.++.++..+.
T Consensus       356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            56666666653    458889999999988877633333333332233445777788887776663

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.60  E-value=5.8e-13  Score=131.42  Aligned_cols=378  Identities=10%  Similarity=-0.010  Sum_probs=186.3

Q ss_pred             HHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCCh---HHHHHHhccCCCCCccchHHHHHHHHhcC
Q 038522           34 MSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDV---LSARKAFDRMPERNVVSWTAMISGYAQNG  110 (590)
Q Consensus        34 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~li~~~~~~~  110 (590)
                      ..+...+.+.|++++|.+.|+...+.|   ++..+..|...|...|+.   ++|...|+...+.+...+..|...+...+
T Consensus         7 ~~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~   83 (452)
T 3e4b_A            7 QRLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKP   83 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC----------------------------CHHHHHHHHHTC-
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCC
Confidence            345677788899999999999998876   445556667777778888   89999999887777777887877666655


Q ss_pred             -----ChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchh---hHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522          111 -----YDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQ---GGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI  182 (590)
Q Consensus       111 -----~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  182 (590)
                           ++++|+..|++..+.|..   ..+..+...+...+...   .+.+.+......|   +......|...|...+.+
T Consensus        84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~  157 (452)
T 3e4b_A           84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTY  157 (452)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCG
T ss_pred             CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCc
Confidence                 778999999999887632   25555555555544433   3344444444444   234555566666666643


Q ss_pred             ----HHHHHHHhccCCCCcchHHHHHHHHHhcC---CchHHHHHHHHHHHcCCCCChhhHHHHHHHhccC----CChhHH
Q 038522          183 ----EDAWILFERIERKDVVSWNAMIGGLAMQG---FNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGG----IELMKI  251 (590)
Q Consensus       183 ----~~A~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~----~~~~~a  251 (590)
                          +++..+++.....+...+..|...+...|   +.++|++.|++..+.| .++...+..+...|...    ++.++|
T Consensus       158 ~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A  236 (452)
T 3e4b_A          158 DQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTA  236 (452)
T ss_dssp             GGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHH
Confidence                34444555555555667777777777777   6777777777776665 33443333444444332    455555


Q ss_pred             HHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCC
Q 038522          252 SQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKMG  331 (590)
Q Consensus       252 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~  331 (590)
                      ...|+...    +-+...+..|...|..                            ....++ +++|+..|++..+.|  
T Consensus       237 ~~~~~~aa----~g~~~a~~~Lg~~~~~----------------------------~~~~~d-~~~A~~~~~~Aa~~g--  281 (452)
T 3e4b_A          237 QALLEKIA----PGYPASWVSLAQLLYD----------------------------FPELGD-VEQMMKYLDNGRAAD--  281 (452)
T ss_dssp             HHHHHHHG----GGSTHHHHHHHHHHHH----------------------------SGGGCC-HHHHHHHHHHHHHTT--
T ss_pred             HHHHHHHc----CCCHHHHHHHHHHHHh----------------------------CCCCCC-HHHHHHHHHHHHHCC--
Confidence            55555544    2223333333333110                            022344 566666666655544  


Q ss_pred             CCHHHHHHHHHHHhchh-----hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCcc
Q 038522          332 IDDVILCLMLNICANVA-----SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK----SGEIADANRAFDEMGD-KNVI  401 (590)
Q Consensus       332 p~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~  401 (590)
                       +......+-..+. .|     +.++|...++... .   -++..+..|..+|..    ..++++|..+|++..+ .+..
T Consensus       282 -~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~  355 (452)
T 3e4b_A          282 -QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS  355 (452)
T ss_dssp             -CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred             -CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence             2222222222222 12     3444444444333 1   133333444444443    2356666666655443 2344


Q ss_pred             hHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 038522          402 SWTSLIAGYAK----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMIN  463 (590)
Q Consensus       402 ~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  463 (590)
                      ....|...|..    .+++.+|..+|+...+.|. ++.......+......++..+|..+.++..+
T Consensus       356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~-~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~  420 (452)
T 3e4b_A          356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT-PEANDLATQLEAPLTPAQRAEGQRLVQQELA  420 (452)
T ss_dssp             HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            44455554443    2356666666666665542 2222222222222333444555555555443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.60  E-value=1.3e-13  Score=125.04  Aligned_cols=198  Identities=9%  Similarity=-0.040  Sum_probs=164.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 038522          369 AAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC  445 (590)
Q Consensus       369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  445 (590)
                      ...+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~  115 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL  115 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence            55667777888888888888888887752   356678888888999999999999999988763 33677888888889


Q ss_pred             hccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHH
Q 038522          446 SHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLG  522 (590)
Q Consensus       446 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a  522 (590)
                      ...|++++|.+.++++.+. +..| +...+..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|
T Consensus       116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999998862 3455 3667788888999999999999999887 3334 577788888999999999999


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ...++++++..|.++..+..++.+|...|++++|.++++++.+...
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p  240 (252)
T 2ho1_A          195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP  240 (252)
T ss_dssp             HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence            9999999999998889999999999999999999999999887654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.59  E-value=1.7e-13  Score=125.84  Aligned_cols=243  Identities=12%  Similarity=-0.002  Sum_probs=135.6

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcc--CC-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038522          270 TGSLIDVYAKYGSIRSAYQLYRSML--KT-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICAN  346 (590)
Q Consensus       270 ~~~l~~~~~~~g~~~~a~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~  346 (590)
                      .......+...|++++|...|+++.  .| +...+..+...+...|+ +++|+..+++..+.+  ++...          
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~-~~~A~~~~~~a~~~~--~~~~~----------   72 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAK-YDLAQKDIETYFSKV--NATKA----------   72 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTC-HHHHHHHHHHHHTTS--CTTTC----------
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhh-HHHHHHHHHHHHhcc--CchhH----------
Confidence            3344555566666666666666552  22 23355555555555555 666666666555422  11111          


Q ss_pred             hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHH
Q 038522          347 VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELY  423 (590)
Q Consensus       347 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~  423 (590)
                                           ....+..+...|...|++++|...|++..+   .+...|..+...+...|++++|+..+
T Consensus        73 ---------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  131 (272)
T 3u4t_A           73 ---------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYM  131 (272)
T ss_dssp             ---------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHH
Confidence                                 122344555555555666666665555442   23345556666666666666666666


Q ss_pred             HHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCC---hHHHHHHHHhc-
Q 038522          424 KKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQ---LESAYNMIRQM-  497 (590)
Q Consensus       424 ~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~-  497 (590)
                      ++..+.  .| +...+..+...+...+++++|.+.++++.+.   .|+ ...+..+...+...|+   +++|...++++ 
T Consensus       132 ~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  206 (272)
T 3u4t_A          132 EKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLI  206 (272)
T ss_dssp             GGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHH
T ss_pred             HHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHH
Confidence            666553  33 3444444442333334666666666666654   232 4555556666666665   55566666555 


Q ss_pred             ---CCCCCH------hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522          498 ---NIKPTA------SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG  551 (590)
Q Consensus       498 ---~~~p~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  551 (590)
                         ...|+.      .++..+...|...|++++|...++++++++|+++.++..+..+....+
T Consensus       207 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~  269 (272)
T 3u4t_A          207 EVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH  269 (272)
T ss_dssp             HHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred             HHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence               112331      456677778888888888888888888888888888877766655443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.58  E-value=4.2e-14  Score=127.49  Aligned_cols=198  Identities=9%  Similarity=0.070  Sum_probs=138.5

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA  444 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  444 (590)
                      ....+..+...+...|++++|...|+++.+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  100 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV  100 (243)
T ss_dssp             --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence            455566667777777888888888877653   345577777788888888888888888887752 3356777778888


Q ss_pred             hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHH
Q 038522          445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLG  522 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a  522 (590)
                      +...|++++|.+.++++.+.  .+.+...+..+...+.+.|++++|.+.++++ .. +.+...+..+...+...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            88888888888888888765  2335667777888888888888888888887 32 33566777888888888888888


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +..++++++..|.++.++..++.+|...|++++|.+.++++.+...
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p  224 (243)
T 2q7f_A          179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP  224 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence            8888888888888888888888888888888888888888877553

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=2.4e-13  Score=120.88  Aligned_cols=199  Identities=11%  Similarity=0.065  Sum_probs=162.7

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA  444 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  444 (590)
                      ++..+..+...+...|++++|...|+++.+   .+...|..+...+...|++++|.+.++++.+.. +.+..++..+...
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            456667778888888888888888887652   345678888888889999999999999988752 3367788888888


Q ss_pred             hhcc-CChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCch
Q 038522          445 CSHT-GLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTS  520 (590)
Q Consensus       445 ~~~~-~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~  520 (590)
                      +... |++++|...++++.+. +..|+ ...+..+...+...|++++|.+.++++ ...| +...+..+...+...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            8899 9999999999998862 33444 567888888899999999999999887 3334 5777888888899999999


Q ss_pred             HHHHHHHHHhcCCC-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          521 LGELAARNLFDMEP-EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       521 ~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +|...++++++..| .++..+..++.++...|+.++|..+++.+.+..+
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p  213 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP  213 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence            99999999999999 8888888888899999999999999998876543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.57  E-value=1.2e-12  Score=120.34  Aligned_cols=220  Identities=11%  Similarity=-0.034  Sum_probs=158.3

Q ss_pred             HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHh----cCChHHHHHHHHhcCC-CCcchHHHHHHHHH
Q 038522          337 LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAK----SGEIADANRAFDEMGD-KNVISWTSLIAGYA  411 (590)
Q Consensus       337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~  411 (590)
                      +..+...+...+++++|...++...+.+   +...+..+...|..    .+++++|...|++..+ .+...+..+...+.
T Consensus         9 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~   85 (273)
T 1ouv_A            9 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYY   85 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence            3334444444455555555555554421   33455566666777    7777777777776653 35566777777777


Q ss_pred             h----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc----cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 038522          412 K----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH----TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR  483 (590)
Q Consensus       412 ~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  483 (590)
                      .    .+++++|+..|++..+.+   +...+..+...+..    .+++++|...|++..+. +   +...+..+...|..
T Consensus        86 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~  158 (273)
T 1ouv_A           86 SGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDA  158 (273)
T ss_dssp             HTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHH
T ss_pred             CCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHc
Confidence            7    888888888888887764   56677777777777    88888888888888764 3   55667777777777


Q ss_pred             ----cCChHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cC
Q 038522          484 ----RGQLESAYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA----AG  551 (590)
Q Consensus       484 ----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g  551 (590)
                          .+++++|++.|++.-...++..+..+...+..    .+++++|+..++++.+.+|  +.++..++.+|..    .|
T Consensus       159 ~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~  236 (273)
T 1ouv_A          159 GRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTR  236 (273)
T ss_dssp             TSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSC
T ss_pred             CCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCccc
Confidence                88888888888887112345677778888888    8888889988888888866  6778888888888    88


Q ss_pred             ChHHHHHHHHHhhhcCC
Q 038522          552 AWDNARKTRKLMEERSL  568 (590)
Q Consensus       552 ~~~~A~~~~~~~~~~~~  568 (590)
                      ++++|.+++++..+.+.
T Consensus       237 ~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          237 NEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             CSTTHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHcCC
Confidence            88999988888877664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.56  E-value=3.5e-13  Score=123.80  Aligned_cols=226  Identities=10%  Similarity=-0.030  Sum_probs=176.2

Q ss_pred             HHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCcc----hHHHHHHHHHh
Q 038522          339 LMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--KNVI----SWTSLIAGYAK  412 (590)
Q Consensus       339 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~l~~~~~~  412 (590)
                      .....+...|+++.|...++.+.+..+. +...+..+...|...|++++|...+++..+  ++..    .|..+...+..
T Consensus         8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~   86 (272)
T 3u4t_A            8 RYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK   86 (272)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence            3344455556666666666665554432 445667788888999999999999988764  2332    38889999999


Q ss_pred             cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHH
Q 038522          413 HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAY  491 (590)
Q Consensus       413 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~  491 (590)
                      .|++++|+..+++..+.. +.+...+..+...+...|++++|.+.+++..+.   .| +...+..+...+...+++++|.
T Consensus        87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999852 335678899999999999999999999999853   45 4667777773455566999999


Q ss_pred             HHHHhc-CCCC-CHhHHHHHHHHHHhcCC---chHHHHHHHHHhcCC---CCC-----cchHHHHHHHHHhcCChHHHHH
Q 038522          492 NMIRQM-NIKP-TASLWSAILGACSIYGN---TSLGELAARNLFDME---PEK-----SVNYVVLSNIYTAAGAWDNARK  558 (590)
Q Consensus       492 ~~~~~~-~~~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~  558 (590)
                      +.|+++ ...| +...+..+...+...|+   +++|...++++++..   |+.     ..+|..++.+|...|++++|.+
T Consensus       163 ~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  242 (272)
T 3u4t_A          163 SSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA  242 (272)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            999998 4445 46777888888888888   899999999999765   532     2578889999999999999999


Q ss_pred             HHHHhhhcCCc
Q 038522          559 TRKLMEERSLR  569 (590)
Q Consensus       559 ~~~~~~~~~~~  569 (590)
                      .++++.+..+.
T Consensus       243 ~~~~al~~~p~  253 (272)
T 3u4t_A          243 AWKNILALDPT  253 (272)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHhcCcc
Confidence            99999886653

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=1e-13  Score=124.96  Aligned_cols=213  Identities=11%  Similarity=0.030  Sum_probs=155.8

Q ss_pred             HHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 038522          335 VILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYA  411 (590)
Q Consensus       335 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  411 (590)
                      ..+..+...+...|+++.|...++.+.+..+. +...+..+...+...|++++|...++++.+   .+...+..+...+.
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~  102 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV  102 (243)
T ss_dssp             ------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
Confidence            33444455555666666666666666554332 466677788888888888888888887652   35667888889999


Q ss_pred             hcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 038522          412 KHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAY  491 (590)
Q Consensus       412 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  491 (590)
                      ..|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..+...+.+.|++++|.
T Consensus       103 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~  179 (243)
T 2q7f_A          103 VKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEAL  179 (243)
T ss_dssp             HTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999998863 446778888889999999999999999999875  2345778888999999999999999


Q ss_pred             HHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522          492 NMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG  551 (590)
Q Consensus       492 ~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  551 (590)
                      +.++++ .. +.+..++..+...+...|++++|...++++++..|+++.++..++.+....|
T Consensus       180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l~~~~~  241 (243)
T 2q7f_A          180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLLGHHHH  241 (243)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC------
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHHHhhcc
Confidence            999988 33 3457788999999999999999999999999999999988888776655444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.55  E-value=2.9e-13  Score=116.10  Aligned_cols=166  Identities=17%  Similarity=0.127  Sum_probs=141.6

Q ss_pred             CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHH
Q 038522          399 NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCV  477 (590)
Q Consensus       399 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  477 (590)
                      +...|..+...+...|++++|++.|++..+.  .| +...+..+..++...|++++|...++.....  .+.+...+..+
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~   79 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL   79 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence            4557888888888899999999999998875  45 6778888888999999999999999998865  23346677778


Q ss_pred             HHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 038522          478 VDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDN  555 (590)
Q Consensus       478 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  555 (590)
                      ...+...++++.|.+.+.+. ...| +...+..+...+...|++++|++.++++++.+|.++.++..++.+|...|++++
T Consensus        80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence            88889999999999999887 3334 567888899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhcCC
Q 038522          556 ARKTRKLMEERSL  568 (590)
Q Consensus       556 A~~~~~~~~~~~~  568 (590)
                      |++.+++..+..+
T Consensus       160 A~~~~~~al~~~p  172 (184)
T 3vtx_A          160 AVKYFKKALEKEE  172 (184)
T ss_dssp             HHHHHHHHHHTTH
T ss_pred             HHHHHHHHHhCCc
Confidence            9999999887653

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.54  E-value=1.2e-12  Score=118.58  Aligned_cols=204  Identities=10%  Similarity=0.001  Sum_probs=157.6

Q ss_pred             HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHh
Q 038522          336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAK  412 (590)
Q Consensus       336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~  412 (590)
                      .+..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|...++++.+   .+...+..+...+..
T Consensus        39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence            3444445555566666666666665554322 456677778888888888888888887652   355678888888999


Q ss_pred             cCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHH
Q 038522          413 HGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAY  491 (590)
Q Consensus       413 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  491 (590)
                      .|++++|.+.++++.+.+..| +...+..+...+...|++++|.+.++++.+.  .+.+...+..+...+...|++++|.
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999988743455 5667888888899999999999999999875  1335778888999999999999999


Q ss_pred             HHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522          492 NMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV  542 (590)
Q Consensus       492 ~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  542 (590)
                      ..++++ .. +.+...+..+...+...|++++|.+.++++.+..|+++.....
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~  248 (252)
T 2ho1_A          196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEYQEF  248 (252)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHHHHH
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHHHHH
Confidence            999988 43 3456678888888999999999999999999999977766543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.54  E-value=3.9e-13  Score=123.66  Aligned_cols=219  Identities=13%  Similarity=-0.019  Sum_probs=181.8

Q ss_pred             hchhhhHhHHHHHHHHHHhCC---CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchH
Q 038522          345 ANVASLNLGRQIHAFAFKYQS---SYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHE  418 (590)
Q Consensus       345 ~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~  418 (590)
                      ...++++.|...++.+.+...   +.+..++..+...+...|++++|...|+++.+   .+...|..+...+...|++++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHH
Confidence            456899999999999988643   22577888899999999999999999998763   457789999999999999999


Q ss_pred             HHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522          419 AIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-  497 (590)
Q Consensus       419 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  497 (590)
                      |...++++.+.. +.+...+..+...+...|++++|...++++.+.   .|+.......+..+...|++++|...+++. 
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999862 336788899999999999999999999999965   555544555555667789999999999877 


Q ss_pred             -CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC----CcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          498 -NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPE----KSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       498 -~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                       ..+++...+ .++..+...++.++|...++++++..|.    ++..+..++.+|...|++++|.+.++++.+..+
T Consensus       172 ~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p  246 (275)
T 1xnf_A          172 EKSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNV  246 (275)
T ss_dssp             HHSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred             hcCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCc
Confidence             334444444 4667777888899999999999988773    368899999999999999999999999988653

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.53  E-value=1.1e-12  Score=125.08  Aligned_cols=224  Identities=10%  Similarity=0.059  Sum_probs=177.7

Q ss_pred             HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCC-hHHHHHHHHhcCC---CCcchHHHHHHHHHh
Q 038522          337 LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGE-IADANRAFDEMGD---KNVISWTSLIAGYAK  412 (590)
Q Consensus       337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~---~~~~~~~~l~~~~~~  412 (590)
                      +..+...+...|+++.|...++.+++..+. +...++.+..++...|+ +++|+..|+++.+   .+...|..+..++..
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~  178 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEW  178 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            333444444555555666665555555433 56677788888888886 9999999988773   356788889999999


Q ss_pred             cCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHh-cCChHH
Q 038522          413 HGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFAR-RGQLES  489 (590)
Q Consensus       413 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~-~g~~~~  489 (590)
                      .|++++|+..|+++++.  .| +...|..+..++...|++++|+..++++.+.   .| +...|+.+..++.+ .|..++
T Consensus       179 ~g~~~eAl~~~~kal~l--dP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          179 LRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             ccCHHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchH
Confidence            99999999999999985  45 6788999999999999999999999999975   44 57889999999988 666577


Q ss_pred             H-----HHHHHhc-CCCC-CHhHHHHHHHHHHhcC--CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC---------
Q 038522          490 A-----YNMIRQM-NIKP-TASLWSAILGACSIYG--NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG---------  551 (590)
Q Consensus       490 A-----~~~~~~~-~~~p-~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------  551 (590)
                      |     ++.++++ .+.| +...|..+...+...|  ++++|++.++++ +.+|+++.++..++.+|...|         
T Consensus       254 A~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~  332 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKED  332 (382)
T ss_dssp             HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence            7     4778777 4455 5678888888888888  699999999998 999999999999999999875         


Q ss_pred             ChHHHHHHHHHh-hhcC
Q 038522          552 AWDNARKTRKLM-EERS  567 (590)
Q Consensus       552 ~~~~A~~~~~~~-~~~~  567 (590)
                      .+++|+++++++ .+..
T Consensus       333 ~~~~A~~~~~~l~~~~D  349 (382)
T 2h6f_A          333 ILNKALELCEILAKEKD  349 (382)
T ss_dssp             HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            358999999998 5544

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.52  E-value=2.7e-12  Score=122.47  Aligned_cols=243  Identities=12%  Similarity=0.102  Sum_probs=190.0

Q ss_pred             chHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhh-hHhHHHHHHHHHHhCCCcchhHHHHHHHH
Q 038522          300 SCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVAS-LNLGRQIHAFAFKYQSSYDAAVGNALIDM  378 (590)
Q Consensus       300 ~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  378 (590)
                      .|..+...+...++ +++|+..+++.+... +-+...|..+..++...|+ ++.|...++.+++..+. +...|..+..+
T Consensus        99 a~~~lg~~~~~~g~-~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~  175 (382)
T 2h6f_A           99 VYDYFRAVLQRDER-SERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHTCC-CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCC-hHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence            45555566666666 777777777777652 2344556666667777775 88888888887777655 67788888888


Q ss_pred             HHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhc-cCChHH
Q 038522          379 YAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSH-TGLTCE  453 (590)
Q Consensus       379 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~-~~~~~~  453 (590)
                      +.+.|++++|+..|+++.+   .+...|..+..++...|++++|+..++++++.  .| +...|..+..++.. .|..++
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcchH
Confidence            9999999999999998873   46678899999999999999999999999986  45 67888888888888 566577


Q ss_pred             H-----HHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcC--ChHHHHHHHHhcCCCC-CHhHHHHHHHHHHhcC-------
Q 038522          454 G-----WELFTDMINKYRILP-RAEHFSCVVDLFARRG--QLESAYNMIRQMNIKP-TASLWSAILGACSIYG-------  517 (590)
Q Consensus       454 a-----~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~p-~~~~~~~l~~~~~~~~-------  517 (590)
                      |     ++.+++..+.   .| +...|..+..++...|  ++++|++.++++...| +...+..++..|.+.|       
T Consensus       254 A~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          254 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            7     4888888864   45 4678888888888888  6899999998884444 5567788888888764       


Q ss_pred             --CchHHHHHHHHH-hcCCCCCcchHHHHHHHHHhc
Q 038522          518 --NTSLGELAARNL-FDMEPEKSVNYVVLSNIYTAA  550 (590)
Q Consensus       518 --~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~  550 (590)
                        .+++|+++++++ .+++|.....|..++..+..+
T Consensus       331 ~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~  366 (382)
T 2h6f_A          331 EDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK  366 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence              258999999999 999999999999988877654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.51  E-value=2.4e-12  Score=114.24  Aligned_cols=206  Identities=11%  Similarity=-0.035  Sum_probs=159.2

Q ss_pred             HHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 038522          335 VILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYA  411 (590)
Q Consensus       335 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  411 (590)
                      ..+..+...+...|+++.|...++.+.+..+. +...+..+...|...|++++|...++++.+   .+...+..+...+.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~   87 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC   87 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            34445555566666666666666666655432 456677788888888888888888887752   35667888888999


Q ss_pred             hc-CCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 038522          412 KH-GYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES  489 (590)
Q Consensus       412 ~~-~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  489 (590)
                      .. |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.  .+.+...+..+...+...|++++
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~  165 (225)
T 2vq2_A           88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGD  165 (225)
T ss_dssp             TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHH
Confidence            99 99999999999998743345 3677888888999999999999999999875  23347788889999999999999


Q ss_pred             HHHHHHhc-CC-C-CCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522          490 AYNMIRQM-NI-K-PTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVL  543 (590)
Q Consensus       490 A~~~~~~~-~~-~-p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  543 (590)
                      |.+.++++ .. + .+...+..+...+...|+.+.+...++.+.+..|+++.....+
T Consensus       166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  222 (225)
T 2vq2_A          166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHh
Confidence            99999988 33 3 4566777777788899999999999999999999887766544

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.51  E-value=2.1e-13  Score=135.44  Aligned_cols=209  Identities=8%  Similarity=-0.026  Sum_probs=174.9

Q ss_pred             hHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCh-HHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHH
Q 038522          350 LNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEI-ADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKK  425 (590)
Q Consensus       350 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~  425 (590)
                      ++.+...+....... +.+...+..+...|...|++ ++|+..|++..+  | +...|..+...|...|++++|.+.|++
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  162 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG  162 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            344444444433322 23667778888888888999 999999988763  3 467889999999999999999999999


Q ss_pred             HHHcCCCCcHHHHHHHHHHhhcc---------CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc--------CChH
Q 038522          426 MKHEGMVPNDVTFLSLLFACSHT---------GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR--------GQLE  488 (590)
Q Consensus       426 m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~  488 (590)
                      ..+.  .|+...+..+...+...         |++++|.+.+++..+.  .+.+...+..+..+|...        |+++
T Consensus       163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            9985  68888888899999999         9999999999999975  233578889999999998        9999


Q ss_pred             HHHHHHHhc-CCCC----CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522          489 SAYNMIRQM-NIKP----TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLM  563 (590)
Q Consensus       489 ~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (590)
                      +|++.|+++ ...|    +...|..+..+|...|++++|+..++++++++|+++.++..++.++...|++++|++.+.++
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999998 5455    67889999999999999999999999999999999999999999999999999999765544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.50  E-value=1.2e-12  Score=115.22  Aligned_cols=189  Identities=15%  Similarity=0.077  Sum_probs=114.8

Q ss_pred             HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHh
Q 038522          336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAK  412 (590)
Q Consensus       336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~  412 (590)
                      .+..+...+...|++++|...++.+.+..+. ++..+..+...+.+.|++++|...|++..+  | +...+..+...+..
T Consensus         7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A            7 NPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            3333444444444444444444444443322 445555666666666666666666666542  3 34456666666666


Q ss_pred             c-----------CCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH
Q 038522          413 H-----------GYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL  480 (590)
Q Consensus       413 ~-----------~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~  480 (590)
                      .           |++++|+..+++..+.  .| +...+..+..++...|++++|+..|++..+. .  .+...+..+..+
T Consensus        86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~~la~~  160 (217)
T 2pl2_A           86 LYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRSALAEL  160 (217)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHHHHHHH
T ss_pred             hhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHHHHHHH
Confidence            6           8888888888887774  45 4667777777788888888888888888776 4  567777788888


Q ss_pred             HHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522          481 FARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLF  530 (590)
Q Consensus       481 ~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  530 (590)
                      |...|++++|+..|+++ ...| +...+..+...+...|++++|+..++++.
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            88888888888888877 3334 55667777778888888888888777654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.50  E-value=2.7e-13  Score=132.88  Aligned_cols=229  Identities=14%  Similarity=0.040  Sum_probs=152.5

Q ss_pred             HHHHHHHHhchhhhHhHHHHHHHHHHh----C-CCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----C----Ccch
Q 038522          337 LCLMLNICANVASLNLGRQIHAFAFKY----Q-SSYDAAVGNALIDMYAKSGEIADANRAFDEMGD-----K----NVIS  402 (590)
Q Consensus       337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~  402 (590)
                      +..+...+...|+++.|...++.+.+.    + .......+..+...|...|++++|...+++..+     .    ...+
T Consensus        89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  168 (411)
T 4a1s_A           89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA  168 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            333344444444444444444443332    1 111344556666677777777777777766542     1    1235


Q ss_pred             HHHHHHHHHhcCC-----------------chHHHHHHHHHHHc----CCCC-cHHHHHHHHHHhhccCChHHHHHHHHH
Q 038522          403 WTSLIAGYAKHGY-----------------GHEAIELYKKMKHE----GMVP-NDVTFLSLLFACSHTGLTCEGWELFTD  460 (590)
Q Consensus       403 ~~~l~~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~  460 (590)
                      +..+...+...|+                 +++|++.+++..+.    +..| ...++..+...+...|++++|...+++
T Consensus       169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  248 (411)
T 4a1s_A          169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE  248 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            6667777777777                 77777777765442    1112 234677777888888999999998888


Q ss_pred             HHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-------CHhHHHHHHHHHHhcCCchHHHHHHHH
Q 038522          461 MINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-------TASLWSAILGACSIYGNTSLGELAARN  528 (590)
Q Consensus       461 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~  528 (590)
                      ..+...-.++    ...+..+...|...|++++|.+.+++. ...|       ...++..+...+...|++++|...+++
T Consensus       249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (411)
T 4a1s_A          249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR  328 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7754211112    236778888899999999999988876 1111       145677788888899999999999999


Q ss_pred             HhcCCCC------CcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          529 LFDMEPE------KSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       529 ~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +++..+.      ...++..++.+|...|++++|.+++++..+
T Consensus       329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  371 (411)
T 4a1s_A          329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ  371 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9876542      244788899999999999999999998865

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.50  E-value=6e-13  Score=130.13  Aligned_cols=293  Identities=12%  Similarity=0.029  Sum_probs=155.9

Q ss_pred             CCChhHHHHHHHHHHhcCChHHHHHHHHhcc--CCC-----ccchHHHHHHHHhcCCChHHHHHHHHHHHHc----CCCC
Q 038522          264 ESSNKLTGSLIDVYAKYGSIRSAYQLYRSML--KTD-----IISCTALISGFARDDNHSKEAFDLFKDMILK----KMGI  332 (590)
Q Consensus       264 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~--~~~-----~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~----~~~p  332 (590)
                      ......+......+...|++++|...|++..  .|+     ...+..+...+...|+ +++|...+++....    +..|
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~   84 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHD-YAKALEYHHHDLTLARTIGDQL   84 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHhccccH
Confidence            3344455666777788888888888887773  222     1356666677777777 88888887776542    1111


Q ss_pred             C-HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC-----cchhHHHHHHHHHHhcCC--------------------hH
Q 038522          333 D-DVILCLMLNICANVASLNLGRQIHAFAFKYQSS-----YDAAVGNALIDMYAKSGE--------------------IA  386 (590)
Q Consensus       333 ~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~--------------------~~  386 (590)
                      . ...+..+...+...|+++.|...+....+....     ....++..+...|...|+                    ++
T Consensus        85 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~  164 (406)
T 3sf4_A           85 GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQ  164 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHH
Confidence            1 234445555666666666666666655442111     113355555666666666                    66


Q ss_pred             HHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCc----HHHHHHHHHHhhccCChH
Q 038522          387 DANRAFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM-VPN----DVTFLSLLFACSHTGLTC  452 (590)
Q Consensus       387 ~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~~~~~  452 (590)
                      +|...+++..+     ++    ..++..+...+...|++++|...+++..+... .++    ..++..+...+...|+++
T Consensus       165 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  244 (406)
T 3sf4_A          165 AAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE  244 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChH
Confidence            66655554431     11    12455555556666666666666665543200 011    124555555555666666


Q ss_pred             HHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-C---CCCC----HhHHHHHHHHHHhcCCch
Q 038522          453 EGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-N---IKPT----ASLWSAILGACSIYGNTS  520 (590)
Q Consensus       453 ~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~----~~~~~~l~~~~~~~~~~~  520 (590)
                      +|...+++..+...-.++    ..++..+...|...|++++|.+.+++. .   ..++    ..++..+...+...|+++
T Consensus       245 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  324 (406)
T 3sf4_A          245 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHD  324 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            666666655432111111    334455555566666666666665554 1   0111    234455555555666666


Q ss_pred             HHHHHHHHHhcCCCCCc------chHHHHHHHHHhcCChHHHH
Q 038522          521 LGELAARNLFDMEPEKS------VNYVVLSNIYTAAGAWDNAR  557 (590)
Q Consensus       521 ~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~  557 (590)
                      +|...+++++++.+...      .++..++.+|...|+...+.
T Consensus       325 ~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  367 (406)
T 3sf4_A          325 QAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN  367 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred             HHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence            66666666666655442      23444555555555544433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.50  E-value=9.7e-12  Score=114.14  Aligned_cols=218  Identities=10%  Similarity=-0.028  Sum_probs=154.8

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHH
Q 038522          304 LISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICAN----VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMY  379 (590)
Q Consensus       304 l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  379 (590)
                      +...+...++ +++|...|++..+.   .+...+..+...+..    .+++++|...++...+.+   ++..+..+...|
T Consensus        12 lg~~~~~~~~-~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~   84 (273)
T 1ouv_A           12 LGAKSYKEKD-FTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY   84 (273)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             HHHHHHhCCC-HHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence            3334444444 55555555544441   122333444444444    555555555555555544   455666677777


Q ss_pred             Hh----cCChHHHHHHHHhcCC-CCcchHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhc---
Q 038522          380 AK----SGEIADANRAFDEMGD-KNVISWTSLIAGYAK----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSH---  447 (590)
Q Consensus       380 ~~----~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~---  447 (590)
                      ..    .+++++|...|++..+ .+...+..+...|..    .+++++|+..|++..+.+   +...+..+...+..   
T Consensus        85 ~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~  161 (273)
T 1ouv_A           85 YSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRG  161 (273)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred             hCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCC
Confidence            77    7888888888877653 356677778888888    889999999999988865   45566667777776   


Q ss_pred             -cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHh----cC
Q 038522          448 -TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR----RGQLESAYNMIRQM-NIKPTASLWSAILGACSI----YG  517 (590)
Q Consensus       448 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~----~~  517 (590)
                       .+++++|...+++..+.    .+...+..+...|..    .+++++|++.|++. ...| ...+..+...|..    .+
T Consensus       162 ~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~l~~~~~~g~~~~~  236 (273)
T 1ouv_A          162 TPKDLKKALASYDKACDL----KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN-GGGCFNLGAMQYNGEGVTR  236 (273)
T ss_dssp             SCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTTSSSSC
T ss_pred             CCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC-HHHHHHHHHHHHcCCCccc
Confidence             88999999999998864    246777888888988    99999999999988 3333 6677888888888    89


Q ss_pred             CchHHHHHHHHHhcCCCCC
Q 038522          518 NTSLGELAARNLFDMEPEK  536 (590)
Q Consensus       518 ~~~~a~~~~~~~~~~~p~~  536 (590)
                      ++++|...++++.+.+|++
T Consensus       237 ~~~~A~~~~~~a~~~~~~~  255 (273)
T 1ouv_A          237 NEKQAIENFKKGCKLGAKG  255 (273)
T ss_dssp             CSTTHHHHHHHHHHHTCHH
T ss_pred             CHHHHHHHHHHHHHcCCHH
Confidence            9999999999999998843

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.48  E-value=7.9e-13  Score=125.49  Aligned_cols=231  Identities=14%  Similarity=0.068  Sum_probs=158.8

Q ss_pred             HHHHHHHHhchhhhHhHHHHHHHHHHh----CCC-cchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----cch
Q 038522          337 LCLMLNICANVASLNLGRQIHAFAFKY----QSS-YDAAVGNALIDMYAKSGEIADANRAFDEMGD-----KN----VIS  402 (590)
Q Consensus       337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~  402 (590)
                      +..+...+...|+++.|...+....+.    +.. ....++..+...|...|++++|...+++..+     ++    ..+
T Consensus        46 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  125 (338)
T 3ro2_A           46 YSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARA  125 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHH
Confidence            334444444445555555544443321    111 1244556677777777888888777776542     22    226


Q ss_pred             HHHHHHHHHhcCC--------------------chHHHHHHHHHHHc----CCCC-cHHHHHHHHHHhhccCChHHHHHH
Q 038522          403 WTSLIAGYAKHGY--------------------GHEAIELYKKMKHE----GMVP-NDVTFLSLLFACSHTGLTCEGWEL  457 (590)
Q Consensus       403 ~~~l~~~~~~~~~--------------------~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~  457 (590)
                      +..+...+...|+                    +++|...+++..+.    +..| ....+..+...+...|++++|.+.
T Consensus       126 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  205 (338)
T 3ro2_A          126 LYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIA  205 (338)
T ss_dssp             HHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            6677777778888                    88888888776532    1122 234677778888899999999999


Q ss_pred             HHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CC---CCC----HhHHHHHHHHHHhcCCchHHHHH
Q 038522          458 FTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NI---KPT----ASLWSAILGACSIYGNTSLGELA  525 (590)
Q Consensus       458 ~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~---~p~----~~~~~~l~~~~~~~~~~~~a~~~  525 (590)
                      +++..+.....++    ...+..+...+...|++++|.+.+++. ..   .++    ..++..+...+...|++++|...
T Consensus       206 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  285 (338)
T 3ro2_A          206 HEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDY  285 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9888754211112    336778888999999999999999887 11   112    45677788889999999999999


Q ss_pred             HHHHhcCCCCC------cchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          526 ARNLFDMEPEK------SVNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       526 ~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      ++++++..|..      ..++..++.+|...|++++|.+.+++..+..
T Consensus       286 ~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  333 (338)
T 3ro2_A          286 HLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence            99998765422      4478899999999999999999999987743

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.47  E-value=7e-10  Score=113.11  Aligned_cols=214  Identities=9%  Similarity=0.048  Sum_probs=133.0

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHH-HHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522          318 AFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGR-QIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMG  396 (590)
Q Consensus       318 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  396 (590)
                      +..+|++.+.. ++-....|.....-+...|+.+.|. .+++...... +.+...+..++....+.|++++|..+|+++.
T Consensus       328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l  405 (679)
T 4e6h_A          328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCI  405 (679)
T ss_dssp             HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44566666543 2335555666666666667777775 7777777643 3355666667777777788888887777765


Q ss_pred             C-------------CC------------cchHHHHHHHHHhcCCchHHHHHHHHHHHc-CCCCcHHHHHHHHHHhhcc-C
Q 038522          397 D-------------KN------------VISWTSLIAGYAKHGYGHEAIELYKKMKHE-GMVPNDVTFLSLLFACSHT-G  449 (590)
Q Consensus       397 ~-------------~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~-~  449 (590)
                      +             |+            ...|...+....+.|+.+.|..+|.+..+. + .+....|...+..-.+. +
T Consensus       406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~  484 (679)
T 4e6h_A          406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK  484 (679)
T ss_dssp             HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred             HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence            3             21            124666666666777777788888777764 1 11223333222222232 4


Q ss_pred             ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC----CHhHHHHHHHHHHhcCCchHHHH
Q 038522          450 LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP----TASLWSAILGACSIYGNTSLGEL  524 (590)
Q Consensus       450 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p----~~~~~~~l~~~~~~~~~~~~a~~  524 (590)
                      +.+.|.++|+...+.+  +.+...+...++.....|+.+.|..+|+++ ...|    ....|...+.--...|+.+.+..
T Consensus       485 d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~  562 (679)
T 4e6h_A          485 DTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT  562 (679)
T ss_dssp             CCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred             CHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            4777888887777653  234555666777677777788888888776 3233    23456666666667777878888


Q ss_pred             HHHHHhcCCCCC
Q 038522          525 AARNLFDMEPEK  536 (590)
Q Consensus       525 ~~~~~~~~~p~~  536 (590)
                      +.+++.+..|++
T Consensus       563 v~~R~~~~~P~~  574 (679)
T 4e6h_A          563 LEKRFFEKFPEV  574 (679)
T ss_dssp             HHHHHHHHSTTC
T ss_pred             HHHHHHHhCCCC
Confidence            888888777754

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.47  E-value=7.2e-13  Score=129.53  Aligned_cols=283  Identities=12%  Similarity=-0.010  Sum_probs=192.7

Q ss_pred             HHHHHhccCCChhHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhccC-----C----CccchHHH
Q 038522          237 SILRASVGGIELMKISQIHDLIIKLGLESS---NKLTGSLIDVYAKYGSIRSAYQLYRSMLK-----T----DIISCTAL  304 (590)
Q Consensus       237 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l  304 (590)
                      .....+...|++++|...++...+.+....   ..++..+...+...|++++|...+++...     .    ...++..+
T Consensus        14 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   93 (406)
T 3sf4_A           14 LEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL   93 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence            333444445555555555555544421110   23455566666667777777766665411     1    13356677


Q ss_pred             HHHHHhcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhchhh--------------------hHhHHHHHHH
Q 038522          305 ISGFARDDNHSKEAFDLFKDMILKKM-GID----DVILCLMLNICANVAS--------------------LNLGRQIHAF  359 (590)
Q Consensus       305 ~~~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~  359 (590)
                      ...+...|+ +++|...+++..+... .++    ..++..+...+...|+                    ++.|...+..
T Consensus        94 a~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  172 (406)
T 3sf4_A           94 GNTLKVLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEE  172 (406)
T ss_dssp             HHHHHHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCC-HHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHH
Confidence            778888888 9999999988765311 112    3467778888899999                    9999999887


Q ss_pred             HHHh----CC-CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHH
Q 038522          360 AFKY----QS-SYDAAVGNALIDMYAKSGEIADANRAFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKK  425 (590)
Q Consensus       360 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~  425 (590)
                      ..+.    +. .....++..+...|...|++++|...+++..+     ++    ..++..+...+...|++++|...+++
T Consensus       173 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  252 (406)
T 3sf4_A          173 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  252 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            7653    11 12245678888999999999999999998763     22    23788889999999999999999999


Q ss_pred             HHHc----CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522          426 MKHE----GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQ  496 (590)
Q Consensus       426 m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~  496 (590)
                      ..+.    +..+ ...++..+...+...|++++|...+++..+...-.++    ..++..+...|...|++++|.+.+++
T Consensus       253 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  332 (406)
T 3sf4_A          253 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  332 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            8753    1111 1557788888999999999999999998764221222    55778889999999999999999988


Q ss_pred             c-------CCCC-CHhHHHHHHHHHHhcCCch
Q 038522          497 M-------NIKP-TASLWSAILGACSIYGNTS  520 (590)
Q Consensus       497 ~-------~~~p-~~~~~~~l~~~~~~~~~~~  520 (590)
                      .       +..+ ...++..+...+...|+..
T Consensus       333 al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          333 HLEISREVGDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence            6       1111 2334555666666666554

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.45  E-value=2.9e-12  Score=124.08  Aligned_cols=223  Identities=8%  Similarity=-0.025  Sum_probs=161.1

Q ss_pred             HHHhchhhhHhHHHHHHHHHHh----CCCc-chhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC-----cchHHHH
Q 038522          342 NICANVASLNLGRQIHAFAFKY----QSSY-DAAVGNALIDMYAKSGEIADANRAFDEMGD-----KN-----VISWTSL  406 (590)
Q Consensus       342 ~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~l  406 (590)
                      ..+...|+++.|...+..+.+.    +..+ ...++..+...|...|++++|...+++..+     ++     ..+++.+
T Consensus       111 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          111 MYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3445566666666666666543    1111 345667778888888888888888777652     11     2367778


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHc----CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc---CCCC-ChhHHHHH
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHE----GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY---RILP-RAEHFSCV  477 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l  477 (590)
                      ...|...|++++|...+++..+.    +-.+ ...++..+...+...|++++|.+.+++..+-.   +..| ...++..+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            88899999999999999887653    1111 12467788888999999999999999887621   2213 35678888


Q ss_pred             HHHHHhcCChHHHHHHHHhc-CC-----CC-CHhHHHHHHHHHHhcCC---chHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          478 VDLFARRGQLESAYNMIRQM-NI-----KP-TASLWSAILGACSIYGN---TSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       478 ~~~~~~~g~~~~A~~~~~~~-~~-----~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                      ...|.+.|++++|.+.+++. ..     .| ....+..+...+...|+   +++|+..+++. ...|.....+..++.+|
T Consensus       271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y  349 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDVAKYY  349 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHHHHHH
Confidence            99999999999999999887 11     22 22335667778888888   78888888777 33444566788999999


Q ss_pred             HhcCChHHHHHHHHHhhh
Q 038522          548 TAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       548 ~~~g~~~~A~~~~~~~~~  565 (590)
                      ...|++++|.+.+++..+
T Consensus       350 ~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          350 HERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHH
Confidence            999999999999999877

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.42  E-value=7.5e-13  Score=124.18  Aligned_cols=199  Identities=16%  Similarity=0.137  Sum_probs=125.4

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC-------C----CcchHHHHHHHHHhcCCchHHHHHHHHHHHc------C
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD-------K----NVISWTSLIAGYAKHGYGHEAIELYKKMKHE------G  430 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g  430 (590)
                      ....+..+...|...|++++|...+++..+       +    ...++..+...+...|++++|...++++.+.      +
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  147 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  147 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            344555666666667777777666665541       1    1235666777777788888888877777653      2


Q ss_pred             CCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-C----
Q 038522          431 MVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY-----RILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-N----  498 (590)
Q Consensus       431 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~----  498 (590)
                      -.| ....+..+...+...|++++|.+.++++.+..     +..| ....+..+...|...|++++|.+.++++ .    
T Consensus       148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            223 34566777778888888888888888876531     1122 2456777788888888888888888776 1    


Q ss_pred             -----CCCC-------HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          499 -----IKPT-------ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       499 -----~~p~-------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                           ..+.       ...+..+...+...+.+..+...++++....|..+.++..++.+|...|++++|.+++++..+.
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             HHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                 1111       1122223333446677778888888888888988999999999999999999999999988763

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.42  E-value=7.3e-12  Score=107.27  Aligned_cols=167  Identities=17%  Similarity=0.123  Sum_probs=142.1

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA  444 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~  444 (590)
                      ++.+|..+...|.+.|++++|+..|++..+   .+..+|..+...+.+.|++++|...+++..... +.+...+..+...
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence            567788899999999999999999998763   356688889999999999999999999988752 3356677777888


Q ss_pred             hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHH
Q 038522          445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLG  522 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a  522 (590)
                      +...++++.+...+.+..+.  .+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus        83 ~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            88999999999999999865  2335778889999999999999999999998 4444 677899999999999999999


Q ss_pred             HHHHHHHhcCCCCCc
Q 038522          523 ELAARNLFDMEPEKS  537 (590)
Q Consensus       523 ~~~~~~~~~~~p~~~  537 (590)
                      +..++++++++|+++
T Consensus       161 ~~~~~~al~~~p~~a  175 (184)
T 3vtx_A          161 VKYFKKALEKEEKKA  175 (184)
T ss_dssp             HHHHHHHHHTTHHHH
T ss_pred             HHHHHHHHhCCccCH
Confidence            999999999999653

