Citrus Sinensis ID: 038527

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630
MPRNFEKSDLSWSELKDYEYKKYNQLKKGDLKVEVSETAYRCPFCRGKKETDYLYKELLQHASDVGRSRSRGAREKAQHLALEKYVSKYLVVKDRSQLEPGTSSECLKITDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEGRTRATIGVKRMGEIDNRPFLAAAKAKFPAEEADEKGLELCSLWEEYLRDPNWHPFKILVDKEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALAQSEMNQYNPSGRYTIPELWNFKENRKATLKEGAIHLLNQWRVNRKRKRN
cccccccccccHHHHHHHHHHHHHHHcccccEEEEcccEEEcccccccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccHHHHHHHHHccccccccccccccccccEEEEEEEcccHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEccccccccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHccc
cccccccccccHHHHHHHHHHHHHHHHcccEEEEEcccEEEcccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccEEEcccEEEEEEccccccccccEccccHHHHHHHHHHcccccEEEEEEEccccccEEEEEEEcccccHHHHHHHHHHHHHHcccccHHHHHcccccccEEEEEEEHccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccEEEEEcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccHHHcccccccccHHHHHHHHHHHHHHHHHHccc
mprnfeksdlswsELKDYEYKKynqlkkgdlkvevsetayrcpfcrgkkeTDYLYKELLQHASdvgrsrsrgAREKAQHLALEKYVSKYLVVkdrsqlepgtsseclkitdhqpdqllvypwVGIVANIktqrgedgryvgesgsKLRDEfrskgfnplkvhplwsrrghsgfAVVEFYKDWAGFKNAIMFEKSFevdhhgkkdFYAVKNLGDklygwiardddynsksligdhlrkngdlktvsgkeaedqrkTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEGRTRATIGvkrmgeidnrpflaaakakfpaeeadeKGLELCSLWEeylrdpnwhpfkilvdkegnckeiIDVEDQKLKSLKNEYGEQVHNAVALAQSEmnqynpsgrytipelwnfkenRKATLKEGAIHLLNQWRVNRKRKRN
mprnfeksdlswseLKDYEYKKynqlkkgdlkvevsetayrcpfcrgkKETDYLYKELLQHasdvgrsrsrgAREKAQHLALEKYVSKYLVVKDRSQLEPGTSSECLKITDHQPDQLLVYPWVGIVANiktqrgedgryvgeSGSKLRDEFRSKgfnplkvhplwsrrghSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSksligdhlrkngdlktvsgkeaedqrktstlvtnltrtlevkdmrykEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQlqyreakneterkklhsekimneratleqkkadeKVWRLAQVHKEEKEKLRRKIIElqkgldakqalELEIEQKRGTIQVMKHMreenvevqEKMDAIIKEikekegemdvVEALNQSlivrerksndelqEARKELinslkegrtratigvkrmgeidnrPFLAAAKAKFPAEEADEKGLELCSLWEEYLRDPNWHPFKILVDKEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALAQSEMNQYNPSGRYTIPELWNFKENRKATLKEGaihllnqwrvnrkrkrn
MPRNFEKSDLSWSELKDYEYKKYNQLKKGDLKVEVSETAYRCPFCRGKKETDYLYKELLQHASDVGRSRSRGAREKAQHLALEKYVSKYLVVKDRSQLEPGTSSECLKITDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHkeekeklrrkiielQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAiikeikekeGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEGRTRATIGVKRMGEIDNRPFLaaakakfpaeeadekGLELCSLWEEYLRDPNWHPFKILVDKEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALAQSEMNQYNPSGRYTIPELWNFKENRKATLKEGAIHLLNQWRVNRKRKRN
*************ELKDYEYKKYNQLKKGDLKVEVSETAYRCPFCRGKKETDYLYKELLQH*****************HLALEKYVSKYLVVKD***********CLKITDHQPDQLLVYPWVGIVANIKTQR*********************GFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIG**************************VTNLTRTLEVKDMRYKEMEMKYLETSTYLD*******************************************************************************************W****************IIEL********************************************************************************************IGVK**GEIDNRPFLAAAKA********EKGLELCSLWEEYLRDPNWHPFKILVDKEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALA******YNPSGRYTIPELWNFKENRKATLKEGAIHLLNQWRV*******
***************KDYEYKKYNQLKKGDLKVEVSETAYRCPFCRGKKETDYLYKELLQH*****************HLALEKYV****************************DQLLVYPWVGIVANIKTQRG**********SKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDD*****************KT*****************************************************************************************************************************************************************************************************************************************************************************************ELCSLWEE*LR***WH**KILVDKEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALAQSEMNQYNPSGRYTIPELWNFKENRKATLKEGAIHLLNQW**N******
**********SWSELKDYEYKKYNQLKKGDLKVEVSETAYRCPFCRGKKETDYLYKELLQHAS**************QHLALEKYVSKYLVVKDRSQLEPGTSSECLKITDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIGDHLRKNGDLKT***********TSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEGRTRATIGVKRMGEIDNRPFLAAAKAK*********GLELCSLWEEYLRDPNWHPFKILVDKEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALAQSEMNQYNPSGRYTIPELWNFKENRKATLKEGAIHLLNQWRVNRKRKRN
*********LSWSELKDYEYKKYNQLKKGDLKVEVSETAYRCPFCRGKKETDYLYKELLQHASDVGRSRSRGAREKAQHLALEKYVSKYLVVK********************PDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERATLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMREENVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEGRTRATIGVKRMGEIDNRPFLAAAKAKFPAEEADEKGLELCSLWEEYLRDPNWHPFKILVDKEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALAQSEMNQYNPSGRYTIPELWNFKENRKATLKEGAIHLLNQWRVNRK****
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MPRNFEKSDLSWSELKDYEYKKYNQLKKGDLKVEVSETAYRCPFCRGKKETDYLYKELLQHASDVGRSRSRGAREKAQHLALEKYVSKYLVVKDRSQLEPGTSSECLKITDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTxxxxxxxxxxxxxxxxxxxxxAHDHFQKIxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxLHSEKIMNERATLEQKKADEKVWRLxxxxxxxxxxxxxxxxxxxxxxxxxxxxELEIEQKRGTIQVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATIGVKRMGEIDNRPFLAAAKAKFPAEEADEKGLELCSLWEEYLRDPNWHPFKILVDKEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALAQSEMNQYNPSGRYTIPELWNFKENRKATLKEGAIHLLNQWRVNRKRKRN
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
297746065626 unnamed protein product [Vitis vinifera] 0.974 0.980 0.581 0.0
359478631713 PREDICTED: uncharacterized protein LOC10 0.974 0.861 0.581 0.0
255584877640 conserved hypothetical protein [Ricinus 0.976 0.960 0.536 0.0
449517583 754 PREDICTED: LOW QUALITY PROTEIN: uncharac 0.838 0.700 0.592 0.0
449455188709 PREDICTED: uncharacterized LOC101207144 0.847 0.753 0.586 0.0
449475229 755 PREDICTED: uncharacterized protein LOC10 0.838 0.699 0.590 1e-180
225449483641 PREDICTED: uncharacterized protein LOC10 0.958 0.942 0.536 1e-180
356539854640 PREDICTED: uncharacterized protein LOC10 0.979 0.964 0.5 1e-173
356523864654 PREDICTED: uncharacterized protein LOC10 0.971 0.935 0.496 1e-167
356499107 1172 PREDICTED: uncharacterized protein LOC10 0.960 0.516 0.504 1e-165
>gi|297746065|emb|CBI16121.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  679 bits (1753), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/623 (58%), Positives = 471/623 (75%), Gaps = 9/623 (1%)