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.41  E-value=3.1e-12  Score=109.62  Aligned_cols=163  Identities=13%  Similarity=0.045  Sum_probs=110.0

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 038522          403 WTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA  482 (590)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  482 (590)
                      |..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++++.+.  .+.+...+..+...+.
T Consensus        11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           11 YRDKGISHAKAGRYSQAVMLLEQVYDA-DAFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTTTCCT-TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHh-CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence            333444455555555555555555432 1224455555566666666666666666666643  1224556666666677


Q ss_pred             hcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 038522          483 RRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTR  560 (590)
Q Consensus       483 ~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  560 (590)
                      ..|++++|.+.++++  ..+.+...+..+...+...|++++|...++++++..|.++.++..++.+|...|++++|.+.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~  167 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF  167 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            777777777777666  223456677777888888888888888888888888888888888999999999999999998


Q ss_pred             HHhhhcCC
Q 038522          561 KLMEERSL  568 (590)
Q Consensus       561 ~~~~~~~~  568 (590)
                      +++.+...
T Consensus       168 ~~~~~~~~  175 (186)
T 3as5_A          168 KKANELDE  175 (186)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHcCC
Confidence            88877543

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.41  E-value=1.5e-09  Score=110.64  Aligned_cols=443  Identities=8%  Similarity=0.024  Sum_probs=246.2

Q ss_pred             HHHHHhhhC-CCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCC---hHHHHHHhcc
Q 038522           15 QALKFSLSC-PDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGD---VLSARKAFDR   90 (590)
Q Consensus        15 ~a~~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~a~~~~~~   90 (590)
                      +.+..|++. ...+-|...|..+++.+.+.+.+..+..+|+.++.. ++.+...|..-+..-.+.|.   ++.+..+|++
T Consensus        50 d~i~~lE~~l~~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR  128 (679)
T 4e6h_A           50 DVIGKLNDMIEEQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR  128 (679)
T ss_dssp             CHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence            344444444 445566777777777777777777777777777766 35566677777766666666   7777777776


Q ss_pred             CCC-----CCccchHHHHHHHHhcCCh--------HHHHHHHHHHHH-cCC-CCC-HhhHHHHHHHHh---------ccC
Q 038522           91 MPE-----RNVVSWTAMISGYAQNGYD--------ENALLVFSAMLR-SGV-RAN-QFTYSSALRACA---------RMR  145 (590)
Q Consensus        91 ~~~-----~~~~~~~~li~~~~~~~~~--------~~a~~~~~~m~~-~~~-~p~-~~~~~~ll~~~~---------~~~  145 (590)
                      ...     |++..|...+....+.++.        +...++|+.... -|. .|+ ...|...+....         ..+
T Consensus       129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~  208 (679)
T 4e6h_A          129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ  208 (679)
T ss_dssp             HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred             HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence            543     4555566655555444443        223356665543 244 343 345555554332         223


Q ss_pred             chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522          146 WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR  225 (590)
Q Consensus       146 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  225 (590)
                      +++.+..+|+.++......-..+|......--..+. ..+.+++.+                 ...+++.|...+.++..
T Consensus       209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e-----------------~~~~y~~Ar~~~~e~~~  270 (679)
T 4e6h_A          209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE-----------------LSAQYMNARSLYQDWLN  270 (679)
T ss_dssp             HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH-----------------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH-----------------hhHHHHHHHHHHHHHHH
Confidence            456666777766643211112222211111000000 001111100                 00011122222222110


Q ss_pred             --cCC----C-----------C-----C---hhhHHHHHHHhccCC-------ChhHHHHHHHHHHHhCCCCChhHHHHH
Q 038522          226 --QGM----K-----------P-----D---CFTLGSILRASVGGI-------ELMKISQIHDLIIKLGLESSNKLTGSL  273 (590)
Q Consensus       226 --~~~----~-----------p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l  273 (590)
                        .++    +           |     +   ...|...+.--...+       ..+.+..+|++.+..- +....+|...
T Consensus       271 ~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~-p~~~~lW~~y  349 (679)
T 4e6h_A          271 ITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV-CFAPEIWFNM  349 (679)
T ss_dssp             HTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHH
T ss_pred             HHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc-CCCHHHHHHH
Confidence              000    0           0     1   111222222111111       1233455666666542 4466677777


Q ss_pred             HHHHHhcCChHHHH-HHHHhccC--C-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcC---------CCCC-------
Q 038522          274 IDVYAKYGSIRSAY-QLYRSMLK--T-DIISCTALISGFARDDNHSKEAFDLFKDMILKK---------MGID-------  333 (590)
Q Consensus       274 ~~~~~~~g~~~~a~-~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~---------~~p~-------  333 (590)
                      +..+...|+.++|. .+|++...  | +...|-..+...-+.++ +++|..+|++++...         -.|+       
T Consensus       350 a~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~-~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~  428 (679)
T 4e6h_A          350 ANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTK-IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQ  428 (679)
T ss_dssp             HHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhh
Confidence            77777777777775 77777632  2 33345555566666677 778887777776531         0132       


Q ss_pred             -----HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-CChHHHHHHHHhcCC---CCcchHH
Q 038522          334 -----DVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS-GEIADANRAFDEMGD---KNVISWT  404 (590)
Q Consensus       334 -----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~---~~~~~~~  404 (590)
                           ...|...+....+.++.+.|..++..+.+........+|...+..-.+. ++++.|..+|+...+   .+...|.
T Consensus       429 ~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~  508 (679)
T 4e6h_A          429 LKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYIN  508 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHH
Confidence                 2357777777778888999999999888762222334444333333444 458999999988764   3555667


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHcCCCC--cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 038522          405 SLIAGYAKHGYGHEAIELYKKMKHEGMVP--NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLF  481 (590)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  481 (590)
                      ..+......|+.+.|..+|++.......+  ....|...+.--.+.|+.+.+.++.+++.+.   .|+......+++-|
T Consensus       509 ~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~---~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          509 KYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK---FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH---STTCCHHHHHHHHT
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCcHHHHHHHHh
Confidence            77777778899999999999988763222  3456777777777889999999999999876   45555555555544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.41  E-value=4.4e-12  Score=130.87  Aligned_cols=161  Identities=18%  Similarity=0.217  Sum_probs=141.9

Q ss_pred             cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHH
Q 038522          400 VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCV  477 (590)
Q Consensus       400 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l  477 (590)
                      ..+|+.|...+.+.|++++|++.|++..+.  .| +...+..+..++.+.|++++|++.|++..+.   .|+ ...+..+
T Consensus         9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~nL   83 (723)
T 4gyw_A            9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSNM   83 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence            456788888888899999999999998875  56 5778888899999999999999999999864   554 7788999


Q ss_pred             HHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 038522          478 VDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDN  555 (590)
Q Consensus       478 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  555 (590)
                      ..+|.+.|++++|++.|+++ .+.| +...|..+..++...|++++|++.|+++++++|+++.++..|+.+|...|++++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence            99999999999999999988 5555 567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhh
Q 038522          556 ARKTRKLMEE  565 (590)
Q Consensus       556 A~~~~~~~~~  565 (590)
                      |.+.++++.+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988765

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.39  E-value=1.2e-11  Score=121.05  Aligned_cols=263  Identities=13%  Similarity=0.013  Sum_probs=151.3

Q ss_pred             hccCCChhHHHHHHHHHHHhCCCCCh----hHHHHHHHHHHhcCChHHHHHHHHhccC---------CCccchHHHHHHH
Q 038522          242 SVGGIELMKISQIHDLIIKLGLESSN----KLTGSLIDVYAKYGSIRSAYQLYRSMLK---------TDIISCTALISGF  308 (590)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------~~~~~~~~l~~~~  308 (590)
                      +...|++++|...++.+.+.+.. +.    .++..+...|...|++++|...+++...         .....+..+...+
T Consensus        58 ~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~  136 (411)
T 4a1s_A           58 LCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTL  136 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHH
Confidence            34444444444444444443211 11    2445556666666666666666655421         0123455666667


Q ss_pred             HhcCCChHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHhchhh----------hHhHHHHHHHHHHhCCCcchhHHH
Q 038522          309 ARDDNHSKEAFDLFKDMILKK----MGI-DDVILCLMLNICANVAS----------LNLGRQIHAFAFKYQSSYDAAVGN  373 (590)
Q Consensus       309 ~~~~~~~~~a~~~~~~~~~~~----~~p-~~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~  373 (590)
                      ...|+ +++|...+++..+..    -.| ...++..+...+...|+          .+.+...                 
T Consensus       137 ~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~-----------------  198 (411)
T 4a1s_A          137 KVMGR-FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA-----------------  198 (411)
T ss_dssp             HHTTC-HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH-----------------
T ss_pred             HHCCC-HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH-----------------
Confidence            77777 777777777665431    011 11233334444444444          0000000                 


Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCC-----C----CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CCc----HHHHH
Q 038522          374 ALIDMYAKSGEIADANRAFDEMGD-----K----NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGM-VPN----DVTFL  439 (590)
Q Consensus       374 ~l~~~~~~~~~~~~A~~~~~~~~~-----~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~  439 (590)
                                 +++|...+++..+     .    ....+..+...+...|++++|...+++..+... .++    ...+.
T Consensus       199 -----------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  267 (411)
T 4a1s_A          199 -----------LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANS  267 (411)
T ss_dssp             -----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence                       4444444443321     1    123556666777777777777777777654210 011    23667


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CC------CC-CHhHHH
Q 038522          440 SLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NI------KP-TASLWS  507 (590)
Q Consensus       440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~~~~~  507 (590)
                      .+...+...|++++|...+++..+...-..+    ..++..+...|...|++++|.+.+++. ..      .+ ...++.
T Consensus       268 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  347 (411)
T 4a1s_A          268 NLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACW  347 (411)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHH
Confidence            7777888888888888888877654211111    456777888888889998888888876 11      11 134677


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          508 AILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      .+...+...|++++|...+++++++.+
T Consensus       348 ~la~~~~~~g~~~~A~~~~~~al~~~~  374 (411)
T 4a1s_A          348 SLGNAHSAIGGHERALKYAEQHLQLAX  374 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence            788888899999999999999988776

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.37  E-value=2.2e-11  Score=108.31  Aligned_cols=165  Identities=13%  Similarity=-0.005  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHH
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDL  480 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~  480 (590)
                      .+......+...|++++|+..|++..+....++...+..+..++...|++++|++.+++..+.   .|+ ...+..+..+
T Consensus         9 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~   85 (228)
T 4i17_A            9 QLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGKSAA   85 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHHHHH
Confidence            344444444445555555555555444321134444444444455555555555555555432   222 3344445555


Q ss_pred             HHhcCChHHHHHHHHhc-CCCC-CH-------hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC--CcchHHHHHHHHHh
Q 038522          481 FARRGQLESAYNMIRQM-NIKP-TA-------SLWSAILGACSIYGNTSLGELAARNLFDMEPE--KSVNYVVLSNIYTA  549 (590)
Q Consensus       481 ~~~~g~~~~A~~~~~~~-~~~p-~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~  549 (590)
                      |...|++++|++.+++. ...| +.       ..|..+...+...|++++|+..++++++.+|+  ++.++..++.+|..
T Consensus        86 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~  165 (228)
T 4i17_A           86 YRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN  165 (228)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence            55555555555555544 2222 22       23444444455555555555555555555555  45555555555555


Q ss_pred             cCCh---------------------------HHHHHHHHHhhhcCCc
Q 038522          550 AGAW---------------------------DNARKTRKLMEERSLR  569 (590)
Q Consensus       550 ~g~~---------------------------~~A~~~~~~~~~~~~~  569 (590)
                      .|+.                           ++|++.+++..+..+.
T Consensus       166 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~  212 (228)
T 4i17_A          166 NGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN  212 (228)
T ss_dssp             HHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence            5555                           9999999998886543

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.36  E-value=1.3e-10  Score=108.50  Aligned_cols=216  Identities=10%  Similarity=0.090  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------hhhh-------HhHHHHHHHHHHhCCCcchhHHHHHHHHHHh
Q 038522          316 KEAFDLFKDMILKKMGIDDVILCLMLNICAN-------VASL-------NLGRQIHAFAFKYQSSYDAAVGNALIDMYAK  381 (590)
Q Consensus       316 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-------~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  381 (590)
                      ++|...|++.+... +-+...|..+...+..       .|+.       +.|..+++...+.-.+-+...+..++..+.+
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            56666666666531 2233344444443332       2333       4555555555442111233444445555555


Q ss_pred             cCChHHHHHHHHhcCC--CC-cc-hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhh-ccCChHHHHH
Q 038522          382 SGEIADANRAFDEMGD--KN-VI-SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACS-HTGLTCEGWE  456 (590)
Q Consensus       382 ~~~~~~A~~~~~~~~~--~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~-~~~~~~~a~~  456 (590)
                      .|++++|..+|+++.+  |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++++|.+
T Consensus       112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~  190 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK  190 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5555555555554432  21 11 44444444444555555555555544431 112222222211111 1345555555


Q ss_pred             HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-C---CCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522          457 LFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-N---IKPT--ASLWSAILGACSIYGNTSLGELAARNLF  530 (590)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~---~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~  530 (590)
                      +|++..+..  +.+...+..++..+.+.|++++|..+|+++ .   ++|+  ...|..++......|+.+.|..+++++.
T Consensus       191 ~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          191 IFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            555544331  112344444444444555555555555444 1   1321  2334444444444455555555555555


Q ss_pred             cCCCC
Q 038522          531 DMEPE  535 (590)
Q Consensus       531 ~~~p~  535 (590)
                      +..|+
T Consensus       269 ~~~p~  273 (308)
T 2ond_A          269 TAFRE  273 (308)
T ss_dssp             HHTTT
T ss_pred             HHccc
Confidence            44443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.36  E-value=2.3e-11  Score=115.23  Aligned_cols=264  Identities=13%  Similarity=0.038  Sum_probs=149.2

Q ss_pred             hccCCChhHHHHHHHHHHHhCCCCC---hhHHHHHHHHHHhcCChHHHHHHHHhccC-----C----CccchHHHHHHHH
Q 038522          242 SVGGIELMKISQIHDLIIKLGLESS---NKLTGSLIDVYAKYGSIRSAYQLYRSMLK-----T----DIISCTALISGFA  309 (590)
Q Consensus       242 ~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~----~~~~~~~l~~~~~  309 (590)
                      +...|+++.|...++.+.+......   ..++..+...+...|++++|.+.+++...     .    ....+..+...+.
T Consensus        15 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~   94 (338)
T 3ro2_A           15 LCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLK   94 (338)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHH
Confidence            3344444444444444444321100   23444555566666666666666555411     0    1234555666677


Q ss_pred             hcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhchhh--------------------hHhHHHHHHHHHHhC
Q 038522          310 RDDNHSKEAFDLFKDMILKKM-GID----DVILCLMLNICANVAS--------------------LNLGRQIHAFAFKYQ  364 (590)
Q Consensus       310 ~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~~~  364 (590)
                      ..|+ +++|...+++..+... .++    ..++..+...+...|+                    ++.|...+...... 
T Consensus        95 ~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~-  172 (338)
T 3ro2_A           95 VLGN-FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSL-  172 (338)
T ss_dssp             HTTC-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHH-
T ss_pred             HccC-HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHH-
Confidence            7777 7777777777654210 111    1233344444444454                    44444333332211 


Q ss_pred             CCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC--CcchHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCC-cHHH
Q 038522          365 SSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK--NVISWTSLIAGYAKHGYGHEAIELYKKMKHE----GMVP-NDVT  437 (590)
Q Consensus       365 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~  437 (590)
                                                 ......+  ....+..+...+...|++++|...+++..+.    +..+ ...+
T Consensus       173 ---------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  225 (338)
T 3ro2_A          173 ---------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA  225 (338)
T ss_dssp             ---------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             ---------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence                                       0111000  1234556666777777777777777766542    1111 1236


Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CC------CC-CHhH
Q 038522          438 FLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NI------KP-TASL  505 (590)
Q Consensus       438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~------~p-~~~~  505 (590)
                      +..+...+...|++++|...+++..+...-.++    ..++..+...+...|++++|...++++ ..      .+ ...+
T Consensus       226 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  305 (338)
T 3ro2_A          226 YSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRA  305 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHH
Confidence            677777788888888888888877653211112    456677788888899999998888876 11      11 1346


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          506 WSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      +..+...+...|++++|...+++++++.+
T Consensus       306 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~  334 (338)
T 3ro2_A          306 CWSLGNAYTALGNHDQAMHFAEKHLEISR  334 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence            77788888999999999999999988776

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.34  E-value=5.8e-11  Score=114.65  Aligned_cols=222  Identities=9%  Similarity=-0.050  Sum_probs=157.3

Q ss_pred             HHhchhhhHhHHHHHHHHHHhCC--C---cchhHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC-----cchHHHHH
Q 038522          343 ICANVASLNLGRQIHAFAFKYQS--S---YDAAVGNALIDMYAKSGEIADANRAFDEMGD-----KN-----VISWTSLI  407 (590)
Q Consensus       343 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-----~~~~~~l~  407 (590)
                      .+...|+++.|...+..+.+...  .   ....++..+...|...|+++.|...+++..+     ++     ..+++.+.
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            34556666777766666654311  1   1245667778888888888888888776642     22     23677788


Q ss_pred             HHHHhcCCchHHHHHHHHHHHc----CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc---CCCCChhHHHHHHH
Q 038522          408 AGYAKHGYGHEAIELYKKMKHE----GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY---RILPRAEHFSCVVD  479 (590)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~~l~~  479 (590)
                      ..|...|++++|.+.+++..+.    +-.+ ...++..+..++...|++++|.+.+++..+..   +.+....++..+..
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~  269 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW  269 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence            8899999999999999887652    1111 23467778888999999999999999887621   11223667788889


Q ss_pred             HHHhcCChHHHHHHHHhc----CC--CC-CHhHHHHHHHHHHhcCC---chHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          480 LFARRGQLESAYNMIRQM----NI--KP-TASLWSAILGACSIYGN---TSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       480 ~~~~~g~~~~A~~~~~~~----~~--~p-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      .|.+.|++++|.+.+++.    ..  .| ....+..+...+...++   +.+|+..+++. ...|.....+..++.+|..
T Consensus       270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~  348 (378)
T 3q15_A          270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFES  348 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHH
Confidence            999999999999999887    11  22 22345555566667777   77777777762 2334455678889999999


Q ss_pred             cCChHHHHHHHHHhhh
Q 038522          550 AGAWDNARKTRKLMEE  565 (590)
Q Consensus       550 ~g~~~~A~~~~~~~~~  565 (590)
                      .|++++|.+.+++..+
T Consensus       349 ~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          349 SCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH
Confidence            9999999999998865

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.33  E-value=8.8e-11  Score=113.63  Aligned_cols=226  Identities=9%  Similarity=0.023  Sum_probs=159.4

Q ss_pred             HHHhcCCChHHHHHHHHHHHHcC-CCCC----HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCC------cchhHHHHH
Q 038522          307 GFARDDNHSKEAFDLFKDMILKK-MGID----DVILCLMLNICANVASLNLGRQIHAFAFKYQSS------YDAAVGNAL  375 (590)
Q Consensus       307 ~~~~~~~~~~~a~~~~~~~~~~~-~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~l  375 (590)
                      .+...|+ +++|...+++....- -.++    ..++..+...+...|+++.|...+....+....      ....+++.+
T Consensus       112 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  190 (383)
T 3ulq_A          112 YELDQRE-YLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF  190 (383)
T ss_dssp             HHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred             HHHHhcC-HHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            3445555 666666666655421 0111    234555556666666777666666665542111      124567778


Q ss_pred             HHHHHhcCChHHHHHHHHhcCC-----CCc----chHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCC-cHHHHHHH
Q 038522          376 IDMYAKSGEIADANRAFDEMGD-----KNV----ISWTSLIAGYAKHGYGHEAIELYKKMKHE----GMVP-NDVTFLSL  441 (590)
Q Consensus       376 ~~~~~~~~~~~~A~~~~~~~~~-----~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~l  441 (590)
                      ...|...|++++|...|++..+     ++.    .++..+...|...|++++|...+++..+.    +..| ...++..+
T Consensus       191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l  270 (383)
T 3ulq_A          191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI  270 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence            8888999999999998887752     221    37788899999999999999999988762    3324 46678889


Q ss_pred             HHHhhccCChHHHHHHHHHHHhhcC---CCCChhHHHHHHHHHHhcCC---hHHHHHHHHhcCCCCC-HhHHHHHHHHHH
Q 038522          442 LFACSHTGLTCEGWELFTDMINKYR---ILPRAEHFSCVVDLFARRGQ---LESAYNMIRQMNIKPT-ASLWSAILGACS  514 (590)
Q Consensus       442 l~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~  514 (590)
                      ...+...|++++|...+++..+...   .+.....+..+...|...|+   +++|+.++++.+..|+ ...+..+...|.
T Consensus       271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~  350 (383)
T 3ulq_A          271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKYYH  350 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999998875421   11123335667788888898   8999999999854444 346778889999


Q ss_pred             hcCCchHHHHHHHHHhcCC
Q 038522          515 IYGNTSLGELAARNLFDME  533 (590)
Q Consensus       515 ~~~~~~~a~~~~~~~~~~~  533 (590)
                      ..|++++|...+++++++.
T Consensus       351 ~~g~~~~A~~~~~~al~~~  369 (383)
T 3ulq_A          351 ERKNFQKASAYFLKVEQVR  369 (383)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHH
Confidence            9999999999999998543

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.33  E-value=1.9e-11  Score=121.44  Aligned_cols=180  Identities=8%  Similarity=-0.043  Sum_probs=158.0

Q ss_pred             ChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCc-hHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHH
Q 038522          384 EIADANRAFDEMGD---KNVISWTSLIAGYAKHGYG-HEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELF  458 (590)
Q Consensus       384 ~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~-~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~  458 (590)
                      .++++...+++...   .+...+..+...+...|++ ++|++.|++..+.  .| +...+..+..++...|++++|.+.|
T Consensus        83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~  160 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL--EPELVEAWNQLGEVYWKKGDVTSAHTCF  160 (474)
T ss_dssp             HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35666666665543   3567888899999999999 9999999999986  45 5788999999999999999999999


Q ss_pred             HHHHhhcCCCCChhHHHHHHHHHHhc---------CChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc--------CCc
Q 038522          459 TDMINKYRILPRAEHFSCVVDLFARR---------GQLESAYNMIRQM-NIKP-TASLWSAILGACSIY--------GNT  519 (590)
Q Consensus       459 ~~~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------~~~  519 (590)
                      ++..+   ..|+...+..+...|...         |++++|++.++++ ...| +...|..+..+|...        |++
T Consensus       161 ~~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~  237 (474)
T 4abn_A          161 SGALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKIS  237 (474)
T ss_dssp             HHHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence            99994   468888899999999999         9999999999998 4444 578899999999988        999


Q ss_pred             hHHHHHHHHHhcCCC---CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          520 SLGELAARNLFDMEP---EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       520 ~~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ++|+..++++++++|   .++.+|..++.+|...|++++|.+.+++..+..+
T Consensus       238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p  289 (474)
T 4abn_A          238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP  289 (474)
T ss_dssp             HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            999999999999999   9999999999999999999999999999987653

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.33  E-value=3.2e-10  Score=105.88  Aligned_cols=179  Identities=11%  Similarity=0.067  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchh-HHHHHHHHHHhcCChHHHHHHHH
Q 038522          316 KEAFDLFKDMILKKMGI-DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAA-VGNALIDMYAKSGEIADANRAFD  393 (590)
Q Consensus       316 ~~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~  393 (590)
                      ++|..+|++.+.. +.| +...+..+...+...|+++.|..+++.+.+..+. +.. ++..++..+.+.|++++|..+|+
T Consensus        81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~  158 (308)
T 2ond_A           81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            5555555555542 122 2234445555555555555555555555553322 122 45555555555555555555555


Q ss_pred             hcCCC---CcchHHHHHHHHH-hcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC
Q 038522          394 EMGDK---NVISWTSLIAGYA-KHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP  469 (590)
Q Consensus       394 ~~~~~---~~~~~~~l~~~~~-~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  469 (590)
                      +..+.   +...|........ ..|++++|..+|++..+. .+-+...+..++..+.+.|++++|..+|++......++|
T Consensus       159 ~a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p  237 (308)
T 2ond_A          159 KAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCH
Confidence            54431   1112222211111 145555555555555543 112344455555555555555555555555554211233


Q ss_pred             --ChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          470 --RAEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       470 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                        ....|..++..+.+.|+.++|..+++++
T Consensus       238 ~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          238 EKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence              2334555555555555555555555554

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.32  E-value=6.7e-11  Score=105.20  Aligned_cols=204  Identities=12%  Similarity=0.052  Sum_probs=137.5

Q ss_pred             CCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHH
Q 038522          332 IDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIA  408 (590)
Q Consensus       332 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~  408 (590)
                      .|+..+......+...|++++|...++...+..++++...+..+..++...|++++|...|++..+  | +...|..+..
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            345666677777778888888888888887777645666666677777888888888888877653  2 3446777777


Q ss_pred             HHHhcCCchHHHHHHHHHHHcCCCC-cH-------HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC---hhHHHHH
Q 038522          409 GYAKHGYGHEAIELYKKMKHEGMVP-ND-------VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR---AEHFSCV  477 (590)
Q Consensus       409 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~-------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l  477 (590)
                      .+...|++++|+..+++..+.  .| +.       ..|..+...+...|++++|++.|++..+   ..|+   ...+..+
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l  159 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL  159 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence            778888888888888877764  34 33       3466666677777888888888887774   3454   4556666


Q ss_pred             HHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          478 VDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       478 ~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                      ..+|...|+.     .++++ .+ ..+...+....  ....+.+++|+..++++++++|+++.+...+..+.
T Consensus       160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~  224 (228)
T 4i17_A          160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVK  224 (228)
T ss_dssp             HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence            6666554432     22332 11 12233333332  23456679999999999999999988888777654

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.30  E-value=1.5e-10  Score=98.92  Aligned_cols=168  Identities=13%  Similarity=0.014  Sum_probs=143.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHh
Q 038522          369 AAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFAC  445 (590)
Q Consensus       369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~  445 (590)
                      ...+..+...+...|++++|...++++.+   .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~   86 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY   86 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            44566778889999999999999999875   355678888999999999999999999998862 34678888889999


Q ss_pred             hccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHH
Q 038522          446 SHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGE  523 (590)
Q Consensus       446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~  523 (590)
                      ...|++++|.+.++++.+.  .+.+...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++|.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            9999999999999999875  2446778888999999999999999999998 33 346778899999999999999999


Q ss_pred             HHHHHHhcCCCCCcch
Q 038522          524 LAARNLFDMEPEKSVN  539 (590)
Q Consensus       524 ~~~~~~~~~~p~~~~~  539 (590)
                      ..++++++..|+++..
T Consensus       165 ~~~~~~~~~~~~~~~~  180 (186)
T 3as5_A          165 PHFKKANELDEGASVE  180 (186)
T ss_dssp             HHHHHHHHHHHCCCGG
T ss_pred             HHHHHHHHcCCCchhh
Confidence            9999999988866544

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.30  E-value=1.5e-09  Score=104.58  Aligned_cols=193  Identities=13%  Similarity=0.036  Sum_probs=96.1

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhcCC-------C----CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC--C--cHHH
Q 038522          373 NALIDMYAKSGEIADANRAFDEMGD-------K----NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV--P--NDVT  437 (590)
Q Consensus       373 ~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~  437 (590)
                      ..+...+...|++++|...+++..+       +    ....+..+...+...|++++|...+++.......  |  ...+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            3444555555666555555554431       1    0123344555556666666666666665543111  1  1234


Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHH-----HHHHHHHhcCChHHHHHHHHhc-CCCCC-----HhHH
Q 038522          438 FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFS-----CVVDLFARRGQLESAYNMIRQM-NIKPT-----ASLW  506 (590)
Q Consensus       438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~-~~~p~-----~~~~  506 (590)
                      +..+...+...|++++|...+++.............+.     ..+..+...|++++|...+++. ...|.     ...+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            55555556666666666666666554311111111111     1223355666666666666665 21111     1134


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCC-----C-cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          507 SAILGACSIYGNTSLGELAARNLFDMEPE-----K-SVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ..+...+...|++++|...++++....+.     + ...+..++.++...|++++|...+++..+
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            44555566666666666666666543221     1 12455556666666666666666665544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.27  E-value=1.2e-11  Score=115.94  Aligned_cols=241  Identities=14%  Similarity=0.084  Sum_probs=138.8

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhccC--------CC---ccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH
Q 038522          266 SNKLTGSLIDVYAKYGSIRSAYQLYRSMLK--------TD---IISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDD  334 (590)
Q Consensus       266 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~---~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~  334 (590)
                      ...++..+...+...|++++|..+|+++..        .+   ...+..+...+...|+ +++|...+++.....     
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~-----   99 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK-YKDAANLLNDALAIR-----   99 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHH-----
Confidence            344566666677777777777766655522        11   1233344444444444 555555554443220     


Q ss_pred             HHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-------C----CcchH
Q 038522          335 VILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD-------K----NVISW  403 (590)
Q Consensus       335 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~  403 (590)
                                             ........+.....+..+...|...|++++|...+++..+       +    ....+
T Consensus       100 -----------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  156 (311)
T 3nf1_A          100 -----------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL  156 (311)
T ss_dssp             -----------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             -----------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHH
Confidence                                   0000000122345566667777777777777777776542       1    22356


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHc------CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc------CCCCC
Q 038522          404 TSLIAGYAKHGYGHEAIELYKKMKHE------GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY------RILPR  470 (590)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~  470 (590)
                      ..+...+...|++++|.+.++++.+.      +..| ...++..+...+...|++++|.+.++++.+..      ...+.
T Consensus       157 ~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  236 (311)
T 3nf1_A          157 NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDE  236 (311)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC-----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcc
Confidence            77788888888888888888887764      2234 34567788888899999999999998887531      11111


Q ss_pred             h-------hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          471 A-------EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       471 ~-------~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                      .       ..+..+...+...+.+.+|...++.. ...| +..++..+...|...|++++|...+++++++.|+
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~  310 (311)
T 3nf1_A          237 NKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ  310 (311)
T ss_dssp             -CCHHHHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence            1       11222233344455666667777776 2334 4567888999999999999999999999988773

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.23  E-value=1.7e-09  Score=97.64  Aligned_cols=244  Identities=10%  Similarity=0.023  Sum_probs=119.5

Q ss_pred             HHHHHhcCChHHHHHHHHhccCCCccc-hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHh
Q 038522          274 IDVYAKYGSIRSAYQLYRSMLKTDIIS-CTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNL  352 (590)
Q Consensus       274 ~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~  352 (590)
                      ++-..-.|.+..++.-...+...+... -.-+.+++...|+ +...         ..-.|....+..+..-+ ..+    
T Consensus        20 ikn~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~-~~~~---------~~~~~~~~a~~~la~~~-~~~----   84 (310)
T 3mv2_B           20 IKQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQ-YQSQ---------DPTSKLGKVLDLYVQFL-DTK----   84 (310)
T ss_dssp             HHHHHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTC-CCCC---------CSSSTTHHHHHHHHHHH-TTT----
T ss_pred             HHHHHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCC-CccC---------CCCCHHHHHHHHHHHHh-ccc----
Confidence            344556788888887655553322222 2223356666665 4421         01122222222222222 211    


Q ss_pred             HHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC-----CcchHHHHHHHHHhcCCchHHHHHHHHHH
Q 038522          353 GRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK-----NVISWTSLIAGYAKHGYGHEAIELYKKMK  427 (590)
Q Consensus       353 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~  427 (590)
                      +...++.....+ .++......+..++...|++++|++++.+...+     +...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            444555544443 223333345566666666666666666665322     22345555666666666666666666665


Q ss_pred             HcCCCC-----cHHHHHHHHHH--hhccC--ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522          428 HEGMVP-----NDVTFLSLLFA--CSHTG--LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-  497 (590)
Q Consensus       428 ~~g~~p-----~~~~~~~ll~~--~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-  497 (590)
                      +.  .|     +..+...+..+  ....|  ++.+|..+|+++.+.   .|+..+-..+..++.+.|++++|.+.++.+ 
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~  238 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL  238 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            53  45     23444444444  22222  566666666666543   333222223333566666666666666544 


Q ss_pred             CC-----------CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522          498 NI-----------KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY  540 (590)
Q Consensus       498 ~~-----------~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  540 (590)
                      ..           +.++.++..++......|+  .|.++++++.+..|++|...
T Consensus       239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~  290 (310)
T 3mv2_B          239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAFIK  290 (310)
T ss_dssp             SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHH
T ss_pred             HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChHHH
Confidence            11           2234444344433344454  55666666666666555443

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.22  E-value=1.7e-10  Score=106.32  Aligned_cols=197  Identities=15%  Similarity=0.171  Sum_probs=123.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCC-------C----CcchHHHHHHHHHhcCCchHHHHHHHHHHHc------CC
Q 038522          369 AAVGNALIDMYAKSGEIADANRAFDEMGD-------K----NVISWTSLIAGYAKHGYGHEAIELYKKMKHE------GM  431 (590)
Q Consensus       369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~  431 (590)
                      ..++..+...|...|++++|...++++.+       +    ...++..+...+...|++++|...+++..+.      .-
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            44555566666666666666666665431       1    1235666777777777777777777776653      11


Q ss_pred             CC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc-----CCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-C-----
Q 038522          432 VP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY-----RILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-N-----  498 (590)
Q Consensus       432 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~-----  498 (590)
                      .| ...++..+...+...|++++|...++++.+..     +..| ...++..+...|...|++++|.+.++++ .     
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            23 35567777788888888888888888876531     1122 2456777888888888888888888776 1     


Q ss_pred             ----CCCC-HhHHHHHHHHHHhcCC------chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          499 ----IKPT-ASLWSAILGACSIYGN------TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       499 ----~~p~-~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                          ..+. ...|..+...+...+.      +..+...++......|..+.++..++.+|...|++++|.+++++..+
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                1222 2334444333333222      33334444444444566677899999999999999999999998765

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.22  E-value=3.7e-10  Score=104.41  Aligned_cols=190  Identities=11%  Similarity=-0.012  Sum_probs=130.4

Q ss_pred             HHHHHhcCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC---CC--cHHHHHHH
Q 038522          376 IDMYAKSGEIADANRAFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM---VP--NDVTFLSL  441 (590)
Q Consensus       376 ~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p--~~~~~~~l  441 (590)
                      ...|...|++++|...|++..+     .+    ..+|+.+...|...|++++|+..+++..+...   .+  -..++..+
T Consensus        44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  123 (292)
T 1qqe_A           44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (292)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3456667777777777765542     11    34677788888888888888888887765310   11  13567788


Q ss_pred             HHHhhcc-CChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH--------hHHH
Q 038522          442 LFACSHT-GLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA--------SLWS  507 (590)
Q Consensus       442 l~~~~~~-~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~~~  507 (590)
                      ...|... |++++|+..|++..+...-..+    ..++..+...+.+.|++++|+..|++. ...|+.        ..+.
T Consensus       124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  203 (292)
T 1qqe_A          124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (292)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence            8888885 9999999999988764211111    356788889999999999999999987 333322        1466


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCCCCcch-----HHHHHHHHH--hcCChHHHHHHHHHhhh
Q 038522          508 AILGACSIYGNTSLGELAARNLFDMEPEKSVN-----YVVLSNIYT--AAGAWDNARKTRKLMEE  565 (590)
Q Consensus       508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~~~  565 (590)
                      .+...+...|+++.|+..++++++++|.....     +..++.+|.  ..+++++|++.++.+..
T Consensus       204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence            77778889999999999999999999965543     344566664  45778888888876543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.17  E-value=3.3e-09  Score=102.23  Aligned_cols=225  Identities=10%  Similarity=0.063  Sum_probs=162.1

Q ss_pred             HHHhcCCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCC-----C-cchhHHHHH
Q 038522          307 GFARDDNHSKEAFDLFKDMILKKM-GID----DVILCLMLNICANVASLNLGRQIHAFAFKYQS-----S-YDAAVGNAL  375 (590)
Q Consensus       307 ~~~~~~~~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~~l  375 (590)
                      .+...|+ +++|+..|++...... .++    ..++..+...+...|+++.|...+....+...     . ....+++.+
T Consensus       110 ~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l  188 (378)
T 3q15_A          110 YEFDQKE-YVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVI  188 (378)
T ss_dssp             HHHHTTC-HHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHH
T ss_pred             HHHHHCC-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHH
Confidence            3455666 7777777777664311 122    23455666677777888888877777655311     1 124567788


Q ss_pred             HHHHHhcCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCCcHHHHHHHH
Q 038522          376 IDMYAKSGEIADANRAFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHE----GMVPNDVTFLSLL  442 (590)
Q Consensus       376 ~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ll  442 (590)
                      ...|...|++++|...|++..+     ++    ..++..+...+...|++++|...+++..+.    +.+....++..+.
T Consensus       189 g~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  268 (378)
T 3q15_A          189 AGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLS  268 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHH
Confidence            8889999999999998887652     22    236778888999999999999999988761    2222467788888


Q ss_pred             HHhhccCChHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhcCC---hHHHHHHHHhcCCCCC-HhHHHHHHHHHHh
Q 038522          443 FACSHTGLTCEGWELFTDMINKYRILPR---AEHFSCVVDLFARRGQ---LESAYNMIRQMNIKPT-ASLWSAILGACSI  515 (590)
Q Consensus       443 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~p~-~~~~~~l~~~~~~  515 (590)
                      ..+.+.|++++|...+++..+...-.++   ...+..+...+...|+   +.+|+..+++.+..|+ ...+..+...|..
T Consensus       269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~  348 (378)
T 3q15_A          269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFES  348 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHH
Confidence            9999999999999999998875322122   3445566667777888   8899999998754443 3456778889999


Q ss_pred             cCCchHHHHHHHHHhcC
Q 038522          516 YGNTSLGELAARNLFDM  532 (590)
Q Consensus       516 ~~~~~~a~~~~~~~~~~  532 (590)
                      .|++++|...++++++.
T Consensus       349 ~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          349 SCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHH
Confidence            99999999999998754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.17  E-value=4.6e-10  Score=103.81  Aligned_cols=172  Identities=10%  Similarity=-0.010  Sum_probs=118.1

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhc-CCchHHHHHHHHHHHcCCCC---c--
Q 038522          370 AVGNALIDMYAKSGEIADANRAFDEMGD-----KN----VISWTSLIAGYAKH-GYGHEAIELYKKMKHEGMVP---N--  434 (590)
Q Consensus       370 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~-~~~~~a~~~~~~m~~~g~~p---~--  434 (590)
                      .+++.+..+|.+.|++++|+..|++..+     .+    ..+++.+...|... |++++|+..|++..+.  .|   +  
T Consensus        78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~  155 (292)
T 1qqe_A           78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVA  155 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChH
Confidence            3455566666666666666666665542     11    23677788888886 9999999999988763  22   1  


Q ss_pred             --HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh-----hHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHh--
Q 038522          435 --DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA-----EHFSCVVDLFARRGQLESAYNMIRQM-NIKPTAS--  504 (590)
Q Consensus       435 --~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~--  504 (590)
                        ..++..+...+...|++++|+..|++..+...-.+..     ..+..+..++...|++++|...|++. .+.|+..  
T Consensus       156 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~  235 (292)
T 1qqe_A          156 LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS  235 (292)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence              3567888889999999999999999998652111111     15677888899999999999999998 5556432  


Q ss_pred             ----HHHHHHHHHH--hcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522          505 ----LWSAILGACS--IYGNTSLGELAARNLFDMEPEKSVNYVVL  543 (590)
Q Consensus       505 ----~~~~l~~~~~--~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  543 (590)
                          .+..++.++.  ..+++++|+..|+++..++|.....+..+
T Consensus       236 ~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~~~~~~~~  280 (292)
T 1qqe_A          236 RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWKITILNKI  280 (292)
T ss_dssp             --HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence                2344555554  45678999999999999998554444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.17  E-value=7.9e-10  Score=100.48  Aligned_cols=183  Identities=13%  Similarity=0.013  Sum_probs=101.7

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC-CC-cHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD--KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM-VP-NDVTFL  439 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~  439 (590)
                      +...+..+...+.+.|++++|...|+++.+  |+    ...+..+..++.+.|++++|+..|++..+... .| ....+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            344445555556666666666666666552  22    23455555666666666666666666665411 11 133444


Q ss_pred             HHHHHhhc--------cCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHH
Q 038522          440 SLLFACSH--------TGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAIL  510 (590)
Q Consensus       440 ~ll~~~~~--------~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~  510 (590)
                      .+..++..        .|++++|...|+++.+.   .|+ ......+.......++.               ...+..+.
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la  155 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAA  155 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHH
Confidence            45555555        56666666666666654   222 11111110000000000               01124556


Q ss_pred             HHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhc----------CChHHHHHHHHHhhhcCC
Q 038522          511 GACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAA----------GAWDNARKTRKLMEERSL  568 (590)
Q Consensus       511 ~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~  568 (590)
                      ..+...|+++.|+..++++++..|++   +.++..++.+|...          |++++|+..++++.+..+
T Consensus       156 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p  226 (261)
T 3qky_A          156 RLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP  226 (261)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC
Confidence            67777888888888888888777763   34677777777766          777888888887776553

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.16  E-value=2.7e-09  Score=94.38  Aligned_cols=184  Identities=12%  Similarity=0.057  Sum_probs=113.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCc----chHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH----HHH
Q 038522          369 AAVGNALIDMYAKSGEIADANRAFDEMGD--KNV----ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND----VTF  438 (590)
Q Consensus       369 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~  438 (590)
                      +..+..+...+.+.|++++|...|+++.+  |+.    ..+..+..++.+.|++++|+..|+++.+.  .|+.    ..+
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~   81 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVM   81 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHH
Confidence            33445556667777777777777777652  321    34566667777777777777777777764  3321    133


Q ss_pred             HHHHHHhhc------------------cCChHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhcCC
Q 038522          439 LSLLFACSH------------------TGLTCEGWELFTDMINKYRILPRA-EHFSCVVDLFARRGQLESAYNMIRQMNI  499 (590)
Q Consensus       439 ~~ll~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~  499 (590)
                      ..+..++..                  .|++++|...|+++.+.   .|+. ..........    ....      ..  
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~----~~~~------~~--  146 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLV----FLKD------RL--  146 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHH----HHHH------HH--
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHH----HHHH------HH--
Confidence            333333332                  34455555555555532   2221 1111110000    0000      00  


Q ss_pred             CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCC
Q 038522          500 KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS---VNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNP  572 (590)
Q Consensus       500 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  572 (590)
                         ......+...+...|+++.|+..++++++..|+++   .++..++.+|.+.|++++|++.++.+...++....
T Consensus       147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence               00113456678899999999999999999999776   56999999999999999999999999887765543

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.14  E-value=9.4e-10  Score=88.26  Aligned_cols=128  Identities=16%  Similarity=0.212  Sum_probs=89.7

Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHh
Q 038522          438 FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSI  515 (590)
Q Consensus       438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~  515 (590)
                      +..+...+...|++++|..+++++.+.  .+.+...+..+...+...|++++|...++++ .. +.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            444555566666666666666666643  1224555666666666777777777777666 22 3345566777777788


Q ss_pred             cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          516 YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       516 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      .|++++|...++++.+..|.++..+..++.+|...|++++|.+.++++.+..
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            8888888888888888888778888888888888888888888888876644

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.11  E-value=1.1e-09  Score=113.08  Aligned_cols=162  Identities=16%  Similarity=0.178  Sum_probs=140.4

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLF  443 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~  443 (590)
                      +...++.+...|.+.|++++|+..|++..+  | +..+|..+..+|.+.|++++|+..|++..+.  .| +...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            467788899999999999999999998763  3 5678899999999999999999999999885  56 5788999999


Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCch
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTS  520 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~  520 (590)
                      ++...|++++|++.|++..+.   .|+ ...+..+..+|.+.|++++|++.|+++ .+.| +...+..+...+...|+++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence            999999999999999999864   554 788999999999999999999999998 5556 4678899999999999999


Q ss_pred             HHHHHHHHHhcCCC
Q 038522          521 LGELAARNLFDMEP  534 (590)
Q Consensus       521 ~a~~~~~~~~~~~p  534 (590)
                      +|.+.+++++++.|
T Consensus       163 ~A~~~~~kal~l~~  176 (723)
T 4gyw_A          163 DYDERMKKLVSIVA  176 (723)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCh
Confidence            99999999986544

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.11  E-value=1.9e-10  Score=94.34  Aligned_cols=140  Identities=9%  Similarity=-0.013  Sum_probs=104.7

Q ss_pred             HHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcC
Q 038522          408 AGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRG  485 (590)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  485 (590)
                      ..+...|++++|+..+++....  .| ++..+..+...|.+.|++++|++.|++..+.   .| +...|..+..+|.+.|
T Consensus         5 ~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            5 SMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             --CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcC
Confidence            3444566777888877776653  34 3445566777788888888888888888864   44 4677888888888888


Q ss_pred             ChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHH-HHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522          486 QLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGEL-AARNLFDMEPEKSVNYVVLSNIYTAAGA  552 (590)
Q Consensus       486 ~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~  552 (590)
                      ++++|+..|++. .+.| ++..|..+...+...|++++|.. .++++++++|+++.+|.....++...|+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            888888888887 4455 46778888888888888876555 4688999999888888888888888775

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.11  E-value=2.6e-09  Score=97.10  Aligned_cols=205  Identities=13%  Similarity=0.068  Sum_probs=147.2

Q ss_pred             CCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCc--chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CC----cchH
Q 038522          332 IDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSY--DAAVGNALIDMYAKSGEIADANRAFDEMGD--KN----VISW  403 (590)
Q Consensus       332 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~----~~~~  403 (590)
                      .+...+......+...|+++.|...++.+.+..+..  ....+..+..+|.+.|++++|...|+++.+  |+    ...+
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            455667777888899999999999999999876442  166778899999999999999999999873  32    2356


Q ss_pred             HHHHHHHHh--------cCCchHHHHHHHHHHHcCCCCcH-HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHH
Q 038522          404 TSLIAGYAK--------HGYGHEAIELYKKMKHEGMVPND-VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHF  474 (590)
Q Consensus       404 ~~l~~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~  474 (590)
                      ..+..++..        .|++++|+..|+++.+.  .|+. .....+              ..+..+...     -...+
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~--------------~~~~~~~~~-----~~~~~  151 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDAT--------------QKIRELRAK-----LARKQ  151 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHH--------------HHHHHHHHH-----HHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHH--------------HHHHHHHHH-----HHHHH
Confidence            777888888        99999999999999985  4532 222111              111111111     01224


Q ss_pred             HHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhc----------CCchHHHHHHHHHhcCCCCCcch
Q 038522          475 SCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIY----------GNTSLGELAARNLFDMEPEKSVN  539 (590)
Q Consensus       475 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~  539 (590)
                      ..+...|.+.|++++|+..|+++ ...|+    ...+..+..+|...          |++++|+..++++++..|+++.+
T Consensus       152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~  231 (261)
T 3qky_A          152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL  231 (261)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence            56777888899999999999887 33343    34667777777755          88999999999999999977543


Q ss_pred             ---HHHHHHHHHhcCChHHHH
Q 038522          540 ---YVVLSNIYTAAGAWDNAR  557 (590)
Q Consensus       540 ---~~~l~~~~~~~g~~~~A~  557 (590)
                         ...+..++...|+++++.
T Consensus       232 ~~a~~~l~~~~~~~~~~~~~~  252 (261)
T 3qky_A          232 RTAEELYTRARQRLTELEGDA  252 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCT
T ss_pred             HHHHHHHHHHHHHHHHhhhhh
Confidence               445566666666555443

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.10  E-value=9.6e-08  Score=91.81  Aligned_cols=48  Identities=13%  Similarity=0.166  Sum_probs=22.9

Q ss_pred             HHhcCChHHHHHHHHhcCCCCc-------chHHHHHHHHHhcCCchHHHHHHHHH
Q 038522          379 YAKSGEIADANRAFDEMGDKNV-------ISWTSLIAGYAKHGYGHEAIELYKKM  426 (590)
Q Consensus       379 ~~~~~~~~~A~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m  426 (590)
                      +...|++++|...+++...+..       ..+..+...+...|++++|...+++.
T Consensus       225 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  279 (373)
T 1hz4_A          225 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEEL  279 (373)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4455666666665555543211       02233444444555555555555444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.10  E-value=1.8e-08  Score=90.92  Aligned_cols=239  Identities=9%  Similarity=0.004  Sum_probs=160.5

Q ss_pred             HHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHH
Q 038522          308 FARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIAD  387 (590)
Q Consensus       308 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  387 (590)
                      ..-.|. +..++.-...+   .-..+......+.+++...|+....         ....|.......+.. |...+    
T Consensus        23 ~fy~G~-yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~----   84 (310)
T 3mv2_B           23 NYYTGN-FVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK----   84 (310)
T ss_dssp             HHTTTC-HHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT----
T ss_pred             HHHhhH-HHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc----
Confidence            334566 77777633222   1112223333445666666665531         122333333333333 33322    


Q ss_pred             HHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 038522          388 ANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMIN  463 (590)
Q Consensus       388 A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  463 (590)
                      |...|++...   ++..++..+..++...|++++|++++.+.+..|-.+ +...+..++..+.+.|+.+.|.+.+++|.+
T Consensus        85 a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~  164 (310)
T 3mv2_B           85 NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN  164 (310)
T ss_dssp             CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            6777777653   445556677888888999999999999887654322 566777888889999999999999999985


Q ss_pred             hcCCCC-----ChhHHHHHHHH--HHhcC--ChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcC-
Q 038522          464 KYRILP-----RAEHFSCVVDL--FARRG--QLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDM-  532 (590)
Q Consensus       464 ~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-  532 (590)
                      .   .|     +..+...|+.+  ....|  ++.+|..+|+++ ...|+..+-..++.++...|++++|++.++.+.+. 
T Consensus       165 ~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~  241 (310)
T 3mv2_B          165 A---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDY  241 (310)
T ss_dssp             H---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHH
T ss_pred             c---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            4   66     35566666655  33334  899999999998 54565334444555788899999999999987775 


Q ss_pred             ---------CCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          533 ---------EPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       533 ---------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                               +|+++.++..++.+....|+  +|.++++++++..+.
T Consensus       242 p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~  285 (310)
T 3mv2_B          242 YSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE  285 (310)
T ss_dssp             HHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred             ccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence                     48888889888888888887  888999988886643

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.09  E-value=2.7e-09  Score=98.07  Aligned_cols=200  Identities=11%  Similarity=0.052  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHhchhhhHhHHHHHHHHHHh------CC-CcchhHHHHHHHHHHhcCChHHHHHHHHhcCC-------C-
Q 038522          334 DVILCLMLNICANVASLNLGRQIHAFAFKY------QS-SYDAAVGNALIDMYAKSGEIADANRAFDEMGD-------K-  398 (590)
Q Consensus       334 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~-  398 (590)
                      ..++..+...+...|+++.|...+..+.+.      +. +....++..+...|...|++++|...+++..+       + 
T Consensus        43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  122 (283)
T 3edt_B           43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF  122 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC
Confidence            345556666666777777777776666553      22 22456677788888888888888888887652       2 


Q ss_pred             ---CcchHHHHHHHHHhcCCchHHHHHHHHHHHc------CCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc---
Q 038522          399 ---NVISWTSLIAGYAKHGYGHEAIELYKKMKHE------GMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY---  465 (590)
Q Consensus       399 ---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---  465 (590)
                         ...++..+...+...|++++|...+++..+.      +-.| ...++..+...+...|++++|...++++.+..   
T Consensus       123 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~  202 (283)
T 3edt_B          123 HPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEK  202 (283)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence               2346777888899999999999999988764      2233 35678888889999999999999999887641   


Q ss_pred             ---CCCCC-hhHHHHHHHHHHhcC------ChHHHHHHHHhcC-CCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038522          466 ---RILPR-AEHFSCVVDLFARRG------QLESAYNMIRQMN-IKP-TASLWSAILGACSIYGNTSLGELAARNLFDME  533 (590)
Q Consensus       466 ---~~~~~-~~~~~~l~~~~~~~g------~~~~A~~~~~~~~-~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  533 (590)
                         ...+. ...+..+...+...+      .+.++...++..+ ..| ...++..+...|...|++++|...++++++..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  282 (283)
T 3edt_B          203 EFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR  282 (283)
T ss_dssp             HSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence               11222 333444444444333      3444455555552 223 34567888899999999999999999988653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.05  E-value=4.1e-09  Score=96.96  Aligned_cols=174  Identities=9%  Similarity=-0.073  Sum_probs=137.4

Q ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc
Q 038522          387 DANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY  465 (590)
Q Consensus       387 ~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  465 (590)
                      .....+......+...+..+...+...|++++|...|++..+.  .| +...+..+...+...|++++|...++++... 
T Consensus       104 ~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-  180 (287)
T 3qou_A          104 AIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-  180 (287)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-
T ss_pred             HHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-
Confidence            3344444444444556667778888999999999999998885  45 6678888888999999999999999988754 


Q ss_pred             CCCCChhHHHH-HHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC--cchH
Q 038522          466 RILPRAEHFSC-VVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK--SVNY  540 (590)
Q Consensus       466 ~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~  540 (590)
                        .|+...... ....+...++.++|.+.+++. ...| +...+..+...+...|++++|+..++++++.+|++  ..++
T Consensus       181 --~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~  258 (287)
T 3qou_A          181 --DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTR  258 (287)
T ss_dssp             --GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHH
T ss_pred             --hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHH
Confidence              455443322 233466778888899988887 3344 67788899999999999999999999999999977  7889


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          541 VVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       541 ~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ..++.+|...|+.++|...+++...
T Consensus       259 ~~l~~~~~~~g~~~~a~~~~r~al~  283 (287)
T 3qou_A          259 XTFQEILAALGTGDALASXYRRQLY  283 (287)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            9999999999999999998887543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.05  E-value=8.7e-10  Score=114.53  Aligned_cols=167  Identities=9%  Similarity=-0.034  Sum_probs=111.8

Q ss_pred             HhcCChHHHHHHHHhcC--------C---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhc
Q 038522          380 AKSGEIADANRAFDEMG--------D---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSH  447 (590)
Q Consensus       380 ~~~~~~~~A~~~~~~~~--------~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~  447 (590)
                      ...|++++|.+.+++..        +   .+...+..+...+...|++++|+..|++..+.  .| +...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHHH
Confidence            45667777777776654        2   24456666677777777777777777777764  33 55666667777777


Q ss_pred             cCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHH
Q 038522          448 TGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGEL  524 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~  524 (590)
                      .|++++|.+.|++..+.   .| +...+..+..+|.+.|++++ ++.|+++ ...| +...|..+..++...|++++|++
T Consensus       480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~  555 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR  555 (681)
T ss_dssp             HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence            77777777777777754   34 35666677777777777777 7777776 3334 45566777777777777777777


Q ss_pred             HHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522          525 AARNLFDMEPEKSVNYVVLSNIYTAAGA  552 (590)
Q Consensus       525 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~  552 (590)
                      .++++++++|.+..++..++.+|...|+
T Consensus       556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          556 TLDEVPPTSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred             HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence            7777777777777777777777766544

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.03  E-value=1.8e-08  Score=87.96  Aligned_cols=162  Identities=6%  Similarity=-0.066  Sum_probs=129.8

Q ss_pred             CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC----ChHHHHHHHHHHHhhcCCCCChhH
Q 038522          398 KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTG----LTCEGWELFTDMINKYRILPRAEH  473 (590)
Q Consensus       398 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~  473 (590)
                      .++..+..+...|...+++++|+..|++..+.|   ++..+..+...|.. +    ++++|.+.|++..+.    .+...
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~----g~~~a   87 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA----GSKSG   87 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT----TCHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC----CCHHH
Confidence            456667777777777888888888888888764   45666667777777 6    889999999988754    35667


Q ss_pred             HHHHHHHHHh----cCChHHHHHHHHhc-CCCCC---HhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCCCCcchHH
Q 038522          474 FSCVVDLFAR----RGQLESAYNMIRQM-NIKPT---ASLWSAILGACSI----YGNTSLGELAARNLFDMEPEKSVNYV  541 (590)
Q Consensus       474 ~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~  541 (590)
                      +..|...|..    .+++++|+++|++. ...|+   +..+..|...|..    .+++++|+..++++.+. |.++.++.
T Consensus        88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~  166 (212)
T 3rjv_A           88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY  166 (212)
T ss_dssp             HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred             HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence            7778888877    78999999999998 44453   7788888888887    78999999999999988 55788999


Q ss_pred             HHHHHHHhc-C-----ChHHHHHHHHHhhhcCC
Q 038522          542 VLSNIYTAA-G-----AWDNARKTRKLMEERSL  568 (590)
Q Consensus       542 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~  568 (590)
                      .|+.+|... |     ++++|.+++++..+.|.
T Consensus       167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            999999865 3     89999999999888774

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.02  E-value=1.5e-09  Score=88.32  Aligned_cols=103  Identities=12%  Similarity=0.003  Sum_probs=88.4

Q ss_pred             CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522          466 RILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV  542 (590)
Q Consensus       466 ~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  542 (590)
                      .+.|+ ...+..+...+.+.|++++|+..|+++ ...| ++..|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus        30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~  109 (151)
T 3gyz_A           30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH  109 (151)
T ss_dssp             CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence            34453 556777888888999999999999888 4445 67788999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          543 LSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       543 l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ++.+|...|++++|++.|++..+...
T Consensus       110 lg~~~~~lg~~~eA~~~~~~al~l~~  135 (151)
T 3gyz_A          110 TGQCQLRLKAPLKAKECFELVIQHSN  135 (151)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999888654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.02  E-value=6.9e-10  Score=90.92  Aligned_cols=125  Identities=9%  Similarity=-0.052  Sum_probs=104.6

Q ss_pred             HHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcC
Q 038522          441 LLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYG  517 (590)
Q Consensus       441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~  517 (590)
                      |...+...|++++|+..++....   ..|+ ...+..+...|.+.|++++|++.|++. .+.| ++.+|..+...+...|
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   79 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE   79 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            34456678899999999988874   3454 456677899999999999999999998 5555 6788999999999999


Q ss_pred             CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH-HHHhhhcCC
Q 038522          518 NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKT-RKLMEERSL  568 (590)
Q Consensus       518 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~  568 (590)
                      ++++|+..++++++++|+++.++..++.+|...|++++|.+. +++..+..+
T Consensus        80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P  131 (150)
T 4ga2_A           80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP  131 (150)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST
T ss_pred             chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999999999999999887765 587777554

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.01  E-value=3e-09  Score=90.00  Aligned_cols=157  Identities=11%  Similarity=0.044  Sum_probs=100.0

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH-H
Q 038522          404 TSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL-F  481 (590)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~  481 (590)
                      ..+...+...|++++|...+++..+.  .| +...+..+...+...|++++|...++++.+.   .|+...+..+... +
T Consensus        10 ~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~   84 (176)
T 2r5s_A           10 LKQVSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL   84 (176)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence            33444555556666666666655543  23 3455555555666666666666666665533   2222222211111 1


Q ss_pred             HhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCChHHHH
Q 038522          482 ARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK--SVNYVVLSNIYTAAGAWDNAR  557 (590)
Q Consensus       482 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~  557 (590)
                      ...++..+|+..+++. ...| +...+..+...+...|++++|+..++++++.+|..  +..+..++.+|...|+.++|.
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            1222333466667666 3345 56778888888899999999999999999999854  558889999999999999999


Q ss_pred             HHHHHhhh
Q 038522          558 KTRKLMEE  565 (590)
Q Consensus       558 ~~~~~~~~  565 (590)
                      ..+++...
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.01  E-value=1e-08  Score=82.01  Aligned_cols=131  Identities=19%  Similarity=0.253  Sum_probs=102.3

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLF  481 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  481 (590)
                      .|..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.  .+.+...+..+...+
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~   79 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY   79 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence            45667777888888888888888887753 335667777788888888888888888888765  233466777888888


Q ss_pred             HhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          482 ARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       482 ~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                      ...|++++|.+.++++ .. +.+...+..+...+...|++++|...++++++.+|.
T Consensus        80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A           80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence            8889999999888887 32 335677788888888999999999999998888774

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.99  E-value=6e-09  Score=106.39  Aligned_cols=159  Identities=10%  Similarity=0.006  Sum_probs=118.9

Q ss_pred             cCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHH
Q 038522          382 SGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWEL  457 (590)
Q Consensus       382 ~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~  457 (590)
                      .|++++|...|++..+   .+...|..+...+...|++++|.+.+++..+.  .| +...+..+..++...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            4788899999988774   24567888888999999999999999998875  45 577888888899999999999999


Q ss_pred             HHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc---CCchHHHHHHHHHhcC
Q 038522          458 FTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIY---GNTSLGELAARNLFDM  532 (590)
Q Consensus       458 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~  532 (590)
                      +++..+.  .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+...   |++++|.+.++++++.
T Consensus        80 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999865  1334778888899999999999999999888 4344 567788888888888   9999999999999999


Q ss_pred             CCCCcchHHHHH
Q 038522          533 EPEKSVNYVVLS  544 (590)
Q Consensus       533 ~p~~~~~~~~l~  544 (590)
                      +|.+...+..++
T Consensus       158 ~p~~~~~~~~l~  169 (568)
T 2vsy_A          158 GVGAVEPFAFLS  169 (568)
T ss_dssp             TCCCSCHHHHTT
T ss_pred             CCcccChHHHhC
Confidence            998888877776

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.97  E-value=3.6e-09  Score=83.49  Aligned_cols=93  Identities=11%  Similarity=0.106  Sum_probs=46.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522          474 FSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG  551 (590)
Q Consensus       474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  551 (590)
                      +......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++.+|...|
T Consensus        16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~   95 (126)
T 4gco_A           16 EKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMR   95 (126)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCC
Confidence            344444455555555555555444 2222 34444455555555555555555555555555555555555555555555


Q ss_pred             ChHHHHHHHHHhhhc
Q 038522          552 AWDNARKTRKLMEER  566 (590)
Q Consensus       552 ~~~~A~~~~~~~~~~  566 (590)
                      ++++|++.+++..+.
T Consensus        96 ~~~~A~~~~~~al~l  110 (126)
T 4gco_A           96 EWSKAQRAYEDALQV  110 (126)
T ss_dssp             CHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHH
Confidence            555555555554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.95  E-value=1.4e-08  Score=88.45  Aligned_cols=133  Identities=8%  Similarity=-0.002  Sum_probs=96.0

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHh
Q 038522          406 LIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFAR  483 (590)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~  483 (590)
                      +..++.+.|++++|+..|++..+.  .| +...+..+..++...|++++|...|+++.+.   .| +...+..+...|..
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~  134 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYL  134 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHH
Confidence            778888899999999999998875  45 6778888888889999999999999998865   44 46778888887766


Q ss_pred             cCC--hHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHH
Q 038522          484 RGQ--LESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLS  544 (590)
Q Consensus       484 ~g~--~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~  544 (590)
                      .|+  .+.+...++.. ...|....+.....++...|++++|+..+++++++.|+ ......+.
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~-~~~~~~l~  197 (208)
T 3urz_A          135 TAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS-TEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC-HHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-HHHHHHHH
Confidence            654  34556666665 32233334445566667788999999999999999994 33333333

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.95  E-value=9.4e-09  Score=89.53  Aligned_cols=157  Identities=10%  Similarity=0.098  Sum_probs=117.4

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCc-HHHHHH----------------HHHHhhccCChHHHHHHHHHHHhhcCCCC
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVPN-DVTFLS----------------LLFACSHTGLTCEGWELFTDMINKYRILP  469 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~----------------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  469 (590)
                      ...+...|++++|+..|++..+.  .|+ ...+..                +..++...|++++|+..|++..+.   .|
T Consensus        11 g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p   85 (208)
T 3urz_A           11 VSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK---AP   85 (208)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---CC
Confidence            34455666667777776666653  442 334444                788899999999999999999975   45


Q ss_pred             -ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCC--chHHHHHHHHHhcCCCCCcchHHHHH
Q 038522          470 -RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGN--TSLGELAARNLFDMEPEKSVNYVVLS  544 (590)
Q Consensus       470 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~  544 (590)
                       +...+..+..+|...|++++|+..|++. ...| +..+|..+...+...|+  .+.+...++++....| ....+..++
T Consensus        86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~a~~~~g  164 (208)
T 3urz_A           86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTK-MQYARYRDG  164 (208)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCH-HHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCc-hhHHHHHHH
Confidence             5788999999999999999999999998 4455 56788888888766553  4556777777765444 334567788


Q ss_pred             HHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          545 NIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       545 ~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      .++...|++++|+..|++..+..+.
T Consensus       165 ~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          165 LSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHccCHHHHHHHHHHHHHhCCC
Confidence            8999999999999999998876653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.93  E-value=4.4e-09  Score=109.25  Aligned_cols=153  Identities=12%  Similarity=0.026  Sum_probs=134.5

Q ss_pred             HhcCCchHHHHHHHHHH--------HcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 038522          411 AKHGYGHEAIELYKKMK--------HEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLF  481 (590)
Q Consensus       411 ~~~~~~~~a~~~~~~m~--------~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  481 (590)
                      ...|++++|++.+++..        +.  .| +...+..+..++...|++++|.+.++++.+.  .+.+...+..+..+|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~  477 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAE  477 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHH
Confidence            77899999999999998        42  44 5677888888999999999999999999975  133577889999999


Q ss_pred             HhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 038522          482 ARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKT  559 (590)
Q Consensus       482 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~  559 (590)
                      ...|++++|++.|+++ ...| +...|..+..++...|++++ ++.|+++++++|+++.+|..++.+|...|++++|++.
T Consensus       478 ~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          478 LLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999998 5455 56778899999999999999 9999999999999999999999999999999999999


Q ss_pred             HHHhhhcCC
Q 038522          560 RKLMEERSL  568 (590)
Q Consensus       560 ~~~~~~~~~  568 (590)
                      ++++.+.+.
T Consensus       557 ~~~al~l~P  565 (681)
T 2pzi_A          557 LDEVPPTSR  565 (681)
T ss_dssp             HHTSCTTST
T ss_pred             HHhhcccCc
Confidence            998776543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.92  E-value=2.4e-08  Score=87.37  Aligned_cols=129  Identities=12%  Similarity=-0.027  Sum_probs=102.7

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLF  481 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  481 (590)
                      .+..+...+...|++++|+..|++..    .|+...+..+..++...|++++|...+++..+.  .+.+...+..+..+|
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~   81 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence            45566777888899999999888763    667888888888888999999999999988865  133567788888889


Q ss_pred             HhcCChHHHHHHHHhc-CCCC-C----------------HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC
Q 038522          482 ARRGQLESAYNMIRQM-NIKP-T----------------ASLWSAILGACSIYGNTSLGELAARNLFDMEPEK  536 (590)
Q Consensus       482 ~~~g~~~~A~~~~~~~-~~~p-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~  536 (590)
                      ...|++++|++.|+++ ...| +                ...+..+..++...|++++|...++++++..|.+
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            9999999999998887 2222 2                2567788888888899999999999999988865

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=5.7e-08  Score=90.41  Aligned_cols=218  Identities=10%  Similarity=0.016  Sum_probs=150.3

Q ss_pred             CCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-hhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHH
Q 038522          312 DNHSKEAFDLFKDMILKKMGIDDVILCLMLNICAN-VASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANR  390 (590)
Q Consensus       312 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  390 (590)
                      ++ +++|.+++++..+.. +..          +.. .++++.|...+.               .....|...|++++|..
T Consensus         5 ~~-~~eA~~~~~~a~k~~-~~~----------~~~~~~~~~~A~~~~~---------------~a~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            5 QK-ISEAHEHIAKAEKYL-KTS----------FMKWKPDYDSAASEYA---------------KAAVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HH-HHHHHHHHHHHHHHH-CCC----------SSSCSCCHHHHHHHHH---------------HHHHHHHHTTCHHHHHH
T ss_pred             ch-HHHHHHHHHHHHHHc-ccc----------ccCCCCCHHHHHHHHH---------------HHHHHHHHcCCHHHHHH
Confidence            44 677777777765431 110          111 345555555544               34556778888888888


Q ss_pred             HHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHcC---CCCc--HHHHHHHHHHhhccCChHHHHH
Q 038522          391 AFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEG---MVPN--DVTFLSLLFACSHTGLTCEGWE  456 (590)
Q Consensus       391 ~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~~~~~~a~~  456 (590)
                      .|.+..+     .+    ..+|+.+...|...|++++|+..|++..+.-   -.|.  ..++..+...|.. |++++|+.
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            8877652     12    2477888889999999999999999876531   1222  3567788888888 99999999


Q ss_pred             HHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCC---CC----HhHHHHHHHHHHhcCCchHHHH
Q 038522          457 LFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NIK---PT----ASLWSAILGACSIYGNTSLGEL  524 (590)
Q Consensus       457 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~---p~----~~~~~~l~~~~~~~~~~~~a~~  524 (590)
                      .|++..+...-..+    ..++..+...|.+.|++++|++.|++. .+.   ++    ...+..+...+...|+++.|..
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            99998764211111    457888899999999999999999987 211   11    1255666667778899999999


Q ss_pred             HHHHHhcCCCCCcch-----HHHHHHHHHhcCChHHHHHH
Q 038522          525 AARNLFDMEPEKSVN-----YVVLSNIYTAAGAWDNARKT  559 (590)
Q Consensus       525 ~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~  559 (590)
                      .+++++ +.|.....     ...++.++ ..|+.+.+.++
T Consensus       217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            999999 99965433     34455555 67887776663

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.90  E-value=4.3e-09  Score=85.85  Aligned_cols=97  Identities=11%  Similarity=0.031  Sum_probs=65.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      ...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            445555666666777777777777666 3233 55566666677777777777777777777777777777777777777


Q ss_pred             hcCChHHHHHHHHHhhhcC
Q 038522          549 AAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       549 ~~g~~~~A~~~~~~~~~~~  567 (590)
                      ..|++++|++.+++..+..
T Consensus       101 ~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHC
Confidence            7777777777777666543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.90  E-value=1.3e-07  Score=87.35  Aligned_cols=160  Identities=7%  Similarity=-0.079  Sum_probs=121.5

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHcC-CCCcHH----HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHH
Q 038522          406 LIAGYAKHGYGHEAIELYKKMKHEG-MVPNDV----TFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSC  476 (590)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~  476 (590)
                      .+..+...|++++|..++++..+.. ..|+..    .+..+...+...+++++|+..+++..+...-.++    ..+++.
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            4667788899999999999988642 122321    2334666677788999999999999874222223    236888


Q ss_pred             HHHHHHhcCChHHHHHHHHhc-----CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC------cchHH
Q 038522          477 VVDLFARRGQLESAYNMIRQM-----NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEK------SVNYV  541 (590)
Q Consensus       477 l~~~~~~~g~~~~A~~~~~~~-----~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~  541 (590)
                      +...|...|++++|+..++++     ..+.+    ..++..+...|...|++++|+..+++++++.+..      +.+|.
T Consensus       161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~  240 (293)
T 3u3w_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence            999999999999999999887     12112    2367888899999999999999999999765422      56799


Q ss_pred             HHHHHHHhcCC-hHHHHHHHHHhhh
Q 038522          542 VLSNIYTAAGA-WDNARKTRKLMEE  565 (590)
Q Consensus       542 ~l~~~~~~~g~-~~~A~~~~~~~~~  565 (590)
                      .++.+|...|+ +++|.+.+++..+
T Consensus       241 ~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            99999999995 6999999998865

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.89  E-value=1.4e-08  Score=80.00  Aligned_cols=115  Identities=8%  Similarity=-0.002  Sum_probs=97.2

Q ss_pred             CCCc-HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHH
Q 038522          431 MVPN-DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWS  507 (590)
Q Consensus       431 ~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  507 (590)
                      +.|+ ...+......+.+.|++++|++.|++..+.  .+.+...|..+..+|.+.|++++|++.+++. .+.| +...|.
T Consensus         8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~   85 (126)
T 4gco_A            8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYI   85 (126)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHH
Confidence            4564 356777788899999999999999999865  2335788888999999999999999999988 4444 567899


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                      .+..++...|++++|++.++++++++|+++.++..|..++
T Consensus        86 ~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~l  125 (126)
T 4gco_A           86 RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL  125 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHhc
Confidence            9999999999999999999999999999999988887653

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.89  E-value=3.1e-08  Score=91.04  Aligned_cols=136  Identities=8%  Similarity=-0.062  Sum_probs=115.7

Q ss_pred             CCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHH
Q 038522          432 VPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAI  509 (590)
Q Consensus       432 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l  509 (590)
                      +.+...+..+...+...|++++|...|++..+.   .| +...+..+...+.+.|++++|...++++ ...|+.......
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence            445667777888899999999999999999975   45 5778889999999999999999999998 556765544333


Q ss_pred             H-HHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522          510 L-GACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK  570 (590)
Q Consensus       510 ~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  570 (590)
                      . ..+...++.+.|+..++++++.+|+++..+..++.+|...|++++|...++++.+..+..
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~  252 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTA  252 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTG
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc
Confidence            3 346678899999999999999999999999999999999999999999999999876543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.88  E-value=5.2e-08  Score=90.06  Aligned_cols=164  Identities=6%  Similarity=-0.099  Sum_probs=118.2

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCc-H----HHHHHHHHHhhccCChHHHHHHHHHHHhhcCC--CCC--hh
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPN-D----VTFLSLLFACSHTGLTCEGWELFTDMINKYRI--LPR--AE  472 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~--~~  472 (590)
                      .+...+..+...|++++|.+.+++..+...... .    ..+..+...+...|++++|...+++..+....  .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344456677788888888888888776432211 1    22334555667788999999999888753111  111  34


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc----CCCCC-----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC------Cc
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM----NIKPT-----ASLWSAILGACSIYGNTSLGELAARNLFDMEPE------KS  537 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~  537 (590)
                      +++.+...|...|++++|+..++++    ...|+     ..++..+...|...|++++|+..+++++++.+.      -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7788888999999999999998876    11222     257788888999999999999999999865431      15


Q ss_pred             chHHHHHHHHHhcCChHHH-HHHHHHhhh
Q 038522          538 VNYVVLSNIYTAAGAWDNA-RKTRKLMEE  565 (590)
Q Consensus       538 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  565 (590)
                      .+|..++.+|...|++++| ...+++...
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            6788999999999999999 777877654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.85  E-value=1.1e-06  Score=80.42  Aligned_cols=192  Identities=15%  Similarity=0.176  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHhcC--ChHHHHHHHHhcCC---CCcchHHHHHHHH----Hhc---CCchHHHHHHHHHHHcCCCCcHHHH
Q 038522          371 VGNALIDMYAKSG--EIADANRAFDEMGD---KNVISWTSLIAGY----AKH---GYGHEAIELYKKMKHEGMVPNDVTF  438 (590)
Q Consensus       371 ~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~m~~~g~~p~~~~~  438 (590)
                      +++.-..++...|  ++++++.+++.+..   .+..+|+.-...+    ...   +++++++.+++++.+.. +-|...|
T Consensus        69 aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW  147 (306)
T 3dra_A           69 IWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVW  147 (306)
T ss_dssp             HHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence            3444444455555  77777777777653   2334555433333    344   67888888888888752 3367777


Q ss_pred             HHHHHHhhccCChH--HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC------hHHHHHHHHhc-CCCC-CHhHHHH
Q 038522          439 LSLLFACSHTGLTC--EGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ------LESAYNMIRQM-NIKP-TASLWSA  508 (590)
Q Consensus       439 ~~ll~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~-~~~p-~~~~~~~  508 (590)
                      ..-...+.+.|.++  ++++.++++.+.  -.-|...|+.-...+.+.|+      ++++++.++++ ...| |...|+.
T Consensus       148 ~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y  225 (306)
T 3dra_A          148 SYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNY  225 (306)
T ss_dssp             HHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHH
Confidence            77776777777777  888888888865  12356666666666666666      78888888877 3334 6677877


Q ss_pred             HHHHHHhcCCc-hHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          509 ILGACSIYGNT-SLGELAARNLFDME---PEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       509 l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +...+.+.|+. +.+..+.+++.+++   |.++.++..++.+|.+.|+.++|+++++.+.+
T Consensus       226 ~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          226 LLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            77777777764 44666778777766   77888888899999888999999999988865

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.83  E-value=1.1e-07  Score=83.96  Aligned_cols=184  Identities=13%  Similarity=-0.031  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCc--chhHHHHHHHHHHhcCChHHHHHHHHhcCC--CCcc----hHHH
Q 038522          334 DVILCLMLNICANVASLNLGRQIHAFAFKYQSSY--DAAVGNALIDMYAKSGEIADANRAFDEMGD--KNVI----SWTS  405 (590)
Q Consensus       334 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~----~~~~  405 (590)
                      ...+......+...|+++.|...++.+.+..+..  ....+..+..+|.+.|++++|+..|+++.+  |+..    .+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            3445566777889999999999999999875532  246778889999999999999999999873  4322    4445


Q ss_pred             HHHHHHh------------------cCCchHHHHHHHHHHHcCCCCcHH-HHHHHHHHhhccCChHHHHHHHHHHHhhcC
Q 038522          406 LIAGYAK------------------HGYGHEAIELYKKMKHEGMVPNDV-TFLSLLFACSHTGLTCEGWELFTDMINKYR  466 (590)
Q Consensus       406 l~~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  466 (590)
                      +..++..                  .|++++|+..|+++.+.  .|+.. .......          ...+...+.    
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~----  147 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA----  147 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH----
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH----
Confidence            5555543                  57899999999999975  56432 2221110          001111111    


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc
Q 038522          467 ILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV  538 (590)
Q Consensus       467 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  538 (590)
                           .....+...|.+.|++++|+..|+++ ...|+    ...+..+..++.+.|++++|++.++.+....|++..
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~  219 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE  219 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence                 11234667888999999999999988 33443    246778889999999999999999999998886554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.82  E-value=8.7e-06  Score=80.57  Aligned_cols=120  Identities=14%  Similarity=-0.003  Sum_probs=57.6

Q ss_pred             HHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-CChHHHHHHHHhcCC--C-CcchHHHHHHHHHh
Q 038522          337 LCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS-GEIADANRAFDEMGD--K-NVISWTSLIAGYAK  412 (590)
Q Consensus       337 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~  412 (590)
                      |...+....+.++.+.|..++..+ +.. ..+..+|...+..-... ++.+.|..+|+...+  | ++..|...+.-...
T Consensus       289 w~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~  366 (493)
T 2uy1_A          289 RINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLR  366 (493)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence            333444444455556666666555 211 12223333222222222 246666666665432  1 22234444444455


Q ss_pred             cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 038522          413 HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMIN  463 (590)
Q Consensus       413 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  463 (590)
                      .|+.+.|..+|+++.     .....|...+.--...|+.+.+.+++++..+
T Consensus       367 ~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          367 IGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            566666666666642     1344455555544555666666666666654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.82  E-value=4.9e-08  Score=99.61  Aligned_cols=146  Identities=13%  Similarity=-0.044  Sum_probs=74.3

Q ss_pred             hhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHH
Q 038522          348 ASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYK  424 (590)
Q Consensus       348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~  424 (590)
                      |++++|...++.+.+..+. +...+..+...|.+.|++++|...|++..+   .+...|..+...+...|++++|.+.++
T Consensus         3 g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             ------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4556666666655554322 345555666666666666666666665543   233455556666666666666666666


Q ss_pred             HHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhc---CChHHHHHHHHhc
Q 038522          425 KMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARR---GQLESAYNMIRQM  497 (590)
Q Consensus       425 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~  497 (590)
                      +..+.. +.+...+..+..++...|++++|.+.+++..+.  .+.+...+..+...+...   |++++|.+.+++.
T Consensus        82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            666541 224555566666666666666666666666643  122345555666666666   6666666666655

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.82  E-value=2.1e-08  Score=84.86  Aligned_cols=118  Identities=8%  Similarity=0.106  Sum_probs=53.7

Q ss_pred             cCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHH-HHhcCCc--hHH
Q 038522          448 TGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGA-CSIYGNT--SLG  522 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~-~~~~~~~--~~a  522 (590)
                      .|++++|...+++..+.  .+.+...+..+...|...|++++|...|+++ ...| +...+..+... +...|++  ++|
T Consensus        23 ~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           23 QQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             ----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             ccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            34444444444444432  1123344444444455555555555555444 1112 33344444444 4444554  555


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          523 ELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      +..++++++.+|.++.++..++.+|...|++++|...++++.+..
T Consensus       101 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          101 RAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            555555555555555555555555555555555555555554433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.82  E-value=5.6e-08  Score=81.03  Aligned_cols=128  Identities=6%  Similarity=-0.034  Sum_probs=103.7

Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCC-CCHhHHHHHHHHH
Q 038522          436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIK-PTASLWSAILGAC  513 (590)
Q Consensus       436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~-p~~~~~~~l~~~~  513 (590)
                      ..+..+...+...|++++|...+++..+.  .+.+...+..+...+...|++++|.+.+++. ... .+...+..+...+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            44666677778888888888888888764  2335777888888888999999999998887 333 3567888888999


Q ss_pred             HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChHHHHHHHHHhhh
Q 038522          514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI--YTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~  565 (590)
                      ...|++++|...++++++..|.++..+..+..+  +...|++++|++.++...+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            999999999999999999999888888555544  8889999999999987754

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.80  E-value=6.2e-06  Score=81.62  Aligned_cols=122  Identities=10%  Similarity=-0.043  Sum_probs=66.0

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhc--CCCCCHhHHHHHHHHH
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG-QLESAYNMIRQM--NIKPTASLWSAILGAC  513 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~--~~~p~~~~~~~l~~~~  513 (590)
                      .|...+..+.+.++.+.|..+|++. +. . ..+...|...+..-...+ +.+.|..+|+..  ..+.++..|...+.-.
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            3444555555556677777777766 22 1 123333332222222223 567777777665  2222233444455555


Q ss_pred             HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ...|+.+.|..+++++.    .....|..++..-...|+.+.+.+++++..+
T Consensus       365 ~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          365 LRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            56677777777777762    2445566666655666777777776666654

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.78  E-value=1.6e-07  Score=79.19  Aligned_cols=154  Identities=11%  Similarity=0.027  Sum_probs=116.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH-hhc
Q 038522          372 GNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA-CSH  447 (590)
Q Consensus       372 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~  447 (590)
                      .......+.+.|++++|...|++..+   .+...+..+...+...|++++|+..+++..+.  .|++..+..+... +..
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~   86 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQ   86 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHh
Confidence            34566778888999999999998874   35567888888999999999999999988764  3444333222211 122


Q ss_pred             cCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC---HhHHHHHHHHHHhcCCchHH
Q 038522          448 TGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT---ASLWSAILGACSIYGNTSLG  522 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~~~~~~~a  522 (590)
                      .+....|...+++..+.   .| +...+..+...+...|++++|...|+++ ...|+   ...+..+...+...|+.++|
T Consensus        87 ~~~~~~a~~~~~~al~~---~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           87 QAAESPELKRLEQELAA---NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHTSCHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             hcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            23334578888888864   45 4788888999999999999999999988 55664   45788888999999999999


Q ss_pred             HHHHHHHh
Q 038522          523 ELAARNLF  530 (590)
Q Consensus       523 ~~~~~~~~  530 (590)
                      ...|++++
T Consensus       164 ~~~y~~al  171 (176)
T 2r5s_A          164 ASKYRRQL  171 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.78  E-value=5.9e-08  Score=90.29  Aligned_cols=197  Identities=11%  Similarity=0.009  Sum_probs=149.9

Q ss_pred             chhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHH
Q 038522          346 NVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKK  425 (590)
Q Consensus       346 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  425 (590)
                      ..|++++|..+++...+.... +         .+...++++.|...|...           ...|...|++++|...|.+
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~   61 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ   61 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence            467888999988887764332 1         011157888888887763           5678889999999999998


Q ss_pred             HHHcCC---CC--cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCC--CC--hhHHHHHHHHHHhcCChHHHHHHHHh
Q 038522          426 MKHEGM---VP--NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRIL--PR--AEHFSCVVDLFARRGQLESAYNMIRQ  496 (590)
Q Consensus       426 m~~~g~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~--~~~~~~l~~~~~~~g~~~~A~~~~~~  496 (590)
                      ..+...   .+  -..+|..+...|...|++++|+..+++..+-+.-.  +.  ..++..+...|.. |++++|++.|++
T Consensus        62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~  140 (307)
T 2ifu_A           62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ  140 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence            765311   11  14578888889999999999999999887542111  11  4567788888988 999999999988


Q ss_pred             c-CCCC-------CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc------chHHHHHHHHHhcCChHHHHHHHHH
Q 038522          497 M-NIKP-------TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS------VNYVVLSNIYTAAGAWDNARKTRKL  562 (590)
Q Consensus       497 ~-~~~p-------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~  562 (590)
                      . .+.|       ...++..+...+...|++++|+..+++++++.|.+.      ..+..++.++...|++++|++.+++
T Consensus       141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~  220 (307)
T 2ifu_A          141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE  220 (307)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            7 2111       135678888999999999999999999998766433      3677788889999999999999999


Q ss_pred             hh
Q 038522          563 ME  564 (590)
Q Consensus       563 ~~  564 (590)
                      ..
T Consensus       221 al  222 (307)
T 2ifu_A          221 SY  222 (307)
T ss_dssp             HT
T ss_pred             Hh
Confidence            87

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.78  E-value=3.8e-07  Score=79.65  Aligned_cols=131  Identities=11%  Similarity=0.013  Sum_probs=111.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCCh
Q 038522          372 GNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLT  451 (590)
Q Consensus       372 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  451 (590)
                      +..+...+...|++++|...|++...++...|..+...+...|++++|+..+++..+.. +.+...+..+..++...|++
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~   87 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY   87 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence            45567778899999999999999998888899999999999999999999999998863 34678888999999999999


Q ss_pred             HHHHHHHHHHHhhcCC-------------CC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH
Q 038522          452 CEGWELFTDMINKYRI-------------LP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA  503 (590)
Q Consensus       452 ~~a~~~~~~~~~~~~~-------------~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~  503 (590)
                      ++|.+.|++..+...-             .| ....+..+..+|...|++++|.+.|+++ ...|+.
T Consensus        88 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~  154 (213)
T 1hh8_A           88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  154 (213)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence            9999999999874211             11 1367888999999999999999999998 666754

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.77  E-value=8.5e-08  Score=76.41  Aligned_cols=117  Identities=9%  Similarity=0.033  Sum_probs=81.3

Q ss_pred             cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHH
Q 038522          434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILG  511 (590)
Q Consensus       434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  511 (590)
                      +...+..+...+...|++++|...+++..+.  .+.+...+..+...+...|++++|++.++++ ...| +...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKR--NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence            4555666666667777777777777776642  1224566666677777777777777777766 2223 4566777777


Q ss_pred             HHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522          512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGA  552 (590)
Q Consensus       512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  552 (590)
                      .+...|++++|+..++++++..|.+...+..++.++...|+
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            77888888888888888888888777788888887776664

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.77  E-value=9.8e-08  Score=74.98  Aligned_cols=115  Identities=15%  Similarity=0.178  Sum_probs=87.9

Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHH
Q 038522          435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGA  512 (590)
Q Consensus       435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~  512 (590)
                      ...+..+...+...|++++|.+.++++.+.  .+.+...+..+...+.+.|++++|...++++ .. +.+..++..+...
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence            456666777777888888888888887764  1234667777788888888888888888777 22 3456677888888


Q ss_pred             HHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC
Q 038522          513 CSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAG  551 (590)
Q Consensus       513 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g  551 (590)
                      +...|++++|...++++++..|.++..+..++.++...|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            888889999999999988888888888888888776654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.77  E-value=8.7e-08  Score=76.03  Aligned_cols=119  Identities=9%  Similarity=-0.004  Sum_probs=96.0

Q ss_pred             cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHH
Q 038522          434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILG  511 (590)
Q Consensus       434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  511 (590)
                      +...+..+...+...|++++|...+++..+.  .+.+...+..+...+...|++++|.+.+++. ...| +...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHH
Confidence            4556667777788888888888888888765  2335677778888888889999998888887 3333 5677888888


Q ss_pred             HHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 038522          512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWD  554 (590)
Q Consensus       512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  554 (590)
                      .+...|++++|...++++++..|.++..+..++.++...|+++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~  131 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP  131 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence            8999999999999999999999988999999999998888753

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.76  E-value=4.9e-08  Score=79.02  Aligned_cols=96  Identities=9%  Similarity=-0.031  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      ..+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++++|+++..+..++.+|..
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            34444555666666666666666665 2233 455566666666677777777777777777777777777777777777


Q ss_pred             cCChHHHHHHHHHhhhcC
Q 038522          550 AGAWDNARKTRKLMEERS  567 (590)
Q Consensus       550 ~g~~~~A~~~~~~~~~~~  567 (590)
                      .|++++|.+.++...+..
T Consensus        99 ~g~~~~A~~~~~~al~~~  116 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALA  116 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC
Confidence            777777777777665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.75  E-value=6.3e-08  Score=74.43  Aligned_cols=101  Identities=7%  Similarity=0.007  Sum_probs=85.8

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC--CcchHHHHHH
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPE--KSVNYVVLSN  545 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~  545 (590)
                      +...+..+...+...|++++|...+++. .. +.+...+..+...+...|++++|+..++++++..|.  ++..+..++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            3556677788888899999999999887 33 345677888888999999999999999999999998  8999999999


Q ss_pred             HHHhc-CChHHHHHHHHHhhhcCCcc
Q 038522          546 IYTAA-GAWDNARKTRKLMEERSLRK  570 (590)
Q Consensus       546 ~~~~~-g~~~~A~~~~~~~~~~~~~~  570 (590)
                      +|... |++++|.+.++...+.....
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            99999 99999999999988866543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.75  E-value=7.2e-08  Score=90.76  Aligned_cols=127  Identities=8%  Similarity=-0.041  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----------------hhHHHHHHHHHHhcCChHHHHHHHHhc-
Q 038522          435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----------------AEHFSCVVDLFARRGQLESAYNMIRQM-  497 (590)
Q Consensus       435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-  497 (590)
                      ...+..+...+.+.|++++|...|++..+.   .|+                ...+..+..+|.+.|++++|+..++++ 
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al  223 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSW---LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKAL  223 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            445556666666677777777777776654   232                467888999999999999999999988 


Q ss_pred             CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH-HHHHHHhh
Q 038522          498 NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNA-RKTRKLME  564 (590)
Q Consensus       498 ~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~  564 (590)
                      .+.| +...+..+..++...|++++|+..++++++++|.++.++..++.++...|++++| ...++.|.
T Consensus       224 ~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          224 ELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444 6778899999999999999999999999999999999999999999999999999 44566553

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.74  E-value=3.7e-08  Score=77.01  Aligned_cols=96  Identities=10%  Similarity=-0.010  Sum_probs=83.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA  550 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  550 (590)
                      .+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|+++.++..++.+|...
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            4556677888999999999999988 4444 6778889999999999999999999999999999999999999999999


Q ss_pred             CChHHHHHHHHHhhhcCC
Q 038522          551 GAWDNARKTRKLMEERSL  568 (590)
Q Consensus       551 g~~~~A~~~~~~~~~~~~  568 (590)
                      |++++|+..+++..+..+
T Consensus        99 g~~~~A~~~~~~al~~~P  116 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQP  116 (121)
T ss_dssp             HHHHHHHHHHHHHHC---
T ss_pred             CCHHHHHHHHHHHHHhCc
Confidence            999999999999877554