Query: 10  LSWSELKDYEYKKYNQLKKGDLKVEVSETAYRCPFCRGKKETDYLYKELLQHASDVGRSR 69
           +S SEL DY Y+ Y +L+ G ++V++S+T +RCP+C  K + DY  +ELLQHAS VGR  
Sbjct: 11  ISESELDDYRYRYYRELQNGSVRVKISDTTFRCPYCPSKDDRDYRCRELLQHASRVGRDS 70

Query: 70  SRG-AREKAQHLALEKYVSKYLVVKDRSQLEPGTSSECLKITDHQPDQLLVYPWVGIVAN 128
             G  +EKA+HLAL KY+ KYL  K      P ++ +    T +  D   V+PWVGI+AN
Sbjct: 71  GSGDVKEKARHLALMKYLDKYLDTKQ----SPASTKDTESSTANDADGHFVWPWVGIIAN 126

Query: 129 IKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNA 188
           I  QR  DGRYVGESG+K+++   ++GFNP +V+PLW+ RGHSGFA+VEF KDW GF NA
Sbjct: 127 IPVQRI-DGRYVGESGTKIKEYLAAQGFNPSRVNPLWNHRGHSGFAIVEFDKDWPGFTNA 185

Query: 189 IMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIGDHLRKNGDLKTVSGKE 248
           I F+K+FE DH GK+D+   K LGDKLYGW+AR+DDY SKS+ G+HL K+ DLKTV   +
Sbjct: 186 IAFDKAFEADHRGKRDWKTAKRLGDKLYGWVAREDDYRSKSIFGEHLSKSWDLKTVEEIQ 245

Query: 249 AEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTMEQMDEMNKSRNEEIRKM 308
           AED+RKT+ LV+NLT  +EVK MR KE+E KY ETS  L   M Q D M+++ NEEI K+
Sbjct: 246 AEDKRKTTKLVSNLTNVIEVKTMRLKEIESKYAETSISLSNVMLQKDAMHQAFNEEITKI 305

Query: 309 QQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNETERKKLHSEKIMNERA 368
           QQ A DHF+KI LEH K+T QLEAQK +LE+ EK+L+ R+A+NE+ER+K+++EK MN +A
Sbjct: 306 QQQARDHFEKISLEHAKSTMQLEAQKKELEKREKELEKRKAQNESERRKIYNEKKMNMKA 365

Query: 369 TLEQKKADEKVWRLAQVHKEEKEKLRRKIIELQKGLDAKQALELEIEQKRGTIQVMKHMR 428
           T+EQKKADE V RLA+  + EKE L ++IIEL++ LDAKQALELEIE+ RG +QVMKHM 
Sbjct: 366 TIEQKKADENVLRLAEDQRREKENLHKRIIELERKLDAKQALELEIERMRGALQVMKHMG 425

Query: 429 EE-NVEVQEKMDAIIKEIKEKEGEMDVVEALNQSLIVRERKSNDELQEARKELINSLKEG 487
           E  +++++ KMD I +E+KEKE E+D +EALNQ+L+V+ERKSNDELQEARKELI+  K  
Sbjct: 426 ENGDMDMKIKMDEIQEELKEKEEELDDLEALNQALVVKERKSNDELQEARKELISYFKGR 485

Query: 488 RTRATIGVKRMGEIDNRPFLAAAKAKFPAEEADEKGLELCSLWEEYLRDPNWHPFKILVD 547
             RA I VK+MG++D +PF  A K K+  EEA+EK LE CSLWE+ L D +WHPFK++ D
Sbjct: 486 SGRAFIAVKQMGDLDTKPFQKAMKRKYSEEEANEKALEWCSLWEQNLTDSSWHPFKVITD 545

Query: 548 KEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALAQSEMNQYNPSGRYTIPELWNFKENRK 607
           K GNCKEIID ED++LK L+NEYG++V+ AV  A  EMN+YNPSGRY + ELWNFKE RK
Sbjct: 546 K-GNCKEIIDEEDERLKDLQNEYGDEVYMAVTDALKEMNEYNPSGRYVVSELWNFKEGRK 604

Query: 608 ATLKEGAIHLLNQWRVNRKRKRN 630
           ATL+EG   +L QWR++ KRKR 
Sbjct: 605 ATLREGVEDILKQWRLH-KRKRT 626

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359478631|ref|XP_002280898.2| PREDICTED: uncharacterized protein LOC100260350 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255584877|ref|XP_002533154.1| conserved hypothetical protein [Ricinus communis] gi|223527049|gb|EEF29235.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|449517583|ref|XP_004165825.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228650 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449455188|ref|XP_004145335.1| PREDICTED: uncharacterized LOC101207144 [Cucumis sativus] Back     alignment and taxonomy information
>gi|449475229|ref|XP_004154410.1| PREDICTED: uncharacterized protein LOC101207144 [Cucumis sativus] Back     alignment and taxonomy information
>gi|225449483|ref|XP_002278500.1| PREDICTED: uncharacterized protein LOC100244410 [Vitis vinifera] gi|296086223|emb|CBI31664.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356539854|ref|XP_003538408.1| PREDICTED: uncharacterized protein LOC100812353 [Glycine max] Back     alignment and taxonomy information
>gi|356523864|ref|XP_003530554.1| PREDICTED: uncharacterized protein LOC100806029 [Glycine max] Back     alignment and taxonomy information
>gi|356499107|ref|XP_003518385.1| PREDICTED: uncharacterized protein LOC100806426 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query630
TAIR|locus:2014754736 FDM4 "AT1G13790" [Arabidopsis 0.815 0.698 0.491 1.7e-150
TAIR|locus:2114560647 IDN2 "AT3G48670" [Arabidopsis 0.980 0.955 0.446 4.2e-134
TAIR|locus:2200487634 FDM1 "factor of DNA methylatio 0.976 0.970 0.378 1.9e-106
TAIR|locus:2825160634 FDM5 "factor of DNA methylatio 0.973 0.966 0.373 6.7e-104
TAIR|locus:2126081635 FDM2 "AT4G00380" [Arabidopsis 0.974 0.966 0.374 7.9e-101
TAIR|locus:2148323561 AT5G59390 [Arabidopsis thalian 0.823 0.925 0.382 2.2e-96
TAIR|locus:2125078554 AT4G01180 "AT4G01180" [Arabido 0.807 0.918 0.380 1.3e-91
TAIR|locus:2045121179 AT2G16490 "AT2G16490" [Arabido 0.119 0.418 0.434 1.3e-14
TAIR|locus:2045412 1333 AT2G32240 "AT2G32240" [Arabido 0.536 0.253 0.234 3.6e-05
ZFIN|ZDB-GENE-050208-317 1422 tnks1bp1 "tankyrase 1 binding 0.366 0.162 0.236 0.00035
TAIR|locus:2014754 FDM4 "AT1G13790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1264 (450.0 bits), Expect = 1.7e-150, Sum P(2) = 1.7e-150
 Identities = 256/521 (49%), Positives = 346/521 (66%)