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.74  E-value=6.3e-07  Score=78.06  Aligned_cols=160  Identities=11%  Similarity=-0.069  Sum_probs=117.9

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcCC-CCcchHHHHHHHHHhcC----CchHHHHHHHHHHHcCCCCcHHHHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMGD-KNVISWTSLIAGYAKHG----YGHEAIELYKKMKHEGMVPNDVTFLSLL  442 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~l~~~~~~~~----~~~~a~~~~~~m~~~g~~p~~~~~~~ll  442 (590)
                      ++..+..+...|...+++++|...|++..+ .++..+..|...|.. +    ++++|+.+|++..+.|   ++..+..+.
T Consensus        17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg   92 (212)
T 3rjv_A           17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEIVLA   92 (212)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            455566677777777788888888777654 355666667777766 5    7888888888887754   556666677


Q ss_pred             HHhhc----cCChHHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHh----cCChHHHHHHHHhc-CCCCCHhHHHHHH
Q 038522          443 FACSH----TGLTCEGWELFTDMINKYRILPR---AEHFSCVVDLFAR----RGQLESAYNMIRQM-NIKPTASLWSAIL  510 (590)
Q Consensus       443 ~~~~~----~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~~~~-~~~p~~~~~~~l~  510 (590)
                      ..|..    .+++++|.+.|++..+.   .|+   ...+..|...|..    .+++++|+.+|++. ...+++..+..+.
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg  169 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARD---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAG  169 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSS---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHc---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence            77766    77889999999888854   342   6777888888888    78899999999888 4345666777777


Q ss_pred             HHHHhc-C-----CchHHHHHHHHHhcCCC
Q 038522          511 GACSIY-G-----NTSLGELAARNLFDMEP  534 (590)
Q Consensus       511 ~~~~~~-~-----~~~~a~~~~~~~~~~~p  534 (590)
                      ..|... |     ++++|+..++++.+..+
T Consensus       170 ~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          170 MMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            777543 2     88999999998887765

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.73  E-value=5.9e-08  Score=76.63  Aligned_cols=96  Identities=13%  Similarity=0.082  Sum_probs=68.4

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      ..+..+...+.+.|++++|+..|++. ...| +...|..+..++...|++++|+..++++++++|.++.++..++.+|..
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   84 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA   84 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            34555666677777777777777766 3333 456677777777777777777777777777777777777777777777


Q ss_pred             cCChHHHHHHHHHhhhcC
Q 038522          550 AGAWDNARKTRKLMEERS  567 (590)
Q Consensus       550 ~g~~~~A~~~~~~~~~~~  567 (590)
                      .|++++|.+.+++..+..
T Consensus        85 ~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           85 VKEYASALETLDAARTKD  102 (126)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHHHHHHhC
Confidence            777777777777776644

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.72  E-value=4.2e-08  Score=89.81  Aligned_cols=191  Identities=9%  Similarity=-0.045  Sum_probs=133.0

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHHHhcC--CC-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHH
Q 038522          368 DAAVGNALIDMYAKSGEIADANRAFDEMG--DK-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLF  443 (590)
Q Consensus       368 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~  443 (590)
                      +...+..+...+.+.|++++|...|++..  .| +...|..+..++.+.|++++|...+++..+.  .| +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            34556667778888888888888888775  23 5667888888899999999999999988875  45 5777888888


Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCCh-hHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHH
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPRA-EHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLG  522 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a  522 (590)
                      ++...|++++|...|++..+.   .|+. ..+...+....+..+...... ......+++......+.. + ..|++++|
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A  154 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERE  154 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHH
Confidence            899999999999999888754   2221 111112222221111111111 122233344444444432 2 36899999


Q ss_pred             HHHHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHhhhc
Q 038522          523 ELAARNLFDMEPEKSVNYVVLSNIYTAA-GAWDNARKTRKLMEER  566 (590)
Q Consensus       523 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~  566 (590)
                      ++.++++++.+|.+......+...+... +.+++|.++|.++.+.
T Consensus       155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9999999999998888888888877776 8899999999988763

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.71  E-value=2e-07  Score=75.74  Aligned_cols=104  Identities=6%  Similarity=-0.065  Sum_probs=89.1

Q ss_pred             CCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHH
Q 038522          431 MVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLW  506 (590)
Q Consensus       431 ~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~  506 (590)
                      +.| +...+..+...+.+.|++++|...|+++.+.   .| +...|..+..+|...|++++|++.|+++ .+.| ++..|
T Consensus        31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~  107 (151)
T 3gyz_A           31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV  107 (151)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred             CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence            455 3556777888899999999999999999965   45 5788999999999999999999999998 4445 56788


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522          507 SAILGACSIYGNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      ..+..++...|++++|+..|++++++.|+++
T Consensus       108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999999999999553

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.70  E-value=1.4e-05  Score=73.08  Aligned_cols=229  Identities=11%  Similarity=0.015  Sum_probs=156.9

Q ss_pred             cCCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhchh--hhHhHHHHHHHHHHhCCCcchhHHHHHHHHH----Hhc-
Q 038522          311 DDNHSKEAFDLFKDMILKKMGIDDV-ILCLMLNICANVA--SLNLGRQIHAFAFKYQSSYDAAVGNALIDMY----AKS-  382 (590)
Q Consensus       311 ~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-  382 (590)
                      .+...++|+.++..++..  .|+.. .++.--..+...+  +++++...++.+....++ +..+++.-...+    ... 
T Consensus        45 ~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~  121 (306)
T 3dra_A           45 AEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN  121 (306)
T ss_dssp             TTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred             cCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence            333245666666666544  33332 2333333444444  666666666666665543 333333333333    344 


Q ss_pred             --CChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCch--HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCC-----
Q 038522          383 --GEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGH--EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGL-----  450 (590)
Q Consensus       383 --~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-----  450 (590)
                        +++++++.+++.+.+   .|..+|+.-.-.+.+.|.++  ++++.++++.+.. .-|...|+.-...+...+.     
T Consensus       122 ~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~  200 (306)
T 3dra_A          122 NDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDN  200 (306)
T ss_dssp             TCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred             ccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhh
Confidence              788899999988874   45567777777777788888  9999999999863 3366777766666666666     


Q ss_pred             -hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH-HHHHHHhc-CC----CCCHhHHHHHHHHHHhcCCchHHH
Q 038522          451 -TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES-AYNMIRQM-NI----KPTASLWSAILGACSIYGNTSLGE  523 (590)
Q Consensus       451 -~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~-~~----~p~~~~~~~l~~~~~~~~~~~~a~  523 (590)
                       ++++++.++.+...  .+-|...|+.+...+.+.|+..+ +.++..++ ..    ..+...+..++..+.+.|+.++|+
T Consensus       201 ~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~  278 (306)
T 3dra_A          201 TIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESR  278 (306)
T ss_dssp             HHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHH
Confidence             88999999999875  23467888888888888888555 55677766 22    346778899999999999999999


Q ss_pred             HHHHHHhc-CCCCCcchHHHHHH
Q 038522          524 LAARNLFD-MEPEKSVNYVVLSN  545 (590)
Q Consensus       524 ~~~~~~~~-~~p~~~~~~~~l~~  545 (590)
                      +.++.+.+ .+|-+...|...+.
T Consensus       279 ~~~~~l~~~~Dpir~~yW~~~~~  301 (306)
T 3dra_A          279 TVYDLLKSKYNPIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHHHhccChHHHHHHHHHHh
Confidence            99999996 89988777776554

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.69  E-value=3.9e-07  Score=81.22  Aligned_cols=184  Identities=8%  Similarity=-0.041  Sum_probs=119.8

Q ss_pred             hcCChHHHHHHHHhcCC--C-CcchHHHH-------HHHHHhcCCchHHHHHHHHHHHcCCCCc----------------
Q 038522          381 KSGEIADANRAFDEMGD--K-NVISWTSL-------IAGYAKHGYGHEAIELYKKMKHEGMVPN----------------  434 (590)
Q Consensus       381 ~~~~~~~A~~~~~~~~~--~-~~~~~~~l-------~~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------  434 (590)
                      ..++...|.+.|.++..  | ....|..+       ...+.+.++..+++..+++-.+  +.|+                
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence            45777777777777663  2 23456555       3455555555555555554443  2221                


Q ss_pred             ------HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCH----h
Q 038522          435 ------DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTA----S  504 (590)
Q Consensus       435 ------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~----~  504 (590)
                            ......+...+...|++++|.+.|+.+...   .|+......+...+.+.|++++|+..|+.....|++    .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~  172 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA  172 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence                  122234455677788888888888777643   454335555666778888888888888877433332    3


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCC--CC-CcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDME--PE-KSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      .+..+..++...|++++|+..|+++....  |. .+.....++.++.+.|+.++|..+|+++....+.
T Consensus       173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            56667778888888888888888887433  53 4456778888888888888888888888776553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.66  E-value=1e-07  Score=79.32  Aligned_cols=111  Identities=14%  Similarity=0.015  Sum_probs=92.4

Q ss_pred             cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHH
Q 038522          434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILG  511 (590)
Q Consensus       434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~  511 (590)
                      +...+..+...+...|++++|+..|++..+.  .+.+...+..+..+|.+.|++++|+..|++. .+.| +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            5667888888899999999999999999875  1235778888999999999999999999988 4444 5678888999


Q ss_pred             HHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522          512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI  546 (590)
Q Consensus       512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  546 (590)
                      ++...|++++|+..++++++++|+++..+...+..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  122 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLE  122 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            99999999999999999999999888876655543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.65  E-value=2.2e-07  Score=74.53  Aligned_cols=98  Identities=8%  Similarity=0.009  Sum_probs=68.0

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                      +...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|+..++++++.+|.++.++..++.+|
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   87 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   87 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHH
Confidence            4556666666677777777777777665 2233 4556667777777777777777777777777777777777777777


Q ss_pred             HhcCChHHHHHHHHHhhhcC
Q 038522          548 TAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       548 ~~~g~~~~A~~~~~~~~~~~  567 (590)
                      ...|++++|.+.++++.+..
T Consensus        88 ~~~~~~~~A~~~~~~a~~~~  107 (137)
T 3q49_B           88 LEMESYDEAIANLQRAYSLA  107 (137)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHHC
Confidence            77777777777777766643

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.64  E-value=9e-08  Score=75.55  Aligned_cols=96  Identities=6%  Similarity=-0.063  Sum_probs=71.6

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc-------hHHH
Q 038522          472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV-------NYVV  542 (590)
Q Consensus       472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~  542 (590)
                      ..+..+...+.+.|++++|++.|+++ .+.| +...|..+..+|...|++++|+..++++++++|+++.       +|..
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            34556777788888888888888777 4444 4566777888888888888888888888887775543       5667


Q ss_pred             HHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          543 LSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       543 l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      ++.+|...|++++|++.+++..+..
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~~  113 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSEF  113 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            7778888888888888888876643

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.64  E-value=2.5e-07  Score=71.76  Aligned_cols=108  Identities=13%  Similarity=0.068  Sum_probs=51.5

Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHH
Q 038522          436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGAC  513 (590)
Q Consensus       436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  513 (590)
                      ..+..+...+...|++++|...+++....  .+.+...+..+...+...|++++|...+++. ...| +...+..+...+
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            33444444555555555555555555543  1123444444455555555555555555544 2222 334444444555


Q ss_pred             HhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522          514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSN  545 (590)
Q Consensus       514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  545 (590)
                      ...|++++|...++++++..|.++..+..++.
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~  114 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN  114 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            55555555555555555555544444444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.63  E-value=1e-07  Score=77.57  Aligned_cols=117  Identities=9%  Similarity=-0.029  Sum_probs=92.5

Q ss_pred             HHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC
Q 038522          422 LYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI  499 (590)
Q Consensus       422 ~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~  499 (590)
                      .++++.+  +.| +...+..+...+...|++++|...|+.....  -+.+...+..+..+|...|++++|++.|+++ ..
T Consensus         9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l   84 (148)
T 2vgx_A            9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM   84 (148)
T ss_dssp             SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            3445544  345 4556677778888999999999999998865  2335778888899999999999999999988 44


Q ss_pred             CC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHH
Q 038522          500 KP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVV  542 (590)
Q Consensus       500 ~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~  542 (590)
                      .| ++..+..+..++...|++++|+..+++++++.|+++.....
T Consensus        85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  128 (148)
T 2vgx_A           85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXEL  128 (148)
T ss_dssp             STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHH
Confidence            44 56778888999999999999999999999999977766443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.63  E-value=2.6e-07  Score=73.54  Aligned_cols=99  Identities=13%  Similarity=0.073  Sum_probs=89.9

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                      +...+..+...+.+.|++++|.+.+++. ...| +...+..+...+...|++++|+..++++++..|.++.++..++.+|
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~   94 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            4667888899999999999999999998 5455 6778899999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhhcCC
Q 038522          548 TAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       548 ~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ...|++++|.+.+++..+...
T Consensus        95 ~~~~~~~~A~~~~~~~~~~~p  115 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALDLDS  115 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCG
T ss_pred             HHHhhHHHHHHHHHHHHHhCC
Confidence            999999999999999887654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.61  E-value=3.6e-06  Score=77.57  Aligned_cols=159  Identities=11%  Similarity=-0.058  Sum_probs=119.7

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCCCC---c------chHHHHHHHHHhcCCchHHHHHHHHHHHcCCC-Cc----HHHHH
Q 038522          374 ALIDMYAKSGEIADANRAFDEMGDKN---V------ISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV-PN----DVTFL  439 (590)
Q Consensus       374 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~  439 (590)
                      ..+..+...|++++|...+++..+..   .      ..+..+...+...+++++|+..+++..+.... ++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            34677888999999999999876421   1      12334666677778999999999999874222 22    33688


Q ss_pred             HHHHHhhccCChHHHHHHHHHHHhhc----CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-------CCCCC-HhHH
Q 038522          440 SLLFACSHTGLTCEGWELFTDMINKY----RILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-------NIKPT-ASLW  506 (590)
Q Consensus       440 ~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~  506 (590)
                      .+...|...|++++|...++++.+..    +..+. ..++..+...|.+.|++++|++.+++.       +..+. ..++
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            88999999999999999999988532    11111 347788899999999999999999877       22222 5678


Q ss_pred             HHHHHHHHhcCC-chHHHHHHHHHhcC
Q 038522          507 SAILGACSIYGN-TSLGELAARNLFDM  532 (590)
Q Consensus       507 ~~l~~~~~~~~~-~~~a~~~~~~~~~~  532 (590)
                      ..+..++...|+ +++|...+++++.+
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            888999999995 59999999998843

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.60  E-value=4.3e-07  Score=73.82  Aligned_cols=93  Identities=13%  Similarity=0.031  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                      .+..+...+...|++++|.+.|++. ...|+    ...+..+...+...|++++|+..++++++..|.++..+..++.+|
T Consensus        30 ~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~  109 (148)
T 2dba_A           30 QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQAL  109 (148)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHHH
Confidence            3344444444444444444444444 33333    233444444444455555555555555555554444455555555


Q ss_pred             HhcCChHHHHHHHHHhhh
Q 038522          548 TAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       548 ~~~g~~~~A~~~~~~~~~  565 (590)
                      ...|++++|.+.+++..+
T Consensus       110 ~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          110 EKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            555555555555554444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.59  E-value=9.9e-07  Score=76.21  Aligned_cols=153  Identities=7%  Similarity=-0.032  Sum_probs=87.8

Q ss_pred             hcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhc---CCCC-ChhHHHHHHHHHHhcCCh
Q 038522          412 KHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKY---RILP-RAEHFSCVVDLFARRGQL  487 (590)
Q Consensus       412 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~-~~~~~~~l~~~~~~~g~~  487 (590)
                      ..|++++|.+.++.+... .......+..+...+...|++++|...+++..+..   +..| ....+..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            345566666644333321 11234555556666666666666666666655421   1111 134455666666777777


Q ss_pred             HHHHHHHHhc-C---CCC-C----HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC--CC----cchHHHHHHHHHhcCC
Q 038522          488 ESAYNMIRQM-N---IKP-T----ASLWSAILGACSIYGNTSLGELAARNLFDMEP--EK----SVNYVVLSNIYTAAGA  552 (590)
Q Consensus       488 ~~A~~~~~~~-~---~~p-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g~  552 (590)
                      ++|.+.+++. .   ..+ +    ...+..+...+...|++++|...++++++..+  .+    ..++..++.+|...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            7777766665 1   011 2    23456666777777888888887777774322  11    2235677888888888


Q ss_pred             hHHHHHHHHHhhh
Q 038522          553 WDNARKTRKLMEE  565 (590)
Q Consensus       553 ~~~A~~~~~~~~~  565 (590)
                      +++|.+.+++..+
T Consensus       163 ~~~A~~~~~~al~  175 (203)
T 3gw4_A          163 LLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            8888888877765

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.59  E-value=8.5e-07  Score=68.63  Aligned_cols=98  Identities=12%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      ...+..+...+...|++++|...+++. ...| +...+..+...+...|++++|...++++++..|.++..+..++.+|.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            455667778888889999999888887 3333 66777888888888899999999999998888888888888899999


Q ss_pred             hcCChHHHHHHHHHhhhcCC
Q 038522          549 AAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       549 ~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ..|++++|.+.+++..+..+
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~  103 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEA  103 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCT
T ss_pred             HHhhHHHHHHHHHHHHHcCC
Confidence            99999999998888877543

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.59  E-value=4.2e-07  Score=71.25  Aligned_cols=98  Identities=16%  Similarity=0.255  Sum_probs=88.2

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      ...+..+...+...|++++|.+.++++ .. +.+...+..+...+...|++++|+..++++++..|.++..+..++.+|.
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~   88 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY   88 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence            567788889999999999999999998 33 3467788899999999999999999999999999999999999999999


Q ss_pred             hcCChHHHHHHHHHhhhcCC
Q 038522          549 AAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       549 ~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ..|++++|.+.++++.+..+
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~  108 (125)
T 1na0_A           89 KQGDYDEAIEYYQKALELDP  108 (125)
T ss_dssp             HTTCHHHHHHHHHHHHHHCT
T ss_pred             HhcCHHHHHHHHHHHHHhCC
Confidence            99999999999999987654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.59  E-value=3e-06  Score=78.09  Aligned_cols=162  Identities=10%  Similarity=-0.052  Sum_probs=119.7

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCC--CC-c------chHHHHHHHHHhcCCchHHHHHHHHHHHcCC---CCc--HH
Q 038522          371 VGNALIDMYAKSGEIADANRAFDEMGD--KN-V------ISWTSLIAGYAKHGYGHEAIELYKKMKHEGM---VPN--DV  436 (590)
Q Consensus       371 ~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~-~------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~  436 (590)
                      .+...+..+...|++++|.+.+++..+  +. .      ..+..+...+...|++++|+..+++..+...   .+.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            344566778889999999998876542  11 1      1234456667788899999999999875321   122  45


Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-------CH
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-------TA  503 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-------~~  503 (590)
                      +++.+...|...|++++|...+++..+.....|+     ..++..+...|...|++++|++.+++. .+.+       -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7888889999999999999999998732111222     257888999999999999999999887 1111       15


Q ss_pred             hHHHHHHHHHHhcCCchHH-HHHHHHHhcC
Q 038522          504 SLWSAILGACSIYGNTSLG-ELAARNLFDM  532 (590)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~  532 (590)
                      .++..+...|...|++++| ...+++++.+
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~  266 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            6788888999999999999 7778888743

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.56  E-value=4.7e-07  Score=78.01  Aligned_cols=96  Identities=7%  Similarity=-0.052  Sum_probs=74.2

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      ..+..+..+|.+.|++++|+..+++. ...| +...+..+..++...|++++|+..++++++++|.++.++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            56777888889999999999999887 3334 667888899999999999999999999999999999999999999999


Q ss_pred             cCChHHHH-HHHHHhhhcC
Q 038522          550 AGAWDNAR-KTRKLMEERS  567 (590)
Q Consensus       550 ~g~~~~A~-~~~~~~~~~~  567 (590)
                      .|+.+++. ..+..+...+
T Consensus       169 ~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             HHHHHC-------------
T ss_pred             HHHHHHHHHHHHHHHhccc
Confidence            99888887 5555554433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.55  E-value=6.7e-07  Score=75.41  Aligned_cols=127  Identities=8%  Similarity=0.041  Sum_probs=100.6

Q ss_pred             HhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHH-HHhcCCh--
Q 038522          411 AKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDL-FARRGQL--  487 (590)
Q Consensus       411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--  487 (590)
                      ...|++++|...+++..+.. +.+...+..+...+...|++++|...|++..+..  +.+...+..+..+ +...|++  
T Consensus        21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR--GENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhcCCcch
Confidence            34678889999999888752 3467888888899999999999999999998652  3356777788888 7789998  


Q ss_pred             HHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522          488 ESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY  540 (590)
Q Consensus       488 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  540 (590)
                      ++|...++++ ...| +...+..+...+...|++++|...++++++..|.++...
T Consensus        98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~  152 (177)
T 2e2e_A           98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT  152 (177)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence            9999999988 4444 567788888999999999999999999999999776544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.55  E-value=3.1e-07  Score=72.68  Aligned_cols=89  Identities=15%  Similarity=0.120  Sum_probs=43.2

Q ss_pred             HHHHHhcCChHHHHHHHHhc-CCCCCH----hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHh
Q 038522          478 VDLFARRGQLESAYNMIRQM-NIKPTA----SLWSAILGACSIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTA  549 (590)
Q Consensus       478 ~~~~~~~g~~~~A~~~~~~~-~~~p~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~  549 (590)
                      ...+...|++++|.+.|+++ ...|+.    ..+..+..++...|++++|+..++++++..|++   +.++..++.+|..
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~   88 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYG   88 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHH
Confidence            33444445555555555444 112221    244444445555555555555555555555544   4445555555555


Q ss_pred             cCChHHHHHHHHHhhhc
Q 038522          550 AGAWDNARKTRKLMEER  566 (590)
Q Consensus       550 ~g~~~~A~~~~~~~~~~  566 (590)
                      .|++++|.+.++++.+.
T Consensus        89 ~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           89 EGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             TTCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHH
Confidence            55555555555555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.53  E-value=1.4e-06  Score=70.66  Aligned_cols=112  Identities=12%  Similarity=-0.010  Sum_probs=83.4

Q ss_pred             cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHH
Q 038522          434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWS  507 (590)
Q Consensus       434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~  507 (590)
                      +...+..+...+...|++++|.+.|++..+   ..|+    ...+..+...|...|++++|++.+++. ...| +...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence            455666666677777777777777777763   3455    466677777788888888888888776 3334 566777


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      .+..++...|++++|...++++++.+|.++..+..+..+..
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~  144 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISG  144 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHh
Confidence            88888888999999999999999999988777777766543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.52  E-value=6.4e-07  Score=70.86  Aligned_cols=99  Identities=15%  Similarity=0.077  Sum_probs=88.5

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                      +...+..+...+...|++++|.+.+++. .. +.+...+..+...+...|++++|+..++++++..|.++..+..++.+|
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence            3566778888999999999999999998 33 346778888999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHHHHHhhhcCC
Q 038522          548 TAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       548 ~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ...|++++|.+.+++..+...
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p  111 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDP  111 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST
T ss_pred             HHhCCHHHHHHHHHHHHhcCc
Confidence            999999999999999888653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.52  E-value=3.3e-07  Score=73.48  Aligned_cols=62  Identities=10%  Similarity=-0.037  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcC-------CCCCcchH----HHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDM-------EPEKSVNY----VVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      .|..+..++...|++++|+..+++++++       +|+++.+|    +..+.++...|++++|++.|++..+.
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel  131 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  131 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            7777888888888888888888888888       99888888    99999999999999999999988764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.51  E-value=6.5e-07  Score=72.26  Aligned_cols=112  Identities=10%  Similarity=-0.047  Sum_probs=86.8

Q ss_pred             CC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHH
Q 038522          432 VP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSA  508 (590)
Q Consensus       432 ~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~  508 (590)
                      .| +...+..+...+...|++++|...|+++...  .+.+...+..+..+|.+.|++++|+..|++. ...| ++..+..
T Consensus        14 ~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~   91 (142)
T 2xcb_A           14 SEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFH   91 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            44 3445566677788889999999999888865  1335777888888899999999999999887 3344 5667788


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522          509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN  545 (590)
Q Consensus       509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  545 (590)
                      +..++...|++++|+..+++++++.|.++........
T Consensus        92 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  128 (142)
T 2xcb_A           92 AAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR  128 (142)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence            8888999999999999999999999977766554433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.51  E-value=8.6e-07  Score=69.79  Aligned_cols=112  Identities=8%  Similarity=-0.108  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHH
Q 038522          435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGA  512 (590)
Q Consensus       435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~  512 (590)
                      ...+..+...+...|++++|...|++..+.  .+.+...+..+..+|.+.|++++|+..+++. ...| +...|..+..+
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            345666667777888888888888888764  1234677778888888888888888888887 3344 46678888888


Q ss_pred             HHhcCCchHHHHHHHHHhcCC------CCCcchHHHHHHHHH
Q 038522          513 CSIYGNTSLGELAARNLFDME------PEKSVNYVVLSNIYT  548 (590)
Q Consensus       513 ~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~  548 (590)
                      +...|++++|+..++++++++      |.++.++..+..+..
T Consensus        82 ~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~  123 (126)
T 3upv_A           82 QIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ  123 (126)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred             HHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence            888899999999999999888      777777776665543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.50  E-value=1.2e-06  Score=72.71  Aligned_cols=94  Identities=16%  Similarity=0.117  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      ..+..+...+.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..++.+|..
T Consensus        12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   91 (164)
T 3sz7_A           12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD   91 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34444445555555555555555554 2222 344445555555555555555555555555555555555555555555


Q ss_pred             cCChHHHHHHHHHhhh
Q 038522          550 AGAWDNARKTRKLMEE  565 (590)
Q Consensus       550 ~g~~~~A~~~~~~~~~  565 (590)
                      .|++++|++.+++..+
T Consensus        92 ~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           92 MADYKGAKEAYEKGIE  107 (164)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHH
Confidence            5555555555555544

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.48  E-value=4.1e-07  Score=81.03  Aligned_cols=135  Identities=11%  Similarity=-0.085  Sum_probs=96.1

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC--hhHHHHHHHHH
Q 038522          404 TSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR--AEHFSCVVDLF  481 (590)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~  481 (590)
                      -.+...+...|++++|.+.|+.+...  .|+......+...+.+.+++++|+..|+...+. . .|.  ...+..+..++
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHH
Confidence            34556677788888888888877764  465445555556777888899998888755431 1 111  23567778888


Q ss_pred             HhcCChHHHHHHHHhc--CCC-CC--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522          482 ARRGQLESAYNMIRQM--NIK-PT--ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVL  543 (590)
Q Consensus       482 ~~~g~~~~A~~~~~~~--~~~-p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  543 (590)
                      .+.|++++|++.|++.  +-. |.  ...+.....++.+.|+.++|...|+++...+|+ +.+...|
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL  247 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL  247 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence            8999999999999888  211 43  345666777788899999999999999999996 5555544

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.47  E-value=8.2e-07  Score=76.72  Aligned_cols=153  Identities=14%  Similarity=-0.002  Sum_probs=90.5

Q ss_pred             hcCChHHHHH---HHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH----cCCCC-cHHHHHHHHHHhhccCChH
Q 038522          381 KSGEIADANR---AFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKH----EGMVP-NDVTFLSLLFACSHTGLTC  452 (590)
Q Consensus       381 ~~~~~~~A~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~~~~~  452 (590)
                      ..|++++|.+   .+..-.......+..+...+...|++++|...+++..+    .+..| ....+..+...+...|+++
T Consensus         4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            3466666666   44332222334566666666777777777777766554    11122 2345666666777777887


Q ss_pred             HHHHHHHHHHhhcCCCC-C----hhHHHHHHHHHHhcCChHHHHHHHHhc----CCCCC----HhHHHHHHHHHHhcCCc
Q 038522          453 EGWELFTDMINKYRILP-R----AEHFSCVVDLFARRGQLESAYNMIRQM----NIKPT----ASLWSAILGACSIYGNT  519 (590)
Q Consensus       453 ~a~~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~~~~~l~~~~~~~~~~  519 (590)
                      +|...+++..+.....+ +    ...+..+...+...|++++|...+++.    ...++    ..++..+...+...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            77777777654321112 1    334666677777778888887777765    11112    12346666777788888


Q ss_pred             hHHHHHHHHHhcCC
Q 038522          520 SLGELAARNLFDME  533 (590)
Q Consensus       520 ~~a~~~~~~~~~~~  533 (590)
                      ++|...+++++++.
T Consensus       164 ~~A~~~~~~al~~~  177 (203)
T 3gw4_A          164 LEAQQHWLRARDIF  177 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888777543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.47  E-value=1.1e-07  Score=73.91  Aligned_cols=83  Identities=11%  Similarity=0.039  Sum_probs=44.8

Q ss_pred             cCChHHHHHHHHhc-CC---CC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 038522          484 RGQLESAYNMIRQM-NI---KP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARK  558 (590)
Q Consensus       484 ~g~~~~A~~~~~~~-~~---~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~  558 (590)
                      .|++++|+..|++. ..   .| +...+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            34555555555554 32   12 234455555555666666666666666666666666666666666666666666666


Q ss_pred             HHHHhhhc
Q 038522          559 TRKLMEER  566 (590)
Q Consensus       559 ~~~~~~~~  566 (590)
                      .+++..+.
T Consensus        83 ~~~~al~~   90 (117)
T 3k9i_A           83 LLLKIIAE   90 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66655543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.46  E-value=1.9e-06  Score=84.73  Aligned_cols=129  Identities=6%  Similarity=-0.022  Sum_probs=93.9

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-------------ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILP-------------RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-  501 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-  501 (590)
                      .+..+...+.+.|++++|...|++..+.....+             ....|..+..+|.+.|++++|+..++++ .+.| 
T Consensus       270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  349 (457)
T 1kt0_A          270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA  349 (457)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence            444455555555666666666655554311111             1467888889999999999999999988 4344 


Q ss_pred             CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH-HHHHhhh
Q 038522          502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARK-TRKLMEE  565 (590)
Q Consensus       502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~  565 (590)
                      +...|..+..+|...|++++|+..|+++++++|++..++..++.++...|++++|.+ .+..|..
T Consensus       350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            677889999999999999999999999999999999999999999999999998874 4555543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.44  E-value=6.3e-07  Score=74.29  Aligned_cols=62  Identities=16%  Similarity=0.137  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      .|..+..+|...|+++.|+..++++++++|.++.+|..++.+|...|++++|++.+++..+.
T Consensus        65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           65 LYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            34444444555555555555555555555555555555555555555555555555554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.44  E-value=8.5e-07  Score=83.45  Aligned_cols=150  Identities=9%  Similarity=-0.051  Sum_probs=79.4

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHH
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLF  481 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~  481 (590)
                      .+..+...+.+.|++++|+..|++..+.  .|+...       +...++.+++...+   .        ...+..+..+|
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~~  240 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHHH
Confidence            4555666677777788888887777663  454332       22333333333221   1        13677888899


Q ss_pred             HhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH-HHhcCChHHHHH
Q 038522          482 ARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI-YTAAGAWDNARK  558 (590)
Q Consensus       482 ~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~-~~~~g~~~~A~~  558 (590)
                      .+.|++++|+..+++. ...| +...|..+..+|...|++++|+..++++++++|.++.++..|..+ ....+..+++.+
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~  320 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKE  320 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988 4444 677889999999999999999999999999999999999999888 445678888889


Q ss_pred             HHHHhhhcCCccC
Q 038522          559 TRKLMEERSLRKN  571 (590)
Q Consensus       559 ~~~~~~~~~~~~~  571 (590)
                      .+..|.+......
T Consensus       321 ~~~~~l~~~p~~~  333 (338)
T 2if4_A          321 MYKGIFKGKDEGG  333 (338)
T ss_dssp             -------------
T ss_pred             HHHHhhCCCCCCC
Confidence            9998877655443

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.43  E-value=1.6e-06  Score=71.95  Aligned_cols=97  Identities=11%  Similarity=0.053  Sum_probs=87.0

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          472 EHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      ..+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|+..++++++..|.++.++..++.+|..
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~   93 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA   93 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45667788899999999999999998 33 34677888999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHhhhcCC
Q 038522          550 AGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       550 ~g~~~~A~~~~~~~~~~~~  568 (590)
                      .|++++|.+.++++.+...
T Consensus        94 ~~~~~~A~~~~~~a~~~~p  112 (166)
T 1a17_A           94 LGKFRAALRDYETVVKVKP  112 (166)
T ss_dssp             TTCHHHHHHHHHHHHHHST
T ss_pred             hccHHHHHHHHHHHHHhCC
Confidence            9999999999999988654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.42  E-value=7.4e-07  Score=70.51  Aligned_cols=110  Identities=4%  Similarity=-0.095  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC----CCC----HhHH
Q 038522          436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI----KPT----ASLW  506 (590)
Q Consensus       436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----~p~----~~~~  506 (590)
                      ..+..+...+...|++++|...+++..+.  .+.+...+..+...+...|++++|...++++ ..    .++    ..++
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            45556666667777777777777777654  1234556666666777777777777777665 11    112    4556


Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          507 SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       507 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      ..+...+...|++++|...++++++..| ++.....+..+..
T Consensus        83 ~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~  123 (131)
T 1elr_A           83 ARIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEK  123 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHH
Confidence            6666666677777777777777776666 5555555554443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.42  E-value=5.1e-05  Score=70.05  Aligned_cols=190  Identities=14%  Similarity=0.097  Sum_probs=114.1

Q ss_pred             HHHHHHHHHhcC-ChHHHHHHHHhcCCC---CcchHHHHHHHHHhc-C-CchHHHHHHHHHHHcCCCC-cHHHHHHHHHH
Q 038522          372 GNALIDMYAKSG-EIADANRAFDEMGDK---NVISWTSLIAGYAKH-G-YGHEAIELYKKMKHEGMVP-NDVTFLSLLFA  444 (590)
Q Consensus       372 ~~~l~~~~~~~~-~~~~A~~~~~~~~~~---~~~~~~~l~~~~~~~-~-~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~  444 (590)
                      ++.--..+...| .+++++.+++.+...   +..+|+.-...+.+. + ++++++++++++.+.  .| |...|..-...
T Consensus        91 Wn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~--dpkNy~AW~~R~wv  168 (349)
T 3q7a_A           91 WQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLP--DPKNYHTWAYLHWL  168 (349)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSS--CTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            333333444445 466777777666532   334555544444444 5 677777777777764  33 55666555555


Q ss_pred             hhccCChH--------HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC-------hHHHHHHHHhc-CCCC-CHhHHH
Q 038522          445 CSHTGLTC--------EGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ-------LESAYNMIRQM-NIKP-TASLWS  507 (590)
Q Consensus       445 ~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-------~~~A~~~~~~~-~~~p-~~~~~~  507 (590)
                      +.+.|.++        ++++.++++.+.  .+-|...|+.....+.+.++       ++++++.++++ ...| |...|+
T Consensus       169 l~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~  246 (349)
T 3q7a_A          169 YSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWN  246 (349)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence            55555555        777777777765  12356666666666666665       57777777776 3334 556666


Q ss_pred             HHHHHHHhcCCc--------------------hHHHHHHHHHhcCC------CCCcchHHHHHHHHHhcCChHHHHHHHH
Q 038522          508 AILGACSIYGNT--------------------SLGELAARNLFDME------PEKSVNYVVLSNIYTAAGAWDNARKTRK  561 (590)
Q Consensus       508 ~l~~~~~~~~~~--------------------~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~~~~  561 (590)
                      -+...+.+.|+.                    .........+....      +..+.++..|+.+|...|+.++|.++++
T Consensus       247 Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~  326 (349)
T 3q7a_A          247 YLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFE  326 (349)
T ss_dssp             HHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            665555555543                    23333444443332      4567778899999999999999999999


Q ss_pred             Hhhh
Q 038522          562 LMEE  565 (590)
Q Consensus       562 ~~~~  565 (590)
                      .+.+
T Consensus       327 ~l~~  330 (349)
T 3q7a_A          327 KLSS  330 (349)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            9864

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.40  E-value=1.8e-06  Score=69.03  Aligned_cols=113  Identities=9%  Similarity=-0.094  Sum_probs=82.0

Q ss_pred             CcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHH
Q 038522          433 PNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAIL  510 (590)
Q Consensus       433 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  510 (590)
                      .+...+..+...+...|++++|...|+...+.  .+.+...+..+..++...|++++|...+++. ...| +...+..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence            35667777777788888888888888887764  1234667777888888888888888888877 3334 566778888


Q ss_pred             HHHHhcCCchHHHHHHHHHhcCCCC-----CcchHHHHHHHH
Q 038522          511 GACSIYGNTSLGELAARNLFDMEPE-----KSVNYVVLSNIY  547 (590)
Q Consensus       511 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~  547 (590)
                      ..+...|++++|+..+++++++.|+     +......+..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~  126 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK  126 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888888775     344444444433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.38  E-value=2.4e-07  Score=79.81  Aligned_cols=121  Identities=7%  Similarity=-0.021  Sum_probs=87.4

Q ss_pred             hccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CH----------------hHHH
Q 038522          446 SHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TA----------------SLWS  507 (590)
Q Consensus       446 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~----------------~~~~  507 (590)
                      ...|+++.+.+.|+.....  .......+..+...+.+.|++++|++.|++. ...| ++                ..+.
T Consensus        15 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDEE--KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL   92 (198)
T ss_dssp             -------CCCSGGGCCHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCchhhCCHHH--HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence            3344555555544432221  0112345566677777888888888888776 2222 22                6788


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      .+..++...|++++|+..++++++.+|.++.++..++.+|...|++++|.+.+++..+...
T Consensus        93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p  153 (198)
T 2fbn_A           93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP  153 (198)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence            8889999999999999999999999999999999999999999999999999999887653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.38  E-value=2.5e-06  Score=77.92  Aligned_cols=107  Identities=9%  Similarity=-0.042  Sum_probs=68.6

Q ss_pred             cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHH
Q 038522          434 NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAIL  510 (590)
Q Consensus       434 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~  510 (590)
                      +...+..+...+...|++++|...|++..+.   .| +...+..+..+|.+.|++++|+..++++ ...| +...+..+.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg   79 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG   79 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3455566666667777777777777777654   33 4566666667777777777777777666 4444 345566666


Q ss_pred             HHHHhcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522          511 GACSIYGNTSLGELAARNLFDMEPEKSVNYVVL  543 (590)
Q Consensus       511 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  543 (590)
                      .++...|++++|+..++++++++|+++..+...
T Consensus        80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~  112 (281)
T 2c2l_A           80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDD  112 (281)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHH
Confidence            667777777777777777777666554443333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.37  E-value=4.5e-06  Score=65.86  Aligned_cols=103  Identities=13%  Similarity=0.129  Sum_probs=72.3

Q ss_pred             HHHHhhccCChHHHHHHHHHHHhhcCCCCC-h---hHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----HhHHHHHHH
Q 038522          441 LLFACSHTGLTCEGWELFTDMINKYRILPR-A---EHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----ASLWSAILG  511 (590)
Q Consensus       441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----~~~~~~l~~  511 (590)
                      +...+...|++++|...|+.+.+.   .|+ .   ..+..+..++.+.|++++|...|++. ...|+    +..+..+..
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            445566777777777777777764   232 2   36666777777888888888888776 33333    456777778


Q ss_pred             HHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522          512 ACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI  546 (590)
Q Consensus       512 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  546 (590)
                      ++...|++++|...++++++..|+++........+
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            88888888888888888888888776665554443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.37  E-value=8.8e-07  Score=87.57  Aligned_cols=118  Identities=8%  Similarity=-0.003  Sum_probs=97.4

Q ss_pred             HHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCC
Q 038522          442 LFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGN  518 (590)
Q Consensus       442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~  518 (590)
                      ...+.+.|++++|.+.+++..+.   .| +...+..+..+|.+.|++++|++.++++ ...| +...+..+..+|...|+
T Consensus        13 g~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           13 ANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            34566788999999999998865   44 4778888999999999999999999988 4445 56788899999999999


Q ss_pred             chHHHHHHHHHhcCCCCCcchHHHHHHH--HHhcCChHHHHHHHHH
Q 038522          519 TSLGELAARNLFDMEPEKSVNYVVLSNI--YTAAGAWDNARKTRKL  562 (590)
Q Consensus       519 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~~  562 (590)
                      +++|++.+++++++.|+++.++..++.+  +.+.|++++|++.+++
T Consensus        90 ~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~  135 (477)
T 1wao_1           90 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH  135 (477)
T ss_dssp             HHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999999999888  8899999999999883

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.36  E-value=5.1e-06  Score=81.49  Aligned_cols=189  Identities=9%  Similarity=-0.049  Sum_probs=130.4

Q ss_pred             HHHHhcCChHHHHHHHHhcCC--CC---c---------------chHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCcH
Q 038522          377 DMYAKSGEIADANRAFDEMGD--KN---V---------------ISWTSLIAGYAKHGYGHEAIELYKKMKHEG-MVPND  435 (590)
Q Consensus       377 ~~~~~~~~~~~A~~~~~~~~~--~~---~---------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~  435 (590)
                      ..+.+.|++++|.+.|..+.+  ++   .               .++..+...|...|++++|.+.+.++...- ..++.
T Consensus        12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~   91 (434)
T 4b4t_Q           12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS   91 (434)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence            345566777777777766542  10   0               136678888888999999998888766421 11222


Q ss_pred             ----HHHHHHHHHhhccCChHHHHHHHHHHHhhc---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-----CC--C
Q 038522          436 ----VTFLSLLFACSHTGLTCEGWELFTDMINKY---RILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-----NI--K  500 (590)
Q Consensus       436 ----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~~--~  500 (590)
                          ...+.+-..+...|+++.|.++++......   +..+. ..++..+...|...|++++|..++++.     +.  +
T Consensus        92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~  171 (434)
T 4b4t_Q           92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK  171 (434)
T ss_dssp             HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence                123333344556788999999888776431   22222 457778899999999999999998876     21  2


Q ss_pred             C-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC---CC----cchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          501 P-TASLWSAILGACSIYGNTSLGELAARNLFDMEP---EK----SVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       501 p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p---~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      | ...++..++..|...|++++|...++++....|   .+    ...+..++..+...|++++|.+.+.+..+
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            2 235678888999999999999999999885432   11    23466778888899999999988877755

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.35  E-value=2.2e-06  Score=67.50  Aligned_cols=94  Identities=10%  Similarity=-0.025  Sum_probs=48.9

Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC--------HhHHH
Q 038522          438 FLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT--------ASLWS  507 (590)
Q Consensus       438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~--------~~~~~  507 (590)
                      +..+...+.+.|++++|++.|++..+.   .| +...|..+..+|.+.|++++|++.+++. .+.|+        ..+|.
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            334444455555555555555555432   22 2444555555555555555555555544 11111        12445


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          508 AILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      .+..++...|++++|++.++++++..|
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~  114 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFR  114 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence            555666666777777777777766666

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.33  E-value=4.7e-06  Score=63.62  Aligned_cols=101  Identities=14%  Similarity=0.081  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC---CHhHHHHHH
Q 038522          435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP---TASLWSAIL  510 (590)
Q Consensus       435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p---~~~~~~~l~  510 (590)
                      ...+..+...+...|++++|...+++..+.  .+.+...+..+...+...|++++|.+.+++. ...|   +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHH
Confidence            334555566667777777777777777654  1234566677777777888888888888776 3333   466777888


Q ss_pred             HHHHhc-CCchHHHHHHHHHhcCCCCCc
Q 038522          511 GACSIY-GNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       511 ~~~~~~-~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      ..+... |++++|++.++++++..|.++
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence            888888 888888888888888888554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.32  E-value=2.2e-06  Score=70.73  Aligned_cols=129  Identities=13%  Similarity=0.034  Sum_probs=87.3

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc----CCCCC----Hh
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEHFSCVVDLFARRGQLESAYNMIRQM----NIKPT----AS  504 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~----~~~p~----~~  504 (590)
                      ++..+...+...|++++|...+++..+...-.++    ...+..+...+...|++++|.+.+++.    ...++    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4555555666666777777666665543111111    135666777777788888887777765    11111    34


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCC------CCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEP------EKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .+..+...+...|++++|...++++++..+      .....+..++.+|...|++++|.+.+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            566777788888999999998888885432      2245688899999999999999999998766

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.32  E-value=1.8e-06  Score=68.24  Aligned_cols=92  Identities=8%  Similarity=0.048  Sum_probs=44.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC-------cchHHHHH
Q 038522          474 FSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEK-------SVNYVVLS  544 (590)
Q Consensus       474 ~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~  544 (590)
                      +..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++++..|.+       +.++..++
T Consensus         7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~la   86 (131)
T 1elr_A            7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHHH
Confidence            344444455555555555555544 11 2233444444445555555555555555555444433       44455555


Q ss_pred             HHHHhcCChHHHHHHHHHhhh
Q 038522          545 NIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       545 ~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .+|...|++++|.+.++++.+
T Consensus        87 ~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           87 NSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHH
Confidence            555555555555555555444

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.31  E-value=0.00039  Score=64.20  Aligned_cols=231  Identities=7%  Similarity=-0.021  Sum_probs=154.9

Q ss_pred             hcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhchh-hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhc-C-Ch
Q 038522          310 RDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICANVA-SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKS-G-EI  385 (590)
Q Consensus       310 ~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~  385 (590)
                      +.+...++|+.++.+++..  .|+. ..++.--..+...+ .++++..+++.+....++ +..+++.-..++.+. + ++
T Consensus        65 ~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~  141 (349)
T 3q7a_A           65 AKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDP  141 (349)
T ss_dssp             HTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCC
T ss_pred             HhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCCh
Confidence            3344366778877777765  4443 33444444444555 477788888777776655 566666666666665 6 88