Query:   115 DQLLVYPWVGIVANIKTQRGEDGR-YVGESGSKLRDEFRSKGFNPLKVHPLWSRR-GHSG 172
             DQ+ V+PW GI+AN+K    E  R Y GESGSK+R++   KGFNP KV PLW+ R G +G
Sbjct:   216 DQMYVHPWKGILANMKRTFNEKTRKYAGESGSKIREDLIKKGFNPHKVTPLWNGRLGFTG 275

Query:   173 FAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIG 232
             FA+V+F K+W GF+NA MF+K FEV   GK+D    ++ GDKLYGW+A+ DDY S++ IG
Sbjct:   276 FAIVDFGKEWEGFRNATMFDKHFEVSQCGKRDHDLTRDPGDKLYGWVAKQDDYYSRTAIG 335

Query:   233 DHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKYLETSTYLDLTME 292
             DHLRK GDLK+VSGKEAEDQRKT TLV+NL  TL  K    ++ME  Y +TS+ L+  M+
Sbjct:   336 DHLRKQGDLKSVSGKEAEDQRKTFTLVSNLENTLVTKSDNLQQMESIYKQTSSVLEKRMK 395

Query:   293 QMDEMNKSRNEEIRKMQQSAHDHFQKIYLEHEKATSQLEAQKMQLEEHEKQLQYREAKNE 352
             + DEM  + NE++  MQQ+A D+   IY EHEKA+  LEAQ+ + E+ E  L   +AKN+
Sbjct:   396 EKDEMINTHNEKMSIMQQTARDYLASIYEEHEKASQHLEAQRKEYEDRENYLDKCQAKNK 455

Query:   353 TERKKLHSEKIMNERATLEQKKADEKVWRLAQVHXXXXXXXXXXXXXXQKGLDAKQALEL 412
             TER+KL  +K  N  AT EQ KADE + RLA+                ++ +DA+QALEL
Sbjct:   456 TERRKLQWQKHKNLMATQEQNKADEDMMRLAEQQQREKDELRKQVRELEEKIDAEQALEL 515

Query:   413 EIEQKRGTIQVMKHMRE---ENVEVQEKMDAXXXXXXXXXGEMDVVEALNQSLIVRERKS 469
             EIE+ RG +QVM HM+E   E+ +++E ++           + +  E+L Q+L+V+   +
Sbjct:   516 EIERMRGDLQVMGHMQEGEGEDSKIKEMIEKTKEELKEKEEDWEYQESLYQTLVVKHGYT 575

Query:   470 NDELQEARKELINSLKEGRTRATIGVKRMGEIDNRPFLXXXXXXXXXXXXXXXGLELCSL 529
             NDELQ+ARK LI S++E  TRA IGVKRMG +D  PF                  ELCSL
Sbjct:   576 NDELQDARKALIRSMRELTTRAYIGVKRMGALDETPFKKVAKEKYPAVEADKKAEELCSL 635

Query:   530 WEEYLRDPNWHPFKILVDKEGNCKEIIDVEDQKLKSLKNEYGEQVHNAVALAQSEMNQYN 589
             WEE+L D  WHP K+ V+K+G  KE ++ ED+KL+ L+ E GE+V+ AV  A  E N+YN
Sbjct:   636 WEEHLGDSAWHPIKV-VEKDGIAKEELNEEDEKLQELRKELGEEVYAAVTQALKERNEYN 694

Query:   590 PSGRYTIPELWNFKENRKATLKEGAIHLLNQWRVNR-KRKR 629
              SGRY +PELWNFK+NRKA++KEG ++L+N W+  + K KR
Sbjct:   695 GSGRYIVPELWNFKQNRKASIKEGVVYLVNSWKQKKPKPKR 735
GO:0003674 "molecular_function" evidence=ND
GO:0080188 "RNA-directed DNA methylation" evidence=IGI
GO:0048451 "petal formation" evidence=RCA
GO:0048453 "sepal formation" evidence=RCA
TAIR|locus:2114560 IDN2 "AT3G48670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2200487 FDM1 "factor of DNA methylation 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2825160 FDM5 "factor of DNA methylation 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126081 FDM2 "AT4G00380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2148323 AT5G59390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125078 AT4G01180 "AT4G01180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045121 AT2G16490 "AT2G16490" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045412 AT2G32240 "AT2G32240" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-050208-317 tnks1bp1 "tankyrase 1 binding protein 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00024309001
SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (636 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
pfam03468116 pfam03468, XS, XS domain 2e-46
pfam03469132 pfam03469, XH, XH domain 5e-42
cd12266107 cd12266, RRM_like_XS, RNA recognition motif-like X 4e-38
pfam0347043 pfam03470, zf-XS, XS zinc finger domain 7e-13
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 1e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-06
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 5e-04
PRK12704 520 PRK12704, PRK12704, phosphodiesterase; Provisional 6e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
pfam10186307 pfam10186, Atg14, UV radiation resistance protein 0.003
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.004
>gnl|CDD|217578 pfam03468, XS, XS domain Back     alignment and domain information 
 Score =  159 bits (404), Expect = 2e-46
 Identities = 65/118 (55%), Positives = 87/118 (73%), Gaps = 2/118 (1%)

Query: 114 PDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGF 173
            ++  V+PW+GI+ N+ T++ +DGR VGESG+ LRD      FNPLKV PLW+R GH+GF
Sbjct: 1   QEEKYVWPWMGILVNVPTEKKKDGRGVGESGATLRDRLSR--FNPLKVKPLWNREGHTGF 58

Query: 174 AVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLI 231
           A+V+F KDW+GF++A+ FEK FE   HGKKD+ A +    KLYGW+AR DDYNS  L+
Sbjct: 59  AIVKFAKDWSGFRDALRFEKHFEKQGHGKKDWLARRGQDSKLYGWVARADDYNSPGLV 116

The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X and SGS3. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain has recently been predicted to possess an RRM-like RNA-binding domain by fold recognition. Length = 116
>gnl|CDD|217579 pfam03469, XH, XH domain Back     alignment and domain information
>gnl|CDD|240712 cd12266, RRM_like_XS, RNA recognition motif-like XS domain found in plants Back     alignment and domain information
>gnl|CDD|217580 pfam03470, zf-XS, XS zinc finger domain Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|220623 pfam10186, Atg14, UV radiation resistance protein and autophagy-related subunit 14 Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 630
PF03469132 XH: XH domain; InterPro: IPR005379 The XH (rice ge 100.0
PF03468116 XS: XS domain; InterPro: IPR005380 The XS (rice ge 100.0
PF0347043 zf-XS: XS zinc finger domain; InterPro: IPR005381 99.63
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.09
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.03
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 96.63
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.56
PF10174775 Cast: RIM-binding protein of the cytomatrix active 96.48
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.46
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.45
PRK11637428 AmiB activator; Provisional 95.46
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.28
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 95.07
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 94.95
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 94.91
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 94.85
KOG0964 1200 consensus Structural maintenance of chromosome pro 94.56
PRK11637428 AmiB activator; Provisional 94.53
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 94.52
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 94.5
PRK02224 880 chromosome segregation protein; Provisional 94.47
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 94.44
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 93.94
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 93.89
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 93.22
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 93.02
KOG0978698 consensus E3 ubiquitin ligase involved in syntaxin 92.96
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 92.8
KOG02501074 consensus DNA repair protein RAD18 (SMC family pro 92.77
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 92.6
TIGR006061311 rad50 rad50. This family is based on the phylogeno 92.49
KOG05791187 consensus Ste20-like serine/threonine protein kina 92.34
KOG09331174 consensus Structural maintenance of chromosome pro 92.12
KOG0933 1174 consensus Structural maintenance of chromosome pro 92.02
PF15272196 BBP1_C: Spindle pole body component BBP1, C-termin 92.0
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 91.68
KOG0964 1200 consensus Structural maintenance of chromosome pro 91.67
KOG0577948 consensus Serine/threonine protein kinase [Signal 91.57
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 91.48
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 91.12
COG1382119 GimC Prefoldin, chaperonin cofactor [Posttranslati 91.07
KOG00181141 consensus Structural maintenance of chromosome pro 90.79
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 90.28
KOG1937521 consensus Uncharacterized conserved protein [Funct 89.73
PHA02562562 46 endonuclease subunit; Provisional 89.53
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 89.42
PRK02224 880 chromosome segregation protein; Provisional 89.27
PF05701522 WEMBL: Weak chloroplast movement under blue light; 88.71
KOG0977546 consensus Nuclear envelope protein lamin, intermed 88.61
PRK09039343 hypothetical protein; Validated 88.54
PF15066527 CAGE1: Cancer-associated gene protein 1 family 88.06
PRK03918 880 chromosome segregation protein; Provisional 87.64
PF0560554 zf-Di19: Drought induced 19 protein (Di19), zinc-b 87.48
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 86.82
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 86.7
KOG0239 670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 86.6
PF05911 769 DUF869: Plant protein of unknown function (DUF869) 86.49
PRK04863 1486 mukB cell division protein MukB; Provisional 84.86
PRK04778569 septation ring formation regulator EzrA; Provision 84.5
COG1340294 Uncharacterized archaeal coiled-coil protein [Func 83.22
KOG0249 916 consensus LAR-interacting protein and related prot 82.94
PF13851201 GAS: Growth-arrest specific micro-tubule binding 82.62
KOG0804493 consensus Cytoplasmic Zn-finger protein BRAP2 (BRC 82.51
KOG0963629 consensus Transcription factor/CCAAT displacement 81.97
PF05701522 WEMBL: Weak chloroplast movement under blue light; 81.67
KOG4674 1822 consensus Uncharacterized conserved coiled-coil pr 81.05
KOG0946970 consensus ER-Golgi vesicle-tethering protein p115 80.86
KOG0971 1243 consensus Microtubule-associated protein dynactin 80.83
KOG0995581 consensus Centromere-associated protein HEC1 [Cell 80.63
>PF03469 XH: XH domain; InterPro: IPR005379 The XH (rice gene X Homology) domain is found in a family of plant proteins including Oryza sativa (Rice) Q9SBW2 from SWISSPROT Back     alignment and domain information 
Probab=100.00  E-value=2.5e-64  Score=465.75  Aligned_cols=131  Identities=60%  Similarity=1.085  Sum_probs=129.8