Q ss_pred             HHHHHHHHhcCCCCc---chHHHHHHHHHhcCCch--------HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCC----
Q 038522          386 ADANRAFDEMGDKNV---ISWTSLIAGYAKHGYGH--------EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGL----  450 (590)
Q Consensus       386 ~~A~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~----  450 (590)
                      ++++.+++.+.+.++   .+|+--.-.+.+.+.++        ++++.++++.+.. .-|...|+.....+.+.+.    
T Consensus       142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~  220 (349)
T 3q7a_A          142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETS  220 (349)
T ss_dssp             HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccc
Confidence            999999999886444   45555444555555555        8999999999863 3367777777777777765    


Q ss_pred             ---hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh--------------------HHHHHHHHhc-CC-------
Q 038522          451 ---TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQL--------------------ESAYNMIRQM-NI-------  499 (590)
Q Consensus       451 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~-~~-------  499 (590)
                         ++++++.+++....  .+-|...|+.+-..+.+.|+.                    .+..+...++ +.       
T Consensus       221 ~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (349)
T 3q7a_A          221 SRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP  298 (349)
T ss_dssp             HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred             hHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence               68889999888865  233577787777777777654                    3344444444 22       


Q ss_pred             CCCHhHHHHHHHHHHhcCCchHHHHHHHHHh-cCCCCCcchHHHHHHH
Q 038522          500 KPTASLWSAILGACSIYGNTSLGELAARNLF-DMEPEKSVNYVVLSNI  546 (590)
Q Consensus       500 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~-~~~p~~~~~~~~l~~~  546 (590)
                      .++...+..++..|...|+.++|.++++.+. +.+|-....|...+..
T Consensus       299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~~  346 (349)
T 3q7a_A          299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRRE  346 (349)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHHh
Confidence            3567788899999999999999999999997 7899766666655543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.31  E-value=2e-06  Score=80.91  Aligned_cols=119  Identities=7%  Similarity=-0.036  Sum_probs=99.8

Q ss_pred             ccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----------------HhHHHH
Q 038522          447 HTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----------------ASLWSA  508 (590)
Q Consensus       447 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~  508 (590)
                      ..+++++|...++...+.   .| +...+..+...|.+.|++++|+..|+++ ...|+                ...|..
T Consensus       125 ~L~~~~~A~~~~~~a~~~---~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n  201 (336)
T 1p5q_A          125 HLKSFEKAKESWEMNSEE---KLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN  201 (336)
T ss_dssp             EEEEEECCCCGGGCCHHH---HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred             EEeecccccchhcCCHHH---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence            345566666666554432   23 3567888899999999999999999998 44454                378899


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|+..|+++.+..+
T Consensus       202 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P  261 (336)
T 1p5q_A          202 LAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  261 (336)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC
Confidence            999999999999999999999999999999999999999999999999999999988654

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.29  E-value=9.4e-05  Score=67.97  Aligned_cols=162  Identities=10%  Similarity=0.057  Sum_probs=74.6

Q ss_pred             chHHHHHHHHHhcC--CchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCC-hHHHHHHHHHHHhhcCCCCChhHHHHH
Q 038522          401 ISWTSLIAGYAKHG--YGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGL-TCEGWELFTDMINKYRILPRAEHFSCV  477 (590)
Q Consensus       401 ~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l  477 (590)
                      .+|+.-.-.+.+.+  .+++++.+++++.+.. +-|...|+.-...+...|. ++++++.++.+.+.  .+-|...|+..
T Consensus       109 ~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R  185 (331)
T 3dss_A          109 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYR  185 (331)
T ss_dssp             HHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHH
T ss_pred             HHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence            34444333344444  2455555555555531 2244444444444444444 35555555555543  12233444443


Q ss_pred             HHHHHhc--------------CChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc-----------CCchHHHHHHHHHh
Q 038522          478 VDLFARR--------------GQLESAYNMIRQM-NIKP-TASLWSAILGACSIY-----------GNTSLGELAARNLF  530 (590)
Q Consensus       478 ~~~~~~~--------------g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~  530 (590)
                      ...+.+.              +.++++++.+.++ ...| |...|+-+-..+...           +.++++++.+++++
T Consensus       186 ~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~ell  265 (331)
T 3dss_A          186 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQ  265 (331)
T ss_dssp             HHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHH
Confidence            3333332              2345555555555 2222 444444333333222           23456666666666


Q ss_pred             cCCCCCcchHHHHHHHHH---hcCChHHHHHHHHHhhh
Q 038522          531 DMEPEKSVNYVVLSNIYT---AAGAWDNARKTRKLMEE  565 (590)
Q Consensus       531 ~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~~  565 (590)
                      ++.|++...+..++....   ..|..++...++.++.+
T Consensus       266 e~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~  303 (331)
T 3dss_A          266 ELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA  303 (331)
T ss_dssp             HHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred             hhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence            666655444444332211   24555666666666654

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.28  E-value=4.6e-07  Score=69.44  Aligned_cols=93  Identities=13%  Similarity=-0.005  Sum_probs=77.7

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC------cchHH
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK------SVNYV  541 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~  541 (590)
                      +...+..+...+.+.|++++|++.|++. ...| +...+..+..++...|++++|+..++++++++|++      ...+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            4556777888888999999999999887 3334 67788889999999999999999999999999987      77888


Q ss_pred             HHHHHHHhcCChHHHHHHHHH
Q 038522          542 VLSNIYTAAGAWDNARKTRKL  562 (590)
Q Consensus       542 ~l~~~~~~~g~~~~A~~~~~~  562 (590)
                      .++.++...|++++|.+.+++
T Consensus        83 ~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           83 RLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHhHhhhHhHHHH
Confidence            899999999988888776654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.27  E-value=9.3e-07  Score=70.87  Aligned_cols=105  Identities=12%  Similarity=-0.000  Sum_probs=79.5

Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-------------hhHHHHHHHHHHhcCChHHHHHHHHhc-CC----
Q 038522          438 FLSLLFACSHTGLTCEGWELFTDMINKYRILPR-------------AEHFSCVVDLFARRGQLESAYNMIRQM-NI----  499 (590)
Q Consensus       438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~----  499 (590)
                      +......+.+.|++++|+..|++..+-   .|+             ...|..+..++.+.|++++|+..+++. .+    
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            344455566677777777777777644   333             227778888888889998888888777 44    


Q ss_pred             ---CCC-HhHH----HHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHH
Q 038522          500 ---KPT-ASLW----SAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSN  545 (590)
Q Consensus       500 ---~p~-~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~  545 (590)
                         .|+ ...|    .....++...|++++|+..|+++++++|++...+..+..
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~  144 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER  144 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence               775 4577    888899999999999999999999999988777665543

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.27  E-value=0.0004  Score=63.83  Aligned_cols=193  Identities=9%  Similarity=0.035  Sum_probs=134.8

Q ss_pred             hHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC--ChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCC-chHHHHHH
Q 038522          350 LNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSG--EIADANRAFDEMGD---KNVISWTSLIAGYAKHGY-GHEAIELY  423 (590)
Q Consensus       350 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~-~~~a~~~~  423 (590)
                      ++.+..+++.+....++ +..+++.-.-++.+.+  .++++..+++.+.+   .|..+|+.-.-.+...|. ++++++.+
T Consensus        90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~  168 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  168 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence            56677777777776654 5666666666666667  47899999988874   456677777667777787 48999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHHhhcc--------------CChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhc----
Q 038522          424 KKMKHEGMVPNDVTFLSLLFACSHT--------------GLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARR----  484 (590)
Q Consensus       424 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~----  484 (590)
                      +++.+.. +-|...|+.....+...              +.++++++.+......   .| |...|+.+--.+.+.    
T Consensus       169 ~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~---~P~d~SaW~Y~r~ll~~~~~~~  244 (331)
T 3dss_A          169 DSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT---DPNDQSAWFYHRWLLGAGSGRC  244 (331)
T ss_dssp             HHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHSSSCGG
T ss_pred             HHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHhccCcc
Confidence            9999863 23566665554444433              4578899999988865   44 566776665555555    


Q ss_pred             -------CChHHHHHHHHhc-CCCCCHhHHHHHHHHH-----HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          485 -------GQLESAYNMIRQM-NIKPTASLWSAILGAC-----SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       485 -------g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                             +.++++++.++++ ...||. .|..+..+.     ...|..+++...+.++.+++|.....|..+...+.
T Consensus       245 ~~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~~  320 (331)
T 3dss_A          245 ELSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL  320 (331)
T ss_dssp             GCCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHHH
Confidence                   4578899999888 566764 444333222     24577789999999999999988888887765543

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.26  E-value=5.2e-06  Score=78.96  Aligned_cols=90  Identities=9%  Similarity=0.005  Sum_probs=79.2

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                      +...+..+..+|.+.|++++|++.++++ ...| +...+..+..++...|++++|+..++++++++|+++.++..++.++
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~  351 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK  351 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            3567888889999999999999999998 5555 5678888999999999999999999999999999999999999999


Q ss_pred             HhcCChHHHHHH
Q 038522          548 TAAGAWDNARKT  559 (590)
Q Consensus       548 ~~~g~~~~A~~~  559 (590)
                      ...++.+++.+.
T Consensus       352 ~~~~~~~~a~k~  363 (370)
T 1ihg_A          352 QKIKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHH
Confidence            999988887654

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.24  E-value=5.9e-06  Score=64.26  Aligned_cols=97  Identities=13%  Similarity=0.060  Sum_probs=66.8

Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHH
Q 038522          438 FLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACS  514 (590)
Q Consensus       438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  514 (590)
                      +..+...+.+.|++++|...+++..+.   .| +...+..+..++...|++++|+..|++. ...| +...+..+..++.
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~   96 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT   96 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            334455666777888888888777754   34 4667777777788888888888888777 4444 4567777888888


Q ss_pred             hcCCchHHHHHHHHHhcCCCCCc
Q 038522          515 IYGNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       515 ~~~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      ..|++++|+..++++++.+|.++
T Consensus        97 ~~g~~~~A~~~~~~al~~~P~~~  119 (121)
T 1hxi_A           97 NEHNANAALASLRAWLLSQPQYE  119 (121)
T ss_dssp             HHHHHHHHHHHHHHHHC------
T ss_pred             HcCCHHHHHHHHHHHHHhCcCCC
Confidence            88888888888888888888543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.22  E-value=1.2e-06  Score=67.81  Aligned_cols=92  Identities=13%  Similarity=0.083  Sum_probs=60.9

Q ss_pred             cCChHHHHHHHHHHHhhcCC-CC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHH
Q 038522          448 TGLTCEGWELFTDMINKYRI-LP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGE  523 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~  523 (590)
                      .|++++|+..|++..+. +. .| +...+..+..+|...|++++|++.|++. ...| +...+..+..++...|++++|+
T Consensus         3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            46677777777777642 10 13 3456667777777778888887777776 3333 4566777777888888888888


Q ss_pred             HHHHHHhcCCCCCcchH
Q 038522          524 LAARNLFDMEPEKSVNY  540 (590)
Q Consensus       524 ~~~~~~~~~~p~~~~~~  540 (590)
                      ..++++++..|+++...
T Consensus        82 ~~~~~al~~~p~~~~~~   98 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQ   98 (117)
T ss_dssp             HHHHHHHHHHCCCHHHH
T ss_pred             HHHHHHHHhCCCcHHHH
Confidence            88888888888666543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.20  E-value=4.6e-06  Score=81.75  Aligned_cols=129  Identities=13%  Similarity=0.086  Sum_probs=96.4

Q ss_pred             HhhccCChHHHHHHHHHHHhhcC--C---CCC-hhHHHHHHHHHHhcCChHHHHHHHHhc---------CCCCC-HhHHH
Q 038522          444 ACSHTGLTCEGWELFTDMINKYR--I---LPR-AEHFSCVVDLFARRGQLESAYNMIRQM---------NIKPT-ASLWS  507 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~--~---~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~~~  507 (590)
                      .+...|++++|..++++..+...  +   .|+ ..+++.|..+|...|++++|..++++.         ...|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            34567888888888877665421  1   122 457788888888889998888888775         23343 35678


Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhc-----CCCCCcch---HHHHHHHHHhcCChHHHHHHHHHhhhcCCccCC
Q 038522          508 AILGACSIYGNTSLGELAARNLFD-----MEPEKSVN---YVVLSNIYTAAGAWDNARKTRKLMEERSLRKNP  572 (590)
Q Consensus       508 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  572 (590)
                      .|...|...|++++|+..++++++     ++|++|.+   ...+..++..+|++++|..++..++++..+..|
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~~~~  470 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALNNQP  470 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            899999999999999999999983     56777665   457788999999999999999999886544444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.20  E-value=3.7e-06  Score=69.55  Aligned_cols=79  Identities=10%  Similarity=0.011  Sum_probs=63.5

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc-chHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS-VNYVVLSNIY  547 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~  547 (590)
                      ...+..+..+|.+.|++++|+..+++. .+.| +...|..+..++...|++++|+..++++++++|+++ .....+..+.
T Consensus        63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~  142 (162)
T 3rkv_A           63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVT  142 (162)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            457778888899999999999999887 4444 567888899999999999999999999999999877 5555555544


Q ss_pred             Hh
Q 038522          548 TA  549 (590)
Q Consensus       548 ~~  549 (590)
                      ..
T Consensus       143 ~~  144 (162)
T 3rkv_A          143 ER  144 (162)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.16  E-value=5.9e-06  Score=61.69  Aligned_cols=65  Identities=18%  Similarity=0.085  Sum_probs=54.6

Q ss_pred             CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      +...+..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|++.+++..+.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            56677788888888888888888888888888888888888888888888888888888877653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.13  E-value=5.7e-06  Score=63.75  Aligned_cols=63  Identities=16%  Similarity=0.088  Sum_probs=33.0

Q ss_pred             HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          503 ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       503 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      ...+..+...+...|++++|+..++++++.+|.++..+..++.+|...|++++|.+.+++..+
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444555555555555555555555555555555555555555555555555555555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.13  E-value=4.5e-06  Score=78.51  Aligned_cols=118  Identities=8%  Similarity=-0.066  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHH
Q 038522          435 DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACS  514 (590)
Q Consensus       435 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~  514 (590)
                      ...+..+...+.+.|++++|...|++....   .|+...       +...|+.+++...+.       ...|..+..++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~-------~~~~~nla~~~~  241 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK-------NPCHLNIAACLI  241 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH-------THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH-------HHHHHHHHHHHH
Confidence            455667777888888999999988888754   344321       223444445444332       237888889999


Q ss_pred             hcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          515 IYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       515 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      +.|++++|+..++++++++|.++.+|..++.+|...|++++|++.|+++.+....
T Consensus       242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~  296 (338)
T 2if4_A          242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD  296 (338)
T ss_dssp             TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence            9999999999999999999999999999999999999999999999998876543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.10  E-value=8.6e-05  Score=74.73  Aligned_cols=168  Identities=8%  Similarity=-0.043  Sum_probs=133.3

Q ss_pred             ChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCC----------chHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccC
Q 038522          384 EIADANRAFDEMGD--K-NVISWTSLIAGYAKHGY----------GHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTG  449 (590)
Q Consensus       384 ~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~  449 (590)
                      ..++|.+.++++..  | +...|+.--..+...++          ++++++.++++.+.  .| +...|..-...+.+.+
T Consensus        44 ~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence            34677888887763  3 34466666566666666          89999999999985  45 6788888888888888


Q ss_pred             --ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC-ChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc--------
Q 038522          450 --LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG-QLESAYNMIRQM-NIKP-TASLWSAILGACSIY--------  516 (590)
Q Consensus       450 --~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~--------  516 (590)
                        +++++++.++++.+.  -+-+...|+.-..++.+.| .++++++.++++ ...| |..+|+.....+...        
T Consensus       122 ~~~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence              679999999999976  2335778888777888888 899999999998 5555 667787777666553        


Q ss_pred             ------CCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 038522          517 ------GNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDN  555 (590)
Q Consensus       517 ------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  555 (590)
                            +.++++++.+.+++..+|++..+|..+.+++...|++++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence                  557899999999999999999999999999999998665

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.09  E-value=3.2e-05  Score=75.75  Aligned_cols=159  Identities=9%  Similarity=0.001  Sum_probs=119.3

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCc----------------HHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVPN----------------DVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR  470 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~  470 (590)
                      ...+.+.|++++|++.|.++.+......                ...+..+...|...|++++|.+.+..+.+..+..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            4456778999999999999987532211                124677889999999999999999998765333333


Q ss_pred             hh----HHHHHHHHHHhcCChHHHHHHHHhc-------CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcC------
Q 038522          471 AE----HFSCVVDLFARRGQLESAYNMIRQM-------NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDM------  532 (590)
Q Consensus       471 ~~----~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------  532 (590)
                      ..    +.+.+...+...|++++|.+++++.       +..+. ..++..+...+...|++++|...++++...      
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~  170 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD  170 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred             hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence            22    2333344455678999999988776       22332 456788899999999999999999998742      


Q ss_pred             CCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          533 EPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       533 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .|....++..++.+|...|++++|..++++...
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~  203 (434)
T 4b4t_Q          171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART  203 (434)
T ss_dssp             STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence            233455788999999999999999999998876

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.09  E-value=1.3e-05  Score=58.37  Aligned_cols=81  Identities=16%  Similarity=0.277  Sum_probs=61.6

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      ...+..+...+...|++++|+..+++. ...| +...+..+...+...|++++|+..++++++.+|.++.++..++.++.
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~   88 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ   88 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            445666777777788888888888776 3233 55677778888888888888888888888888888888888888877


Q ss_pred             hcC
Q 038522          549 AAG  551 (590)
Q Consensus       549 ~~g  551 (590)
                      ..|
T Consensus        89 ~~g   91 (91)
T 1na3_A           89 KQG   91 (91)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.08  E-value=1.7e-05  Score=57.73  Aligned_cols=74  Identities=16%  Similarity=0.060  Sum_probs=63.5

Q ss_pred             CCCHhHHHHHHHHHHhcCC---chHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCccCCCc
Q 038522          500 KPTASLWSAILGACSIYGN---TSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRKNPGY  574 (590)
Q Consensus       500 ~p~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  574 (590)
                      ++++..+..+..++...++   .++|...++++++.+|+++.+...++..+...|++++|+..|+++.+.... .|+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~   79 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDR   79 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCH
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccH
Confidence            4567778888877764444   799999999999999999999999999999999999999999999998776 6554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.08  E-value=1.2e-05  Score=76.30  Aligned_cols=67  Identities=10%  Similarity=-0.004  Sum_probs=62.0

Q ss_pred             CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|++.++++.+...
T Consensus       272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P  338 (370)
T 1ihg_A          272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  338 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            4567888899999999999999999999999999999999999999999999999999999988654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.08  E-value=8.4e-06  Score=80.18  Aligned_cols=120  Identities=5%  Similarity=-0.054  Sum_probs=97.5

Q ss_pred             ccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC----------------HhHHHH
Q 038522          447 HTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT----------------ASLWSA  508 (590)
Q Consensus       447 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~----------------~~~~~~  508 (590)
                      ..+++++|...|+.....   .| ....+..+...|.+.|++++|+..|+++ ...|+                ...|..
T Consensus       246 ~l~~~~~A~~~~~~~~~~---~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n  322 (457)
T 1kt0_A          246 TLKSFEKAKESWEMDTKE---KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN  322 (457)
T ss_dssp             EEEEEECCCCGGGSCHHH---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhcccCcchhhcCHHH---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence            344555666555544432   22 3556778889999999999999999998 33333                478888


Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          509 ILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      +..++.+.|++++|+..++++++++|+++.+|..++.+|...|++++|+..|+++.+..+.
T Consensus       323 la~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~  383 (457)
T 1kt0_A          323 LAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ  383 (457)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence            9999999999999999999999999999999999999999999999999999999886543

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.06  E-value=1.7e-05  Score=65.20  Aligned_cols=131  Identities=12%  Similarity=0.019  Sum_probs=71.5

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCC---CC--cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC----hhH
Q 038522          403 WTSLIAGYAKHGYGHEAIELYKKMKHEGM---VP--NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR----AEH  473 (590)
Q Consensus       403 ~~~l~~~~~~~~~~~~a~~~~~~m~~~g~---~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~  473 (590)
                      +..+...+...|++++|+..+++..+...   .+  ...++..+...+...|++++|.+.+++..+.....++    ...
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            33444444555555555555554443200   00  0134555555666666666666666665543111111    334


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhc-------CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038522          474 FSCVVDLFARRGQLESAYNMIRQM-------NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDME  533 (590)
Q Consensus       474 ~~~l~~~~~~~g~~~~A~~~~~~~-------~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  533 (590)
                      +..+...+...|++++|.+.+++.       +.++ ....+..+...+...|++++|...+++++++.
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~  159 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS  159 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence            555666667777777777776665       1111 12345666777778888888888888777543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.04  E-value=3.2e-06  Score=67.61  Aligned_cols=86  Identities=14%  Similarity=0.070  Sum_probs=59.4

Q ss_pred             hcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522          483 RRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGN----------TSLGELAARNLFDMEPEKSVNYVVLSNIYTAA  550 (590)
Q Consensus       483 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  550 (590)
                      +.+.+++|.+.+++. ...| +...|..+..++...++          +++|+..|+++++++|+++.+|+.++.+|...
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            334455555555555 2223 44555555555554444          56888889999999998888889999888877


Q ss_pred             C-----------ChHHHHHHHHHhhhcCC
Q 038522          551 G-----------AWDNARKTRKLMEERSL  568 (590)
Q Consensus       551 g-----------~~~~A~~~~~~~~~~~~  568 (590)
                      |           ++++|++.|++..+.++
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P  122 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQP  122 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence            4           88888888888877654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.02  E-value=3.1e-05  Score=76.51  Aligned_cols=115  Identities=13%  Similarity=0.004  Sum_probs=65.9

Q ss_pred             HHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCCh
Q 038522          409 GYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQL  487 (590)
Q Consensus       409 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  487 (590)
                      .+.+.|++++|.+.+++..+.  .| +...+..+..++.+.|++++|++.+++..+.  .+.+...+..+..+|...|++
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~~   90 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGKF   90 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence            344556666666666666654  33 4566666666666777777777777666642  122355666666667777777


Q ss_pred             HHHHHHHHhc-CCCC-CHhHHHHHHHH--HHhcCCchHHHHHHH
Q 038522          488 ESAYNMIRQM-NIKP-TASLWSAILGA--CSIYGNTSLGELAAR  527 (590)
Q Consensus       488 ~~A~~~~~~~-~~~p-~~~~~~~l~~~--~~~~~~~~~a~~~~~  527 (590)
                      ++|++.++++ ...| +...+..+..+  +...|++++|++.++
T Consensus        91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7777777666 2233 23344444444  556677777777777

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.91  E-value=2.8e-05  Score=59.16  Aligned_cols=69  Identities=10%  Similarity=-0.022  Sum_probs=63.1

Q ss_pred             CCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          501 PTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       501 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      ++...+..+...+...|++++|+..++++++..|.++.++..++.+|...|++++|++.+++..+....
T Consensus         2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   70 (111)
T 2l6j_A            2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTST   70 (111)
T ss_dssp             THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSS
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence            356678888899999999999999999999999999999999999999999999999999999876543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.85  E-value=0.00013  Score=58.03  Aligned_cols=111  Identities=5%  Similarity=-0.142  Sum_probs=66.6

Q ss_pred             ChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHH
Q 038522          450 LTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELA  525 (590)
Q Consensus       450 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~  525 (590)
                      ++++|.+.|++..+. + .|+..    |...|...+.+++|.++|++.-..-++..+..+...|..    .+++++|+..
T Consensus        10 d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A           10 DLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             HHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            455555555555543 3 12221    444555555555566666655112345555566666655    5677777777


Q ss_pred             HHHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhcCC
Q 038522          526 ARNLFDMEPEKSVNYVVLSNIYTA----AGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       526 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~  568 (590)
                      ++++.+.  .++.++..|+.+|..    .+++++|.+++++..+.|.
T Consensus        84 ~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           84 YSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            7777665  356677777777777    7777777777777766653

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.78  E-value=0.00073  Score=67.99  Aligned_cols=151  Identities=6%  Similarity=-0.047  Sum_probs=122.1

Q ss_pred             CCchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhccCC----------hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 038522          414 GYGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSHTGL----------TCEGWELFTDMINKYRILPRAEHFSCVVDLFA  482 (590)
Q Consensus       414 ~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  482 (590)
                      ...++|++.++++.+.  .|+ ...|+.--.++...|+          ++++++.++.+.+.  .+-+...|..-..++.
T Consensus        43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~  118 (567)
T 1dce_A           43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLS  118 (567)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHH
Confidence            3457889999999985  664 4556655556666666          89999999999975  2335778888788888


Q ss_pred             hcC--ChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcC-CchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc-------
Q 038522          483 RRG--QLESAYNMIRQM-NIKP-TASLWSAILGACSIYG-NTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA-------  550 (590)
Q Consensus       483 ~~g--~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------  550 (590)
                      +.|  +++++++.++++ ...| +..+|+.-..+....| .++++++.++++++.+|.+..+|...+.++.+.       
T Consensus       119 ~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          119 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             TCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             HcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccc
Confidence            899  679999999999 4444 6778888888888888 899999999999999999999999999998874       


Q ss_pred             -------CChHHHHHHHHHhhhcCC
Q 038522          551 -------GAWDNARKTRKLMEERSL  568 (590)
Q Consensus       551 -------g~~~~A~~~~~~~~~~~~  568 (590)
                             +.+++|++.++++....+
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~~P  223 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFTDP  223 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred             ccccccHHHHHHHHHHHHHHHhhCC
Confidence                   567899999988877554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.77  E-value=5.8e-05  Score=54.85  Aligned_cols=67  Identities=18%  Similarity=0.236  Sum_probs=61.2

Q ss_pred             CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +...+..+...+...|++++|+..++++++..|.++..+..++.+|...|++++|.+.+++..+..+
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p   74 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP   74 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            3457788888999999999999999999999999999999999999999999999999999888653

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.65  E-value=0.00015  Score=55.62  Aligned_cols=80  Identities=13%  Similarity=0.071  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522          453 EGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLF  530 (590)
Q Consensus       453 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  530 (590)
                      +|+..+++..+.  .+.+...+..+...|...|++++|+..|++. ...| +...|..+..++...|++++|...+++++
T Consensus         3 ~a~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQ--GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTT--TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            455666666642  1224566777777777777777777777776 3333 45667777777888888888888888888


Q ss_pred             cCCC
Q 038522          531 DMEP  534 (590)
Q Consensus       531 ~~~p  534 (590)
                      +..|
T Consensus        81 ~~~~   84 (115)
T 2kat_A           81 AAAQ   84 (115)
T ss_dssp             HHHH
T ss_pred             Hhcc
Confidence            7776

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.61  E-value=5.5e-05  Score=60.47  Aligned_cols=89  Identities=15%  Similarity=0.116  Sum_probs=53.5

Q ss_pred             ChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCC----------hHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc
Q 038522          450 LTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQ----------LESAYNMIRQM-NIKP-TASLWSAILGACSIY  516 (590)
Q Consensus       450 ~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~  516 (590)
                      .+++|.+.++...+.   .| +...|..+..++...++          +++|+..|++. .+.| +...|..+..+|...
T Consensus        17 ~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l   93 (158)
T 1zu2_A           17 LFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   93 (158)
T ss_dssp             HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence            344455555544432   22 34444444444444433          34666666666 4444 345666677776655


Q ss_pred             -----------CCchHHHHHHHHHhcCCCCCcchHH
Q 038522          517 -----------GNTSLGELAARNLFDMEPEKSVNYV  541 (590)
Q Consensus       517 -----------~~~~~a~~~~~~~~~~~p~~~~~~~  541 (590)
                                 |++++|++.|+++++++|++.....
T Consensus        94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~  129 (158)
T 1zu2_A           94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLK  129 (158)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHH
Confidence                       5899999999999999997654433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.61  E-value=6.5e-05  Score=55.73  Aligned_cols=81  Identities=9%  Similarity=0.090  Sum_probs=57.9

Q ss_pred             HHHHHHhcCChHHHHHHHHhc-CCCC-CHh-HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 038522          477 VVDLFARRGQLESAYNMIRQM-NIKP-TAS-LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAW  553 (590)
Q Consensus       477 l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~  553 (590)
                      ....+.+.|++++|.+.++++ ...| +.. .+..+..++...|++++|+..++++++++|+++.++..        +.+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~   77 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV   77 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence            345667788888888888877 3344 456 77778888888888888888888888888877776632        455


Q ss_pred             HHHHHHHHHhhh
Q 038522          554 DNARKTRKLMEE  565 (590)
Q Consensus       554 ~~A~~~~~~~~~  565 (590)
                      .++...+++..+
T Consensus        78 ~~a~~~~~~~~~   89 (99)
T 2kc7_A           78 MDILNFYNKDMY   89 (99)
T ss_dssp             HHHHHHHCCTTH
T ss_pred             HHHHHHHHHHhc
Confidence            566666655433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.58  E-value=0.0003  Score=68.94  Aligned_cols=123  Identities=12%  Similarity=-0.002  Sum_probs=83.4

Q ss_pred             HHHhcCCchHHHHHHHHHHHcC---CC---C-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhc----C-CCCC-hhHHH
Q 038522          409 GYAKHGYGHEAIELYKKMKHEG---MV---P-NDVTFLSLLFACSHTGLTCEGWELFTDMINKY----R-ILPR-AEHFS  475 (590)
Q Consensus       409 ~~~~~~~~~~a~~~~~~m~~~g---~~---p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~-~~~~~  475 (590)
                      .+...|++++|..++++..+..   +-   | ...+++.|...|...|++++|..++++...-+    | ..|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            3456777888877777765421   12   2 23567778888888888888888877765431    2 1232 45678


Q ss_pred             HHHHHHHhcCChHHHHHHHHhc--------C-CCCCH-hHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522          476 CVVDLFARRGQLESAYNMIRQM--------N-IKPTA-SLWSAILGACSIYGNTSLGELAARNLFD  531 (590)
Q Consensus       476 ~l~~~~~~~g~~~~A~~~~~~~--------~-~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~  531 (590)
                      .|...|...|++++|+.+++++        | ..|+. .+.+.+..++...+.+++|+..|+++.+
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888899999888888776        2 22322 3345566677788889999988888764

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.52  E-value=0.00021  Score=68.88  Aligned_cols=82  Identities=7%  Similarity=0.013  Sum_probs=59.0

Q ss_pred             cCChHHHHHHHHhc---------CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhc-----CCCCCcc---hHHHHHH
Q 038522          484 RGQLESAYNMIRQM---------NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFD-----MEPEKSV---NYVVLSN  545 (590)
Q Consensus       484 ~g~~~~A~~~~~~~---------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~  545 (590)
                      .|++++|+.++++.         ...|+ ..+++.+..+|...|++++|+..++++++     +.|++|.   .++.|+.
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  390 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR  390 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence            45666666666554         12222 25677788888888888888888888873     3454444   4888999


Q ss_pred             HHHhcCChHHHHHHHHHhhh
Q 038522          546 IYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       546 ~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +|..+|++++|..++++..+
T Consensus       391 ~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          391 LYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHH
Confidence            99999999999999988866

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.51  E-value=0.00019  Score=53.07  Aligned_cols=62  Identities=18%  Similarity=0.244  Sum_probs=56.2

Q ss_pred             HHHHHHhcCCchHHHHHHHHHhcCCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522          509 ILGACSIYGNTSLGELAARNLFDMEPEKSV-NYVVLSNIYTAAGAWDNARKTRKLMEERSLRK  570 (590)
Q Consensus       509 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  570 (590)
                      ....+...|++++|+..++++++.+|.++. .+..++.+|...|++++|++.+++..+..+..
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~   68 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS   68 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence            455677899999999999999999999999 99999999999999999999999998876543

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.51  E-value=0.00013  Score=68.53  Aligned_cols=237  Identities=9%  Similarity=0.046  Sum_probs=162.2

Q ss_pred             chhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhc
Q 038522           64 NLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGVRANQFTYSSALRACAR  143 (590)
Q Consensus        64 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~  143 (590)
                      .+.+|..|..+....+.+.+|++-|-+  ..|+..|..+|.+..+.|.+++-++.+...++..-.|  ..=+.++-+|++
T Consensus        53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk  128 (624)
T 3lvg_A           53 EPAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAK  128 (624)
T ss_dssp             CCCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHT
T ss_pred             CccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHh
Confidence            456788888888888888887765533  3566778888988888899998888888776654333  334567888888


Q ss_pred             cCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC------------------------CCcch
Q 038522          144 MRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER------------------------KDVVS  199 (590)
Q Consensus       144 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------------------------~~~~~  199 (590)
                      .+++.+.++++.       .|+..-...+.+-|...|.++.|.-+|..+..                        .++.+
T Consensus       129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt  201 (624)
T 3lvg_A          129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT  201 (624)
T ss_dssp             SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred             hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence            888776655542       46666666778888888888888888776642                        36788


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHh
Q 038522          200 WNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAK  279 (590)
Q Consensus       200 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  279 (590)
                      |-.+-.+|...+.+.-|.-.--.++-   .||  -...++..|...|.+++...+++.-.... .....+|+.|.-.|++
T Consensus       202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsK  275 (624)
T 3lvg_A          202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK  275 (624)
T ss_dssp             HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHh
Confidence            99999999999988877655444431   222  22335566788888888888888766322 3456678888877877


Q ss_pred             cCChHHHHHHHHhccC----C-------CccchHHHHHHHHhcCCChHHHH
Q 038522          280 YGSIRSAYQLYRSMLK----T-------DIISCTALISGFARDDNHSKEAF  319 (590)
Q Consensus       280 ~g~~~~a~~~~~~~~~----~-------~~~~~~~l~~~~~~~~~~~~~a~  319 (590)
                      - +.++..+-++....    |       ....|..++-.|.+-.+ ++.|.
T Consensus       276 Y-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE-~DnA~  324 (624)
T 3lvg_A          276 F-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE-YDNAI  324 (624)
T ss_dssp             S-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTC-HHHHH
T ss_pred             c-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchh-HHHHH
Confidence            5 44555555444311    1       33457777777777666 66553

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.44  E-value=0.00039  Score=67.10  Aligned_cols=87  Identities=11%  Similarity=0.175  Sum_probs=60.2

Q ss_pred             HHHHhcCChHHHHHHHHhc------CCCCC----HhHHHHHHHHHHhcCCchHHHHHHHHHhc-----CCCCCcc---hH
Q 038522          479 DLFARRGQLESAYNMIRQM------NIKPT----ASLWSAILGACSIYGNTSLGELAARNLFD-----MEPEKSV---NY  540 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~~------~~~p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~---~~  540 (590)
                      ..+.+.|++++|++++++.      -+.|+    ..+++.++.+|...|++++|+..++++++     +.|++|.   .+
T Consensus       295 e~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l  374 (429)
T 3qwp_A          295 EELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQV  374 (429)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHH
Confidence            3345566777777776655      11221    24567777788888888888888888773     3444444   47


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          541 VVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       541 ~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +.|+.+|..+|++++|..++++..+
T Consensus       375 ~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          375 MKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            7888888899999998888888765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.39  E-value=0.00038  Score=51.65  Aligned_cols=65  Identities=5%  Similarity=-0.019  Sum_probs=44.1

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      +...+..+...|...|++++|++.|+++ ...| +...|..+..+|...|++++|+..+++++++.|
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~   72 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR   72 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence            3556666677777777777777777766 3333 455667777777777777777777777776655

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=97.39  E-value=0.02  Score=43.26  Aligned_cols=140  Identities=11%  Similarity=0.070  Sum_probs=99.5

Q ss_pred             HhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHH
Q 038522          411 AKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESA  490 (590)
Q Consensus       411 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  490 (590)
                      .-.|..++..++..+....   .+..-|+.++--....-+-+-..++++.+-+-+.+              ..+|+....
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKrV   80 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKSV   80 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHHH
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHHH
Confidence            3457778888888887763   24444555554444555556666677666543222              235555555


Q ss_pred             HHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          491 YNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       491 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      ..-+-.++  .+...++..+.....+|.-++-.+++..++...|.+|.....++.+|.+.|+..+|.+++.++-++|++
T Consensus        81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            55555553  234456667777889999999999999987777769999999999999999999999999999999875

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.38  E-value=0.0027  Score=50.32  Aligned_cols=112  Identities=8%  Similarity=-0.059  Sum_probs=89.3

Q ss_pred             CCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHH
Q 038522          414 GYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR----RGQLES  489 (590)
Q Consensus       414 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~  489 (590)
                      +++++|++.|++..+.| .|+..    +...|...+.+++|.+.|++..+.    .+...+..|...|..    .+++++
T Consensus         9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~   79 (138)
T 1klx_A            9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK   79 (138)
T ss_dssp             HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence            46788999999998887 44444    666677778888899999998864    366777888888887    789999


Q ss_pred             HHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCC
Q 038522          490 AYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       490 A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p  534 (590)
                      |.++|++.-..-++.....+...|..    .+++++|+..++++.+...
T Consensus        80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999988223467778888888887    7899999999999988754

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=97.36  E-value=0.00028  Score=66.34  Aligned_cols=400  Identities=12%  Similarity=0.089  Sum_probs=195.7

Q ss_pred             ccccccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChH
Q 038522            3 IVRANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVL   82 (590)
Q Consensus         3 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~   82 (590)
                      |..+....|+..+|++.|-++    -|+..|..++.++.+.|.+++-.+.+.-..+.  ..++..=+.|+-+|++.++..
T Consensus        60 LgkAqL~~~~v~eAIdsyIkA----~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~  133 (624)
T 3lvg_A           60 LAKAQLQKGMVKEAIDSYIKA----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLA  133 (624)
T ss_dssp             HHHHTTTSSSCTTTTTSSCCC----SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSS
T ss_pred             HHHHHHccCchHHHHHHHHhC----CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHH
Confidence            345566667777777766653    45556777777777777777777766655443  334445556777777777655


Q ss_pred             HHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHc--------------------CCCCCHhhHHHHHHHHh
Q 038522           83 SARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRS--------------------GVRANQFTYSSALRACA  142 (590)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------------~~~p~~~~~~~ll~~~~  142 (590)
                      +.++++.   .||..-...+.+-|...|.++.|.-+|..+...                    .-.-+..||..+-.+|.
T Consensus       134 elEefl~---~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACv  210 (624)
T 3lvg_A          134 ELEEFIN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACV  210 (624)
T ss_dssp             TTTSTTS---CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHH
T ss_pred             HHHHHHc---CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHh
Confidence            4432221   144444444444444444444443333322110                    00124445555555555


Q ss_pred             ccC------------------------------chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhcc
Q 038522          143 RMR------------------------------WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERI  192 (590)
Q Consensus       143 ~~~------------------------------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  192 (590)
                      ..+                              .+++...+++.-... -.....+|+-|.-.|++- +.++..+.++..
T Consensus       211 d~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf  288 (624)
T 3lvg_A          211 DGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELF  288 (624)
T ss_dssp             HSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTS
T ss_pred             CchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence            554                              444444444444321 123456777777777765 445555554443


Q ss_pred             CC----C-------CcchHHHHHHHHHhcCCchHHHHHH-------------HHHHHcCCCCChhhHHHHHHHhccCCCh
Q 038522          193 ER----K-------DVVSWNAMIGGLAMQGFNDDSFWLF-------------RSMMRQGMKPDCFTLGSILRASVGGIEL  248 (590)
Q Consensus       193 ~~----~-------~~~~~~~li~~~~~~~~~~~a~~~~-------------~~m~~~~~~p~~~~~~~ll~~~~~~~~~  248 (590)
                      -.    |       ....|.-++-.|.+-.+++.|....             .+...+  ..|...|-..+.-|....- 
T Consensus       289 ~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltMi~h~~~Aw~h~~Fkdii~K--VaN~EiyYKAi~FYL~e~P-  365 (624)
T 3lvg_A          289 WSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITK--VANVELYYRAIQFYLEFKP-  365 (624)
T ss_dssp             SSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTTTSCHHHHCCGGGGTTTGGG--CSCSHHHHHHHHHHTTSCC-
T ss_pred             HHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHHHhCChhhccHHHHHHHHHH--cchHHHHHHHHHHHHHhCh-
Confidence            22    1       3456788888888877777665431             111111  2333444444444433211 


Q ss_pred             hHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHH-HHHHHHhcCCChHHHHHHHHHHHH
Q 038522          249 MKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTA-LISGFARDDNHSKEAFDLFKDMIL  327 (590)
Q Consensus       249 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~~a~~~~~~~~~  327 (590)
                      ...-+++..+. ..+.++     ..++.+.+.|++.-....+..+...|...-|. +-..+....+ ++.-    +.   
T Consensus       366 ~lL~DLL~vL~-prlDh~-----RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IEEED-y~~L----R~---  431 (624)
T 3lvg_A          366 LLLNDLLMVLS-PRLDHT-----RAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEED-YQAL----RT---  431 (624)
T ss_dssp             TTSHHHHHHHC-TTCCST-----TTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHHTTC-CHHH----HH---
T ss_pred             HHHHHHHHhcc-ccCChH-----HHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhhhhh-HHHH----HH---
Confidence            01111111110 011111     12334445555555555555554444443333 3334444444 3321    11   


Q ss_pred             cCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHH
Q 038522          328 KKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLI  407 (590)
Q Consensus       328 ~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~  407 (590)
                                  .+..|.+-.....|.++    .+   ..-...-..-...|.+.++|.++..+..+=     ..|.-.|
T Consensus       432 ------------SId~ydNFD~i~LA~rL----Ek---HeL~eFRrIAA~LYkkn~rw~qsi~l~KkD-----klykDAi  487 (624)
T 3lvg_A          432 ------------SIDAYDNFDNISLAQRL----EK---HELIEFRRIAAYLFKGNNRWKQSVELCKKD-----SLYKDAM  487 (624)
T ss_dssp             ------------TTSSCCCSCTTHHHHHH----HT---CSSHHHHHHHHHHHHTTCHHHHHSSCSSTT-----CCTTGGG
T ss_pred             ------------HHHHhccccHHHHHHHH----hh---CchHHHHHHHHHHHHhcccHHHHHHHHHhc-----ccHHHHH
Confidence                        11122222222222222    11   112233344455677777887776654321     1222234


Q ss_pred             HHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHH
Q 038522          408 AGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWEL  457 (590)
Q Consensus       408 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  457 (590)
                      ......|+.+-|.++++-..+.|   +...|...+-.|...=+++-++++
T Consensus       488 etAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl  534 (624)
T 3lvg_A          488 QYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET  534 (624)
T ss_dssp             TTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence            44456777888888888887755   445666777777776666666654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.30  E-value=0.0018  Score=59.73  Aligned_cols=68  Identities=18%  Similarity=0.159  Sum_probs=41.3

Q ss_pred             CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          500 KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       500 ~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +.++.++..+...+...|+++.|...+++++.++| +...|..++.++.-.|++++|.+.+++....++
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            33455555555555555666666666666666665 455556666666666666666666666655443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.27  E-value=0.0055  Score=56.54  Aligned_cols=138  Identities=10%  Similarity=0.040  Sum_probs=90.8

Q ss_pred             CCcchHHHHHHHHHh--cC---CchHHHHHHHHHHHcCCCCc-HHHHHHHHHHhhc---cC-----ChHHHHHHHHHHHh
Q 038522          398 KNVISWTSLIAGYAK--HG---YGHEAIELYKKMKHEGMVPN-DVTFLSLLFACSH---TG-----LTCEGWELFTDMIN  463 (590)
Q Consensus       398 ~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~---~~-----~~~~a~~~~~~~~~  463 (590)
                      .+...|...+++...  .+   ...+|..+|++..+.  .|+ ...+..+..++..   .+     ........++....
T Consensus       192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a  269 (372)
T 3ly7_A          192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT  269 (372)
T ss_dssp             SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence            356666666654432  22   346788888888875  664 3444443333321   11     11111112222111


Q ss_pred             hcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522          464 KYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       464 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      ....+.+...+..+...+...|++++|...++++ .+.|+...|..+...+...|++++|.+.+++++.++|..+
T Consensus       270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence            1123556778888877788889999999999998 5558888888888899999999999999999999999543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.22  E-value=0.00092  Score=58.90  Aligned_cols=87  Identities=9%  Similarity=0.108  Sum_probs=62.1

Q ss_pred             HHHHHHHHhc-CCCCC---HhHHHHHHHHHHh-----cCCchHHHHHHHHHhcCCCCC-cchHHHHHHHHHhc-CChHHH
Q 038522          488 ESAYNMIRQM-NIKPT---ASLWSAILGACSI-----YGNTSLGELAARNLFDMEPEK-SVNYVVLSNIYTAA-GAWDNA  556 (590)
Q Consensus       488 ~~A~~~~~~~-~~~p~---~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A  556 (590)
                      .+|...+++. .+.|+   ...|..+...|..     -|+.++|.+.|+++++++|+. ...+..++..++.. |+.++|
T Consensus       180 ~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a  259 (301)
T 3u64_A          180 HAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGF  259 (301)
T ss_dssp             HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence            4455555555 45555   4466777777766     378888888888888888854 88888888888774 888888


Q ss_pred             HHHHHHhhhcCCccCCCc
Q 038522          557 RKTRKLMEERSLRKNPGY  574 (590)
Q Consensus       557 ~~~~~~~~~~~~~~~~~~  574 (590)
                      .+++++.....++.+|+.
T Consensus       260 ~~~L~kAL~a~p~~~P~~  277 (301)
T 3u64_A          260 DEALDRALAIDPESVPHN  277 (301)
T ss_dssp             HHHHHHHHHCCGGGCSSC
T ss_pred             HHHHHHHHcCCCCCCCCh
Confidence            888888888777755543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.12  E-value=0.001  Score=52.55  Aligned_cols=91  Identities=7%  Similarity=-0.100  Sum_probs=63.6

Q ss_pred             CChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcC---ChHHHHHHHHhc-CCC-C--CHhHHHHHHHHHHhcCCchH
Q 038522          449 GLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRG---QLESAYNMIRQM-NIK-P--TASLWSAILGACSIYGNTSL  521 (590)
Q Consensus       449 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~  521 (590)
                      .....+.+.|.+.... + .++..+.-.+..++.+.+   +.++++.++++. ... |  +...+-.+.-+|.+.|++++
T Consensus        12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~   89 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK   89 (152)
T ss_dssp             HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred             HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence            3455666666666553 3 367777777778888877   556888888877 223 5  34566667777888888888


Q ss_pred             HHHHHHHHhcCCCCCcchHH
Q 038522          522 GELAARNLFDMEPEKSVNYV  541 (590)
Q Consensus       522 a~~~~~~~~~~~p~~~~~~~  541 (590)
                      |++.++++++.+|++..+..
T Consensus        90 A~~y~~~lL~ieP~n~QA~~  109 (152)
T 1pc2_A           90 ALKYVRGLLQTEPQNNQAKE  109 (152)
T ss_dssp             HHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHhcCCCCHHHHH
Confidence            88888888888886655443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.12  E-value=0.0029  Score=60.92  Aligned_cols=95  Identities=13%  Similarity=0.031  Sum_probs=67.2

Q ss_pred             ccCChHHHHHHHHHHHhhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc---------CCCCCH-hHHHHHH
Q 038522          447 HTGLTCEGWELFTDMINKY--RILPR----AEHFSCVVDLFARRGQLESAYNMIRQM---------NIKPTA-SLWSAIL  510 (590)
Q Consensus       447 ~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~~-~~~~~l~  510 (590)
                      ..|++++|..++++..+..  -+.|+    ..+++.|..+|...|++++|+.++++.         ...|+. .+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            4467788888877766532  12222    456778888888888888888888776         234433 4678888


Q ss_pred             HHHHhcCCchHHHHHHHHHhc-----CCCCCcchHH
Q 038522          511 GACSIYGNTSLGELAARNLFD-----MEPEKSVNYV  541 (590)
Q Consensus       511 ~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~  541 (590)
                      ..|...|++++|+..++++++     ++|++|.+-.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~  425 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISE  425 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHH
Confidence            899999999999999999884     5676665543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.99  E-value=0.0041  Score=46.26  Aligned_cols=75  Identities=15%  Similarity=0.082  Sum_probs=57.3

Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-----C----CCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchH
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM-----N----IKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNY  540 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~----~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~  540 (590)
                      +..-+-.+...+.+.|++..|..+|+.+     .    -.+....+..+..++.+.|+++.|...+++++++.|+++.+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            3444556777778888888888888776     1    123456788888999999999999999999999999887776


Q ss_pred             HHHH
Q 038522          541 VVLS  544 (590)
Q Consensus       541 ~~l~  544 (590)
                      ..+.
T Consensus        84 ~n~~   87 (104)
T 2v5f_A           84 GNLK   87 (104)
T ss_dssp             HHHH
T ss_pred             hhHH
Confidence            6554

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=96.98  E-value=0.21  Score=50.30  Aligned_cols=317  Identities=8%  Similarity=-0.029  Sum_probs=151.2

Q ss_pred             HHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcC--CchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHH
Q 038522          176 YAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQG--FNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQ  253 (590)
Q Consensus       176 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~  253 (590)
                      ..+.|++..+..+...+.......|-..-..-...+  ..+++...+.+-.  |.+.....-..-+..+.+.+++.....
T Consensus        16 a~~~~~~~~~~~l~~~l~~~pL~~yl~y~~l~~~l~~~~~~ev~~Fl~~~~--~~p~~~~Lr~~~l~~l~~~~~w~~~l~   93 (618)
T 1qsa_A           16 AWDNRQMDVVEQMMPGLKDYPLYPYLEYRQITDDLMNQPAVTVTNFVRANP--TLPPARTLQSRFVNELARREDWRGLLA   93 (618)
T ss_dssp             HHHTTCHHHHHHHSGGGTTSTTHHHHHHHHHHHTGGGCCHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHCCCHHHHHHHHHhhcCCCcHHHHHHHHHHhCcccCCHHHHHHHHHHCC--CChhHHHHHHHHHHHHHhCCCHHHHHH
Confidence            345688888888877765422222221111111111  2333333333211  111111122333445555666665554


Q ss_pred             HHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc---cCCCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCC
Q 038522          254 IHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSM---LKTDIISCTALISGFARDDNHSKEAFDLFKDMILKKM  330 (590)
Q Consensus       254 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~  330 (590)
                      ++..     .+.+...-.....+....|+...|......+   ....+..+..++..+.+.|.                 
T Consensus        94 ~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~~p~~c~~l~~~~~~~g~-----------------  151 (618)
T 1qsa_A           94 FSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPNACDKLFSVWRASGK-----------------  151 (618)
T ss_dssp             HCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCTHHHHHHHHHHHTTC-----------------
T ss_pred             hccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCCC-----------------
Confidence            3332     2334444445566666777766666555554   12223334444444443332                 


Q ss_pred             CCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcch-hHHHHHHHHHHhcCChHHHHHHHHhcCCCCcch---HHHH
Q 038522          331 GIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDA-AVGNALIDMYAKSGEIADANRAFDEMGDKNVIS---WTSL  406 (590)
Q Consensus       331 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~l  406 (590)
                      ..+...+..+ ......|+...|..+...+     +++. .....++..+.   +...+....... .++...   +...
T Consensus       152 lt~~~~~~R~-~~al~~~~~~~a~~l~~~l-----~~~~~~~a~~~~al~~---~p~~~~~~~~~~-~~~~~~~~~~~~~  221 (618)
T 1qsa_A          152 QDPLAYLERI-RLAMKAGNTGLVTVLAGQM-----PADYQTIASAIISLAN---NPNTVLTFARTT-GATDFTRQMAAVA  221 (618)
T ss_dssp             SCHHHHHHHH-HHHHHTTCHHHHHHHHHTC-----CGGGHHHHHHHHHHHH---CGGGHHHHHHHS-CCCHHHHHHHHHH
T ss_pred             CCHHHHHHHH-HHHHHCCCHHHHHHHHHhC-----CHHHHHHHHHHHHHHh---ChHhHHHHHhcc-CCChhhHHHHHHH
Confidence            2111122111 2222333444444433221     1222 22233333332   233333333332 222221   1112


Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCcHHH----HHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHH
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVT----FLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFA  482 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~  482 (590)
                      +.-+.+ ++++.|...|....+.+ ..+...    ...+.......+...++...+......   .++.....-.+....
T Consensus       222 ~~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Al  296 (618)
T 1qsa_A          222 FASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMAL  296 (618)
T ss_dssp             HHHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHH
T ss_pred             HHHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHH
Confidence            223333 37889999998886543 223222    223333344445355666666665432   344444555556666


Q ss_pred             hcCChHHHHHHHHhcCCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522          483 RRGQLESAYNMIRQMNIKP--TASLWSAILGACSIYGNTSLGELAARNLFD  531 (590)
Q Consensus       483 ~~g~~~~A~~~~~~~~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  531 (590)
                      +.|+++.|...|+.+...+  .....--+.++....|+.++|..+|+.+.+
T Consensus       297 r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          297 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            7899999999999994332  222234455667788999999999999985

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.97  E-value=0.0057  Score=58.99  Aligned_cols=101  Identities=15%  Similarity=0.030  Sum_probs=72.2

Q ss_pred             HHHhhccCChHHHHHHHHHHHhhc--CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc---------CCCCC-HhH
Q 038522          442 LFACSHTGLTCEGWELFTDMINKY--RILPR----AEHFSCVVDLFARRGQLESAYNMIRQM---------NIKPT-ASL  505 (590)
Q Consensus       442 l~~~~~~~~~~~a~~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~---------~~~p~-~~~  505 (590)
                      +..+...|++++|..++++..+..  -+.|+    ..+++.+..+|...|++++|+.++++.         ...|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            344556778888888888776532  12222    456778888888888888888888766         23343 346


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhc-----CCCCCcchHHH
Q 038522          506 WSAILGACSIYGNTSLGELAARNLFD-----MEPEKSVNYVV  542 (590)
Q Consensus       506 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~~  542 (590)
                      ++.|...|...|++++|+..++++++     ++|++|.+-..
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~  415 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDL  415 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHH
Confidence            78888999999999999999999983     57777666443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=96.66  E-value=0.019  Score=41.47  Aligned_cols=68  Identities=12%  Similarity=0.006  Sum_probs=50.3

Q ss_pred             CCChhHHHHHHHHHHhcCC---hHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          468 LPRAEHFSCVVDLFARRGQ---LESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       468 ~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                      +.+...+..+..++...++   .++|..++++. ...| ++.....+...+...|++++|+..|+++++.+|.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            3456667777777765544   67888888877 4445 4566777778888888888888888888888886

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=96.58  E-value=0.0082  Score=47.37  Aligned_cols=82  Identities=13%  Similarity=0.148  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccC---ChHHHHHHHHHHHhhcCCCC--ChhHHHHHHHHHHhcCChHHHHH
Q 038522          418 EAIELYKKMKHEGMVPNDVTFLSLLFACSHTG---LTCEGWELFTDMINKYRILP--RAEHFSCVVDLFARRGQLESAYN  492 (590)
Q Consensus       418 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~  492 (590)
                      .+.+.|.+..+.| .++..+.-.+..++.+.+   +.++++.+++.+.+. . .|  +...+-.+.-+|.+.|++++|.+
T Consensus        16 ~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           16 KFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            3344444444433 244444444444555544   344555555555544 1 12  23334444445555555555555


Q ss_pred             HHHhc-CCCCC
Q 038522          493 MIRQM-NIKPT  502 (590)
Q Consensus       493 ~~~~~-~~~p~  502 (590)
                      .++.+ .+.|+
T Consensus        93 y~~~lL~ieP~  103 (152)
T 1pc2_A           93 YVRGLLQTEPQ  103 (152)
T ss_dssp             HHHHHHHHCTT
T ss_pred             HHHHHHhcCCC
Confidence            55555 44443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.40  E-value=0.025  Score=60.21  Aligned_cols=27  Identities=11%  Similarity=0.076  Sum_probs=13.7

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                      ...|..+.+.+.+.|+++.|.+.|.++
T Consensus       681 ~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          681 EMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            344555555555555555555555544

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.37  E-value=0.14  Score=54.27  Aligned_cols=155  Identities=15%  Similarity=0.067  Sum_probs=97.0

Q ss_pred             HHHHhcCChHHHHH-HHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCCh
Q 038522          104 SGYAQNGYDENALL-VFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWI  182 (590)
Q Consensus       104 ~~~~~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  182 (590)
                      ......+++++|.+ ++..     + |+......+++.+.+.|..+.|.++.+...            .-.......|++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~  668 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPN-----V-EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL  668 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred             hHHHHhCCHHHHHHHHHhc-----C-CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence            34455677777765 4421     1 112223556666677777777765552111            113345678999


Q ss_pred             HHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhC
Q 038522          183 EDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLG  262 (590)
Q Consensus       183 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  262 (590)
                      ++|.++.+.+.  +...|..+...+.+.|+++.|.+.|..+.+         |..+...+...++.+...++-+.....|
T Consensus       669 ~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~  737 (814)
T 3mkq_A          669 TLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG  737 (814)
T ss_dssp             HHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            99999887764  567899999999999999999999988753         3344444555667666666555555443


Q ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          263 LESSNKLTGSLIDVYAKYGSIRSAYQLYRSM  293 (590)
Q Consensus       263 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  293 (590)
                            -++.-..+|.+.|++++|.+++.++
T Consensus       738 ------~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          738 ------KFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             ------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             ------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence                  1233344566677777777776554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.36  E-value=0.02  Score=44.39  Aligned_cols=106  Identities=11%  Similarity=0.057  Sum_probs=61.0

Q ss_pred             cHHHHHHHHHHhhccCCh------HHHHHHHHHHHhhcCCCCCh-hHHHHHHHH------HHhcCChHHHHHHHHhc-CC
Q 038522          434 NDVTFLSLLFACSHTGLT------CEGWELFTDMINKYRILPRA-EHFSCVVDL------FARRGQLESAYNMIRQM-NI  499 (590)
Q Consensus       434 ~~~~~~~ll~~~~~~~~~------~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~-~~  499 (590)
                      |..+|...+....+.|++      ++.+++|++...  .++|+. ..+...|..      +...++.++|.++|+.+ .+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia--~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~   89 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIE--ALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN   89 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHH--HSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHH--cCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            455555555555555665      566666666665  344442 112222211      12346777777777777 11


Q ss_pred             -CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHH
Q 038522          500 -KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYV  541 (590)
Q Consensus       500 -~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  541 (590)
                       +-=...|-....--.++|+.+.|.+++.+++++.|.+...+.
T Consensus        90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le  132 (161)
T 4h7y_A           90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLE  132 (161)
T ss_dssp             CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHH
Confidence             111445555555556888888888888888888885544433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=96.23  E-value=0.018  Score=43.67  Aligned_cols=87  Identities=7%  Similarity=-0.091  Sum_probs=40.9

Q ss_pred             hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH---HHHHHHhc-CCC-C--CHhHHHHHHHHHHhcCCchHHH
Q 038522          451 TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES---AYNMIRQM-NIK-P--TASLWSAILGACSIYGNTSLGE  523 (590)
Q Consensus       451 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~-~~~-p--~~~~~~~l~~~~~~~~~~~~a~  523 (590)
                      ...+.+-|.+.... +. |+..+--.+..++.+..+...   ++.++++. ... |  .....-.+.-++.+.|+++.|+
T Consensus        17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            33444444444332 22 444444444555555544433   55555554 211 2  1223334444555556666666


Q ss_pred             HHHHHHhcCCCCCcch
Q 038522          524 LAARNLFDMEPEKSVN  539 (590)
Q Consensus       524 ~~~~~~~~~~p~~~~~  539 (590)
                      +.++.+++.+|.|..+
T Consensus        95 ~~~~~lL~~eP~n~QA  110 (126)
T 1nzn_A           95 KYVRGLLQTEPQNNQA  110 (126)
T ss_dssp             HHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHHhCCCCHHH
Confidence            6666666666644433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.21  E-value=0.018  Score=42.67  Aligned_cols=67  Identities=18%  Similarity=-0.042  Sum_probs=56.0

Q ss_pred             CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC-------CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          502 TASLWSAILGACSIYGNTSLGELAARNLFDME-------PEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      +......+...+...|+++.|...++.+++..       +..+.++..|+.+|.+.|++++|..+++++.+..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P   77 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP   77 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence            44456678888999999999999999998642       34567799999999999999999999999887543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.01  E-value=0.18  Score=40.85  Aligned_cols=129  Identities=13%  Similarity=0.054  Sum_probs=88.0

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ  486 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  486 (590)
                      .......|+++.|.++.+++      .+...|..|.......|+++-|.+.|.+...          +..+.-.|...|+
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGD   75 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTC
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCC
Confidence            34456788999999887765      4788899999999999999999998888763          3455566777788


Q ss_pred             hHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChHHHHHHHHHh
Q 038522          487 LESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY-TAAGAWDNARKTRKLM  563 (590)
Q Consensus       487 ~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~  563 (590)
                      .+.-.++-+.....-   -++.....+...|+++++.+++.+.-+.        . ++..+ ..-|-.+.|.++++++
T Consensus        76 ~e~L~kla~iA~~~g---~~n~af~~~l~lGdv~~~i~lL~~~~r~--------~-eA~~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           76 VNKLSKMQNIAQTRE---DFGSMLLNTFYNNSTKERSSIFAEGGSL--------P-LAYAVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHTCHHHHHHHHHHTTCH--------H-HHHHHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHCc---cHHHHHHHHHHcCCHHHHHHHHHHCCCh--------H-HHHHHHHHcCcHHHHHHHHHHh
Confidence            776665554441111   2444555566789999999988754331        1 22222 2357778888888776

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.76  E-value=0.62  Score=37.74  Aligned_cols=131  Identities=15%  Similarity=0.146  Sum_probs=89.6

Q ss_pred             HHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHH
Q 038522          376 IDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGW  455 (590)
Q Consensus       376 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  455 (590)
                      .+.....|+++.|.++.+++  .+...|..|.......|+++-|.+.|++...         +..+.-.|...|+.+...
T Consensus        12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~   80 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS   80 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence            34456779999999988877  4677899999999999999999999987653         233444456667777666


Q ss_pred             HHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHh
Q 038522          456 ELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLF  530 (590)
Q Consensus       456 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~  530 (590)
                      ++-+....+ |      -++.-...+.-.|+++++.++|.+.+.-|...      ......|-.+.|.++.+.+-
T Consensus        81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHhC
Confidence            655554433 2      13444455677899999999998886433211      12234567777887777653

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.76  E-value=0.045  Score=42.50  Aligned_cols=102  Identities=6%  Similarity=-0.039  Sum_probs=75.8

Q ss_pred             CChhHHHHHHHHHHhcCCh------HHHHHHHHhc--CCCCCHh-HHHHHHH------HHHhcCCchHHHHHHHHHhcCC
Q 038522          469 PRAEHFSCVVDLFARRGQL------ESAYNMIRQM--NIKPTAS-LWSAILG------ACSIYGNTSLGELAARNLFDME  533 (590)
Q Consensus       469 ~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~--~~~p~~~-~~~~l~~------~~~~~~~~~~a~~~~~~~~~~~  533 (590)
                      .|.++|-..+...-+.|++      ++..++|+++  .++|+.. .|...+.      .+...+++++|.++|+.++.+.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            3567777777777777887      7888888887  5666531 2222221      1234589999999999998775


Q ss_pred             CCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522          534 PEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK  570 (590)
Q Consensus       534 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  570 (590)
                      ..-+..|...+..-.++|+...|++++......+.+|
T Consensus        91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~  127 (161)
T 4h7y_A           91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP  127 (161)
T ss_dssp             TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred             HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence            5556778888899999999999999999988876544

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=95.69  E-value=0.059  Score=55.21  Aligned_cols=55  Identities=9%  Similarity=-0.005  Sum_probs=50.7

Q ss_pred             HHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhh
Q 038522          510 LGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLME  564 (590)
Q Consensus       510 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  564 (590)
                      ..-|...|+++.|+.+.++++...|.+-.+|..|+.+|...|+|+.|+-.++.+.
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            3446678999999999999999999999999999999999999999999999884

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.52  E-value=0.033  Score=49.18  Aligned_cols=103  Identities=13%  Similarity=0.142  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHhhcCCCCC---hhHHHHHHHHHHhc-----CChHHHHHHHHhc-CCCCC--HhHHHHHHHHHHh-cCCc
Q 038522          452 CEGWELFTDMINKYRILPR---AEHFSCVVDLFARR-----GQLESAYNMIRQM-NIKPT--ASLWSAILGACSI-YGNT  519 (590)
Q Consensus       452 ~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~-~~~p~--~~~~~~l~~~~~~-~~~~  519 (590)
                      ..|...+++..+   +.|+   ...|..+...|...     |+.++|.+.|++. .+.|+  ..++......++. .|+.
T Consensus       180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            456666666664   3666   45677777777774     8888888888887 55663  5666666776666 4888


Q ss_pred             hHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522          520 SLGELAARNLFDMEPEK-SVNYVVLSNIYTAAGAWDNARKTRKLM  563 (590)
Q Consensus       520 ~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (590)
                      +.+.+.+++++...|.. |.  ..    +...++-++|..++.++
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~--~~----lan~~~q~eA~~LL~~~  295 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPH--NK----LLVILSQKRARWLKAHV  295 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSS--CH----HHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHcCCCCCCCC--hh----HHHHHHHHHHHHHHHHh
Confidence            88899999988887742 22  12    23334456666666654

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=95.50  E-value=0.15  Score=38.66  Aligned_cols=68  Identities=10%  Similarity=-0.097  Sum_probs=39.0

Q ss_pred             CCHhHHHHHHHHHHhcCCchH---HHHHHHHHhcCC-C-CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          501 PTASLWSAILGACSIYGNTSL---GELAARNLFDME-P-EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       501 p~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      |+..+--.+.+++.+.++...   ++.+++.+.+.+ | ......+.|+.++.+.|++++|++.++.+.+..+
T Consensus        33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP  105 (126)
T 1nzn_A           33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEP  105 (126)
T ss_dssp             CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            555555555555555554443   666666666554 4 3445556666666666666666666666655443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=95.16  E-value=3.8  Score=43.05  Aligned_cols=265  Identities=10%  Similarity=0.010  Sum_probs=132.0

Q ss_pred             HhccCCChhHHHHHHHHHHHhC--CCCChhHHHHHHHHHHhcCChHHHHHHHHhccC-CC----------ccchHHHHHH
Q 038522          241 ASVGGIELMKISQIHDLIIKLG--LESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK-TD----------IISCTALISG  307 (590)
Q Consensus       241 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~----------~~~~~~l~~~  307 (590)
                      +....|+.+++..++......+  -.+....-..+.-+....|..+++..++..... ++          ...-..+.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            3556677777777666554321  111222333444455666666667766665432 12          1111222233


Q ss_pred             HHhcCCChHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCCh
Q 038522          308 FARDDNHSKEAFDLFKDMILKKMGIDDVILC--LMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEI  385 (590)
Q Consensus       308 ~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~--~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  385 (590)
                      +.-.|..-+++.+.+..++...- +......  .+-..+.-.|+-+....++..+.+.. .-+..-...+.-++.-.|+.
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~  540 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQ  540 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCG
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCCh
Confidence            33333323677777777765321 1111111  12222345566666677776665532 11222222222333356777


Q ss_pred             HHHHHHHHhcCC-CCcc-hHH---HHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHH
Q 038522          386 ADANRAFDEMGD-KNVI-SWT---SLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTD  460 (590)
Q Consensus       386 ~~A~~~~~~~~~-~~~~-~~~---~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  460 (590)
                      +.+..+++.+.. .++. -|.   ++.-+|+..|+......+++.+.+. ...+......+.-++...|+.+.+.++++.
T Consensus       541 e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~  619 (963)
T 4ady_A          541 ELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQL  619 (963)
T ss_dssp             GGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTT
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHH
Confidence            777777666552 3332 232   2344566677776666688877763 222333333333344456666666777765


Q ss_pred             HHhhcCCCCChhHHHHHHHHHHhcCCh-HHHHHHHHhcCCCCCHhHHHHHH
Q 038522          461 MINKYRILPRAEHFSCVVDLFARRGQL-ESAYNMIRQMNIKPTASLWSAIL  510 (590)
Q Consensus       461 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~p~~~~~~~l~  510 (590)
                      +.+.  ..|.+..-..+.-+....|.. .+|.+.+..+...+|..+-...+
T Consensus       620 L~~~--~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d~~Vrq~Ai  668 (963)
T 4ady_A          620 LSKS--HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPVDFVRQAAM  668 (963)
T ss_dssp             GGGC--SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSSHHHHHHHH
T ss_pred             HHhc--CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCCHHHHHHHH
Confidence            5542  234444444444444555554 57777888774456655543333

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.49  E-value=1.2  Score=33.93  Aligned_cols=64  Identities=9%  Similarity=0.039  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCC
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRI  467 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  467 (590)
                      .....+..+...|+-++-.+++.++.. +.+|++.....+..+|.+.|+..++.+++.+.-++ |+
T Consensus        93 ~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k-G~  156 (172)
T 1wy6_A           93 HVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKK-GE  156 (172)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TC
T ss_pred             HHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh-hh
Confidence            344556666667777777777776543 24666777777777777777777777777777665 54

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=94.45  E-value=0.19  Score=38.74  Aligned_cols=72  Identities=8%  Similarity=0.049  Sum_probs=44.6

Q ss_pred             CCChhHHHHHHHHHHhcCCh---HHHHHHHHhc-CCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522          468 LPRAEHFSCVVDLFARRGQL---ESAYNMIRQM-NIKP--TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN  539 (590)
Q Consensus       468 ~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  539 (590)
                      .|+..+--.+..++.+..+.   .+++.++++. ...|  .....-.+.-++.+.|+++.|++..+.+++.+|+|..+
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA  113 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  113 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence            45555555566666666543   3566666666 2233  23344555667777788888888888887777765443

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.30  E-value=0.22  Score=39.65  Aligned_cols=125  Identities=13%  Similarity=0.068  Sum_probs=64.3

Q ss_pred             cCCCCcHH--HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCCh-------hHHHHHHHHHHhcCChHHHHHHHHhc--
Q 038522          429 EGMVPNDV--TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRA-------EHFSCVVDLFARRGQLESAYNMIRQM--  497 (590)
Q Consensus       429 ~g~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~--  497 (590)
                      .|+.|...  ++..-+..+...|.++.|+-+.+.+....+..|+.       .++..+.+++...|++.+|...|++.  
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            45556433  33344556667777887777776655432333332       24556667777777777777777764  


Q ss_pred             --CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          498 --NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       498 --~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                        ..-+ +..+...+. .   ......       -... +.+...-+-++.||.+.|++++|+.+++.+..
T Consensus        92 ~~k~l~k~~s~~~~~~-~---~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~  150 (167)
T 3ffl_A           92 QKKALSKTSKVRPSTG-N---SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPS  150 (167)
T ss_dssp             HHHCC-------------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred             HHHHHhcCCCcccccc-c---cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence              1111 111110110 0   000000       0111 22445677799999999999999999997644

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=94.19  E-value=0.096  Score=39.80  Aligned_cols=71  Identities=8%  Similarity=0.056  Sum_probs=40.4

Q ss_pred             CChhHHHHHHHHHHhcCCh---HHHHHHHHhc-CCCC--CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch
Q 038522          469 PRAEHFSCVVDLFARRGQL---ESAYNMIRQM-NIKP--TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN  539 (590)
Q Consensus       469 ~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~-~~~p--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~  539 (590)
                      |+..+--.+..++.+..+.   .+++.++++. ...|  ....+-.+.-++.+.|+++.|++..+.+++.+|+|..+
T Consensus        38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            4444444455555555433   3566666655 2223  23445555566677777777777777777777755444

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.35  E-value=4.4  Score=36.52  Aligned_cols=112  Identities=9%  Similarity=-0.015  Sum_probs=75.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHH----HHHHHHcCCCCChhhHHHHHHHhcc
Q 038522          169 KSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWL----FRSMMRQGMKPDCFTLGSILRASVG  244 (590)
Q Consensus       169 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~~~~~  244 (590)
                      |.++..-|.+.+++++|.+++..           -...+.+.|+...|.++    ++...+.+++++......++..+..
T Consensus        36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~  104 (312)
T 2wpv_A           36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE  104 (312)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            34455667888888888887644           23456667777666664    4555667888888888888877765


Q ss_pred             CCChh-HHHHHHHHHHH----hC--CCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 038522          245 GIELM-KISQIHDLIIK----LG--LESSNKLTGSLIDVYAKYGSIRSAYQLYR  291 (590)
Q Consensus       245 ~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  291 (590)
                      ...-+ .-.++++.+++    .|  ..-++.....+...|.+.|++.+|+.-|-
T Consensus       105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i  158 (312)
T 2wpv_A          105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM  158 (312)
T ss_dssp             CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence            33211 22444444443    33  22466788889999999999999988765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.86  E-value=11  Score=39.75  Aligned_cols=253  Identities=11%  Similarity=-0.003  Sum_probs=131.6

Q ss_pred             HHHHHhcCChHHHHHHHHhccCC----Ccc--chHHHHHHHHhcCCChHHHHHHHHHHHHcCC--CCC---HHHH--HHH
Q 038522          274 IDVYAKYGSIRSAYQLYRSMLKT----DII--SCTALISGFARDDNHSKEAFDLFKDMILKKM--GID---DVIL--CLM  340 (590)
Q Consensus       274 ~~~~~~~g~~~~a~~~~~~~~~~----~~~--~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~--~p~---~~~~--~~l  340 (590)
                      .-+....|+.++++.+++.....    +..  .-..+.-+....|. .+++..++...+...-  .-+   ...-  ..+
T Consensus       381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~-~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL  459 (963)
T 4ady_A          381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF-GRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL  459 (963)
T ss_dssp             HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT-THHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH
T ss_pred             HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHcCccccccccccHHHHHHHHH
Confidence            33466788889999999887642    211  12223344555665 5578888887665321  111   1111  111


Q ss_pred             HHHHhchhh-hHhHHHHHHHHHHhCCCcchh--HHHHHHHHHHhcCChHHHHHHHHhcCC-CCcc--hHHHHHHHHHhcC
Q 038522          341 LNICANVAS-LNLGRQIHAFAFKYQSSYDAA--VGNALIDMYAKSGEIADANRAFDEMGD-KNVI--SWTSLIAGYAKHG  414 (590)
Q Consensus       341 l~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~--~~~~l~~~~~~~~  414 (590)
                      --+....|. -+.+...+..+..... +...  .-.++...+.-.|+.+....++..+.+ .+..  -.-.+.-++...|
T Consensus       460 GLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g  538 (963)
T 4ady_A          460 GIGLAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYG  538 (963)
T ss_dssp             HHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCC
Confidence            112222222 1233444444333221 1111  112333344566777777777766542 2222  2333444555788


Q ss_pred             CchHHHHHHHHHHHcCCCCcHHHH--HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHH
Q 038522          415 YGHEAIELYKKMKHEGMVPNDVTF--LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYN  492 (590)
Q Consensus       415 ~~~~a~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  492 (590)
                      +.+.+..+++.+... ..|....-  ..+.-+|+..|+.....+++..+.+.  ...++.-...+.-++...|+.+.+.+
T Consensus       539 ~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~r  615 (963)
T 4ady_A          539 RQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPR  615 (963)
T ss_dssp             CGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred             ChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHH
Confidence            999998888888763 23322222  23344677888987777788888763  22233333333334455777777777


Q ss_pred             HHHhcCCCCCHhHH--HHHHHHHHhcCCc-hHHHHHHHHHhc
Q 038522          493 MIRQMNIKPTASLW--SAILGACSIYGNT-SLGELAARNLFD  531 (590)
Q Consensus       493 ~~~~~~~~p~~~~~--~~l~~~~~~~~~~-~~a~~~~~~~~~  531 (590)
                      +++.+....|+.+-  ..+..+....|+. ..+...+..+..
T Consensus       616 lv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          616 IVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             HTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            77766222333333  3333333344444 567777777763

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.60  E-value=0.21  Score=47.39  Aligned_cols=58  Identities=16%  Similarity=0.028  Sum_probs=36.4

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          508 AILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       508 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .++.++...|+++.++..++.++..+|-+...|..|..+|.+.|+..+|++.|+.+.+
T Consensus       176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444555666666666666666666666666666666666666666666666666543

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.13  E-value=3.2  Score=39.98  Aligned_cols=91  Identities=11%  Similarity=0.190  Sum_probs=60.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhc-----CCCCC---HhHHHHHHHHHHhcCCchHHHHHHHHHhc---CCCCCc----ch
Q 038522          475 SCVVDLFARRGQLESAYNMIRQM-----NIKPT---ASLWSAILGACSIYGNTSLGELAARNLFD---MEPEKS----VN  539 (590)
Q Consensus       475 ~~l~~~~~~~g~~~~A~~~~~~~-----~~~p~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~----~~  539 (590)
                      ..|...|...|++.+|.+++..+     +..+.   ...+...++.|...+++.+|..+++++..   ..|.++    ..
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            45667777888888888888776     22222   23455566777888888888888887641   112122    34


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          540 YVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       540 ~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +...+..+...++|.+|-+.|.++.+
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            56677778888888888877776654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.59  E-value=0.84  Score=36.33  Aligned_cols=63  Identities=10%  Similarity=-0.039  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCc-------HHHHHHHHHHhhccCChHHHHHHHHHHHhh
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEG-MVPN-------DVTFLSLLFACSHTGLTCEGWELFTDMINK  464 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g-~~p~-------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  464 (590)
                      .+-.-+..+...+.++.|.-+.+.+.... ..|+       ..++..+.+++...+++..|...|++....
T Consensus        22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~   92 (167)
T 3ffl_A           22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ   92 (167)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence            44455777888999999998888765421 2333       235677788999999999999999997543

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=90.18  E-value=3.7  Score=29.09  Aligned_cols=88  Identities=14%  Similarity=0.051  Sum_probs=65.6

Q ss_pred             cchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHH
Q 038522           44 KAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAML  123 (590)
Q Consensus        44 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  123 (590)
                      ...++|..|-+.+...+.  ...+-..-+..+..+|++++|..+.+.+.-||...|-+|-.  .+.|-.+++...+.++.
T Consensus        20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la   95 (115)
T 2uwj_G           20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG   95 (115)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence            467889999888887663  33333334456778999999999999999999999987766  57788888888887887


Q ss_pred             HcCCCCCHhhHHH
Q 038522          124 RSGVRANQFTYSS  136 (590)
Q Consensus       124 ~~~~~p~~~~~~~  136 (590)
                      .+| .|....|..
T Consensus        96 ~sg-~p~~q~Fa~  107 (115)
T 2uwj_G           96 GSS-DPALADFAA  107 (115)
T ss_dssp             TCS-SHHHHHHHH
T ss_pred             hCC-CHHHHHHHH
Confidence            765 455555543

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=90.05  E-value=4.7  Score=31.13  Aligned_cols=69  Identities=10%  Similarity=0.063  Sum_probs=29.9

Q ss_pred             CcHHHHHHHHHHhhccCC---hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCC
Q 038522          433 PNDVTFLSLLFACSHTGL---TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPT  502 (590)
Q Consensus       433 p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~  502 (590)
                      |+..+--.+..++.+..+   ..+++.+++.+.+. +-.-.....-.|.-++.+.|++++|.++.+.+ ...|+
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~  109 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERN  109 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCC
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCC
Confidence            444443334444444332   23444555555443 11112233334444555555555555555554 44443

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=89.90  E-value=11  Score=33.99  Aligned_cols=166  Identities=12%  Similarity=0.102  Sum_probs=89.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHH----HHHHHHHcCCCCCHHHHHHHHHHHhch
Q 038522          272 SLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFD----LFKDMILKKMGIDDVILCLMLNICANV  347 (590)
Q Consensus       272 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~----~~~~~~~~~~~p~~~~~~~ll~~~~~~  347 (590)
                      ++..-|.+.+++++|.+++..-           ...+.+.++ ...|-+    +++-..+.+++++......++..+...
T Consensus        38 tl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q-~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~  105 (312)
T 2wpv_A           38 TIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQ-GGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAEL  105 (312)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTC-HHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCC-cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            3444466677777777765432           223334444 444433    344444556777777777666665442


Q ss_pred             hhhH-hHHHHHHHHH----HhC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhc---CCch
Q 038522          348 ASLN-LGRQIHAFAF----KYQ--SSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKH---GYGH  417 (590)
Q Consensus       348 ~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~  417 (590)
                      ..-+ .-..+.+.++    +.|  ..-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+...   |...
T Consensus       106 p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~~~  185 (312)
T 2wpv_A          106 DPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIEDS  185 (312)
T ss_dssp             CTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred             CCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCCcc
Confidence            2111 1123333332    232  2347888899999999999999999887633222333443333322222   2111


Q ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhh
Q 038522          418 EAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINK  464 (590)
Q Consensus       418 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~  464 (590)
                      +              ++...-..++ .|.-.|+...|..+++...++
T Consensus       186 e--------------~dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~  217 (312)
T 2wpv_A          186 T--------------VAEFFSRLVF-NYLFISNISFAHESKDIFLER  217 (312)
T ss_dssp             H--------------HHHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred             h--------------HHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence            1              1122222233 355678899999998887654

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=89.85  E-value=4  Score=28.98  Aligned_cols=89  Identities=15%  Similarity=0.152  Sum_probs=65.1

Q ss_pred             ccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHH
Q 038522           43 KKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAM  122 (590)
Q Consensus        43 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  122 (590)
                      ..+.++|..|-+.+...+.  ...+-..-+..+..+|++++|..+.+.+.-||...|-+|-.  .+.|-.+++...+.++
T Consensus        20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l   95 (116)
T 2p58_C           20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL   95 (116)
T ss_dssp             TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence            3467889999888887663  33333334456778999999999999999999999988766  4677778888777777


Q ss_pred             HHcCCCCCHhhHHH
Q 038522          123 LRSGVRANQFTYSS  136 (590)
Q Consensus       123 ~~~~~~p~~~~~~~  136 (590)
                      ..+| .|....|..
T Consensus        96 a~sg-~p~~q~Fa~  108 (116)
T 2p58_C           96 ARSQ-DPRIQTFVN  108 (116)
T ss_dssp             TTCC-CHHHHHHHH
T ss_pred             HhCC-CHHHHHHHH
Confidence            7665 355555543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=89.82  E-value=11  Score=34.13  Aligned_cols=113  Identities=15%  Similarity=0.070  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHH----HHHHHcCCCCChhhHHHHHHHhc
Q 038522          168 VKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLF----RSMMRQGMKPDCFTLGSILRASV  243 (590)
Q Consensus       168 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~  243 (590)
                      +|.++..-|.+.+++++|.+++..           -...+.+.|+...+.++-    +-+.+.++++|......++..+.
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~  105 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR  105 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            344556668888888888887643           234566677776665554    55567788899888888888776


Q ss_pred             cCCChh-HHHHHHHHHHH----hC--CCCChhHHHHHHHHHHhcCChHHHHHHHH
Q 038522          244 GGIELM-KISQIHDLIIK----LG--LESSNKLTGSLIDVYAKYGSIRSAYQLYR  291 (590)
Q Consensus       244 ~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~  291 (590)
                      ....-+ .-..+.+.+++    .|  ..-++.....+...|.+.+++.+|+.-|-
T Consensus       106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i  160 (336)
T 3lpz_A          106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV  160 (336)
T ss_dssp             TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred             hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            655322 22334444443    33  33466777888889999999999988773

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.45  E-value=3.1  Score=29.68  Aligned_cols=63  Identities=14%  Similarity=0.119  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522          415 YGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVD  479 (590)
Q Consensus       415 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  479 (590)
                      +.-++.+-++.+....+.|++......+.+|.+.+++..|..+++.++.+-+.  ...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence            34456777777888888999999999999999999999999999999876333  3456776664

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.76  E-value=20  Score=34.41  Aligned_cols=185  Identities=10%  Similarity=0.080  Sum_probs=117.5

Q ss_pred             CCChHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHh-CCCcch--hHHHHHHHHHHhcC
Q 038522          312 DNHSKEAFDLFKDMILK-----KMGIDDVILCLMLNICANVASLNLGRQIHAFAFKY-QSSYDA--AVGNALIDMYAKSG  383 (590)
Q Consensus       312 ~~~~~~a~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~l~~~~~~~~  383 (590)
                      ++ +++|++.+..+.+.     ...........++..|...++++...+.+..+.+. |..+..  .+.+.++.......
T Consensus        30 ~~-~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~  108 (445)
T 4b4t_P           30 ND-CNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSK  108 (445)
T ss_dssp             HH-HHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHC
T ss_pred             CC-HHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCC
Confidence            56 88888887766543     23445677888999999999999988877766543 332221  11122233333333


Q ss_pred             ChH--HHHHHHHhcCC---CCc-------chHHHHHHHHHhcCCchHHHHHHHHHHHc--CCCCc---HHHHHHHHHHhh
Q 038522          384 EIA--DANRAFDEMGD---KNV-------ISWTSLIAGYAKHGYGHEAIELYKKMKHE--GMVPN---DVTFLSLLFACS  446 (590)
Q Consensus       384 ~~~--~A~~~~~~~~~---~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--g~~p~---~~~~~~ll~~~~  446 (590)
                      ..+  .-..+.+.+..   .-.       .....|...+...|++.+|..++.++...  |..+.   ...+...++.|.
T Consensus       109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l  188 (445)
T 4b4t_P          109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI  188 (445)
T ss_dssp             TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            322  23334444332   111       12355778888999999999999998642  32222   245666778889


Q ss_pred             ccCChHHHHHHHHHHHhhc-CCCCC----hhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          447 HTGLTCEGWELFTDMINKY-RILPR----AEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       447 ~~~~~~~a~~~~~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                      ..+++..|..++.++..+. ...++    ...+...+..+...+++.+|-+.|.+.
T Consensus       189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~  244 (445)
T 4b4t_P          189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI  244 (445)
T ss_dssp             HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            9999999999999875421 12222    245667777888889999998887665

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=87.14  E-value=20  Score=33.63  Aligned_cols=23  Identities=30%  Similarity=0.278  Sum_probs=11.6

Q ss_pred             HHHHHHhcCCchHHHHHHHHHHH
Q 038522          406 LIAGYAKHGYGHEAIELYKKMKH  428 (590)
Q Consensus       406 l~~~~~~~~~~~~a~~~~~~m~~  428 (590)
                      ++..|...|++.+|.+++.++.+
T Consensus       105 L~~l~~~~~~y~~a~~~i~~l~~  127 (394)
T 3txn_A          105 LIALYFDTALYTEALALGAQLLR  127 (394)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            44445555555555555554443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=86.97  E-value=6.5  Score=27.90  Aligned_cols=86  Identities=9%  Similarity=0.031  Sum_probs=59.7

Q ss_pred             chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522          146 WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR  225 (590)
Q Consensus       146 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  225 (590)
                      ..++|..+-+.+...+.  ...+-..-+..+...|++++|..+.+...-||...|-+|-.  .+.|..+.+..-+..+..
T Consensus        21 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   96 (115)
T 2uwj_G           21 CHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGG   96 (115)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45666666666666543  33344444567788999999999999998889888877654  477887888877777776


Q ss_pred             cCCCCChhhHH
Q 038522          226 QGMKPDCFTLG  236 (590)
Q Consensus       226 ~~~~p~~~~~~  236 (590)
                      .| .|....|.
T Consensus        97 sg-~p~~q~Fa  106 (115)
T 2uwj_G           97 SS-DPALADFA  106 (115)
T ss_dssp             CS-SHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            66 44444443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=86.82  E-value=18  Score=32.84  Aligned_cols=165  Identities=11%  Similarity=0.057  Sum_probs=88.2

Q ss_pred             HHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHH----HHHHHHHHcCCCCCHHHHHHHHHHHhch
Q 038522          272 SLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAF----DLFKDMILKKMGIDDVILCLMLNICANV  347 (590)
Q Consensus       272 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~----~~~~~~~~~~~~p~~~~~~~ll~~~~~~  347 (590)
                      ++..-|.+.+++++|.+++-.-           ...+.+.++ ...+-    -+++-..+.++++|......++..+...
T Consensus        40 Ti~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q-~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~  107 (336)
T 3lpz_A           40 LVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQ-GGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF  107 (336)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTC-HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCC-cchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence            3444466677777777665332           122333344 33333    3334445556777777766666666544


Q ss_pred             hhhH-hHHHHHHHH----HHhC--CCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHH
Q 038522          348 ASLN-LGRQIHAFA----FKYQ--SSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAI  420 (590)
Q Consensus       348 ~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  420 (590)
                      ..-+ .-..+.+.+    .+.|  ..-++.....+...|.+.+++.+|...|-.-.++....+..++.-+...+...   
T Consensus       108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~---  184 (336)
T 3lpz_A          108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH---  184 (336)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG---
T ss_pred             CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc---
Confidence            3211 112222222    2233  34477888899999999999999999884322223345544443333322211   


Q ss_pred             HHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHh
Q 038522          421 ELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMIN  463 (590)
Q Consensus       421 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  463 (590)
                                 .++...-..++ -|...++...|..+++...+
T Consensus       185 -----------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          185 -----------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             -----------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred             -----------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence                       12223333333 35556788888887776664

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=86.72  E-value=4  Score=41.98  Aligned_cols=51  Identities=12%  Similarity=0.006  Sum_probs=32.3

Q ss_pred             hhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhcC
Q 038522          445 CSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQMN  498 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~  498 (590)
                      |...|+++-|+++-++....   .|+ ..+|..|..+|...|+++.|+-.+..++
T Consensus       347 Ll~K~~~elAL~~Ak~AV~~---aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          347 LLNRGDYELALGVSNTSTEL---ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HhccCcHHHHHHHHHHHHhc---CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            44566666666666666643   443 5566666677777777777766666664

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.65  E-value=3.5  Score=45.39  Aligned_cols=62  Identities=8%  Similarity=-0.125  Sum_probs=39.7

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhcCCC-CCc----chHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          506 WSAILGACSIYGNTSLGELAARNLFDMEP-EKS----VNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      |..++..+.+.+.++.+.++.+.+++..+ ++.    ..|..+...+...|++++|-..+-.+....
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~  968 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP  968 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH
Confidence            45566666677777777777777775433 222    145666777777777777777776555433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.64  E-value=1.3  Score=38.49  Aligned_cols=55  Identities=22%  Similarity=0.271  Sum_probs=34.2

Q ss_pred             HHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          480 LFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       480 ~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      .+.+.|++++|++....- ...| |...-..++..++-.|++++|.+-++.+.+++|
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p   62 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP   62 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence            345666677776666554 3333 444455566666677777777777777777776

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=86.45  E-value=7  Score=27.78  Aligned_cols=86  Identities=14%  Similarity=0.071  Sum_probs=58.6

Q ss_pred             chhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522          146 WLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMR  225 (590)
Q Consensus       146 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  225 (590)
                      ..++|..+-+.+...+.  ...+-..-+..+...|++++|..+.+...-||...|-+|-.  .+.|..+.+..-+..+..
T Consensus        22 ~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~   97 (116)
T 2p58_C           22 YHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLAR   97 (116)
T ss_dssp             CHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHh
Confidence            45666666666666543  33344444567788899999999999998888888877654  366777777777777776


Q ss_pred             cCCCCChhhHH
Q 038522          226 QGMKPDCFTLG  236 (590)
Q Consensus       226 ~~~~p~~~~~~  236 (590)
                      .| .|....|.
T Consensus        98 sg-~p~~q~Fa  107 (116)
T 2p58_C           98 SQ-DPRIQTFV  107 (116)
T ss_dssp             CC-CHHHHHHH
T ss_pred             CC-CHHHHHHH
Confidence            65 44444443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.24  E-value=19  Score=39.70  Aligned_cols=186  Identities=11%  Similarity=0.064  Sum_probs=115.9