Q ss_pred             eecCCCCChHHHHHHHhcCCCchhhHHHHHHHHHHHHhhcCCCCcceeEE-ecCCCCcccccccCcHHHHHHHHHhhHHH
Q 038527          496 KRMGEIDNRPFLAAAKAKFPAEEADEKGLELCSLWEEYLRDPNWHPFKIL-VDKEGNCKEIIDVEDQKLKSLKNEYGEQV  574 (630)
Q Consensus       496 KrmGeld~~~f~~ac~~k~~~~~~~~~a~~l~s~Wq~~l~dp~W~PFk~v-~~~~g~~keii~edD~kL~~Lk~e~Geev  574 (630)
                      ||||+||.+||+.||++||++++|+++|++|||+||++|+||+||||||| ++  |+.++|||+||+||++||++||+||
T Consensus         1 KrMGeLd~kpF~~Ack~k~~~eeae~~A~~LcS~Wqe~ikdp~WhPFkvv~~~--g~~~evi~edDekL~~Lk~e~Geev   78 (132)
T PF03469_consen    1 KRMGELDEKPFLNACKRKYPEEEAEVKAAELCSLWQEEIKDPEWHPFKVVTVD--GKEKEVIDEDDEKLQELKEEWGEEV   78 (132)
T ss_pred             CcccccChHHHHHHHHHhcChhHHHHHHHHHHHHHHHHhhCCCccceEEeccC--CcccccccCchHHHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999 88  9999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhCCCCCcccccccccccccccchHHHHHHHHHHHHHhhhhc
Q 038527          575 HNAVALAQSEMNQYNPSGRYTIPELWNFKENRKATLKEGAIHLLNQWRVNRKRK  628 (630)
Q Consensus       575 ~~aV~~Al~E~neyN~sgry~v~elWN~ke~rkAtl~E~v~~~~~~~k~~k~kr  628 (630)
                      |+||++||+|||||||||||||||||||+|||||||+|||+||++||+++||||
T Consensus        79 y~aV~~Al~E~nEyN~sGry~v~eLWN~ke~RkAtl~E~v~~i~~q~k~~krkr  132 (132)
T PF03469_consen   79 YNAVTKALLEINEYNPSGRYPVPELWNFKEGRKATLKEVVQYILKQWKTLKRKR  132 (132)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCccCCccccccccCHHHHHHHHHHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999997

The molecular function of these proteins is unknown, however these proteins usually contain an XS domain (IPR005380 from INTERPRO) that is also found in the PTGS protein SGS3. As the XS and XH domains are fused in most of these proteins, these two domains may interact. The XH domain is between 124 and 145 residues in length and contains a conserved glutamate residue that may be functionally important [].
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT Back     alignment and domain information
>PF03470 zf-XS: XS zinc finger domain; InterPro: IPR005381 This domain is a putative nucleic acid binding zinc finger and is found at the N terminus of proteins that also contain an adjacent XS domain IPR005380 from INTERPRO and in some proteins a C-terminal XH domain IPR005379 from INTERPRO Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0577 consensus Serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF15066 CAGE1: Cancer-associated gene protein 1 family Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only] Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
4e8u_A172 Crystal Structure Of Arabidopsis Idn2 Xs Domain Alo 6e-46
>pdb|4E8U|A Chain A, Crystal Structure Of Arabidopsis Idn2 Xs Domain Along With A Small Segment Of Adjacent Coiled-Coil Region Length = 172 Back     alignment and structure 
Iteration: 1