Q ss_pred             HHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC----C---------------
Q 038522          339 LMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK----N---------------  399 (590)
Q Consensus       339 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~---------------  399 (590)
                      .++..+...+..+.+..+....     +.++...-.+..+|...|++++|...|.+....    +               
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~  891 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK  891 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred             HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence            4555566666666655543321     224444456778889999999999999887420    0               


Q ss_pred             -------cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcH----HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCC
Q 038522          400 -------VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPND----VTFLSLLFACSHTGLTCEGWELFTDMINKYRIL  468 (590)
Q Consensus       400 -------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  468 (590)
                             ..-|..++..+.+.+.++.+.++-+..++..-.-+.    ..|..+..++...|++++|...+-.+...   .
T Consensus       892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~---~  968 (1139)
T 4fhn_B          892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTT---P  968 (1139)
T ss_dssp             TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHS---S
T ss_pred             ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCH---H
Confidence                   012567788888899999999988877764322221    24777888999999999999888777643   2


Q ss_pred             CChhHHHHHHHHHHhcCChHH------------HHHHHHhc-----CCCCCHhHHHHHHHHHHhcCCch-HHHHHHHHHh
Q 038522          469 PRAEHFSCVVDLFARRGQLES------------AYNMIRQM-----NIKPTASLWSAILGACSIYGNTS-LGELAARNLF  530 (590)
Q Consensus       469 ~~~~~~~~l~~~~~~~g~~~~------------A~~~~~~~-----~~~p~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~  530 (590)
                      .-...+..|+..++..|..+.            ..+++..-     .....+.-|..|-.-+...|++. .|...|+.+.
T Consensus       969 ~r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B          969 LKKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp             SCHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence            345677778777776655443            33333221     11111223444444445666664 4566777776


Q ss_pred             cC
Q 038522          531 DM  532 (590)
Q Consensus       531 ~~  532 (590)
                      ++
T Consensus      1049 RL 1050 (1139)
T 4fhn_B         1049 RY 1050 (1139)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=85.88  E-value=7.8  Score=36.51  Aligned_cols=57  Identities=9%  Similarity=-0.000  Sum_probs=34.8

Q ss_pred             HHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          439 LSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       439 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                      ..++..+...|+++++...+..+...  .+.+...+..++.+|.+.|+..+|++.|+++
T Consensus       175 ~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~  231 (388)
T 2ff4_A          175 TAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRV  231 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34445555666777776666666543  1234556666777777777777776666554

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=85.68  E-value=7.4  Score=32.13  Aligned_cols=50  Identities=6%  Similarity=-0.057  Sum_probs=27.1

Q ss_pred             cCChHHHHHHHHhc---CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCC
Q 038522          484 RGQLESAYNMIRQM---NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDME  533 (590)
Q Consensus       484 ~g~~~~A~~~~~~~---~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  533 (590)
                      ++...++.++|.-|   ++-- -...|......+-..|++.+|.++|+..++..
T Consensus        92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~  145 (202)
T 3esl_A           92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN  145 (202)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            33345555665555   2222 23345555555556666666666666666543

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=85.43  E-value=3.7  Score=35.76  Aligned_cols=51  Identities=22%  Similarity=0.234  Sum_probs=25.2

Q ss_pred             hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                      ..+.|+++++++....-.+.  -+-|...-..|+..++-.|++++|.+-++..
T Consensus         7 ll~~g~L~~al~~~~~~VR~--~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~   57 (273)
T 1zbp_A            7 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQS   57 (273)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            34445555555555444432  2234444445555555555555555555444

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=85.37  E-value=10  Score=28.79  Aligned_cols=76  Identities=11%  Similarity=0.057  Sum_probs=52.0

Q ss_pred             CCCCcHHHHHHHHHHhhccCC---hHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhH
Q 038522          430 GMVPNDVTFLSLLFACSHTGL---TCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASL  505 (590)
Q Consensus       430 g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~  505 (590)
                      +-.|+..|--.+..++.+..+   ..+++.+++++.+. +-.-....+-.|.-++.+.|++++|.+..+.+ ...|+..-
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~Q  113 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  113 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHH
Confidence            335666665556666666554   45688888888865 31113556667778889999999999999888 77776543


Q ss_pred             H
Q 038522          506 W  506 (590)
Q Consensus       506 ~  506 (590)
                      .
T Consensus       114 A  114 (134)
T 3o48_A          114 V  114 (134)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=82.56  E-value=7.5  Score=29.50  Aligned_cols=61  Identities=16%  Similarity=0.172  Sum_probs=49.2

Q ss_pred             hHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522          417 HEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVD  479 (590)
Q Consensus       417 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  479 (590)
                      -+..+-++.+....+.|++......+.+|-+.+++..|..+++-++.+-  .+...+|..+++
T Consensus        70 wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~lq  130 (152)
T 2y69_E           70 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred             HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHHH
Confidence            3556667777778889999999999999999999999999999998863  334556777764

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=81.76  E-value=14  Score=28.95  Aligned_cols=50  Identities=12%  Similarity=0.016  Sum_probs=34.7

Q ss_pred             HHHHHHHHHh--cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCcc
Q 038522          521 LGELAARNLF--DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLRK  570 (590)
Q Consensus       521 ~a~~~~~~~~--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  570 (590)
                      .+..+|+.+.  +++-..+..|...+..+...|++++|.++++.-.+++-+|
T Consensus        83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P  134 (152)
T 4a1g_A           83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP  134 (152)
T ss_dssp             CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            3667777766  3445566677777777888888888888887766665544

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=80.38  E-value=24  Score=29.36  Aligned_cols=60  Identities=7%  Similarity=-0.001  Sum_probs=22.9

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHHHHHHHHH
Q 038522          265 SSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAFDLFKDMI  326 (590)
Q Consensus       265 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~  326 (590)
                      ++..+-...+.++.+.|+.+....+...+..++...-...+.++.+.+.  .++...+..+.
T Consensus       124 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--~~~~~~L~~~l  183 (211)
T 3ltm_A          124 EDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG--ERVRAAMEKLA  183 (211)
T ss_dssp             SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--HHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--hhHHHHHHHHH
Confidence            3333444444444444443322222222233333333333444444333  33444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	590
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.92
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.91
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.63
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.55
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.18
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.14
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.11
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.1
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.07
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.04
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.04
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.03
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.03
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.99
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.84
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.82
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.75
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.74
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.73
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.72
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.7
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.63
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.62
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.51
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.5
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.45
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.42
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.42
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.35
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.34
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.33
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.3
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.27
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.23
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.22
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.18
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.17
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.13
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.12
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.96
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.95
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.88
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.87
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.86
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.84
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.83
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.79
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.66
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.51
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.48
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.44
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.37
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.35
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.98
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	96.91
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.38
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.94
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.99
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	94.5
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.05
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	93.24
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	87.95
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	84.48

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-21  Score=188.79  Aligned_cols=373  Identities=12%  Similarity=0.048  Sum_probs=250.8

Q ss_pred             HHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCC--C-CcchHHHHHHHHHhcCCchH
Q 038522          139 RACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIER--K-DVVSWNAMIGGLAMQGFNDD  215 (590)
Q Consensus       139 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~  215 (590)
                      ..+.+.|++++|.+.++.+.+.. +.+..++..+..+|.+.|++++|...|+++.+  | +..+|..+..++...|++++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence            34556677777777777766653 23455666666666666666666666666543  2 34456666666666666666


Q ss_pred             HHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccC
Q 038522          216 SFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLK  295 (590)
Q Consensus       216 a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  295 (590)
                      |++.+....... +.+..............+................                                .
T Consensus        86 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------~  132 (388)
T d1w3ba_          86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--------------------------------P  132 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--------------------------------T
T ss_pred             cccccccccccc-cccccccccccccccccccccccccccccccccc--------------------------------c
Confidence            666666665543 1122222222222222222222222222222221                                1


Q ss_pred             CCccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHH
Q 038522          296 TDIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNAL  375 (590)
Q Consensus       296 ~~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  375 (590)
                      ................+. ...+...+....... +.+...+..+...+...++.+.|...+....+..+. +...+..+
T Consensus       133 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l  209 (388)
T d1w3ba_         133 DLYCVRSDLGNLLKALGR-LEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINL  209 (388)
T ss_dssp             TCTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             ccccccccccccccccch-hhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence            122222223333333344 555555555554432 223344555556666667777777777766665433 56677778


Q ss_pred             HHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCCh
Q 038522          376 IDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLT  451 (590)
Q Consensus       376 ~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~  451 (590)
                      ...+...|++++|...+++..+   .+...+..+...+.+.|++++|+..|++..+.  .| +...+..+...+...|++
T Consensus       210 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~  287 (388)
T d1w3ba_         210 GNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSV  287 (388)
T ss_dssp             HHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCH
T ss_pred             hhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCH
Confidence            8888889999999988887653   45567778888999999999999999998875  45 577888889999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038522          452 CEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNL  529 (590)
Q Consensus       452 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  529 (590)
                      ++|.+.++.....  .+.+...+..+...+...|++++|++.|++. ...| +..++..+...+...|++++|+..++++
T Consensus       288 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  365 (388)
T d1w3ba_         288 AEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEA  365 (388)
T ss_dssp             HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHhhhcc--CCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999998864  3456778888999999999999999999987 5566 4667888999999999999999999999


Q ss_pred             hcCCCCCcchHHHHHHHHHhcCC
Q 038522          530 FDMEPEKSVNYVVLSNIYTAAGA  552 (590)
Q Consensus       530 ~~~~p~~~~~~~~l~~~~~~~g~  552 (590)
                      ++++|+++.+|..|+.+|.+.||
T Consensus       366 l~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         366 IRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999998886

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=9.7e-21  Score=182.08  Aligned_cols=356  Identities=15%  Similarity=0.076  Sum_probs=272.7

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCCh
Q 038522          204 IGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSI  283 (590)
Q Consensus       204 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  283 (590)
                      ...+.+.|++++|.+.++++.+.. +-+...+..+...+.+.|++++|...++.+++.. +.+..++..+..+|.+.|++
T Consensus         6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~   83 (388)
T d1w3ba_           6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL   83 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence            445666777777777777776653 2245566666677777778888888777777664 44566777788888888888


Q ss_pred             HHHHHHHHhccCC---CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHH
Q 038522          284 RSAYQLYRSMLKT---DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFA  360 (590)
Q Consensus       284 ~~a~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  360 (590)
                      ++|...+......   +................ ...+........... .................+....+...+...
T Consensus        84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (388)
T d1w3ba_          84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGD-MEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSC-SSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccc-ccccccccccccccc-cccccccccccccccccchhhhhHHHHHHh
Confidence            8888888877432   22333333344444444 555555555554443 333334444455556666667777776666


Q ss_pred             HHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHH
Q 038522          361 FKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVT  437 (590)
Q Consensus       361 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~  437 (590)
                      ....+. +...+..+...+...|++++|...+++..+  | +...|..+...+...|++++|...+++....+ +.+...
T Consensus       162 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  239 (388)
T d1w3ba_         162 IETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV  239 (388)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred             hccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence            665533 566777888899999999999999998763  3 55688889999999999999999999998863 446777


Q ss_pred             HHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHH
Q 038522          438 FLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACS  514 (590)
Q Consensus       438 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~  514 (590)
                      +..+...+...|++++|...|++..+.   .| +...+..+...+...|++++|++.++..  ..+.+...+..+...+.
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  316 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKR  316 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHH
Confidence            888889999999999999999999864   44 4778899999999999999999999988  44557778889999999


Q ss_pred             hcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          515 IYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       515 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ..|++++|+..++++++..|+++.++..++.+|...|++++|++.++++.+..+
T Consensus       317 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P  370 (388)
T d1w3ba_         317 EQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP  370 (388)
T ss_dssp             TTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            999999999999999999999999999999999999999999999999887543

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=1.5e-14  Score=134.40  Aligned_cols=240  Identities=13%  Similarity=0.003  Sum_probs=149.7

Q ss_pred             HHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC
Q 038522          304 LISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSG  383 (590)
Q Consensus       304 l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  383 (590)
                      ....+.+.|+ +++|+..|++.++.. +-+...+..+..++...|+++.|...+..+.+..+. +...+..+...|...|
T Consensus        25 ~g~~~~~~g~-~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          25 EGLRRLQEGD-LPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHTTC-HHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC-HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence            3445666777 777777777776542 223344555555555555555555555555554432 3444444555555555


Q ss_pred             ChHHHHHHHHhcCC--CCcch-HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHH
Q 038522          384 EIADANRAFDEMGD--KNVIS-WTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTD  460 (590)
Q Consensus       384 ~~~~A~~~~~~~~~--~~~~~-~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  460 (590)
                      ++++|.+.++....  |+... +.......                    ...+.......+..+...+.+.+|.+.+.+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  161 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA  161 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence            55555555544331  11000 00000000                    000000111112233344567778888887


Q ss_pred             HHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc
Q 038522          461 MINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV  538 (590)
Q Consensus       461 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  538 (590)
                      ..+.....++...+..+...+...|++++|+..+++. ...| +...|..+...+...|++++|++.++++++++|+++.
T Consensus       162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  241 (323)
T d1fcha_         162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  241 (323)
T ss_dssp             HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence            7765333445667778888888999999999999887 3344 5677888888899999999999999999999999999


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          539 NYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       539 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      ++..++.+|...|++++|++.|++..+.
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l  269 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNM  269 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999999999988774

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=5.1e-13  Score=123.93  Aligned_cols=266  Identities=12%  Similarity=0.048  Sum_probs=195.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHhccC--C-CccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchh
Q 038522          272 SLIDVYAKYGSIRSAYQLYRSMLK--T-DIISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVA  348 (590)
Q Consensus       272 ~l~~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~  348 (590)
                      .....+.+.|++++|...|+++.+  | +..+|..+...+...|+ +++|...|.+.++.. +-+...+..+...+...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~-~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQ-ELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC-hHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            466778999999999999999843  3 45678888899999999 999999999998763 335567778888999999


Q ss_pred             hhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHH
Q 038522          349 SLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKH  428 (590)
Q Consensus       349 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~  428 (590)
                      +++.|...+..+....+..... ........                ...+.......+..+...+.+.+|.+.+.+..+
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~-~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~  164 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHL-VTPAEEGA----------------GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVR  164 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGG-CC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHH-HHhhhhhh----------------hhcccccchhhHHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999988765432110 00000000                000111111122233445567788888888776


Q ss_pred             cCC-CCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHh
Q 038522          429 EGM-VPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TAS  504 (590)
Q Consensus       429 ~g~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~  504 (590)
                      ... .++...+..+...+...|++++|+..+++....   .| +...+..+...|.+.|++++|.+.|+++ ...| +..
T Consensus       165 ~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~  241 (323)
T d1fcha_         165 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR  241 (323)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HhhcccccccchhhHHHHHHHHHHhhhhccccccccc---ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence            422 235677888888899999999999999999865   34 4778889999999999999999999998 4455 567


Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch-----------HHHHHHHHHhcCChHHHHHH
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN-----------YVVLSNIYTAAGAWDNARKT  559 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~A~~~  559 (590)
                      +|..+..+|...|++++|+..|+++++++|++...           |..+..++...|+.+.+...
T Consensus       242 a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         242 SRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            78999999999999999999999999988866543           45577788778887766544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.18  E-value=5.5e-09  Score=97.51  Aligned_cols=194  Identities=12%  Similarity=0.006  Sum_probs=123.1

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCC-------CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHcCC----CCcHH
Q 038522          372 GNALIDMYAKSGEIADANRAFDEMGD-------KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEGM----VPNDV  436 (590)
Q Consensus       372 ~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~  436 (590)
                      +..+...+...|++..+...+.....       +.    ...+..+...+...|+++.+...+.+......    .....
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  173 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ  173 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHH
Confidence            34445556666776666666655431       11    12344556677777888888888777665321    12334


Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-----hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-----CHhH
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-----AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-----TASL  505 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-----~~~~  505 (590)
                      .+......+...+++..+...+............     ...+..+...+...|++++|...+++. ...|     ....
T Consensus       174 ~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  253 (366)
T d1hz4a_         174 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ  253 (366)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHH
Confidence            5555556666777777777777666543221111     223445566677888888888888876 2211     1234


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHh------cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          506 WSAILGACSIYGNTSLGELAARNLF------DMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       506 ~~~l~~~~~~~~~~~~a~~~~~~~~------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      +..+..++...|+++.|...+++++      +..|....++..++.+|...|++++|.+.+++..+
T Consensus       254 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         254 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4556777888888888888888876      33455566788888888888888888888887655

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.1e-09  Score=99.95  Aligned_cols=223  Identities=11%  Similarity=0.089  Sum_probs=151.3

Q ss_pred             HHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC-ChHHHHHHHHhcCC---CCcchHHHHHHHHH
Q 038522          336 ILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSG-EIADANRAFDEMGD---KNVISWTSLIAGYA  411 (590)
Q Consensus       336 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~---~~~~~~~~l~~~~~  411 (590)
                      .++.+-..+.+.+..++|..+++.+++..+. +...|+....++...| ++++|+..++.+.+   .+..+|..+...+.
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            3444445556667778888888888887654 5666677777777665 47888888877652   35567777777888


Q ss_pred             hcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCC---
Q 038522          412 KHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQ---  486 (590)
Q Consensus       412 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~---  486 (590)
                      +.|++++|++.++++.+.  .| +...|..+...+...|++++|++.++.+.+.   .| +...|+.+...+.+.+.   
T Consensus       124 ~l~~~~eAl~~~~kal~~--dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~---~p~n~~a~~~r~~~l~~~~~~~~  198 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQ--DAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYND  198 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred             hhccHHHHHHHHhhhhhh--hhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH---CCccHHHHHHHHHHHHHccccch
Confidence            888888888888888774  44 5777777888888888888888888888764   44 45667666666665554   


Q ss_pred             ---hHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC--cchHHHHHHHHHhc--CChHHHH
Q 038522          487 ---LESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEK--SVNYVVLSNIYTAA--GAWDNAR  557 (590)
Q Consensus       487 ---~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~--g~~~~A~  557 (590)
                         +++|++.+.++ ...| +...|..+...+. ....+++.+.++.+.++.|..  +..+..++.+|...  ++.+.+.
T Consensus       199 ~~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~~~~~~~~~~  277 (315)
T d2h6fa1         199 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE  277 (315)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             hhhhHHhHHHHHHHHHhCCCchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHHHhcCHHHHH
Confidence               46777777766 4344 4556666655543 344577777777777766643  33455666666543  6667777


Q ss_pred             HHHHHhhh
Q 038522          558 KTRKLMEE  565 (590)
Q Consensus       558 ~~~~~~~~  565 (590)
                      ..+++..+
T Consensus       278 ~~~~ka~~  285 (315)
T d2h6fa1         278 DILNKALE  285 (315)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            77776554

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=4.5e-10  Score=99.85  Aligned_cols=90  Identities=14%  Similarity=-0.017  Sum_probs=45.4

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhc
Q 038522          372 GNALIDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSH  447 (590)
Q Consensus       372 ~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~  447 (590)
                      +..+..+|.+.|++++|...|++..+   .++.+|+.+..++.+.|++++|+..|+++.+.  .| +..++..+..++..
T Consensus        40 ~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          40 LYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPTYNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--HhhhhhhHHHHHHHHHH
Confidence            33444455555555555555554431   23345555555555555555555555555543  23 23444445555555


Q ss_pred             cCChHHHHHHHHHHHh
Q 038522          448 TGLTCEGWELFTDMIN  463 (590)
Q Consensus       448 ~~~~~~a~~~~~~~~~  463 (590)
                      .|++++|.+.++...+
T Consensus       118 ~g~~~~A~~~~~~al~  133 (259)
T d1xnfa_         118 GGRDKLAQDDLLAFYQ  133 (259)
T ss_dssp             TTCHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHh
Confidence            5555555555555554

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.8e-09  Score=95.47  Aligned_cols=187  Identities=13%  Similarity=0.125  Sum_probs=113.5

Q ss_pred             hHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhchh-hhHhHHHHHHHHHHhCCCcchhHHHHHHHH
Q 038522          301 CTALISGFARDDNHSKEAFDLFKDMILKKMGIDD-VILCLMLNICANVA-SLNLGRQIHAFAFKYQSSYDAAVGNALIDM  378 (590)
Q Consensus       301 ~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  378 (590)
                      ++.+...+.+.+. +++|+.+++++++.  .|+. ..|.....++...+ ++++|...++.+.+..+. +..++..+...
T Consensus        46 ~~~~~~~~~~~e~-~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~  121 (315)
T d2h6fa1          46 YDYFRAVLQRDER-SERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHTCC-CHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCc-hHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence            4444445555555 77777777777765  4443 34444455555544 467777777777776654 56666667777


Q ss_pred             HHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCC----
Q 038522          379 YAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGL----  450 (590)
Q Consensus       379 ~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~----  450 (590)
                      +.+.|++++|+..++++.+   .+...|..+...+...|++++|++.++++++.  .| +...|+.+...+.+.+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence            7777777777777777663   34566777777777777777777777777764  34 45555554444443333    


Q ss_pred             --hHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcCChHHHHHHHHhc
Q 038522          451 --TCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRGQLESAYNMIRQM  497 (590)
Q Consensus       451 --~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  497 (590)
                        +++|++.+....+.   .| +...|..+...+.. ...+++.+.++..
T Consensus       200 ~~~~~ai~~~~~al~~---~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~  245 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKL---VPHNESAWNYLKGILQD-RGLSKYPNLLNQL  245 (315)
T ss_dssp             HHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTT-TCGGGCHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHh---CCCchHHHHHHHHHHHh-cChHHHHHHHHHH
Confidence              45677777666653   34 35555555444433 3345555555544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=1.4e-09  Score=100.61  Aligned_cols=227  Identities=6%  Similarity=-0.093  Sum_probs=153.0

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhch--hhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHH
Q 038522          315 SKEAFDLFKDMILKKMGIDDVILCLMLNICANV--ASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAF  392 (590)
Q Consensus       315 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  392 (590)
                      +++|+.+++...+.. +-+...+.....++...  ++++.+...+..+.+..++.....+......+...+.+++|+..+
T Consensus        89 ~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~  167 (334)
T d1dcea1          89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  167 (334)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHH
Confidence            445555555555432 22223333333333332  235566666666666544433333344556677789999999999


Q ss_pred             HhcCCC---CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC
Q 038522          393 DEMGDK---NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP  469 (590)
Q Consensus       393 ~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~  469 (590)
                      +.+.+.   +...|+.+...+.+.|++++|...+++..+.  .|+..   .+...+...+..+++...+......  .++
T Consensus       168 ~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~~--~~~  240 (334)
T d1dcea1         168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLLG--RAE  240 (334)
T ss_dssp             HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHHS--CCC
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHHh--Ccc
Confidence            988853   4557888888899999988887666554442  22221   2233345566777888888777653  344


Q ss_pred             ChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH
Q 038522          470 RAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY  547 (590)
Q Consensus       470 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~  547 (590)
                      +...+..++..+...|+.++|...+.+. ...| +..++..+...+...|++++|++.++++++++|.+...|..|...+
T Consensus       241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~  320 (334)
T d1dcea1         241 PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  320 (334)
T ss_dssp             CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence            4556667777888889999999999888 5455 4567788889999999999999999999999998888889888877


Q ss_pred             Hh
Q 038522          548 TA  549 (590)
Q Consensus       548 ~~  549 (590)
                      ..
T Consensus       321 ~~  322 (334)
T d1dcea1         321 LL  322 (334)
T ss_dssp             HH
T ss_pred             hH
Confidence            64

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=5.1e-08  Score=90.69  Aligned_cols=86  Identities=9%  Similarity=-0.006  Sum_probs=38.1

Q ss_pred             HHHHhcCCchHHHHHHHHHHHcCCCCCh------hhHHHHHHHhccCCChhHHHHHHHHHHHhCC--C---CChhHHHHH
Q 038522          205 GGLAMQGFNDDSFWLFRSMMRQGMKPDC------FTLGSILRASVGGIELMKISQIHDLIIKLGL--E---SSNKLTGSL  273 (590)
Q Consensus       205 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l  273 (590)
                      ..+...|++++|++++++..+..  |+.      ..+..+...+...|++++|...++...+...  .   .....+..+
T Consensus        20 ~~~~~~g~~~~A~~~~~~aL~~~--~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          20 QVAINDGNPDEAERLAKLALEEL--PPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTC--CTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhC--cCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            34455566666666665555432  211      1233334444455555555555554443210  0   011223334


Q ss_pred             HHHHHhcCChHHHHHHHHh
Q 038522          274 IDVYAKYGSIRSAYQLYRS  292 (590)
Q Consensus       274 ~~~~~~~g~~~~a~~~~~~  292 (590)
                      ...+...|++..+...+..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~  116 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEK  116 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            4445555555555554433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=3.1e-09  Score=94.22  Aligned_cols=221  Identities=10%  Similarity=-0.031  Sum_probs=142.5

Q ss_pred             hHHHHHHHHHHHHcCC-CC--CHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHH
Q 038522          315 SKEAFDLFKDMILKKM-GI--DDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRA  391 (590)
Q Consensus       315 ~~~a~~~~~~~~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  391 (590)
                      .+.++.-+++...... .+  ...++..+...+.+.|+++.|...++...+..+. ++.+++.+..+|.+.|++++|+..
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~   93 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEA   93 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhh
Confidence            4455555666654321 11  1134555566777888888888888888877654 677888999999999999999999


Q ss_pred             HHhcCC--C-CcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCC
Q 038522          392 FDEMGD--K-NVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRIL  468 (590)
Q Consensus       392 ~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  468 (590)
                      |+++.+  | +..++..+..++...|++++|...|++..+.. +.+......+..++.+.+..+.+..+.......   .
T Consensus        94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~  169 (259)
T d1xnfa_          94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---D  169 (259)
T ss_dssp             HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---C
T ss_pred             hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---c
Confidence            998873  3 45678888999999999999999999998863 224444444444455555555555555554432   2


Q ss_pred             CChhHHHHHHHHHHhcCCh----HHHHHHHHhc-CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHH
Q 038522          469 PRAEHFSCVVDLFARRGQL----ESAYNMIRQM-NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYV  541 (590)
Q Consensus       469 ~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~-~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  541 (590)
                      ++...+. ++..+......    +.+...+... ...|+ ..+|..+...+...|++++|+..+++++..+|++...|.
T Consensus       170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~  247 (259)
T d1xnfa_         170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR  247 (259)
T ss_dssp             CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred             hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence            2222222 22222222222    2222222211 22232 346677888889999999999999999999997654443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=2.3e-08  Score=90.88  Aligned_cols=179  Identities=7%  Similarity=0.034  Sum_probs=90.7

Q ss_pred             hHHHHHHHHhcCC----CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHH
Q 038522          385 IADANRAFDEMGD----KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTD  460 (590)
Q Consensus       385 ~~~A~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  460 (590)
                      .++|..+|++..+    .+...|...+....+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|++
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            3445555554331    123345555555555666666666666655432111233455555555556666666666666


Q ss_pred             HHhhcCCCCChhHHHHHHHH-HHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522          461 MINKYRILPRAEHFSCVVDL-FARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       461 ~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      +.+.  .+.+...|...+.. +...|+.+.|..+|+.+  ..+.++..|..++......|+++.|+.+|+++++..|.++
T Consensus       160 al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 ARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            5532  11122233332222 22345566666666655  2233445556666655666666666666666665544332


Q ss_pred             c----hHHHHHHHHHhcCChHHHHHHHHHhhh
Q 038522          538 V----NYVVLSNIYTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       538 ~----~~~~l~~~~~~~g~~~~A~~~~~~~~~  565 (590)
                      .    .|..++..-...|+.+.+.++.+.+.+
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2    455555555555666666666665544

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.03  E-value=3.3e-08  Score=89.83  Aligned_cols=188  Identities=9%  Similarity=0.080  Sum_probs=148.6

Q ss_pred             hhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCC--C-C-cchHHHHHHHHHhcCCchHHHHHH
Q 038522          348 ASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGD--K-N-VISWTSLIAGYAKHGYGHEAIELY  423 (590)
Q Consensus       348 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~-~-~~~~~~l~~~~~~~~~~~~a~~~~  423 (590)
                      +..+.+..+++...+...+.+...+..++..+.+.|+++.|..+|+.+.+  | + ...|...+....+.|+.+.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            45678888999888766666778888889999999999999999998764  3 2 236888899999999999999999


Q ss_pred             HHHHHcCCCCcHHHHHHHHHH-hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc----C
Q 038522          424 KKMKHEGMVPNDVTFLSLLFA-CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM----N  498 (590)
Q Consensus       424 ~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~----~  498 (590)
                      +++.+.+ +.+...|...... +...|+.+.|..+|+.+.+.  .+.+...+..+++.+.+.|++++|..+|++.    +
T Consensus       158 ~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~  234 (308)
T d2onda1         158 KKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS  234 (308)
T ss_dssp             HHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSS
T ss_pred             HHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC
Confidence            9998763 2234444433332 33468899999999999976  2445788999999999999999999999997    3


Q ss_pred             CCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc
Q 038522          499 IKPT--ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSV  538 (590)
Q Consensus       499 ~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  538 (590)
                      ..|+  ...|...+.--...|+.+.+..+++++.+..|....
T Consensus       235 ~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~  276 (308)
T d2onda1         235 LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE  276 (308)
T ss_dssp             SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred             CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence            3443  346788877777889999999999999988885543

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.99  E-value=4.2e-10  Score=104.24  Aligned_cols=243  Identities=6%  Similarity=-0.099  Sum_probs=176.3

Q ss_pred             hHHHHHHHHHHHHcCCCCCHHHH-H---HHHH-------HHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcC
Q 038522          315 SKEAFDLFKDMILKKMGIDDVIL-C---LMLN-------ICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSG  383 (590)
Q Consensus       315 ~~~a~~~~~~~~~~~~~p~~~~~-~---~ll~-------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  383 (590)
                      .++|+.++.+.++.  .|+..+. +   .++.       .....+.++.+..+++.+.+..++ +...+..+..++...+
T Consensus        45 ~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~  121 (334)
T d1dcea1          45 DESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (334)
T ss_dssp             SHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             cHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhc
Confidence            56777777777654  4554332 1   1112       233456678888888888887654 5566666666666655


Q ss_pred             --ChHHHHHHHHhcCC---CCcchHH-HHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHH
Q 038522          384 --EIADANRAFDEMGD---KNVISWT-SLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWE  456 (590)
Q Consensus       384 --~~~~A~~~~~~~~~---~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~  456 (590)
                        ++++|...++++.+   ++...+. .....+...+.+++|+..++++.+.  .| +...|..+...+...|++++|..
T Consensus       122 ~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~--~p~~~~a~~~l~~~~~~~~~~~~A~~  199 (334)
T d1dcea1         122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGP  199 (334)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT--TCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCHHHHHH
Confidence              48899999988763   3444554 3446777789999999999998875  45 67788888888999999988876


Q ss_pred             HHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC
Q 038522          457 LFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       457 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  534 (590)
                      .++...+.   .|+   ...+...+...+..+++...+...  ..+++...+..+...+...|+++.|...+.++.+.+|
T Consensus       200 ~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p  273 (334)
T d1dcea1         200 QGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK  273 (334)
T ss_dssp             CCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence            66555432   121   112334455667777788777776  3344555666777778888999999999999999999


Q ss_pred             CCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          535 EKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       535 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      .+..++..++.+|...|++++|++.++++.+..+
T Consensus       274 ~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP  307 (334)
T d1dcea1         274 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP  307 (334)
T ss_dssp             HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCG
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence            9999999999999999999999999999988654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.84  E-value=7.9e-09  Score=87.49  Aligned_cols=97  Identities=9%  Similarity=0.039  Sum_probs=51.4

Q ss_pred             CChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522          469 PRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI  546 (590)
Q Consensus       469 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  546 (590)
                      |+...+......|.+.|++++|+..|+++ ...| ++..|..+..+|...|+++.|+..++++++++|+++.+|..++.+
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence            33444444455555555555555555544 2222 344455555555555555555555555555555555555555555


Q ss_pred             HHhcCChHHHHHHHHHhhh
Q 038522          547 YTAAGAWDNARKTRKLMEE  565 (590)
Q Consensus       547 ~~~~g~~~~A~~~~~~~~~  565 (590)
                      |...|++++|+..++++.+
T Consensus        82 ~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          82 QLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            5555555555555555544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=1.6e-08  Score=76.51  Aligned_cols=90  Identities=13%  Similarity=0.161  Sum_probs=57.4

Q ss_pred             HHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHH
Q 038522          478 VDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDN  555 (590)
Q Consensus       478 ~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~  555 (590)
                      ...+.+.|++++|+..|+++ ...| ++..|..+..++...|++++|+..++++++++|+++.+|..++.+|...|++++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~   89 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEE   89 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHH
Confidence            34556666666666666665 2233 445566666666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHhhhcC
Q 038522          556 ARKTRKLMEERS  567 (590)
Q Consensus       556 A~~~~~~~~~~~  567 (590)
                      |+..+++..+..
T Consensus        90 A~~~~~~a~~~~  101 (117)
T d1elwa_          90 AKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhC
Confidence            666666666543

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.75  E-value=1.6e-07  Score=84.19  Aligned_cols=192  Identities=10%  Similarity=-0.018  Sum_probs=124.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHhcCC-----CC----cchHHHHHHHHHhcCCchHHHHHHHHHHHcC---CCC--cHHHHH
Q 038522          374 ALIDMYAKSGEIADANRAFDEMGD-----KN----VISWTSLIAGYAKHGYGHEAIELYKKMKHEG---MVP--NDVTFL  439 (590)
Q Consensus       374 ~l~~~~~~~~~~~~A~~~~~~~~~-----~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g---~~p--~~~~~~  439 (590)
                      .....|...|++++|...|.+..+     .+    ..+|..+..+|.+.|++++|.+.+++..+.-   -.+  ...++.
T Consensus        42 ~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  121 (290)
T d1qqea_          42 QAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKF  121 (290)
T ss_dssp             HHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHH
Confidence            345567777777777777776542     12    2467778888888888888888888765421   111  234455


Q ss_pred             HHHHHhh-ccCChHHHHHHHHHHHhhc---CCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH--------hH
Q 038522          440 SLLFACS-HTGLTCEGWELFTDMINKY---RILPR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA--------SL  505 (590)
Q Consensus       440 ~ll~~~~-~~~~~~~a~~~~~~~~~~~---~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~--------~~  505 (590)
                      .+...|. ..|++++|.+.+++..+-.   +..+. ..++..+...+...|++++|++.|+++ ...|+.        ..
T Consensus       122 ~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~  201 (290)
T d1qqea_         122 ELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDY  201 (290)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHH
T ss_pred             HHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHH
Confidence            6666664 4699999999998876432   11111 345777889999999999999999887 211111        12


Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcc-----hHHHHHHHHHh--cCChHHHHHHHHHhhh
Q 038522          506 WSAILGACSIYGNTSLGELAARNLFDMEPEKSV-----NYVVLSNIYTA--AGAWDNARKTRKLMEE  565 (590)
Q Consensus       506 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~~~~  565 (590)
                      +...+..+...|+++.|...++++.+.+|..+.     ....++.++..  .+.+++|+..|+++.+
T Consensus       202 ~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         202 FLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            334445667789999999999999999884333     34455566554  3568888888875443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=7.9e-08  Score=79.93  Aligned_cols=122  Identities=12%  Similarity=0.017  Sum_probs=91.7

Q ss_pred             HHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHHhcC
Q 038522          407 IAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFARRG  485 (590)
Q Consensus       407 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g  485 (590)
                      ...+...|+++.|++.|+++    .+|++.++..+..++...|++++|++.|++..+.   .| +...|..+..+|.+.|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l---dp~~~~a~~~~g~~~~~~g   84 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR---DKHLAVAYFQRGMLYYQTE   84 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH---hhhhhhhHHHHHHHHHhhc
Confidence            45567788888888888754    3567777888888888888888888888888864   44 4677888888888888


Q ss_pred             ChHHHHHHHHhc--CCCCC----------------HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          486 QLESAYNMIRQM--NIKPT----------------ASLWSAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       486 ~~~~A~~~~~~~--~~~p~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                      ++++|++.|++.  -.+++                ..++..+..++...|++++|.+.+++++++.|.
T Consensus        85 ~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~  152 (192)
T d1hh8a_          85 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  152 (192)
T ss_dssp             CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             cHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence            888888888876  11111                134556667778888888888888888888884

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.73  E-value=1.5e-08  Score=75.86  Aligned_cols=89  Identities=11%  Similarity=0.028  Sum_probs=80.9

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 038522          475 SCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGA  552 (590)
Q Consensus       475 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  552 (590)
                      -.+...+.+.|++++|+..|++. ...| ++.+|..+..++.+.|++++|+..++++++++|.++.++..++.+|...|+
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            34567788999999999999998 4445 678899999999999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHHHh
Q 038522          553 WDNARKTRKLM  563 (590)
Q Consensus       553 ~~~A~~~~~~~  563 (590)
                      +++|.+.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=1e-07  Score=71.95  Aligned_cols=106  Identities=11%  Similarity=0.040  Sum_probs=88.2

Q ss_pred             HHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCC
Q 038522          441 LLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGN  518 (590)
Q Consensus       441 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~  518 (590)
                      -...+...|++++|+..|++..+.  .+.+...|..+..+|...|++++|+..+++. .+ +.++..|..+..++...|+
T Consensus         9 ~g~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           9 KGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            345677889999999999999865  2335778888899999999999999999888 33 4467788999999999999


Q ss_pred             chHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          519 TSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       519 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      +++|+..++++++.+|+++.++..+..+-.
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            999999999999999999988888876643

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4.3e-07  Score=75.35  Aligned_cols=146  Identities=12%  Similarity=0.029  Sum_probs=116.3

Q ss_pred             HHHHHhcCChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHH
Q 038522          376 IDMYAKSGEIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEG  454 (590)
Q Consensus       376 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a  454 (590)
                      ...+...|+++.|++.|+++..++...|..+..++...|++++|++.|++.++.  .| +...|..+..++.+.|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l--dp~~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH--hhhhhhhHHHHHHHHHhhccHHHH
Confidence            445678899999999999999999999999999999999999999999999985  45 677888899999999999999


Q ss_pred             HHHHHHHHhhcC-----------CC--CC-hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCHhHHHHHHHHHHhcCCc
Q 038522          455 WELFTDMINKYR-----------IL--PR-AEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTASLWSAILGACSIYGNT  519 (590)
Q Consensus       455 ~~~~~~~~~~~~-----------~~--~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~~~~~~l~~~~~~~~~~  519 (590)
                      .+.|++......           ..  ++ ..++..+..++.+.|++++|.+.++.. ...|+.           ..+..
T Consensus        90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~-----------~~~~~  158 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP-----------RHSKI  158 (192)
T ss_dssp             HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG-----------GGGHH
T ss_pred             HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc-----------chHHH
Confidence            999999875311           01  11 245567788899999999999999988 666653           33445


Q ss_pred             hHHHHHHHHHhcCCC
Q 038522          520 SLGELAARNLFDMEP  534 (590)
Q Consensus       520 ~~a~~~~~~~~~~~p  534 (590)
                      +.|+..+.+.....|
T Consensus       159 ~~Al~~~~~~~~~~~  173 (192)
T d1hh8a_         159 DKAMECVWKQKLYEP  173 (192)
T ss_dssp             HHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHhhhhCCc
Confidence            666666666655555

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.63  E-value=6.1e-08  Score=81.81  Aligned_cols=92  Identities=5%  Similarity=-0.092  Sum_probs=46.1

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHH
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDL  480 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~  480 (590)
                      .+......+.+.|++++|+..|++.++.. +.++..|..+..+|.+.|++++|+..|+...   .+.|+ ...|..+..+
T Consensus         6 ~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al---~l~p~~~~a~~~lg~~   81 (201)
T d2c2la1           6 ELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRAL---ELDGQSVKAHFFLGQC   81 (201)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHT---TSCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHH---HhCCCcHHHHHHHHHH
Confidence            33344455555555555555555555431 2244445555555555555555555555554   23332 4445555555


Q ss_pred             HHhcCChHHHHHHHHhc
Q 038522          481 FARRGQLESAYNMIRQM  497 (590)
Q Consensus       481 ~~~~g~~~~A~~~~~~~  497 (590)
                      |.+.|++++|+..|+++
T Consensus        82 ~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          82 QLEMESYDEAIANLQRA   98 (201)
T ss_dssp             HHHTTCHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHH
Confidence            55555555555555544

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.1e-07  Score=76.40  Aligned_cols=122  Identities=7%  Similarity=-0.029  Sum_probs=100.2

Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHH
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACS  514 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~  514 (590)
                      .+......|.+.|++++|+..|++..+.  .+.+...|..+..+|...|++++|.+.|+++ .+.| +..+|..++.++.
T Consensus        12 ~l~~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          12 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            3455567788999999999999999975  1335788889999999999999999999998 4445 5578999999999


Q ss_pred             hcCCchHHHHHHHHHhcCCCCCcchHHHHHHHH--HhcCChHHHHHHH
Q 038522          515 IYGNTSLGELAARNLFDMEPEKSVNYVVLSNIY--TAAGAWDNARKTR  560 (590)
Q Consensus       515 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~A~~~~  560 (590)
                      ..|++++|+..++++++++|.++.++..+..+.  ...+.+++|....
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~~  137 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGD  137 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999999999999999888877664  3455577776553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=3.1e-07  Score=73.77  Aligned_cols=88  Identities=15%  Similarity=0.039  Sum_probs=53.4

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCC-ChhHHHHHHHHHH
Q 038522          405 SLIAGYAKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILP-RAEHFSCVVDLFA  482 (590)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~  482 (590)
                      .....+.+.|++++|+..|++..+.  .| +...|..+..++...|++++|...|+++.+.   .| +...|..++.++.
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~---~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL---DKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHH---cccchHHHHHHHHHHH
Confidence            3445556666666666666666654  33 4555666666666666666666666666643   23 3456666666666


Q ss_pred             hcCChHHHHHHHHhc
Q 038522          483 RRGQLESAYNMIRQM  497 (590)
Q Consensus       483 ~~g~~~~A~~~~~~~  497 (590)
                      ..|++++|.+.+++.
T Consensus        90 ~~g~~~eA~~~~~~a  104 (159)
T d1a17a_          90 ALGKFRAALRDYETV  104 (159)
T ss_dssp             HTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHH
Confidence            666666666666665

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.51  E-value=9.1e-07  Score=79.16  Aligned_cols=173  Identities=9%  Similarity=-0.013  Sum_probs=129.7

Q ss_pred             ChHHHHHHHHhcCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHc----CCCCc-HHHHHHHHHHhhccCChHHHHHHH
Q 038522          384 EIADANRAFDEMGDKNVISWTSLIAGYAKHGYGHEAIELYKKMKHE----GMVPN-DVTFLSLLFACSHTGLTCEGWELF  458 (590)
Q Consensus       384 ~~~~A~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~  458 (590)
                      ++++|..+|.+           ....|...|++++|.+.|.+..+.    +-.|+ ..+|..+..+|.+.|++++|.+.+
T Consensus        32 ~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~  100 (290)
T d1qqea_          32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL  100 (290)
T ss_dssp             HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence            45666666544           577888999999999999988653    22222 357888899999999999999999


Q ss_pred             HHHHhhcCCCCC----hhHHHHHHHHHHh-cCChHHHHHHHHhc-------CCCCC-HhHHHHHHHHHHhcCCchHHHHH
Q 038522          459 TDMINKYRILPR----AEHFSCVVDLFAR-RGQLESAYNMIRQM-------NIKPT-ASLWSAILGACSIYGNTSLGELA  525 (590)
Q Consensus       459 ~~~~~~~~~~~~----~~~~~~l~~~~~~-~g~~~~A~~~~~~~-------~~~p~-~~~~~~l~~~~~~~~~~~~a~~~  525 (590)
                      ++..+-+.-..+    ..++..+...|.. .|++++|++.+++.       +.++. ..++..+...+...|++++|+..
T Consensus       101 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~  180 (290)
T d1qqea_         101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI  180 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence            987654211222    3456666777754 69999999999877       21221 34577788999999999999999


Q ss_pred             HHHHhcCCCCCcc-------hHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          526 ARNLFDMEPEKSV-------NYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       526 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      ++++....|.++.       .+...+.++...|+++.|.+.+++..+..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~  229 (290)
T d1qqea_         181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (290)
T ss_dssp             HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             HHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence            9999988875543       24567778889999999999999887754

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.1e-06  Score=71.09  Aligned_cols=84  Identities=7%  Similarity=-0.034  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA  550 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  550 (590)
                      +|+.+..+|.+.|++++|+..+++. .+.| ++.+|..+..++...|++++|+..|+++++++|+++.+...+..+....
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  143 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRI  143 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4666788899999999999999988 4455 7788899999999999999999999999999999999999998888776


Q ss_pred             CChHHH
Q 038522          551 GAWDNA  556 (590)
Q Consensus       551 g~~~~A  556 (590)
                      +...+.
T Consensus       144 ~~~~~~  149 (170)
T d1p5qa1         144 RRQLAR  149 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            665554

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=4.1e-07  Score=68.63  Aligned_cols=105  Identities=8%  Similarity=-0.097  Sum_probs=70.9

Q ss_pred             HHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCC---hHHHHHHHHhc-CCCCCH---hHHHHHHHH
Q 038522          440 SLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQ---LESAYNMIRQM-NIKPTA---SLWSAILGA  512 (590)
Q Consensus       440 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~-~~~p~~---~~~~~l~~~  512 (590)
                      .+++.+...+++++|.+.|++....  -+.+..++..+..++.+.++   +++|+.+++++ ...|++   .+|..+..+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~--~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAA--GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            4566666777777888887777754  13345666677777765443   44577777776 444433   356677778


Q ss_pred             HHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHH
Q 038522          513 CSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNI  546 (590)
Q Consensus       513 ~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~  546 (590)
                      |...|++++|++.|+++++++|++..+...+..+
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I  115 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLI  115 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence            8888888888888888888888777666555433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=3.7e-07  Score=68.88  Aligned_cols=95  Identities=8%  Similarity=-0.054  Sum_probs=79.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcC---CchHHHHHHHHHhcCCCCC--cchHHHHHHHH
Q 038522          475 SCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYG---NTSLGELAARNLFDMEPEK--SVNYVVLSNIY  547 (590)
Q Consensus       475 ~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~  547 (590)
                      ..++..+...+++++|.+.|++. .. +.++.++..+..++.+.+   ++++|+.++++++..+|.+  +.+++.|+.+|
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45778888999999999999998 33 446788888988887654   5567999999999988744  34799999999


Q ss_pred             HhcCChHHHHHHHHHhhhcCCc
Q 038522          548 TAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       548 ~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      .+.|++++|++.++++.+..+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~P~  104 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTEPQ  104 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHhhhHHHHHHHHHHHHhCcC
Confidence            9999999999999999986643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=9.4e-07  Score=71.58  Aligned_cols=65  Identities=6%  Similarity=-0.055  Sum_probs=60.1

Q ss_pred             hHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          504 SLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       504 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      .+|..+..+|.+.|++++|+..++++++++|.++.++..++.+|...|++++|+..|+++.+..+
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P  127 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP  127 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC
Confidence            35667788899999999999999999999999999999999999999999999999999988664

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.35  E-value=7.5e-05  Score=65.27  Aligned_cols=182  Identities=11%  Similarity=-0.014  Sum_probs=114.5

Q ss_pred             cCChHHHHHHHHhcCCC-CcchHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCcHHHHHHHHHH--hhccCChHHH
Q 038522          382 SGEIADANRAFDEMGDK-NVISWTSLIAGYAK----HGYGHEAIELYKKMKHEGMVPNDVTFLSLLFA--CSHTGLTCEG  454 (590)
Q Consensus       382 ~~~~~~A~~~~~~~~~~-~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a  454 (590)
                      ..++..|...+....++ +......+...+..    .++.+.|...+++..+.|..+....+ .....  .........+
T Consensus        51 ~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~l-~~~~~~~~~~~~~~~~a  129 (265)
T d1ouva_          51 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASL-GGIYHDGKVVTRDFKKA  129 (265)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH-HHHHHHCSSSCCCHHHH
T ss_pred             chhHHHHHHhhcccccccccchhhccccccccccccchhhHHHHHHHhhhhhhhhhhHHHhh-cccccCCCcccchhHHH
Confidence            34556666666555432 33333344333332    34667788888887776532222111 11111  1233445666


Q ss_pred             HHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHH
Q 038522          455 WELFTDMINKYRILPRAEHFSCVVDLFAR----RGQLESAYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAA  526 (590)
Q Consensus       455 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~  526 (590)
                      ...+.....    ..+...+..|...|..    ..+...+..+++...-..++.+...+...+..    ..+++.|+..|
T Consensus       130 ~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~  205 (265)
T d1ouva_         130 VEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARY  205 (265)
T ss_dssp             HHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHH
T ss_pred             HHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhH
Confidence            666666554    2456666777777765    45667777777776323466666666666654    56899999999


Q ss_pred             HHHhcCCCCCcchHHHHHHHHHh----cCChHHHHHHHHHhhhcCCcc
Q 038522          527 RNLFDMEPEKSVNYVVLSNIYTA----AGAWDNARKTRKLMEERSLRK  570 (590)
Q Consensus       527 ~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~  570 (590)
                      +++.+.+  ++.++..|+.+|..    ..+.++|.++|++..+.|..+
T Consensus       206 ~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         206 SKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             HHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             hhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHH
Confidence            9998875  47788999999986    458999999999998877543

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.34  E-value=5.2e-06  Score=66.94  Aligned_cols=93  Identities=9%  Similarity=0.038  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhc-CC-CCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQM-NI-KPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA  550 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~-~~-~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  550 (590)
                      +|..+..+|.+.|++++|+..+++. .. +.+..+|..+..++...|++++|+..++++++++|+++.+...+..+....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            4556778889999999999999988 43 446788899999999999999999999999999999999999998888777


Q ss_pred             CChHH-HHHHHHHhhh
Q 038522          551 GAWDN-ARKTRKLMEE  565 (590)
Q Consensus       551 g~~~~-A~~~~~~~~~  565 (590)
                      +...+ ..+.+..|-+
T Consensus       146 ~~~~e~~kk~~~~~f~  161 (168)
T d1kt1a1         146 KEHNERDRRTYANMFK  161 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHh
Confidence            65543 4555555544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=7.2e-07  Score=68.32  Aligned_cols=92  Identities=9%  Similarity=0.098  Sum_probs=65.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcch-------HHHHHH
Q 038522          475 SCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVN-------YVVLSN  545 (590)
Q Consensus       475 ~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-------~~~l~~  545 (590)
                      ..+...+.+.|++++|++.|++. .+.| +...+..+..+|...|+++.|+..++++++++|.++..       |..++.
T Consensus         8 k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           8 KELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34566777778888888888776 3333 46667777788888888888888888888777766543       445556


Q ss_pred             HHHhcCChHHHHHHHHHhhhc
Q 038522          546 IYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       546 ~~~~~g~~~~A~~~~~~~~~~  566 (590)
                      ++...|++++|++.+++....
T Consensus        88 ~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHhc
Confidence            667777888888888776553

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.30  E-value=3.1e-06  Score=67.06  Aligned_cols=63  Identities=6%  Similarity=-0.053  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcC
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERS  567 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  567 (590)
                      ++..+...|.+.|+++.|+..++++++++|.+..+|..++.+|...|++++|+..|++..+..
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~  131 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN  131 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            444555566666666666666666666666666666666666666666666666666665544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.27  E-value=2.7e-06  Score=68.81  Aligned_cols=85  Identities=8%  Similarity=-0.008  Sum_probs=59.8

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYT  548 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~  548 (590)
                      ...+..+..++.+.|++++|+..++++ .+.| ++..|..+..++...|+++.|+..++++++++|+++.++..+..+..
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~  156 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQ  156 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            345566667777778888888877777 4444 45667777777778888888888888888888877777777776665


Q ss_pred             hcCChHH
Q 038522          549 AAGAWDN  555 (590)
Q Consensus       549 ~~g~~~~  555 (590)
                      ......+
T Consensus       157 ~l~~~~~  163 (169)
T d1ihga1         157 KIKAQKD  163 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444333

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.23  E-value=5.4e-06  Score=65.55  Aligned_cols=78  Identities=6%  Similarity=-0.030  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          472 EHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       472 ~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      .++..+..+|.+.|++++|++.++++ .+.| +..+|..+..++...|++++|+..++++++++|+++.+...+..+..+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~k  147 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  147 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46677888999999999999999998 4445 678999999999999999999999999999999999988887766543

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.22  E-value=3e-06  Score=68.52  Aligned_cols=67  Identities=10%  Similarity=-0.004  Sum_probs=61.3

Q ss_pred             CHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          502 TASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       502 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ....+..+...+.+.|++++|+..++++++++|.++.+|..++.+|...|++++|++.|+++.+..+
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p  142 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP  142 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence            3456777888899999999999999999999999999999999999999999999999999988654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.18  E-value=0.0019  Score=57.25  Aligned_cols=174  Identities=10%  Similarity=0.048  Sum_probs=99.4

Q ss_pred             CCcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCCCCccchHHHHHHHH
Q 038522           28 LDPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPERNVVSWTAMISGYA  107 (590)
Q Consensus        28 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~  107 (590)
                      |+..--..++..|.+.|.++.|..++..+         .-|..++..+.+.++++.|.+++.+..  +..+|..+...+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~---------~d~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~   80 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACV   80 (336)
T ss_dssp             C----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhC---------CCHHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence            45555667778888888888888888643         236677777888888888888877553  5567888888887


Q ss_pred             hcCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHH
Q 038522          108 QNGYDENALLVFSAMLRSGVRANQFTYSSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWI  187 (590)
Q Consensus       108 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  187 (590)
                      +.....-+     .+.......+......++..+-..|.++....+++..... -..+...++.++..|++.+ .++..+
T Consensus        81 ~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e  153 (336)
T d1b89a_          81 DGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMRE  153 (336)
T ss_dssp             HTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             hCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHH
Confidence            76655432     2223334456666677888888888888888888877543 2456667888888888764 344444


Q ss_pred             HHhccCCCCcchHHHHHHHHHhcCCchHHHHHHH
Q 038522          188 LFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFR  221 (590)
Q Consensus       188 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  221 (590)
                      .++...  +......++..|-+.+-+.++.-++.
T Consensus       154 ~l~~~s--~~y~~~k~~~~c~~~~l~~elv~Ly~  185 (336)
T d1b89a_         154 HLELFW--SRVNIPKVLRAAEQAHLWAELVFLYD  185 (336)
T ss_dssp             HHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHhcc--ccCCHHHHHHHHHHcCChHHHHHHHH
Confidence            444432  22222333444444444444444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.17  E-value=8.7e-06  Score=65.59  Aligned_cols=64  Identities=3%  Similarity=-0.039  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      .|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|++.|+++.+..+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P  129 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP  129 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            4556777889999999999999999999999999999999999999999999999999987654

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.1e-07  Score=90.27  Aligned_cols=110  Identities=11%  Similarity=-0.001  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHH
Q 038522          436 VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKP-TASLWSAILGAC  513 (590)
Q Consensus       436 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~  513 (590)
                      ..+..+...+.+.|+.++|...++.....   .| ..++..+.+.+...|++++|...|+++ .+.| +...|+.+...+
T Consensus       121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~  196 (497)
T d1ya0a1         121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY---IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA  196 (497)
T ss_dssp             ----------------------CCHHHHH---HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred             HHHHHhHHHHHhCCCHHHHHHHHHHHhCC---CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence            34444444555555555555554444321   11 234444555555556666666666555 3333 234555555555


Q ss_pred             HhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 038522          514 SIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA  549 (590)
Q Consensus       514 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~  549 (590)
                      ...|+..+|+..|.+++...|+.+.++.+|+.++.+
T Consensus       197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            555666666666666665555555555555555443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.12  E-value=8.1e-06  Score=66.14  Aligned_cols=120  Identities=9%  Similarity=0.012  Sum_probs=82.7

Q ss_pred             HHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhcCCCCCHhHHHHHHHHHHhcCCchH
Q 038522          442 LFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQMNIKPTASLWSAILGACSIYGNTSL  521 (590)
Q Consensus       442 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~  521 (590)
                      .......|++++|.+.|.....-+   +....        ......+.+...-..+. +.....+..+..++...|++++
T Consensus        18 g~~~~~~g~~e~A~~~~~~AL~l~---rG~~l--------~~~~~~~w~~~~r~~l~-~~~~~a~~~la~~~~~~g~~~~   85 (179)
T d2ff4a2          18 GVHAAAAGRFEQASRHLSAALREW---RGPVL--------DDLRDFQFVEPFATALV-EDKVLAHTAKAEAEIACGRASA   85 (179)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTC---CSSTT--------GGGTTSTTHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhC---ccccc--------ccCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCchH
Confidence            345667788888888888877532   21100        00000000000001110 0123467778888999999999


Q ss_pred             HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhh-----cCCccCCC
Q 038522          522 GELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEE-----RSLRKNPG  573 (590)
Q Consensus       522 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~  573 (590)
                      |+..++++++.+|.+...|..++.+|...|++++|++.|+.+.+     -|+.|.+.
T Consensus        86 Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~  142 (179)
T d2ff4a2          86 VIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  142 (179)
T ss_dssp             HHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence            99999999999999999999999999999999999999999854     57777654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.96  E-value=4.5e-06  Score=61.91  Aligned_cols=90  Identities=12%  Similarity=-0.014  Sum_probs=75.1

Q ss_pred             HHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHhcCChHHHHHHhccCCC---CCccchHHHHHHHHhc
Q 038522           33 YMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAKVGDVLSARKAFDRMPE---RNVVSWTAMISGYAQN  109 (590)
Q Consensus        33 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~  109 (590)
                      .......+.+.|++.+|...++..++.. +.++.+|..+..++.+.|++++|+..|+...+   .+..+|..+...|...
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            4456677888899999999999998886 45788899999999999999999999988664   3567888888999999


Q ss_pred             CChHHHHHHHHHHH
Q 038522          110 GYDENALLVFSAML  123 (590)
Q Consensus       110 ~~~~~a~~~~~~m~  123 (590)
                      |++++|++.|++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999988753

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=1.7e-05  Score=56.43  Aligned_cols=76  Identities=14%  Similarity=0.067  Sum_probs=60.4

Q ss_pred             hhHHHHHHHHHHhcCChHHHHHHHHhc-----C---CCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHH
Q 038522          471 AEHFSCVVDLFARRGQLESAYNMIRQM-----N---IKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYV  541 (590)
Q Consensus       471 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-----~---~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  541 (590)
                      ...+-.+...+.+.|++++|...|++.     .   ..++ ..++..+..++.+.|++++|+..++++++++|+++.++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            334446778888888988888888876     1   1122 457888999999999999999999999999999999888


Q ss_pred             HHHHH
Q 038522          542 VLSNI  546 (590)
Q Consensus       542 ~l~~~  546 (590)
                      .+...
T Consensus        85 Nl~~~   89 (95)
T d1tjca_          85 NLKYF   89 (95)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.88  E-value=0.0072  Score=53.43  Aligned_cols=130  Identities=8%  Similarity=0.046  Sum_probs=57.4

Q ss_pred             HHHHHHHhccCchhhHHHHHHHHHhcCCCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCch
Q 038522          135 SSALRACARMRWLQGGRMIQGSIQKGRFVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFND  214 (590)
Q Consensus       135 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~  214 (590)
                      ..+...|.+.|.++.|..++..+.+         |..++..+.+.+++..|.+++.+..  +..+|..+...+.+.....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~   86 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFR   86 (336)
T ss_dssp             -----------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHH
Confidence            3344444455555555555543222         2334455555555555555554432  3445555555555544332


Q ss_pred             HHHHHHHHHHHcCCCCChhhHHHHHHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcC
Q 038522          215 DSFWLFRSMMRQGMKPDCFTLGSILRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYG  281 (590)
Q Consensus       215 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  281 (590)
                      -+     .+...+...+......++..+...|.+++...+++..... -..+...++.++..|++.+
T Consensus        87 la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          87 LA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred             HH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence            22     1222223334444455555566666666666555554422 1334445555666665543

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.87  E-value=6.4e-06  Score=64.29  Aligned_cols=74  Identities=16%  Similarity=0.128  Sum_probs=47.1

Q ss_pred             HHHHHHHHhc-CCCC-CHhHHHHHHHHHHhc-----------CCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 038522          488 ESAYNMIRQM-NIKP-TASLWSAILGACSIY-----------GNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWD  554 (590)
Q Consensus       488 ~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~  554 (590)
                      ++|+..|+++ .+.| +..+|..+..+|...           ++++.|.+.|+++++++|++...+..|....       
T Consensus        58 ~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~-------  130 (145)
T d1zu2a1          58 QEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTA-------  130 (145)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHH-------
Confidence            4455555554 3333 344555555555433           2468899999999999998888887777664       


Q ss_pred             HHHHHHHHhhhcCC
Q 038522          555 NARKTRKLMEERSL  568 (590)
Q Consensus       555 ~A~~~~~~~~~~~~  568 (590)
                      .|.+++.++.+.|+
T Consensus       131 ka~~~~~e~~k~~~  144 (145)
T d1zu2a1         131 KAPQLHAEAYKQGL  144 (145)
T ss_dssp             THHHHHHHHHHSSS
T ss_pred             HHHHHHHHHHHHhc
Confidence            55566666655553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.86  E-value=2.7e-05  Score=61.71  Aligned_cols=88  Identities=13%  Similarity=-0.033  Sum_probs=61.9

Q ss_pred             HHHHhcCChHHHHHHHHhc----CCCCC----------HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCC-------C--
Q 038522          479 DLFARRGQLESAYNMIRQM----NIKPT----------ASLWSAILGACSIYGNTSLGELAARNLFDMEP-------E--  535 (590)
Q Consensus       479 ~~~~~~g~~~~A~~~~~~~----~~~p~----------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-------~--  535 (590)
                      ..+.+.|++++|++.|++.    ...|+          ..+|+.+..+|...|+++.|...+++++++.|       .  
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~   96 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG   96 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence            3444556666666666555    11111          24577778888888888888888888875433       1  


Q ss_pred             --CcchHHHHHHHHHhcCChHHHHHHHHHhhhc
Q 038522          536 --KSVNYVVLSNIYTAAGAWDNARKTRKLMEER  566 (590)
Q Consensus       536 --~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  566 (590)
                        ...+++.++.+|...|++++|++.|++..+.
T Consensus        97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence              1235788999999999999999999998764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.84  E-value=0.0011  Score=57.45  Aligned_cols=222  Identities=10%  Similarity=-0.063  Sum_probs=121.5

Q ss_pred             CcccHHHHHHHhhcccchhHHHHHHHHHHHhcCCCchhHHHHHHHHHHh----cCChHHHHHHhccCCCC-CccchHHHH
Q 038522           29 DPSTYMSLLQFCIDKKAERQAHLIHAHIITNGYESNLHLSTKVIIFYAK----VGDVLSARKAFDRMPER-NVVSWTAMI  103 (590)
Q Consensus        29 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~-~~~~~~~li  103 (590)
                      |+..+..|...+...+++++|.+.|+...+.|   +...+..|...|..    ..+...|...+.....+ +......+.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~   77 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   77 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence            34556666677777788888888888887765   44555556666654    45667777666665442 333344444


Q ss_pred             HHHHh----cCChHHHHHHHHHHHHcCCCCCHhhHHHHHHHHh----ccCchhhHHHHHHHHHhcCCCCchHHHHHHHHH
Q 038522          104 SGYAQ----NGYDENALLVFSAMLRSGVRANQFTYSSALRACA----RMRWLQGGRMIQGSIQKGRFVENLFVKSALLDL  175 (590)
Q Consensus       104 ~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  175 (590)
                      ..+..    ..+.+.|...++...+.|....   ...+...+.    .......+...+......   .+...+..|...
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~a---~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~  151 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYAEG---CASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL  151 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH---HHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhhhH---HHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence            43332    3466777777777776653221   111211111    223344445555444443   344455556666


Q ss_pred             HHh----cCChHHHHHHHhccCC-CCcchHHHHHHHHHh----cCCchHHHHHHHHHHHcCCCCChhhHHHHHHHhcc--
Q 038522          176 YAK----CGWIEDAWILFERIER-KDVVSWNAMIGGLAM----QGFNDDSFWLFRSMMRQGMKPDCFTLGSILRASVG--  244 (590)
Q Consensus       176 ~~~----~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~--  244 (590)
                      |..    ..+...+...++...+ .+..+...+...+..    ..+++.|+..|....+.|   ++..+..|...+..  
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~  228 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGE  228 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTS
T ss_pred             hccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCC
Confidence            654    2344555555555443 345555555544444    456677777777776655   23333444444432  


Q ss_pred             --CCChhHHHHHHHHHHHhC
Q 038522          245 --GIELMKISQIHDLIIKLG  262 (590)
Q Consensus       245 --~~~~~~a~~~~~~~~~~~  262 (590)
                        ..+.+.|.+.|+...+.|
T Consensus       229 g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         229 GVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             SSSCCSTTHHHHHHHHHHHT
T ss_pred             CCccCHHHHHHHHHHHHHCc
Confidence              336666777777666665

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=0.00012  Score=55.50  Aligned_cols=92  Identities=15%  Similarity=0.061  Sum_probs=48.6

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-----hhHHHHHHH
Q 038522          405 SLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-----AEHFSCVVD  479 (590)
Q Consensus       405 ~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~  479 (590)
                      .+...+.+.|++++|+..|++.++.+ +.+...+..+..+|.+.|++++|++.++++.+...-.+.     ..+|..+..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34555666666666666666666542 224555666666666666666666666665532100111     123444444


Q ss_pred             HHHhcCChHHHHHHHHhc
Q 038522          480 LFARRGQLESAYNMIRQM  497 (590)
Q Consensus       480 ~~~~~g~~~~A~~~~~~~  497 (590)
                      .+...+++++|++.|++.
T Consensus        88 ~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHH
Confidence            555555555555555544

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.79  E-value=8.3e-06  Score=63.64  Aligned_cols=86  Identities=14%  Similarity=0.045  Sum_probs=59.3

Q ss_pred             hcCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHH----------hcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 038522          483 RRGQLESAYNMIRQM-NIKP-TASLWSAILGACS----------IYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAA  550 (590)
Q Consensus       483 ~~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~----------~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  550 (590)
                      +.+.+++|++.|++. ...| ++.++..+..++.          ..+.+++|+..++++++++|+++.+|..++.+|...
T Consensus         9 r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            334445555555554 2223 3344444444443          234567899999999999999999999999999887


Q ss_pred             CC-----------hHHHHHHHHHhhhcCC
Q 038522          551 GA-----------WDNARKTRKLMEERSL  568 (590)
Q Consensus       551 g~-----------~~~A~~~~~~~~~~~~  568 (590)
                      |+           +++|.+.|++..+..+
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~P  117 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQP  117 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccCC
Confidence            64           6889999988877554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.66  E-value=5.2e-05  Score=65.51  Aligned_cols=126  Identities=12%  Similarity=-0.031  Sum_probs=69.8

Q ss_pred             HhcCCchHHHHHHHHHHHcCCCC-cHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChH
Q 038522          411 AKHGYGHEAIELYKKMKHEGMVP-NDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLE  488 (590)
Q Consensus       411 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~  488 (590)
                      .+.|++++|+..+++.++.  .| |...+..+...++..|++++|.+.++...+.   .|+ ...+..+...+...+..+
T Consensus         7 L~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence            3457777777777777664  44 5666677777777777777777777777643   444 333333444444334444


Q ss_pred             HHHHHHHhc--CCCCC-HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHH
Q 038522          489 SAYNMIRQM--NIKPT-ASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYV  541 (590)
Q Consensus       489 ~A~~~~~~~--~~~p~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~  541 (590)
                      ++..-....  -.+|+ ...+......+...|+.++|.+.++++.+..|..+..+.
T Consensus        82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~  137 (264)
T d1zbpa1          82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  137 (264)
T ss_dssp             HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence            333322222  11221 222233344455667777777777777776665555443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=6e-05  Score=72.56  Aligned_cols=259  Identities=8%  Similarity=-0.026  Sum_probs=134.5

Q ss_pred             HHHHHHHhcc--CCC-ccchHHHHHHHHhcCCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHH
Q 038522          285 SAYQLYRSML--KTD-IISCTALISGFARDDNHSKEAFDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAF  361 (590)
Q Consensus       285 ~a~~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  361 (590)
                      +|.+.|++..  +|+ ...+..+...+...++ +++|   +++++..  .|+... ..-+....-...+..+...++...
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~-l~ea---ye~~i~~--dp~~a~-~~~~e~~Lw~~~y~~~ie~~r~~~   76 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQA-LQDL---YQKMLVT--DLEYAL-DKKVEQDLWNHAFKNQITTLQGQA   76 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHH-HHHH---HHHHHHH--CHHHHH-HHTHHHHHHHHHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHch-HHHH---HHHHHHc--ChhhHH-HHhHHHHHHHHHHHHHHHHHHHhc
Confidence            5667777663  333 3455556666666666 6655   5665543  222111 000000000112334455555555


Q ss_pred             HhCCCcchhHHHHH--HHHHHhcCChHHHHHHHHhcCC---CCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHH
Q 038522          362 KYQSSYDAAVGNAL--IDMYAKSGEIADANRAFDEMGD---KNVISWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDV  436 (590)
Q Consensus       362 ~~~~~~~~~~~~~l--~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  436 (590)
                      +....++..-....  ...+...+.++.|+..+....+   ++...+..+...+.+.|+.+.|...+++....  .| ..
T Consensus        77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~  153 (497)
T d1ya0a1          77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QH  153 (497)
T ss_dssp             SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------CCHHHHH--HH-HH
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HH
Confidence            44433333222221  2223345667777777766543   34556777888888999999999888776642  12 35


Q ss_pred             HHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCC-hhHHHHHHHHHHhcCChHHHHHHHHhc--CCCCCHhHHHHHHHHH
Q 038522          437 TFLSLLFACSHTGLTCEGWELFTDMINKYRILPR-AEHFSCVVDLFARRGQLESAYNMIRQM--NIKPTASLWSAILGAC  513 (590)
Q Consensus       437 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~--~~~p~~~~~~~l~~~~  513 (590)
                      ++..+...+...|++++|...|++..+.   .|+ ...|+.|...+...|+..+|+..|.+.  -.+|.+.++..|...+
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l---~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQL---VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHH---CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence            6777888889999999999999999965   565 679999999999999999999999988  3456777888888776


Q ss_pred             HhcCCchHHHHHHHHHhcCCCCC---cchHHHHHHHHHhcCChHHHHHHHHHh
Q 038522          514 SIYGNTSLGELAARNLFDMEPEK---SVNYVVLSNIYTAAGAWDNARKTRKLM  563 (590)
Q Consensus       514 ~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~  563 (590)
                      .+..+...+       .+..+..   ...+..+...+...+..++..++.+++
T Consensus       231 ~~~~~~~~~-------~~~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~~~~  276 (497)
T d1ya0a1         231 SKALESRDE-------VKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSPLREKL  276 (497)
T ss_dssp             HHHTTSCCC-------CCSSCCHHHHHHHHHHHHHHHHHTCCGGGHHHHHHHH
T ss_pred             HHhhhhhhh-------hccccccchHHHHHHHHHHHHHhCCchhhHHHHHHHH
Confidence            544332111       1111111   123444555566777777766665544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=9.6e-05  Score=52.39  Aligned_cols=67  Identities=16%  Similarity=-0.071  Sum_probs=56.3

Q ss_pred             HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCC-------cchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          503 ASLWSAILGACSIYGNTSLGELAARNLFDMEPEK-------SVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       503 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      ...+-.+...+.+.|+++.|+..+++++++.|.+       ..++..|+.+|.+.|++++|+..++++.+..+.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~   78 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE   78 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC
Confidence            3445577888999999999999999999765533       456899999999999999999999999887654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.44  E-value=0.00041  Score=54.56  Aligned_cols=92  Identities=12%  Similarity=0.018  Sum_probs=58.7

Q ss_pred             HhhccCChHHHHHHHHHHHhhcCCCCC----------hhHHHHHHHHHHhcCChHHHHHHHHhc--------CCCCC---
Q 038522          444 ACSHTGLTCEGWELFTDMINKYRILPR----------AEHFSCVVDLFARRGQLESAYNMIRQM--------NIKPT---  502 (590)
Q Consensus       444 ~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~p~---  502 (590)
                      .+...|++++|++.|++..+-..-.|+          ...|+.+..+|...|++++|++.+++.        ...++   
T Consensus        18 ~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~   97 (156)
T d2hr2a1          18 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK   97 (156)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccc
Confidence            344556666666666666543222222          235666777777777777777766664        11221   


Q ss_pred             --HhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCC
Q 038522          503 --ASLWSAILGACSIYGNTSLGELAARNLFDMEPE  535 (590)
Q Consensus       503 --~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~  535 (590)
                        ...+..+..+|...|++++|+..|++++++.|.
T Consensus        98 ~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~  132 (156)
T d2hr2a1          98 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEE  132 (156)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence              124566778888999999999999998877653

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.37  E-value=0.00015  Score=62.56  Aligned_cols=122  Identities=16%  Similarity=0.078  Sum_probs=87.8

Q ss_pred             hhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHHHHHHHHhc-CCCCCH-hHHHHHHHHHHhcCCchHH
Q 038522          445 CSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLESAYNMIRQM-NIKPTA-SLWSAILGACSIYGNTSLG  522 (590)
Q Consensus       445 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~p~~-~~~~~l~~~~~~~~~~~~a  522 (590)
                      ..+.|++++|+..+++..+.  .+.+...+..+...|+..|++++|...++.. ...|+. ..+..+...+...+..+++
T Consensus         6 aL~~G~l~eAl~~l~~al~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence            45679999999999999974  2446889999999999999999999999998 666654 4445555554444444333


Q ss_pred             HHHHHHHhc-CCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          523 ELAARNLFD-MEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       523 ~~~~~~~~~-~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      ......... ..|++...+...+..+...|++++|.+.++++.+...
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p  130 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQ  130 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence            332222222 2344445566678889999999999999999887543

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.35  E-value=0.0017  Score=51.95  Aligned_cols=111  Identities=13%  Similarity=0.038  Sum_probs=74.6

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh
Q 038522          404 TSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR  483 (590)
Q Consensus       404 ~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  483 (590)
                      ..........|++++|.+.|.+....  .+...        +......+.+...-..+...     ....+..+...+.+
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~~~-----~~~a~~~la~~~~~   79 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALVED-----KVLAHTAKAEAEIA   79 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHHHH-----HHHHHHHHHHHHHH
Confidence            33456778899999999999999874  33221        01111111122222222221     23456678888888


Q ss_pred             cCChHHHHHHHHhc-CCCC-CHhHHHHHHHHHHhcCCchHHHHHHHHH
Q 038522          484 RGQLESAYNMIRQM-NIKP-TASLWSAILGACSIYGNTSLGELAARNL  529 (590)
Q Consensus       484 ~g~~~~A~~~~~~~-~~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~  529 (590)
                      .|++++|+..++++ ...| +...|..++.++...|+.++|++.|+++
T Consensus        80 ~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          80 CGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            89999998888888 4444 6778888888888889999998888887

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.98  E-value=0.031  Score=39.81  Aligned_cols=141  Identities=11%  Similarity=0.073  Sum_probs=98.5

Q ss_pred             HHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHhcCChHH
Q 038522          410 YAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFARRGQLES  489 (590)
Q Consensus       410 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  489 (590)
                      +.-.|..++..+++.+....   .+..-|+.++--....-+-+...++++.+-+-+.+.              .+++...
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls--------------~C~Nlk~   74 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKS   74 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCch--------------hhhcHHH
Confidence            34467778888888887763   344455555555555556666777777775543322              2344444


Q ss_pred             HHHHHHhcCCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHhhhcCCc
Q 038522          490 AYNMIRQMNIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTAAGAWDNARKTRKLMEERSLR  569 (590)
Q Consensus       490 A~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  569 (590)
                      ...-+-.++  .+...++..+.....+|+-++-.++++.+++.+..+|.....++.+|.+.|...++.+++.+.-++|++
T Consensus        75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence            444444442  233455666777788999999999999988776668999999999999999999999999999999875

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=96.91  E-value=0.16  Score=47.05  Aligned_cols=261  Identities=8%  Similarity=0.004  Sum_probs=123.8

Q ss_pred             HHHhccCCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHH
Q 038522          239 LRASVGGIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEA  318 (590)
Q Consensus       239 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a  318 (590)
                      +..+.+.++++.....+     ...+.+...-..+..+....|+.+.|...+..+-..+.             .. .+.+
T Consensus        79 l~~L~~~~~w~~~~~~~-----~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-------------~~-p~~c  139 (450)
T d1qsaa1          79 VNELARREDWRGLLAFS-----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-------------SQ-PNAC  139 (450)
T ss_dssp             HHHHHHTTCHHHHHHHC-----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-------------CC-CTHH
T ss_pred             HHHHHhccCHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-------------CC-chHH
Confidence            34455555554433222     12233444444566667777777777766655511100             01 3333


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCC
Q 038522          319 FDLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDK  398 (590)
Q Consensus       319 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  398 (590)
                      -.+|..+...| .++...+-.-+......|+...+..+...+-    ..........+.....   ...+........ +
T Consensus       140 ~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~----~~~~~~~~a~~~l~~~---p~~~~~~~~~~~-~  210 (450)
T d1qsaa1         140 DKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMP----ADYQTIASAIISLANN---PNTVLTFARTTG-A  210 (450)
T ss_dssp             HHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCC----GGGHHHHHHHHHHHHC---GGGHHHHHHHSC-C
T ss_pred             HHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCC----hhHHHHHHHHHHHHhC---hHhHHHHHhcCC-C
Confidence            44444444333 2222222233333333445554444433211    1112222333333322   222222222222 2


Q ss_pred             CcchHHHHHHHHHh--cCCchHHHHHHHHHHHcCCCCcHHHHH----HHHHHhhccCChHHHHHHHHHHHhhcCCCCChh
Q 038522          399 NVISWTSLIAGYAK--HGYGHEAIELYKKMKHEGMVPNDVTFL----SLLFACSHTGLTCEGWELFTDMINKYRILPRAE  472 (590)
Q Consensus       399 ~~~~~~~l~~~~~~--~~~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  472 (590)
                      +......+..++.+  ..+.+.+...+....... ..+.....    .+.......+..+.+...+......   ..+..
T Consensus       211 ~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~  286 (450)
T d1qsaa1         211 TDFTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTS  286 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHH
T ss_pred             ChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchH
Confidence            22222333333332  346777777777766542 22222111    2222333455566777777666543   33444


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHhcCCCCC--HhHHHHHHHHHHhcCCchHHHHHHHHHhc
Q 038522          473 HFSCVVDLFARRGQLESAYNMIRQMNIKPT--ASLWSAILGACSIYGNTSLGELAARNLFD  531 (590)
Q Consensus       473 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~p~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  531 (590)
                      .....+....+.+++..+...+..+...|.  ..-.--+.+++...|+.+.|...+..+..
T Consensus       287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~  347 (450)
T d1qsaa1         287 LIERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence            445555556667788888888887732332  22224455677778888888888887764

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.38  E-value=0.0043  Score=44.98  Aligned_cols=33  Identities=18%  Similarity=0.242  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCc
Q 038522          505 LWSAILGACSIYGNTSLGELAARNLFDMEPEKS  537 (590)
Q Consensus       505 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~  537 (590)
                      .+-.+..+|.+.|+++.|+..++++++.+|.+.
T Consensus        75 ~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~  107 (124)
T d2pqrb1          75 CLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK  107 (124)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence            334444445555555555555555555555443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.94  E-value=0.03  Score=41.87  Aligned_cols=82  Identities=6%  Similarity=-0.122  Sum_probs=49.1

Q ss_pred             CChHHHHHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCCCCcchHHHHHHHHHh----cCChHHH
Q 038522          485 GQLESAYNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAARNLFDMEPEKSVNYVVLSNIYTA----AGAWDNA  556 (590)
Q Consensus       485 g~~~~A~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A  556 (590)
                      .+.++|++++++.-..-++.....|...|..    ..+.++|...++++.+..  ++.+...|+.+|..    ..+.++|
T Consensus        37 ~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A  114 (133)
T d1klxa_          37 INKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQA  114 (133)
T ss_dssp             SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHH
T ss_pred             cCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHH
Confidence            3455555555554111233334444444432    346677777777777654  35667777777776    4578888


Q ss_pred             HHHHHHhhhcCC
Q 038522          557 RKTRKLMEERSL  568 (590)
Q Consensus       557 ~~~~~~~~~~~~  568 (590)
                      .+++++..+.|.
T Consensus       115 ~~~~~~Aa~~G~  126 (133)
T d1klxa_         115 VKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCC
Confidence            888888777664

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.99  E-value=0.37  Score=34.21  Aligned_cols=65  Identities=9%  Similarity=0.030  Sum_probs=46.7

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCC
Q 038522          402 SWTSLIAGYAKHGYGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRIL  468 (590)
Q Consensus       402 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  468 (590)
                      .++..+..+.++|+-+.-.++++.+.+. -+|++.....+..+|.+.|+..++-+++.+.-++ |++
T Consensus        88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~-G~K  152 (161)
T d1wy6a1          88 HVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK-GEK  152 (161)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-hHH
Confidence            4455566777778777777787776664 3777777778888888888888888888877766 543

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.50  E-value=0.17  Score=36.40  Aligned_cols=68  Identities=10%  Similarity=0.011  Sum_probs=46.5

Q ss_pred             CCHhHHHHHHHHHHhc---CCchHHHHHHHHHhcCCCCCc-chHHHHHHHHHhcCChHHHHHHHHHhhhcCC
Q 038522          501 PTASLWSAILGACSIY---GNTSLGELAARNLFDMEPEKS-VNYVVLSNIYTAAGAWDNARKTRKLMEERSL  568 (590)
Q Consensus       501 p~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  568 (590)
                      |...+--.+.++..+.   ++.++++.+++.+.+.+|.+. ..++.|+.+|.+.|++++|++.++.+.+..+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP  104 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHER  104 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence            4444555555555544   345677888888877777553 5677888888888888888888887777554

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.05  E-value=0.55  Score=34.47  Aligned_cols=111  Identities=10%  Similarity=-0.026  Sum_probs=66.4

Q ss_pred             CchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHh----cCChHHH
Q 038522          415 YGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVDLFAR----RGQLESA  490 (590)
Q Consensus       415 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A  490 (590)
                      ++++|+++|++..+.|....   ...+  +.....+.++|.+.+++..+. |   ++.....|...|..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~~g~~~a---~~~l--~~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMFG---CLSL--VSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTTH---HHHH--HTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCChhh---hhhh--ccccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence            56677777777777653221   1112  223445677788887777654 3   34445555555544    3567888


Q ss_pred             HHHHHhcCCCCCHhHHHHHHHHHHh----cCCchHHHHHHHHHhcCCC
Q 038522          491 YNMIRQMNIKPTASLWSAILGACSI----YGNTSLGELAARNLFDMEP  534 (590)
Q Consensus       491 ~~~~~~~~~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p  534 (590)
                      .++|++.-..-++.....|...|..    ..+.++|...++++.+...
T Consensus        79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            8888877112244455555555543    4577888888888876654

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=93.24  E-value=3  Score=38.06  Aligned_cols=415  Identities=9%  Similarity=-0.014  Sum_probs=208.4

Q ss_pred             cccccCChHHHHHHhhhCCCCCCCcccHHHHHHHhhccc--chhHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhcCChH
Q 038522            6 ANFKTGQLKQALKFSLSCPDTLLDPSTYMSLLQFCIDKK--AERQAHLIHAHIITNGYES-NLHLSTKVIIFYAKVGDVL   82 (590)
Q Consensus         6 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~   82 (590)
                      ...++|+..++..+...+... | ...|...-..-...+  ...++..+   +.+..-.| ........+..+.+.++++
T Consensus        15 ~a~~~~~~~~~~~~~~~L~dy-p-L~pYl~~~~l~~~~~~~~~~~i~~F---l~~~p~~P~~~~lr~~~l~~L~~~~~w~   89 (450)
T d1qsaa1          15 QAWDNRQMDVVEQMMPGLKDY-P-LYPYLEYRQITDDLMNQPAVTVTNF---VRANPTLPPARTLQSRFVNELARREDWR   89 (450)
T ss_dssp             HHHHTTCHHHHHHHSGGGTTS-T-THHHHHHHHHHHTGGGCCHHHHHHH---HHHCTTCHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCCCHHHHHHHHhhhcCC-C-CHHHHHHHHHHhccccCCHHHHHHH---HHHCCCChhHHHHHHHHHHHHHhccCHH
Confidence            456788999988888887543 3 445555544433333  33333333   33322122 2223344566788899998


Q ss_pred             HHHHHhccCCCCCccchHHHHHHHHhcCChHHHHHHHHHHHHcCC-CCCHhhHHHHHHHHhccCchhhHHHHHHHHHhcC
Q 038522           83 SARKAFDRMPERNVVSWTAMISGYAQNGYDENALLVFSAMLRSGV-RANQFTYSSALRACARMRWLQGGRMIQGSIQKGR  161 (590)
Q Consensus        83 ~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~  161 (590)
                      .....+...+ .+...-.....+....|+...|...+..+-..|. .|+                  ....++..+.+.|
T Consensus        90 ~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~~p~------------------~c~~l~~~~~~~~  150 (450)
T d1qsaa1          90 GLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKSQPN------------------ACDKLFSVWRASG  150 (450)
T ss_dssp             HHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSCCCT------------------HHHHHHHHHHHTT
T ss_pred             HHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCCch------------------HHHHHHHHHHhcC
Confidence            8887665432 2333334567788889999999888777755442 222                  2233444444443


Q ss_pred             CCCchHHHHHHHHHHHhcCChHHHHHHHhccCCCCcchHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCChhhHHHHHHH
Q 038522          162 FVENLFVKSALLDLYAKCGWIEDAWILFERIERKDVVSWNAMIGGLAMQGFNDDSFWLFRSMMRQGMKPDCFTLGSILRA  241 (590)
Q Consensus       162 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~  241 (590)
                      . .+...+-.-+......|+...|..+...+...........+....   ++..+......   .  .++......+..+
T Consensus       151 ~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~---~p~~~~~~~~~---~--~~~~~~~~~~~~~  221 (450)
T d1qsaa1         151 K-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLAN---NPNTVLTFART---T--GATDFTRQMAAVA  221 (450)
T ss_dssp             C-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHH---CGGGHHHHHHH---S--CCCHHHHHHHHHH
T ss_pred             C-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHh---ChHhHHHHHhc---C--CCChhhhHHHHHH
Confidence            2 333344445556667789999999888876544444444444332   23333222211   1  2233322222333


Q ss_pred             hcc--CCChhHHHHHHHHHHHhCCCCChhHHHHHHHHHHhcCChHHHHHHHHhccCCCccchHHHHHHHHhcCCChHHHH
Q 038522          242 SVG--GIELMKISQIHDLIIKLGLESSNKLTGSLIDVYAKYGSIRSAYQLYRSMLKTDIISCTALISGFARDDNHSKEAF  319 (590)
Q Consensus       242 ~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~  319 (590)
                      +.+  ..+.+.+..++........... .-...+-...                           ...+...+. .+.+.
T Consensus       222 l~rla~~d~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~---------------------------a~~~~~~~~-~~~a~  272 (450)
T d1qsaa1         222 FASVARQDAENARLMIPSLAQAQQLNE-DQIQELRDIV---------------------------AWRLMGNDV-TDEQA  272 (450)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHTTCCH-HHHHHHHHHH---------------------------HHTSCSTTC-CHHHH
T ss_pred             HHHHhccChhHHHHHHHhhhhcccccH-HHHHHHHHHH---------------------------HHHHHHcCc-hHHHH
Confidence            222  2345555555555444321111 1111111111                           111111222 33444


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhchhhhHhHHHHHHHHHHhCCCcchhHHHHHHHHHHhcCChHHHHHHHHhcCCCC
Q 038522          320 DLFKDMILKKMGIDDVILCLMLNICANVASLNLGRQIHAFAFKYQSSYDAAVGNALIDMYAKSGEIADANRAFDEMGDKN  399 (590)
Q Consensus       320 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  399 (590)
                      ..+......+  .+.......+......+++..+...+..+.... .....-.--+..++...|+.+.|...|..+....
T Consensus       273 ~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~  349 (450)
T d1qsaa1         273 KWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQR  349 (450)
T ss_dssp             HHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred             HHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCC
Confidence            4444333322  222222223333344455555555554442211 1123333456677777888888888888776532


Q ss_pred             cchHHHHHHHHHhcCCchHHHHHHHHHHHcCCC--Cc-H---HHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhH
Q 038522          400 VISWTSLIAGYAKHGYGHEAIELYKKMKHEGMV--PN-D---VTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEH  473 (590)
Q Consensus       400 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~g~~--p~-~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  473 (590)
                        +|-..+.+-.-...+.-        ......  +. .   ..-...+..+...|....|...|..+...    .+...
T Consensus       350 --~fYG~LAa~~Lg~~~~~--------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~----~~~~~  415 (450)
T d1qsaa1         350 --GFYPMVAAQRIGEEYEL--------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS----KSKTE  415 (450)
T ss_dssp             --SHHHHHHHHHTTCCCCC--------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CCHHH
T ss_pred             --ChHHHHHHHHcCCCCCC--------CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC----CCHHH
Confidence              34443332221111100        000000  00 0   00112244566789999999988888753    24556


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHhcCC
Q 038522          474 FSCVVDLFARRGQLESAYNMIRQMNI  499 (590)
Q Consensus       474 ~~~l~~~~~~~g~~~~A~~~~~~~~~  499 (590)
                      ...+.....+.|.++.|+....+.+.
T Consensus       416 ~~~la~lA~~~g~~~~aI~a~~~~~~  441 (450)
T d1qsaa1         416 QAQLARYAFNNQWWDLSVQATIAGKL  441 (450)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHCCChhHHHHHHHHHHc
Confidence            66778888899999999988887753

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.95  E-value=1.3  Score=29.73  Aligned_cols=63  Identities=16%  Similarity=0.172  Sum_probs=49.7

Q ss_pred             CchHHHHHHHHHHHcCCCCcHHHHHHHHHHhhccCChHHHHHHHHHHHhhcCCCCChhHHHHHHH
Q 038522          415 YGHEAIELYKKMKHEGMVPNDVTFLSLLFACSHTGLTCEGWELFTDMINKYRILPRAEHFSCVVD  479 (590)
Q Consensus       415 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~  479 (590)
                      +.-++.+-++.+....+.|++....+.+.+|.+.+++..|..+++.++.+-+  ++...|..+++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence            3445667777788888899999999999999999999999999999987633  34556766653

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.48  E-value=4.1  Score=27.19  Aligned_cols=58  Identities=12%  Similarity=0.108  Sum_probs=41.2

Q ss_pred             ChHHHHHHHHhc---CCCCCHhHHHHHHHHHHhcCCchHHHHHHHHHhcCCCCCcchHHHH
Q 038522          486 QLESAYNMIRQM---NIKPTASLWSAILGACSIYGNTSLGELAARNLFDMEPEKSVNYVVL  543 (590)
Q Consensus       486 ~~~~A~~~~~~~---~~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l  543 (590)
                      +.-++.+-+..+   .+-|++....+.+++|.+.+++..|+.+++-+...--.+...|-.+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yi   81 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYV   81 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            334455555544   6788999999999999999999999999998874332244555544