 Score =  182 bits (461), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 89/168 (52%), Positives = 114/168 (67%)
Query: 110 TDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRG 169
           +D   D+ LVYPW GIV NI T + +DGR  GESGSKLRDE+  +GFNP +V PLW+  G
Sbjct: 1   SDCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLG 60
Query: 170 HSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKS 229
           HSG A+VEF KDW G  N ++F+K++ VD HGKKD+         LYGWIAR DDYN  +
Sbjct: 61  HSGTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNN 120
Query: 230 LIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEME 277
           +IG++LRK GDLKT++    E+ RK   LV NL + +E K    KE+E
Sbjct: 121 IIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIE 168

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query630
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 8e-63
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 6e-06
2zuo_A861 MVP, major vault protein; repeat domains, protein- 8e-06
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 1e-04
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 8e-04
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Length = 172 Back     alignment and structure
 Score =  204 bits (521), Expect = 8e-63
 Identities = 89/171 (52%), Positives = 114/171 (66%)

Query: 110 TDHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRG 169
           +D   D+ LVYPW GIV NI T + +DGR  GESGSKLRDE+  +GFNP +V PLW+  G
Sbjct: 1   SDCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLG 60

Query: 170 HSGFAVVEFYKDWAGFKNAIMFEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKS 229
           HSG A+VEF KDW G  N ++F+K++ VD HGKKD+         LYGWIAR DDYN  +
Sbjct: 61  HSGTAIVEFNKDWNGLHNGLLFDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNN 120

Query: 230 LIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKDMRYKEMEMKY 280
           +IG++LRK GDLKT++    E+ RK   LV NL + +E K    KE+E   
Sbjct: 121 IIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKKKDMKEIEELC 171
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
4e8u_A172 Putative uncharacterized protein T8P19.180; XS dom 100.0
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.76
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 94.27
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 92.69
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 92.15
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 91.71
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.69
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 89.69
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 88.55
1wez_A102 HnRNP H', FTP-3, heterogeneous nuclear ribonucleop 86.26
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 86.15
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 85.98
3ghg_A 562 Fibrinogen alpha chain; triple-stranded coiled coi 85.7
2lmi_A107 GRSF-1, G-rich sequence factor 1; G-rich RNA seque 85.34
2cq3_A103 RNA-binding protein 9; RRM domain, structural geno 84.97
2dnn_A109 RNA-binding protein 12; RRM domain, RBD, structura 84.11
2dgw_A91 Probable RNA-binding protein 19; RRM domain, struc 83.6
2lxi_A91 RNA-binding protein 10; NMR {Homo sapiens} 82.84
2cpy_A114 RNA-binding protein 12; RRM domain, structural gen 81.2
2dha_A123 FLJ20171 protein; RRM domain, structural genomics, 81.16
2hgm_A126 HNRPF protein, heterogeneous nuclear ribonucleopro 80.99
2cqi_A103 Nucleolysin TIAR; RNA recognition motif, RRM, RNA 80.81
2err_A109 Ataxin-2-binding protein 1; protein-RNA complex, R 80.47
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 80.36
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana} Back     alignment and structure
Probab=100.00  E-value=1.6e-64  Score=484.35  Aligned_cols=171  Identities=52%  Similarity=0.902  Sum_probs=162.6

Q ss_pred             CCCCCceeeccceEEEeccccccCCCCcccccChhhHHHHHHhCCCCCcccccccCCCCCceeEEEEeCCChhhhHHHHH
Q 038527          111 DHQPDQLLVYPWVGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPLKVHPLWSRRGHSGFAVVEFYKDWAGFKNAIM  190 (630)
Q Consensus       111 ~~~~dd~iVWPwmgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~  190 (630)
                      .++++++|||||||||+|||+++++||+++|+|+++|+++|+.+||+|++|+|+||++||+|+|||+|++||+||+||++
T Consensus         2 ~~~~~~~~VWPwmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~   81 (172)
T 4e8u_A            2 DCDHDEKLVYPWKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL   81 (172)
T ss_dssp             ----CCEEEESCEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred             CCCCCCEEECCCEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence            36889999999999999999966899999999999999999777799999999999999999999999999999999999


Q ss_pred             HHhhhhhcCCChhhhhhhcCCCccceeeeeecCCCCCCChhhhhhhhCCCCcChhhHHHhhhhhhhhHHHHHHHHHHHHh
Q 038527          191 FEKSFEVDHHGKKDFYAVKNLGDKLYGWIARDDDYNSKSLIGDHLRKNGDLKTVSGKEAEDQRKTSTLVTNLTRTLEVKD  270 (630)
Q Consensus       191 lek~Fe~~~~GKkdW~~~~~~~~~LYGWvAradDy~s~g~ig~~Lrk~gdLKTv~ei~~E~~rk~~~lv~~L~n~I~~kn  270 (630)
                      ||+||+.+||||+||.++++++++||||||++|||+|.||||+||||+||||||+||++|++|++++||++|+++|++||
T Consensus        82 fek~Fe~~~~GK~dW~~~~~~~~~lyGW~Ar~dDy~s~~~iG~~Lrk~gdLKTv~~i~~E~~rk~~~lv~~L~~~ie~kn  161 (172)
T 4e8u_A           82 FDKAYTVDGHGKKDWLKKDGPKLGLYGWIARADDYNGNNIIGENLRKTGDLKTIAELTEEEARKQELLVQNLRQLVEEKK  161 (172)
T ss_dssp             HHHHHHHTTCSHHHHTCSSSCCCSCEEEECBHHHHHSSSHHHHHHHTTCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCHHHHhhCCCCCCceEEEecccccccCCChHHHHHHHcCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888899999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHhh
Q 038527          271 MRYKEMEMKYL  281 (630)
Q Consensus       271 ~~l~elE~k~~  281 (630)
                      +||++||++||
T Consensus       162 ~~l~ele~k~~  172 (172)
T 4e8u_A          162 KDMKEIEELCS  172 (172)
T ss_dssp             HHHHHHHHHC-
T ss_pred             HHHHHHHHhhC
Confidence            99999999997
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G* Back     alignment and structure
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens} Back     alignment and structure
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens} Back     alignment and structure
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A Back     alignment and structure
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query630
d2ghpa275 U4/U6 snRNA-associated-splicing factor PRP24 {Bake 94.17
d1weza_102 Heterogeneous nuclear ribonucleoprotein H' {Human 90.93
d2cq3a193 RNA-binding protein 9 {Human (Homo sapiens) [TaxId 88.16
d1cvja289 Poly(A)-binding protein {Human (Homo sapiens) [Tax 88.12
d1wi8a_104 Eukaryotic translation initiation factor 4B {Human 87.37
d1wela1112 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 86.68
d2cqpa186 RNA-binding protein 12 {Mouse (Mus musculus) [TaxI 86.09
d1fjeb191 Nucleolin {Golden hamster (Mesocricetus auratus) [ 85.36
d2cqia190 Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 960 84.78
d2cpya1103 RNA-binding protein 12 {Human (Homo sapiens) [TaxI 83.59
d1wg5a_104 Heterogeneous nuclear ribonucleoprotein H' {Human 83.3
d1x4aa195 Splicing factor, arginine/serine-rich 1, SFRS1 {Hu 81.68
d2f9da1114 Pre-mRNA branch site protein p14 {Human (Homo sapi 81.24
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing factor PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: RNA-binding domain, RBD
family: Canonical RBD
domain: U4/U6 snRNA-associated-splicing factor PRP24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.17  E-value=0.027  Score=44.16  Aligned_cols=60  Identities=23%  Similarity=0.279  Sum_probs=48.1

Q ss_pred             eEEEeccccccCCCCcccccChhhHHHHHHhCCCCCc-ccccccCCCCCceeEEEEeCCChhhhHHHHHHHhh
Q 038527          123 VGIVANIKTQRGEDGRYVGESGSKLRDEFRSKGFNPL-KVHPLWSRRGHSGFAVVEFYKDWAGFKNAIMFEKS  194 (630)
Q Consensus       123 mgII~Ni~~e~~~dg~~~G~s~~~L~~~~~~~GF~p~-kv~~l~g~~Gh~g~aVV~F~~dw~Gf~nA~~lek~  194 (630)
                      ++.|-|+|..         .+...|++.|+.  |.+. .++.+.++.+++|+|.|+|. +-.+-..|+.++.+
T Consensus         2 tv~V~nlp~~---------~t~~~l~~~F~~--~G~I~~v~~~~~~~~~~~~afV~F~-~~~~a~~Al~~~~~   62 (75)
T d2ghpa2           2 TVLVKNLPKS---------YNQNKVYKYFKH--CGPIIHVDVADSLKKNFRFARIEFA-RYDGALAAITKTHK   62 (75)
T ss_dssp             EEEEEEECTT---------CCHHHHHHHHGG--GSCEEEEEEEECTTSSSEEEEEEES-SHHHHHHHHTTTTC
T ss_pred             EEEEECCCCC---------CCHHHHHHHHhc--CCceEEEEEEeeccccceEEEEEEc-chHHhHHHHHhcCc
Confidence            5788899875         478999999999  8775 57777899999999999994 56666778776544
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus auratus) [TaxId: 10036]} Back     information, alignment and structure
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H' {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich 1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure