Citrus Sinensis ID: 038542
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | 2.2.26 [Sep-21-2011] | |||||||
| A8MQA3 | 595 | Pentatricopeptide repeat- | yes | no | 0.987 | 0.788 | 0.481 | 1e-136 | |
| Q0WQW5 | 638 | Pentatricopeptide repeat- | no | no | 0.995 | 0.741 | 0.472 | 1e-127 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.997 | 0.639 | 0.465 | 1e-126 | |
| Q683I9 | 573 | Pentatricopeptide repeat- | no | no | 1.0 | 0.828 | 0.455 | 1e-126 | |
| Q8LK93 | 603 | Pentatricopeptide repeat- | no | no | 0.997 | 0.786 | 0.443 | 1e-125 | |
| Q9FI80 | 646 | Pentatricopeptide repeat- | no | no | 0.989 | 0.727 | 0.426 | 1e-123 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.991 | 0.745 | 0.426 | 1e-122 | |
| Q9FND7 | 612 | Putative pentatricopeptid | no | no | 0.989 | 0.767 | 0.414 | 1e-120 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 1.0 | 0.766 | 0.391 | 1e-116 | |
| Q9FG16 | 622 | Pentatricopeptide repeat- | no | no | 1.0 | 0.763 | 0.415 | 1e-116 |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 484 bits (1245), Expect = e-136, Method: Compositional matrix adjust.
Identities = 227/471 (48%), Positives = 331/471 (70%), Gaps = 2/471 (0%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
V P+ TYPF++KA + D+ LG+++H V++ FG I+VQN+L+H+Y +C G +
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC-GDVASA 175
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
KVFD+M E+D V+W+++I G+A G +A+ L+ +M G+ PD T+V++LSAC +
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
GAL +GK V ++ K + R++ N L+D++A+CG V++A LF M + VSWTS+I
Sbjct: 236 GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295
Query: 186 AGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
GLA++G G EA+ LF+ M G+ P ++ FVG+L ACSHCG+V +G EYF M+ ++
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355
Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
I P+IEH+GCMVD+L R+G+VK+A+E+I+ MP++ N +IWRTL+ AC G+ LAE
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415
Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
+++ EP H +YVLLS++YA RW KIR+ M + G+KK+PG +L+E+ N ++EF
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEF 475
Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
+ GDKSH QS IY L EM +++ GYVP S V +D+ EE+KE+A+ HSEK+AIAF
Sbjct: 476 LMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAF 535
Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
L+ TP +PI +VKNLRVC DCH A K +SK+YNREIVVRDR RFHHFK+
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKN 586
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WQW5|PPR85_ARATH Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 455 bits (1171), Expect = e-127, Method: Compositional matrix adjust.
Identities = 232/491 (47%), Positives = 325/491 (66%), Gaps = 18/491 (3%)
Query: 1 MLEYG-VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
MLE G SP+K T+PFVLKACA I + GK VH ++K FG D++V N L+H+YGSC
Sbjct: 141 MLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC- 199
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
G ++L RKVFDEM ER VSW++MI R G A+ LFR+MQ S PD TM +VL
Sbjct: 200 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRS-FEPDGYTMQSVL 258
Query: 120 SACTDLGALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
SAC LG+L +G W +F+ ++ V V + N+LI+M+ KCG + A ++F+ M R
Sbjct: 259 SACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 318
Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--GVPPDDVAFVGLLSACSHCGLVDKGRE 234
+ SW ++I G A HGR EA+ F+ M++ V P+ V FVGLL AC+H G V+KGR+
Sbjct: 319 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 378
Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
YFD M D+ I P +EHYGC+VD++ R+G + EA + + MP++ + +IWR+L+ ACC +
Sbjct: 379 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK 438
Query: 295 G-ELKLAESITKRLIGNEPMHESN-------YVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
G ++L+E I + +IG + +ES+ YVLLS +YA RW +R++M + G+
Sbjct: 439 GASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 498
Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLD-I 404
+K PG + IE++ +EF GD SH Q+K+IY+ L + +++ GY+P S+ L+D
Sbjct: 499 RKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDAT 558
Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
N+ KE +L HSE+LAIAF L+ PP TPIRI KNLRVCNDCH TK ISK++N EI+V
Sbjct: 559 NDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIV 618
Query: 465 RDRHRFHHFKD 475
RDR RFHHFKD
Sbjct: 619 RDRVRFHHFKD 629
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 452 bits (1164), Expect = e-126, Method: Compositional matrix adjust.
Identities = 222/477 (46%), Positives = 325/477 (68%), Gaps = 3/477 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M++ V P++ T V+ ACA G + LG+ VH + FG ++ + N L+ +Y C G
Sbjct: 257 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC-G 315
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+E +F+ + +D +SW+ +IGGY + L +A+ LF++M SG P+++TM+++L
Sbjct: 316 ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375
Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
AC LGA+++G+W+ +I+K++ V + L +LIDM+AKCGD++ A ++F S+ +++
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
SW ++I G AMHGR + LF M + G+ PDD+ FVGLLSACSH G++D GR F +
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRT 495
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
M D+ + PK+EHYGCM+D+L SG KEA E I M +E + +IW +L+ AC G ++
Sbjct: 496 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVE 555
Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
L ES + LI EP + +YVLLS+IYA RW + K R +++ +GMKK+PG + IE+D
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
+ ++EF+ GDK H +++EIY ML+EM ++KAG+VP TSEVL ++ EE KE AL HSE
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSE 675
Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF+D
Sbjct: 676 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 732
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q683I9|PP295_ARATH Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 451 bits (1159), Expect = e-126, Method: Compositional matrix adjust.
Identities = 233/512 (45%), Positives = 329/512 (64%), Gaps = 37/512 (7%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
M + VSP+ T+PF+L + L LG+ H +L F D V+ +L++MY SC
Sbjct: 53 MRNHRVSPDFHTFPFLLPSFHNPLHLPLGQRTHAQILLFGLDKDPFVRTSLLNMYSSCGD 112
Query: 59 ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
G I+ RK+FDEM ER+ +SWS +I GY
Sbjct: 113 LRSAQRVFDDSGSKDLPAWNSVVNAYAKAGLIDDARKLFDEMPERNVISWSCLINGYVMC 172
Query: 91 GLSTDAIDLFRQMQI-----SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR 145
G +A+DLFR+MQ+ + V P+E TM TVLSAC LGALE GKWV ++I+K V
Sbjct: 173 GKYKEALDLFREMQLPKPNEAFVRPNEFTMSTVLSACGRLGALEQGKWVHAYIDKYHVEI 232
Query: 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV-SWTSVIAGLAMHGRGLEAVALFEEM 204
+ L ALIDM+AKCG +++A ++F ++ + V +++++I LAM+G E LF EM
Sbjct: 233 DIVLGTALIDMYAKCGSLERAKRVFNALGSKKDVKAYSAMICCLAMYGLTDECFQLFSEM 292
Query: 205 LEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263
+ + P+ V FVG+L AC H GL+++G+ YF M +FGI P I+HYGCMVD+ RSG
Sbjct: 293 TTSDNINPNSVTFVGILGACVHRGLINEGKSYFKMMIEEFGITPSIQHYGCMVDLYGRSG 352
Query: 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323
+KEA FI MP+E + +IW +L+S G++K E KRLI +PM+ YVLLS+
Sbjct: 353 LIKEAESFIASMPMEPDVLIWGSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSN 412
Query: 324 IYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDE 383
+YAK RW + IR M+ +G+ K+PG + +E++ ++EFV GD+S +S+ IY MLDE
Sbjct: 413 VYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDE 472
Query: 384 MGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRV 443
+ +++++AGYV T EVLLD+NE+DKE AL+ HSEKLAIAF L+KT PGTP+RI+KNLR+
Sbjct: 473 IMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRI 532
Query: 444 CNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
C DCH K ISK+++REIVVRD +RFHHF+D
Sbjct: 533 CGDCHLVMKMISKLFSREIVVRDCNRFHHFRD 564
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 449 bits (1154), Expect = e-125, Method: Compositional matrix adjust.
Identities = 211/476 (44%), Positives = 322/476 (67%), Gaps = 2/476 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
+LE G+ P+ +T+P +LKACA L G+ +H +K D+++V TL++MY CE
Sbjct: 120 ILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECED 179
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
++ R VFD + E V ++AMI GYAR +A+ LFR+MQ + P+EIT+++VLS
Sbjct: 180 -VDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLS 238
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
+C LG+L++GKW+ + +K + V + ALIDMFAKCG +D A+ +F M + +
Sbjct: 239 SCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQA 298
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W+++I A HG+ +++ +FE M V PD++ F+GLL+ACSH G V++GR+YF M
Sbjct: 299 WSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMV 358
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
+ FGI+P I+HYG MVD+L R+G +++A+EFI K+PI P++WR L++AC + L LA
Sbjct: 359 SKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLA 418
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E +++R+ + H +YV+LS++YA+ +WE +R+VM R K+PG + IE++N
Sbjct: 419 EKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNV 478
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
++EF GD + +++ LDEM +++K +GYVP TS V+ ++N+++KE L HSEK
Sbjct: 479 VHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEK 538
Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
LAI F LL TPPGT IR+VKNLRVC DCH+A K IS I+ R++V+RD RFHHF+D
Sbjct: 539 LAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFED 594
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FI80|PP425_ARATH Pentatricopeptide repeat-containing protein At5g48910 OS=Arabidopsis thaliana GN=PCMP-H38 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 442 bits (1136), Expect = e-123, Method: Compositional matrix adjust.
Identities = 219/514 (42%), Positives = 324/514 (63%), Gaps = 44/514 (8%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC------- 58
V PN+FT+P VLKACA G + GK +HG LK+ FG D V + LV MY C
Sbjct: 124 VEPNRFTFPSVLKACAKTGKIQEGKQIHGLALKYGFGGDEFVMSNLVRMYVMCGFMKDAR 183
Query: 59 --------------------------------EGGIELG-----RKVFDEMSERDSVSWS 81
+G + LG R +FD+M +R VSW+
Sbjct: 184 VLFYKNIIEKDMVVMTDRRKRDGEIVLWNVMIDGYMRLGDCKAARMLFDKMRQRSVVSWN 243
Query: 82 AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ 141
MI GY+ G DA+++FR+M+ + P+ +T+V+VL A + LG+LE+G+W+ + E
Sbjct: 244 TMISGYSLNGFFKDAVEVFREMKKGDIRPNYVTLVSVLPAISRLGSLELGEWLHLYAEDS 303
Query: 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201
+ L +ALIDM++KCG ++KA+ +F + +++W+++I G A+HG+ +A+ F
Sbjct: 304 GIRIDDVLGSALIDMYSKCGIIEKAIHVFERLPRENVITWSAMINGFAIHGQAGDAIDCF 363
Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
+M +AGV P DVA++ LL+ACSH GLV++GR YF M + G+ P+IEHYGCMVD+L R
Sbjct: 364 CKMRQAGVRPSDVAYINLLTACSHGGLVEEGRRYFSQMVSVDGLEPRIEHYGCMVDLLGR 423
Query: 262 SGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321
SG + EA EFI MPI+ + +IW+ L+ AC +G +++ + + L+ P YV L
Sbjct: 424 SGLLDEAEEFILNMPIKPDDVIWKALLGACRMQGNVEMGKRVANILMDMVPHDSGAYVAL 483
Query: 322 SHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEML 381
S++YA W + +++R M ++ ++K PG +LI++D ++EFV D SH ++KEI ML
Sbjct: 484 SNMYASQGNWSEVSEMRLRMKEKDIRKDPGCSLIDIDGVLHEFVVEDDSHPKAKEINSML 543
Query: 382 DEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNL 441
E+ K++ AGY P T++VLL++ EEDKE+ L+ HSEK+A AF L+ T PG PIRIVKNL
Sbjct: 544 VEISDKLRLAGYRPITTQVLLNLEEEDKENVLHYHSEKIATAFGLISTSPGKPIRIVKNL 603
Query: 442 RVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
R+C DCHS+ K ISK+Y R+I VRDR RFHHF+D
Sbjct: 604 RICEDCHSSIKLISKVYKRKITVRDRKRFHHFQD 637
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 440 bits (1131), Expect = e-122, Method: Compositional matrix adjust.
Identities = 216/507 (42%), Positives = 324/507 (63%), Gaps = 36/507 (7%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG---- 56
+L ++PN+FT+ +LK+C+ GK +H VLKF G D +V LV +Y
Sbjct: 121 LLSSEINPNEFTFSSLLKSCS----TKSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGD 176
Query: 57 -----------------------SC---EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
+C +G +E R +FD M ERD VSW+ MI GYA+
Sbjct: 177 VVSAQKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQH 236
Query: 91 GLSTDAIDLFRQMQISGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149
G DA+ LF+++ G PDEIT+V LSAC+ +GALE G+W+ F++ + +V +
Sbjct: 237 GFPNDALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKV 296
Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AG 208
C LIDM++KCG +++A+ +F + IV+W ++IAG AMHG +A+ LF EM G
Sbjct: 297 CTGLIDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITG 356
Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268
+ P D+ F+G L AC+H GLV++G F+SM ++GI PKIEHYGC+V +L R+G++K A
Sbjct: 357 LQPTDITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRA 416
Query: 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328
+E I+ M ++A+ ++W +++ +C G+ L + I + LIG + YVLLS+IYA +
Sbjct: 417 YETIKNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASV 476
Query: 329 LRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKM 388
+E K+R +M ++G+ K PG + IE++N+++EF GD+ H +SKEIY ML ++ ++
Sbjct: 477 GDYEGVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERI 536
Query: 389 KKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCH 448
K GYVP T+ VL D+ E +KE +L HSE+LAIA+ L+ T PG+P++I KNLRVC+DCH
Sbjct: 537 KSHGYVPNTNTVLQDLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCH 596
Query: 449 SATKFISKIYNREIVVRDRHRFHHFKD 475
+ TK ISKI R+IV+RDR+RFHHF D
Sbjct: 597 TVTKLISKITGRKIVMRDRNRFHHFTD 623
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FND7|PP410_ARATH Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 432 bits (1112), Expect = e-120, Method: Compositional matrix adjust.
Identities = 207/500 (41%), Positives = 320/500 (64%), Gaps = 30/500 (6%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYG------SCE 59
+ P+ +T F+++AC G+ G VHG ++ F +D HVQ L+ +Y SC
Sbjct: 104 LKPDNYTVNFLVQACTGLRMRETGLQVHGMTIRRGFDNDPHVQTGLISLYAELGCLDSCH 163
Query: 60 ------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTD 95
G + RK+F+ M ERD ++W+AMI GYA++G S +
Sbjct: 164 KVFNSIPCPDFVCRTAMVTACARCGDVVFARKLFEGMPERDPIAWNAMISGYAQVGESRE 223
Query: 96 AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155
A+++F MQ+ GV + + M++VLSACT LGAL+ G+W S+IE+ + +V L L+D
Sbjct: 224 ALNVFHLMQLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVD 283
Query: 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215
++AKCGD++KA+++F M + + +W+S + GLAM+G G + + LF M + GV P+ V
Sbjct: 284 LYAKCGDMEKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVT 343
Query: 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275
FV +L CS G VD+G+ +FDSM+N+FGI P++EHYGC+VD+ R+GR+++A IQ+M
Sbjct: 344 FVSVLRGCSVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQM 403
Query: 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335
P++ + +W +L+ A L+L +K+++ E + YVLLS+IYA W+ +
Sbjct: 404 PMKPHAAVWSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVS 463
Query: 336 KIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395
+R+ M +G++K PG +++E++ E++EF GDKSH + +I + ++ R+++ AGY
Sbjct: 464 HVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKA 523
Query: 396 TTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455
T+ V+ DI+EE+KEDAL HSEK AIAF ++ PIRIVKNLRVC DCH + IS
Sbjct: 524 DTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMIS 583
Query: 456 KIYNREIVVRDRHRFHHFKD 475
KI+NREI+VRDR+RFHHFKD
Sbjct: 584 KIFNREIIVRDRNRFHHFKD 603
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 419 bits (1076), Expect = e-116, Method: Compositional matrix adjust.
Identities = 198/506 (39%), Positives = 318/506 (62%), Gaps = 31/506 (6%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
ML N +T+P +LKAC+ + +H + K + +D++ N+L++ Y
Sbjct: 106 MLCSSAPHNAYTFPSLLKACSNLSAFEETTQIHAQITKLGYENDVYAVNSLINSYAVTGN 165
Query: 59 ----------------------------EGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
G +++ +F +M+E++++SW+ MI GY +
Sbjct: 166 FKLAHLLFDRIPEPDDVSWNSVIKGYVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQA 225
Query: 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
++ +A+ LF +MQ S V PD +++ LSAC LGALE GKW+ S++ K + L
Sbjct: 226 DMNKEALQLFHEMQNSDVEPDNVSLANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLG 285
Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
LIDM+AKCG++++AL++F+++ +++ +WT++I+G A HG G EA++ F EM + G+
Sbjct: 286 CVLIDMYAKCGEMEEALEVFKNIKKKSVQAWTALISGYAYHGHGREAISKFMEMQKMGIK 345
Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
P+ + F +L+ACS+ GLV++G+ F SM+ D+ + P IEHYGC+VD+L R+G + EA
Sbjct: 346 PNVITFTAVLTACSYTGLVEEGKLIFYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKR 405
Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
FIQ+MP++ N +IW L+ AC ++L E I + LI +P H YV ++I+A +
Sbjct: 406 FIQEMPLKPNAVIWGALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKK 465
Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390
W+K + R +M ++G+ K+PG + I L+ +EF+ GD+SH + ++I M RK+++
Sbjct: 466 WDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEE 525
Query: 391 AGYVPTTSEVLLDINEEDKEDAL-NKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
GYVP E+LLD+ ++D+ +A+ ++HSEKLAI + L+KT PGT IRI+KNLRVC DCH
Sbjct: 526 NGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHK 585
Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
TK ISKIY R+IV+RDR RFHHF+D
Sbjct: 586 VTKLISKIYKRDIVMRDRTRFHHFRD 611
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FG16|PP367_ARATH Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 418 bits (1074), Expect = e-116, Method: Compositional matrix adjust.
Identities = 210/506 (41%), Positives = 318/506 (62%), Gaps = 31/506 (6%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE- 59
ML+ + P+ T+PF++KA + + + +G+ H +++F F +D++V+N+LVHMY +C
Sbjct: 108 MLKSRIWPDNITFPFLIKASSEMECVLVGEQTHSQIVRFGFQNDVYVENSLVHMYANCGF 167
Query: 60 -----------------------------GGIELGRKVFDEMSERDSVSWSAMIGGYARL 90
G +E R++FDEM R+ +WS MI GYA+
Sbjct: 168 IAAAGRIFGQMGFRDVVSWTSMVAGYCKCGMVENAREMFDEMPHRNLFTWSIMINGYAKN 227
Query: 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150
AIDLF M+ GV +E MV+V+S+C LGALE G+ ++ K + ++ L
Sbjct: 228 NCFEKAIDLFEFMKREGVVANETVMVSVISSCAHLGALEFGERAYEYVVKSHMTVNLILG 287
Query: 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP 210
AL+DMF +CGD++KA+ +F + +SW+S+I GLA+HG +A+ F +M+ G
Sbjct: 288 TALVDMFWRCGDIEKAIHVFEGLPETDSLSWSSIIKGLAVHGHAHKAMHYFSQMISLGFI 347
Query: 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270
P DV F +LSACSH GLV+KG E +++MK D GI P++EHYGC+VDML R+G++ EA
Sbjct: 348 PRDVTFTAVLSACSHGGLVEKGLEIYENMKKDHGIEPRLEHYGCIVDMLGRAGKLAEAEN 407
Query: 271 FIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330
FI KM ++ N I L+ AC ++AE + LI +P H YVLLS+IYA +
Sbjct: 408 FILKMHVKPNAPILGALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQ 467
Query: 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCG-DKSHHQSKEIYEMLDEMGRKMK 389
W+K +R++M ++ +KK PG +LIE+D +I +F G D+ H + +I +E+ K++
Sbjct: 468 WDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIR 527
Query: 390 KAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHS 449
GY T + D++EE+KE +++ HSEKLAIA+ ++KT PGT IRIVKNLRVC DCH+
Sbjct: 528 LIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHT 587
Query: 450 ATKFISKIYNREIVVRDRHRFHHFKD 475
TK IS++Y RE++VRDR+RFHHF++
Sbjct: 588 VTKLISEVYGRELIVRDRNRFHHFRN 613
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| 224089225 | 487 | predicted protein [Populus trichocarpa] | 1.0 | 0.975 | 0.778 | 0.0 | |
| 357436955 | 600 | Pentatricopeptide repeat-containing prot | 1.0 | 0.791 | 0.75 | 0.0 | |
| 449442178 | 606 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.783 | 0.732 | 0.0 | |
| 359476124 | 583 | PREDICTED: pentatricopeptide repeat-cont | 0.981 | 0.799 | 0.726 | 0.0 | |
| 356562016 | 705 | PREDICTED: pentatricopeptide repeat-cont | 1.0 | 0.673 | 0.724 | 0.0 | |
| 115456255 | 602 | Os03g0821700 [Oryza sativa Japonica Grou | 0.997 | 0.787 | 0.604 | 1e-175 | |
| 125546238 | 602 | hypothetical protein OsI_14107 [Oryza sa | 0.997 | 0.787 | 0.602 | 1e-175 | |
| 357114903 | 611 | PREDICTED: pentatricopeptide repeat-cont | 0.997 | 0.775 | 0.606 | 1e-169 | |
| 413932592 | 619 | hypothetical protein ZEAMMB73_912965 [Ze | 0.993 | 0.762 | 0.612 | 1e-168 | |
| 242032459 | 607 | hypothetical protein SORBIDRAFT_01g00315 | 0.997 | 0.780 | 0.612 | 1e-167 |
| >gi|224089225|ref|XP_002308660.1| predicted protein [Populus trichocarpa] gi|222854636|gb|EEE92183.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/478 (77%), Positives = 426/478 (89%), Gaps = 3/478 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
MLE PNKFTYPFVLKACAGIG+LNLGKSVHG+V+KF FGD+++VQNTLVHMY C
Sbjct: 1 MLERKKLPNKFTYPFVLKACAGIGNLNLGKSVHGSVMKFGFGDEVNVQNTLVHMYCCCRG 60
Query: 59 -EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
EGGIE RKVFDEM + DSVSWSAMIGGY R+G S+DAI+LFR+MQI GVCPDEITMV+
Sbjct: 61 GEGGIEFARKVFDEMYKSDSVSWSAMIGGYVRVGRSSDAINLFREMQIKGVCPDEITMVS 120
Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
VLSACT LGALE+GKWVES++EK+ V ++V L NALIDMFAKCGDVDKA LFRSM R
Sbjct: 121 VLSACTGLGALELGKWVESYVEKERVQKNVELSNALIDMFAKCGDVDKATNLFRSMRERN 180
Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
IVSWTSVI GLAMHGRG+EAVA+FEEM+ +GV PDDV F+GLLSACSH GLVDKG+ YFD
Sbjct: 181 IVSWTSVIGGLAMHGRGVEAVAVFEEMVRSGVTPDDVVFIGLLSACSHSGLVDKGKRYFD 240
Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
SM+ DF I+PKIEHYGCMVDMLCR+G VKEA +F+Q+MPI+ NP++WRTLI+AC A GEL
Sbjct: 241 SMRKDFSIVPKIEHYGCMVDMLCRAGLVKEALKFVQEMPIDPNPVVWRTLINACRAHGEL 300
Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
KL E IT++LI NEPMHESNYVLLS+IYAK+ WEKKT+IRE MD +GMKKIPGST+IEL
Sbjct: 301 KLGEKITRQLIRNEPMHESNYVLLSNIYAKMSDWEKKTRIREAMDMKGMKKIPGSTMIEL 360
Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
DNEIYEFV GDKSH QSKEIYEM+DEMG++MK+AGY+PTT+EVLLDI++EDKED LN+HS
Sbjct: 361 DNEIYEFVAGDKSHAQSKEIYEMVDEMGKEMKRAGYMPTTTEVLLDIDDEDKEDTLNRHS 420
Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
EKLAIAFALL TPPGT IRIVKNLRVC+DCHSA+KFISKIYNREIVVRDR+RFHHFK+
Sbjct: 421 EKLAIAFALLNTPPGTLIRIVKNLRVCDDCHSASKFISKIYNREIVVRDRNRFHHFKN 478
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357436955|ref|XP_003588753.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355477801|gb|AES59004.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 357/476 (75%), Positives = 417/476 (87%), Gaps = 1/476 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-E 59
ML YGV+PNKFT+PFVLK CAGIG L LGK VHG V+KF F +D+HV NTL+HMY E
Sbjct: 116 MLRYGVTPNKFTFPFVLKGCAGIGSLRLGKCVHGCVVKFGFEEDVHVLNTLIHMYCCLGE 175
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
G E KVFD+ + D+V+WSAMI G+ RLG S+ A+DLFR+MQ+ GVCPDEITMV+VL
Sbjct: 176 DGFEFAEKVFDDSPKMDTVTWSAMIAGFVRLGCSSRAVDLFREMQVMGVCPDEITMVSVL 235
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
SAC DLGALE+GKWVES++EK+ + +SV LCNALIDMFAKCG+VDKA+KLFR M+ RTIV
Sbjct: 236 SACADLGALELGKWVESYVEKKNIPKSVELCNALIDMFAKCGNVDKAIKLFRQMDSRTIV 295
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
SWTSVIAGLAMHGRGL+AV+LF+EM+E G+ PDDVAF+G+LSACSH GLVDKGR YF SM
Sbjct: 296 SWTSVIAGLAMHGRGLDAVSLFDEMVENGITPDDVAFIGVLSACSHSGLVDKGRYYFGSM 355
Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
+ +F I+PK+EHYGCMVD+LCR G VKEA EF+QKMP E N IIWRT+I+AC A GELKL
Sbjct: 356 ERNFSIVPKVEHYGCMVDLLCRGGFVKEAFEFVQKMPFEPNQIIWRTIITACHATGELKL 415
Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
ESI+K LI +EPMHESNYVLLS+IYAKL +WEKKTK+RE+MD RGMKK+PGST+IE++N
Sbjct: 416 GESISKELIKSEPMHESNYVLLSNIYAKLRQWEKKTKVREMMDMRGMKKVPGSTMIEVNN 475
Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
E+YEFV GDKSH Q KEIYEM+DEMGR++KKAGYVPTTS+VLLDI+EEDKEDAL +HSEK
Sbjct: 476 EMYEFVAGDKSHDQYKEIYEMVDEMGREIKKAGYVPTTSQVLLDIDEEDKEDALYRHSEK 535
Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
LAIAFALL TPPGT IRIVKNLRVC DCHSATKFISK+YNREIVVRDR+RFHHFK+
Sbjct: 536 LAIAFALLNTPPGTSIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKN 591
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442178|ref|XP_004138859.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus] gi|449529652|ref|XP_004171812.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1942), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 348/475 (73%), Positives = 412/475 (86%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML + PNKFTYPFVLKACAG+ LNLG++VHG+V+KF F DIHVQNT+VHMY C G
Sbjct: 123 MLHDAILPNKFTYPFVLKACAGLEVLNLGQTVHGSVVKFGFDCDIHVQNTMVHMYSCCAG 182
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
GI RKVFDEM + DSV+WSAMIGGYAR+G ST+A+ LFR+MQ++ VCPDEITMV++LS
Sbjct: 183 GINSARKVFDEMPKSDSVTWSAMIGGYARVGRSTEAVALFREMQMAEVCPDEITMVSMLS 242
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
ACTDLGALE+GKW+E++IE+ +++ V + NALIDMFAKCGD+ KALKLFR+MN +TIVS
Sbjct: 243 ACTDLGALELGKWIEAYIERHEIHKPVEVSNALIDMFAKCGDISKALKLFRAMNEKTIVS 302
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
WTSVI G+AMHGRG EA LFEEM +GV PDDVAF+GLLSACSH GLV++GREYF SM
Sbjct: 303 WTSVIVGMAMHGRGQEATCLFEEMTSSGVAPDDVAFIGLLSACSHSGLVERGREYFGSMM 362
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
+ ++PKIEHYGCMVDM CR+G VKEA EF++ MPIE NP+I RTL+SAC GE KL
Sbjct: 363 KKYKLVPKIEHYGCMVDMYCRTGLVKEALEFVRNMPIEPNPVILRTLVSACRGHGEFKLG 422
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E ITK L+ +EP+HESNYVLLS+IYAK L WEKKTKIREVM+ +GMKK+PGST+IE+DNE
Sbjct: 423 EKITKLLMKHEPLHESNYVLLSNIYAKTLSWEKKTKIREVMEVKGMKKVPGSTMIEIDNE 482
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
IYEFV GDKSH Q KEIYEM+DEMGR+MKK+GY P+TSEVLLDINEEDKED+LN+HSEKL
Sbjct: 483 IYEFVAGDKSHKQHKEIYEMVDEMGREMKKSGYRPSTSEVLLDINEEDKEDSLNRHSEKL 542
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
AIAF LL+TPPGTPIRIVKNLRVC+DCHSA+KFISKIY+REI++RDR+RFHHFK
Sbjct: 543 AIAFGLLRTPPGTPIRIVKNLRVCSDCHSASKFISKIYDREIIMRDRNRFHHFKS 597
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359476124|ref|XP_002282605.2| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Vitis vinifera] gi|296082021|emb|CBI21026.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 752 bits (1941), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 345/475 (72%), Positives = 416/475 (87%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML YG+SPNK+ +PFVLKACAG+ DLNLGK+VHG+++KF F DDI VQNT+VHMY C G
Sbjct: 100 MLGYGISPNKYAFPFVLKACAGLRDLNLGKAVHGSLVKFGFDDDIFVQNTMVHMYCCCSG 159
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
G+E RK+FDEM + D V+W+AMIGGYARLG S A+ LFR+MQI+GVCPD++TMV+VLS
Sbjct: 160 GMEFARKLFDEMPKLDPVTWTAMIGGYARLGQSAGAVGLFRKMQIAGVCPDDVTMVSVLS 219
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
ACTDLGALE+GKW+ES+IEK+ V ++V L NAL+DMFAKCGDVDKAL LFR+M+ RTIVS
Sbjct: 220 ACTDLGALELGKWIESYIEKERVLKTVELSNALVDMFAKCGDVDKALGLFRNMSKRTIVS 279
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
WTSVI GLAMHGRGLEAV+LFEEM +G+ P+D+AF+GLLSACSH GLV++GR+YF M
Sbjct: 280 WTSVIVGLAMHGRGLEAVSLFEEMKASGMVPEDIAFIGLLSACSHSGLVERGRQYFSEMT 339
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
FGI+PKIEHYGCMVD+L R+G V EA EF+++MPIE NPIIWRTLISAC GELKL
Sbjct: 340 RQFGIVPKIEHYGCMVDLLSRAGLVTEALEFVERMPIEPNPIIWRTLISACRVHGELKLG 399
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
ESI+K+LI NEPMHESNYVLLS+IY K+L WEKK+KIR M K+G++K+PGST+IELDNE
Sbjct: 400 ESISKQLIRNEPMHESNYVLLSNIYGKMLDWEKKSKIRVAMGKKGIQKVPGSTMIELDNE 459
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
I+EF+ GD+SH+Q EI +M++EMGR+MK+AGY PTT+EV LDI+EEDKEDAL++HSEKL
Sbjct: 460 IHEFIVGDRSHNQYNEIIKMVNEMGREMKRAGYAPTTTEVFLDIDEEDKEDALSRHSEKL 519
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
AIAFALL TPPG+PIRI KNLRVC DCHSA+KFISKIYNREIV+RDR RFHHF+D
Sbjct: 520 AIAFALLNTPPGSPIRITKNLRVCGDCHSASKFISKIYNREIVMRDRSRFHHFRD 574
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356562016|ref|XP_003549271.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 741 bits (1912), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 347/479 (72%), Positives = 412/479 (86%), Gaps = 4/479 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-- 58
M + VSPNKFT+PFVLKACAG+ L LG +VH +++KF F +D HV+NTLVHMY C
Sbjct: 218 MRRHAVSPNKFTFPFVLKACAGMMRLELGGAVHASMVKFGFEEDPHVRNTLVHMYCCCCQ 277
Query: 59 --EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116
G +KVFDE +DSV+WSAMIGGYAR G S A+ LFR+MQ++GVCPDEITMV
Sbjct: 278 DGSSGPVSAKKVFDESPVKDSVTWSAMIGGYARAGNSARAVTLFREMQVTGVCPDEITMV 337
Query: 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
+VLSAC DLGALE+GKW+ES+IE++ + RSV LCNALIDMFAKCGDVD+A+K+FR M R
Sbjct: 338 SVLSACADLGALELGKWLESYIERKNIMRSVELCNALIDMFAKCGDVDRAVKVFREMKVR 397
Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236
TIVSWTS+I GLAMHGRGLEAV +F+EM+E GV PDDVAF+G+LSACSH GLVDKG YF
Sbjct: 398 TIVSWTSMIVGLAMHGRGLEAVLVFDEMMEQGVDPDDVAFIGVLSACSHSGLVDKGHYYF 457
Query: 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
++M+N F I+PKIEHYGCMVDML R+GRV EA EF++ MP+E N +IWR++++AC ARGE
Sbjct: 458 NTMENMFSIVPKIEHYGCMVDMLSRAGRVNEALEFVRAMPVEPNQVIWRSIVTACHARGE 517
Query: 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIE 356
LKL ES+ K LI EP HESNYVLLS+IYAKLLRWEKKTK+RE+MD +GM+KIPGST+IE
Sbjct: 518 LKLGESVAKELIRREPSHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIE 577
Query: 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKH 416
++NEIYEFV GDKSH Q KEIYEM++EMGR++K+AGYVPTTS+VLLDI+EEDKEDAL +H
Sbjct: 578 MNNEIYEFVAGDKSHDQYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRH 637
Query: 417 SEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
SEKLAIAFALL TPPGTPIRIVKNLRVC DCHSATKFISK+YNREIVVRDR+RFHHFK+
Sbjct: 638 SEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKN 696
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|115456255|ref|NP_001051728.1| Os03g0821700 [Oryza sativa Japonica Group] gi|29124127|gb|AAO65868.1| hypothetical protein [Oryza sativa Japonica Group] gi|108711802|gb|ABF99597.1| expressed protein [Oryza sativa Japonica Group] gi|113550199|dbj|BAF13642.1| Os03g0821700 [Oryza sativa Japonica Group] gi|125588431|gb|EAZ29095.1| hypothetical protein OsJ_13153 [Oryza sativa Japonica Group] gi|215736898|dbj|BAG95827.1| unnamed protein product [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 622 bits (1603), Expect = e-175, Method: Compositional matrix adjust.
Identities = 289/478 (60%), Positives = 375/478 (78%), Gaps = 4/478 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
ML V PNKFT+PF+LKACA + G ++G H A LKF F D +V NTL+HMY SC
Sbjct: 117 MLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY-SCF 175
Query: 60 GGIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
GG LG R VFD M + +V+WSAMIGGY R GLS+DA+DLFR+MQ +GV DE+T++
Sbjct: 176 GGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVDLFREMQANGVQADEVTVIG 235
Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
VL+A TDLGALE+ +WV F+E++ + +SV LCNALID AKCGDVD A+ +F M R+
Sbjct: 236 VLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRS 295
Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
+VSWTSVI LAM GRG EAV +FEEM AGVPPDDVAF+G+L+ACSH G+VD+G YFD
Sbjct: 296 VVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFD 355
Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
+MK ++GI PKIEHYGCMVDM R+G V+ A EF++ MPI+ NP+IWR+L+SAC A G L
Sbjct: 356 AMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRL 415
Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
+L ESIT+ L+ P HE+NY++LS+++A RW++K++IR M KRG+KK+PG +++EL
Sbjct: 416 ELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVEL 475
Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
D E++EF+ GD+SH Q K+IY M++EM R++++ G++ TSEVLLD++EEDKE AL HS
Sbjct: 476 DGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHS 535
Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
EKLAIAFALL+TPPGT +R+VKNLRVC+DCH+A K IS++Y REIVVRDR RFH FKD
Sbjct: 536 EKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKD 593
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125546238|gb|EAY92377.1| hypothetical protein OsI_14107 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1599), Expect = e-175, Method: Compositional matrix adjust.
Identities = 288/478 (60%), Positives = 375/478 (78%), Gaps = 4/478 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
ML V PNKFT+PF+LKACA + G ++G H A LKF F D +V NTL+HMY SC
Sbjct: 117 MLRGAVVPNKFTFPFLLKACAALPGSPDVGLQAHAAALKFGFATDQYVSNTLIHMY-SCF 175
Query: 60 GGIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
GG LG R VFD M + +V+WSAMIGGY R GLS+DA++LFR+MQ +GV DE+T++
Sbjct: 176 GGGFLGDARNVFDRMPKESAVTWSAMIGGYVRGGLSSDAVELFREMQANGVQADEVTVIG 235
Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
VL+A TDLGALE+ +WV F+E++ + +SV LCNALID AKCGDVD A+ +F M R+
Sbjct: 236 VLAAATDLGALELARWVRRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMQQRS 295
Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
+VSWTSVI LAM GRG EAV +FEEM AGVPPDDVAF+G+L+ACSH G+VD+G YFD
Sbjct: 296 VVSWTSVIDALAMEGRGKEAVRVFEEMKVAGVPPDDVAFIGVLTACSHAGMVDEGCGYFD 355
Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
+MK ++GI PKIEHYGCMVDM R+G V+ A EF++ MPI+ NP+IWR+L+SAC A G L
Sbjct: 356 AMKVEYGIEPKIEHYGCMVDMFGRAGMVERAMEFVRTMPIQPNPVIWRSLVSACRAHGRL 415
Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
+L ESIT+ L+ P HE+NY++LS+++A RW++K++IR M KRG+KK+PG +++EL
Sbjct: 416 ELGESITRSLLHEYPAHEANYIMLSNVFALTQRWKEKSEIRREMSKRGIKKVPGCSIVEL 475
Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
D E++EF+ GD+SH Q K+IY M++EM R++++ G++ TSEVLLD++EEDKE AL HS
Sbjct: 476 DGEVHEFIAGDESHPQYKDIYRMVEEMARELRRVGHIAATSEVLLDLDEEDKEGALQWHS 535
Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
EKLAIAFALL+TPPGT +R+VKNLRVC+DCH+A K IS++Y REIVVRDR RFH FKD
Sbjct: 536 EKLAIAFALLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYRREIVVRDRSRFHRFKD 593
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357114903|ref|XP_003559233.1| PREDICTED: pentatricopeptide repeat-containing protein At5g48910-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 601 bits (1549), Expect = e-169, Method: Compositional matrix adjust.
Identities = 290/478 (60%), Positives = 372/478 (77%), Gaps = 4/478 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
ML V+PNKFT+PF+LK+CA + G ++G H A LKF F D +V NTL+HMY SC
Sbjct: 126 MLRAAVAPNKFTFPFLLKSCAALPGSPDVGLQAHAAALKFGFAADHYVSNTLIHMY-SCF 184
Query: 60 GGIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
G LG R VF+ M +V+WSAMIGGY R GLS+DA+ LFR MQ+SGV PDE+T++
Sbjct: 185 GAGFLGDARNVFERMPRESAVTWSAMIGGYVRAGLSSDAVVLFRGMQVSGVRPDEVTVIG 244
Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
VL+A DLGALE+ +WV F+E++ + +SV LCNALID AKCGDVD A+ +F M RT
Sbjct: 245 VLAAAADLGALELTRWVGRFVEREGIGKSVTLCNALIDTLAKCGDVDGAVAVFEGMEERT 304
Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
+VSWTSVI LAM GRG EAV +FEEM GV PDDVAF+G+L+ACSH G+VD+GR YFD
Sbjct: 305 VVSWTSVIDALAMEGRGKEAVGVFEEMKAVGVLPDDVAFIGVLTACSHAGMVDEGRGYFD 364
Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
SMK ++GI PKIEHYGCMVDM R+G V++ EF++ MP++ NPIIWRTL++AC A G L
Sbjct: 365 SMKTEYGIEPKIEHYGCMVDMFGRAGMVEQGLEFVRAMPMKPNPIIWRTLVAACRAHGRL 424
Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
+L ESIT+ L+ P HE+NYV+LS++YA RW++K++IR M KRG+KK+PG +L+EL
Sbjct: 425 ELGESITRNLLNEFPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVEL 484
Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
D E++EF+ GD+SH Q KEIY M++EM R++++ G++ TSEVLLD++EEDKE AL HS
Sbjct: 485 DGEVHEFIAGDESHPQYKEIYRMVEEMSRELRRIGHIAATSEVLLDLDEEDKEGALQWHS 544
Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
EKLAIAF LL+TPPGT +R+VKNLRVC+DCH+A K IS++YNREIVVRDR RFH FKD
Sbjct: 545 EKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISQVYNREIVVRDRSRFHRFKD 602
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|413932592|gb|AFW67143.1| hypothetical protein ZEAMMB73_912965 [Zea mays] | Back alignment and taxonomy information |
|---|
Score = 598 bits (1542), Expect = e-168, Method: Compositional matrix adjust.
Identities = 292/477 (61%), Positives = 371/477 (77%), Gaps = 5/477 (1%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML PNKFT+PF+LKACA +G H A LKF F D +V NTL+HMY SC G
Sbjct: 137 MLRSATLPNKFTFPFLLKACAAFP--GVGVQAHAAALKFGFTTDQYVSNTLIHMY-SCFG 193
Query: 61 GIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
G LG R VFD M++ +V+WSAMIGGY R GLS+DA+ LFR+MQ SGV PDE+TM+ V
Sbjct: 194 GEFLGDARNVFDRMAKSSAVTWSAMIGGYVRSGLSSDAVGLFREMQASGVRPDEVTMIGV 253
Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
L+A DLGALE+ +WV F+EK+ + +SV LCNALID AKCGD+D A+ +F+ M RTI
Sbjct: 254 LAAAADLGALELARWVGRFVEKEGIGKSVTLCNALIDALAKCGDLDGAMAVFQGMKERTI 313
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
VSWTSVI LAM GRG EAVA+FEEM AGV PDDVAF+G+L+ACSH G+VD+G YF+S
Sbjct: 314 VSWTSVIDALAMEGRGKEAVAVFEEMKTAGVRPDDVAFIGVLTACSHAGMVDEGYGYFES 373
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
M+ +GI PKIEHYGCMVDM R+G V+ A EF+ KMP++ NPIIWRTL++AC A G L+
Sbjct: 374 MRMAYGIDPKIEHYGCMVDMFGRAGMVERAMEFVHKMPMKPNPIIWRTLVAACRAHGRLE 433
Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
L E+IT+ L+ P HE+NYV+LS++YA RW++K++IR M KRG+KK+PG +L+ELD
Sbjct: 434 LGETITRNLLNEYPAHEANYVMLSNVYALTRRWKEKSEIRREMSKRGIKKVPGCSLVELD 493
Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
E++EF+ GD+SH Q KEIY M++EM R++++AG++ TSEVLLD++EEDKE AL HSE
Sbjct: 494 GEVHEFIAGDESHPQWKEIYMMVEEMARELRRAGHISATSEVLLDLDEEDKEVALQWHSE 553
Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
KLAIAF LL+TPPGT +R+VKNLRVC+DCH+A K IS +YNREI+VRDR RFH FK+
Sbjct: 554 KLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKN 610
|
Source: Zea mays Species: Zea mays Genus: Zea Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|242032459|ref|XP_002463624.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor] gi|241917478|gb|EER90622.1| hypothetical protein SORBIDRAFT_01g003150 [Sorghum bicolor] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust.
Identities = 293/478 (61%), Positives = 368/478 (76%), Gaps = 4/478 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGI-GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
ML V PNKFT+PF+LKACA + G +G H A LKF F D +V NTL+HMY SC
Sbjct: 122 MLRSAVLPNKFTFPFLLKACAALPGFPGVGLQAHAAALKFGFATDQYVSNTLIHMY-SCF 180
Query: 60 GGIELG--RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117
GG LG R VFD M + V+WSAMIGGY R GLS+DA+ LFR+MQ SGV PDE+T++
Sbjct: 181 GGEFLGDARNVFDRMDKSSVVTWSAMIGGYVRGGLSSDAVGLFREMQASGVRPDEVTVIG 240
Query: 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177
VL+A DLGALE+ +WV F+E++ + +SV LCNALID AKCGDVD A+ +F+ M RT
Sbjct: 241 VLAAAADLGALELARWVGRFVEREGIGKSVTLCNALIDALAKCGDVDGAVAVFQGMEERT 300
Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237
+VSWTSVI LAM GRG EAVA+FE M AGV PDDV F+G+L+ACSH G+VD+G YFD
Sbjct: 301 VVSWTSVIDALAMEGRGKEAVAVFEAMKTAGVRPDDVVFIGVLTACSHAGMVDEGYGYFD 360
Query: 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGEL 297
SMK ++GI PKIEHYGCMVDM R+G V+ A EFI MP++ NPIIWRTL++AC A G L
Sbjct: 361 SMKMEYGIDPKIEHYGCMVDMFGRAGMVERAMEFIHTMPMKPNPIIWRTLVAACRAHGRL 420
Query: 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIEL 357
+L ESIT+ L+ P HE+NYV+LS++YA RW++K++IR M KRG+KK+PG +L+EL
Sbjct: 421 ELGESITRNLLNEYPAHEANYVMLSNVYALTQRWKEKSEIRREMSKRGIKKVPGCSLVEL 480
Query: 358 DNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHS 417
D E++EF+ GD+SH Q KEIY M++EM R++K G++ TSEVLLD++EEDKE AL HS
Sbjct: 481 DGEVHEFIAGDESHPQWKEIYMMVEEMARELKHVGHISATSEVLLDLDEEDKEGALQWHS 540
Query: 418 EKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
EKLAIAF LL+TPPGT +R+VKNLRVC+DCH+A K IS +YNREI+VRDR RFH FK+
Sbjct: 541 EKLAIAFVLLRTPPGTQVRVVKNLRVCSDCHAAIKCISLVYNREIIVRDRSRFHRFKN 598
|
Source: Sorghum bicolor Species: Sorghum bicolor Genus: Sorghum Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 475 | ||||||
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.987 | 0.788 | 0.481 | 3e-124 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.997 | 0.639 | 0.465 | 2.2e-121 | |
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.995 | 0.741 | 0.472 | 8.8e-118 | |
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.997 | 0.786 | 0.443 | 8.2e-115 | |
| TAIR|locus:2081635 | 573 | AT3G62890 [Arabidopsis thalian | 0.989 | 0.820 | 0.464 | 4.1e-113 | |
| TAIR|locus:2055919 | 786 | AT2G22070 "AT2G22070" [Arabido | 0.875 | 0.529 | 0.448 | 1e-107 | |
| TAIR|locus:2126352 | 632 | AT4G37380 [Arabidopsis thalian | 0.901 | 0.677 | 0.456 | 1.7e-107 | |
| TAIR|locus:2034456 | 606 | AT1G31920 [Arabidopsis thalian | 0.995 | 0.780 | 0.412 | 1.1e-105 | |
| TAIR|locus:1009023396 | 612 | AT5G40405 "AT5G40405" [Arabido | 0.907 | 0.704 | 0.442 | 5.8e-105 | |
| TAIR|locus:2049562 | 584 | AT2G01510 "AT2G01510" [Arabido | 0.997 | 0.811 | 0.433 | 2e-104 |
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1221 (434.9 bits), Expect = 3.0e-124, P = 3.0e-124
Identities = 227/471 (48%), Positives = 331/471 (70%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
V P+ TYPF++KA + D+ LG+++H V++ FG I+VQN+L+H+Y +C G +
Sbjct: 117 VEPDTHTYPFLIKAVTTMADVRLGETIHSVVIRSGFGSLIYVQNSLLHLYANC-GDVASA 175
Query: 66 RKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL 125
KVFD+M E+D V+W+++I G+A G +A+ L+ +M G+ PD T+V++LSAC +
Sbjct: 176 YKVFDKMPEKDLVAWNSVINGFAENGKPEEALALYTEMNSKGIKPDGFTIVSLLSACAKI 235
Query: 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVI 185
GAL +GK V ++ K + R++ N L+D++A+CG V++A LF M + VSWTS+I
Sbjct: 236 GALTLGKRVHVYMIKVGLTRNLHSSNVLLDLYARCGRVEEAKTLFDEMVDKNSVSWTSLI 295
Query: 186 AGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244
GLA++G G EA+ LF+ M G+ P ++ FVG+L ACSHCG+V +G EYF M+ ++
Sbjct: 296 VGLAVNGFGKEAIELFKYMESTEGLLPCEITFVGILYACSHCGMVKEGFEYFRRMREEYK 355
Query: 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304
I P+IEH+GCMVD+L R+G+VK+A+E+I+ MP++ N +IWRTL+ AC G+ LAE
Sbjct: 356 IEPRIEHFGCMVDLLARAGQVKKAYEYIKSMPMQPNVVIWRTLLGACTVHGDSDLAEFAR 415
Query: 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEF 364
+++ EP H +YVLLS++YA RW KIR+ M + G+KK+PG +L+E+ N ++EF
Sbjct: 416 IQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEF 475
Query: 365 VCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAF 424
+ GDKSH QS IY L EM +++ GYVP S V +D+ EE+KE+A+ HSEK+AIAF
Sbjct: 476 LMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVYHSEKIAIAF 535
Query: 425 ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
L+ TP +PI +VKNLRVC DCH A K +SK+YNREIVVRDR RFHHFK+
Sbjct: 536 MLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKN 586
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1194 (425.4 bits), Expect = 2.2e-121, P = 2.2e-121
Identities = 222/477 (46%), Positives = 325/477 (68%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M++ V P++ T V+ ACA G + LG+ VH + FG ++ + N L+ +Y C G
Sbjct: 257 MMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC-G 315
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+E +F+ + +D +SW+ +IGGY + L +A+ LF++M SG P+++TM+++L
Sbjct: 316 ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375
Query: 121 ACTDLGALEVGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
AC LGA+++G+W+ +I+K++ V + L +LIDM+AKCGD++ A ++F S+ +++
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
SW ++I G AMHGR + LF M + G+ PDD+ FVGLLSACSH G++D GR F +
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRT 495
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
M D+ + PK+EHYGCM+D+L SG KEA E I M +E + +IW +L+ AC G ++
Sbjct: 496 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVE 555
Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
L ES + LI EP + +YVLLS+IYA RW + K R +++ +GMKK+PG + IE+D
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
+ ++EF+ GDK H +++EIY ML+EM ++KAG+VP TSEVL ++ EE KE AL HSE
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQEMEEEWKEGALRHHSE 675
Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
KLAIAF L+ T PGT + IVKNLRVC +CH ATK ISKIY REI+ RDR RFHHF+D
Sbjct: 676 KLAIAFGLISTKPGTKLTIVKNLRVCRNCHEATKLISKIYKREIIARDRTRFHHFRD 732
|
|
| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1160 (413.4 bits), Expect = 8.8e-118, P = 8.8e-118
Identities = 232/491 (47%), Positives = 325/491 (66%)
Query: 1 MLEYGVS-PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE 59
MLE G S P+K T+PFVLKACA I + GK VH ++K FG D++V N L+H+YGSC
Sbjct: 141 MLERGESSPDKHTFPFVLKACAYIFGFSEGKQVHCQIVKHGFGGDVYVNNGLIHLYGSC- 199
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
G ++L RKVFDEM ER VSW++MI R G A+ LFR+MQ S PD TM +VL
Sbjct: 200 GCLDLARKVFDEMPERSLVSWNSMIDALVRFGEYDSALQLFREMQRSFE-PDGYTMQSVL 258
Query: 120 SACTDLGALEVGKWVESFIEKQM---VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176
SAC LG+L +G W +F+ ++ V V + N+LI+M+ KCG + A ++F+ M R
Sbjct: 259 SACAGLGSLSLGTWAHAFLLRKCDVDVAMDVLVKNSLIEMYCKCGSLRMAEQVFQGMQKR 318
Query: 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--GVPPDDVAFVGLLSACSHCGLVDKGRE 234
+ SW ++I G A HGR EA+ F+ M++ V P+ V FVGLL AC+H G V+KGR+
Sbjct: 319 DLASWNAMILGFATHGRAEEAMNFFDRMVDKRENVRPNSVTFVGLLIACNHRGFVNKGRQ 378
Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR 294
YFD M D+ I P +EHYGC+VD++ R+G + EA + + MP++ + +IWR+L+ ACC +
Sbjct: 379 YFDMMVRDYCIEPALEHYGCIVDLIARAGYITEAIDMVMSMPMKPDAVIWRSLLDACCKK 438
Query: 295 G-ELKLAESITKRLIGNEPMHESN-------YVLLSHIYAKLLRWEKKTKIREVMDKRGM 346
G ++L+E I + +IG + +ES+ YVLLS +YA RW +R++M + G+
Sbjct: 439 GASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGI 498
Query: 347 KKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV-LLDI- 404
+K PG + IE++ +EF GD SH Q+K+IY+ L + +++ GY+P S+ L+D
Sbjct: 499 RKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDAT 558
Query: 405 NEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464
N+ KE +L HSE+LAIAF L+ PP TPIRI KNLRVCNDCH TK ISK++N EI+V
Sbjct: 559 NDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIV 618
Query: 465 RDRHRFHHFKD 475
RDR RFHHFKD
Sbjct: 619 RDRVRFHHFKD 629
|
|
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
Identities = 211/476 (44%), Positives = 322/476 (67%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
+LE G+ P+ +T+P +LKACA L G+ +H +K D+++V TL++MY CE
Sbjct: 120 ILEDGILPDNYTFPSLLKACAVAKALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECED 179
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
++ R VFD + E V ++AMI GYAR +A+ LFR+MQ + P+EIT+++VLS
Sbjct: 180 -VDSARCVFDRIVEPCVVCYNAMITGYARRNRPNEALSLFREMQGKYLKPNEITLLSVLS 238
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
+C LG+L++GKW+ + +K + V + ALIDMFAKCG +D A+ +F M + +
Sbjct: 239 SCALLGSLDLGKWIHKYAKKHSFCKYVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQA 298
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W+++I A HG+ +++ +FE M V PD++ F+GLL+ACSH G V++GR+YF M
Sbjct: 299 WSAMIVAYANHGKAEKSMLMFERMRSENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMV 358
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
+ FGI+P I+HYG MVD+L R+G +++A+EFI K+PI P++WR L++AC + L LA
Sbjct: 359 SKFGIVPSIKHYGSMVDLLSRAGNLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLA 418
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E +++R+ + H +YV+LS++YA+ +WE +R+VM R K+PG + IE++N
Sbjct: 419 EKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNV 478
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVL-LDINEEDKEDALNKHSEK 419
++EF GD + +++ LDEM +++K +GYVP TS V+ ++N+++KE L HSEK
Sbjct: 479 VHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEK 538
Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
LAI F LL TPPGT IR+VKNLRVC DCH+A K IS I+ R++V+RD RFHHF+D
Sbjct: 539 LAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFED 594
|
|
| TAIR|locus:2081635 AT3G62890 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1116 (397.9 bits), Expect = 4.1e-113, P = 4.1e-113
Identities = 224/482 (46%), Positives = 320/482 (66%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
+L +G+ + F +L + GDL + V D+ N++V+ Y G
Sbjct: 88 ILLFGLDKDPFVRTSLLNMYSSCGDLRSAQRVFDD----SGSKDLPAWNSVVNAYAKA-G 142
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI-----SGVCPDEITM 115
I+ RK+FDEM ER+ +SWS +I GY G +A+DLFR+MQ+ + V P+E TM
Sbjct: 143 LIDDARKLFDEMPERNVISWSCLINGYVMCGKYKEALDLFREMQLPKPNEAFVRPNEFTM 202
Query: 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG 175
TVLSAC LGALE GKWV ++I+K V + L ALIDM+AKCG +++A ++F ++
Sbjct: 203 STVLSACGRLGALEQGKWVHAYIDKYHVEIDIVLGTALIDMYAKCGSLERAKRVFNALGS 262
Query: 176 RTIV-SWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGR 233
+ V +++++I LAM+G E LF EM + + P+ V FVG+L AC H GL+++G+
Sbjct: 263 KKDVKAYSAMICCLAMYGLTDECFQLFSEMTTSDNINPNSVTFVGILGACVHRGLINEGK 322
Query: 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293
YF M +FGI P I+HYGCMVD+ RSG +KEA FI MP+E + +IW +L+S
Sbjct: 323 SYFKMMIEEFGITPSIQHYGCMVDLYGRSGLIKEAESFIASMPMEPDVLIWGSLLSGSRM 382
Query: 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGST 353
G++K E KRLI +PM+ YVLLS++YAK RW + IR M+ +G+ K+PG +
Sbjct: 383 LGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCS 442
Query: 354 LIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDAL 413
+E++ ++EFV GD+S +S+ IY MLDE+ +++++AGYV T EVLLD+NE+DKE AL
Sbjct: 443 YVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIAL 502
Query: 414 NKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
+ HSEKLAIAF L+KT PGTP+RI+KNLR+C DCH K ISK+++REIVVRD +RFHHF
Sbjct: 503 SYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHF 562
Query: 474 KD 475
+D
Sbjct: 563 RD 564
|
|
| TAIR|locus:2055919 AT2G22070 "AT2G22070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 926 (331.0 bits), Expect = 1.0e-107, Sum P(2) = 1.0e-107
Identities = 187/417 (44%), Positives = 264/417 (63%)
Query: 60 GGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
G + + +F + +RD V+W+AMI GY + G +AI+LFR M G P+ T+ +L
Sbjct: 361 GDMNQAKNIFVSLKDRDVVAWTAMIVGYEQHGSYGEAINLFRSMVGGGQRPNSYTLAAML 420
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-GRTI 178
S + L +L GK + K SV + NALI M+AK G++ A + F + R
Sbjct: 421 SVASSLASLSHGKQIHGSAVKSGEIYSVSVSNALITMYAKAGNITSASRAFDLIRCERDT 480
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
VSWTS+I LA HG EA+ LFE ML G+ PD + +VG+ SAC+H GLV++GR+YFD
Sbjct: 481 VSWTSMIIALAQHGHAEEALELFETMLMEGLRPDHITYVGVFSACTHAGLVNQGRQYFDM 540
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
MK+ IIP + HY CMVD+ R+G ++EA EFI+KMPIE + + W +L+SAC +
Sbjct: 541 MKDVDKIIPTLSHYACMVDLFGRAGLLQEAQEFIEKMPIEPDVVTWGSLLSACRVHKNID 600
Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
L + +RL+ EP + Y L+++Y+ +WE+ KIR+ M +KK G + IE+
Sbjct: 601 LGKVAAERLLLLEPENSGAYSALANLYSACGKWEEAAKIRKSMKDGRVKKEQGFSWIEVK 660
Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
++++ F D +H + EIY + ++ ++KK GYVP T+ VL D+ EE KE L HSE
Sbjct: 661 HKVHVFGVEDGTHPEKNEIYMTMKKIWDEIKKMGYVPDTASVLHDLEEEVKEQILRHHSE 720
Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
KLAIAF L+ TP T +RI+KNLRVCNDCH+A KFISK+ REI+VRD RFHHFKD
Sbjct: 721 KLAIAFGLISTPDKTTLRIMKNLRVCNDCHTAIKFISKLVGREIIVRDTTRFHHFKD 777
|
|
| TAIR|locus:2126352 AT4G37380 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
Identities = 197/432 (45%), Positives = 296/432 (68%)
Query: 47 VQNT-LVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105
V +T ++ Y +G +E R +FD M ERD VSW+ MI GYA+ G DA+ LF+++
Sbjct: 193 VSSTAMITCYAK-QGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPNDALMLFQKLLA 251
Query: 106 SGVC-PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164
G PDEIT+V LSAC+ +GALE G+W+ F++ + +V +C LIDM++KCG ++
Sbjct: 252 EGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGLIDMYSKCGSLE 311
Query: 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE-AGVPPDDVAFVGLLSAC 223
+A+ +F + IV+W ++IAG AMHG +A+ LF EM G+ P D+ F+G L AC
Sbjct: 312 EAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPTDITFIGTLQAC 371
Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
+H GLV++G F+SM ++GI PKIEHYGC+V +L R+G++K A+E I+ M ++A+ ++
Sbjct: 372 AHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETIKNMNMDADSVL 431
Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
W +++ +C G+ L + I + LIG + YVLLS+IYA + +E K+R +M +
Sbjct: 432 WSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYEGVAKVRNLMKE 491
Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
+G+ K PG + IE++N+++EF GD+ H +SKEIY ML ++ ++K GYVP T+ VL D
Sbjct: 492 KGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHGYVPNTNTVLQD 551
Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
+ E +KE +L HSE+LAIA+ L+ T PG+P++I KNLRVC+DCH+ TK ISKI R+IV
Sbjct: 552 LEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVCSDCHTVTKLISKITGRKIV 611
Query: 464 VRDRHRFHHFKD 475
+RDR+RFHHF D
Sbjct: 612 MRDRNRFHHFTD 623
|
|
| TAIR|locus:2034456 AT1G31920 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
Identities = 196/475 (41%), Positives = 315/475 (66%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M++ G P+ FTYP +LKAC + + GK +HG V K D+ VQN+L++MYG C G
Sbjct: 123 MMQRGNEPDNFTYPCLLKACTRLKSIREGKQIHGQVFKLGLEADVFVQNSLINMYGRC-G 181
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM-QISGVCPDEITMVTVL 119
+EL VF+++ + + SWS+M+ A +G+ ++ + LFR M + + +E MV+ L
Sbjct: 182 EMELSSAVFEKLESKTAASWSSMVSARAGMGMWSECLLLFRGMCSETNLKAEESGMVSAL 241
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179
AC + GAL +G + F+ + + ++ + +L+DM+ KCG +DKAL +F+ M R +
Sbjct: 242 LACANTGALNLGMSIHGFLLRNISELNIIVQTSLVDMYVKCGCLDKALHIFQKMEKRNNL 301
Query: 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239
+++++I+GLA+HG G A+ +F +M++ G+ PD V +V +L+ACSH GLV +GR F M
Sbjct: 302 TYSAMISGLALHGEGESALRMFSKMIKEGLEPDHVVYVSVLNACSHSGLVKEGRRVFAEM 361
Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKL 299
+ + P EHYGC+VD+L R+G ++EA E IQ +PIE N +IWRT +S C R ++L
Sbjct: 362 LKEGKVEPTAEHYGCLVDLLGRAGLLEEALETIQSIPIEKNDVIWRTFLSQCRVRQNIEL 421
Query: 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN 359
+ + L+ + +Y+L+S++Y++ W+ + R + +G+K+ PG +++EL
Sbjct: 422 GQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKG 481
Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEK 419
+ + FV D+SH + KEIY+ML +M ++K GY P +++LL+++EE+K++ L HS+K
Sbjct: 482 KTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQK 541
Query: 420 LAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474
+AIAF LL TPPG+ I+I +NLR+C+DCH+ TK IS IY REIVVRDR+RFH FK
Sbjct: 542 VAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFK 596
|
|
| TAIR|locus:1009023396 AT5G40405 "AT5G40405" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1039 (370.8 bits), Expect = 5.8e-105, P = 5.8e-105
Identities = 191/432 (44%), Positives = 294/432 (68%)
Query: 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103
D + +V C G + RK+F+ M ERD ++W+AMI GYA++G S +A+++F M
Sbjct: 173 DFVCRTAMVTACARC-GDVVFARKLFEGMPERDPIAWNAMISGYAQVGESREALNVFHLM 231
Query: 104 QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163
Q+ GV + + M++VLSACT LGAL+ G+W S+IE+ + +V L L+D++AKCGD+
Sbjct: 232 QLEGVKVNGVAMISVLSACTQLGALDQGRWAHSYIERNKIKITVRLATTLVDLYAKCGDM 291
Query: 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223
+KA+++F M + + +W+S + GLAM+G G + + LF M + GV P+ V FV +L C
Sbjct: 292 EKAMEVFWGMEEKNVYTWSSALNGLAMNGFGEKCLELFSLMKQDGVTPNAVTFVSVLRGC 351
Query: 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPII 283
S G VD+G+ +FDSM+N+FGI P++EHYGC+VD+ R+GR+++A IQ+MP++ + +
Sbjct: 352 SVVGFVDEGQRHFDSMRNEFGIEPQLEHYGCLVDLYARAGRLEDAVSIIQQMPMKPHAAV 411
Query: 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343
W +L+ A L+L +K+++ E + YVLLS+IYA W+ + +R+ M
Sbjct: 412 WSSLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKS 471
Query: 344 RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLD 403
+G++K PG +++E++ E++EF GDKSH + +I + ++ R+++ AGY T+ V+ D
Sbjct: 472 KGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFD 531
Query: 404 INEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIV 463
I+EE+KEDAL HSEK AIAF ++ PIRIVKNLRVC DCH + ISKI+NREI+
Sbjct: 532 IDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREII 591
Query: 464 VRDRHRFHHFKD 475
VRDR+RFHHFKD
Sbjct: 592 VRDRNRFHHFKD 603
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| TAIR|locus:2049562 AT2G01510 "AT2G01510" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1034 (369.0 bits), Expect = 2.0e-104, P = 2.0e-104
Identities = 207/477 (43%), Positives = 307/477 (64%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M + GV P++FTYPFV+KA + +GD + G ++H V+K+ FG V LV MY G
Sbjct: 100 MRDLGVRPDEFTYPFVVKAISQLGDFSCGFALHAHVVKYGFGCLGIVATELVMMYMKF-G 158
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+ +F+ M +D V+W+A + + G S A++ F +M V D T+V++LS
Sbjct: 159 ELSSAEFLFESMQVKDLVAWNAFLAVCVQTGNSAIALEYFNKMCADAVQFDSFTVVSMLS 218
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
AC LG+LE+G+ + K+ ++ ++ + NA +DM KCG+ + A LF M R +VS
Sbjct: 219 ACGQLGSLEIGEEIYDRARKEEIDCNIIVENARLDMHLKCGNTEAARVLFEEMKQRNVVS 278
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM- 239
W+++I G AM+G EA+ LF M G+ P+ V F+G+LSACSH GLV++G+ YF M
Sbjct: 279 WSTMIVGYAMNGDSREALTLFTTMQNEGLRPNYVTFLGVLSACSHAGLVNEGKRYFSLMV 338
Query: 240 -KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
ND + P+ EHY CMVD+L RSG ++EA+EFI+KMP+E + IW L+ AC ++
Sbjct: 339 QSNDKNLEPRKEHYACMVDLLGRSGLLEEAYEFIKKMPVEPDTGIWGALLGACAVHRDMI 398
Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
L + + L+ P S +VLLS+IYA +W+ K+R M K G KK+ + +E +
Sbjct: 399 LGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFE 458
Query: 359 NEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSE 418
+I+ F GDKSH QSK IYE LDE+ +K++K GYVP T V D+ E+KE +L+ HSE
Sbjct: 459 GKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSHHSE 518
Query: 419 KLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
KLAIAF L+K PG PIR++KNLR C+DCH+ +KF+S + + EI++RD++RFHHF++
Sbjct: 519 KLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRN 575
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | fgenesh4_pm.C_LG_VI000789 | hypothetical protein (487 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 475 | |||
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-130 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-124 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-56 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-55 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-42 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-33 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 4e-23 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-16 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-13 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-08 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 8e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.003 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.003 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 393 bits (1012), Expect = e-130
Identities = 176/475 (37%), Positives = 277/475 (58%), Gaps = 1/475 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M E G T+ +L+A AG+G G+ +H VLK D V L+ MY C G
Sbjct: 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKC-G 273
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
IE R VFD M E+ +V+W++M+ GYA G S +A+ L+ +M+ SGV D+ T ++
Sbjct: 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIR 333
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
+ L LE K + + + + AL+D+++K G ++ A +F M + ++S
Sbjct: 334 IFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS 393
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W ++IAG HGRG +AV +FE M+ GV P+ V F+ +LSAC + GL ++G E F SM
Sbjct: 394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
+ I P+ HY CM+++L R G + EA+ I++ P + +W L++AC L+L
Sbjct: 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
++L G P +NYV+L ++Y R + K+ E + ++G+ P T IE+ +
Sbjct: 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQ 573
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
+ F GD+ H QS+EIY+ LDE+ +++ + GYV +E+L D++E++++ + HSEKL
Sbjct: 574 DHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENELLPDVDEDEEKVSGRYHSEKL 633
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
AIAF L+ T TP++I ++ R+C DCH KFI+ + REIVVRD RFHHFK
Sbjct: 634 AIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKL 688
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 381 bits (980), Expect = e-124
Identities = 182/475 (38%), Positives = 286/475 (60%), Gaps = 4/475 (0%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M + VSP++ T VL ACA +GDL++G +H + + V N L+ MY C+
Sbjct: 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKC 439
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
I+ +VF + E+D +SW+++I G +A+ FRQM ++ + P+ +T++ LS
Sbjct: 440 -IDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALS 497
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
AC +GAL GK + + + + + L NAL+D++ +CG ++ A F S + + +VS
Sbjct: 498 ACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNS-HEKDVVS 556
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
W ++ G HG+G AV LF M+E+GV PD+V F+ LL ACS G+V +G EYF SM+
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300
+ I P ++HY C+VD+L R+G++ EA+ FI KMPI +P +W L++AC ++L
Sbjct: 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELG 676
Query: 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNE 360
E + + +P Y+LL ++YA +W++ ++R+ M + G+ PG + +E+ +
Sbjct: 677 ELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGK 736
Query: 361 IYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKL 420
++ F+ D+SH Q KEI +L+ KMK +G + S + +I E K+D HSE+L
Sbjct: 737 VHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSSMDEI-EVSKDDIFCGHSERL 795
Query: 421 AIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475
AIAF L+ T PG PI + KNL +C +CH+ KFISKI REI VRD +FHHFKD
Sbjct: 796 AIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKD 850
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 2e-56
Identities = 110/312 (35%), Positives = 175/312 (56%), Gaps = 13/312 (4%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M E V P+ T V+ AC +GD LG+ +HG V+K F D+ V N+L+ MY S G
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL-G 337
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
KVF M +D+VSW+AMI GY + GL A++ + M+ V PDEIT+ +VLS
Sbjct: 338 SWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLS 397
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
AC LG L+VG + E++ + V + NALI+M++KC +DKAL++F ++ + ++S
Sbjct: 398 ACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVIS 457
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE-YFDSM 239
WTS+IAGL ++ R EA+ F +ML + P+ V + LSAC+ G + G+E + +
Sbjct: 458 WTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516
Query: 240 KNDFGI---IPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296
+ G +P ++D+ R GR+ A + Q E + + W L++ A G+
Sbjct: 517 RTGIGFDGFLPN-----ALLDLYVRCGRMNYA--WNQFNSHEKDVVSWNILLTGYVAHGK 569
Query: 297 LKLAESITKRLI 308
+A + R++
Sbjct: 570 GSMAVELFNRMV 581
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Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 197 bits (503), Expect = 2e-55
Identities = 98/292 (33%), Positives = 158/292 (54%), Gaps = 3/292 (1%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
ML GV P+ +T+P VL+ C GI DL G+ VH V++F F D+ V N L+ MY C G
Sbjct: 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC-G 236
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+ R VFD M RD +SW+AMI GY G + ++LF M+ V PD +T+ +V+S
Sbjct: 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVIS 296
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
AC LG +G+ + ++ K V +CN+LI M+ G +A K+F M + VS
Sbjct: 297 ACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVS 356
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240
WT++I+G +G +A+ + M + V PD++ +LSAC+ G +D G + + +
Sbjct: 357 WTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416
Query: 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACC 292
G+I + +++M + + +A E +P E + I W ++I+
Sbjct: 417 RK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 160 bits (405), Expect = 1e-42
Identities = 96/314 (30%), Positives = 159/314 (50%), Gaps = 7/314 (2%)
Query: 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDE 71
TY +++AC + + K+V+ V F D ++ N ++ M+ C G + R++FDE
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC-GMLIDARRLFDE 183
Query: 72 MSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131
M ER+ SW +IGG G +A LFR+M G + T V +L A LG+ G
Sbjct: 184 MPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243
Query: 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191
+ + + K V + ALIDM++KCGD++ A +F M +T V+W S++AG A+H
Sbjct: 244 QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALH 303
Query: 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM-KNDFGIIPKIE 250
G EA+ L+ EM ++GV D F ++ S L++ ++ + + F + I
Sbjct: 304 GYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL--DIV 361
Query: 251 HYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI-- 308
+VD+ + GR+++A +MP + N I W LI+ G A + +R+I
Sbjct: 362 ANTALVDLYSKWGRMEDARNVFDRMPRK-NLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 309 GNEPMHESNYVLLS 322
G P H + +LS
Sbjct: 421 GVAPNHVTFLAVLS 434
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (337), Expect = 2e-33
Identities = 84/292 (28%), Positives = 133/292 (45%), Gaps = 5/292 (1%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M E V ++ Y + + C + G V L + + N ++ M+ G
Sbjct: 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRF-G 135
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120
+ VF +M ERD SW+ ++GGYA+ G +A+ L+ +M +GV PD T VL
Sbjct: 136 ELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLR 195
Query: 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180
C + L G+ V + + + V + NALI M+ KCGDV A +F M R +S
Sbjct: 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCIS 255
Query: 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD-SM 239
W ++I+G +G LE + LF M E V PD + ++SAC G GRE +
Sbjct: 256 WNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV 315
Query: 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291
K F + + ++ M G EA + +M + + + W +IS
Sbjct: 316 KTGFAV--DVSVCNSLIQMYLSLGSWGEAEKVFSRMETK-DAVSWTAMISGY 364
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Length = 857 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 93.6 bits (233), Expect = 4e-23
Identities = 50/122 (40%), Positives = 69/122 (56%), Gaps = 19/122 (15%)
Query: 360 EIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNK---- 415
E + + GD SH SKE E+ +++K G VP T E+ D++ E+ D K
Sbjct: 7 EGKKTLSGDGSHPTSKE------ELFQRIKVEGVVPETKEIGHDVDAEEFRDNGIKGKLL 60
Query: 416 --HSEKLAIAFALLKTPPGTPIRIVKNL-RVCNDCHSATKFISKIYNREIVVRDRHRFHH 472
H+EK A+A+ LL T RI+K L R+C DCH ++I+K REI+VRD RFHH
Sbjct: 61 ASHAEKQALAYGLLTT------RIIKVLKRMCGDCHEFFRYIAKYTGREIIVRDPSRFHH 114
Query: 473 FK 474
FK
Sbjct: 115 FK 116
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 1e-16
Identities = 60/197 (30%), Positives = 87/197 (44%), Gaps = 6/197 (3%)
Query: 95 DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154
A+ L MQ V DE V + C A+E G V S + V L NA++
Sbjct: 69 QALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAML 128
Query: 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214
MF + G++ A +F M R + SW ++ G A G EA+ L+ ML AGV PD
Sbjct: 129 SMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVY 188
Query: 215 AFVGLLSACSHCGLVD--KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272
F +L C G+ D +GRE + FG ++ ++ M + G V A
Sbjct: 189 TFPCVLRTCG--GIPDLARGREVHAHVVR-FGFELDVDVVNALITMYVKCGDVVSARLVF 245
Query: 273 QKMPIEANPIIWRTLIS 289
+MP + I W +IS
Sbjct: 246 DRMPRR-DCISWNAMIS 261
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 9e-13
Identities = 63/249 (25%), Positives = 111/249 (44%), Gaps = 20/249 (8%)
Query: 60 GGIELGRKVFDEMS----ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITM 115
G ++ +VF EM E + ++ A+I G AR G A + M+ V PD +
Sbjct: 486 GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVF 545
Query: 116 VTVLSACTDLGALEVGKWV--ESFIEKQMVNR---SVGLCNALIDMFAKCGDVDKALKLF 170
++SAC GA++ V E E ++ +VG AL+ A G VD+A +++
Sbjct: 546 NALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVG---ALMKACANAGQVDRAKEVY 602
Query: 171 RSMNGRTIVS----WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226
+ ++ I +T + + G A++++++M + GV PD+V F L+ H
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662
Query: 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPII-- 283
G +DK E + GI Y ++ + K+A E + + I+ P +
Sbjct: 663 GDLDKAFEILQDARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVST 721
Query: 284 WRTLISACC 292
LI+A C
Sbjct: 722 MNALITALC 730
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 62.6 bits (152), Expect = 2e-10
Identities = 63/309 (20%), Positives = 129/309 (41%), Gaps = 42/309 (13%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEG 60
M+ GV N T+ ++ CA G + K+ FG Y
Sbjct: 498 MVNAGVEANVHTFGALIDGCARAG--QVAKA---------FG-----------AY----- 530
Query: 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM--QISGVCPDEITMVTV 118
GI + V + D V ++A+I + G A D+ +M + + PD IT+ +
Sbjct: 531 GIMRSKNV-----KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585
Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
+ AC + G ++ K V I + + + + ++ ++ GD D AL ++ M + +
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGV 645
Query: 179 VS---WTSVIAGLAMHGRGL-EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234
+ S + +A H L +A + ++ + G+ V++ L+ ACS+ K E
Sbjct: 646 KPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALE 705
Query: 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISAC 291
++ +K+ + P + ++ LC ++ +A E + +M + N I + L+ A
Sbjct: 706 LYEDIKS-IKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764
Query: 292 CARGELKLA 300
+ + +
Sbjct: 765 ERKDDADVG 773
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 9e-10
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
Query: 153 LIDMFAKCGDVDKALKLFRSMNGRTIV----SWTSVIAGLAMHGRGLEAVALFEEMLEAG 208
LI AK G VD ++F M + ++ ++I G A G+ +A + M
Sbjct: 478 LISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKN 537
Query: 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG-IIPKIEHYGCMVDMLCRSG---R 264
V PD V F L+SAC G VD+ + MK + I P G ++ +G R
Sbjct: 538 VKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDR 597
Query: 265 VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307
KE ++ I + I+ P ++ +++C +G+ A SI +
Sbjct: 598 AKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDM 640
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 50.9 bits (123), Expect = 1e-08
Identities = 13/48 (27%), Positives = 25/48 (52%)
Query: 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225
+V++ ++I G G+ EA+ LF EM + G+ P+ + L+
Sbjct: 3 VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 3e-08
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122
D V+++ +I GY + G +A+ LF +M+ G+ P+ T ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 55/216 (25%), Positives = 91/216 (42%), Gaps = 45/216 (20%)
Query: 84 IGGYARL---GLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESF-I 138
I Y RL G D IDL M+ G+ D+I AC A++ E+F
Sbjct: 374 IDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVK-----EAFRF 428
Query: 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198
K + N ++ N L+ + A D+D AL++ R
Sbjct: 429 AKLIRNPTLSTFNMLMSVCASSQDIDGALRVLR--------------------------- 461
Query: 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258
L +E AG+ D + L+S C+ G VD E F M N G+ + +G ++D
Sbjct: 462 -LVQE---AGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEANVHTFGALIDG 516
Query: 259 LCRSGRVKE---AHEFIQKMPIEANPIIWRTLISAC 291
R+G+V + A+ ++ ++ + +++ LISAC
Sbjct: 517 CARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISAC 552
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-07
Identities = 53/266 (19%), Positives = 104/266 (39%), Gaps = 49/266 (18%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE--GGIE 63
+ P+ T ++KACA G ++ K V+ + ++ V V+ SC G +
Sbjct: 575 IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVN---SCSQKGDWD 631
Query: 64 LGRKVFDEMSER----DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVL 119
++D+M ++ D V +SA++ G A ++ + + G+ ++ +++
Sbjct: 632 FALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM 691
Query: 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLF---RSMNGR 176
AC NA + KAL+L+ +S+ R
Sbjct: 692 GAC---------------------------SNA--------KNWKKALELYEDIKSIKLR 716
Query: 177 -TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235
T+ + ++I L + +A+ + EM G+ P+ + + LL A D G +
Sbjct: 717 PTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDL 776
Query: 236 FDSMKNDFGIIPKIEHYGCMVDMLCR 261
K D GI P + C+ + R
Sbjct: 777 LSQAKED-GIKPNLVMCRCITGLCLR 801
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 2e-05
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE 112
V+++ +I G + G +A++LF++M+ G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 17/44 (38%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 150 CNALIDMFAKCGDVDKALKLFRSMNGR----TIVSWTSVIAGLA 189
N LID + K G V++ALKLF M R + +++ +I GL
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 4e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209
V++ S+I+G G+ EA+ LF+EM E GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 8e-05
Identities = 16/35 (45%), Positives = 23/35 (65%)
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD 213
V++ ++I GL GR EA+ LF+EM E G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 11/31 (35%), Positives = 23/31 (74%)
Query: 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108
V+++++I GY + G +A++LF++M+ GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 34/130 (26%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE---YFDS 238
S + L HG+ +A+ L E M E VP D+ A+V L C V++G S
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
G + M+ M R G + A KMP E + W L+ G
Sbjct: 115 SHPSLG----VRLGNAMLSMFVRFGELVHAWYVFGKMP-ERDLFSWNVLVGGYAKAGYFD 169
Query: 299 LAESITKRLI 308
A + R++
Sbjct: 170 EALCLYHRML 179
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 3/44 (6%)
Query: 252 YGCMVDMLCRSGRVKEAHEFIQKMP---IEANPIIWRTLISACC 292
Y ++D C+ G+V+EA + +M I+ N + LI C
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 151 NALIDMFAKCGDVDKALKLFRSM 173
N+LI + K G +++AL+LF+ M
Sbjct: 4 NSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.1 bits (82), Expect = 0.003
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 150 CNALIDMFAKCGDVDKALKLFRSM 173
N LID K G V++AL+LF+ M
Sbjct: 3 YNTLIDGLCKAGRVEEALELFKEM 26
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.0 bits (82), Expect = 0.003
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 151 NALIDMFAKCGDVDKALKLFRSM 173
N LID + G VD+A++L M
Sbjct: 11 NTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.92 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.85 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.83 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.83 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.81 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.78 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.76 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.75 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.73 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.66 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.64 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.63 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.62 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.55 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.5 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.48 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.47 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.46 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.44 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.42 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.42 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.4 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.4 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.38 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.37 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.36 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.36 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.34 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.33 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.33 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.33 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.29 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.28 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.27 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.25 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.22 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.2 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.18 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.16 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.12 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.11 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.1 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.08 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.07 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.04 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.01 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.0 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.98 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 98.98 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.96 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 98.94 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.89 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.88 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.88 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.87 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.83 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.83 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.82 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.79 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.78 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.74 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.74 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.73 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.72 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.68 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.67 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.65 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.65 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.65 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.62 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.62 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.61 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.6 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.58 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.56 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.55 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.51 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.49 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.48 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.48 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.47 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.47 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.46 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.45 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.45 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.44 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.42 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.41 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.39 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.39 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.38 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.35 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.32 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.29 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.28 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.28 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.27 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.27 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.27 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.25 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.23 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.23 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.21 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.17 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.15 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.13 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.13 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.13 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.08 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.06 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.02 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.93 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.92 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.9 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.88 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.85 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.8 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.8 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 97.73 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.72 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.71 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.7 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.7 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.67 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.66 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.65 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.65 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.64 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.64 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.6 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.6 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.58 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.58 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.54 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.53 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.53 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.52 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.49 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.46 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.44 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.44 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.4 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.4 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.39 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.38 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.37 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.36 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.36 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.34 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.34 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.3 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.28 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.27 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.24 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.2 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.19 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.15 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.12 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.12 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.12 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.11 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.1 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.1 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 97.08 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.01 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.0 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.97 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.92 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.9 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.89 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.84 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.76 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.75 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.74 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.71 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.7 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.64 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.63 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.56 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.46 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.46 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.46 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.43 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 96.41 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.33 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.28 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.21 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.11 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 96.1 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.04 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.03 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.0 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.96 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.86 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.75 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.7 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.65 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 95.61 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.6 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.54 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.51 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.38 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.36 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.34 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.22 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.19 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.19 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.18 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.14 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.09 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.82 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.78 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.76 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.72 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.66 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.55 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.55 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 94.44 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.24 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.22 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.97 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 93.89 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 93.68 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.54 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.47 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.36 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.33 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.31 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 93.17 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 93.16 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.15 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 93.14 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.95 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 92.82 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 92.66 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 92.58 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.56 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 92.47 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.32 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.3 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 92.3 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.26 | |
| PRK09687 | 280 | putative lyase; Provisional | 92.06 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.01 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.93 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.89 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 91.78 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 91.67 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.66 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 91.19 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 90.94 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 90.9 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 90.79 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.69 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.66 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 90.65 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 90.51 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 90.45 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 90.42 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 89.5 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 89.34 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 89.34 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.08 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.7 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.56 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.5 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.27 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 88.25 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.04 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 87.96 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 87.55 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 87.03 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.98 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 86.94 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 86.81 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 86.68 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 85.85 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 85.81 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.8 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.7 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.64 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 85.63 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.63 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.6 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 85.34 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.21 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 84.69 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.5 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 84.25 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.13 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.99 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 83.96 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 83.19 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 82.57 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.41 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.41 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 81.91 | |
| PRK09687 | 280 | putative lyase; Provisional | 81.76 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 81.53 | |
| PF09477 | 116 | Type_III_YscG: Bacterial type II secretion system | 81.53 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 80.95 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 80.91 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 80.24 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 80.14 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-103 Score=807.67 Aligned_cols=474 Identities=37% Similarity=0.658 Sum_probs=465.4
Q ss_pred CccCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHH
Q 038542 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSW 80 (475)
Q Consensus 1 M~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~ 80 (475)
|++.|+.||..||+.++.+|++.|+++.+.++|..+.+.|+.||..++|+|+++|+++| ++++|.++|++|+++|+++|
T Consensus 215 M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~~~vt~ 293 (697)
T PLN03081 215 MWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG-DIEDARCVFDGMPEKTTVAW 293 (697)
T ss_pred HHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC-CHHHHHHHHHhCCCCChhHH
Confidence 55678889999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
|+||.+|++.|++++|+++|++|...|+.||..||++++.+|++.|++++|.++|..|.+.|++||..+|++||++|+++
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
|++++|.++|++|.++|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|.+++|.++|+.|.
T Consensus 374 G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 374 GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
+.+|+.|+..+|++++++|++.|++++|.+++++|++.|+..+|++|+.+|+.+|+++.|..+++++.+.+|.+..+|..
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~ 533 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVV 533 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHH
Confidence 87899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccc
Q 038542 321 LSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 400 (475)
|+++|++.|+|++|.++++.|+++|+++.|++||+++++.+|.|++|+..||+.+++++.++++..+|++.||.||+.++
T Consensus 534 L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~~~ 613 (697)
T PLN03081 534 LLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEENEL 613 (697)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCChhhhhhhhhhhhHHHHHHHhccCCCCCCcEEEecccccCcCcchhhHHHHhHhCceEEeecCCcccccCC
Q 038542 401 LLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~~r~i~~rd~~~~h~f~~ 475 (475)
++++++++++..+.+||||||++|||+++|+|.||||+||||+|+|||+|+||||+++||||||||++|||||+|
T Consensus 614 ~~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~ 688 (697)
T PLN03081 614 LPDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRICKDCHKVIKFIALVTKREIVVRDASRFHHFKL 688 (697)
T ss_pred hccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEECCCchhhHHHHhhhcceEEEEecCCccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-100 Score=802.44 Aligned_cols=471 Identities=39% Similarity=0.726 Sum_probs=462.6
Q ss_pred CccCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHH
Q 038542 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSW 80 (475)
Q Consensus 1 M~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~ 80 (475)
|++.|+.||..||++++.+|++.|+++.|.++|+.+.+.|+.|+..++|+|+++|+++| ++++|.++|++|.++|+++|
T Consensus 380 M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~vf~~m~~~d~vs~ 458 (857)
T PLN03077 380 MEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCK-CIDKALEVFHNIPEKDVISW 458 (857)
T ss_pred HHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcC-CHHHHHHHHHhCCCCCeeeH
Confidence 56789999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
|+||.+|+++|+.++|+++|++|.. +++||..||++++.+|++.|+++.+.++|..+.+.|+.++..++|+||++|+++
T Consensus 459 ~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~ 537 (857)
T PLN03077 459 TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC 537 (857)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence 9999999999999999999999986 699999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
|++++|.++|+.+ .+|+++||+||.+|+++|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.
T Consensus 538 G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~ 616 (857)
T PLN03077 538 GRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616 (857)
T ss_pred CCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 9999999999999 899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
+.+|+.|+..+|++|+++|++.|++++|.+++++|+++||..+|++|+.+|..+|+.+.|+.+.+++.+++|++...|..
T Consensus 617 ~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~l 696 (857)
T PLN03077 617 EKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYIL 696 (857)
T ss_pred HHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHH
Confidence 76899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccc
Q 038542 321 LSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEV 400 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~ 400 (475)
|.++|+..|+|++|.++++.|+++|++++||+||+++++.+|.|++++..||+.++|+..|+++..+|++.||.||+..+
T Consensus 697 l~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~~~~~ 776 (857)
T PLN03077 697 LCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGSESSS 776 (857)
T ss_pred HHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCChhhhhhhhhhhhHHHHHHHhccCCCCCCcEEEecccccCcCcchhhHHHHhHhCceEEeecCCcccccCC
Q 038542 401 LLDINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHFKD 475 (475)
Q Consensus 401 ~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~~r~i~~rd~~~~h~f~~ 475 (475)
+ ++++++|+..+.+||||||++|||++||++.||||+||||+|+|||+++||||++++|||||||++|||||+|
T Consensus 777 ~-~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c~dch~~~k~~s~~~~r~i~~rd~~rfh~f~~ 850 (857)
T PLN03077 777 M-DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMCENCHNTVKFISKIVRREISVRDTEQFHHFKD 850 (857)
T ss_pred c-cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeCccHHHHHHHHHHHhCeEEEEecCCcceeCCC
Confidence 7 5588899999999999999999999999999999999999999999999999999999999999999999996
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-62 Score=514.19 Aligned_cols=449 Identities=26% Similarity=0.422 Sum_probs=405.6
Q ss_pred CccCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHH
Q 038542 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSW 80 (475)
Q Consensus 1 M~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~ 80 (475)
|++.|++||.+||++++++|+..+++..+.++|..+.+.|+.||..++|+||.+|+++| +++.|.++|++|+++|+++|
T Consensus 178 M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~d~~s~ 256 (857)
T PLN03077 178 MLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG-DVVSARLVFDRMPRRDCISW 256 (857)
T ss_pred HHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC-CHHHHHHHHhcCCCCCcchh
Confidence 55679999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
|+||.+|++.|++++|+++|.+|...|+.||..||+.++.+|++.|+++.|.+++..+.+.|+.||..+||+|+++|+++
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 161 GDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
|++++|.++|++|..+|+++||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
+. |+.|+..+|++||++|+++|++++|.++|++|. ++|..+|+++|.+|++.|+.++|..+|++|.+.-+++..+|..
T Consensus 417 ~~-g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~ 494 (857)
T PLN03077 417 RK-GLISYVVVANALIEMYSKCKCIDKALEVFHNIP-EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIA 494 (857)
T ss_pred Hh-CCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHH
Confidence 96 999999999999999999999999999999996 5799999999999999999999999999998765667788888
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECC----------------------EEEEEEeCCCCCccHHHHH
Q 038542 321 LSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDN----------------------EIYEFVCGDKSHHQSKEIY 378 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~----------------------~~~~~~~~~~~~~~~~~~~ 378 (475)
++.+|++.|+.+.+.+++..|.+.|+.++.......++. ....++.++..|++.+++.
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~ 574 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAV 574 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHH
Confidence 888888888888888888888877776543221111100 0001355677788888888
Q ss_pred HHHHHHHHHHHHcCcccCCccccccCChhhhhhhhh---hhhHHHHHHHhccCCCCCCcEEEecccccCcCcchhhHHHH
Q 038542 379 EMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALN---KHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFIS 455 (475)
Q Consensus 379 ~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~---~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is 455 (475)
+.+++ |.+.|+.||..++...+..+.+.+.+. ...+.+...+|+.|...++. ++++.+.++|+..+|.++|.
T Consensus 575 ~lf~~----M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~-~lv~~l~r~G~~~eA~~~~~ 649 (857)
T PLN03077 575 ELFNR----MVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA-CVVDLLGRAGKLTEAYNFIN 649 (857)
T ss_pred HHHHH----HHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH-HHHHHHHhCCCHHHHHHHHH
Confidence 77776 888999999999998888777766653 34555666788888877666 89999999999999999999
Q ss_pred hH
Q 038542 456 KI 457 (475)
Q Consensus 456 ~~ 457 (475)
+|
T Consensus 650 ~m 651 (857)
T PLN03077 650 KM 651 (857)
T ss_pred HC
Confidence 87
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-60 Score=490.17 Aligned_cols=442 Identities=23% Similarity=0.336 Sum_probs=399.1
Q ss_pred CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHH
Q 038542 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI 84 (475)
Q Consensus 5 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li 84 (475)
++.||..||++++.+|++.++++.|.++|..|.+.|+.||..+||.|+++|+++| +++.|.++|++|++||+++||++|
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g-~~~~A~~lf~~m~~~~~~t~n~li 196 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG-MLIDARRLFDEMPERNLASWGTII 196 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCC-CHHHHHHHHhcCCCCCeeeHHHHH
Confidence 5889999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 164 (475)
.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|..+.+.+++..+.+.|+.||..+|++||++|+++|+++
T Consensus 197 ~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~ 276 (697)
T PLN03081 197 GGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIE 276 (697)
T ss_pred HHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 038542 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244 (475)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 244 (475)
+|.++|++|.++|+++||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+. |
T Consensus 277 ~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g 355 (697)
T PLN03081 277 DARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-G 355 (697)
T ss_pred HHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999996 9
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCchHHHHHH
Q 038542 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNE-PMHESNYVLLSH 323 (475)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~ 323 (475)
+.||..+|++||++|+++|++++|.++|++|. +||..+|++||.+|+++|+.++|.++|++|.+.+ .++..+|..++.
T Consensus 356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~ 434 (697)
T PLN03081 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLS 434 (697)
T ss_pred CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999996 5899999999999999999999999999999876 456789999999
Q ss_pred HHHhccChhHHHHHHHHHHh-CCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccc
Q 038542 324 IYAKLLRWEKKTKIREVMDK-RGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLL 402 (475)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~-~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~ 402 (475)
+|.+.|+.++|.++|+.|.+ .|+.|+...... ++......++.+++++.++ +.++.||..++..
T Consensus 435 a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~--------li~~l~r~G~~~eA~~~~~-------~~~~~p~~~~~~~ 499 (697)
T PLN03081 435 ACRYSGLSEQGWEIFQSMSENHRIKPRAMHYAC--------MIELLGREGLLDEAYAMIR-------RAPFKPTVNMWAA 499 (697)
T ss_pred HHhcCCcHHHHHHHHHHHHHhcCCCCCccchHh--------HHHHHHhcCCHHHHHHHHH-------HCCCCCCHHHHHH
Confidence 99999999999999999986 587775433222 3445566788888876654 4588999888777
Q ss_pred cCChhhhhhhhhhhhHHHHHHHhccCCCCCCcEEEecccccCcCcchhhHHHHhHhCceEEe
Q 038542 403 DINEEDKEDALNKHSEKLAIAFALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVV 464 (475)
Q Consensus 403 ~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~~r~i~~ 464 (475)
.+..+...+.+..-.+-....+++.+...+..+.+++-+..+|+-.+|.++...|.++.+..
T Consensus 500 Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k 561 (697)
T PLN03081 500 LLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSM 561 (697)
T ss_pred HHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCcc
Confidence 76666554443322222222345655545566678888999999999999999999998743
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-58 Score=478.34 Aligned_cols=448 Identities=19% Similarity=0.239 Sum_probs=386.2
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC----CCChhHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS----ERDSVSWSAM 83 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~----~~~~~~~~~l 83 (475)
||..||+.+|.+|++.|+++.|.++|+.|.+.|+.||..+|++||.+|+++| +++.|.++|++|. .||..+||+|
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G-~vd~A~~vf~eM~~~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSG-KVDAMFEVFHEMVNAGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCc-CHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 9999999999998 4899999999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH--cCCCCCccHHHHHHHHHHhcC
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK--QMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~y~~~g 161 (475)
|.+|++.|++++|+++|++|...|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.||..+|++||++|+++|
T Consensus 514 I~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G 593 (1060)
T PLN03218 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG 593 (1060)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999999999999999986 678999999999999999999
Q ss_pred CHHHHHHHHHhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 038542 162 DVDKALKLFRSMNGR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237 (475)
Q Consensus 162 ~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 237 (475)
++++|.++|+.|.+. +..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+
T Consensus 594 ~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~ 673 (1060)
T PLN03218 594 QVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQ 673 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999754 6699999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CC
Q 038542 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNE-PM 313 (475)
Q Consensus 238 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~ 313 (475)
.|.+. |+.|+..+|+.||.+|+++|++++|.++|++| ++.||..+|++||.+|++.|++++|.++|++|.+.+ .+
T Consensus 674 eM~k~-G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P 752 (1060)
T PLN03218 674 DARKQ-GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP 752 (1060)
T ss_pred HHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 99996 99999999999999999999999999999999 789999999999999999999999999999999876 55
Q ss_pred CCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEEC-------------CEEEEEEeCC--CCCccHHHHH
Q 038542 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD-------------NEIYEFVCGD--KSHHQSKEIY 378 (475)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~-------------~~~~~~~~~~--~~~~~~~~~~ 378 (475)
+..+|..++.+|.+.|++++|.++++.|.+.|+.++.......+. ..+..|-.+. .......+++
T Consensus 753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al 832 (1060)
T PLN03218 753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL 832 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence 778999999999999999999999999999999887643332221 0001111110 0111234455
Q ss_pred HHHHHHHHHHHHcCcccCCccccccCChhhhhhhhhhhhHHHHHHHhccCCCCCCc--EEEecccccCcCcchhhHHHHh
Q 038542 379 EMLDEMGRKMKKAGYVPTTSEVLLDINEEDKEDALNKHSEKLAIAFALLKTPPGTP--IRIVKNLRVCNDCHSATKFISK 456 (475)
Q Consensus 379 ~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~~~~~e~la~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~is~ 456 (475)
.. .++|.+.|+.||..++...+.-..+.+.. ...+.+-..+++.+.+++.. .++++.+ |..-++|+.+...
T Consensus 833 ~l----f~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~-~~~~~m~~~m~~~~~~~~~~~y~~Li~g~--~~~~~~A~~l~~e 905 (1060)
T PLN03218 833 MV----YRETISAGTLPTMEVLSQVLGCLQLPHDA-TLRNRLIENLGISADSQKQSNLSTLVDGF--GEYDPRAFSLLEE 905 (1060)
T ss_pred HH----HHHHHHCCCCCCHHHHHHHHHHhcccccH-HHHHHHHHHhccCCCCcchhhhHHHHHhh--ccChHHHHHHHHH
Confidence 44 45599999999999987776322222222 22345555677777776643 2455544 2122589999999
Q ss_pred HhCceEEe
Q 038542 457 IYNREIVV 464 (475)
Q Consensus 457 ~~~r~i~~ 464 (475)
+..+.|+-
T Consensus 906 m~~~Gi~p 913 (1060)
T PLN03218 906 AASLGVVP 913 (1060)
T ss_pred HHHcCCCC
Confidence 98887653
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-53 Score=441.37 Aligned_cols=390 Identities=17% Similarity=0.215 Sum_probs=295.7
Q ss_pred CCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHH
Q 038542 7 SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIG 85 (475)
Q Consensus 7 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~ 85 (475)
.+|...|..++..|++.|+++.|.++|+.|.+.|+ +++..+++.++..|.+.| .+++|.++|+.|..||..+||.++.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g-~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQR-AVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCC-CHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45667788888888888888888888888888774 456666777777777777 7888888888887778888888888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHH
Q 038542 86 GYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 165 (475)
+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|++||++|++.|++++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ee 525 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAK 525 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHH
Confidence 88888888888888888887788888888888888888888888888888888877777788888888888888888888
Q ss_pred HHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 166 ALKLFRSMN----GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE--AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 166 A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
|.++|++|. .||..+||+||.+|++.|++++|.++|++|.. .|+.||..||++++.+|++.|++++|.++|+.|
T Consensus 526 Al~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888887775 35777888888888888888888888888765 567788888888888888888888888888887
Q ss_pred hhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC
Q 038542 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNE-PMHE 315 (475)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~~~ 315 (475)
.+. |+.|+..+|+.+|.+|++.|++++|.++|++| ++.||..+|++++.+|++.|++++|.+++++|.+.+ +++.
T Consensus 606 ~e~-gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 606 HEY-NIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHc-CCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 774 77788888888888888888888888888777 677787888888888888888888888888877766 4566
Q ss_pred chHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccc
Q 038542 316 SNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395 (475)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 395 (475)
.+|..|+.+|++.|++++|.++|++|.+.|+.|+...... ++.++...++.+++.+.+++ |++.|+.|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~--------LI~gy~k~G~~eeAlelf~e----M~~~Gi~P 752 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNA--------LITALCEGNQLPKALEVLSE----MKRLGLCP 752 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHH--------HHHHHHHCCCHHHHHHHHHH----HHHcCCCC
Confidence 7778888888888888888888888877776664432111 34455566777777766555 66777777
Q ss_pred CCccccccCChhhhh
Q 038542 396 TTSEVLLDINEEDKE 410 (475)
Q Consensus 396 d~~~~~~~~~~~~~~ 410 (475)
|..++...+..+.+.
T Consensus 753 d~~Ty~sLL~a~~k~ 767 (1060)
T PLN03218 753 NTITYSILLVASERK 767 (1060)
T ss_pred CHHHHHHHHHHHHHC
Confidence 777766655444443
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=221.54 Aligned_cols=106 Identities=65% Similarity=1.003 Sum_probs=95.7
Q ss_pred CccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCChhhh--------hhhhhhhhHHHHH
Q 038542 351 GSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDINEEDK--------EDALNKHSEKLAI 422 (475)
Q Consensus 351 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~~~~~--------~~~~~~~~e~la~ 422 (475)
+++|+.+ |.|++|+.+||+. ++..++...||.|++..+.++++++++ +..+.+||||||+
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~d~~~~~~~~~~HSEKlAi 69 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVGHDVDEEEKHDYDEEEKEESLCYHSEKLAI 69 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhCCCchhhhhhhcccccchhhhhccHHHHHH
Confidence 6788876 8999999999998 444557788999999999988877655 5688999999999
Q ss_pred HHhccCCCCCCcEEEeccc-ccCcCcchhhHHHHhHhCceEEeecCCcccccC
Q 038542 423 AFALLKTPPGTPIRIVKNL-RVCNDCHSATKFISKIYNREIVVRDRHRFHHFK 474 (475)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~is~~~~r~i~~rd~~~~h~f~ 474 (475)
+||++++ +|+||+ |||+|||+|+|+||+++||+|||||++||||||
T Consensus 70 afgli~~------~vvkn~~RvC~DCH~~~K~iS~~~~ReIiVRD~~rfHhFk 116 (116)
T PF14432_consen 70 AFGLINT------RVVKNLKRVCGDCHSFIKFISKITGREIIVRDSNRFHHFK 116 (116)
T ss_pred Hhcccce------eEEecCCccchHHHHHHHHHHHHHCeEEEEeCCCeeeeCC
Confidence 9999998 899999 999999999999999999999999999999997
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-21 Score=209.47 Aligned_cols=329 Identities=8% Similarity=0.032 Sum_probs=244.9
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMI 84 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li 84 (475)
.+..++..+...+...|+.++|..+++.+.+.+ +.+...+..+...|.+.| ++++|..+++.+.+ .+..+|..+.
T Consensus 531 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~ 608 (899)
T TIGR02917 531 KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKG-QLKKALAILNEAADAAPDSPEAWLMLG 608 (899)
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355677777788888888888888888887764 556667777888888887 88888888887753 3567788888
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 164 (475)
.+|.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|..++..+.+.. +.+...+..++..+...|+++
T Consensus 609 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 686 (899)
T TIGR02917 609 RAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTE 686 (899)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 88888888888888888887653 3355667777777888888888888888887653 335667777888888888888
Q ss_pred HHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 165 KALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 165 ~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
+|..+++.+.+. +...|..+...+...|++++|.+.|+++...+ |+..++..+..++.+.|+.++|.+.++.+.+
T Consensus 687 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 764 (899)
T TIGR02917 687 SAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK 764 (899)
T ss_pred HHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888877532 45667777777888888888888888877753 4446666777777788888888888877776
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
..+.+...+..+...|.+.|++++|...|+++ .. ++++.+++.+...+...|+ ++|...++++.+..|.++..+.
T Consensus 765 --~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~ 841 (899)
T TIGR02917 765 --THPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILD 841 (899)
T ss_pred --hCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHH
Confidence 34556677777777788888888888887776 22 2356677777777777777 6677777777777777777777
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 320 LLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.++.+|...|++++|.+.++++.+.+
T Consensus 842 ~~~~~~~~~g~~~~A~~~~~~a~~~~ 867 (899)
T TIGR02917 842 TLGWLLVEKGEADRALPLLRKAVNIA 867 (899)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777777777777777777777655
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-21 Score=207.55 Aligned_cols=332 Identities=14% Similarity=0.105 Sum_probs=274.6
Q ss_pred CCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHH
Q 038542 7 SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAM 83 (475)
Q Consensus 7 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~l 83 (475)
+++..++..+...+...|++++|.+.++.+.+.. +.+...+..+...+.+.| ++++|.+.|+++.+ .+..++..+
T Consensus 462 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEG-NPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 4456677777788888888888888888887754 455566777777888877 88888888887753 366788888
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 163 (475)
...+.+.|++++|..+|.++...+ +.+...+..+...+...|++++|..+++.+.+.. +.+..++..+..+|.+.|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 888888888888888888887653 3456677778888888899999998888887653 45677888899999999999
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 164 DKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 164 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
++|...|+++.+ .+...|..+...|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|.++++.+.
T Consensus 618 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 696 (899)
T TIGR02917 618 NKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ 696 (899)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999988753 356778888888999999999999999988753 4457788888899999999999999999988
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
.. .+++...+..+...+.+.|++++|.+.|+.+ ...|+..++..+..++...|++++|.+.++++.+..|.+...+.
T Consensus 697 ~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~ 774 (899)
T TIGR02917 697 KQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPNDAVLRT 774 (899)
T ss_pred hh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 73 3556778888999999999999999999988 55676678888999999999999999999999999999999999
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 320 LLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.++.+|...|++++|.+.++++.+..
T Consensus 775 ~la~~~~~~g~~~~A~~~~~~~~~~~ 800 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIKHYRTVVKKA 800 (899)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-20 Score=182.80 Aligned_cols=293 Identities=13% Similarity=0.067 Sum_probs=238.4
Q ss_pred HHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCC
Q 038542 54 MYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD---EITMVTVLSACTDLGA 127 (475)
Q Consensus 54 ~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t~~~ll~~~~~~~~ 127 (475)
.+...| +++.|...|.++.+ | +..+|..+...+...|++++|..+++.+...+..++ ..++..+...+...|+
T Consensus 44 ~~~~~~-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 44 NFLLNE-QPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHhcC-ChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345566 99999999999875 3 556888999999999999999999999887532222 2456777888899999
Q ss_pred hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC--------hhHHHHHHHHHHHcCChHHHHH
Q 038542 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT--------IVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~ 199 (475)
++.|..++..+.+.. +.+..+++.++.+|.+.|++++|.+.|+.+.+.+ ...|..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 999999999998753 3467788899999999999999999999886431 1245667778889999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE 278 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 278 (475)
.|+++.+.. +.+...+..+...+.+.|++++|.++++++... +......++..++.+|.+.|++++|...++++ ...
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999998853 334567788889999999999999999999863 32223467888999999999999999999998 556
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh---ccChhHHHHHHHHHHhCCCccCCC
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK---LLRWEKKTKIREVMDKRGMKKIPG 351 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~ 351 (475)
|+...+..+...+.+.|++++|..+++++.+..|++. .+..++..+.. .|+.+++..+++.|.+++++++|.
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 7777778899999999999999999999999988764 56666666554 568999999999999999988886
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-19 Score=176.23 Aligned_cols=287 Identities=14% Similarity=0.127 Sum_probs=241.2
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC-C------hhHHHHHHHHHHHc
Q 038542 18 KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER-D------SVSWSAMIGGYARL 90 (475)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~-~------~~~~~~li~~~~~~ 90 (475)
..+...|+++.|...+..+.+.+ +.+..++..+...|.+.| ++++|..+++.+... + ...|..+...|.+.
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g-~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRG-EVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcC-cHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 34567799999999999999874 456678899999999998 999999999987652 1 25688999999999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHhcCCHHHH
Q 038542 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV----GLCNALIDMFAKCGDVDKA 166 (475)
Q Consensus 91 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g~~~~A 166 (475)
|++++|+.+|.++.+.. +++..++..+...+...|++++|...+..+.+.+..+.. ..+..+...|.+.|++++|
T Consensus 121 g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 199 (389)
T PRK11788 121 GLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAA 199 (389)
T ss_pred CCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999998753 456778999999999999999999999999987543322 2456778889999999999
Q ss_pred HHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 038542 167 LKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243 (475)
Q Consensus 167 ~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 243 (475)
...|+++.+ .+...+..+...|.+.|++++|.++|+++.+.+......++..+..+|...|++++|...++.+.+.
T Consensus 200 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 278 (389)
T PRK11788 200 RALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE- 278 (389)
T ss_pred HHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 999998763 2456888899999999999999999999988642222467888999999999999999999998863
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhC
Q 038542 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCA---RGELKLAESITKRLIGN 310 (475)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~ 310 (475)
.|+...+..++..+.+.|++++|..+++++ ...|+...++.++..+.. .|+.+++..+++++.+.
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 567777789999999999999999999877 667999999988887764 56889999999988753
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-17 Score=170.69 Aligned_cols=325 Identities=11% Similarity=0.010 Sum_probs=264.2
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHH
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYA 88 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~ 88 (475)
-...++..+.+.|+++.|..+++..+... +.+......++......| +++.|...|+++.+ | +...|..+...+.
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g-~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~ 121 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASS-QPDAVLQVVNKLLAVNVCQPEDVLLVASVLL 121 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 34556778889999999999999998875 333444555556666677 99999999999864 3 6678999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 038542 89 RLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167 (475)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 167 (475)
+.|++++|+..++++... .| +...+..+...+...|++++|...+..+...... +...+..+ ..+...|++++|.
T Consensus 122 ~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~ 197 (656)
T PRK15174 122 KSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDH 197 (656)
T ss_pred HcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHH
Confidence 999999999999999875 45 4667778888999999999999999988776433 33344333 3478899999999
Q ss_pred HHHHhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH----HHHHHHHh
Q 038542 168 KLFRSMNGR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK----GREYFDSM 239 (475)
Q Consensus 168 ~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~----a~~~~~~m 239 (475)
..++.+.+. +...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++...|++++ |...|+..
T Consensus 198 ~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 198 DLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 999987543 23444556678899999999999999999864 4456778889999999999986 79999988
Q ss_pred hhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.+ -.+.+...+..+...+.+.|++++|...+++. ...| +...+..+..++...|++++|...++++.+..|.+...
T Consensus 277 l~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~ 354 (656)
T PRK15174 277 LQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKW 354 (656)
T ss_pred Hh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHH
Confidence 86 33445678899999999999999999999988 4455 56678888999999999999999999999999987766
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+..+..++...|++++|...++...+..
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 6677888999999999999999887653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.83 E-value=6e-17 Score=165.80 Aligned_cols=248 Identities=13% Similarity=0.033 Sum_probs=158.8
Q ss_pred ChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 038542 92 LSTDAIDLFRQMQISG-VCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169 (475)
Q Consensus 92 ~~~~A~~~~~~m~~~g-~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 169 (475)
++++|++.|++....+ ..| +...+..+...+...|++++|...++..++.. +.+...|..+...|...|++++|...
T Consensus 309 ~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 309 SYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4555555555555433 123 23344555555666777777777777776652 22344666667777777777777777
Q ss_pred HHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC
Q 038542 170 FRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246 (475)
Q Consensus 170 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 246 (475)
|++..+ .+...|..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|+...+ ..+
T Consensus 388 ~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P 464 (615)
T TIGR00990 388 FDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFP 464 (615)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCC
Confidence 776542 245667777777777777777777777777643 33455566667777777777777777777765 233
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-------H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-------P-IIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-------~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.+...++.+..++...|++++|.+.|++. .+.|+ . ..++..+..+...|++++|.++++++++.+|.+...
T Consensus 465 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a 544 (615)
T TIGR00990 465 EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIA 544 (615)
T ss_pred CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 44567777777777777777777777775 33331 1 111222222334577778888888777777777777
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+..++.+|...|++++|.+.+++..+
T Consensus 545 ~~~la~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 545 VATMAQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 77778888888888888887777654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-18 Score=158.99 Aligned_cols=325 Identities=13% Similarity=0.105 Sum_probs=255.1
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC----------------
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---------------- 74 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---------------- 74 (475)
.+|+.+...+-..|+++.|..+++.+++.. +.....|..+..++...| +.+.|.+.|.+..+
T Consensus 117 e~ysn~aN~~kerg~~~~al~~y~~aiel~-p~fida~inla~al~~~~-~~~~a~~~~~~alqlnP~l~ca~s~lgnLl 194 (966)
T KOG4626|consen 117 EAYSNLANILKERGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQG-DLELAVQCFFEALQLNPDLYCARSDLGNLL 194 (966)
T ss_pred HHHHHHHHHHHHhchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcC-CCcccHHHHHHHHhcCcchhhhhcchhHHH
Confidence 467777777778888888888888887764 445566777777777766 76666666654322
Q ss_pred --------------------C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHH
Q 038542 75 --------------------R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD-EITMVTVLSACTDLGALEVGK 132 (475)
Q Consensus 75 --------------------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~ 132 (475)
| =.+.|+.|...+-.+|+...|++.|++... +.|+ ...|-.|-..+...+.++.|.
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~f~dAYiNLGnV~ke~~~~d~Av 272 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPNFLDAYINLGNVYKEARIFDRAV 272 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCcchHHHhhHHHHHHHHhcchHHH
Confidence 1 134677777777777888888888877776 3555 457777777788888888887
Q ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 038542 133 WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209 (475)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 209 (475)
..+.+..... +-...++..|...|-..|++|-|+..+++..+. -..+|+.|..++-..|+..+|...+.+.....
T Consensus 273 s~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~- 350 (966)
T KOG4626|consen 273 SCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC- 350 (966)
T ss_pred HHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-
Confidence 7777766542 223455666777788888888888888877643 34789999999999999999999999988852
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHH
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRT 286 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~ 286 (475)
+-.....+.|...+...|.+++|..+|....+ +.|. ...++.|...|-+.|++++|...+++. .++|+ ...|+.
T Consensus 351 p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~N 427 (966)
T KOG4626|consen 351 PNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSN 427 (966)
T ss_pred CccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHh
Confidence 33456788899999999999999999988774 3444 467888999999999999999999988 78886 568999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+...|...|+++.|.+.+.+++..+|.-..++..|..+|-..|+..+|.+-++...+.
T Consensus 428 mGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 428 MGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred cchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 9999999999999999999999999998899999999999999999999999887763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.8e-16 Score=160.58 Aligned_cols=298 Identities=11% Similarity=-0.015 Sum_probs=242.2
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGY 87 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~ 87 (475)
..+..++.+....|+++.|...++.+.+.. +.+...+..+...+.+.| ++++|...|++..+ | +...|..+...+
T Consensus 77 ~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g-~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l 154 (656)
T PRK15174 77 DLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSK-QYATVADLAEQAWLAFSGNSQIFALHLRTL 154 (656)
T ss_pred hHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345555566778999999999999999875 556678888889999998 99999999999865 3 677899999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 038542 88 ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 167 (475)
...|++++|...++.+..... .+...+.. +..+...|++++|...++.+.+....++......+...+.+.|++++|.
T Consensus 155 ~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~ 232 (656)
T PRK15174 155 VLMDKELQAISLARTQAQEVP-PRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAI 232 (656)
T ss_pred HHCCChHHHHHHHHHHHHhCC-CCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHH
Confidence 999999999999998876532 22333333 3447889999999999999887654444555566678899999999999
Q ss_pred HHHHhcCC---CChhHHHHHHHHHHHcCChHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 168 KLFRSMNG---RTIVSWTSVIAGLAMHGRGLE----AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 168 ~~~~~~~~---~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
..|++... .+...+..+...|...|++++ |+..|++..+.. +.+...+..+...+...|++++|...++...
T Consensus 233 ~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al 311 (656)
T PRK15174 233 QTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSL 311 (656)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99998763 356788889999999999986 899999998863 4456788899999999999999999999988
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPII-WRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
.. -+.+...+..+..+|.+.|++++|...|+++ ...|+... +..+..++...|+.++|...++++.+..|.+.
T Consensus 312 ~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 312 AT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred Hh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 63 3334567788899999999999999999988 45565434 44456788999999999999999999988753
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-15 Score=154.15 Aligned_cols=359 Identities=10% Similarity=-0.066 Sum_probs=265.5
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHH
Q 038542 13 YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYAR 89 (475)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~ 89 (475)
+...-..+.+.|+++.|...|+.+++. .|+...|..+...|.+.| ++++|.+.++...+ | +...|..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~-~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALG-DWEKVVEDTTAALELDPDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhC-CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 445566788899999999999999876 678888999999999999 99999999988764 3 56789999999999
Q ss_pred cCChhHHHHHHHHHHHCCC----------------------------CCC----HHHHHHHHH-----------------
Q 038542 90 LGLSTDAIDLFRQMQISGV----------------------------CPD----EITMVTVLS----------------- 120 (475)
Q Consensus 90 ~g~~~~A~~~~~~m~~~g~----------------------------~p~----~~t~~~ll~----------------- 120 (475)
.|++++|+.-|......+- .|. .......+.
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999876654432110 010 000000000
Q ss_pred ----------H------HhccCChHHHHHHHHHHHHcC-C-CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Chh
Q 038542 121 ----------A------CTDLGALEVGKWVESFIEKQM-V-NRSVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TIV 179 (475)
Q Consensus 121 ----------~------~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~ 179 (475)
. ....+.+++|...++...+.+ . +.....++.+...|...|++++|...|++..+ | +..
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~ 366 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ 366 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH
Confidence 0 011246788888898888765 2 23455788888899999999999999998764 3 456
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (475)
+|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|+...+ ..+.+...+..+..++
T Consensus 367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHH
Confidence 88888899999999999999999998863 44577888899999999999999999999886 3344567788888999
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH-------HHHHHHhccC
Q 038542 260 CRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL-------LSHIYAKLLR 330 (475)
Q Consensus 260 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~-------l~~~~~~~g~ 330 (475)
.+.|++++|...|++. ...| +...|+.+...+...|++++|...++++++..|.+...+.. ....|...|+
T Consensus 444 ~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~ 523 (615)
T TIGR00990 444 YKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQD 523 (615)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhh
Confidence 9999999999999987 4445 57888999999999999999999999999998765443321 1223344699
Q ss_pred hhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHH
Q 038542 331 WEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGR 386 (475)
Q Consensus 331 ~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 386 (475)
+++|.+++++..+.. ++....+..+ .......++.+++...+++..+
T Consensus 524 ~~eA~~~~~kAl~l~--p~~~~a~~~l-------a~~~~~~g~~~eAi~~~e~A~~ 570 (615)
T TIGR00990 524 FIEAENLCEKALIID--PECDIAVATM-------AQLLLQQGDVDEALKLFERAAE 570 (615)
T ss_pred HHHHHHHHHHHHhcC--CCcHHHHHHH-------HHHHHHccCHHHHHHHHHHHHH
Confidence 999999998876643 2221111110 1112234667777777776543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.6e-15 Score=163.77 Aligned_cols=316 Identities=13% Similarity=0.092 Sum_probs=208.6
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CC---hhHHHH----------
Q 038542 18 KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RD---SVSWSA---------- 82 (475)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~---~~~~~~---------- 82 (475)
.++...|++++|...++.+++.. +.+...+..|...|.+.| ++++|...|++..+ |+ ...|..
T Consensus 277 ~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g-~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 277 LAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQG-DRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 45667899999999999998874 557788889999999998 99999999988754 22 122322
Q ss_pred --HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 83 --MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 83 --li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
+...+.+.|++++|+..|+++.... +.+...+..+...+...|++++|.+.++++++.. +.+...+..+...|. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 2346778899999999999998863 3356677778888999999999999999998764 224445555555553 3
Q ss_pred CCHHHHHHHHHhcCCCC------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC
Q 038542 161 GDVDKALKLFRSMNGRT------------IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL 228 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~~------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~ 228 (475)
++.++|..+++.+.... ...+..+...+...|++++|++.|++..+.. +-+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 44555655555443211 1123334444555556666666665555532 1223344455555555566
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHH--------------------------------------------HHHHHHHHHcCC
Q 038542 229 VDKGREYFDSMKNDFGIIPKIEHY--------------------------------------------GCMVDMLCRSGR 264 (475)
Q Consensus 229 ~~~a~~~~~~m~~~~~~~p~~~~~--------------------------------------------~~li~~~~~~g~ 264 (475)
+++|...++.+.+. .+.+...+ ..+...+...|+
T Consensus 511 ~~~A~~~l~~al~~--~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~ 588 (1157)
T PRK11447 511 RSQADALMRRLAQQ--KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGK 588 (1157)
T ss_pred HHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCC
Confidence 66655555555431 11111111 123344555666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 265 VKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 265 ~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.++|.++++.-+ ++...+..+...+...|++++|...++++++..|.++.++..++.+|...|++++|.+.++...+
T Consensus 589 ~~eA~~~l~~~p--~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 589 EAEAEALLRQQP--PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred HHHHHHHHHhCC--CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 666666666332 34456667777788888888888888888888888888888888888888888888888876654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-15 Score=154.01 Aligned_cols=331 Identities=13% Similarity=0.044 Sum_probs=248.2
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHH
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIG 85 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~ 85 (475)
+...+..+..++...|++++|..+++.+++.. +.+...+..+...+.+.| ++++|...+++..+ | +.. |..+..
T Consensus 48 ~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~l~~~g-~~~eA~~~l~~~l~~~P~~~~-~~~la~ 124 (765)
T PRK10049 48 PARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLILTLADAG-QYDEALVKAKQLVSGAPDKAN-LLALAY 124 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHH-HHHHHH
Confidence 33457888889999999999999999988874 455667778888888988 99999999998864 3 556 888999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHH----------------------------------
Q 038542 86 GYARLGLSTDAIDLFRQMQISGVCPD-EITMVTVLSACTDLGALEV---------------------------------- 130 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~---------------------------------- 130 (475)
++...|+.++|+..++++.+. .|+ ...+..+..++...+..+.
T Consensus 125 ~l~~~g~~~~Al~~l~~al~~--~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~ 202 (765)
T PRK10049 125 VYKRAGRHWDELRAMTQALPR--APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT 202 (765)
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence 999999999999999999885 454 3344444444444444443
Q ss_pred ------------HHHHHHHHHHc-CCCCCcc-HH-HH---HHHHHHhcCCHHHHHHHHHhcCCCC--hhH--HHHHHHHH
Q 038542 131 ------------GKWVESFIEKQ-MVNRSVG-LC-NA---LIDMFAKCGDVDKALKLFRSMNGRT--IVS--WTSVIAGL 188 (475)
Q Consensus 131 ------------a~~~~~~~~~~-~~~~~~~-~~-~~---li~~y~~~g~~~~A~~~~~~~~~~~--~~~--~~~li~~~ 188 (475)
|...++.+.+. ...|+.. .+ .+ .+.++...|++++|+..|+++...+ ... -..+..+|
T Consensus 203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~y 282 (765)
T PRK10049 203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAY 282 (765)
T ss_pred cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHH
Confidence 33344444432 1122221 11 11 1234457799999999999987542 111 12256789
Q ss_pred HHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC----------CCCC---hhHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPP---DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG----------IIPK---IEHY 252 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----------~~p~---~~~~ 252 (475)
...|++++|+..|+++.+..... .......+..++...|++++|..+++.+..... -.|+ ...+
T Consensus 283 l~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~ 362 (765)
T PRK10049 283 LKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQ 362 (765)
T ss_pred HhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHH
Confidence 99999999999999987643111 124466677788999999999999999886310 1123 2345
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
..+...+...|++++|.+.++++ ...| +...+..+...+...|++++|++.++++++..|++...+..++..+...|+
T Consensus 363 ~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 363 SLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCC
Confidence 67788899999999999999998 3344 678899999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhC
Q 038542 331 WEKKTKIREVMDKR 344 (475)
Q Consensus 331 ~~~a~~~~~~m~~~ 344 (475)
|++|.++++.+.+.
T Consensus 443 ~~~A~~~~~~ll~~ 456 (765)
T PRK10049 443 WRQMDVLTDDVVAR 456 (765)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-14 Score=158.96 Aligned_cols=252 Identities=14% Similarity=0.050 Sum_probs=194.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 82 AMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
.+...+...|++++|++.|++..+. .| +...+..+...+.+.|++++|...++.+.+.. +.+...+..+...+.+.
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~ 542 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGS 542 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhC
Confidence 3455566778888888888888775 34 45566677777888888888888888887653 23444555555667778
Q ss_pred CCHHHHHHHHHhcCCC----Ch---------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC
Q 038542 161 GDVDKALKLFRSMNGR----TI---------VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG 227 (475)
Q Consensus 161 g~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g 227 (475)
|+.++|...++.+... +. ..+..+...+...|+.++|..+++. .+++...+..+...+.+.|
T Consensus 543 ~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g 617 (1157)
T PRK11447 543 DRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRG 617 (1157)
T ss_pred CCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcC
Confidence 8888888888877532 11 1123445678888999999998872 3556667778899999999
Q ss_pred CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038542 228 LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITK 305 (475)
Q Consensus 228 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 305 (475)
+.++|...|+...+ .-+.+...+..++..|...|++++|.+.++.. ...| +..++..+..++...|++++|.++++
T Consensus 618 ~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~ 695 (1157)
T PRK11447 618 DYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFN 695 (1157)
T ss_pred CHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999987 33456788999999999999999999999987 3444 56677778888999999999999999
Q ss_pred HHHhCCCCCCc------hHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 306 RLIGNEPMHES------NYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 306 ~~~~~~p~~~~------~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
++++..|.++. .+..+..++...|++++|.+.++....
T Consensus 696 ~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 696 RLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 99987655432 455678899999999999999988854
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=143.82 Aligned_cols=281 Identities=16% Similarity=0.148 Sum_probs=239.2
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhccCC--CC-hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 038542 47 VQNTLVHMYGSCEGGIELGRKVFDEMSE--RD-SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD-EITMVTVLSAC 122 (475)
Q Consensus 47 ~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~ 122 (475)
+|+.|...+-..| ++..|...|++... |+ ...|-.|...|...+.+++|+..|.+.... .|+ ...+..+...|
T Consensus 220 awsnLg~~f~~~G-ei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iY 296 (966)
T KOG4626|consen 220 AWSNLGCVFNAQG-EIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIY 296 (966)
T ss_pred eehhcchHHhhcc-hHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEE
Confidence 4555555555556 88888888888765 32 568999999999999999999999998874 665 56788888889
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHH
Q 038542 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TIVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 199 (475)
-..|.++.|...+++.++... --+..|+.|.+++-..|++.+|.+.+.+... + -..+.+.|...|...|.+++|..
T Consensus 297 yeqG~ldlAI~~Ykral~~~P-~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 297 YEQGLLDLAIDTYKRALELQP-NFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred eccccHHHHHHHHHHHHhcCC-CchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 999999999999999988642 2467899999999999999999999998763 2 45688889999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 038542 200 LFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI-EHYGCMVDMLCRSGRVKEAHEFIQKM-P 276 (475)
Q Consensus 200 l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~ 276 (475)
+|....+ +.|. ...++.|...|-+.|++++|...+++.. .+.|+. ..|+.+...|-..|+.+.|.+.+.+. .
T Consensus 376 ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 376 LYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 9999888 4565 4578999999999999999999999887 677774 78999999999999999999999887 6
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 277 IEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 277 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
+.|. ....+.|...|...|++.+|+..++..+++.|+.+.+|-.++.+.--..+|.+-.+
T Consensus 451 ~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D~d~ 511 (966)
T KOG4626|consen 451 INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTDYDK 511 (966)
T ss_pred cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccchHH
Confidence 7774 56788999999999999999999999999999999999999888776677766433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-14 Score=144.98 Aligned_cols=329 Identities=10% Similarity=-0.036 Sum_probs=252.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGY 87 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~ 87 (475)
.-..=.+....-.|+.++|.+++....... +.+...+..+...+.+.| ++++|.++|++..+ .+...+..++..+
T Consensus 16 ~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g-~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 16 NQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLK-QWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 334445667778899999999999988643 556667899999999998 99999999999543 3677888999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 038542 88 ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 167 (475)
...|++++|+..+++..... +.+.. +..+..++...|+.++|...++.+.+... .+..++..+..++...|..++|.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al 170 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPAL 170 (765)
T ss_pred HHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999998862 33455 77788889999999999999999998753 35556667778887778877666
Q ss_pred HHHHhcCC-------------------------------------------------CCh---hHH----HHHHHHHHHc
Q 038542 168 KLFRSMNG-------------------------------------------------RTI---VSW----TSVIAGLAMH 191 (475)
Q Consensus 168 ~~~~~~~~-------------------------------------------------~~~---~~~----~~li~~~~~~ 191 (475)
+.++.... .+. ..+ ...+.++...
T Consensus 171 ~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~ 250 (765)
T PRK10049 171 GAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLAR 250 (765)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHh
Confidence 65553322 000 000 0112345677
Q ss_pred CChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC--ChhHHHHHHHHHHHcCCHHHH
Q 038542 192 GRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP--KIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~g~~~~A 268 (475)
|++++|+..|+++.+.+.+ |+.. -..+..+|...|++++|..+|+.+.......+ .......+..++...|++++|
T Consensus 251 g~~~eA~~~~~~ll~~~~~~P~~a-~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA 329 (765)
T PRK10049 251 DRYKDVISEYQRLKAEGQIIPPWA-QRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGA 329 (765)
T ss_pred hhHHHHHHHHHHhhccCCCCCHHH-HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHH
Confidence 8999999999999887532 3322 22257789999999999999999875311111 134566777788999999999
Q ss_pred HHHHHhC-CCCC-------------C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccCh
Q 038542 269 HEFIQKM-PIEA-------------N---PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331 (475)
Q Consensus 269 ~~~~~~m-~~~p-------------~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 331 (475)
..+++.+ ...| + ...+..+...+...|+.++|+++++++....|.++..+..++.++...|++
T Consensus 330 ~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~ 409 (765)
T PRK10049 330 LTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWP 409 (765)
T ss_pred HHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH
Confidence 9999988 2222 2 234556777889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhCC
Q 038542 332 EKKTKIREVMDKRG 345 (475)
Q Consensus 332 ~~a~~~~~~m~~~~ 345 (475)
++|.+.+++..+..
T Consensus 410 ~~A~~~l~~al~l~ 423 (765)
T PRK10049 410 RAAENELKKAEVLE 423 (765)
T ss_pred HHHHHHHHHHHhhC
Confidence 99999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.4e-13 Score=140.66 Aligned_cols=316 Identities=11% Similarity=0.018 Sum_probs=222.6
Q ss_pred HHcCCCcHHHHHHHHHHHHh-c-CCCChhHHHHHHHHHHhCCCC---HHHHHHH------------Hh------------
Q 038542 20 CAGIGDLNLGKSVHGAVLKF-Q-FGDDIHVQNTLVHMYGSCEGG---IELGRKV------------FD------------ 70 (475)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~-g-~~~~~~~~~~li~~~~~~gg~---~~~A~~~------------f~------------ 70 (475)
....|+.++|.+++...... + -..+....+-|+..|.+.+ . ..++..+ ..
T Consensus 386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (987)
T PRK09782 386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP-YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAI 464 (987)
T ss_pred HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC-cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHH
Confidence 34567788888888777652 1 1224445557777777765 4 2233222 11
Q ss_pred -ccCC---C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 038542 71 -EMSE---R--DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144 (475)
Q Consensus 71 -~~~~---~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 144 (475)
.... + +...|..+..++.. +++++|+..+.+.... .|+......+..++...|++++|...++.+... +
T Consensus 465 ~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~ 539 (987)
T PRK09782 465 VRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--D 539 (987)
T ss_pred HHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--C
Confidence 1111 2 55677777777776 7888888877777664 466555444455556888888888888887554 3
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038542 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWT---SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221 (475)
Q Consensus 145 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 221 (475)
|+...+..+...+.+.|+.++|...|++..+.+...++ .+.......|++++|+..+++..+. .|+...+..+..
T Consensus 540 p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~ 617 (987)
T PRK09782 540 MSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT 617 (987)
T ss_pred CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence 44445666777888888888888888877654332222 2233334458888888888888874 567778888888
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 299 (475)
++.+.|+.++|...++.... --+.+...+..+...+...|++++|...+++. ...| +...+..+..++...|++++
T Consensus 618 ~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~e 695 (987)
T PRK09782 618 IYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAA 695 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 88888888888888888876 33445667777788888888888888888877 4445 57778888888888888888
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 300 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
|...++++++..|.+..+.........+..+++.+.+.+++--..+
T Consensus 696 A~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~ 741 (987)
T PRK09782 696 TQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS 741 (987)
T ss_pred HHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence 8888888888888888888888888888888888888776655443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.9e-12 Score=129.68 Aligned_cols=325 Identities=11% Similarity=0.032 Sum_probs=233.0
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC--ChhHHHHHHHHHHHcCChh
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER--DSVSWSAMIGGYARLGLST 94 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~--~~~~~~~li~~~~~~g~~~ 94 (475)
...+...|+++.|.++++.+.+.. +.+..++..++..|...+ +.++|++.++++... +...+-.++..+...++..
T Consensus 109 A~ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~ 186 (822)
T PRK14574 109 ARAYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAG-RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNY 186 (822)
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcC-CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHH
Confidence 346677799999999999998875 455667777788888888 999999999888764 3334433333333355665
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH--------------------------------------
Q 038542 95 DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES-------------------------------------- 136 (475)
Q Consensus 95 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~-------------------------------------- 136 (475)
+|++.++++.+.. +-+...+..+..+..+.|....|.++..
T Consensus 187 ~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~ 265 (822)
T PRK14574 187 DALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFD 265 (822)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence 6899999988763 2245455555555555554433332222
Q ss_pred ----------HHHHc-CCCCC-ccH-HHHH---HHHHHhcCCHHHHHHHHHhcCCCC--h--hHHHHHHHHHHHcCChHH
Q 038542 137 ----------FIEKQ-MVNRS-VGL-CNAL---IDMFAKCGDVDKALKLFRSMNGRT--I--VSWTSVIAGLAMHGRGLE 196 (475)
Q Consensus 137 ----------~~~~~-~~~~~-~~~-~~~l---i~~y~~~g~~~~A~~~~~~~~~~~--~--~~~~~li~~~~~~g~~~~ 196 (475)
.+... +-.|. ... ..+. +-++.+.|+..++++.|+.++... + .+--++.++|...+++++
T Consensus 266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k 345 (822)
T PRK14574 266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK 345 (822)
T ss_pred HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence 11111 11121 111 1222 345667788999999999988442 2 344567889999999999
Q ss_pred HHHHHHHHHHcC-----CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC----------CCCCh---hHHHHHHHH
Q 038542 197 AVALFEEMLEAG-----VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG----------IIPKI---EHYGCMVDM 258 (475)
Q Consensus 197 A~~l~~~m~~~g-----~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~----------~~p~~---~~~~~li~~ 258 (475)
|+.+|+.+.... ..++......|..++..++++++|..+++.+.+..- -.|+. ..+..++..
T Consensus 346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~ 425 (822)
T PRK14574 346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS 425 (822)
T ss_pred HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence 999999986643 123344457889999999999999999999987311 01222 334556778
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
+...|++.+|++.++++ ...| |...+..+...+...|.+.+|++.++.+...+|++..+...++.++...|+|++|.+
T Consensus 426 ~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~ 505 (822)
T PRK14574 426 LVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMEL 505 (822)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHH
Confidence 88999999999999998 3344 888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhC
Q 038542 337 IREVMDKR 344 (475)
Q Consensus 337 ~~~~m~~~ 344 (475)
+.+.+.+.
T Consensus 506 ~~~~l~~~ 513 (822)
T PRK14574 506 LTDDVISR 513 (822)
T ss_pred HHHHHHhh
Confidence 98777653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.2e-12 Score=131.64 Aligned_cols=318 Identities=14% Similarity=0.056 Sum_probs=207.4
Q ss_pred HHcCCCcHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHhCCCCHHHHHHHHhccCCCChh-HHHHH--HHHHHHcCChh
Q 038542 20 CAGIGDLNLGKSVHGAVLKFQFGDDI--HVQNTLVHMYGSCEGGIELGRKVFDEMSERDSV-SWSAM--IGGYARLGLST 94 (475)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~g~~~~~--~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~-~~~~l--i~~~~~~g~~~ 94 (475)
..+.|+++.|...+.++.+. .|+. .++ .++..++..| +.++|+..+++...|+.. .+..+ ...|...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~--~P~~~~av~-dll~l~~~~G-~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKA--GPLQSGQVD-DWLQIAGWAG-RDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhh--CccchhhHH-HHHHHHHHcC-CcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence 34566666777776666655 3332 233 5666666666 666666666666654222 22222 34555666666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038542 95 DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174 (475)
Q Consensus 95 ~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 174 (475)
+|+++|+++.+.. +-+...+..++..+...++.++|.+.+..+.+. .|+...+..++..+...++..+|++.++++.
T Consensus 120 ~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll 196 (822)
T PRK14574 120 QALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAV 196 (822)
T ss_pred HHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 6666666666542 223444445555566666666666666665554 2333333333333333444434555554432
Q ss_pred C--C-Ch--------------------------------------------------------------------hHHH-
Q 038542 175 G--R-TI--------------------------------------------------------------------VSWT- 182 (475)
Q Consensus 175 ~--~-~~--------------------------------------------------------------------~~~~- 182 (475)
+ | +. .-+.
T Consensus 197 ~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~ 276 (822)
T PRK14574 197 RLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN 276 (822)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence 1 0 00 0000
Q ss_pred --------------------HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 183 --------------------SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 183 --------------------~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
-.+-++...|+..++++.|+.+...|.+....+-..+.++|...+.+++|..++..+...
T Consensus 277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~ 356 (822)
T PRK14574 277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS 356 (822)
T ss_pred HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence 123345567888999999999998876545567788999999999999999999998764
Q ss_pred cC----CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC--------------CC--CH-HHHHHHHHHHHhcCCHHHHH
Q 038542 243 FG----IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI--------------EA--NP-IIWRTLISACCARGELKLAE 301 (475)
Q Consensus 243 ~~----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--------------~p--~~-~~~~~li~~~~~~g~~~~a~ 301 (475)
.+ ..++......|.-+|...+++++|..+++++.- .| |- .....++..+...|+..+|+
T Consensus 357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae 436 (822)
T PRK14574 357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ 436 (822)
T ss_pred cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence 22 233445567889999999999999999998811 12 21 23344567788899999999
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+.++++....|.|......+..++...|.+.+|.+.++.....
T Consensus 437 ~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l 479 (822)
T PRK14574 437 KKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESL 479 (822)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999766543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.3e-12 Score=131.22 Aligned_cols=313 Identities=11% Similarity=0.026 Sum_probs=232.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC-C-----ChhHHHHHHHHHHHcCC---hh
Q 038542 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-R-----DSVSWSAMIGGYARLGL---ST 94 (475)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~---~~ 94 (475)
+...++.+.+..+.+.. +-+....--+.-...+.| +.++|.++|..... + +...-+-++..|.+++. ..
T Consensus 356 ~~~~~~~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 433 (987)
T PRK09782 356 RNKAEALRLARLLYQQE-PANLTRLDQLTWQLMQNG-QSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA 433 (987)
T ss_pred CchhHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc-cHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence 55566666666666652 223333333444445667 99999999988765 2 23345577788888766 34
Q ss_pred HHHHH----------------------HHHHHHC-CC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCcc
Q 038542 95 DAIDL----------------------FRQMQIS-GV-CP--DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148 (475)
Q Consensus 95 ~A~~~----------------------~~~m~~~-g~-~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (475)
+++.+ +...... +. ++ +...|..+..++.. ++.++|...+....... |+..
T Consensus 434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~ 510 (987)
T PRK09782 434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAW 510 (987)
T ss_pred HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchH
Confidence 44333 1111111 12 23 45566666666655 88888999888777653 4544
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 226 (475)
....+...+...|++++|...|+++.. ++...+..+...+.+.|+.++|...+++..+.. +++...+..+.......
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~ 589 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIP 589 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhC
Confidence 444445556789999999999998753 344567777888999999999999999998864 33334444455566677
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038542 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESIT 304 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 304 (475)
|++++|...++...+ ..|+...|..+..++.+.|++++|...+++. ...| +...+..+..++...|+.++|+..+
T Consensus 590 Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l 666 (987)
T PRK09782 590 GQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREML 666 (987)
T ss_pred CCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999885 3567889999999999999999999999998 5566 5778888888999999999999999
Q ss_pred HHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 305 KRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 305 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+++++..|.++..+..+..+|...|++++|...+++..+..
T Consensus 667 ~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 667 ERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999987644
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.2e-15 Score=140.59 Aligned_cols=257 Identities=16% Similarity=0.118 Sum_probs=110.8
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH-HHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 82 AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT-VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
.+...+.+.|++++|++++.+......+|+...|.. +...+...++.+.|...++.+.+.+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 446677788888999888866544432455544444 444566788889999999988876543 56667777777 688
Q ss_pred CCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 038542 161 GDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACSHCGLVDKGREYFD 237 (475)
Q Consensus 161 g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 237 (475)
+++++|.+++...-+ ++...+..++..+.+.++++++..+++...... .+++...|..+...+.+.|+.++|...++
T Consensus 91 ~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~ 170 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR 170 (280)
T ss_dssp ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred ccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999988876643 456677788888999999999999999977543 34567778888888999999999999999
Q ss_pred HhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 238 SMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 238 ~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
...+. .+.+......++..+...|+.+++.+++... ....|+..|..+..++...|+.++|...+++..+..|.|+
T Consensus 171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccc
Confidence 98863 2335778888999999999999888777766 2234667888999999999999999999999999999999
Q ss_pred chHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 316 SNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
.....+..++...|+.++|.+++++..
T Consensus 249 ~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 249 LWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT----------------
T ss_pred ccccccccccccccccccccccccccc
Confidence 999999999999999999999987654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.2e-12 Score=125.07 Aligned_cols=328 Identities=14% Similarity=0.119 Sum_probs=254.8
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhcc---CCCChhHHHHHHHHHH
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM---SERDSVSWSAMIGGYA 88 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~---~~~~~~~~~~li~~~~ 88 (475)
..-.........|+++.|..++.++++.. +.....|-.|...|-..| +.+++...+--. ...|..-|..+.....
T Consensus 141 ~ll~eAN~lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrG-d~eK~l~~~llAAHL~p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 141 QLLGEANNLFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRG-DIEKALNFWLLAAHLNPKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcc-cHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 33333444444599999999999999986 667788999999999998 999998876443 3457889999999999
Q ss_pred HcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHH----HHHHHHhcCCHH
Q 038542 89 RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA----LIDMFAKCGDVD 164 (475)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~y~~~g~~~ 164 (475)
+.|++++|.-.|.+..+.. +++...+---...|-+.|+...|..-+.++.....+.|..-.-. .+..|...++-+
T Consensus 219 ~~~~i~qA~~cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred hcccHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 9999999999999999874 45655666677788999999999999999988754333333333 355677778888
Q ss_pred HHHHHHHhcCC--C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH-----------------------
Q 038542 165 KALKLFRSMNG--R---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF----------------------- 216 (475)
Q Consensus 165 ~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----------------------- 216 (475)
.|.+.++.... . +...++.++..|.+...++.|......+......+|..-+
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 89988887764 2 4467889999999999999999999888762222222111
Q ss_pred ---HHHHHHHhcCCCHHHHHHHHHHhhhhcC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHH
Q 038542 217 ---VGLLSACSHCGLVDKGREYFDSMKNDFG--IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLI 288 (475)
Q Consensus 217 ---~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li 288 (475)
..+.-++.+....+....+....... . ..-+...|.-+.++|...|++.+|.++|..+ +...+...|-.+.
T Consensus 378 l~v~rl~icL~~L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVIRLMICLVHLKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhHhHhhhhhcccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 11222334444444444455555543 5 3345678899999999999999999999998 2223678999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..|...|.+++|.+.+++++...|++..+-..|...|-+.|+.++|.+++..+..
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~ 511 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIIN 511 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999999988763
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-12 Score=121.00 Aligned_cols=274 Identities=11% Similarity=0.101 Sum_probs=209.7
Q ss_pred CCHHHHHHHHhccCCC--C-hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHhccCChHHHHHH
Q 038542 60 GGIELGRKVFDEMSER--D-SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV--TVLSACTDLGALEVGKWV 134 (475)
Q Consensus 60 g~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~--~ll~~~~~~~~~~~a~~~ 134 (475)
|+++.|++.+...++. + ...|-....+..+.|+++.|.+.+.++.+. .|+..... .....+...|+++.|...
T Consensus 98 Gd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~ 175 (398)
T PRK10747 98 GDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHG 175 (398)
T ss_pred CCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4999999999887653 2 333433345558899999999999999874 56654433 335568889999999999
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHH
Q 038542 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI-----------VSWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
++.+.+.. +.++.+...+...|.+.|++++|.+++..+.+... .+|..++.......+.+...++++.
T Consensus 176 l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 176 VDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 99999876 44778889999999999999999999998875321 1344444444445555666666666
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CH
Q 038542 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NP 281 (475)
Q Consensus 204 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~ 281 (475)
.-.. .+.+......+..++...|+.++|..+++...+. .|+... .++.+....++.+++.+.+++. ...| |+
T Consensus 255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~~~ 328 (398)
T PRK10747 255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGDTP 328 (398)
T ss_pred CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCCCH
Confidence 5332 3557778888999999999999999999888763 444422 2233334569999999999887 4455 56
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+.++...|...+++++|.+.|+++.+..|++ ..+..|..++.+.|+.++|.+.+++-..
T Consensus 329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 329 LLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 678889999999999999999999999999975 5678999999999999999999986543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.7e-11 Score=109.90 Aligned_cols=329 Identities=15% Similarity=0.159 Sum_probs=238.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC-CC-H------------------------HH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE-GG-I------------------------EL 64 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g-g~-~------------------------~~ 64 (475)
.|=+.+++. ...|.+..+--+++.|...|.+.+..+...|+..-+-.+ .+ . +-
T Consensus 117 ~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 355666654 456889999999999999998888877777665432211 01 1 11
Q ss_pred HHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC
Q 038542 65 GRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN 144 (475)
Q Consensus 65 A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 144 (475)
|.-+|+.. .+...||.+||.++++--..+.|.+++++-.....+.+..+|+.++.+.+-. .++.+..+|+...+.
T Consensus 196 AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~ 270 (625)
T KOG4422|consen 196 ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMT 270 (625)
T ss_pred HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcC
Confidence 22233332 2367899999999999999999999999999888899999999999886543 348889999999999
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHH----HhcC----CCChhHHHHHHHHHHHcCChHH-HHHHHHHHHHc----CCC-
Q 038542 145 RSVGLCNALIDMFAKCGDVDKALKLF----RSMN----GRTIVSWTSVIAGLAMHGRGLE-AVALFEEMLEA----GVP- 210 (475)
Q Consensus 145 ~~~~~~~~li~~y~~~g~~~~A~~~~----~~~~----~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~----g~~- 210 (475)
||..++|+++.+.++.|+++.|.+.+ .+|+ +|...+|..+|..+++.++..+ |..++.+++.. .++
T Consensus 271 Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp 350 (625)
T KOG4422|consen 271 PNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKP 350 (625)
T ss_pred CchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccC
Confidence 99999999999999999988776554 4554 5778899999999999988755 55555555432 222
Q ss_pred --C-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC---CCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC---CCC
Q 038542 211 --P-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG---IIPK---IEHYGCMVDMLCRSGRVKEAHEFIQKM---PIE 278 (475)
Q Consensus 211 --p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~---~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~ 278 (475)
| |...|...+..|.+..+.+.|.++..-+...-+ +.|+ ..-|..+..+.++....+.-.+.|+.| -.-
T Consensus 351 ~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 351 ITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred CCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 3 455678889999999999999998877664211 2233 234667888889999999999999998 344
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh---------------------CCCCCC----------------------
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIG---------------------NEPMHE---------------------- 315 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~---------------------~~p~~~---------------------- 315 (475)
|+..+...++++....+.++-.-+++..+.+ ..|..+
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 6777777777777777766655554444331 123221
Q ss_pred ------------chHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 316 ------------SNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 316 ------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
......+-.+.+.|+.++|.+++..+.+++
T Consensus 511 ~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~ 552 (625)
T KOG4422|consen 511 QPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKH 552 (625)
T ss_pred hHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcC
Confidence 123344556678999999999999987655
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-11 Score=116.32 Aligned_cols=279 Identities=9% Similarity=-0.045 Sum_probs=216.7
Q ss_pred CCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHH-HhCCCCHHHHHHHHhccCCC--ChhHHH--HHHHHHHHcCChhHHH
Q 038542 23 IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMY-GSCEGGIELGRKVFDEMSER--DSVSWS--AMIGGYARLGLSTDAI 97 (475)
Q Consensus 23 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~-~~~gg~~~~A~~~f~~~~~~--~~~~~~--~li~~~~~~g~~~~A~ 97 (475)
.|+++.|++......+. .++...+-.+..-. .+.| +++.|.+.|.++.+. +..... .....+...|++++|.
T Consensus 97 eGd~~~A~k~l~~~~~~--~~~p~l~~llaA~aA~~~g-~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADH--AEQPVVNYLLAAEAAQQRG-DEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhc--ccchHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 59999999877765554 22333333333334 5556 999999999998763 332222 3367889999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-------cHHHHHHHHHHhcCCHHHHHHHH
Q 038542 98 DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV-------GLCNALIDMFAKCGDVDKALKLF 170 (475)
Q Consensus 98 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~ 170 (475)
..++++.+.. +-+...+..+...+.+.|+++.+..++..+.+.+..++. .+|..++.......+.+...+++
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w 252 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW 252 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999998864 335677888889999999999999999999988755322 13334454455556677788888
Q ss_pred HhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC
Q 038542 171 RSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247 (475)
Q Consensus 171 ~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p 247 (475)
+..+. .++.....+..++...|+.++|.+++++..+. +||... .++.+....++.+++.+..+...+ ..+-
T Consensus 253 ~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~ 326 (398)
T PRK10747 253 KNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGD 326 (398)
T ss_pred HhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCC
Confidence 88763 47788889999999999999999999999883 556532 234445566999999999999987 4455
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
|+..+.++...+.+.|++++|.+.|+.. ...|+...+..+...+...|+.++|.+++++.+.+-
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 6677889999999999999999999998 778999999999999999999999999999987653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.7e-11 Score=115.96 Aligned_cols=275 Identities=9% Similarity=0.025 Sum_probs=177.3
Q ss_pred CHHHHHHHHhccCCC--C-hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHHHHHH
Q 038542 61 GIELGRKVFDEMSER--D-SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI--TMVTVLSACTDLGALEVGKWVE 135 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~--~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~~~~a~~~~ 135 (475)
+++.|++.+.+..+. + ...+-....++.+.|+++.|.+.+.+..+. .|+.. .-......+...|+++.|...+
T Consensus 99 ~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l 176 (409)
T TIGR00540 99 DYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGV 176 (409)
T ss_pred CHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888888888776542 2 333444456677778888888888887654 34432 3333466677788888888888
Q ss_pred HHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHH----HHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWT----SVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 136 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
+.+.+.. +.+..+...+..+|.+.|++++|.+.+....+. +...+. ....+....+..+++.+.+..+.+..
T Consensus 177 ~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~ 255 (409)
T TIGR00540 177 DKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ 255 (409)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence 8888775 335667778888888888888888888777643 222221 11112233333344444555555432
Q ss_pred C---CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH-HHHHHHH--HHcCCHHHHHHHHHhC-CCCC-C
Q 038542 209 V---PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY-GCMVDML--CRSGRVKEAHEFIQKM-PIEA-N 280 (475)
Q Consensus 209 ~---~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~--~~~g~~~~A~~~~~~m-~~~p-~ 280 (475)
. +.+...+..+...+...|+.++|.++++...+. .|+.... ..++..+ ...++.+.+.+.+++. ...| |
T Consensus 256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~ 332 (409)
T TIGR00540 256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK 332 (409)
T ss_pred CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC
Confidence 1 136677777788888888888888888887763 2332210 0122222 3346677777777665 3334 3
Q ss_pred H--HHHHHHHHHHHhcCCHHHHHHHHH--HHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 281 P--IIWRTLISACCARGELKLAESITK--RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 281 ~--~~~~~li~~~~~~g~~~~a~~~~~--~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+ ....++...+.+.|++++|.+.|+ ...+..|++ ..+..+..++.+.|+.++|.+++++-.
T Consensus 333 ~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 333 PKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-NDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3 566678888888888888888888 455666754 446688888888888888888887653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.9e-10 Score=104.47 Aligned_cols=334 Identities=10% Similarity=0.093 Sum_probs=240.3
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC----CCChhHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS----ERDSVSWSAM 83 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~----~~~~~~~~~l 83 (475)
-+..||..++.+.++--..+.|.+++.+......+.+..++|.+|.+-+-.. + .++..+|. .||..|+|++
T Consensus 205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~-~----K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV-G----KKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc-c----HHHHHHHHHhhcCCchHhHHHH
Confidence 3567999999999999999999999998887777889999999998765444 3 45555554 5899999999
Q ss_pred HHHHHHcCChhH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHH----cCCCC----CccHH
Q 038542 84 IGGYARLGLSTD----AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEV-GKWVESFIEK----QMVNR----SVGLC 150 (475)
Q Consensus 84 i~~~~~~g~~~~----A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~----~~~~~----~~~~~ 150 (475)
+++.++.|+++. |++++.+|++.|+.|...+|..++..+.+.++..+ +..+...+.. ..++| +...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998764 57788899999999999999999998888777643 4444444432 12322 34455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC--------C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGR--------T---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~--------~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 219 (475)
..-++.|.+..+.+-|.++-.-.... + ..-|..+....++....+.-+..|+.|.-.-.-|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 66677788888888888876655422 1 133556777788888899999999999887778999999999
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC-C--------HHH-----HHHHHH-------hC-CC
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG-R--------VKE-----AHEFIQ-------KM-PI 277 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~--------~~~-----A~~~~~-------~m-~~ 277 (475)
++|..-.+.++-.-++|..++. +|..-+...-.-+...+++.. . +.. |..+++ ++ ..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~ 518 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ 518 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc
Confidence 9999999999998888888887 464444444444444444443 1 111 111111 11 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCCc--hHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 278 EANPIIWRTLISACCARGELKLAESITKRLIGNE---PMHES--NYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---p~~~~--~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
.-.....+.+...+.+.|..++|.+++..+.+.+ |..+. +..-|.+.-....+...|..+++.|...+..
T Consensus 519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~ 593 (625)
T KOG4422|consen 519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLP 593 (625)
T ss_pred cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCch
Confidence 3345566777777899999999999999986544 44332 2334555556677899999999999776654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.6e-12 Score=119.63 Aligned_cols=274 Identities=17% Similarity=0.066 Sum_probs=212.6
Q ss_pred CHHHHHHHHhccCC--CCh-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHhccCChHHHHHHH
Q 038542 61 GIELGRKVFDEMSE--RDS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGV--CPDEITMVTVLSACTDLGALEVGKWVE 135 (475)
Q Consensus 61 ~~~~A~~~f~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~~~t~~~ll~~~~~~~~~~~a~~~~ 135 (475)
+.++|...|..+++ +|+ .....+..+|...+++++|.++|+.+.+... .-+...|+++|--+-+.- +...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v----~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV----ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH----HHHHH
Confidence 57789999998765 243 3445678899999999999999999987521 125667888776543321 12222
Q ss_pred -HHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 136 -SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 136 -~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
+.+++. -+..+.+|.++.++|.-.++.+.|++.|++..+-| ..+|+.+..-+.....+|.|...|+.... +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 223333 24578899999999999999999999999987654 46777777778888999999999998865 333
Q ss_pred CH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 038542 212 DD-VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTL 287 (475)
Q Consensus 212 ~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 287 (475)
.. ..|..+...|.+.++++.|+-.|+...+ +.| +.....++...+-+.|+.++|+++++++ -..| |+..--.-
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 32 3566678899999999999999998874 444 5566777888899999999999999998 3333 44444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+..+...+++++|.+.++++.+.-|++...|..+...|-+.|+.+.|..-|.-+.+.
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 566778899999999999999999999999999999999999999999888666543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.50 E-value=7.2e-14 Score=128.85 Aligned_cols=252 Identities=16% Similarity=0.189 Sum_probs=88.2
Q ss_pred HHHHHHHhCCCCHHHHHHHHhcc-CC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEM-SE----RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~-~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (475)
.+..++.+.| +++.|+++++.. .. .|..-|..+.......+++++|++.++++...+.. +...+..++.. ..
T Consensus 13 ~~A~~~~~~~-~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRG-DYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cc
Confidence 3455555555 666666666332 11 13444555555555566666666666666654321 33344444444 46
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChhHHHHHHHHHHHcCChHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-----GRTIVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~g~~~~A~~ 199 (475)
.+++++|..+.....+.. ++...+..++..|.+.|+++++.++++... ..+...|..+...+.+.|+.++|++
T Consensus 90 ~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred cccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666665544332 344455566666667777777777666643 2355666677777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE 278 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~ 278 (475)
.+++..+.. +.|......++..+...|+.+++..++....+. .+.++..+..+..+|...|+.++|...|++. ...
T Consensus 168 ~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 777777752 224556667777777777777777777777663 2455566777777777888888888877776 323
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 279 A-NPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 279 p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
| |+.+...+..++...|+.++|.++.+++.+
T Consensus 245 p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TT-HHHHHHHHHHHT-----------------
T ss_pred cccccccccccccccccccccccccccccccc
Confidence 4 666667777777888888888777776543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.2e-10 Score=105.16 Aligned_cols=254 Identities=13% Similarity=0.077 Sum_probs=191.3
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC--CCccHHHHHHHHHHhcC
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVN--RSVGLCNALIDMFAKCG 161 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~y~~~g 161 (475)
..++....+.++++.-.......|.+-+...-+....+.-...++++|+.+|+.+.+...- .|..+|+.++ |.+..
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh
Confidence 3455555567777777777777665444443333444455677888888888888876311 1445555544 33332
Q ss_pred C--HHH-HHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038542 162 D--VDK-ALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238 (475)
Q Consensus 162 ~--~~~-A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 238 (475)
+ +.- |..+++ +.+--+.|...+.+-|.-.++.++|...|++..+.+ +-....|+.+..-|....+...|.+-++.
T Consensus 312 ~skLs~LA~~v~~-idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred hHHHHHHHHHHHH-hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 2 111 222221 112234556667777888899999999999999864 33456788888899999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
..+ -.+-|-..|-.|.++|.-.+...-|+-.|++. ..+| |...|.+|...|.+.++.++|++.|.++...+..+..
T Consensus 390 Avd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~ 467 (559)
T KOG1155|consen 390 AVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGS 467 (559)
T ss_pred HHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchH
Confidence 886 44557789999999999999999999999998 6677 8999999999999999999999999999999877788
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+..|...|-+.++.++|.+.+++-.+
T Consensus 468 ~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 468 ALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999987765
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.1e-11 Score=114.72 Aligned_cols=281 Identities=11% Similarity=-0.018 Sum_probs=144.8
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCChhHH-HHHHHHHHhCCCCHHHHHHHHhccCC--CC--hhHHHHHHHHHHHcCChhHH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGDDIHVQ-NTLVHMYGSCEGGIELGRKVFDEMSE--RD--SVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~li~~~~~~gg~~~~A~~~f~~~~~--~~--~~~~~~li~~~~~~g~~~~A 96 (475)
..|+++.|++.+....+. .|+...+ -.....+.+.| +.+.|.+.|.+..+ |+ ....-.....+.+.|++++|
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g-~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRG-DEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 346666666666655544 2332222 22233344445 66666666666422 22 22233345556666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHH---H----hcCCHHHHHHH
Q 038542 97 IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF---A----KCGDVDKALKL 169 (475)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y---~----~~g~~~~A~~~ 169 (475)
...++.+.+.. +-+...+..+...+...|+++.+.+.+..+.+.+..+.......-..++ . .....+...+.
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~ 251 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNW 251 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 66666666643 2244455566666666666666666666666665332221111111111 1 11222333444
Q ss_pred HHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 038542 170 FRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA---FVGLLSACSHCGLVDKGREYFDSMKNDF 243 (475)
Q Consensus 170 ~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 243 (475)
++..+. .+...+..+...+...|+.++|.+++++..+. .||... ...........++.+.+.+.++...+..
T Consensus 252 ~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~ 329 (409)
T TIGR00540 252 WKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNV 329 (409)
T ss_pred HHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhC
Confidence 444442 25566666666666666666666666666664 233321 0111112233455666666666555431
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK--M-PIEANPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~--m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
.-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++..
T Consensus 330 p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 330 DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 2222113444566666666666666666663 2 445666666666666666666666666666653
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.2e-11 Score=118.34 Aligned_cols=279 Identities=11% Similarity=0.011 Sum_probs=219.4
Q ss_pred CcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC------CChhHHHHHHHHHHHcCChhHHHH
Q 038542 25 DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE------RDSVSWSAMIGGYARLGLSTDAID 98 (475)
Q Consensus 25 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 98 (475)
+..+|...|..+... +..+..+...+..+|...+ ++++|+++|+.+.+ .+...|.+.+--+-+ +-++.
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~-~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELI-EYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHH
Confidence 467788888884443 3444577788999999999 99999999999875 267788877654432 22333
Q ss_pred HHH-HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 038542 99 LFR-QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177 (475)
Q Consensus 99 ~~~-~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 177 (475)
.+. .+... -+-.+.||-.+.+.|+-+++.+.|.+.|++.++... ...++|+.+..-+.....+|+|...|+.....|
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp-~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDP-RFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCC-ccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 332 22222 234578999999999999999999999999988632 277889988888899999999999999988777
Q ss_pred hhHHH---HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH
Q 038542 178 IVSWT---SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254 (475)
Q Consensus 178 ~~~~~---~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 254 (475)
...|| -+...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.|+|++++++... --+.|+..---
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHH
Confidence 75555 46778999999999999999998854 44566677778888899999999999999885 22334555555
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
.+..+...+++++|+..++++ .+.| +..++..+...|.+.|+.+.|..-|..+.+++|.-
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 677888899999999999999 4556 56778888899999999999999999999999864
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.2e-10 Score=104.69 Aligned_cols=172 Identities=16% Similarity=0.170 Sum_probs=124.6
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 232 (475)
.+-+.|++++|++.|-++. ..++...-.+.+.|-...+..+|++++.+.... ++.|+.....|...|-+.|+-.+|
T Consensus 533 t~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 533 TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhh
Confidence 3445556666666555443 234444445556666666666677666655443 455666777777888888888888
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhC
Q 038542 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACC-ARGELKLAESITKRLIGN 310 (475)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~~~~~ 310 (475)
.+.+-.--+ -++.+.++..-|..-|....-+++|...|++. -++|+..-|..++.+|. +.|+++.|..+++...+.
T Consensus 612 fq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 612 FQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 776654332 34557777777777777887888999999888 57899999999988775 589999999999999999
Q ss_pred CCCCCchHHHHHHHHHhccC
Q 038542 311 EPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 311 ~p~~~~~~~~l~~~~~~~g~ 330 (475)
.|.+......|.+.+...|.
T Consensus 690 fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccchHHHHHHHHHhccccc
Confidence 99999988899998887774
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-12 Score=124.43 Aligned_cols=268 Identities=14% Similarity=0.202 Sum_probs=197.5
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC
Q 038542 98 DLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT 177 (475)
Q Consensus 98 ~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~ 177 (475)
.++..+...|+.|+.+||.+++.-|+..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. .|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46678888999999999999999999999999999 9999998888889999999999999999988776 678
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
..+|..|..+|..+|+... |+...+ -...+...++..|.-..-..++..+.-..+.-||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~----fe~veq--------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL----FEVVEQ--------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH----HHHHHH--------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8999999999999999876 333332 223345566666666666666665443335556654 3556
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG-ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
...-.|.++.+.+++..+|...-......+++-+.... .+++-..+.+...+ .| ++.+|..++..-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e-~~-~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE-AP-TSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc-CC-ChHHHHHHHHHHHhcCchhhHHH
Confidence 66777889999999988864431112222355554433 33443444444444 34 67899999999999999999999
Q ss_pred HHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCCccccccCC
Q 038542 337 IREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTTSEVLLDIN 405 (475)
Q Consensus 337 ~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~~~~~~~~~ 405 (475)
++..|+++|+...+...|..+ +|.. ....++.++.-|++.|+.|+..|....+.
T Consensus 226 ll~emke~gfpir~HyFwpLl--------~g~~-------~~q~~e~vlrgmqe~gv~p~seT~adyvi 279 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLL--------LGIN-------AAQVFEFVLRGMQEKGVQPGSETQADYVI 279 (1088)
T ss_pred HHHHHHHcCCCcccccchhhh--------hcCc-------cchHHHHHHHHHHHhcCCCCcchhHHHHH
Confidence 999999999999999888854 3311 22345556667999999999988665443
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-11 Score=106.59 Aligned_cols=197 Identities=13% Similarity=0.088 Sum_probs=161.8
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 222 (475)
....+..+...|...|++++|...|++..+ .+...+..+...|...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 345677788889999999999999987653 356778888889999999999999999988764 4456677788888
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 300 (475)
+...|++++|...++..............+..+...+...|++++|.+.+++. ...| +...|..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863222334556777888899999999999999887 3334 567788889999999999999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
...+++..+..|.++..+..++..+...|++++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999888887778888889999999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.7e-09 Score=103.30 Aligned_cols=337 Identities=10% Similarity=0.065 Sum_probs=197.5
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGY 87 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~ 87 (475)
.||......|.+.+.++-|+.+|...++- ++.+..+|......--..| ..+.-..+|++... +..+.|-....-+
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hg-t~Esl~Allqkav~~~pkae~lwlM~ake~ 594 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHG-TRESLEALLQKAVEQCPKAEILWLMYAKEK 594 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcC-cHHHHHHHHHHHHHhCCcchhHHHHHHHHH
Confidence 47777788888888888888888887765 3455555555544433333 55555555555432 1333444444444
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH------------------------------
Q 038542 88 ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESF------------------------------ 137 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~------------------------------ 137 (475)
-..|+...|..++....+.. +-+...|...+..-.....++.|..++.+
T Consensus 595 w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rl 673 (913)
T KOG0495|consen 595 WKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRL 673 (913)
T ss_pred HhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHH
Confidence 44455555555555444432 11333444444444444455555555444
Q ss_pred ---HHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 138 ---IEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 138 ---~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.++. ++.-.-.|-.+...+-+.++++.|...|..-.. | .+..|-.+...--+.|..-.|..+|++.+..+ +-
T Consensus 674 lEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk 751 (913)
T KOG0495|consen 674 LEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PK 751 (913)
T ss_pred HHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CC
Confidence 4443 222233444444444444455555444443322 1 33445555554455555555555555555443 33
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~ 291 (475)
|...|...++.-.+.|+.+.|..+..+... ..+.+...|..-|-+..+.++-..+.+.+++. +.|+.+..++...+
T Consensus 752 ~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkc--e~dphVllaia~lf 827 (913)
T KOG0495|consen 752 NALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC--EHDPHVLLAIAKLF 827 (913)
T ss_pred cchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhc--cCCchhHHHHHHHH
Confidence 445555555555555666655555555554 34444455555555555555544444444443 33555666677778
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEEC
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~ 358 (475)
....+++.|.+.|.+....+|++..+|..+...+...|.-++-.+++....... |..|..|..+.
T Consensus 828 w~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~E--P~hG~~W~avS 892 (913)
T KOG0495|consen 828 WSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAE--PTHGELWQAVS 892 (913)
T ss_pred HHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCCCcHHHHHh
Confidence 888899999999999999999999999999999999999999999998876643 55566666443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.7e-10 Score=103.69 Aligned_cols=282 Identities=13% Similarity=0.110 Sum_probs=209.3
Q ss_pred HHHHHHhCCCCHHHHHHHHhccCC---C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhc
Q 038542 51 LVHMYGSCEGGIELGRKVFDEMSE---R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC--PDEITMVTVLSACTD 124 (475)
Q Consensus 51 li~~~~~~gg~~~~A~~~f~~~~~---~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p~~~t~~~ll~~~~~ 124 (475)
+..+|-... +.+++..-.+.... | +...-+....+.-.+.++++|+.+|+++.+...- -|..+|+.++-.-..
T Consensus 233 ~~~a~~el~-q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~ 311 (559)
T KOG1155|consen 233 LKKAYQELH-QHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKND 311 (559)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhh
Confidence 444555555 66666655555443 2 2222233334455678999999999999886321 256788887765333
Q ss_pred cCChH-HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHH
Q 038542 125 LGALE-VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVAL 200 (475)
Q Consensus 125 ~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l 200 (475)
...+. .|..++. + -+--+.|+..+.+-|+-.++.++|...|++..+- -...|+.|..-|...++...|++-
T Consensus 312 ~skLs~LA~~v~~-i----dKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 312 KSKLSYLAQNVSN-I----DKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hHHHHHHHHHHHH-h----ccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHH
Confidence 22221 1221111 1 1234567888899999999999999999987654 457899999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCC
Q 038542 201 FEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIE 278 (475)
Q Consensus 201 ~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~ 278 (475)
++...+-. +-|-..|-.|.++|.-.+.+.-|+-+|++... -.+.|...|.+|.++|.+.+++++|.+.|.+. .-.
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence 99999864 56778999999999999999999999999875 44557899999999999999999999999998 222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-------CCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIG-------NEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
.+...+..|...+-+.++.++|.+.+++-++ .+|....+...|..-+.+.++|++|.......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 3557888999999999999999999998765 23434445566888889999999998766443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2.5e-09 Score=102.19 Aligned_cols=323 Identities=15% Similarity=0.133 Sum_probs=269.9
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChh
Q 038542 18 KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLST 94 (475)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~ 94 (475)
++.....+.+.|+-++..+++. .+.+...|.+ |++.. .++.|.++++...+ .+...|.+-...=-.+|+.+
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~dLwlA----larLe-tYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSMDLWLA----LARLE-TYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHH-HHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHH
Confidence 3445567777799999998887 3555555554 45556 88889999887765 48889988888888899999
Q ss_pred HHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCCHHHHHH
Q 038542 95 DAIDLFRQM----QISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS--VGLCNALIDMFAKCGDVDKALK 168 (475)
Q Consensus 95 ~A~~~~~~m----~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~ 168 (475)
...+++.+- ...|+..+...|..=..+|-..|..-.+..|....+..|+... -.+|+.-...+.+.+.++-|+.
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carA 537 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARA 537 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHH
Confidence 888887654 5578999999999999999999999999999999998887643 4577778889999999999999
Q ss_pred HHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC
Q 038542 169 LFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI 245 (475)
Q Consensus 169 ~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~ 245 (475)
+|....+ .+...|...+..--.+|..++-..+|++.... ++-....+......+-..|++..|..++...... .
T Consensus 538 Vya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~--~ 614 (913)
T KOG0495|consen 538 VYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--N 614 (913)
T ss_pred HHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--C
Confidence 9987764 35678988888888899999999999999886 4455566666677778889999999999998873 3
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
+-+...|-+-+........+++|..+|.+. ...|+..+|..-+......++.++|.+++++.++..|+-...|..+..+
T Consensus 615 pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi 694 (913)
T KOG0495|consen 615 PNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQI 694 (913)
T ss_pred CCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHH
Confidence 346788999999999999999999999998 6778999999988888999999999999999999999999999999999
Q ss_pred HHhccChhHHHHHHHHHHhCCCccCCCcc
Q 038542 325 YAKLLRWEKKTKIREVMDKRGMKKIPGST 353 (475)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 353 (475)
+-+.++.+.|.+.+ ..|+++.|.+.
T Consensus 695 ~e~~~~ie~aR~aY----~~G~k~cP~~i 719 (913)
T KOG0495|consen 695 EEQMENIEMAREAY----LQGTKKCPNSI 719 (913)
T ss_pred HHHHHHHHHHHHHH----HhccccCCCCc
Confidence 99999999999988 67888887754
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-10 Score=99.17 Aligned_cols=284 Identities=13% Similarity=0.094 Sum_probs=214.6
Q ss_pred CHHHHHHHHhccCCCChh---HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH------HHHHHHHHHHhccCChHHH
Q 038542 61 GIELGRKVFDEMSERDSV---SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE------ITMVTVLSACTDLGALEVG 131 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~ll~~~~~~~~~~~a 131 (475)
+.++|.++|-+|.+-|.. +.-+|.+.|.+.|..+.|+++.+.+.++ ||. .....+..-|...|-++.|
T Consensus 50 Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 50 QPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred CcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 899999999999876554 4557889999999999999999998874 442 2333455668899999999
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh--------HHHHHHHHHHHcCChHHHHHHHHH
Q 038542 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV--------SWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~--------~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
+.+|..+.+.+ ..-......|+..|-+..+|++|+++-+++.+-+.. -|--+...+....+.+.|..++.+
T Consensus 127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 99999998754 224456778999999999999999998877644332 344455566667899999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHH
Q 038542 204 MLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPI 282 (475)
Q Consensus 204 m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~ 282 (475)
..+.+ +.....-..+.+.....|+++.|.+.++.+.+. +..--..+...|..+|...|+.++...++.++ ...+...
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 98864 223334445677888999999999999999885 55555678888999999999999999999887 4445555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH-H--hccChhHHHHHHHHHHhCCCccCCC
Q 038542 283 IWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY-A--KLLRWEKKTKIREVMDKRGMKKIPG 351 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~--~~g~~~~a~~~~~~m~~~~~~~~~~ 351 (475)
.-..+-..-....-.+.|...+.+-+...|.- ..+..|+..- . .-|++.+..-+++.|....++..|.
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~~ 354 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKPR 354 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcCC
Confidence 55556665566677788888888888888864 4455555543 2 3456888888899998776665554
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.9e-11 Score=116.20 Aligned_cols=250 Identities=18% Similarity=0.131 Sum_probs=168.8
Q ss_pred CccCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHH
Q 038542 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSW 80 (475)
Q Consensus 1 M~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~ 80 (475)
|+..|+.||.+||.+++..|+..|+.+.|- +|..|.-..++.+..+++.++.+..+.+ +.+.+. +|...||
T Consensus 16 ~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-------ep~aDty 86 (1088)
T KOG4318|consen 16 HEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-------EPLADTY 86 (1088)
T ss_pred HHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-------CCchhHH
Confidence 356799999999999999999999999998 9999998888999999999999998888 877665 7889999
Q ss_pred HHHHHHHHHcCChhHHHHHHHH-HHH-------CCCCCCHHHHHHHHHHHhccC-Ch------HHHHHHHHHHHHcCC-C
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQ-MQI-------SGVCPDEITMVTVLSACTDLG-AL------EVGKWVESFIEKQMV-N 144 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~-m~~-------~g~~p~~~t~~~ll~~~~~~~-~~------~~a~~~~~~~~~~~~-~ 144 (475)
..|..+|.+.|+... ++..++ |.. .|+..-..-+-..+..|-..- +. .--+.+++..++.+. .
T Consensus 87 t~Ll~ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~ 165 (1088)
T KOG4318|consen 87 TNLLKAYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV 165 (1088)
T ss_pred HHHHHHHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 999999999998765 222222 221 222111111111111111100 00 001122222222220 1
Q ss_pred CCccHHH-H--HHHHHHh-cCCHHHHHHHHHhcC-CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038542 145 RSVGLCN-A--LIDMFAK-CGDVDKALKLFRSMN-GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219 (475)
Q Consensus 145 ~~~~~~~-~--li~~y~~-~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 219 (475)
|...-++ . .++-... ...+++-...-.... .++..+|.+.+..-...|+.+.|..++.+|.+.|++.+..-|..|
T Consensus 166 Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpL 245 (1088)
T KOG4318|consen 166 PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPL 245 (1088)
T ss_pred CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhh
Confidence 1111011 0 1111111 122333333333333 378899999999999999999999999999999999999888888
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (475)
+-+ .++...+..++..|... |+.|+.+|+.-.+-.+...|.
T Consensus 246 l~g---~~~~q~~e~vlrgmqe~-gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 246 LLG---INAAQVFEFVLRGMQEK-GVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred hhc---CccchHHHHHHHHHHHh-cCCCCcchhHHHHHhhhcchh
Confidence 866 78888889999999885 999999999887776666554
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2e-09 Score=97.41 Aligned_cols=274 Identities=12% Similarity=0.101 Sum_probs=194.1
Q ss_pred CCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 038542 60 GGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136 (475)
Q Consensus 60 g~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 136 (475)
|++..|+++..+-.+ ..+..|..-..+--+.|+.+.+-.++.+.-+..-.++.....+........|+++.|..-..
T Consensus 98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~ 177 (400)
T COG3071 98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD 177 (400)
T ss_pred CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence 488888888877554 23445555566667778888888888887764223444455555566778888888888888
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-----------hHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038542 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI-----------VSWTSVIAGLAMHGRGLEAVALFEEML 205 (475)
Q Consensus 137 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-----------~~~~~li~~~~~~g~~~~A~~l~~~m~ 205 (475)
.+.+.+. -++.+......+|.+.|++.....++.++.+... .+|+.++.-....+..+.-...|+..-
T Consensus 178 ~ll~~~p-r~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p 256 (400)
T COG3071 178 QLLEMTP-RHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP 256 (400)
T ss_pred HHHHhCc-CChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence 8877753 3666777888888888888888888888875422 467777766665555555455555543
Q ss_pred HcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH
Q 038542 206 EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEANP 281 (475)
Q Consensus 206 ~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~ 281 (475)
.. .+-+...-.+++.-+...|+.++|.++..+..+. +..|+. +..-...+.++...-.+..+.- |. ++
T Consensus 257 r~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p 328 (400)
T COG3071 257 RK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE--DP 328 (400)
T ss_pred HH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC--Ch
Confidence 33 3445555667777788888888888888887775 666651 1112233445544444443333 44 44
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+.+|...|.+++.+.+|...|+..++..|. ...|..+..++.+.|+..+|.+++++-..
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 78899999999999999999999999998885 57899999999999999999999988764
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.5e-09 Score=94.64 Aligned_cols=279 Identities=11% Similarity=-0.030 Sum_probs=223.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC----ChhHHHHHHHHHHHcCChhHHHH
Q 038542 23 IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER----DSVSWSAMIGGYARLGLSTDAID 98 (475)
Q Consensus 23 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~----~~~~~~~li~~~~~~g~~~~A~~ 98 (475)
.|++.+|+.......+.+-.| ...|..-..+--+.| +.+.|-.++.+..++ +...+-+........|++..|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrg-d~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRG-DEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcc-cHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 589999999998877765322 233333444455667 999999999988764 45566777888999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-------cHHHHHHHHHHhcCCHHHHHHHHH
Q 038542 99 LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV-------GLCNALIDMFAKCGDVDKALKLFR 171 (475)
Q Consensus 99 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~y~~~g~~~~A~~~~~ 171 (475)
-.+++...+ +-+.........+|.+.|++.....+...+.+.|.-.+. .+|+.+++=....+..+.-...++
T Consensus 175 ~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 175 NVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 999998865 335677888999999999999999999999999876553 356667666666666666666787
Q ss_pred hcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC
Q 038542 172 SMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248 (475)
Q Consensus 172 ~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 248 (475)
..+. .++..-.+++.-+.+.|+.++|.++.++..+.+..|+. ..+-.+.+.++.+.-.+..+...+.++..|
T Consensus 254 ~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p- 328 (400)
T COG3071 254 NQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDP- 328 (400)
T ss_pred hccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCCh-
Confidence 7763 36777778888999999999999999999998777762 233456778888888888888877555555
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
..+..|...|.+.+.+.+|...|+.. +..|+..+|+-+..++.+.|+..+|.++.++.+-.
T Consensus 329 -~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 329 -LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred -hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67889999999999999999999987 88899999999999999999999999999987643
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-12 Score=84.27 Aligned_cols=50 Identities=28% Similarity=0.531 Sum_probs=45.4
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038542 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225 (475)
Q Consensus 176 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 225 (475)
||+++||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999998874
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.3e-09 Score=100.77 Aligned_cols=213 Identities=15% Similarity=0.132 Sum_probs=166.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
.|+.-.+.+-++..++.... +...|--+..+|....+-++....|++..+ .|..+|..-...+.-.+++++|..=|
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~-~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF 417 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPA-FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIADF 417 (606)
T ss_pred cCCchhhhhhHHHHHhcCcc-cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 35555566666666665433 333466677788888888888888887653 35667777777777788899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN 280 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 280 (475)
++..... +-+...|..+..+..+.+.++++...|++.++ .++.-++.|+.....+...+++++|.+.|+.. .+.|+
T Consensus 418 ~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 418 QKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred HHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 9988853 33456777777777889999999999999998 67777889999999999999999999999987 33332
Q ss_pred ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 281 ---------PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 281 ---------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+.+-..++..- -.+++..|..+++++.+.+|....+|..|...-...|+.++|.++|++-.
T Consensus 495 ~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 495 EHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22333333332 34899999999999999999999999999999999999999999998764
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.4e-12 Score=84.07 Aligned_cols=50 Identities=28% Similarity=0.591 Sum_probs=47.7
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038542 75 RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124 (475)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (475)
||+++||++|.+|++.|++++|+++|++|.+.|++||..||++++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999874
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-10 Score=109.05 Aligned_cols=232 Identities=17% Similarity=0.177 Sum_probs=176.9
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHc-----CC-CCCcc-HHHHHHHHHHhcCCHHHHHHHHHhcCC-------C-
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQ-----MV-NRSVG-LCNALIDMFAKCGDVDKALKLFRSMNG-------R- 176 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~-------~- 176 (475)
..++..+...|...|+++.|..++.+.++. |. .|.+. ..+.+...|...+++++|..+|+++.. +
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 446677888899999999999999988754 21 12222 234467889999999999999988742 1
Q ss_pred ---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CC-CCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC
Q 038542 177 ---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-----GV-PPDD-VAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246 (475)
Q Consensus 177 ---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 246 (475)
-..+++.|..+|.+.|++++|..++++..+- |. .|.. .-++.+...|...+.+++|..++....+.+.-.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 2367888889999999999999888876531 21 2232 246667778999999999999998776544322
Q ss_pred C------ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-
Q 038542 247 P------KIEHYGCMVDMLCRSGRVKEAHEFIQKM---------PIEA-NPIIWRTLISACCARGELKLAESITKRLIG- 309 (475)
Q Consensus 247 p------~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~- 309 (475)
| -..+++.|...|...|++++|+++++++ +..+ ....++.|..+|.+.+++++|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2 2367999999999999999999999987 2222 245677788999999999999999988653
Q ss_pred ---CCCCC---CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 310 ---NEPMH---ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 310 ---~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+|.. ..+|..|+.+|.+.|++++|.++.+....
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 34444 45788999999999999999999988864
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.2e-09 Score=105.92 Aligned_cols=201 Identities=12% Similarity=0.121 Sum_probs=113.3
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-------Ch-------hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-------TI-------VSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 141 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-------~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
.+-++.+.+.|.+...+...|++++|...|...... |. .-|| +...+-..++.+.|.+.|.....
T Consensus 446 ~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilk 524 (1018)
T KOG2002|consen 446 KGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILK 524 (1018)
T ss_pred cCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHH
Confidence 333455556666666666666666666666654321 11 1122 33333444555566666665555
Q ss_pred cCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCH
Q 038542 207 AGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEANP 281 (475)
Q Consensus 207 ~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~ 281 (475)
. .|.-+ .|..++..-...+...+|...++.... ....++..++.+...+.+...+..|.+-|..+ ...+|+
T Consensus 525 e--hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~--~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~ 600 (1018)
T KOG2002|consen 525 E--HPGYIDAYLRLGCMARDKNNLYEASLLLKDALN--IDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDA 600 (1018)
T ss_pred H--CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHh--cccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCch
Confidence 3 23322 233333222233555666666666654 44445555555555666666666666544333 333566
Q ss_pred HHHHHHHHHHHh------------cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 282 IIWRTLISACCA------------RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 282 ~~~~~li~~~~~------------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
.+.-+|.+.|.. .+..+.|.++|.+++..+|.|..+-+-+.-+++..|+|.+|..+|.+.++...
T Consensus 601 YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 601 YSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred hHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 655555554432 23456777777777777787776667777777778888888888877777554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.8e-09 Score=108.95 Aligned_cols=257 Identities=14% Similarity=0.039 Sum_probs=185.4
Q ss_pred ChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 038542 76 DSVSWSAMIGGYARL-----GLSTDAIDLFRQMQISGVCPD-EITMVTVLSACT---------DLGALEVGKWVESFIEK 140 (475)
Q Consensus 76 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 140 (475)
+...|...+.+-... +..++|+++|++..+. .|+ ...+..+..++. ..+++++|...++++++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 555666666664221 3457899999999875 565 445544444333 23457899999999988
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHH
Q 038542 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD-VAF 216 (475)
Q Consensus 141 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~ 216 (475)
.. +.+..++..+..++...|++++|...|++..+ | +...|..+...+...|++++|+..+++..+.. |+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~--P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLD--PTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCChhhH
Confidence 75 33677888888999999999999999998753 3 45678888999999999999999999998864 442 233
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCA 293 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~ 293 (475)
..++..+...|++++|...+++..+. . .| ++..+..+..+|...|++++|...++++ +..|+ ...++.+...+..
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~ 487 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQ 487 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhc
Confidence 34454566689999999999988763 2 34 4556777888899999999999999987 44454 4445556666677
Q ss_pred cCCHHHHHHHHHHHHhCC---CCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 294 RGELKLAESITKRLIGNE---PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.| +.|...++++.+.. |.++ ..+...|+-.|+-+.+..+ +++.+.+
T Consensus 488 ~g--~~a~~~l~~ll~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 488 NS--ERALPTIREFLESEQRIDNNP---GLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred cH--HHHHHHHHHHHHHhhHhhcCc---hHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 77 47888788776543 4433 3366677778888877766 7777654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-09 Score=93.69 Aligned_cols=281 Identities=15% Similarity=0.127 Sum_probs=212.2
Q ss_pred CCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC-CCh------hHHHHHHHHHHHcCChhH
Q 038542 23 IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-RDS------VSWSAMIGGYARLGLSTD 95 (475)
Q Consensus 23 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~-~~~------~~~~~li~~~~~~g~~~~ 95 (475)
.+..++|...|-+|.+.. +.+..+.-+|.+.|-+.| .+|.|.++.+.+.+ ||. ...-.|..-|...|-++.
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRG-EvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRG-EVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcc-hHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 467899999999999853 455566778888888888 99999999998875 332 245567788999999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHhcCCHHHHHHHHH
Q 038542 96 AIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV----GLCNALIDMFAKCGDVDKALKLFR 171 (475)
Q Consensus 96 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g~~~~A~~~~~ 171 (475)
|..+|..+.+.| .--......++..|-...+|++|..+-..+.+.+-++.. ..|.-|...+....+.+.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 999999998764 334567788999999999999999999999988755442 346667777777889999999999
Q ss_pred hcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC
Q 038542 172 SMNGRT---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK 248 (475)
Q Consensus 172 ~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~ 248 (475)
+..+.| +..--.+...+...|++..|++.++...+.+..--..+...|..+|.+.|+.+++..++..+.+. .++
T Consensus 205 kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g 281 (389)
T COG2956 205 KALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTG 281 (389)
T ss_pred HHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCC
Confidence 876543 34444456778899999999999999999764434567788899999999999999999988864 344
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEF-IQKMPIEANPIIWRTLISACCAR---GELKLAESITKRLIG 309 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~ 309 (475)
...-..+.+.-....-.+.|... .+.+.-+|+...+..|+..-..- |...+....++.|..
T Consensus 282 ~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 282 ADAELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred ccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 44444455544444445555554 45557789999999999876543 334555556666654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=6e-09 Score=104.05 Aligned_cols=311 Identities=16% Similarity=0.129 Sum_probs=172.8
Q ss_pred ChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCC------hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH--HH
Q 038542 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD------SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI--TM 115 (475)
Q Consensus 44 ~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~ 115 (475)
++.+.+.|.+.|.-.| +++.++.+...+...+ ..+|.-+.++|-..|++++|...|.+.... .||.+ .+
T Consensus 269 nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~ 345 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPL 345 (1018)
T ss_pred CcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccc
Confidence 3344444444444444 5555555554443321 224555556666666666666665555443 23332 22
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC----CHHHHHHHHHhcCCC---ChhHHHHHHHHH
Q 038542 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG----DVDKALKLFRSMNGR---TIVSWTSVIAGL 188 (475)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g----~~~~A~~~~~~~~~~---~~~~~~~li~~~ 188 (475)
..+...+...|+++.+...|+.+.+.. +.+..+...|...|...+ ..++|..++.+...+ |...|-.+...|
T Consensus 346 ~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 346 VGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL 424 (1018)
T ss_pred cchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 334455555666666666666555542 334444455555555443 344455555444432 344554444443
Q ss_pred HHcCChHHHHHHHHHHH----HcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC--CCCC------hhHHHHHH
Q 038542 189 AMHGRGLEAVALFEEML----EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG--IIPK------IEHYGCMV 256 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~----~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~p~------~~~~~~li 256 (475)
-+ ++...++..|.... ..+..+.....|.+...+...|+++.|...|........ ..++ ..+-..+.
T Consensus 425 e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred Hh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 33 33333355554432 334445556666666666777777777777766654210 1111 11223344
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHH
Q 038542 257 DMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334 (475)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 334 (475)
.++-..++++.|.+.|..+ ...|+ +..|.-++......++..+|...++.++..+..++.++..+.+.|.+...|..|
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a 583 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPA 583 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhccc
Confidence 5555566677777777666 33343 223333333333457788899999999988888888999999999999999999
Q ss_pred HHHHHHHHhCCCccCCCccEEEECC
Q 038542 335 TKIREVMDKRGMKKIPGSTLIELDN 359 (475)
Q Consensus 335 ~~~~~~m~~~~~~~~~~~s~~~~~~ 359 (475)
.+-|+...++-...+...|.+.+.+
T Consensus 584 ~k~f~~i~~~~~~~~D~YsliaLGN 608 (1018)
T KOG2002|consen 584 KKKFETILKKTSTKTDAYSLIALGN 608 (1018)
T ss_pred ccHHHHHHhhhccCCchhHHHHhhH
Confidence 9988887776555544455555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-09 Score=99.82 Aligned_cols=263 Identities=10% Similarity=-0.039 Sum_probs=210.3
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
|+...-....-+...+++++..++++...+. .+++...+..-|..+...|+-.+-..+-..+++. .|..+.+|-++.-
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~ 320 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGC 320 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHH
Confidence 3444445556677889999999999999876 3667777777777888888877777776777776 4557788999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNGRT---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 232 (475)
-|.-.|+.++|++.|.+...-| ...|-.+..+|+-.|..++|+..+...-+. ++-...-+.-+.--|.+.++.+.|
T Consensus 321 YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 321 YYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999999876443 478999999999999999999998887664 122222233455668889999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHH
Q 038542 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--------PIEA-NPIIWRTLISACCARGELKLAESI 303 (475)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p-~~~~~~~li~~~~~~g~~~~a~~~ 303 (475)
.++|.+... -.+.|+...+-+.-.....+.+.+|..+|+.. +-.+ -..+++.|..+|++.+.+++|+..
T Consensus 400 e~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~ 477 (611)
T KOG1173|consen 400 EKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDY 477 (611)
T ss_pred HHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHH
Confidence 999998874 33445667777777777788999999999876 1111 456789999999999999999999
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 304 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+++.+.+.|.+..+|.+++-+|...|+++.|...|.+...
T Consensus 478 ~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 478 YQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999987653
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.1e-09 Score=94.87 Aligned_cols=190 Identities=14% Similarity=0.080 Sum_probs=89.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
...+..+...|...|++++|.+.+++..... +.+...+..+...+...|++++|...+....+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 3445555566666666666666666655432 2233444455555555566666666665555543 2233344445555
Q ss_pred HHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 038542 157 FAKCGDVDKALKLFRSMNGR-----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 231 (475)
|...|++++|.+.|++.... ....+..+...+...|++++|...|.+..... +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 55555555555555554321 12233334444445555555555555544432 1223344444444444555555
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
|..+++..... .+.+...+..+...+...|+.++|..+
T Consensus 188 A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~ 225 (234)
T TIGR02521 188 ARAYLERYQQT--YNQTAESLWLGIRIARALGDVAAAQRY 225 (234)
T ss_pred HHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhhHHHHHHH
Confidence 55554444431 122233333333444444444444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-08 Score=94.03 Aligned_cols=182 Identities=11% Similarity=0.052 Sum_probs=134.6
Q ss_pred hcCCHHHHHHHHHhcCCCChhHHHHHH---HHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 038542 159 KCGDVDKALKLFRSMNGRTIVSWTSVI---AGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 235 (475)
..|++++|.+.+++....|...-.+|. -.+-..|+.++|++.|-++..- +..+......+.+.|....+..+|+++
T Consensus 502 ~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~ 580 (840)
T KOG2003|consen 502 ANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIEL 580 (840)
T ss_pred ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHH
Confidence 346777777777777766654433332 2355678888888888776543 334566667777888888888888888
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
+.+... -++.|+...+-|.+.|-+.|+-..|.+..-.- ..-| +..+..-|..-|....-++.++.+|+++.-+.|.
T Consensus 581 ~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 581 LMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 877764 56677888999999999999999988865443 3333 6667666777788888899999999999888886
Q ss_pred CCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 314 HESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
...-...+..++.+.|++.+|..+++....
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 544444555667788999999999988764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.22 E-value=9.2e-08 Score=88.48 Aligned_cols=315 Identities=11% Similarity=0.130 Sum_probs=191.8
Q ss_pred CCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC--CCChhHHHHHHHHHHHcCChhHHHHHH
Q 038542 23 IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIGGYARLGLSTDAIDLF 100 (475)
Q Consensus 23 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~ 100 (475)
.|++..|+++|+.-..- .|+...|++.|+.-.+.. .++.|+.++++.. .|++.+|--....=-+.|+...|..+|
T Consensus 154 LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRyk-eieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy 230 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYK-EIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY 230 (677)
T ss_pred hcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhh-HHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 35555555555554433 455555555555555555 5555555555543 355555555555555555555555555
Q ss_pred HHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCCHHHHHHHH----
Q 038542 101 RQMQISGVCPDEI----TMVTVLSACTDLGALEVGKWVESFIEKQMVNRS--VGLCNALIDMFAKCGDVDKALKLF---- 170 (475)
Q Consensus 101 ~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~---- 170 (475)
....+. -.|.. .|.+...-=.+...++.|..++...+.. ++.+ ...|..+...=-+-|+.....++.
T Consensus 231 erAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KR 307 (677)
T KOG1915|consen 231 ERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKR 307 (677)
T ss_pred HHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhh
Confidence 554432 11111 1222222222344455555555555543 1212 223333333333334433222221
Q ss_pred ----HhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHH---hcCCCHHHHH
Q 038542 171 ----RSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD-------VAFVGLLSAC---SHCGLVDKGR 233 (475)
Q Consensus 171 ----~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~---~~~g~~~~a~ 233 (475)
+.+... |-.+|--.+..-...|+.+...++|++.... ++|-. ..|.-+=-+| ....+++.+.
T Consensus 308 k~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr 386 (677)
T KOG1915|consen 308 KFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTR 386 (677)
T ss_pred hhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 112222 4456777777777788999999999988876 55532 1222221122 3467888888
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHH----HcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLC----RSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
++++...+ -++-..+|+.-+--+|+ ++.++..|.+++... |.-|-..++...|..-.+.+++|....++++.+
T Consensus 387 ~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfl 464 (677)
T KOG1915|consen 387 QVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFL 464 (677)
T ss_pred HHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 88888876 45555667766655554 678888999988877 888888899988988889999999999999999
Q ss_pred hCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 309 GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 309 ~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
+.+|.+..+|.-....-...|+++.|..+|+....+..
T Consensus 465 e~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ 502 (677)
T KOG1915|consen 465 EFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA 502 (677)
T ss_pred hcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc
Confidence 99999888888888888889999999999988876554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=4.5e-09 Score=106.15 Aligned_cols=227 Identities=12% Similarity=-0.013 Sum_probs=170.9
Q ss_pred CHHHHHHHHHHHh-----ccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh---------cCCHHHHHHHHHhcCC-
Q 038542 111 DEITMVTVLSACT-----DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK---------CGDVDKALKLFRSMNG- 175 (475)
Q Consensus 111 ~~~t~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~---------~g~~~~A~~~~~~~~~- 175 (475)
+...|...+.+-. ..+++++|...+++.++... .+...+..+..+|.. .+++++|...+++..+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l 333 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL 333 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence 4555656666532 23456889999999987642 244556666655542 3458899999998764
Q ss_pred --CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-hHH
Q 038542 176 --RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI-EHY 252 (475)
Q Consensus 176 --~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~ 252 (475)
.+...|..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...++...+. .|+. ..+
T Consensus 334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~ 409 (553)
T PRK12370 334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAG 409 (553)
T ss_pred CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhH
Confidence 366788888889999999999999999999864 444667888889999999999999999998863 4442 233
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM--PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m--~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 329 (475)
..+...+...|++++|...+++. ...| ++..+..+..++...|+.++|...++++....|.+......+...|...|
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 489 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS 489 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH
Confidence 34455577789999999999887 2235 45557778888889999999999999988888877777778888888888
Q ss_pred ChhHHHHHHHHHHhC
Q 038542 330 RWEKKTKIREVMDKR 344 (475)
Q Consensus 330 ~~~~a~~~~~~m~~~ 344 (475)
++|...++.+.+.
T Consensus 490 --~~a~~~l~~ll~~ 502 (553)
T PRK12370 490 --ERALPTIREFLES 502 (553)
T ss_pred --HHHHHHHHHHHHH
Confidence 4888877777653
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-09 Score=93.20 Aligned_cols=224 Identities=10% Similarity=0.035 Sum_probs=187.6
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcC
Q 038542 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHG 192 (475)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g 192 (475)
+.+.+.|.+.|-+.+|+..++...+. .|.+.+|..|-..|.+..+.+.|+.+|.+-.+. |+....-+...+-..+
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~ 304 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAME 304 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHH
Confidence 45777889999999999999988876 456667888889999999999999999887643 4444445667788889
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHH
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFI 272 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 272 (475)
+.++|.++++...+.. +.+......+...|...++++-|+.+++.+..- |+ .+++.|+.+.-+|.-.+++|-++.-|
T Consensus 305 ~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf 381 (478)
T KOG1129|consen 305 QQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSF 381 (478)
T ss_pred hHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHH
Confidence 9999999999998863 455667777788888999999999999999983 65 46778888888888899999999888
Q ss_pred HhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 273 QKM---PIEA--NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 273 ~~m---~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
++. ...| -..+|..|.......|++..|.+.|+-.+..+|++..+++.|.-.-.+.|+.++|..++......
T Consensus 382 ~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 382 QRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 877 2223 35689999999999999999999999999999999999999999999999999999999877653
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.3e-07 Score=94.12 Aligned_cols=335 Identities=15% Similarity=0.067 Sum_probs=244.7
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC---ChhHHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER---DSVSWSAMI 84 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~---~~~~~~~li 84 (475)
-+...|.+|...|-..|+.+++.+.+-.+.... +.|...|-.+.+...+.| .++.|.-.|.+..+. +....---+
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~-~i~qA~~cy~rAI~~~p~n~~~~~ers 248 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLG-NINQARYCYSRAIQANPSNWELIYERS 248 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcc-cHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 355789999999999999999988775555443 667789999999988988 999999999998764 333444456
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHhccCChHHHHHHHHHHHHc-CCCCCccHHHHHHHHHHh
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEIT----MVTVLSACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t----~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~ 159 (475)
..|-+.|+...|++-|.++.+...+.|..- .-.++..+...++-+.|.+.+...... +-..+...++.++.+|.+
T Consensus 249 ~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~ 328 (895)
T KOG2076|consen 249 SLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLK 328 (895)
T ss_pred HHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Confidence 788999999999999999998643223222 233455566677778888888776652 233466678899999999
Q ss_pred cCCHHHHHHHHHhcCC----CCh----------------------hHHH----HHHHHHHHcCChHHHHHHHHHHHHcCC
Q 038542 160 CGDVDKALKLFRSMNG----RTI----------------------VSWT----SVIAGLAMHGRGLEAVALFEEMLEAGV 209 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~----~~~----------------------~~~~----~li~~~~~~g~~~~A~~l~~~m~~~g~ 209 (475)
...++.|......+.. +|. .+|+ -+.-++...+..+....+.....+..+
T Consensus 329 ~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~ 408 (895)
T KOG2076|consen 329 NKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNV 408 (895)
T ss_pred hHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcC
Confidence 9999999887765543 111 1111 122334444444445555555555554
Q ss_pred CC--CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038542 210 PP--DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWR 285 (475)
Q Consensus 210 ~p--~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 285 (475)
.| +...|.-+..++.+.|++.+|..+|..+... ...-+...|-.+..+|...|..++|.+.|+.. ...| +...--
T Consensus 409 ~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri 487 (895)
T KOG2076|consen 409 WVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARI 487 (895)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhh
Confidence 44 4567888999999999999999999999974 33445778999999999999999999999988 4455 455556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCC---------CCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 286 TLISACCARGELKLAESITKRLIGNEP---------MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~~~p---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+|-..+.+.|+.++|.+.+..+..-++ +...........|...|+.++-..+-..|....
T Consensus 488 ~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~ 556 (895)
T KOG2076|consen 488 TLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTASTLVDDF 556 (895)
T ss_pred hHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 677788999999999999998763332 223344567788899999988877777776544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.12 E-value=5.6e-09 Score=91.92 Aligned_cols=229 Identities=13% Similarity=0.098 Sum_probs=193.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
+.|..+|.+.|.+.+|.+.|+.-... .|-..||..+-++|.+..+...|..++.+-++. ++.++.....+...+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 57889999999999999999988875 677888989999999999999999999988876 455666666778889999
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 038542 161 GDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237 (475)
Q Consensus 161 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 237 (475)
++.++|.++++...+ .++.+..++..+|.-.++++-|+..++++.+.|+ .+...|..+.-+|...+++|-++.-|.
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 999999999998764 3666777777888899999999999999999995 577889999999999999999999888
Q ss_pred HhhhhcCCCCC--hhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 238 SMKNDFGIIPK--IEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 238 ~m~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
..... --.|+ ...|..+.......|++.-|.+.|+-. ....+...++.|...-.+.|+++.|..++..+....|.
T Consensus 383 RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 383 RALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 87763 33343 357778888888899999999999887 32336788999998889999999999999999988875
Q ss_pred C
Q 038542 314 H 314 (475)
Q Consensus 314 ~ 314 (475)
-
T Consensus 462 m 462 (478)
T KOG1129|consen 462 M 462 (478)
T ss_pred c
Confidence 3
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.4e-07 Score=84.36 Aligned_cols=305 Identities=10% Similarity=-0.033 Sum_probs=215.4
Q ss_pred CCCCcchHHHHHHHHHc--CCCcHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhH---
Q 038542 6 VSPNKFTYPFVLKACAG--IGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVS--- 79 (475)
Q Consensus 6 ~~p~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~--- 79 (475)
++|+-.+....+.+++. .++...+.+.+-.+... -++.|+.....+.+.|...| +.+.|...|++...-|+.+
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~G-dn~~a~~~Fe~~~~~dpy~i~~ 268 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNG-DYFQAEDIFSSTLCANPDNVEA 268 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhc-CchHHHHHHHHHhhCChhhhhh
Confidence 44555555555555443 35555555655555443 35777888889999999998 9999999998876543333
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
.....-.+.+.|+.++...+...+.... .-+...|..-+...-..++++.|..+-++.++... -+...+-.-.+++..
T Consensus 269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 269 MDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHh
Confidence 2233445567888888888888776531 22333343444445567788888888877776532 244455555577888
Q ss_pred cCCHHHHHHHHHhcC--C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHh-cCCCHHHHHH
Q 038542 160 CGDVDKALKLFRSMN--G-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL-SACS-HCGLVDKGRE 234 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll-~~~~-~~g~~~~a~~ 234 (475)
.|+.++|.-.|+... . -+..+|.-|+..|...|++.+|.-+-+..... ++.+..+...+. ..|. ....-++|..
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKk 425 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKK 425 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHH
Confidence 899999998888654 3 37789999999999999999998877766554 455666665552 3333 3344577888
Q ss_pred HHHHhhhhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 235 YFDSMKNDFGIIPKI-EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 235 ~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
+++.-. .+.|+- ...+.+...+.+.|..+++..++++. ...||....+.|.+.+...+.+++|...|..++.++|
T Consensus 426 f~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 426 FAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 887765 345653 45566777888999999999999887 6678999999999999999999999999999999999
Q ss_pred CCCch
Q 038542 313 MHESN 317 (475)
Q Consensus 313 ~~~~~ 317 (475)
.+..+
T Consensus 503 ~~~~s 507 (564)
T KOG1174|consen 503 KSKRT 507 (564)
T ss_pred cchHH
Confidence 87543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.10 E-value=2e-08 Score=97.21 Aligned_cols=230 Identities=14% Similarity=0.115 Sum_probs=173.9
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHC-----CC-CCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHc-----CC--C
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQIS-----GV-CPDEIT-MVTVLSACTDLGALEVGKWVESFIEKQ-----MV--N 144 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~--~ 144 (475)
+...+...|...|+++.|+.++....+. |. .|...+ ...+...|...+.+++|..+|+.+... |- +
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 5555899999999999999999988764 21 233333 334666788999999999999988743 21 1
Q ss_pred CCccHHHHHHHHHHhcCCHHHHHHHHHhcCC----------CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHc---CCC
Q 038542 145 RSVGLCNALIDMFAKCGDVDKALKLFRSMNG----------RTI-VSWTSVIAGLAMHGRGLEAVALFEEMLEA---GVP 210 (475)
Q Consensus 145 ~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~ 210 (475)
.-..+++.|..+|.+.|++++|...++...+ +.+ ..++.++..+...+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 1234566677789999999998887765431 122 34667788899999999999999876542 122
Q ss_pred CC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc----C-CCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-----
Q 038542 211 PD----DVAFVGLLSACSHCGLVDKGREYFDSMKNDF----G-IIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM----- 275 (475)
Q Consensus 211 p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~----~-~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----- 275 (475)
++ ..+++.|...|.+.|++++|.++|++..... + ..+ ....++.|...|.+.++..+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 33 3578999999999999999999999887542 1 122 2456788889999999999999988876
Q ss_pred ---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 276 ---PIEAN-PIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 276 ---~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+..|+ ..+|..|...|...|+++.|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 33454 5689999999999999999999999876
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.9e-08 Score=89.02 Aligned_cols=216 Identities=14% Similarity=0.017 Sum_probs=137.0
Q ss_pred CChhHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 038542 91 GLSTDAIDLFRQMQISG-VCPD--EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167 (475)
Q Consensus 91 g~~~~A~~~~~~m~~~g-~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 167 (475)
+..+.++.-+.++.... +.|+ ...|..+...+...|+.++|...+...++.. +.+...|+.+...|...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34566666666666432 1222 2345555566777777888877777777764 335677788888888888888888
Q ss_pred HHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 038542 168 KLFRSMNG--R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244 (475)
Q Consensus 168 ~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 244 (475)
..|++..+ | +..+|..+...+...|++++|++.|++..+. .|+..........+...++.++|...|..... .
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~ 194 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE--K 194 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--h
Confidence 88877643 2 4567777777888888888888888888774 34432222222234456778888888866554 3
Q ss_pred CCCChhHHHHHHHHHHHcCCHHH--HHHHHHhC-CC----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 245 IIPKIEHYGCMVDMLCRSGRVKE--AHEFIQKM-PI----EA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~--A~~~~~~m-~~----~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..|+...+ .+... ..|+..+ +.+.+.+. .. .| ....|..+...+...|++++|...|+++.+.+|.+
T Consensus 195 ~~~~~~~~-~~~~~--~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 195 LDKEQWGW-NIVEF--YLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred CCccccHH-HHHHH--HccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 33333222 22222 3444433 23222221 11 11 34578889999999999999999999999998754
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.5e-07 Score=87.50 Aligned_cols=152 Identities=14% Similarity=0.109 Sum_probs=127.9
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 038542 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269 (475)
Q Consensus 190 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (475)
-.|+.-.|...|+........++. .|..+...|....+.++.++.|+...+ --+.++.+|..-..++.-.+++++|.
T Consensus 338 L~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~--ldp~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 338 LKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAED--LDPENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHh--cCCCCCchhHhHHHHHHHHHHHHHHH
Confidence 357788888888888876533333 377788889999999999999999885 33446677888888888889999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 270 EFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 270 ~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.-|++. .+.| +...|-.+.-+..+.++++++...|++.++..|..+..|+....++...+++++|.+.++...+.
T Consensus 415 aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 415 ADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 999998 6677 56777777777788899999999999999999999999999999999999999999999988653
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.9e-08 Score=91.87 Aligned_cols=212 Identities=14% Similarity=0.051 Sum_probs=152.5
Q ss_pred CChHHHHHHHHHHHHcC-CCC--CccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHH
Q 038542 126 GALEVGKWVESFIEKQM-VNR--SVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~ 199 (475)
+..+.+..-+.+++... ..| ....|..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|..
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~ 119 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYE 119 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 35566666676676432 222 235677888899999999999999998753 367899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CC
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PI 277 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~ 277 (475)
.|++..+.. +-+..++..+..++...|++++|.+.|+...+. .|+..........+...++.++|...|.+. ..
T Consensus 120 ~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 120 AFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 999999853 234677888888999999999999999998863 444322222223345678899999999765 22
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-------hCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 278 EANPIIWRTLISACCARGELKLAESITKRLI-------GNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.|+...| .......|+...+ +.++.+. +..|....+|..++..|...|++++|...|++..+.+
T Consensus 196 ~~~~~~~---~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 196 DKEQWGW---NIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred CccccHH---HHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 3333222 2223335555444 3444444 3345566789999999999999999999999988654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.01 E-value=6.6e-08 Score=81.46 Aligned_cols=163 Identities=18% Similarity=0.156 Sum_probs=131.5
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (475)
...|.-+|.+.|+...|..-+++..+.. +-+..++..+...|.+.|..+.|.+.|+...+ --+-+..+.|....-+|
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHH
Confidence 4456677888888888888888888863 34456788888888888999999888888775 22334577788888888
Q ss_pred HcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 261 RSGRVKEAHEFIQKM---PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 261 ~~g~~~~A~~~~~~m---~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
..|++++|...|++. |.-| -..+|..+.-...+.|+.+.|...+++.++.+|..+.+...+.+...+.|++-.|..
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHH
Confidence 889999999998887 2222 356788888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCC
Q 038542 337 IREVMDKRGM 346 (475)
Q Consensus 337 ~~~~m~~~~~ 346 (475)
.++.....+.
T Consensus 195 ~~~~~~~~~~ 204 (250)
T COG3063 195 YLERYQQRGG 204 (250)
T ss_pred HHHHHHhccc
Confidence 9988876653
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-07 Score=86.16 Aligned_cols=277 Identities=13% Similarity=0.029 Sum_probs=211.2
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER---DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 118 (475)
..++.+.....+-+-..+ ++.+..++++.+.+. ....+-.-|.++...|+..+-..+=.+|... .+-.+.+|-++
T Consensus 241 ~~~~dll~~~ad~~y~~c-~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aV 318 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGC-RFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAV 318 (611)
T ss_pred hhcHHHHHHHHHHHHHcC-hHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhH
Confidence 344455555666666667 899999999988764 4556677788999999999888888888875 24457799888
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChH
Q 038542 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGL 195 (475)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 195 (475)
.--|...|..++|++.+.+....... -...|-.+...|+-.|.-|.|...+....+ ..-..+--+.--|.+.+..+
T Consensus 319 g~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~k 397 (611)
T KOG1173|consen 319 GCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLK 397 (611)
T ss_pred HHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHH
Confidence 88888889999999999988765422 345788899999999999999887765432 11122222445688899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc-CC---C-CChhHHHHHHHHHHHcCCHHHHHH
Q 038542 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF-GI---I-PKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 196 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~---~-p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
-|.+.|.+...- .+-|+...+-+.-...+.+.+.+|..+|+.....- .+ . -...+++.|..+|.+.+++++|..
T Consensus 398 LAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 398 LAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 999999988774 24456677777766677899999999998876310 01 1 144568889999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 271 FIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 271 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
.++.. ...| +..++.++.-.+...|+++.|...|.+.+.+.|++..+-..|.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99988 3333 7889999999999999999999999999999998855444443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.6e-06 Score=85.21 Aligned_cols=282 Identities=15% Similarity=0.146 Sum_probs=160.9
Q ss_pred HHHhCCCCHHHHHHHHhccCC--CChh-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-c-----
Q 038542 54 MYGSCEGGIELGRKVFDEMSE--RDSV-SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT-D----- 124 (475)
Q Consensus 54 ~~~~~gg~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-~----- 124 (475)
.+...| ++++|++.++.-.. .|.. ........+.+.|+.++|..+|..+...+ |+...|-..+..+. -
T Consensus 13 il~e~g-~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 13 ILEEAG-DYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHCC-CHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 344555 77777777766443 2333 33445566677777777777777777653 44444443333332 1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH-HHHHHHHhcCCCCh-hHHHHHHHHHHHcCChHHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD-KALKLFRSMNGRTI-VSWTSVIAGLAMHGRGLEAVALFE 202 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~-~A~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~ 202 (475)
..+.+....+++.+.+.- |.......+.-.+.....+. .+...+..+..+++ .+|+.+-..|....+..-...++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 123555566666665442 22111211211111111122 23333344444444 345555555554444444444444
Q ss_pred HHHHc----C----------CCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHcCCH
Q 038542 203 EMLEA----G----------VPPDD--VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRSGRV 265 (475)
Q Consensus 203 ~m~~~----g----------~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~ 265 (475)
..... + -+|.. .++..+...|...|+.++|+.+++.... . .|+ ++.|..-...|-+.|++
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~--h-tPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIE--H-TPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--c-CCCcHHHHHHHHHHHHHCCCH
Confidence 44321 1 12333 3556667778888888888888887775 2 344 67788888888888888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCc-----hH--HHHHHHHHhccChhHH
Q 038542 266 KEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNE--PMHES-----NY--VLLSHIYAKLLRWEKK 334 (475)
Q Consensus 266 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--p~~~~-----~~--~~l~~~~~~~g~~~~a 334 (475)
.+|.+.++.. ...+ |..+=+.....+.+.|++++|.+.+......+ |...- .| .-.+.+|.+.|++..|
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~A 324 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLA 324 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 8888888777 3333 55555666777788888888888888776554 22100 12 3456778888888888
Q ss_pred HHHHHHHHh
Q 038542 335 TKIREVMDK 343 (475)
Q Consensus 335 ~~~~~~m~~ 343 (475)
.+-+..+.+
T Consensus 325 Lk~~~~v~k 333 (517)
T PF12569_consen 325 LKRFHAVLK 333 (517)
T ss_pred HHHHHHHHH
Confidence 877666543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.98 E-value=4.3e-06 Score=77.72 Aligned_cols=332 Identities=11% Similarity=0.088 Sum_probs=249.9
Q ss_pred CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC------Chh
Q 038542 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER------DSV 78 (475)
Q Consensus 5 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~------~~~ 78 (475)
...|+...|.+.++-=.+-..++.|+.+++..+-. .|++..|-.-...--++| .+..|+.+|+...+. +..
T Consensus 169 ~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g-~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 169 EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHG-NVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHhhhHHHHHH
Confidence 35799999999999989999999999999998865 699999998888888998 999999999887642 334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCCh---HHHHH-----HHHHHHHcCCCCCcc
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD--EITMVTVLSACTDLGAL---EVGKW-----VESFIEKQMVNRSVG 148 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~---~~a~~-----~~~~~~~~~~~~~~~ 148 (475)
.+++....=.++..++.|.-+|.-.... ++-+ ...|.....-=-+-|+. +.+.- -++.+++. -+.|-.
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~-np~nYD 323 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSK-NPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHh-CCCCch
Confidence 5555555556678889999999888765 3333 33444444443344443 33321 12333333 244666
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC--Ch---hHHHHHH--------HHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGR--TI---VSWTSVI--------AGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~---~~~~~li--------~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 215 (475)
+|--.++.-...|+.+...++|++.... .. ..|.--| -.-....+.+.+.++|+...+. ++-..+|
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFt 402 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFT 402 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccch
Confidence 7777788888889999999999987532 11 2222222 1223568899999999999884 4555678
Q ss_pred HHHHHHHHh----cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 038542 216 FVGLLSACS----HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLIS 289 (475)
Q Consensus 216 ~~~ll~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 289 (475)
|..+=-.|+ +..++..|.+++.... |.-|...++...|..=.+.+.++.+.+++++. ...| |..+|.....
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHH
Confidence 876544443 5788999999998876 88999999999999999999999999999987 5666 7889999988
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 290 ACCARGELKLAESITKRLIGNEPMH--ESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 290 ~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.-...|+.+.|..+|+-++.....+ ...+...+..-...|.++.|..+++.+.+..
T Consensus 480 lE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred HHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 8889999999999999988765322 2345666666678999999999999998754
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.3e-06 Score=78.13 Aligned_cols=262 Identities=13% Similarity=0.011 Sum_probs=187.2
Q ss_pred CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHH
Q 038542 75 RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT-MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL 153 (475)
Q Consensus 75 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 153 (475)
.|+....++...+...|+.++|+..|++.+.. .|+..+ ...-.-.+.+.|+++....+...+.... +.+...|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 37888889999999999999999999988763 444332 2222223456778887777766665432 1122222222
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 230 (475)
........+++.|+.+-++..+ +++..+-.-...+.+.|+.++|.-.|+..+... +-+...|..|+.+|...|.+.
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHH
Confidence 3334456778888888887654 355555555567788899999999999988742 346789999999999999999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHH-HHHHH-cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYGCMV-DMLCR-SGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~~li-~~~~~-~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
+|...-+...+ -+..+..+.+.+. ..+.- ...-++|.+++++. .++|+ ....+.+...|..-|..+.++.++++
T Consensus 386 EA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~ 463 (564)
T KOG1174|consen 386 EANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEK 463 (564)
T ss_pred HHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHH
Confidence 99887777665 3444555555442 23322 22347788898887 67775 45567777888889999999999999
Q ss_pred HHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 307 LIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 307 ~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+...|+. ...+.|...+.....+.+|...|.....
T Consensus 464 ~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 464 HLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred HHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 99988864 6788999999999999999998876654
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.9e-07 Score=87.69 Aligned_cols=257 Identities=13% Similarity=0.067 Sum_probs=183.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc--
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEIT-MVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC-- 160 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~-- 160 (475)
...+...|++++|++.+..-... .+|..+ +......+.+.|+.++|..++..+++.+. .+...|..|..+..-.
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~ 87 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQ 87 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcc
Confidence 45668899999999999876543 556554 45666778999999999999999999863 3666666676666332
Q ss_pred ---CCHHHHHHHHHhcCCCCh--hHHHHHHHHHHHcCCh-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 038542 161 ---GDVDKALKLFRSMNGRTI--VSWTSVIAGLAMHGRG-LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234 (475)
Q Consensus 161 ---g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 234 (475)
.+.+...++|+++..... .+...+.-.+.....+ ..+..++..+...|+++ +|+.|-..|......+-..+
T Consensus 88 ~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 88 LSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 256777788887754321 1111111112221223 24556677778888653 56667667776666666666
Q ss_pred HHHHhhhhc-------------CCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCH
Q 038542 235 YFDSMKNDF-------------GIIPKI--EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGEL 297 (475)
Q Consensus 235 ~~~~m~~~~-------------~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~ 297 (475)
++....... .-+|+. .++.-+...|-..|++++|++++++. ...|+ +..|..-...+...|++
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~ 244 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL 244 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH
Confidence 666654321 113444 34566678899999999999999987 56675 66788888899999999
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
++|.+.++.+.++++.|...-.-.+..+.++|+.++|.+++....+.+.
T Consensus 245 ~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 245 KEAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 9999999999999988866666677788999999999999999987775
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.6e-06 Score=78.79 Aligned_cols=259 Identities=13% Similarity=-0.020 Sum_probs=137.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH---HHHHHhccCChHHHHHHHHHHHHcCCCCC-ccHHHHHHHHHHh
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT---VLSACTDLGALEVGKWVESFIEKQMVNRS-VGLCNALIDMFAK 159 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~---ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~li~~y~~ 159 (475)
...+...|++++|.+.+++..+.. +.|...+.. ........+....+.+.+.. .....|+ ......+...+..
T Consensus 50 a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 50 ALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 344556677777777777766542 223323321 11111123334444444333 1111222 2233345556677
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHhcCCCHHHHH
Q 038542 160 CGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPDD--VAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~ll~~~~~~g~~~~a~ 233 (475)
.|++++|...+++..+ .+...+..+...|...|++++|...+++...... .|+. ..|..+...+...|+.++|.
T Consensus 127 ~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 127 AGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred cCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 7777777777776543 2445666667777777777777777777665421 1222 23445666777777787777
Q ss_pred HHHHHhhhhcCCCCChhHH-H--HHHHHHHHcCCHHHHHHH---HHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHY-G--CMVDMLCRSGRVKEAHEF---IQKM----PIEANPIIWRTLISACCARGELKLAESI 303 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~g~~~~A~~~---~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~ 303 (475)
.+++.........+..... + .++..+...|..+.+.++ .... +.............++...|+.+.|..+
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 7777765321111111111 1 222333333432222222 1111 1111122223456667788889999998
Q ss_pred HHHHHhCC-C--------CCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 304 TKRLIGNE-P--------MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 304 ~~~~~~~~-p--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
++.+.... . ...........++...|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 88876432 1 123344566667789999999999998877644
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.3e-08 Score=88.96 Aligned_cols=242 Identities=14% Similarity=0.057 Sum_probs=104.4
Q ss_pred CHHHHHHHHhccCC-C--ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 038542 61 GIELGRKVFDEMSE-R--DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESF 137 (475)
Q Consensus 61 ~~~~A~~~f~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 137 (475)
++..+..-.+.-.. + +.....-+.++|...|+++.++ .+..... .|.......+...+....+-+.+..-+..
T Consensus 16 ~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~ 91 (290)
T PF04733_consen 16 NYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKE 91 (290)
T ss_dssp -HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHH
T ss_pred hHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 66666644431111 1 2334445566666666655433 3333222 45554444444333332333333222222
Q ss_pred HHHcCCC-CCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038542 138 IEKQMVN-RSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216 (475)
Q Consensus 138 ~~~~~~~-~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 216 (475)
....... .+..+......+|...|++++|++++.+. .+.......+..|.+.++++.|.+.++.|.+. ..|. +.
T Consensus 92 ~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l 166 (290)
T PF04733_consen 92 LLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-IL 166 (290)
T ss_dssp CCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HH
T ss_pred HHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HH
Confidence 2211111 12222222234455566666666666554 34455555566666666666666666666553 2232 22
Q ss_pred HHHHHHHh----cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038542 217 VGLLSACS----HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISA 290 (475)
Q Consensus 217 ~~ll~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 290 (475)
..+..++. ....+.+|..+|+++.. ...+++.+.+.+.-+....|++++|.+++++. ...| ++.+...++..
T Consensus 167 ~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~ 244 (290)
T PF04733_consen 167 TQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVC 244 (290)
T ss_dssp HHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHH
Confidence 23333322 12345556666655544 23344444555555555555555555554443 2222 33344444444
Q ss_pred HHhcCCH-HHHHHHHHHHHhCCCC
Q 038542 291 CCARGEL-KLAESITKRLIGNEPM 313 (475)
Q Consensus 291 ~~~~g~~-~~a~~~~~~~~~~~p~ 313 (475)
....|+. +.+.+.+.++....|.
T Consensus 245 ~~~~gk~~~~~~~~l~qL~~~~p~ 268 (290)
T PF04733_consen 245 SLHLGKPTEAAERYLSQLKQSNPN 268 (290)
T ss_dssp HHHTT-TCHHHHHHHHHCHHHTTT
T ss_pred HHHhCCChhHHHHHHHHHHHhCCC
Confidence 4444444 3344444444444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.5e-08 Score=92.25 Aligned_cols=219 Identities=11% Similarity=0.026 Sum_probs=175.2
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHH
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAV 198 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~ 198 (475)
+.+.|++.+|.-.|+..++.. +.+...|.-|.......++-..|+..+++..+- |....-+|.-.|...|.-.+|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 467788999999999888875 347788888888888888888888888887643 5677777888899999999999
Q ss_pred HHHHHHHHcCCC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 199 ALFEEMLEAGVP--------PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 199 ~l~~~m~~~g~~--------p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
+.|+.-.....+ ++..+-.. ..+.....+....++|-.+....+..+|+..+.+|.-.|--.|.+++|.+
T Consensus 374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 374 KMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 999988654211 00000000 12223334455666777776655767888999999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 271 FIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 271 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.|+.+ .++| |..+||-|...++...+..+|+..+.+++++.|.-..+...|.-.|...|.+++|.+.|-....
T Consensus 452 cf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 452 CFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99998 7778 7889999999999999999999999999999999999999999999999999999998876654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.5e-07 Score=84.60 Aligned_cols=244 Identities=12% Similarity=0.066 Sum_probs=145.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 164 (475)
+-+.-.|++..++.-.+ .....-..+......+.+++...|.++.+ ...+.+.. +|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~v---l~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSV---LSEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHH---HHHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHH---HHHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 44455677877776555 22221112233445566777777776543 23333332 555555555544443334556
Q ss_pred HHHHHHHhcC-CCC---hhHHHH-HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 165 KALKLFRSMN-GRT---IVSWTS-VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 165 ~A~~~~~~~~-~~~---~~~~~~-li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
.+..-+++.. ++. -.++.. ....+...|++++|+++++.- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6666555443 221 112222 223355568888888877642 34555666777888888888888888888
Q ss_pred hhhcCCCCChhHHHHHHHHHH----HcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 240 KNDFGIIPKIEHYGCMVDMLC----RSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
.+ +..| .+...+..++. -...+.+|..+|+++ ...+++.+.+.+..++...|++++|.+++++..+.+|.
T Consensus 158 ~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 74 2333 33334444433 234678888888888 44467778888888888888888888888888888888
Q ss_pred CCchHHHHHHHHHhccCh-hHHHHHHHHHHh
Q 038542 314 HESNYVLLSHIYAKLLRW-EKKTKIREVMDK 343 (475)
Q Consensus 314 ~~~~~~~l~~~~~~~g~~-~~a~~~~~~m~~ 343 (475)
++.+...++-+....|+. +.+.+.+.+++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 888888888888888877 556677777665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-06 Score=91.53 Aligned_cols=199 Identities=14% Similarity=0.141 Sum_probs=171.3
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNGR--------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 217 (475)
....|-..|......+++++|++++++.... -...|-++++.-...|.-+...++|++..+.- -.-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4557888888899999999999999987532 23678888888888898889999999998852 2245688
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHh
Q 038542 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEANPIIWRTLISACCA 293 (475)
Q Consensus 218 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~ 293 (475)
.|...|.+.+..++|.++++.|.+.++ .....|...++.+.+..+-+.|..++.++ |-+-........+..-.+
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFK 1612 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhh
Confidence 899999999999999999999999766 67788999999999999999999999887 333356666677777789
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 348 (475)
.|+.+++..+|+..+...|.....|..++++-.+.|+.+.++.+|++....++.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 9999999999999999999999999999999999999999999999999888654
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3.3e-06 Score=71.44 Aligned_cols=188 Identities=13% Similarity=0.050 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFA 158 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~ 158 (475)
+...|.-+|.+.|+...|..-+++.++.. +-+..++..+...|.+.|..+.|.+.|+..++... -+..+.|...-.+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 45567778888888888888888887752 22455777777778888888888888888877643 35566777777777
Q ss_pred hcCCHHHHHHHHHhcC-CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 038542 159 KCGDVDKALKLFRSMN-GR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 159 ~~g~~~~A~~~~~~~~-~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 233 (475)
..|++++|...|++.. .| -..+|..+.-+..+.|+.+.|.+.|++..+.. +-...+...+.......|++-.|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence 7777777777777654 33 22566666666667777777777777776653 333445566666666677777777
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
.+++.... +..++..+.-..|..-.+.|+-+.+.+.
T Consensus 194 ~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y 229 (250)
T COG3063 194 LYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRY 229 (250)
T ss_pred HHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHH
Confidence 77666665 2335555555555555555655555443
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.7e-05 Score=75.21 Aligned_cols=155 Identities=9% Similarity=-0.003 Sum_probs=89.6
Q ss_pred HHHcCCCcHHHHHHHHHHHHh-cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHH
Q 038542 19 ACAGIGDLNLGKSVHGAVLKF-QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAI 97 (475)
Q Consensus 19 ~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~ 97 (475)
...++|++...+..|+..+.. .+.....+|...+......+ -++.+.+++++-.+-++..-+.-|..++..+++++|-
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~-lPets~rvyrRYLk~~P~~~eeyie~L~~~d~~~eaa 189 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHG-LPETSIRVYRRYLKVAPEAREEYIEYLAKSDRLDEAA 189 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCC-ChHHHHHHHHHHHhcCHHHHHHHHHHHHhccchHHHH
Confidence 334556666666666665543 12223345666666555555 6777777777776666666677777777788888777
Q ss_pred HHHHHHHHCC------CCCCHHHHHHHHHHHhccCChHHHH---HHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHH
Q 038542 98 DLFRQMQISG------VCPDEITMVTVLSACTDLGALEVGK---WVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALK 168 (475)
Q Consensus 98 ~~~~~m~~~g------~~p~~~t~~~ll~~~~~~~~~~~a~---~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~ 168 (475)
+.+....... .+.+...|..+....++..+.-... .++...+..-.+.-...|++|.+-|.+.|.+++|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 7777665421 1333444555555444443333222 222222222111123467888888888888888888
Q ss_pred HHHhcC
Q 038542 169 LFRSMN 174 (475)
Q Consensus 169 ~~~~~~ 174 (475)
+|++..
T Consensus 270 vyeeai 275 (835)
T KOG2047|consen 270 VYEEAI 275 (835)
T ss_pred HHHHHH
Confidence 877543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2e-05 Score=77.75 Aligned_cols=126 Identities=14% Similarity=0.086 Sum_probs=102.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 038542 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG 295 (475)
Q Consensus 218 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 295 (475)
.....+...+..++|...+.+..+ ........|......+...|.+++|.+.|... .+.| ++.+..++...+...|
T Consensus 655 laa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G 732 (799)
T KOG4162|consen 655 LAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELG 732 (799)
T ss_pred HHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC
Confidence 344556667777777776666654 33445566777777888899999999988877 6667 5778889999999999
Q ss_pred CHHHHHH--HHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 296 ELKLAES--ITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 296 ~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+...|.. ++..+.+.+|.++..|..|..++-+.|+.++|.+-|....+..
T Consensus 733 ~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 733 SPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred CcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9888888 9999999999999999999999999999999999998887644
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.4e-05 Score=70.21 Aligned_cols=121 Identities=15% Similarity=0.149 Sum_probs=84.4
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CC-CCHHHHHHHH-HHHHhcCC
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IE-ANPIIWRTLI-SACCARGE 296 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~-p~~~~~~~li-~~~~~~g~ 296 (475)
..++.-..++++.+-+++.+.. |-...|.+.+| +..+++..|.+.+|+++|-.+. .+ .|..+|.+++ ..|...+.
T Consensus 366 As~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkk 443 (557)
T KOG3785|consen 366 ASYFFLSFQFDDVLTYLNSIES-YFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKK 443 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCC
Confidence 3333444578899999998887 34445555544 6889999999999999998872 11 3666776655 56677888
Q ss_pred HHHHHHHHHHHHhCC-CCCC-chHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 297 LKLAESITKRLIGNE-PMHE-SNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 297 ~~~a~~~~~~~~~~~-p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
++.|..++ ++.+ |.+. .....+.+.|.+++.+--|.+.|+.+...+
T Consensus 444 P~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 444 PQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred chHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 88876655 4444 3322 234456678889999999999999887654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.74 E-value=6.4e-05 Score=71.97 Aligned_cols=293 Identities=10% Similarity=0.035 Sum_probs=177.1
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcC-CCChhHHHHH-HHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHH
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQF-GDDIHVQNTL-VHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGG 86 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~-~~~~~~~~~l-i~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~ 86 (475)
.|..+...+...|+.+.+...+....+... .++..-...+ ...+...| ++++|.+.+++..+ | |...++. ...
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~P~~~~a~~~-~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAG-DLPKALALLEQLLDDYPRDLLALKL-HLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHCCCcHHHHHH-hHH
Confidence 445555566666778877666666555421 2222222222 22344556 99999999887653 3 4445553 223
Q ss_pred HHH----cCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 038542 87 YAR----LGLSTDAIDLFRQMQISGVCPDE-ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 87 ~~~----~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 161 (475)
+.. .+....+.+.+.. .....|+. .....+...+...|++++|...++...+.. +.+...+..+...|...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 333 3455555555544 12233443 344455667889999999999999999875 445778888999999999
Q ss_pred CHHHHHHHHHhcCCC-----Ch--hHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHhcCCCHH
Q 038542 162 DVDKALKLFRSMNGR-----TI--VSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPDDVAF-V--GLLSACSHCGLVD 230 (475)
Q Consensus 162 ~~~~A~~~~~~~~~~-----~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~-~--~ll~~~~~~g~~~ 230 (475)
++++|...+++.... +. ..|..+...+...|+.++|..++++...... .+..... + .++.-+...|..+
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~ 242 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD 242 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence 999999999986532 22 3466788889999999999999999865322 1222221 1 2333334445444
Q ss_pred HHHHH--HHHhhhhcCCC--CChhHHHHHHHHHHHcCCHHHHHHHHHhCC--CCC---CH----HHHHHHH--HHHHhcC
Q 038542 231 KGREY--FDSMKNDFGII--PKIEHYGCMVDMLCRSGRVKEAHEFIQKMP--IEA---NP----IIWRTLI--SACCARG 295 (475)
Q Consensus 231 ~a~~~--~~~m~~~~~~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--~~p---~~----~~~~~li--~~~~~~g 295 (475)
.+.++ +...... ... ...........++...|+.++|..+++.+. ... .. .+-..++ -++...|
T Consensus 243 ~~~~w~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 243 VGDRWEDLADYAAW-HFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred hHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 33333 2111111 111 111222346667788999999999998871 111 11 1222233 3456889
Q ss_pred CHHHHHHHHHHHHhC
Q 038542 296 ELKLAESITKRLIGN 310 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~ 310 (475)
+.+.|.+.+......
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-06 Score=75.38 Aligned_cols=315 Identities=13% Similarity=0.119 Sum_probs=182.5
Q ss_pred CccCCCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CChh
Q 038542 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RDSV 78 (475)
Q Consensus 1 M~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~~~ 78 (475)
|.-.|+..-...+++++....+..++..|.+++..-.++. +.+..-.+.|...|-+.. ++..|-..++++.. |...
T Consensus 1 M~~~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q-~f~~AA~CYeQL~ql~P~~~ 78 (459)
T KOG4340|consen 1 MAGSGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQ-EFALAAECYEQLGQLHPELE 78 (459)
T ss_pred CCcccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhChHHH
Confidence 4456666666778888887888888888888877766653 335566667777777777 88888888888764 3222
Q ss_pred HHH-HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 79 SWS-AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA--CTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 79 ~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
-|. --...+-+.+.+..|+++...|... |+...-..-+.+ .-+.+++..++.+.++.-..| +..+.+...-
T Consensus 79 qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gC 152 (459)
T KOG4340|consen 79 QYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGC 152 (459)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchh
Confidence 222 1234555677888888888777642 332222222222 234556666666555543221 2333333444
Q ss_pred HHHhcCCHHHHHHHHHhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNGR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 231 (475)
...+.|+++.|.+-|+...+- ....||..+ +..+.|+.+.|+++..++.+.|++..+.. + .|..-+
T Consensus 153 llykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPEl-g--------IGm~te 222 (459)
T KOG4340|consen 153 LLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPEL-G--------IGMTTE 222 (459)
T ss_pred eeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCcc-C--------ccceec
Confidence 455667777777777665432 335555433 34456677777777777766665422110 0 000000
Q ss_pred HHHHHHHhhhhcCCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCCHHHHHHHHHHHHhcCCHHHH
Q 038542 232 GREYFDSMKNDFGIIPKI-------EHYGCMVDMLCRSGRVKEAHEFIQKMPI----EANPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~----~p~~~~~~~li~~~~~~g~~~~a 300 (475)
+.. .+.+ | .|-. +.+|.-...+.+.|+++.|.+-+..||- ..|++|...+.-. -..+++-.+
T Consensus 223 giD-vrsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g 295 (459)
T KOG4340|consen 223 GID-VRSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEG 295 (459)
T ss_pred cCc-hhcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCcccc
Confidence 000 0000 0 0011 1223333345678888888888888832 2366776654322 123456666
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
.+-+.-+++.+|-.+.++..++-.|++..-++-|..++.+
T Consensus 296 ~~KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 296 FEKLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 6667777788887778888888888888888888877643
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.73 E-value=6e-05 Score=67.53 Aligned_cols=289 Identities=11% Similarity=0.047 Sum_probs=185.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHH---HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHhcc
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMI---GGYARLGLSTDAIDLFRQMQISGVCPDEITMV-TVLSACTDL 125 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~-~ll~~~~~~ 125 (475)
-|...+...| ++.+|+.-|....+-|+..|-++. ..|...|+..-|+.=+.+..+ ++||-..-. .-...+.+.
T Consensus 43 ElGk~lla~~-Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 43 ELGKELLARG-QLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHhh-hHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhhhhc
Confidence 3444444456 888888888877776666666654 567778888888888887776 467754321 122346778
Q ss_pred CChHHHHHHHHHHHHcCCCCC--ccH------------HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 038542 126 GALEVGKWVESFIEKQMVNRS--VGL------------CNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGL 188 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~--~~~------------~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 188 (475)
|.++.|..=|+.+++.....+ ..+ ....+..+.-.||...|+.....+.+ -|+..+..-..+|
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~ 199 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCY 199 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHH
Confidence 888888888888877643211 111 12233445566788888777776653 2666677777788
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhH----HHHH---H-----
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH----YGCM---V----- 256 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~----~~~l---i----- 256 (475)
...|.+..|+.=++..-+.. ..+..++..+-..+...|+.+.++...++-. .+.||-.. |..| +
T Consensus 200 i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~K~les 275 (504)
T KOG0624|consen 200 IAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVVKSLES 275 (504)
T ss_pred HhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHHHHHHH
Confidence 88888888887777665542 3344555566667777788777777666655 33454322 1111 1
Q ss_pred -HHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc
Q 038542 257 -DMLCRSGRVKEAHEFIQKM-PIEAN-----PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 257 -~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 329 (475)
....+.+++.++.+-.+.. ...|. ...+..+-..+...+++.+|++...++++.+|++..++.--..+|.-..
T Consensus 276 ~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE 355 (504)
T KOG0624|consen 276 AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDE 355 (504)
T ss_pred HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhH
Confidence 1123455666666555544 33443 1223344455667788888888888888888888888888888888888
Q ss_pred ChhHHHHHHHHHHhCC
Q 038542 330 RWEKKTKIREVMDKRG 345 (475)
Q Consensus 330 ~~~~a~~~~~~m~~~~ 345 (475)
.+++|..-++...+.+
T Consensus 356 ~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 356 MYDDAIHDYEKALELN 371 (504)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 8888888887776543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.72 E-value=0.00017 Score=69.90 Aligned_cols=324 Identities=13% Similarity=0.189 Sum_probs=197.3
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC---------------CC------HHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE---------------GG------IELGRKVF 69 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g---------------g~------~~~A~~~f 69 (475)
..|.+|.+-|.+.|.+++|..++++.++. ..++.-+..+.+.|+... |+ ++....-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 36889999999999999999999998876 344445555666664432 01 22223333
Q ss_pred hccCC---------------CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC------HHHHHHHHHHHhccCCh
Q 038542 70 DEMSE---------------RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD------EITMVTVLSACTDLGAL 128 (475)
Q Consensus 70 ~~~~~---------------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~t~~~ll~~~~~~~~~ 128 (475)
+.+.. .++..|..-... ..|+..+-...|.+.... +.|- ...|..+.+.|-..|++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 33321 144455544433 356777888888888764 3332 23567778888899999
Q ss_pred HHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHhcCCHHHHHHHHHhcC---CC------------------ChhHHHHH
Q 038542 129 EVGKWVESFIEKQMVNRS---VGLCNALIDMFAKCGDVDKALKLFRSMN---GR------------------TIVSWTSV 184 (475)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~------------------~~~~~~~l 184 (475)
+.|+.+|++..+...+.- ..+|....++=.+..+++.|+++.+... .+ +...|...
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y 483 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMY 483 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHH
Confidence 999999999887654422 3456666677777788888888887643 11 22345555
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCC----------------------------------CCHH-HHHHHHHHH---hcC
Q 038542 185 IAGLAMHGRGLEAVALFEEMLEAGVP----------------------------------PDDV-AFVGLLSAC---SHC 226 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~~g~~----------------------------------p~~~-t~~~ll~~~---~~~ 226 (475)
+..--..|-++....+++++.+..+. |+.. .|+.-+.-+ ...
T Consensus 484 ~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg 563 (835)
T KOG2047|consen 484 ADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG 563 (835)
T ss_pred HHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence 55444556666666666665544322 2221 122222111 223
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH----HHcCCHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhcCCHH
Q 038542 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML----CRSGRVKEAHEFIQKM--PIEA--NPIIWRTLISACCARGELK 298 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~----~~~g~~~~A~~~~~~m--~~~p--~~~~~~~li~~~~~~g~~~ 298 (475)
..++.|..+|++..+ |.+|... ..+--+| -+-|....|..++++. ++++ -...|+..|.--...=.+.
T Consensus 564 ~klEraRdLFEqaL~--~Cpp~~a--KtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 564 TKLERARDLFEQALD--GCPPEHA--KTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred CCHHHHHHHHHHHHh--cCCHHHH--HHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 467788888888876 6665432 2222223 2457777788888877 3443 2356777776444433455
Q ss_pred HHHHHHHHHHhCCCCCCch--HHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 299 LAESITKRLIGNEPMHESN--YVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 299 ~a~~~~~~~~~~~p~~~~~--~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
....+++++++.-|++..- ..-...+-.+.|..+.|..++..-.+
T Consensus 640 ~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq 686 (835)
T KOG2047|consen 640 RTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQ 686 (835)
T ss_pred ccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhh
Confidence 5677788887776654332 23345566788999999999866544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.68 E-value=3.3e-08 Score=57.96 Aligned_cols=33 Identities=39% Similarity=0.560 Sum_probs=26.9
Q ss_pred CCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038542 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174 (475)
Q Consensus 142 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 174 (475)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888888774
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.9e-05 Score=83.17 Aligned_cols=295 Identities=15% Similarity=0.034 Sum_probs=186.5
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCC----C------C--hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----H
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSE----R------D--SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE----I 113 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~----~------~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~ 113 (475)
.....+...| ++++|..++....+ . . ......+...+...|++++|...+++....-...+. .
T Consensus 414 ~~a~~~~~~g-~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 492 (903)
T PRK04841 414 LQAWLAQSQH-RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV 492 (903)
T ss_pred HHHHHHHHCC-CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence 3344445566 88888877765421 1 1 112223344566789999999999887763111122 2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCC---C--CccHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----C
Q 038542 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVN---R--SVGLCNALIDMFAKCGDVDKALKLFRSMNG-------R----T 177 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---~--~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~ 177 (475)
..+.+...+...|+++.|...+.......-. + .......+...+...|+++.|...+++... + .
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 572 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH 572 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence 3344455567789999999888877643211 1 123445567778889999999888776432 1 1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH-
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAG--VPPD--DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY- 252 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~- 252 (475)
...+..+...+...|++++|...+.+..... ..+. ...+..+.......|+.++|...+.....-.........+
T Consensus 573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~ 652 (903)
T PRK04841 573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI 652 (903)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence 1234445556777899999999988875531 1122 3344456667778999999999888875421111111111
Q ss_pred ----HHHHHHHHHcCCHHHHHHHHHhCCC-C-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCc
Q 038542 253 ----GCMVDMLCRSGRVKEAHEFIQKMPI-E-ANP----IIWRTLISACCARGELKLAESITKRLIGNE------PMHES 316 (475)
Q Consensus 253 ----~~li~~~~~~g~~~~A~~~~~~m~~-~-p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------p~~~~ 316 (475)
...+..+...|+.+.|..++..... . ... ..+..+..++...|+.++|...++++.... +....
T Consensus 653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~ 732 (903)
T PRK04841 653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR 732 (903)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence 1122445568899999999877621 1 111 124556677888999999999999987542 11223
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+...+..+|.+.|+.++|...+.+..+..
T Consensus 733 ~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 733 NLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 56778889999999999999999887644
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.1e-06 Score=75.85 Aligned_cols=181 Identities=15% Similarity=0.064 Sum_probs=114.6
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCH-HHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TI---VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDD-VAFV 217 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~~ 217 (475)
....+..+...|.+.|++++|...|+++.. | +. .+|..+..+|.+.|++++|+..++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 344566667777778888888887776643 2 11 35666777777788888888888887764311 111 1344
Q ss_pred HHHHHHhcC--------CCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 038542 218 GLLSACSHC--------GLVDKGREYFDSMKNDFGIIPKI-EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLI 288 (475)
Q Consensus 218 ~ll~~~~~~--------g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li 288 (475)
.+..++... |+.++|.+.++.+.+. .|+. ..+..+.... . ..... ......+.
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~-~---~~~~~-----------~~~~~~~a 173 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD-Y---LRNRL-----------AGKELYVA 173 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH-H---HHHHH-----------HHHHHHHH
Confidence 444455443 5677777777777653 2322 2222111110 0 00000 00112455
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC---CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 289 SACCARGELKLAESITKRLIGNEPMH---ESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..+...|+++.|...++++++..|.+ +..+..++.+|...|++++|...++.+...
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67888999999999999999887654 467889999999999999999998887654
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.65 E-value=3.3e-05 Score=73.22 Aligned_cols=322 Identities=14% Similarity=0.083 Sum_probs=217.8
Q ss_pred HHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CC-hhHHHHHHHHHHHcCChh
Q 038542 18 KACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RD-SVSWSAMIGGYARLGLST 94 (475)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~-~~~~~~li~~~~~~g~~~ 94 (475)
.+....|+++.|...|...+... ++|...|+.-...|++.| ++++|++--.+..+ |+ ...|+-...++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~-~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLG-SYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHh-hHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHH
Confidence 35567799999999999988876 668888999999999998 99988876655544 32 457888888888899999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHhcc------------------------------------------------
Q 038542 95 DAIDLFRQMQISGVCP-DEITMVTVLSACTDL------------------------------------------------ 125 (475)
Q Consensus 95 ~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~------------------------------------------------ 125 (475)
+|+.-|.+-++. .| |...++.+..++...
T Consensus 88 eA~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~ 165 (539)
T KOG0548|consen 88 EAILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLY 165 (539)
T ss_pred HHHHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcc
Confidence 999999887764 33 344445555444111
Q ss_pred CChHHHHHHHHHHHH--------c-------CCCC------------C----------ccHHHHHHHHHHhcCCHHHHHH
Q 038542 126 GALEVGKWVESFIEK--------Q-------MVNR------------S----------VGLCNALIDMFAKCGDVDKALK 168 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~--------~-------~~~~------------~----------~~~~~~li~~y~~~g~~~~A~~ 168 (475)
.+.+...+.+..+.. . +..| + ..-...+.++.-+..+++.|.+
T Consensus 166 l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q 245 (539)
T KOG0548|consen 166 LNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQ 245 (539)
T ss_pred cccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHH
Confidence 000001111111110 0 0111 0 1125667788888888888888
Q ss_pred HHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 169 LFRSMNGR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV-------AFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 169 ~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
-+.....- ++.-++....+|...|.+.+....-....+.|- -... .+..+..+|.+.++.+.|..+|...
T Consensus 246 ~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~ka 324 (539)
T KOG0548|consen 246 HYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKA 324 (539)
T ss_pred HHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHH
Confidence 87765533 444456666678887777776666666555442 1111 2222334566667788888887776
Q ss_pred hhhcCCCCChhHH-------------------------HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 240 KNDFGIIPKIEHY-------------------------GCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 240 ~~~~~~~p~~~~~-------------------------~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
... ...|+...- ..-...+.+.|++..|.+.|.++ ...| |...|..-.-+|.
T Consensus 325 Lte-~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~ 403 (539)
T KOG0548|consen 325 LTE-HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYL 403 (539)
T ss_pred hhh-hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Confidence 654 333332211 11134467789999999999988 4445 7888999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+.|.+..|..-.+..++++|+....|..-+.++....+|++|.+.|.+-.+..
T Consensus 404 kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 404 KLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999988889888888888899999999998776543
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.65 E-value=0.00041 Score=68.81 Aligned_cols=204 Identities=15% Similarity=0.110 Sum_probs=129.3
Q ss_pred cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHH
Q 038542 40 QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD-EITM 115 (475)
Q Consensus 40 g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~ 115 (475)
.+.-|..+|..|.-...++| +++.+-+.|++... .....|+.+...|...|....|+.+++.-....-.|+ ...+
T Consensus 318 ~~qnd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 318 KFQNDAAIFDHLTFALSRCG-QFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 45668888988888889998 99999999988764 2566899999999999999999999887665432243 3344
Q ss_pred HHHHHHHh-ccCChHHHHHHHHHHHHc--CC--CCCccHHHHHHHHHHhc----C-------CHHHHHHHHHhcCCC---
Q 038542 116 VTVLSACT-DLGALEVGKWVESFIEKQ--MV--NRSVGLCNALIDMFAKC----G-------DVDKALKLFRSMNGR--- 176 (475)
Q Consensus 116 ~~ll~~~~-~~~~~~~a~~~~~~~~~~--~~--~~~~~~~~~li~~y~~~----g-------~~~~A~~~~~~~~~~--- 176 (475)
-..-..|. +.+.++++..+-.++++. +. ......|..+.-+|... . ...++...+++..+.
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~ 476 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT 476 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33334443 566777777776666652 11 11223344444444332 1 123455555555322
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 244 (475)
|...---+.--|+..++.+.|.+..++..+.+-.-+...|..|.-.++..+++.+|+.+.+.....+|
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~ 544 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFG 544 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Confidence 22222223334666777778887777777765556666777676677777777777777766665544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.5e-08 Score=57.39 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=18.0
Q ss_pred cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhcc
Q 038542 40 QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEM 72 (475)
Q Consensus 40 g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~ 72 (475)
|+.||..+||+||++|++.| ++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G-~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAG-RVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCC-CHHHHHHHHHhC
Confidence 45555555555555555555 555555555555
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.62 E-value=0.00021 Score=64.17 Aligned_cols=256 Identities=12% Similarity=0.061 Sum_probs=183.5
Q ss_pred HHHHhCCCCHHHHHHHHhccCC--CChh-HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----------------H
Q 038542 53 HMYGSCEGGIELGRKVFDEMSE--RDSV-SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE----------------I 113 (475)
Q Consensus 53 ~~~~~~gg~~~~A~~~f~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----------------~ 113 (475)
..|...| +...|+.-|++..+ ||-. .--.-...+.++|.+++|..=|+...+.. |+. .
T Consensus 80 T~yLAmG-ksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~~~~eaqskl~~~~e~~ 156 (504)
T KOG0624|consen 80 TVYLAMG-KSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNGLVLEAQSKLALIQEHW 156 (504)
T ss_pred HHHhhhc-CCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcchhHHHHHHHHhHHHHH
Confidence 3455566 66666666666554 3311 11222356789999999999999998763 321 1
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhc---CCCChhHHHHHHHHHHH
Q 038542 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM---NGRTIVSWTSVIAGLAM 190 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~ 190 (475)
.....+..+...|+...+......+++.. +.|...+..-..+|...|++.+|+.-++.. .+.+..++--+-..+..
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~ 235 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYT 235 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHh
Confidence 12234455667889999999999998874 458888999999999999999998776654 45567777777788889
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHH----HHHH---------HHHHhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPDDVA----FVGL---------LSACSHCGLVDKGREYFDSMKNDFGIIPK-----IEHY 252 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~~~t----~~~l---------l~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~ 252 (475)
.|+.+.++...++..+ +.||... |..| +......+++.++..-.+...+. .|. ...+
T Consensus 236 vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGF 310 (504)
T ss_pred hhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeee
Confidence 9999999999999888 4677532 2111 11223456677777666666542 333 2334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
..+-.++...|++.+|.+...+. .+.|| +.++.--..+|.....++.|+.-++.+.+.++++..+
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~ 377 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRA 377 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHH
Confidence 45666778889999999888777 66674 7888888889999999999999999999999887543
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.3e-06 Score=82.53 Aligned_cols=227 Identities=17% Similarity=0.159 Sum_probs=174.4
Q ss_pred CCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038542 142 MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221 (475)
Q Consensus 142 ~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 221 (475)
+++|-...-..+...+.++|-...|..+|++. ..|.-.|..|+..|+..+|..+..+-.+ -+||+..|..+.+
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhh
Confidence 35666667778899999999999999999985 4788899999999999999999988877 4899999999999
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 299 (475)
..-...-+++|.++.+..... .-..+.....+.++++++.+.|+.- .+.| -..+|-.+..+..+.++++.
T Consensus 466 v~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~ 537 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQA 537 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHH
Confidence 988888889999988776542 1122222334478899999998865 4445 57789888888899999999
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHH
Q 038542 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYE 379 (475)
Q Consensus 300 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (475)
|.+.|......+|++...|+.+.-+|.+.|+-.+|...+.+..+-+.. +|-.|.|-.+ ++-+ -++.+++.+
T Consensus 538 av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENyml--vsvd--vge~eda~~ 608 (777)
T KOG1128|consen 538 AVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYML--VSVD--VGEFEDAIK 608 (777)
T ss_pred HHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhh--hhhh--cccHHHHHH
Confidence 999999999999999999999999999999999999999888876632 3444444322 2222 345556665
Q ss_pred HHHHHHHHHHHcCc
Q 038542 380 MLDEMGRKMKKAGY 393 (475)
Q Consensus 380 ~l~~l~~~m~~~g~ 393 (475)
...++. .|+..+-
T Consensus 609 A~~rll-~~~~~~~ 621 (777)
T KOG1128|consen 609 AYHRLL-DLRKKYK 621 (777)
T ss_pred HHHHHH-Hhhhhcc
Confidence 555543 3444433
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.61 E-value=0.00026 Score=68.04 Aligned_cols=313 Identities=13% Similarity=0.113 Sum_probs=167.8
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChh--HHHHHHHHHHHcCC
Q 038542 15 FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSV--SWSAMIGGYARLGL 92 (475)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~--~~~~li~~~~~~g~ 92 (475)
+=+.-+...+++++|.+....++..+ +.+......-+-+..+.+ .+++|+.+.+.-....+. -+-.-..+.-+.+.
T Consensus 17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~-ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk 94 (652)
T KOG2376|consen 17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLD-KYEDALKLIKKNGALLVINSFFFEKAYCEYRLNK 94 (652)
T ss_pred HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhh-HHHHHHHHHHhcchhhhcchhhHHHHHHHHHccc
Confidence 34566778899999999999998876 566666666666777878 999999777654431111 11122344457888
Q ss_pred hhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC-c-----------------------
Q 038542 93 STDAIDLFRQMQISGVCPDE-ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS-V----------------------- 147 (475)
Q Consensus 93 ~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~----------------------- 147 (475)
.++|+..+. |..++. .+...-...|-+.+++++|..+|+.+.+++.+.. .
T Consensus 95 ~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~ 169 (652)
T KOG2376|consen 95 LDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPE 169 (652)
T ss_pred HHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccC
Confidence 999998887 344433 3555566668899999999999999877643211 0
Q ss_pred ---cHHHHH---HHHHHhcCCHHHHHHHHHhc--------CCCC-----hh-----HHHHHHHHHHHcCChHHHHHHHHH
Q 038542 148 ---GLCNAL---IDMFAKCGDVDKALKLFRSM--------NGRT-----IV-----SWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 148 ---~~~~~l---i~~y~~~g~~~~A~~~~~~~--------~~~~-----~~-----~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
.+|..+ .-.+...|++.+|+++++.. .+.| +. .---|.-.+-..|+.++|..++..
T Consensus 170 v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~ 249 (652)
T KOG2376|consen 170 VPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVD 249 (652)
T ss_pred CCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 111111 12234445555555555544 1111 00 111122233445555555555555
Q ss_pred HHHcCCCCCHHHH----HHHHHHHhcCCCHHH--HHHHHHHhhhhc----------CCCCChhHHHHHHHHHHHcCCHHH
Q 038542 204 MLEAGVPPDDVAF----VGLLSACSHCGLVDK--GREYFDSMKNDF----------GIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 204 m~~~g~~p~~~t~----~~ll~~~~~~g~~~~--a~~~~~~m~~~~----------~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
..... ++|.... |.|+ +...-.++-. ++..++...... .-.....--++++.+| .+..+.
T Consensus 250 ~i~~~-~~D~~~~Av~~NNLv-a~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--tnk~~q 325 (652)
T KOG2376|consen 250 IIKRN-PADEPSLAVAVNNLV-ALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--TNKMDQ 325 (652)
T ss_pred HHHhc-CCCchHHHHHhcchh-hhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhHHH
Confidence 55543 3332111 1111 1111111111 111111111000 0000000011122222 334455
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHH-hc-CCHHHHHHHHHHHHhCCCCC-CchHHHHHHHHHhccChhHHHHHHH
Q 038542 268 AHEFIQKMP-IEANPIIWRTLISACC-AR-GELKLAESITKRLIGNEPMH-ESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 268 A~~~~~~m~-~~p~~~~~~~li~~~~-~~-g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
+.++-...+ ..|. ..+.+++..+. .. .....+.+++....+..|.+ .......+......|+|+.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 326 VRELSASLPGMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred HHHHHHhCCccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 666655553 3343 34445554432 22 24778888888888888876 3345566778899999999999998
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.7e-06 Score=71.96 Aligned_cols=118 Identities=6% Similarity=0.047 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHH
Q 038542 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISAC-CARGE--LKLA 300 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~-~~~g~--~~~a 300 (475)
.++.+++...++...+ .-+.+...|..+...|...|++++|...|++. ...| +...+..+..++ ...|+ .++|
T Consensus 52 ~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A 129 (198)
T PRK10370 52 QQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT 129 (198)
T ss_pred chhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence 5666677666766665 34567778888888888888888888888877 4445 677777777764 56666 4888
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.++++++++.+|.+..++..+...+...|++++|...++++.+..
T Consensus 130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 899999999888888888888888888999999999988887643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.2e-06 Score=70.00 Aligned_cols=121 Identities=13% Similarity=-0.011 Sum_probs=86.6
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038542 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI 277 (475)
Q Consensus 199 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 277 (475)
.+|++..+ +.|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|+.. ..
T Consensus 14 ~~~~~al~--~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLS--VDPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHH--cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44555554 23543 44566677778888888888887765 33446677777888888888888888888877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 278 EA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 278 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
.| +...|..+..++...|+.++|...++++++..|+++..+.....+.
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 44 6777778888888888888888888888888888877776655544
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00021 Score=69.37 Aligned_cols=192 Identities=13% Similarity=0.069 Sum_probs=90.3
Q ss_pred HHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHH
Q 038542 20 CAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 96 (475)
+...|+-++|.......++.. ..+.+.|..+. .+.|...++++|.+.|..... .|...|.-+.-.-++.|+++..
T Consensus 51 L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~g-l~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 51 LNCLGKKEEAYELVRLGLRND-LKSHVCWHVLG-LLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhcccchHHHHHHHHHHhccC-cccchhHHHHH-HHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhH
Confidence 344566777776666655542 22333444333 333333377777777766532 2445555555555555555555
Q ss_pred HHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCC-CCCccHHHHHH------HHHHhcCCHHHHHH
Q 038542 97 IDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMV-NRSVGLCNALI------DMFAKCGDVDKALK 168 (475)
Q Consensus 97 ~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li------~~y~~~g~~~~A~~ 168 (475)
...-.+..+. .| ....|.....+.--.|+...|..+.+...+... .|+...+.-.. ....+.|.+++|.+
T Consensus 129 ~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 129 LETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 5555555443 23 233444444455555555555555555554431 23332222111 22334455555555
Q ss_pred HHHhcCCC--Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038542 169 LFRSMNGR--TIV-SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217 (475)
Q Consensus 169 ~~~~~~~~--~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 217 (475)
.+..-... |-. .-.+....+.+.++.++|..++..+... .||..-|.
T Consensus 207 ~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy 256 (700)
T KOG1156|consen 207 HLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYY 256 (700)
T ss_pred HHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHH
Confidence 54443322 111 1122333445555555555555555553 34444333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.6e-06 Score=70.35 Aligned_cols=155 Identities=10% Similarity=0.097 Sum_probs=114.2
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 233 (475)
+-.|.+.|+++.+....+.+..+. ..|...++.++++..++...+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777788777655544332221 01223566677887787777764 667788888889999999999999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHH-HHHcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDM-LCRSGR--VKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~--~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
..|+...+ -.+.+...+..+..+ +.+.|+ .++|.+++++. ...| +...+..+...+...|++++|...+++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998876 334466777777776 467777 58999999988 4455 67888888999999999999999999999
Q ss_pred hCCCCCCchHH
Q 038542 309 GNEPMHESNYV 319 (475)
Q Consensus 309 ~~~p~~~~~~~ 319 (475)
+..|++..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99877655443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.51 E-value=6.9e-05 Score=69.60 Aligned_cols=217 Identities=14% Similarity=0.087 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE-ITMVTVLSACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
++..+-..+...++.++|+.+..++.+. .|+. .+|+.--..+...+ .++++...++.+++...+ +..+|+...-+
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~ 115 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWL 115 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHH
Confidence 4555555666667777777777777763 3433 34443333444444 456666666666655322 33445444333
Q ss_pred HHhcCCH--HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 038542 157 FAKCGDV--DKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231 (475)
Q Consensus 157 y~~~g~~--~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 231 (475)
+.+.|+. +++..+++++.+ +|..+|+...-++...|+++++++.+.++.+.+. -|...|+.....+.+.+...
T Consensus 116 l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~-~N~sAW~~R~~vl~~~~~l~- 193 (320)
T PLN02789 116 AEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV-RNNSAWNQRYFVITRSPLLG- 193 (320)
T ss_pred HHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-CchhHHHHHHHHHHhccccc-
Confidence 4444432 344444444432 2445555555555555555555555555555432 22233333322222211000
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 038542 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR----GELKLAESITK 305 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~----g~~~~a~~~~~ 305 (475)
+ .....+++.++..++ ...| |...|+-+...+... ++..+|.+.+.
T Consensus 194 ------------~----------------~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~ 245 (320)
T PLN02789 194 ------------G----------------LEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCL 245 (320)
T ss_pred ------------c----------------ccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHH
Confidence 0 000123344444333 3344 566777777766663 34456777788
Q ss_pred HHHhCCCCCCchHHHHHHHHHhc
Q 038542 306 RLIGNEPMHESNYVLLSHIYAKL 328 (475)
Q Consensus 306 ~~~~~~p~~~~~~~~l~~~~~~~ 328 (475)
++...+|.++.+...|+..|+..
T Consensus 246 ~~~~~~~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 246 EVLSKDSNHVFALSDLLDLLCEG 268 (320)
T ss_pred HhhcccCCcHHHHHHHHHHHHhh
Confidence 87777788877888888888763
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.2e-05 Score=77.04 Aligned_cols=212 Identities=12% Similarity=-0.023 Sum_probs=164.2
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCC
Q 038542 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGR 193 (475)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~ 193 (475)
..+...+.+.|-...|..+++.+. .+.-.|.+|...|+..+|..+..+-. .+|...|..+.+......-
T Consensus 402 ~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHH
Confidence 345566778888888888888664 45567889999999999998877654 3577888888888777777
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 038542 194 GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273 (475)
Q Consensus 194 ~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (475)
+++|.++++..... .-..+.....+.++++++.+.|+.-.+- -+-...+|-.+.-+..+.+++..|.+.|.
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 88999988875432 1112222233478899999988876652 23345678888888889999999998888
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 274 KM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 274 ~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.. ...| +...||++-.+|.+.++-.+|...++++.+.+-.+...|...+-.-.+.|.|++|.+.+.++....
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 76 6667 567899999999999999999999999999887777777777777889999999999999987643
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4e-06 Score=68.46 Aligned_cols=95 Identities=7% Similarity=-0.165 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 328 (475)
.+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...++++.+.+|.++..+..+..++...
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence 4666788899999999999999988 5555 7889999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHhCC
Q 038542 329 LRWEKKTKIREVMDKRG 345 (475)
Q Consensus 329 g~~~~a~~~~~~m~~~~ 345 (475)
|++++|...++...+..
T Consensus 106 g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 106 GEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999987643
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.1e-05 Score=80.35 Aligned_cols=208 Identities=13% Similarity=0.081 Sum_probs=145.4
Q ss_pred HHHHHHHHHhccCChHHH-HHHHHHHHHcCCCCCccHHHHHHHHHHhcCC----HHHHHHHHHhcCCCChhHHHHHHHHH
Q 038542 114 TMVTVLSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALIDMFAKCGD----VDKALKLFRSMNGRTIVSWTSVIAGL 188 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----~~~A~~~~~~~~~~~~~~~~~li~~~ 188 (475)
....+=.+.+..|.-+++ .+++.++.+ ++...++... +.++..+.+... .++..+-.|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYP-HTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhcc-ccHHHHHHHHHHH
Confidence 333333446677766655 566665542 2332222222 223333333332 2577788888999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
.+.|.+++|..+++...+. .|| ......+..++.+.+++++|....++... .-+-+......+..++.+.|++++
T Consensus 97 ~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~~~ 172 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQSEQ 172 (694)
T ss_pred HHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcchHH
Confidence 9999999999999999984 566 45677788899999999999999999886 445566778888899999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
|..+|++. .-.| +..+|..+..++...|+.++|...|+++.+...+-...|+.++ ++...-...++.+.-.
T Consensus 173 A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 245 (694)
T PRK15179 173 ADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNADLAALRRLGVE 245 (694)
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHHHHHHHHcCcc
Confidence 99999998 2233 4788999999999999999999999999887644334444332 2333334455555433
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.3e-05 Score=78.32 Aligned_cols=231 Identities=11% Similarity=0.130 Sum_probs=172.6
Q ss_pred CCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-----CccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-C-hhH
Q 038542 109 CPD-EITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-----SVGLCNALIDMFAKCGDVDKALKLFRSMNGR-T-IVS 180 (475)
Q Consensus 109 ~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-~-~~~ 180 (475)
.|| ...|-.-+.-..+.++++.|+++.+++++. +.+ -..+|.+++++-..-|.-+...++|++..+- | ...
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V 1532 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTV 1532 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHH
Confidence 454 456777778888899999999999888764 211 2347888888888888888899999988753 3 356
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (475)
|..|...|.+.++.++|.++|+.|.+. .......|...+..+.+.++-+.|..++.+..+...-.-......-.+++-.
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHh
Confidence 888999999999999999999999876 3456677888889999999999999999888763111113444556667778
Q ss_pred HcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCc-hHHHHHHHHHhccChhHHH
Q 038542 261 RSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNE--PMHES-NYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 261 ~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--p~~~~-~~~~l~~~~~~~g~~~~a~ 335 (475)
+.|+.+.+..+|+.. ..+.-...|+.+++.-.++|+.+.+..+|+++..+. |.... .|.-++..--+.|+-+.++
T Consensus 1612 k~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE 1691 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVE 1691 (1710)
T ss_pred hcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHH
Confidence 899999999999887 222256789999999999999999999999998876 33333 3445555445556666665
Q ss_pred HHHHHH
Q 038542 336 KIREVM 341 (475)
Q Consensus 336 ~~~~~m 341 (475)
.+-.+.
T Consensus 1692 ~VKarA 1697 (1710)
T KOG1070|consen 1692 YVKARA 1697 (1710)
T ss_pred HHHHHH
Confidence 554443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.8e-05 Score=73.99 Aligned_cols=164 Identities=17% Similarity=0.203 Sum_probs=73.9
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
......+..|..+++-+..... ....|..+.+-|+..|+++-|+++|-+.. .++-.|..|.+.|+++.|.++-
T Consensus 742 ai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~-----~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 742 AIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD-----LFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred HhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc-----hhHHHHHHHhccccHHHHHHHH
Confidence 3444455555555555544321 22234445555666666666666655432 2344455566666666665554
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCH
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANP 281 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~ 281 (475)
.+.. |.......|.+-..-.-..|++.+|.+++-.+.. |+. -|.+|-+.|..++..++..+-.-..-.
T Consensus 815 ~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~~-----p~~-----aiqmydk~~~~ddmirlv~k~h~d~l~ 882 (1636)
T KOG3616|consen 815 EECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE-----PDK-----AIQMYDKHGLDDDMIRLVEKHHGDHLH 882 (1636)
T ss_pred HHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC-----chH-----HHHHHHhhCcchHHHHHHHHhChhhhh
Confidence 4332 2222233444444444445555555554433221 221 344555555555555555443101112
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHH
Q 038542 282 IIWRTLISACCARGELKLAESIT 304 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~ 304 (475)
.|...+..-+-..|+.+.|+.-|
T Consensus 883 dt~~~f~~e~e~~g~lkaae~~f 905 (1636)
T KOG3616|consen 883 DTHKHFAKELEAEGDLKAAEEHF 905 (1636)
T ss_pred HHHHHHHHHHHhccChhHHHHHH
Confidence 23333333444444444444443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.47 E-value=1.9e-05 Score=70.74 Aligned_cols=180 Identities=14% Similarity=0.035 Sum_probs=126.7
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc---cHHHHHHHHHHhcCCHHHHHHHHHhcCCC---Ch---hHH
Q 038542 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV---GLCNALIDMFAKCGDVDKALKLFRSMNGR---TI---VSW 181 (475)
Q Consensus 111 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~---~~~ 181 (475)
....+-.....+...|+++.|...++.+.+.... +. .++..+..+|.+.|++++|...|+++.+. +. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPF-SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 4556777788899999999999999999876422 22 46677889999999999999999988532 22 245
Q ss_pred HHHHHHHHHc--------CChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH
Q 038542 182 TSVIAGLAMH--------GRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252 (475)
Q Consensus 182 ~~li~~~~~~--------g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 252 (475)
..+..++.+. |+.++|.+.|+.+... .|+.. ....+..... . ..... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~------~~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----L------RNRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----H------HHHHH---------HHH
Confidence 5555666654 7889999999999875 34432 2222211100 0 00000 112
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
..+...|.+.|++++|...+++. +-.| ....|..+..++...|++++|...++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 34667788999999999988887 3233 356888999999999999999999888876655
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.0012 Score=63.57 Aligned_cols=143 Identities=17% Similarity=0.186 Sum_probs=99.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHH--------HhhhhcCCCCChhHHHHHHHHHHHc
Q 038542 193 RGLEAVALFEEMLEAGVPPDD--VAFVGLLSACSHCGLVDKGREYFD--------SMKNDFGIIPKIEHYGCMVDMLCRS 262 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~--------~m~~~~~~~p~~~~~~~li~~~~~~ 262 (475)
.+.+|.+++...-+. .|.. ......+......|+++.|..++. .+.+. +..| .+...++..+.+.
T Consensus 356 ~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~-~~~P--~~V~aiv~l~~~~ 430 (652)
T KOG2376|consen 356 KHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA-KHLP--GTVGAIVALYYKI 430 (652)
T ss_pred HHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh-ccCh--hHHHHHHHHHHhc
Confidence 466777777766554 3333 344556667788999999999998 44442 4444 4556777888888
Q ss_pred CCHHHHHHHHHhC--------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhH
Q 038542 263 GRVKEAHEFIQKM--------PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333 (475)
Q Consensus 263 g~~~~A~~~~~~m--------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 333 (475)
++-+-|-.++.+. .-.+ -..+|.-+..--.++|+.++|...++++.+.+|.+..+...++.+|++. +.+.
T Consensus 431 ~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~ek 509 (652)
T KOG2376|consen 431 KDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEK 509 (652)
T ss_pred cCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHH
Confidence 7766666666554 2122 1233444444556789999999999999999999999999999999887 6777
Q ss_pred HHHHHHHH
Q 038542 334 KTKIREVM 341 (475)
Q Consensus 334 a~~~~~~m 341 (475)
|..+-+.+
T Consensus 510 a~~l~k~L 517 (652)
T KOG2376|consen 510 AESLSKKL 517 (652)
T ss_pred HHHHhhcC
Confidence 77665443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=6e-05 Score=77.98 Aligned_cols=233 Identities=8% Similarity=-0.004 Sum_probs=122.7
Q ss_pred ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038542 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120 (475)
Q Consensus 44 ~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 120 (475)
+...+..|+..|...+ ++++|.++.+...+ | ....|-.+...+.+.++..++..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~-~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSEN-LTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 3345566666665555 66666666554332 2 222333333345555554444333 1 122
Q ss_pred HHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHH
Q 038542 121 ACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEA 197 (475)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 197 (475)
......++.....++..+...+ .+..++..|..+|-+.|+.++|..+++++.+ .|+.+.|.+.-.|+.. +.++|
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 2222222323333333333321 2333555566666666666666666666543 2455566666666666 66666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCC
Q 038542 198 VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPI 277 (475)
Q Consensus 198 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 277 (475)
.+++.+.... +...+++..+..+|..+.. ..+-+...+..+.... ....+.
T Consensus 169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki------------~~~~~~ 219 (906)
T PRK14720 169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKV------------LGHREF 219 (906)
T ss_pred HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHH------------Hhhhcc
Confidence 6666555442 3444455556666666554 2222222222111111 111122
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 278 EANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
.--+.++..+-..|...++++++..+++.+++.+|.|..+..-++..|.
T Consensus 220 ~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 220 TRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred chhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 3345566667777888888899999999999988888777777777776
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.3e-05 Score=66.19 Aligned_cols=152 Identities=15% Similarity=0.119 Sum_probs=88.5
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (475)
+-..+...|+-+.+..+....... .+.|.......+....+.|++.+|...+.+... .-++|...|+.+.-+|.+.|
T Consensus 72 ~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 72 LATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHHcc
Confidence 444555556665555555543332 122333333455555666666666666666654 55556666666666666666
Q ss_pred CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHH
Q 038542 264 RVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 264 ~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
++++|..-|.+. .+.| ++...+.|.-.+.-.|+.+.|..++.......+.+...-..|..+....|++++|..+-
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 666666665555 3333 34555666666666666666666666666666656666666666666666666665543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00067 Score=73.68 Aligned_cols=331 Identities=9% Similarity=0.022 Sum_probs=201.8
Q ss_pred HhCCCCHHHHHHHHhccCC----CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC------CCCHH--HHHHHHHHHh
Q 038542 56 GSCEGGIELGRKVFDEMSE----RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV------CPDEI--TMVTVLSACT 123 (475)
Q Consensus 56 ~~~gg~~~~A~~~f~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~------~p~~~--t~~~ll~~~~ 123 (475)
...| +++.+..+++.++. .+..........+...|++++|..++......-- .|... ....+...+.
T Consensus 385 ~~~g-~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 385 FNQG-ELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HhcC-ChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 3445 78888888777742 1333334445566778999999999988754310 11111 1122223456
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCc----cHHHHHHHHHHhcCCHHHHHHHHHhcCC-------CC--hhHHHHHHHHHHH
Q 038542 124 DLGALEVGKWVESFIEKQMVNRSV----GLCNALIDMFAKCGDVDKALKLFRSMNG-------RT--IVSWTSVIAGLAM 190 (475)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~~--~~~~~~li~~~~~ 190 (475)
..|+++.|...++.....-...+. ...+.+...+...|++++|...+.+... +. ..++..+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988764212121 2345666778889999999999887642 11 2345556677889
Q ss_pred cCChHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-CCC--ChhHHHHHHHHHH
Q 038542 191 HGRGLEAVALFEEMLEA----GVP--P-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG-IIP--KIEHYGCMVDMLC 260 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~p--~~~~~~~li~~~~ 260 (475)
.|++++|...+++.... +.. | ....+..+...+...|++++|...+........ ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999998887552 211 1 223444556667778999999999887754211 112 2334445666778
Q ss_pred HcCCHHHHHHHHHhC----CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch----HHHHHHHHHh
Q 038542 261 RSGRVKEAHEFIQKM----PIEANPIIWR-----TLISACCARGELKLAESITKRLIGNEPMHESN----YVLLSHIYAK 327 (475)
Q Consensus 261 ~~g~~~~A~~~~~~m----~~~p~~~~~~-----~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~----~~~l~~~~~~ 327 (475)
..|+.++|.+.++.. ........+. ..+..+...|+.+.|...+.......+..... +..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999999888776 1111111111 12234456789999999887765433222211 3567788999
Q ss_pred ccChhHHHHHHHHHHhCC----CccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcc
Q 038542 328 LLRWEKKTKIREVMDKRG----MKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394 (475)
Q Consensus 328 ~g~~~~a~~~~~~m~~~~----~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 394 (475)
.|++++|...++...... ........... ........++..++...+.+.++.-...|+.
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~-------la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLIL-------LNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 999999999998876532 11100000000 0011223455677777777777666666663
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00036 Score=64.88 Aligned_cols=209 Identities=10% Similarity=0.016 Sum_probs=141.9
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhccCCC---ChhHHHHHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038542 47 VQNTLVHMYGSCEGGIELGRKVFDEMSER---DSVSWSAMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122 (475)
Q Consensus 47 ~~~~li~~~~~~gg~~~~A~~~f~~~~~~---~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 122 (475)
+++.+-..+...+ +.++|+.+.+...+. +..+|+.-..++...| ++++++..++++.... +-+..+|+..-..+
T Consensus 39 a~~~~ra~l~~~e-~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l 116 (320)
T PLN02789 39 AMDYFRAVYASDE-RSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLA 116 (320)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHH
Confidence 4555666666666 999999999988753 5567877777777777 6799999999998864 22444565544445
Q ss_pred hccCC--hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHc---CCh
Q 038542 123 TDLGA--LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMH---GRG 194 (475)
Q Consensus 123 ~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~---g~~ 194 (475)
.+.+. .+.+..+.+.+++... -+..+|+...-++.+.|++++|++.++++.+ .|..+|+.....+.+. |..
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~ 195 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGL 195 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccc
Confidence 55555 3667888888887653 4778888888889999999999999999875 3667888877666554 222
Q ss_pred ----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC----CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 195 ----LEAVALFEEMLEAGVPPDDVAFVGLLSACSHC----GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 195 ----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
+++++...++.... +-|...|+-+...+... +...+|..++..... .-..+......|++.|+.
T Consensus 196 ~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 196 EAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--KDSNHVFALSDLLDLLCE 267 (320)
T ss_pred cccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--ccCCcHHHHHHHHHHHHh
Confidence 35666666666642 34556666666666552 334556666666543 123345556666777664
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00011 Score=64.55 Aligned_cols=275 Identities=12% Similarity=0.035 Sum_probs=152.4
Q ss_pred CHHHHHHHHhccC-CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHH
Q 038542 61 GIELGRKVFDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIE 139 (475)
Q Consensus 61 ~~~~A~~~f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 139 (475)
++..++.+.++.+ +.+..+.+...-...+.|++++|++-|+...+-+---....|+..+.. -+.++++.|.....+++
T Consensus 127 Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 127 DLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEII 205 (459)
T ss_pred cCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHH
Confidence 4444555555555 234555555555666789999999999888775433345567655544 46788889999888888
Q ss_pred HcCCCCCc----------------------------cHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHH
Q 038542 140 KQMVNRSV----------------------------GLCNALIDMFAKCGDVDKALKLFRSMNGR-----TIVSWTSVIA 186 (475)
Q Consensus 140 ~~~~~~~~----------------------------~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~ 186 (475)
++|+...+ ..+|.-...+.+.|+++.|.+.+-.|+.+ |.+|...+.-
T Consensus 206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al 285 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQAL 285 (459)
T ss_pred HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHH
Confidence 87653221 11222233466778888999988888754 5666554432
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC-CCChhHHHHHHHHHH-HcCC
Q 038542 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI-IPKIEHYGCMVDMLC-RSGR 264 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~-~~g~ 264 (475)
. -..+++.+..+-+.-+.+.+ +-...||..++-.||+..-++.|-.++.+-..- .. -.+...|+. ++++. ..-.
T Consensus 286 ~-n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~L-LdaLIt~qT~ 361 (459)
T KOG4340|consen 286 M-NMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDL-LDALITCQTA 361 (459)
T ss_pred h-cccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHH-HHHHHhCCCC
Confidence 2 12455555566566666653 344578888888899888888888877553321 11 112333333 33333 3445
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHH-HhcCCHH----HHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 038542 265 VKEAHEFIQKMPIEANPIIWRTLISAC-CARGELK----LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 265 ~~~A~~~~~~m~~~p~~~~~~~li~~~-~~~g~~~----~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
.++|.+-++.+.-......-..-+..- .+..+-+ .+.+-+++.+++- ..+...-...|.+..++..++++|+
T Consensus 362 pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVlMa~AkiyW~~~Dy~~vEk~Fr 438 (459)
T KOG4340|consen 362 PEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVLMAQAKIYWNLEDYPMVEKIFR 438 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHhhccccccHHHHHHHH
Confidence 666666555441000000111111111 1111111 1222222222222 1123344566778888888888887
Q ss_pred HHHh
Q 038542 340 VMDK 343 (475)
Q Consensus 340 ~m~~ 343 (475)
.-.+
T Consensus 439 ~Sve 442 (459)
T KOG4340|consen 439 KSVE 442 (459)
T ss_pred HHHh
Confidence 6543
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00043 Score=70.51 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=114.8
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
...|+.+..+-.+.|...+|++-|-+ ..|+..|..+++.+++.|.+++-..++...++. .-+|... +.||-
T Consensus 1104 p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~ 1174 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIF 1174 (1666)
T ss_pred hHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHH
Confidence 35799999999999999999887764 346778999999999999999999998887775 6666654 57899
Q ss_pred HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHH
Q 038542 258 MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKI 337 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~ 337 (475)
+|++.+++.+.++++. .||..-...+.+-|...|.++.|.-++.. .+.|..|...+...|++..|...
T Consensus 1175 AyAkt~rl~elE~fi~----gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~ 1242 (1666)
T KOG0985|consen 1175 AYAKTNRLTELEEFIA----GPNVANIQQVGDRCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDA 1242 (1666)
T ss_pred HHHHhchHHHHHHHhc----CCCchhHHHHhHHHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999887764 47777778888889999999988888764 45677777788888888777655
Q ss_pred HHH
Q 038542 338 REV 340 (475)
Q Consensus 338 ~~~ 340 (475)
-++
T Consensus 1243 aRK 1245 (1666)
T KOG0985|consen 1243 ARK 1245 (1666)
T ss_pred hhh
Confidence 443
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.6e-05 Score=74.57 Aligned_cols=247 Identities=12% Similarity=0.009 Sum_probs=174.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHH
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVD 164 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~ 164 (475)
.-+.++|+..+|.-.|+...... +-+...|.-|.......++-..|+..+.+..+.. +.+..+.-+|.-.|...|.-.
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence 34667888888888888887763 2356677777777777888888888888887764 236667777778888888888
Q ss_pred HHHHHHHhcCCCC-hhHHHHHH---------HHHHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 038542 165 KALKLFRSMNGRT-IVSWTSVI---------AGLAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 165 ~A~~~~~~~~~~~-~~~~~~li---------~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 233 (475)
.|...|+.-.... ...|.... ..+..........++|-++. +.+..+|......|.-.|.-.|++++|.
T Consensus 371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 371 QALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 8888887652110 00000000 11222223445556666554 4454467777777777888899999999
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
..|+.... --+.|...||.|...++...+.++|..-|++. .++|+ +.++..|.-+|...|.+++|.+.|-.++.+.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq 528 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ 528 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 99999885 33345688999999999999999999999998 78885 5678889999999999999999998887654
Q ss_pred CCC----------CchHHHHHHHHHhccChhHHH
Q 038542 312 PMH----------ESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 312 p~~----------~~~~~~l~~~~~~~g~~~~a~ 335 (475)
+.+ ...|..|=.++.-.++.|-+.
T Consensus 529 ~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~ 562 (579)
T KOG1125|consen 529 RKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQ 562 (579)
T ss_pred hcccccccCCcchHHHHHHHHHHHHHcCCchHHH
Confidence 321 135555555555555555443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00091 Score=60.45 Aligned_cols=179 Identities=9% Similarity=0.001 Sum_probs=110.5
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLS 93 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 93 (475)
+.-+...+|+..|..+++.-...+-+....+--.+...|.+.| ++++|..++..+.+ ++...|-.|.-++.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLg-dY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLG-DYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhc-cHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHH
Confidence 5556677888889988887765543333344445666777888 99999999887764 4666788888888888889
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038542 94 TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSM 173 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~ 173 (475)
.+|..+-.+.. -++.....++....+.++-++-..+++.+...- .-.-+|..+....-.+++|++++.++
T Consensus 108 ~eA~~~~~ka~-----k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-----EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAP-----KTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-----EDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCC-----CChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-----HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 88887765432 234444455556667777777777666655321 12223444444444577788887776
Q ss_pred CCC--ChhHHHH-HHHHHHHcCChHHHHHHHHHHHH
Q 038542 174 NGR--TIVSWTS-VIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 174 ~~~--~~~~~~~-li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
... +....|. +.-+|.+..-++-+.+++.--.+
T Consensus 178 L~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 178 LQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 543 2233333 23345555555555555554443
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00045 Score=70.35 Aligned_cols=253 Identities=13% Similarity=0.137 Sum_probs=150.0
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 038542 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (475)
.++.|.+.-++..+ +..|+.+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-..++....+
T Consensus 1090 ~ldRA~efAe~~n~--p~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1090 SLDRAYEFAERCNE--PAVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hHHHHHHHHHhhCC--hHHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 66667666666554 467999999999999999999888654 3677899999999999999999999998888
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------------------ChhHHHHHHHHHHHcCChHHH
Q 038542 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-----------------------TIVSWTSVIAGLAMHGRGLEA 197 (475)
Q Consensus 141 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A 197 (475)
..-.|.+ -+.||-+|++.+++.+-+++...-... ++.-|..|...+...|.+..|
T Consensus 1162 k~~E~~i--d~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~A 1239 (1666)
T KOG0985|consen 1162 KVREPYI--DSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGA 1239 (1666)
T ss_pred hhcCccc--hHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 7666554 468999999999998877765421110 223344444444455555544
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C
Q 038542 198 VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-P 276 (475)
Q Consensus 198 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~ 276 (475)
.+.-++ ..+..||..+-.+|...+.+..| +|.- .++.....-..-++.-|-..|-+++...+++.. |
T Consensus 1240 VD~aRK------Ans~ktWK~VcfaCvd~~EFrlA-----QiCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LG 1307 (1666)
T KOG0985|consen 1240 VDAARK------ANSTKTWKEVCFACVDKEEFRLA-----QICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLG 1307 (1666)
T ss_pred HHHhhh------ccchhHHHHHHHHHhchhhhhHH-----HhcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhc
Confidence 443322 12344555555555554444333 2221 122233344455666666666666666666654 4
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 277 IEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 277 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
++. .-..|+-|.-.|.+-+ +++..+.++-.-.. ...--+++++..+--|.+..-++..-
T Consensus 1308 LERAHMgmfTELaiLYskyk-p~km~EHl~LFwsR-----vNipKviRA~eqahlW~ElvfLY~~y 1367 (1666)
T KOG0985|consen 1308 LERAHMGMFTELAILYSKYK-PEKMMEHLKLFWSR-----VNIPKVIRAAEQAHLWSELVFLYDKY 1367 (1666)
T ss_pred hhHHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHhh
Confidence 332 3334444444444432 33333322222111 11223556666666666666555543
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=9.9e-05 Score=69.47 Aligned_cols=120 Identities=21% Similarity=0.208 Sum_probs=105.8
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHH
Q 038542 221 SACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELK 298 (475)
Q Consensus 221 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~ 298 (475)
-.+...|..++|+..++.+.+ ..+-|+.......+.+.+.++.++|.+.++++ ...|+ ...+-.+..++.+.|+++
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence 345578999999999999887 55566777778889999999999999999998 66675 778888999999999999
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 299 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+|+.+++.....+|.++..|..|..+|...|+..++...+.+..
T Consensus 392 eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988877665
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.34 E-value=9e-07 Score=52.59 Aligned_cols=35 Identities=31% Similarity=0.688 Sum_probs=32.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE 112 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 112 (475)
++||++|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 47999999999999999999999999999999983
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=2e-05 Score=63.51 Aligned_cols=96 Identities=13% Similarity=-0.035 Sum_probs=85.1
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
+....-.+...+...|++++|.++|+-. .+.| +..-|-.|...|...|++++|+..+.++..++|+++.++..+..+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3455556667788999999999999988 4555 6778899999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHh
Q 038542 326 AKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~ 343 (475)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999988775
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.4e-06 Score=51.79 Aligned_cols=34 Identities=50% Similarity=0.853 Sum_probs=30.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD 212 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 212 (475)
.+||++|.+|++.|++++|.++|++|.+.|++||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3789999999999999999999999999998887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.28 E-value=4.3e-05 Score=66.16 Aligned_cols=134 Identities=16% Similarity=0.049 Sum_probs=113.8
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTL 287 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~l 287 (475)
.|+......+-.++...|+-+....+...... ....+.......+....+.|++.+|...|++. +-.+|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45433336677788888998888888877654 44455566677899999999999999999998 445689999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
..+|.+.|+++.|...+.+.+++.|.++..++.|...|.-.|++++|..++......+
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~ 198 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP 198 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999999999999999999999999999998876544
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00086 Score=58.33 Aligned_cols=228 Identities=15% Similarity=0.066 Sum_probs=119.1
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH-HHHHHHHHHcCCCCCccHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG-KWVESFIEKQMVNRSVGLCNALI 154 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~li 154 (475)
++..-.-+-++|...|.+...+.- ... |-.|....+..+.......++.+.- ..+.+.+.......+......-.
T Consensus 40 ~~e~d~y~~raylAlg~~~~~~~e---I~~-~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa 115 (299)
T KOG3081|consen 40 DVELDVYMYRAYLALGQYQIVISE---IKE-GKATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAA 115 (299)
T ss_pred hhHHHHHHHHHHHHcccccccccc---ccc-ccCChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhh
Confidence 333444455666666665443222 221 1123333333333333333333222 23333343333333323333334
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHH
Q 038542 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH----CGLVD 230 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~ 230 (475)
..|.+.|++++|++.......-+....+ ...+.+..+.+-|.+.+++|.+. .+..|.+.|.+++.+ .+.+.
T Consensus 116 ~i~~~~~~~deAl~~~~~~~~lE~~Al~--VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~q 190 (299)
T KOG3081|consen 116 IIYMHDGDFDEALKALHLGENLEAAALN--VQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQ 190 (299)
T ss_pred HHhhcCCChHHHHHHHhccchHHHHHHH--HHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhh
Confidence 5677778888888887774332333332 34455667777788888888763 355666666665543 35567
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGEL-KLAESITKRL 307 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~~ 307 (475)
+|.-+|++|.. ...|+..+.+.+..+....|++++|..++++. ....++.+...++..-...|.. +.-.+.+.++
T Consensus 191 dAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 191 DAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred hHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 77777777765 45566666666666666677777777766666 2222445554444444444433 3344555555
Q ss_pred HhCCCCC
Q 038542 308 IGNEPMH 314 (475)
Q Consensus 308 ~~~~p~~ 314 (475)
....|..
T Consensus 269 k~~~p~h 275 (299)
T KOG3081|consen 269 KLSHPEH 275 (299)
T ss_pred HhcCCcc
Confidence 5555554
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00048 Score=64.98 Aligned_cols=146 Identities=15% Similarity=0.070 Sum_probs=115.9
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK-IEHYGCMVD 257 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 257 (475)
..+--..-.+...|+.++|+..++.+... .+-|..........+...++.++|.+.++.+... .|+ ....-.+..
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~ 382 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQ 382 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHH
Confidence 34444455566789999999999998875 2344555555667889999999999999999863 555 566777889
Q ss_pred HHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 258 MLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
+|.+.|++.+|..+++.. ..+-|+..|..|..+|...|+..++.... ...|...|+|++|.
T Consensus 383 all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~-----------------AE~~~~~G~~~~A~ 445 (484)
T COG4783 383 ALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLAR-----------------AEGYALAGRLEQAI 445 (484)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHH-----------------HHHHHhCCCHHHHH
Confidence 999999999999999988 33448899999999999999988776654 34677889999999
Q ss_pred HHHHHHHhCC
Q 038542 336 KIREVMDKRG 345 (475)
Q Consensus 336 ~~~~~m~~~~ 345 (475)
.......++.
T Consensus 446 ~~l~~A~~~~ 455 (484)
T COG4783 446 IFLMRASQQV 455 (484)
T ss_pred HHHHHHHHhc
Confidence 9988887754
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00092 Score=65.13 Aligned_cols=260 Identities=13% Similarity=0.089 Sum_probs=166.8
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
|..++..| ..+++...+++.+.+... .+-...|.....-.+...|+-++|........+..+. +.+.|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33344443 356677777777777662 2333445444444456677888887777776665443 45567777777777
Q ss_pred cCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 160 CGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
..++++|++.|.... ..|...|.-+.-.-++.|+++.......+..+.. +-....|..+..+.--.|+...|..++
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il 166 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEIL 166 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888888887654 3366666666655667777777777777776642 223456667777777788888888888
Q ss_pred HHhhhhcCCCCChhHHHHHHH------HHHHcCCHHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 237 DSMKNDFGIIPKIEHYGCMVD------MLCRSGRVKEAHEFIQKMP-IEAN-PIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 237 ~~m~~~~~~~p~~~~~~~li~------~~~~~g~~~~A~~~~~~m~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+...+...-.|+...|.-... .....|.+++|++.+..-. -.-| ...-.+-...+.+.+++++|..++..++
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 888775333466655554433 3456788888888777661 1112 2222334456778899999999999999
Q ss_pred hCCCCCCchHHHHHHHHH-hccChhHHHHHHHHHHh
Q 038542 309 GNEPMHESNYVLLSHIYA-KLLRWEKKTKIREVMDK 343 (475)
Q Consensus 309 ~~~p~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~~ 343 (475)
..+|++...|..+..++. -.+..+....++....+
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 999998888888888876 23333333355554443
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.5e-05 Score=64.40 Aligned_cols=96 Identities=19% Similarity=0.181 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
......+...+...|++++|.+.|+.. ...| +...|..+...+...|+++.|...+++..+.+|.++..+..+..+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 344556667777778888888877776 3334 56777777778888888888888888888888888888888888888
Q ss_pred hccChhHHHHHHHHHHhC
Q 038542 327 KLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~ 344 (475)
..|++++|.+.++...+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888776653
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.7e-05 Score=73.79 Aligned_cols=122 Identities=14% Similarity=0.119 Sum_probs=94.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCA 293 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~ 293 (475)
...|+..+...++++.|..+|+++.+. .|+ ....++..+...++-.+|.+++.+. ...| +...+..-...|..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 345566666677788888888877764 233 4455667777777777777777766 2233 66666667777889
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
.++++.|..+++++.+..|.+..+|..|..+|...|+++.|...++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 9999999999999999999999999999999999999999999988775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00044 Score=70.90 Aligned_cols=210 Identities=13% Similarity=0.090 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHHcCChhHH-HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 77 SVSWSAMIGGYARLGLSTDA-IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A-~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
+...+.+=.+.+.-|..++| .+++.+..+ ++...........+..-...... ....+...+..|..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La~ 94 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVAR 94 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHHH
Confidence 33444444555566666666 344444432 33333333333333222222222 24557888999999
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNG--R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 232 (475)
...+.|.+++|+.+++...+ | +...+..+...+.+.+++++|+...++..... +-+......+..++.+.|++++|
T Consensus 95 i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~~~~A 173 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQSEQA 173 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcchHHH
Confidence 99999999999999998864 3 56788889999999999999999999999863 33456677778889999999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
..+|+++.. ..+-+...+..+..++...|+.++|...|++. ...|...-|+.++. +...-..+++++.
T Consensus 174 ~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~ 243 (694)
T PRK15179 174 DACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRLV------DLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHHH------HHHHHHHHHHHcC
Confidence 999999997 33345788999999999999999999999998 33455566665543 3333445555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.2e-06 Score=50.54 Aligned_cols=34 Identities=29% Similarity=0.527 Sum_probs=30.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP 110 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 110 (475)
+.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3689999999999999999999999999999887
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0011 Score=65.31 Aligned_cols=192 Identities=16% Similarity=0.165 Sum_probs=114.5
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHH
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A 96 (475)
+.+....+.|.+|..+++.+... ...+.-|..+.+.|+..| +++.|.++|-+. ..++--|..|.++|+|..|
T Consensus 739 ieaai~akew~kai~ildniqdq--k~~s~yy~~iadhyan~~-dfe~ae~lf~e~-----~~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQ--KTASGYYGEIADHYANKG-DFEIAEELFTEA-----DLFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhh--ccccccchHHHHHhccch-hHHHHHHHHHhc-----chhHHHHHHHhccccHHHH
Confidence 34444556677777777766655 233445666777777777 888888877553 2355567777788888877
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC
Q 038542 97 IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR 176 (475)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~ 176 (475)
.++-.+.. |.......|..-..-.-..|.+.+|.+++-.+ | .|+ .-|.+|-+.|..++.+++..+-...
T Consensus 811 ~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 811 FKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHHhChh
Confidence 77755443 22333444444444456667777776665332 1 223 2466777777777777776654321
Q ss_pred -ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 177 -TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 177 -~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
-..|...+..-|-..|+...|...|-+..+ |.+.++.|-.++.+++|.++-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayria 931 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIA 931 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHH
Confidence 123444555666667777777766654332 445556666666666665543
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.0022 Score=66.86 Aligned_cols=238 Identities=11% Similarity=0.016 Sum_probs=160.8
Q ss_pred CCC-CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHH
Q 038542 6 VSP-NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDI-HVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAM 83 (475)
Q Consensus 6 ~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~l 83 (475)
+.| +...+..|+..+...+++++|.++.+...+. .|+. ..|-.+...|.+.+ +.+++..+ .+
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~-~~~~~~lv-------------~~ 89 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRR-PLNDSNLL-------------NL 89 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhc-chhhhhhh-------------hh
Confidence 344 4457888999999999999999999977765 4444 33333333566666 65544433 45
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 163 (475)
+.......++.-+..+...|... .-+...+-.+..+|-+.|+.+++..+++++++.. +.|+.+.|.+...|+.. ++
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 55556666665555555666653 3355678889999999999999999999999987 55888999999999999 99
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 164 DKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA-FVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 164 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
++|.+++.+.. .-|...+++.++.++|.++... .|+... |..+++.....
T Consensus 166 ~KA~~m~~KAV-----------~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~f~~i~~ki~~~---------------- 216 (906)
T PRK14720 166 EKAITYLKKAI-----------YRFIKKKQYVGIEEIWSKLVHY--NSDDFDFFLRIERKVLGH---------------- 216 (906)
T ss_pred HHHHHHHHHHH-----------HHHHhhhcchHHHHHHHHHHhc--CcccchHHHHHHHHHHhh----------------
Confidence 99999988753 3477788999999999999885 344332 33333222211
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 243 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.|..--..++-.+...|-...+++++..+++.+ ...| |.....-++..|.
T Consensus 217 ~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 217 REFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 121222334444555666777777777777776 4343 4455555555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.17 E-value=8.3e-05 Score=60.07 Aligned_cols=113 Identities=12% Similarity=-0.004 Sum_probs=86.8
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC
Q 038542 200 LFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI 277 (475)
Q Consensus 200 l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~ 277 (475)
+|++.... .|+ ......+...+...|++++|...++.... ..+.+...+..+...+.+.|++++|...++.. ..
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555543 343 34556677778888999999999988876 23446778888888888999999999888877 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 278 EA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 278 ~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
.| +...|..+...+...|+++.|...+++..+..|++..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 44 5777888888899999999999999999999987754
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=9.8e-05 Score=70.03 Aligned_cols=127 Identities=13% Similarity=0.122 Sum_probs=94.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
..+|+..+...++++.|..+|+++.+.+...+..++..+...++-.+|++++++..... +-|......-...|.+.++.
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~ 250 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKY 250 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCH
Confidence 34556666667888888888888887776666677788888888888888888887652 34555555556667788888
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 279 (475)
+.|..+.+++.+ -.+-+..+|..|..+|.+.|++++|+-.++.+|..|
T Consensus 251 ~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 251 ELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888888888875 233344588888888888888888888888886554
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00069 Score=67.65 Aligned_cols=239 Identities=15% Similarity=0.163 Sum_probs=157.9
Q ss_pred ChhHHHHHHH--HHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC-C--------CCCCH
Q 038542 44 DIHVQNTLVH--MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-G--------VCPDE 112 (475)
Q Consensus 44 ~~~~~~~li~--~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g--------~~p~~ 112 (475)
|..+-.++++ .|...| +.+.|.+-..-+. +-..|..|.+.+.+..+.+-|.-.+-.|... | -.|+
T Consensus 725 d~~TRkaml~FSfyvtiG-~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~- 800 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIG-SMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE- 800 (1416)
T ss_pred CHHHHHhhhceeEEEEec-cHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-
Confidence 4455555554 356667 8888887766654 4567888888888888877776666555431 1 1222
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCC-hhHHHHHHHHHHHc
Q 038542 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRT-IVSWTSVIAGLAMH 191 (475)
Q Consensus 113 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~ 191 (475)
.+=.-+......+|.+++|+.+|.+-.+. ..|=..|-..|.|++|.++-+.-..-- -.||..-..-+-..
T Consensus 801 e~eakvAvLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear 871 (1416)
T KOG3617|consen 801 EDEAKVAVLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEAR 871 (1416)
T ss_pred chhhHHHHHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhh
Confidence 22222333346788899999999887654 234456777889999888765432111 13455455555556
Q ss_pred CChHHHHHHHHHH----------HHcC---------CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH
Q 038542 192 GRGLEAVALFEEM----------LEAG---------VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252 (475)
Q Consensus 192 g~~~~A~~l~~~m----------~~~g---------~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 252 (475)
++.+.|++.|++. .... -.-|...|.-........|+++.|+.+|...+. |
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~ 941 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------Y 941 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------h
Confidence 7777777777652 2111 123445566666677788999999999887765 6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
-+++...|-.|+.++|-++-++-+ |......|.+.|-..|++.+|...|.++.
T Consensus 942 fs~VrI~C~qGk~~kAa~iA~esg---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 942 FSMVRIKCIQGKTDKAARIAEESG---DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhheeeEeeccCchHHHHHHHhcc---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 677788888888888888888765 55556667788888888888888777654
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0091 Score=57.29 Aligned_cols=336 Identities=10% Similarity=0.095 Sum_probs=198.9
Q ss_pred CCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC--ChhHHHHHH
Q 038542 7 SPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER--DSVSWSAMI 84 (475)
Q Consensus 7 ~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~--~~~~~~~li 84 (475)
+-|..+|+.|++-+... ..++++..++++... ++.....|..-|.+-.+.. +++..+++|.+.... ++..|...+
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~sk-dfe~VEkLF~RCLvkvLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASK-DFESVEKLFSRCLVKVLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhh-hHHHHHHHHHHHHHHHhhHhHHHHHH
Confidence 44778999999877665 999999999999875 4667788888899888888 999999999998654 777888777
Q ss_pred HHHHHc-CChhH----HHHHHHHH-HHCCCCCCHH-HHH---HHHHH------HhccCChHHHHHHHHHHHHcCCCCCcc
Q 038542 85 GGYARL-GLSTD----AIDLFRQM-QISGVCPDEI-TMV---TVLSA------CTDLGALEVGKWVESFIEKQMVNRSVG 148 (475)
Q Consensus 85 ~~~~~~-g~~~~----A~~~~~~m-~~~g~~p~~~-t~~---~ll~~------~~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (475)
+--.+. |+... ..+.|+-. .+.|..+-.. .|+ ..+.. +....+++..+.++++++...+.-=..
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 654443 22222 22333322 3335433222 222 23322 233335566667777766432211001
Q ss_pred HHH------HHHHH-------HHhcCCHHHHHHHHHhcCC--------------CC-------hhHHHHHHH--------
Q 038542 149 LCN------ALIDM-------FAKCGDVDKALKLFRSMNG--------------RT-------IVSWTSVIA-------- 186 (475)
Q Consensus 149 ~~~------~li~~-------y~~~g~~~~A~~~~~~~~~--------------~~-------~~~~~~li~-------- 186 (475)
.|+ .=|+- --+...+..|++++++... +. +..|-.+|.
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 111 00110 1122335556666554321 00 011211111
Q ss_pred -----------------------------------------HHHHcCC-------hHHHHHHHHHHHHcCCCCCHHHHHH
Q 038542 187 -----------------------------------------GLAMHGR-------GLEAVALFEEMLEAGVPPDDVAFVG 218 (475)
Q Consensus 187 -----------------------------------------~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~ 218 (475)
.+...|+ .+++..+++.....-..-+..+|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0111111 3344444444433222223333433
Q ss_pred HHHHHh---cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC-CHHHHHHHHHHH
Q 038542 219 LLSACS---HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEA-NPIIWRTLISAC 291 (475)
Q Consensus 219 ll~~~~---~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p-~~~~~~~li~~~ 291 (475)
+...-- .-...+....+++++.....+.|+. +|.+++..-.|..-+..|..+|.++ +..+ ++.+.++++.-+
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~ 412 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYY 412 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHH
Confidence 332111 1112445556666666554555654 6777888888888889999999888 4444 778888888877
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
+. ++..-|.++|+--+...++++..-...+.-+...++-..+..+|++....++.
T Consensus 413 cs-kD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~ 467 (656)
T KOG1914|consen 413 CS-KDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS 467 (656)
T ss_pred hc-CChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence 64 67888999999988888877766667777788889989999999988887544
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0013 Score=65.81 Aligned_cols=403 Identities=13% Similarity=0.109 Sum_probs=223.3
Q ss_pred CcchHHHHHH--HHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC-----------
Q 038542 9 NKFTYPFVLK--ACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER----------- 75 (475)
Q Consensus 9 ~~~t~~~ll~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~----------- 75 (475)
|..|=.+++. .|...|+.+.|-.-...+. +..+|..+..|+.+.. +++-|.-.+..|...
T Consensus 725 d~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~-RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTR-RLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred CHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhc-cccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 4444455552 3456678887766655543 3468999999999988 888888777777531
Q ss_pred Ch-hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHH
Q 038542 76 DS-VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154 (475)
Q Consensus 76 ~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 154 (475)
|. .+=.-....-...|..++|+.+|++-+. |..+=..|...|.+++|.++-+.--+..+. .+|....
T Consensus 798 ~~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr---~Tyy~yA 865 (1416)
T KOG3617|consen 798 NGEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIHLR---NTYYNYA 865 (1416)
T ss_pred CCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhccceehh---hhHHHHH
Confidence 11 1111222333466888888888888765 334445567788888887775532222111 2344444
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC-----------------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 155 DMFAKCGDVDKALKLFRSMNGR-----------------------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~~-----------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.-+-..+|.+.|++.|++...+ |...|.=-....-..|..+.|+.+|.....
T Consensus 866 ~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----- 940 (1416)
T KOG3617|consen 866 KYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----- 940 (1416)
T ss_pred HHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh-----
Confidence 4455567788888877765322 222222222233346788888888776654
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~ 291 (475)
|-++++..|-.|+.++|-++-++-. |......|...|-..|++.+|..+|.+.. ++...|+.|
T Consensus 941 ----~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq------afsnAIRlc 1003 (1416)
T KOG3617|consen 941 ----YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLARMYENDGDVVKAVKFFTRAQ------AFSNAIRLC 1003 (1416)
T ss_pred ----hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH------HHHHHHHHH
Confidence 5567777888999999998876533 45566678899999999999999998862 333334433
Q ss_pred HhcCC---------------HHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH--------HHhCCCcc
Q 038542 292 CARGE---------------LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV--------MDKRGMKK 348 (475)
Q Consensus 292 ~~~g~---------------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------m~~~~~~~ 348 (475)
..++- .-.|-++|++. ......-...|-++|.+.+|.++--+ +...++.+
T Consensus 1004 KEnd~~d~L~nlal~s~~~d~v~aArYyEe~-------g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~ 1076 (1416)
T KOG3617|consen 1004 KENDMKDRLANLALMSGGSDLVSAARYYEEL-------GGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDA 1076 (1416)
T ss_pred HhcCHHHHHHHHHhhcCchhHHHHHHHHHHc-------chhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCC
Confidence 33322 22233333331 12233445678888888888776322 12222222
Q ss_pred CCCccEEEECCEEEEEEeCCCCCccHHHHHHHHH------HHHHHHHHcCcccCCc-----ccc--ccCChhhhhhhhhh
Q 038542 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLD------EMGRKMKKAGYVPTTS-----EVL--LDINEEDKEDALNK 415 (475)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~------~l~~~m~~~g~~pd~~-----~~~--~~~~~~~~~~~~~~ 415 (475)
... ..+-+....|+. .|.+.+++..+|- +.++..++.|+..... |.. ...+++++..+|..
T Consensus 1077 ~sD---p~ll~RcadFF~---~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeq 1150 (1416)
T KOG3617|consen 1077 GSD---PKLLRRCADFFE---NNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQ 1150 (1416)
T ss_pred CCC---HHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHH
Confidence 111 111111111222 3455555554432 3333334444332211 111 12344444444432
Q ss_pred hhHHHHH--HH---hccCCCCCCcEEEecccccCcCcchhhHHHHhHhCceEEee
Q 038542 416 HSEKLAI--AF---ALLKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVR 465 (475)
Q Consensus 416 ~~e~la~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~~r~i~~r 465 (475)
..|.+-- +| .-.-|..|..++.++.|-..||-....-|-+...+|||-+=
T Consensus 1151 vae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLKSGdt~KI~FFAn~sRqkEiYIm 1205 (1416)
T KOG3617|consen 1151 VAELCLQQGAYHAATKKFTQAGDKLSAMRALLKSGDTQKIRFFANTSRQKEIYIM 1205 (1416)
T ss_pred HHHHHHhccchHHHHHHHhhhhhHHHHHHHHHhcCCcceEEEEeeccccceeeee
Confidence 2221110 00 11235566666777777777777777777777777887664
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.1e-06 Score=48.90 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.+||++|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777777777777777777777777777666
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00042 Score=70.57 Aligned_cols=61 Identities=11% Similarity=0.066 Sum_probs=40.8
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
...+|..+...+....+++-|...|.+...++|.+...|......-...|+.-++..+|..
T Consensus 849 ~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 849 CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred chhheeccceeEEecccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 4555666666666666777777777777777777766666666666666766666666655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0009 Score=58.22 Aligned_cols=243 Identities=12% Similarity=0.073 Sum_probs=149.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 163 (475)
++-+.-.|.+..++..-...... +-+...-..+-++|...|.+... ...+.. |-.|.......+......-++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~---~~eI~~-~~~~~lqAvr~~a~~~~~e~~~ 88 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIV---ISEIKE-GKATPLQAVRLLAEYLELESNK 88 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHccccccc---cccccc-ccCChHHHHHHHHHHhhCcchh
Confidence 45566678888777665554433 13444444566666666655322 122222 2223333333333333333443
Q ss_pred HHH-HHHHHhcCCC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038542 164 DKA-LKLFRSMNGR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238 (475)
Q Consensus 164 ~~A-~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 238 (475)
++- .++.+.+..+ +......-...|++.|++++|++..+... ..+.. ..=...+.+..+.+-|.+.++.
T Consensus 89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~--Al~VqI~lk~~r~d~A~~~lk~ 162 (299)
T KOG3081|consen 89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAA--ALNVQILLKMHRFDLAEKELKK 162 (299)
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 332 2333444333 22222223445888999999998887621 12222 2223445667788999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 239 MKNDFGIIPKIEHYGCMVDMLCR----SGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
|..- .+..+.+.|..++.+ .+.+.+|.-+|++| ...|+..+.+-...++...|++++|..+++.++..++
T Consensus 163 mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~ 238 (299)
T KOG3081|consen 163 MQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA 238 (299)
T ss_pred HHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence 9862 344566666666654 46688999999999 4678888888888999999999999999999999999
Q ss_pred CCCchHHHHHHHHHhccChhHH-HHHHHHHH
Q 038542 313 MHESNYVLLSHIYAKLLRWEKK-TKIREVMD 342 (475)
Q Consensus 313 ~~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 342 (475)
.++.+...++-.-...|.-.++ .+....++
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 8888888887777777765443 44444444
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.0021 Score=55.60 Aligned_cols=126 Identities=18% Similarity=0.266 Sum_probs=92.3
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
-..|++++|+++++...+.. +.|.+++..=+...-..|+.-+|++-+....+ .+..|.+.|.-+...|...|++++|
T Consensus 97 Ea~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA 173 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKA 173 (289)
T ss_pred HHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHH
Confidence 34678888888888888765 55666776666666667777788887877776 5677888899999999999999999
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCch
Q 038542 269 HEFIQKM-PIEA-NPIIWRTLISACCA---RGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 269 ~~~~~~m-~~~p-~~~~~~~li~~~~~---~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.-.++++ -+.| ++..+..+...+.. ..+++.|.+++.+.+++.|.+...
T Consensus 174 ~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 174 AFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHH
Confidence 8888888 3445 44455555554433 346778899999999998855443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.96 E-value=9.8e-06 Score=46.48 Aligned_cols=31 Identities=29% Similarity=0.797 Sum_probs=26.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGV 108 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 108 (475)
++||+|+++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 4788899999999999999999998888764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00014 Score=53.87 Aligned_cols=92 Identities=20% Similarity=0.227 Sum_probs=71.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 329 (475)
+..+...+...|++++|...+++. ...| +...+..+...+...++++.|.+.+++.....|.+...+..+..++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455666777788888888888776 3334 34667777788888888889998888888888887778888888888888
Q ss_pred ChhHHHHHHHHHHh
Q 038542 330 RWEKKTKIREVMDK 343 (475)
Q Consensus 330 ~~~~a~~~~~~m~~ 343 (475)
++++|...+....+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888877654
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0011 Score=54.34 Aligned_cols=114 Identities=19% Similarity=0.210 Sum_probs=54.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh--hHHHHHHHHHHHcCCH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPD---DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI--EHYGCMVDMLCRSGRV 265 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~g~~ 265 (475)
.++...+...++.+.... +.+ ......+...+...|++++|...|+..... ...|+. .....|...+...|++
T Consensus 24 ~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA~~~~~~~~~ 101 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLARILLQQGQY 101 (145)
T ss_pred CCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHHHHHHHcCCH
Confidence 555555555555555542 111 122223344555566666666666665553 211211 1223344455555566
Q ss_pred HHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 266 KEAHEFIQKMPIE-ANPIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 266 ~~A~~~~~~m~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
++|+..++..+-. .....+......+...|+.++|...|++
T Consensus 102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6665555554211 1233444445555555555555555544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00055 Score=56.03 Aligned_cols=125 Identities=15% Similarity=0.172 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANP----IIWRTL 287 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~l 287 (475)
..|..++.++ ..++...+...++.+.+.++-.| .....-.+...+...|++++|...|+.. ...|+. .....|
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 3455566665 48889999999999988533221 1234444667888999999999999998 222433 345557
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
...+...|++++|...++.. ...+..+..+..+.++|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 78889999999999999763 23344456778899999999999999999875
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.88 E-value=1.6e-05 Score=45.54 Aligned_cols=29 Identities=38% Similarity=0.624 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00034 Score=54.90 Aligned_cols=101 Identities=10% Similarity=0.058 Sum_probs=52.4
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHH
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLIS 289 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~ 289 (475)
+..+...+...|++++|...|..+.....-.| ....+..+..++.+.|++++|.+.|+.+ ...|+ ..++..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 33444445555555555555555554211101 1233444555555556666665555554 11221 344555556
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 290 ACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 290 ~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
++...|+.+.|...++++.+..|+++.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHHCcCChh
Confidence 666666666666666666666665543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.80 E-value=2.3e-05 Score=57.36 Aligned_cols=77 Identities=21% Similarity=0.311 Sum_probs=39.8
Q ss_pred CCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHH
Q 038542 263 GRVKEAHEFIQKM----PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 263 g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
|++++|..+++++ +..|+...|..+..++.+.|++++|..++++ .+.+|.+......++.+|.+.|++++|.+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4555555555555 2111333444455566666666666666655 4444444444445566666666666666665
Q ss_pred HH
Q 038542 339 EV 340 (475)
Q Consensus 339 ~~ 340 (475)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 43
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00037 Score=54.69 Aligned_cols=96 Identities=19% Similarity=0.096 Sum_probs=80.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CchHHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMH---ESNYVLL 321 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 321 (475)
.++..+...+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++.+....|.+ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45677788899999999999999988 22332 4567778899999999999999999999887765 4568888
Q ss_pred HHHHHhccChhHHHHHHHHHHhCC
Q 038542 322 SHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
..++.+.|++++|.+.++.+.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999988754
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0053 Score=58.78 Aligned_cols=245 Identities=11% Similarity=-0.039 Sum_probs=155.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccH-------HHH
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL-------CNA 152 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~ 152 (475)
.-.+.++.-+..++..|++-+....+.. -+..-++....++...|.+.+........++.|-. ...- ...
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456777777788888888888877643 23333444555577777777776666665555422 1111 122
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCH
Q 038542 153 LIDMFAKCGDVDKALKLFRSMNGR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD-VAFVGLLSACSHCGLV 229 (475)
Q Consensus 153 li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~ 229 (475)
+..+|.+.++++.|...|.+...+ +.. ...+....++++.......- +.|.. .-...-.+.+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 344777778888888888774321 211 11222334444444444333 23332 1122235667789999
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
..|...|.++.+ ..+.|...|....-+|.+.|.+.+|++-.+.. ...|+ ...|.-=..++....+++.|.+.|++.
T Consensus 375 ~~Av~~YteAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999987 44667889999999999999999998876655 44453 444544455666778999999999999
Q ss_pred HhCCCCCCchHHHHHHHHHhccChhHHHHHH
Q 038542 308 IGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 308 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
++.+|.+......+.+++......+...++.
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 9999988766555555554432233333333
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0006 Score=64.84 Aligned_cols=100 Identities=12% Similarity=0.013 Sum_probs=63.3
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGEL 297 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 297 (475)
.......|++++|...|+...+ --+.+...|..+..+|.+.|++++|...++++ .+.| +...|..+..+|...|++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~ 86 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEY 86 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCH
Confidence 3445556777777777777665 22334556666666677777777777776666 3344 455666666667777777
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHH
Q 038542 298 KLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
++|...++++++++|.++.....+
T Consensus 87 ~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 87 QTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHH
Confidence 777777777777777665544443
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0001 Score=51.52 Aligned_cols=64 Identities=23% Similarity=0.245 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc-ChhHHHHHHHHHHh
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL-RWEKKTKIREVMDK 343 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~a~~~~~~m~~ 343 (475)
+..+|..+...+...|++++|+..|+++++.+|.++..|..++.+|...| ++++|.+.++...+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788899999999999999999999999999999999999999999999 79999999887664
|
... |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0069 Score=52.52 Aligned_cols=161 Identities=16% Similarity=0.138 Sum_probs=121.6
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG-LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (475)
|..++-+....|+.+-|...++.+... + |...-... -.--+-..|++++|.++++.+.++ -+.|..+|-.-+.+.
T Consensus 55 ~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAil 130 (289)
T KOG3060|consen 55 YEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAIL 130 (289)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHHH
Confidence 334455566678888888888888775 2 43321111 111234578999999999999984 355677788778788
Q ss_pred HHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc---ChhHH
Q 038542 260 CRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL---RWEKK 334 (475)
Q Consensus 260 ~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---~~~~a 334 (475)
-..|+--+|.+-+.+. .+..|...|.-|-..|...|+++.|.-.+++++=..|.++..+..+...+.-.| +.+.+
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~a 210 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELA 210 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHH
Confidence 8888888888777665 455699999999999999999999999999999999999988888888876555 56677
Q ss_pred HHHHHHHHhCC
Q 038542 335 TKIREVMDKRG 345 (475)
Q Consensus 335 ~~~~~~m~~~~ 345 (475)
.+.+.+..+..
T Consensus 211 rkyy~~alkl~ 221 (289)
T KOG3060|consen 211 RKYYERALKLN 221 (289)
T ss_pred HHHHHHHHHhC
Confidence 77777766543
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0016 Score=66.47 Aligned_cols=179 Identities=9% Similarity=-0.024 Sum_probs=108.2
Q ss_pred HHHHHHHHHhcCCCCh---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 163 VDKALKLFRSMNGRTI---VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 163 ~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
...|...|-+....|+ ..|..|...|+..-+...|.+.|++..+.. ..|..........|+...+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4444444444333332 567777777776667777777777776643 334555666777777777777777763222
Q ss_pred hhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.+.-....-...|....-.|...++...|..-|+.. ...| |...|..+..+|...|++..|.++|.++..++|.+...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~ 632 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYG 632 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHH
Confidence 211000001122222333455667777777777766 4445 67778888888888888888888888887777776544
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHH
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
-.-..-+-+..|.+.++...+....
T Consensus 633 ~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 633 RFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 4444555566677777776666554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00072 Score=49.94 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
.+..+...+...|++++|.+.++.. ...| +..++..+...+...|+++.|...+.+..+..|
T Consensus 36 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 3334444444444444454444443 1112 223455555555555555556555555554443
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.001 Score=63.27 Aligned_cols=102 Identities=11% Similarity=0.022 Sum_probs=82.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (475)
....+...|++++|+.+|++..+.. +.+...|..+..+|...|++++|+..++.+.. --+.+...|..+..+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3456778899999999999999864 45677888889999999999999999999986 23346778889999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038542 264 RVKEAHEFIQKM-PIEANPIIWRTLI 288 (475)
Q Consensus 264 ~~~~A~~~~~~m-~~~p~~~~~~~li 288 (475)
++++|...|++. .+.|+......++
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 999999999987 5566544444443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0026 Score=58.81 Aligned_cols=257 Identities=11% Similarity=-0.026 Sum_probs=159.3
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 038542 82 AMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 161 (475)
.....+.+..++.+|+..+....... +-+..-|..-+..+...++++++.--.+.-++.... ....+.-.-.++...+
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~ 131 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALS 131 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhH
Confidence 34455666777888888888877753 223445555555566666666665444333322100 1111222223333333
Q ss_pred CHHHHHHHHH---------------hcCC-----CChhHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038542 162 DVDKALKLFR---------------SMNG-----RTIVSWTSV-IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220 (475)
Q Consensus 162 ~~~~A~~~~~---------------~~~~-----~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 220 (475)
+..+|...|+ .... |.-.+|-.+ ...+...|++++|...--..++.. ..+. +...+
T Consensus 132 ~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~--~al~v 208 (486)
T KOG0550|consen 132 DLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNA--EALYV 208 (486)
T ss_pred HHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchh--HHHHh
Confidence 3333333332 1111 111233322 234667788888888777666542 1222 22233
Q ss_pred H--HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH-------------HHHHHHHcCCHHHHHHHHHhC-C-----CCC
Q 038542 221 S--ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC-------------MVDMLCRSGRVKEAHEFIQKM-P-----IEA 279 (475)
Q Consensus 221 ~--~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~-------------li~~~~~~g~~~~A~~~~~~m-~-----~~p 279 (475)
+ ++...++.+.|...|++..+ ..|+-..-.. =..-..+.|++.+|.+.+.+. + .+|
T Consensus 209 rg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 209 RGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred cccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 3 34457788888888887663 3444322111 123356789999999999987 3 445
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
+...|.....+..+.|+.++|+.-.+++.+++|.-...|..-.+++...++|++|.+-++...+...
T Consensus 286 naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred hHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 6677888888889999999999999999999988888888889999999999999999988776543
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.043 Score=56.00 Aligned_cols=118 Identities=17% Similarity=0.274 Sum_probs=65.4
Q ss_pred CHHHHHHHHhccCCCC-hhHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 038542 61 GIELGRKVFDEMSERD-SVSWSAMIGG--YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESF 137 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~-~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 137 (475)
++..|....+++.++. -..|...+.+ +.+.|+.++|..+++.....+.. |..|...+-..|...+.++++..+|+.
T Consensus 24 qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 24 QFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 5666666666654421 1223333333 34567777777666666544322 566666666666777777777777776
Q ss_pred HHHcCCCCCccHHHHHHHHHHhcCCHHH----HHHHHHhcCCCChhHH
Q 038542 138 IEKQMVNRSVGLCNALIDMFAKCGDVDK----ALKLFRSMNGRTIVSW 181 (475)
Q Consensus 138 ~~~~~~~~~~~~~~~li~~y~~~g~~~~----A~~~~~~~~~~~~~~~ 181 (475)
..+. .|+......+..+|.+.+++.+ |.++++..+++--.-|
T Consensus 103 ~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfW 148 (932)
T KOG2053|consen 103 ANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFW 148 (932)
T ss_pred HHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHH
Confidence 6654 2345555556666666665543 4445554443333333
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.062 Score=54.91 Aligned_cols=131 Identities=11% Similarity=0.122 Sum_probs=99.5
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHH--HHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHM--YGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~--~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A 96 (475)
..+++.+|.+-.+.+.+. .|+.. |...+.+ ..+.| +.++|..+++.... .|..|...+-.+|...++.++|
T Consensus 21 d~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~g-k~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLG-KGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhc-CchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHH
Confidence 457889999998888876 45543 2233333 35677 99999999888754 3888999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 97 IDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
..+|++.... -|+..-...+..+|.+.+++.+-.++--++-+. ++-+.+.+=+.++.+..
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilq 156 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQ 156 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHH
Confidence 9999999874 678888888999999999998877776666664 44455555556665554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0019 Score=54.64 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=85.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD--DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC 254 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~ 254 (475)
....+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+.+.... .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 345666777777788888888888888776432222 356677777788888888888888777652 2224455566
Q ss_pred HHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 255 MVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
+..+|...|+...+..-++.. ...+++|.++++++.+.+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322221 122677888888888888876 5566666655554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00018 Score=49.63 Aligned_cols=57 Identities=18% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+...+...|++++|...|+++++..|.++..+..+..++...|++++|...++.+.+
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 455677888888888888888888888888888888888888888888888888765
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0046 Score=50.12 Aligned_cols=102 Identities=10% Similarity=0.032 Sum_probs=72.3
Q ss_pred HhccC-CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC
Q 038542 69 FDEMS-ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS 146 (475)
Q Consensus 69 f~~~~-~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 146 (475)
+..+. +.+......+...+...|++++|.++|+-+... .| +..-|-.|...|-..|++++|...|.......+ .|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-dd 102 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DA 102 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CC
Confidence 33444 445555666677777888888888888887764 34 444555666667778888888888888877763 46
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhc
Q 038542 147 VGLCNALIDMFAKCGDVDKALKLFRSM 173 (475)
Q Consensus 147 ~~~~~~li~~y~~~g~~~~A~~~~~~~ 173 (475)
+..+-.+..+|.+.|+.+.|++.|+..
T Consensus 103 p~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 103 PQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred chHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 667777778888888888888887764
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0047 Score=61.52 Aligned_cols=66 Identities=18% Similarity=0.175 Sum_probs=31.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
..|..+.-.....|++++|...++++ ...|+...|..+...+...|+.++|...++++..++|.++
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 34444433333445555555555444 3334444444444455555555555555555555554443
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0022 Score=58.77 Aligned_cols=133 Identities=13% Similarity=0.155 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA-CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
.+|-.++...-+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467788888888888999999999998543 2233344443333 33457788899999999984 4456777888999
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 258 MLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
.+.+.|+.+.|..+|++. ..-|. ...|...+.--.+.|+.+....+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 22233 3589999999999999999999999999887764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0011 Score=55.97 Aligned_cols=81 Identities=19% Similarity=0.076 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
..+..+...+...|++++|...|++. ...|+ ...|..+...+...|+++.|...++++++..|.+...+..+..+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555555666666666666666655 22221 35667777777788888888888888888777777777777777
Q ss_pred HHhccC
Q 038542 325 YAKLLR 330 (475)
Q Consensus 325 ~~~~g~ 330 (475)
|...|+
T Consensus 116 ~~~~g~ 121 (172)
T PRK02603 116 YHKRGE 121 (172)
T ss_pred HHHcCC
Confidence 777665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.001 Score=59.07 Aligned_cols=99 Identities=14% Similarity=0.032 Sum_probs=73.1
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 300 (475)
..+.+++++|+..|...++ -.+-|..-|..-..+|.+.|.++.|.+-.+.. .+.| ...+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4556778888888887775 23345556666677888888888887776665 5566 467888899999999999999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHH
Q 038542 301 ESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
++.|++.++++|++......|-.
T Consensus 169 ~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 169 IEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHhhhccCCCcHHHHHHHHH
Confidence 99999999999988744444433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0014 Score=49.23 Aligned_cols=80 Identities=11% Similarity=0.141 Sum_probs=64.1
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhcCC--------CHHHHHHHHHHhhhhcCCCCChhH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPDDVAFVGLLSACSHCG--------LVDKGREYFDSMKNDFGIIPKIEH 251 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~ll~~~~~~g--------~~~~a~~~~~~m~~~~~~~p~~~~ 251 (475)
-...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-+.+.+|+.|... +++|+.++
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~et 106 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDET 106 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHH
Confidence 34456666677999999999999999999 899999999999887643 344567788888875 88999999
Q ss_pred HHHHHHHHHH
Q 038542 252 YGCMVDMLCR 261 (475)
Q Consensus 252 ~~~li~~~~~ 261 (475)
|+.++..+.+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9988887764
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0013 Score=55.36 Aligned_cols=94 Identities=13% Similarity=-0.030 Sum_probs=73.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|...++++....|.....+..+.
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3456677777778888899988888877 23232 357888889999999999999999999999988888888888
Q ss_pred HHHH-------hccChhHHHHHHHHH
Q 038542 323 HIYA-------KLLRWEKKTKIREVM 341 (475)
Q Consensus 323 ~~~~-------~~g~~~~a~~~~~~m 341 (475)
.+|. ..|+++.|...+++-
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 777877666665543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.08 Score=49.25 Aligned_cols=103 Identities=22% Similarity=0.194 Sum_probs=49.7
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (475)
.|.-+...|+...|.++-++.. .||..-|...+.+++..++|++-.++-.. +-++.-|...+..+.+.|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-------kKsPIGyepFv~~~~~~~ 251 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-------KKSPIGYEPFVEACLKYG 251 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-------CCCCCChHHHHHHHHHCC
Confidence 3444445555555555544331 24555555555555555555554443221 112344555555555555
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 038542 264 RVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESIT 304 (475)
Q Consensus 264 ~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~ 304 (475)
+..+|..++.+++. ..-+..|.+.|++.+|.+..
T Consensus 252 ~~~eA~~yI~k~~~-------~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 252 NKKEASKYIPKIPD-------EERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred CHHHHHHHHHhCCh-------HHHHHHHHHCCCHHHHHHHH
Confidence 55555555555321 22334445555555554443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.084 Score=49.11 Aligned_cols=111 Identities=14% Similarity=0.190 Sum_probs=86.6
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~ 293 (475)
.+.+..+.-|...|+...|.++-.. +.+ |+...|-..+.+|+..++|++-.++... +.++.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~----Fkv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKE----FKV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHH----cCC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 3455566777778888877776444 444 7888999999999999999998887664 2345778889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
.|+.++|..+..+ ..+..-+..|.++|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999988877 12356778899999999998875443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0039 Score=57.18 Aligned_cols=128 Identities=13% Similarity=0.030 Sum_probs=94.1
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA-CTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
.+|..+++...+.+..+.|..+|.+.++.+ ..+...|...... +...++.+.|..+|+...+. ++.+...+...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 468888888888888899999999888543 2234444444333 33456777799999988876 56678888888999
Q ss_pred HHhcCCHHHHHHHHHhcCCC------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc
Q 038542 157 FAKCGDVDKALKLFRSMNGR------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA 207 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 207 (475)
+.+.|+.+.|+.+|++.... -...|...+.-=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999987643 2357888888888888888888888888774
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0016 Score=55.29 Aligned_cols=97 Identities=18% Similarity=0.260 Sum_probs=75.7
Q ss_pred HHHHHhc--CCCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-------------
Q 038542 167 LKLFRSM--NGRTIVSWTSVIAGLAMH-----GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC------------- 226 (475)
Q Consensus 167 ~~~~~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 226 (475)
...|+.. ..++..+|..++..|.+. |..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 4455555 456778888888888754 67777778888999999999999999999887542
Q ss_pred ---CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC
Q 038542 227 ---GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR 264 (475)
Q Consensus 227 ---g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~ 264 (475)
.+-+-|++++++|.. +|+-||.+++..+++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMEN-NGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHhccccH
Confidence 244668888999988 4999999999999888877664
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0036 Score=59.92 Aligned_cols=121 Identities=12% Similarity=0.081 Sum_probs=94.1
Q ss_pred CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHH
Q 038542 208 GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG-IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPII 283 (475)
Q Consensus 208 g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~ 283 (475)
+.+.+......+++.+....+++++..++...+.... ...-..|..++|..|...|..+++..+++.= |+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 4566778888889999888889999888887775311 1122334558999999999999999998765 88899999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCchHHHHHHHHHhc
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNE-PMHESNYVLLSHIYAKL 328 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 328 (475)
++.|++.+.+.|++..|.+++..|...+ ..++.++..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999888876554 66667777666666555
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.00041 Score=47.79 Aligned_cols=61 Identities=20% Similarity=0.273 Sum_probs=49.1
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
+...+.+.|++++|.+.|++. ...| +...|..+...+...|++++|...++++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456778889999999999888 4455 677888888999999999999999999999888763
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00059 Score=60.48 Aligned_cols=87 Identities=16% Similarity=0.182 Sum_probs=78.4
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHH
Q 038542 257 DMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334 (475)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 334 (475)
.-+.+.+++.+|+..|.+. .+.| |.+.|..=..+|.+.|.++.|.+-.+..+.++|....+|..|..+|...|++++|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4467889999999999988 6676 7788888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh
Q 038542 335 TKIREVMDK 343 (475)
Q Consensus 335 ~~~~~~m~~ 343 (475)
.+.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 999866554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00061 Score=49.75 Aligned_cols=81 Identities=19% Similarity=0.256 Sum_probs=44.7
Q ss_pred cCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHH
Q 038542 191 HGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAH 269 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 269 (475)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++.... +. .+......+..+|.+.|++++|.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~--~~-~~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKL--DP-SNPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTH--HH-CHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCC--CC-CCHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777665321 1333444466677777777777777766211 11 12233334466666777777777
Q ss_pred HHHHh
Q 038542 270 EFIQK 274 (475)
Q Consensus 270 ~~~~~ 274 (475)
+.|++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 66654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.015 Score=53.53 Aligned_cols=175 Identities=10% Similarity=0.099 Sum_probs=85.3
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHhccCChHHHHHHH
Q 038542 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV---CPD--EITMVTVLSACTDLGALEVGKWVE 135 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~p~--~~t~~~ll~~~~~~~~~~~a~~~~ 135 (475)
++++|..+|++ ....|...|++++|.+.|.+...... .+. ...|......+ +..++++|...+
T Consensus 30 ~~e~Aa~~y~~-----------Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~ 97 (282)
T PF14938_consen 30 DYEEAADLYEK-----------AANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCY-KKGDPDEAIECY 97 (282)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTHHHHHHHH
T ss_pred CHHHHHHHHHH-----------HHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HhhCHHHHHHHH
Confidence 56666666544 56777788888888888877643211 111 11122222222 222444444444
Q ss_pred HHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHc----CCC
Q 038542 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEA----GVP 210 (475)
Q Consensus 136 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~----g~~ 210 (475)
.. .++.|.+.|++..|-+++.. +...|-.. |++++|++.|++..+. | .
T Consensus 98 ~~---------------A~~~y~~~G~~~~aA~~~~~-----------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~ 150 (282)
T PF14938_consen 98 EK---------------AIEIYREAGRFSQAAKCLKE-----------LAEIYEEQLGDYEKAIEYYQKAAELYEQEG-S 150 (282)
T ss_dssp HH---------------HHHHHHHCT-HHHHHHHHHH-----------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT--
T ss_pred HH---------------HHHHHHhcCcHHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-C
Confidence 33 34556666666666555444 34455555 6666666666665432 2 1
Q ss_pred CC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC-----CCh-hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 211 PD--DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII-----PKI-EHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 211 p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-----p~~-~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
+. ...+..+...+.+.|++++|..+|++.... ... .+. ..+-..+-++...|++..|.+.+++.
T Consensus 151 ~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~-~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~ 222 (282)
T PF14938_consen 151 PHSAAECLLKAADLYARLGRYEEAIEIYEEVAKK-CLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERY 222 (282)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT-CCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-hhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 123445556666666777777766666542 111 111 12222333444556666666666654
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0035 Score=47.18 Aligned_cols=81 Identities=14% Similarity=0.013 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccC--------ChHHHHHHHHHHHHcCCCCCccH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPDEITMVTVLSACTDLG--------ALEVGKWVESFIEKQMVNRSVGL 149 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~ 149 (475)
|-...|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++.. .+-....+++.|+..+++|+..+
T Consensus 27 t~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~et 106 (120)
T PF08579_consen 27 TQIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDET 106 (120)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHH
Confidence 445567777778999999999999999999 899999999999876543 23456788889999999999999
Q ss_pred HHHHHHHHHh
Q 038542 150 CNALIDMFAK 159 (475)
Q Consensus 150 ~~~li~~y~~ 159 (475)
|+.++....+
T Consensus 107 Ynivl~~Llk 116 (120)
T PF08579_consen 107 YNIVLGSLLK 116 (120)
T ss_pred HHHHHHHHHH
Confidence 9999887664
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0025 Score=60.94 Aligned_cols=120 Identities=12% Similarity=0.085 Sum_probs=91.5
Q ss_pred cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC-C-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH
Q 038542 40 QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-R-----DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI 113 (475)
Q Consensus 40 g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 113 (475)
+.+.+......+++...... +++.+..++-+... | -..|.+++++.|...|..++++.++..=...|+-||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~-~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKD-DLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHh-HHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 33555556666777776666 78888888777654 2 12356789999999999999999999888899999999
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
|++.++..+.+.|++..|.++...|...+.-.+..++..-+.++.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999988888776666666665555555554
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.029 Score=53.96 Aligned_cols=172 Identities=13% Similarity=0.082 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-CccHHHHHHHHHHhcCCHHHHHHHH
Q 038542 93 STDAIDLFRQMQISG-VCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-SVGLCNALIDMFAKCGDVDKALKLF 170 (475)
Q Consensus 93 ~~~A~~~~~~m~~~g-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~ 170 (475)
.+.....+++++..- +.| ..+|...++.-.+..-++.|+.+|.++.+.+..+ +++++++++.-|+ .+|.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHH
Confidence 344445555554321 222 2345566666666666777777777777666555 6666777776665 45666777777
Q ss_pred HhcCC--CChhH-HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-
Q 038542 171 RSMNG--RTIVS-WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD--VAFVGLLSACSHCGLVDKGREYFDSMKNDFG- 244 (475)
Q Consensus 171 ~~~~~--~~~~~-~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~- 244 (475)
+--.. .|... -+..+.-+...++-..|..+|++....++.||. ..|..+|.--+.-|++..+.++-+++...+.
T Consensus 425 eLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 425 ELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA 504 (656)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence 64332 23322 234455556666666777777777666555553 4566677666667777776666666555333
Q ss_pred -CCCChhHHHHHHHHHHHcCCHH
Q 038542 245 -IIPKIEHYGCMVDMLCRSGRVK 266 (475)
Q Consensus 245 -~~p~~~~~~~li~~~~~~g~~~ 266 (475)
..|...+-..+++.|.-.+...
T Consensus 505 ~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 505 DQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred hhcCCCChHHHHHHHHhhccccc
Confidence 3333334444555555444433
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00023 Score=49.56 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=41.3
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
...|++++|.+.++++.+..|.+...+..++.+|.+.|++++|.++++.+..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888888888888866654
|
... |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.018 Score=50.18 Aligned_cols=136 Identities=10% Similarity=0.033 Sum_probs=88.9
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHH-----H
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNAL-----I 154 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-----i 154 (475)
-+.++..+.-.|.+.-.+.++.+..+...+.++...+.+.+...+.|+.+.|...++...+..-..+....+.+ .
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34566666667777778888888877655556667777777778888888888888877654433333333333 3
Q ss_pred HHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH
Q 038542 155 DMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV 217 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 217 (475)
..|.-..++..|...|.++... |++.-|.-.-+..-.|+..+|++.++.|.+. .|...+-+
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~e 323 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHE 323 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhh
Confidence 3455566777777777776643 4555555555555567888888888888774 44444433
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0084 Score=46.74 Aligned_cols=107 Identities=16% Similarity=0.173 Sum_probs=66.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--CccHHHHHHHHH
Q 038542 82 AMIGGYARLGLSTDAIDLFRQMQISGVCPD--EITMVTVLSACTDLGALEVGKWVESFIEKQMVNR--SVGLCNALIDMF 157 (475)
Q Consensus 82 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~li~~y 157 (475)
.+..++-..|+.++|+.+|++....|+... ...+..+.+.+...|++++|..+++........+ +..+...+..++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 345667778888888888888888776554 2355566667778888888888888777653211 222223334455
Q ss_pred HhcCCHHHHHHHHHhcCCCChhHHHHHHHHH
Q 038542 158 AKCGDVDKALKLFRSMNGRTIVSWTSVIAGL 188 (475)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 188 (475)
...|+.++|.+.+-....++...|.--|..|
T Consensus 86 ~~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6667777777766554444444444444444
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0077 Score=53.87 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=85.4
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR---GELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
-+-|.+.|-.|...|.+.|+++.|..-|.+. .+.| ++..+..+..++..+ ....++..+|++++..+|.+..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3557899999999999999999999999888 3333 667777777665443 3467889999999999999999999
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 320 LLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.|...+...|++.+|...|+.|.+..
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 99999999999999999999999865
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00098 Score=47.08 Aligned_cols=57 Identities=12% Similarity=0.082 Sum_probs=49.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
..+...++++.|.+++++++..+|.++..+.....+|...|++++|.+.++...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 567788899999999999999999988889999999999999999999998887643
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0021 Score=59.30 Aligned_cols=258 Identities=15% Similarity=0.048 Sum_probs=146.2
Q ss_pred HHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHH--H--cCCC-CCccHHHHHHH
Q 038542 85 GGYARLGLSTDAIDLFRQMQISGVCPDEI----TMVTVLSACTDLGALEVGKWVESFIE--K--QMVN-RSVGLCNALID 155 (475)
Q Consensus 85 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~--~--~~~~-~~~~~~~~li~ 155 (475)
.-+++.|+....+.+|+...+-|. -|.. .|+.+-++|.-.+++++|.++|..=+ . .|-+ -.......|.+
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGT-eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGT-EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcc-hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 346677777777777777777662 2333 34445566666777777777664321 1 0100 01112223344
Q ss_pred HHHhcCCHHHHHHHHHhcC-------CC--ChhHHHHHHHHHHHcCC--------------------hHHHHHHHHHHH-
Q 038542 156 MFAKCGDVDKALKLFRSMN-------GR--TIVSWTSVIAGLAMHGR--------------------GLEAVALFEEML- 205 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~-------~~--~~~~~~~li~~~~~~g~--------------------~~~A~~l~~~m~- 205 (475)
.+--.|.+++|.-.-.+-. .+ ...++-.+...|...|+ ++.|.++|.+=.
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4444555555544322111 11 11233334445544331 233444443321
Q ss_pred ---HcCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHh---hhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC--
Q 038542 206 ---EAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSM---KNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-- 275 (475)
Q Consensus 206 ---~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m---~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-- 275 (475)
+.|-. .-...|..|.+.|.-.|+++.|+...+.- .+++|-.. ....+..+..++.-.|+++.|.+.|+..
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~ 263 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLN 263 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHH
Confidence 11100 11234566666666778899888766532 23345433 2356777888888889999988888765
Q ss_pred -----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----hCC--CCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 276 -----PIE-ANPIIWRTLISACCARGELKLAESITKRLI----GNE--PMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 276 -----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~----~~~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+-+ ....+..+|..+|.-..+++.|+.++.+-+ +++ .-...++-+|.++|...|..++|....+.-.+
T Consensus 264 LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 264 LAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 222 245566778888888888999988887743 222 22345788899999999999888877665543
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.033 Score=51.25 Aligned_cols=100 Identities=19% Similarity=0.228 Sum_probs=66.1
Q ss_pred HHHHHHHHHhcC-CCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhCC---C-----CCCH
Q 038542 215 AFVGLLSACSHC-GLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKMP---I-----EANP 281 (475)
Q Consensus 215 t~~~ll~~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~---~-----~p~~ 281 (475)
.+..+...|... |++++|.+.|+....-+..... ...+..+...+.+.|++++|.++|++.. . +.++
T Consensus 116 ~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~ 195 (282)
T PF14938_consen 116 CLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA 195 (282)
T ss_dssp HHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence 444566677777 8999999998887764332222 2456677788999999999999999871 1 1122
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 282 I-IWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 282 ~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
. .+-..+-.+...||+..|.+.+++.....|.-
T Consensus 196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F 229 (282)
T PF14938_consen 196 KEYFLKAILCHLAMGDYVAARKALERYCSQDPSF 229 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 2 23333445667899999999999999888743
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.058 Score=48.25 Aligned_cols=173 Identities=10% Similarity=0.079 Sum_probs=97.6
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC--Ch-h---HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-
Q 038542 153 LIDMFAKCGDVDKALKLFRSMNGR--TI-V---SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH- 225 (475)
Q Consensus 153 li~~y~~~g~~~~A~~~~~~~~~~--~~-~---~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~- 225 (475)
....+.+.|++++|.+.|+++... +. . ..-.++.+|.+.+++++|...+++..+....-....+...+.+.+.
T Consensus 38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~ 117 (243)
T PRK10866 38 TAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNM 117 (243)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhh
Confidence 344455677777777777776532 11 1 1223456677778888888888877764221112233333333321
Q ss_pred -C---------------CC---HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHH
Q 038542 226 -C---------------GL---VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRT 286 (475)
Q Consensus 226 -~---------------g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~ 286 (475)
. .+ ...|...|+.+.+ -|=...-..+|...+..+...--.. --.
T Consensus 118 ~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~----------------~yP~S~ya~~A~~rl~~l~~~la~~-e~~ 180 (243)
T PRK10866 118 ALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVR----------------GYPNSQYTTDATKRLVFLKDRLAKY-ELS 180 (243)
T ss_pred hcchhhhhhccCCCccccCHHHHHHHHHHHHHHHH----------------HCcCChhHHHHHHHHHHHHHHHHHH-HHH
Confidence 0 11 1233344444443 2222223344443333331000000 113
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHES---NYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+..-|.+.|.+..|..-++.+++.-|..+. +...+..+|...|..++|..+...+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 445678889999999999999988776544 56678899999999999998876654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.011 Score=49.67 Aligned_cols=81 Identities=7% Similarity=-0.105 Sum_probs=49.1
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHH
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP--DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI 154 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 154 (475)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+....+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4466677777777788888888777776542222 12356666666777777777777777766542 22233444444
Q ss_pred HHHH
Q 038542 155 DMFA 158 (475)
Q Consensus 155 ~~y~ 158 (475)
..|.
T Consensus 114 ~i~~ 117 (168)
T CHL00033 114 VICH 117 (168)
T ss_pred HHHH
Confidence 4444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.069 Score=50.23 Aligned_cols=161 Identities=17% Similarity=0.134 Sum_probs=96.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC---Ch----hHHHHHHHHHHH---cCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGR---TI----VSWTSVIAGLAM---HGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~---~~----~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 220 (475)
-.|+-.|-...+++...++.+.+... ++ ..--...-++.+ .|+.++|++++..+......++..||..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888999999999888754 11 111223445556 788999999998866666678888888777
Q ss_pred HHHhc---------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHH----HHHHHH---HhC-------CC
Q 038542 221 SACSH---------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK----EAHEFI---QKM-------PI 277 (475)
Q Consensus 221 ~~~~~---------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~----~A~~~~---~~m-------~~ 277 (475)
..|-. ....++|...|.+. +.+.|+..+--.++..+...|.-. +..++- ... .-
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kg---Fe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKG---FEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHH---HcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 66532 22356666666543 344555544333344444444321 222221 111 11
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 278 EANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..+-..+.+++.++.-.|+.+.|.+..+++....|+.
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 2355556677777777777777777777777776543
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0051 Score=52.29 Aligned_cols=97 Identities=13% Similarity=0.147 Sum_probs=67.3
Q ss_pred HHHHhcc--CCCChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc-------------
Q 038542 66 RKVFDEM--SERDSVSWSAMIGGYARL-----GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL------------- 125 (475)
Q Consensus 66 ~~~f~~~--~~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~------------- 125 (475)
...|+.. ..++-.+|..++..|.+. |..+=....+..|.+.|+.-|..+|+.||+.+-+.
T Consensus 34 ~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~ 113 (228)
T PF06239_consen 34 EELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFM 113 (228)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhc
Confidence 3444444 345666777777776654 45555666677777777777788888777776441
Q ss_pred ---CChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 038542 126 ---GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162 (475)
Q Consensus 126 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 162 (475)
.+.+.|..++++|...|+-||..++..|++.+++.+.
T Consensus 114 hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 HYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred cCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2446778888888888888888888888888876654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.076 Score=52.26 Aligned_cols=194 Identities=14% Similarity=0.175 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 93 STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 93 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
+-+.+.-+++|++.|-.|+... +...|+-.|.+.+|.++|.+ .|.. |.-+.+|.....++.|.++...
T Consensus 616 ~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~---~G~e------nRAlEmyTDlRMFD~aQE~~~~ 683 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR---SGHE------NRALEMYTDLRMFDYAQEFLGS 683 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH---cCch------hhHHHHHHHHHHHHHHHHHhhc
Confidence 3345555678888888888764 34457778888888888753 4433 3456777777777777776654
Q ss_pred cCCC--------------ChhHHHHHHHHHHHcCChHHHHHHHHH-----H-HHcCC---CCCHHHHHHHHHHHhcCCCH
Q 038542 173 MNGR--------------TIVSWTSVIAGLAMHGRGLEAVALFEE-----M-LEAGV---PPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 173 ~~~~--------------~~~~~~~li~~~~~~g~~~~A~~l~~~-----m-~~~g~---~p~~~t~~~ll~~~~~~g~~ 229 (475)
-... |+.-=.+....+...|+.++|..+.-+ | .+-+- ..+..+...+...+-+...+
T Consensus 684 g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 684 GDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred CChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 3211 111111223344556666666554322 1 11111 23344555556666667778
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCCCHHH-----------HHHHHHHHHhcCCH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IEANPII-----------WRTLISACCARGEL 297 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p~~~~-----------~~~li~~~~~~g~~ 297 (475)
..|-++|..|-. ...++++....+++++|..+-++.| +.||+.. +...-.+|.+.|+-
T Consensus 764 gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~ 833 (1081)
T KOG1538|consen 764 GLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQ 833 (1081)
T ss_pred chHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcch
Confidence 888888888764 2467888888999999999888883 4444321 11223455666666
Q ss_pred HHHHHHHHHHH
Q 038542 298 KLAESITKRLI 308 (475)
Q Consensus 298 ~~a~~~~~~~~ 308 (475)
.+|.++++++.
T Consensus 834 ~EA~~vLeQLt 844 (1081)
T KOG1538|consen 834 REAVQVLEQLT 844 (1081)
T ss_pred HHHHHHHHHhh
Confidence 66666666654
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00096 Score=46.53 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=51.5
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCC
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG-ELKLAESITKRLIGNEP 312 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~p 312 (475)
++..|..+...+...|++++|...|++. ...| +...|..+..++...| ++++|.+.+++.++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566777888888888888888888877 4444 5677888888888888 68999999988888776
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0043 Score=50.55 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=76.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChh
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 332 (475)
...-+-..|++++|..+|+-+ -..| +..-|..|...+-..++++.|...+.....++++|+..+.....+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999887 2223 56678888888889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 038542 333 KKTKIREVMDK 343 (475)
Q Consensus 333 ~a~~~~~~m~~ 343 (475)
.|...|....+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999988765
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00074 Score=46.93 Aligned_cols=53 Identities=26% Similarity=0.386 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 262 SGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 262 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
.|++++|.++|+++ ...| +...+..+..+|...|++++|..+++++....|++
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44444555444444 2222 44444445555555555555555555555554443
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.025 Score=56.38 Aligned_cols=134 Identities=15% Similarity=0.130 Sum_probs=95.8
Q ss_pred CCCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHc--------CCHHHHHHHHH
Q 038542 208 GVPPDDVAFVGLLSACSHC-----GLVDKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRS--------GRVKEAHEFIQ 273 (475)
Q Consensus 208 g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 273 (475)
+.+.|...|...+++.... +..+.|..+|++..+ ..|+ ...|..+..++... .++..+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3466778888888875442 236788888888885 3555 34455444433221 12344555555
Q ss_pred hC---C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 274 KM---P-IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 274 ~m---~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+. + ...+...|.++.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++....+
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 43 1 233567788887777788999999999999999999 57899999999999999999999998876543
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.41 Score=48.29 Aligned_cols=321 Identities=14% Similarity=0.114 Sum_probs=181.8
Q ss_pred ccCCCCCCcchHHH-----HHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC--CCHHHHHHHHhccCC
Q 038542 2 LEYGVSPNKFTYPF-----VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE--GGIELGRKVFDEMSE 74 (475)
Q Consensus 2 ~~~g~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g--g~~~~A~~~f~~~~~ 74 (475)
.+-|++.+..-|.. ++.-+...+.+..|.|+-..+...-... ..++.....-+.+.. .+.+.+..+=+++..
T Consensus 424 ~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 424 VRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred cccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 34566555544443 4555556677777877776664221111 566666666666652 133444555555555
Q ss_pred --CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC------
Q 038542 75 --RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC----PDEITMVTVLSACTDLGALEVGKWVESFIEKQM------ 142 (475)
Q Consensus 75 --~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~----p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 142 (475)
..-++|..+.+---..|+++-|..+++.=...+.. .+-.-+...+.-+...|+.+...++.-.+.+.-
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~ 582 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLF 582 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH
Confidence 45678888888888889999888877643332211 122234556666777888877776666554321
Q ss_pred -----CCCCccHHHHHHH--------HHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCCh---HHH--
Q 038542 143 -----VNRSVGLCNALID--------MFAKCGDVDKALKLFRSMN-------GRTIVSWTSVIAGLAMHGRG---LEA-- 197 (475)
Q Consensus 143 -----~~~~~~~~~~li~--------~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~---~~A-- 197 (475)
.+....+|.-++. .+...++-..+...|..=. ..-.........++.+.... ++|
T Consensus 583 ~~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~e 662 (829)
T KOG2280|consen 583 MTLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALE 662 (829)
T ss_pred HHHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHH
Confidence 1112222222221 0011122122222111000 01111222233444444331 111
Q ss_pred -----HHHHHHHHH-cCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 198 -----VALFEEMLE-AGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 198 -----~~l~~~m~~-~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
+.+.+.+.. .|......|.+--+.-+...|+..+|.++-.+.+ -||-..|-.-+.+++..+++++-+++
T Consensus 663 d~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekf 737 (829)
T KOG2280|consen 663 DQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKF 737 (829)
T ss_pred HHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHH
Confidence 122222221 2333444455566667777888888888766544 37888888888899999999998888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 038542 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 272 ~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
-+... .+.-|.-+..+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.++--
T Consensus 738 Akskk---sPIGy~PFVe~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 738 AKSKK---SPIGYLPFVEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HhccC---CCCCchhHHHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHH
Confidence 88773 134456678889999999999888865422 2256788899999998887653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0063 Score=54.88 Aligned_cols=94 Identities=14% Similarity=0.071 Sum_probs=64.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---chHHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMHE---SNYVLL 321 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l 321 (475)
..|...+..+.+.|++++|...|+.. ...|+ ...+..+..+|...|+++.|...|+.+.+..|+++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555556667777777777776 22332 24555677778888888888888888887766543 345556
Q ss_pred HHHHHhccChhHHHHHHHHHHh
Q 038542 322 SHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+.+|...|++++|.++++.+.+
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~ 245 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIK 245 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH
Confidence 6777788888888888877765
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.15 Score=42.37 Aligned_cols=132 Identities=14% Similarity=0.089 Sum_probs=97.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC-CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHH
Q 038542 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI-IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA---NPII 283 (475)
Q Consensus 209 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~ 283 (475)
..|+..--..|..+....|+..+|...|.+... |+ .-|....-.+.++....+++.+|...+++. ...| ++.+
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals--G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS--GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc--cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 457777677788888899999999999988887 54 456677777788888889999998888887 1112 2334
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
-..+...+...|.+..|+..|+.+....|. +..-......+.++|+.+++..-+..+.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 455778888999999999999999988774 34445556677888887777665555443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.31 Score=45.33 Aligned_cols=282 Identities=20% Similarity=0.163 Sum_probs=182.3
Q ss_pred HHHHHHHHHhCC-CCHHHHHHHHhccC---CCChhHHHHHHHH--HHHcCChhHHHHHHHHHHHCCCCCCHH--HHHHHH
Q 038542 48 QNTLVHMYGSCE-GGIELGRKVFDEMS---ERDSVSWSAMIGG--YARLGLSTDAIDLFRQMQISGVCPDEI--TMVTVL 119 (475)
Q Consensus 48 ~~~li~~~~~~g-g~~~~A~~~f~~~~---~~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~p~~~--t~~~ll 119 (475)
|.+|-.++.-.| |+-..|++.-.+-. ..|....-.++.+ -.-.|+++.|.+-|+.|... |... -+..|.
T Consensus 85 yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLy 161 (531)
T COG3898 85 YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLY 161 (531)
T ss_pred HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHH
Confidence 444444443322 37777877765543 2344444444433 34569999999999999862 3322 233344
Q ss_pred HHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCChh--HHHHHHHHHHH--
Q 038542 120 SACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-----GRTIV--SWTSVIAGLAM-- 190 (475)
Q Consensus 120 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~~~-- 190 (475)
-...+.|+.+.|.++-+..-.... .-...+.+++...+..|+|+.|+++.+.-. ++|+. .-..|+.+-+.
T Consensus 162 leAqr~GareaAr~yAe~Aa~~Ap-~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ 240 (531)
T COG3898 162 LEAQRLGAREAARHYAERAAEKAP-QLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSL 240 (531)
T ss_pred HHHHhcccHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHH
Confidence 445678899988888877765532 245577889999999999999999998654 34442 22233333221
Q ss_pred -cCChHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 191 -HGRGLEAVALFEEMLEAGVPPDDVA-FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 191 -~g~~~~A~~l~~~m~~~g~~p~~~t-~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
.-+...|...-.+..+ +.||..- -..-..++.+.|++.++-.+++.+-+. .|.+..+.. ..+.+.|+. +
T Consensus 241 ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~l--Y~~ar~gdt--a 311 (531)
T COG3898 241 LDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALL--YVRARSGDT--A 311 (531)
T ss_pred hcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHH--HHHhcCCCc--H
Confidence 2345556555554444 5677543 234457889999999999999999864 455443332 223455543 3
Q ss_pred HHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH-hccChhHHHHHHHHHH
Q 038542 269 HEFIQKM----PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA-KLLRWEKKTKIREVMD 342 (475)
Q Consensus 269 ~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~-~~g~~~~a~~~~~~m~ 342 (475)
.+-+++. .++| +..+..++..+-...|++..|..-.+.+....|. ...|..|.++-. ..|+-.++.+.+.+-.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlAqav 390 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLAQAV 390 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHHHHh
Confidence 2222222 3445 5677777888889999999999999999888885 578888888764 4499888888876554
Q ss_pred h
Q 038542 343 K 343 (475)
Q Consensus 343 ~ 343 (475)
+
T Consensus 391 ~ 391 (531)
T COG3898 391 K 391 (531)
T ss_pred c
Confidence 4
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.015 Score=45.28 Aligned_cols=82 Identities=16% Similarity=0.059 Sum_probs=40.5
Q ss_pred HHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCchHHHHHHHHHhcc
Q 038542 258 MLCRSGRVKEAHEFIQKM---PIEAN--PIIWRTLISACCARGELKLAESITKRLIGNEPM---HESNYVLLSHIYAKLL 329 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g 329 (475)
++-..|+.++|..+|++. +.... ...+-.+..++...|++++|..++++.....|+ +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 344455555555555544 22211 223334455555556666666666555555444 3333444444555556
Q ss_pred ChhHHHHHHH
Q 038542 330 RWEKKTKIRE 339 (475)
Q Consensus 330 ~~~~a~~~~~ 339 (475)
++++|...+-
T Consensus 90 r~~eAl~~~l 99 (120)
T PF12688_consen 90 RPKEALEWLL 99 (120)
T ss_pred CHHHHHHHHH
Confidence 6666555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.029 Score=44.72 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=77.5
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch-HHHHHHHHHhcc
Q 038542 256 VDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN-YVLLSHIYAKLL 329 (475)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-~~~l~~~~~~~g 329 (475)
.....+.|++++|.+.|+.+ |..| ....-..|+.++.+.+++++|...+++.+++.|.++.+ |.....+++...
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~~ 96 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYYE 96 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHH
Confidence 34455778999999998888 3333 44556678999999999999999999999999988763 555555554433
Q ss_pred ChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccC
Q 038542 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPT 396 (475)
Q Consensus 330 ~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd 396 (475)
..+.. +..+ ...+.......+++..|++++..-.+.-|.||
T Consensus 97 ~~~~~---~~~~-----------------------~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~d 137 (142)
T PF13512_consen 97 QDEGS---LQSF-----------------------FRSDRDPTPARQAFRDFEQLVRRYPNSEYAAD 137 (142)
T ss_pred HhhhH---Hhhh-----------------------cccccCcHHHHHHHHHHHHHHHHCcCChhHHH
Confidence 22211 1111 11223334577888888888877666655554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.19 Score=41.71 Aligned_cols=56 Identities=9% Similarity=0.008 Sum_probs=23.9
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
.+..+....|+..+|...|++....-+..|..+.-.+.++....++...|...+++
T Consensus 94 rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~ 149 (251)
T COG4700 94 RLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLED 149 (251)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34444444444444444444444333333443444444444444444444444443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.021 Score=46.69 Aligned_cols=62 Identities=21% Similarity=0.236 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+...++..+...|+++.|...++++...+|.+...|..++.+|...|+...|.++++.+.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 35566778888999999999999999999999999999999999999999999999998853
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.16 Score=50.67 Aligned_cols=131 Identities=13% Similarity=0.037 Sum_probs=60.9
Q ss_pred HHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC-CCCCCH--HHHHH--H--HHHHhccCChHHHHHH
Q 038542 62 IELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-GVCPDE--ITMVT--V--LSACTDLGALEVGKWV 134 (475)
Q Consensus 62 ~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~--~t~~~--l--l~~~~~~~~~~~a~~~ 134 (475)
+++|.+..+.- |-+..|..+...-.+.-.++-|...|-+.... |++.-. .|..+ + ....+--|.+++|+++
T Consensus 679 ledA~qfiEdn--PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~ 756 (1189)
T KOG2041|consen 679 LEDAIQFIEDN--PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKL 756 (1189)
T ss_pred hHHHHHHHhcC--CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhh
Confidence 45555554442 34456666665555555555555555444321 221100 00000 0 0111224566666666
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--C---hhHHHHHHHHHHHcCChHHHHHHHHH
Q 038542 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR--T---IVSWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~---~~~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
+-.+-+.. .-|.++.+.|||-...++++.-... | ..+|+.+...++....+++|.+.|..
T Consensus 757 yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~ 821 (1189)
T KOG2041|consen 757 YLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSY 821 (1189)
T ss_pred hhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65554332 2356666667776666666543221 1 13455555555555555555555443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.38 Score=43.03 Aligned_cols=65 Identities=11% Similarity=-0.024 Sum_probs=41.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHhccCChHHHHHHHHHHHHcC
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI-TM---VTVLSACTDLGALEVGKWVESFIEKQM 142 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~---~~ll~~~~~~~~~~~a~~~~~~~~~~~ 142 (475)
+...+-.....+.+.|++++|.+.|+++... -|+.. .- -.+..++.+.++++.|...++..++..
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~ 99 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN 99 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 4444445566667778888888888888764 33322 21 234455677777888887777777654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00098 Score=38.85 Aligned_cols=32 Identities=22% Similarity=0.325 Sum_probs=29.9
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 304 TKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 304 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
++++++.+|+++.+|..|..+|...|++++|.
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 67889999999999999999999999999986
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.0062 Score=42.89 Aligned_cols=62 Identities=15% Similarity=0.236 Sum_probs=49.9
Q ss_pred HHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 257 DMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
..|.+.+++++|.+.++.+ ...| ++..|......+...|++++|.+.+++..+..|+++...
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 4678888888888888887 4445 567777888888999999999999999999988765443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.23 Score=49.04 Aligned_cols=217 Identities=14% Similarity=0.126 Sum_probs=112.9
Q ss_pred HHHHHHHHHcCCCcHHHHHH--HHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHc
Q 038542 13 YPFVLKACAGIGDLNLGKSV--HGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90 (475)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~--~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 90 (475)
++..=++|.+.++..--+-+ ++++.++|-.|+... +...++-.| .+.+|-++|.+ +
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~g-KF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQG-KFHEAAKLFKR------------------S 658 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhh-hHHHHHHHHHH------------------c
Confidence 34444555555554433222 344555665566543 334444556 78888887754 4
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHH-
Q 038542 91 GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL- 169 (475)
Q Consensus 91 g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~- 169 (475)
|....|+++|..|+-. -...-+...|..++-+.+.++-.+.. .++.--.+-..++..+|+.++|..+
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~ 726 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEIC 726 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhh
Confidence 4455555555555421 11222333444443333332221110 0110112233444555555555544
Q ss_pred ------------HHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 038542 170 ------------FRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237 (475)
Q Consensus 170 ------------~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 237 (475)
-.++...+..+...+..-+.+...+.-|-++|.+|-.. ..+++.....+++++|..+-+
T Consensus 727 ~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe 797 (1081)
T KOG1538|consen 727 GDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAE 797 (1081)
T ss_pred hcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhh
Confidence 33333334455555555566667778888888887542 357778888999999998877
Q ss_pred HhhhhcCCCCChhH-H----------HHHHHHHHHcCCHHHHHHHHHhC
Q 038542 238 SMKNDFGIIPKIEH-Y----------GCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 238 ~m~~~~~~~p~~~~-~----------~~li~~~~~~g~~~~A~~~~~~m 275 (475)
..-+ ..||+.. | .-.-.+|.++|+-.||.++++++
T Consensus 798 ~hPe---~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 798 KHPE---FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hCcc---ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 6553 3444321 1 11223455666666666666655
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.003 Score=39.39 Aligned_cols=42 Identities=21% Similarity=0.340 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
.+|..+..+|...|++++|+++++++++..|+++..+..|..
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 467888999999999999999999999999999888776653
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.01 Score=56.47 Aligned_cols=97 Identities=18% Similarity=0.154 Sum_probs=58.9
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANP----IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
+...++.+..+|.+.|++++|...|++. .+.|+. .+|..+..+|...|+.++|...++++++..+. .|..+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~---~f~~i~ 150 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNL---KFSTIL 150 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcch---hHHHHH
Confidence 4566777777777777777777777774 555643 34777777777777777777777777776321 121111
Q ss_pred H--HHHhccChhHHHHHHHHHHhCCCc
Q 038542 323 H--IYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 323 ~--~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
. .+....+.++..++++...+.|..
T Consensus 151 ~DpdL~plR~~pef~eLlee~rk~G~~ 177 (453)
T PLN03098 151 NDPDLAPFRASPEFKELQEEARKGGED 177 (453)
T ss_pred hCcchhhhcccHHHHHHHHHHHHhCCc
Confidence 1 111223344666666666666643
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.049 Score=49.15 Aligned_cols=101 Identities=9% Similarity=0.107 Sum_probs=60.8
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLI 288 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li 288 (475)
.|...+....+.|++++|...|+.+.+.+.-.+ ....+..+..+|...|++++|...|+.+ +..| ....+..+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444434445666666666666665321111 1234556666666777777777766666 2222 244455566
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
..+...|+.+.|...++++++..|.+.
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 667778888888888888888888754
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.037 Score=43.62 Aligned_cols=51 Identities=10% Similarity=0.163 Sum_probs=34.9
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 038542 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259 (475)
Q Consensus 209 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (475)
..|+..+..+++.+|+..|++..|.++++...+.|+++-+...|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 456777777777777777777777777777777677666666666666543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.19 Score=45.26 Aligned_cols=103 Identities=15% Similarity=0.074 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc---CCHHHHHHHHHhC-CCCC-CHHHH
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS---GRVKEAHEFIQKM-PIEA-NPIIW 284 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m-~~~p-~~~~~ 284 (475)
+-|...|..|..+|...|+.+.|..-|....+ -..+++..+..+..++... ....++..+|+++ ...| |+.+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHH
Confidence 45667777788888888888888887777765 3334555555555554432 2345677888877 4455 56666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 285 RTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 285 ~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
.-|...+...|++.+|...|+.|++..|.+
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 667778888889999999999888888765
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.52 Score=40.90 Aligned_cols=181 Identities=12% Similarity=0.011 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCP--DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
.+-.....+.+.|++.+|.+.|+++...-... -....-.+..++-+.|+++.|...++..++.-......-+...+.+
T Consensus 7 ~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 7 ALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 33444556667777777777777776542111 1223344556666777777777777776665322111112211111
Q ss_pred HHhcCCHHHHHHHHHhcCCCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 157 FAKCGDVDKALKLFRSMNGRTI-------VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
.+........ + ...+|. ..+..++.-|=.+....+|...+..+... .-.. -..+..-|.+.|.+
T Consensus 87 ~~~~~~~~~~---~--~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~-e~~ia~~Y~~~~~y 157 (203)
T PF13525_consen 87 LSYYKQIPGI---L--RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEH-ELYIARFYYKRGKY 157 (203)
T ss_dssp HHHHHHHHHH---H---TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHH-HHHHHHHHHCTT-H
T ss_pred HHHHHhCccc---h--hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHH-HHHHHHHHHHcccH
Confidence 1111111111 0 111111 23444555555555555555544444331 0011 11245566777777
Q ss_pred HHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHcCCHHHH
Q 038542 230 DKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A 268 (475)
..|..-++.+.+.+.-.+. ......++.+|.+.|..+.|
T Consensus 158 ~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 158 KAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 7777777777764322221 13445556666666665533
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.39 Score=42.27 Aligned_cols=232 Identities=14% Similarity=0.077 Sum_probs=131.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-hccCC-hH-HHHHHHHHHHHcCCCCCccHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC-TDLGA-LE-VGKWVESFIEKQMVNRSVGLCNA 152 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~-~~-~a~~~~~~~~~~~~~~~~~~~~~ 152 (475)
....|+.-+.++++....++|..=+.-..+.. .||.. |...=..+ .+.|. +. ..+.+|..+... .|+ -++.
T Consensus 68 ~lq~wT~r~~~l~kLR~~~~a~~EL~~f~~lD-~pdl~-Yey~p~iyp~rrGSmVPFsmR~lhAe~~~~--lgn--pqes 141 (366)
T KOG2796|consen 68 SLQLWTVRLALLVKLRLFQNAEMELEPFGNLD-QPDLY-YEYYPHVYPGRRGSMVPFSMRILHAELQQY--LGN--PQES 141 (366)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHhhhhhhccCC-Cccee-eeeccccCCCCcCccccHHHHHHHHHHHHh--cCC--cHHH
Confidence 34567777888888888888776655554432 22211 00000000 11221 11 123334444332 122 2456
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC--CCh--------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038542 153 LIDMFAKCGDVDKALKLFRSMNG--RTI--------VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222 (475)
Q Consensus 153 li~~y~~~g~~~~A~~~~~~~~~--~~~--------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 222 (475)
|...|.-..-+++-...|+.-.. ..+ ..-+.++..+.-.|.+.-.+.++++.++...+.+......|.+.
T Consensus 142 LdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~ 221 (366)
T KOG2796|consen 142 LDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRI 221 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHH
Confidence 66666655445555555543322 222 23355666666677777888888888887666677778888888
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHH-----HHHHHcCCHHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhcC
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMV-----DMLCRSGRVKEAHEFIQKMPIE-A-NPIIWRTLISACCARG 295 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~-p-~~~~~~~li~~~~~~g 295 (475)
-.+.|+.+.|..+|+...+. .-+.+..+.+.++ ..|.-++++.+|...+++.+.. | |+..-|+=.-...-.|
T Consensus 222 ~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg 300 (366)
T KOG2796|consen 222 SMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLG 300 (366)
T ss_pred HHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHH
Confidence 88889999999998877764 3333333333333 3455567777888888777322 2 3333333222333457
Q ss_pred CHHHHHHHHHHHHhCCCCC
Q 038542 296 ELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~ 314 (475)
+...|.+..+.+.+..|..
T Consensus 301 ~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 301 KLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHHHHHHHhccCCcc
Confidence 7778888888888777654
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.8 Score=42.74 Aligned_cols=208 Identities=12% Similarity=0.066 Sum_probs=132.1
Q ss_pred CHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHh---ccCChHHH
Q 038542 61 GIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISG-VCPDEI--TMVTVLSACT---DLGALEVG 131 (475)
Q Consensus 61 ~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~--t~~~ll~~~~---~~~~~~~a 131 (475)
+.+.|...-++..+ | =.-.|.+.+...+..|+++.|+++.+.-+... +.++.. .-..|+.+-. -..+...|
T Consensus 169 areaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 169 AREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred cHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 55555554444332 1 23467889999999999999999998776543 344433 2233443321 12244555
Q ss_pred HHHHHHHHHcCCCCCccH-HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc-CC
Q 038542 132 KWVESFIEKQMVNRSVGL-CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA-GV 209 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~-~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~ 209 (475)
...-.+..| +.|+..- --.-..++.+.|++.++-.+++.+-+.....- +...|....-.+.++.-+++.... .+
T Consensus 249 r~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~--ia~lY~~ar~gdta~dRlkRa~~L~sl 324 (531)
T COG3898 249 RDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPD--IALLYVRARSGDTALDRLKRAKKLESL 324 (531)
T ss_pred HHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChH--HHHHHHHhcCCCcHHHHHHHHHHHHhc
Confidence 555555444 4555432 22334788999999999999998864333221 223444444444555555554332 25
Q ss_pred CCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH-cCCHHHHHHHHHhC
Q 038542 210 PPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR-SGRVKEAHEFIQKM 275 (475)
Q Consensus 210 ~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~~A~~~~~~m 275 (475)
+|| ......+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+-+.
T Consensus 325 k~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 325 KPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred CccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 665 4566677888888999988887666655 558888899988887665 49999999998877
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.13 Score=40.09 Aligned_cols=140 Identities=17% Similarity=0.198 Sum_probs=82.8
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
.-.|..++..++..+.... .+..-++.++.-....-+-+-..++++.+-+-+.+. .+|++...
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis--------------~C~NlKrV 75 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDIS--------------KCGNLKRV 75 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GG--------------G-S-THHH
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCch--------------hhcchHHH
Confidence 3456777777777776653 244555555544444444444555555544422222 23333333
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 269 HEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 269 ~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
...+-.++ .+.......++++..+|+-|.-.+++..+.+.+..++....-+..+|.+.|+..++.+++.+.-++|++
T Consensus 76 i~C~~~~n--~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 76 IECYAKRN--KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHTT-----HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 33333332 234455667888999999999999999998766667888999999999999999999999999999975
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.54 Score=40.78 Aligned_cols=49 Identities=22% Similarity=0.155 Sum_probs=38.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHhccChhHHH
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHES---NYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~ 335 (475)
+..-|.+.|.+..|..-++.+++.-|+... +...++.+|.+.|..+.+.
T Consensus 147 ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 147 IARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 456688999999999999999999887644 4567888999999888544
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.062 Score=42.35 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=58.1
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~ 291 (475)
|..++..++.++++.|+++....+++.. +|+.++...-. +. +-..-+..|+..+..+++.+|
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~---------~~------~~~~spl~Pt~~lL~AIv~sf 62 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKE---------GD------YPPSSPLYPTSRLLIAIVHSF 62 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcccc---------Cc------cCCCCCCCCCHHHHHHHHHHH
Confidence 4567778888888888888877777544 35444321100 00 011115667777777777777
Q ss_pred HhcCCHHHHHHHHHHHHhCC--CCCCchHHHHHHHH
Q 038542 292 CARGELKLAESITKRLIGNE--PMHESNYVLLSHIY 325 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~ 325 (475)
+..|++..|.++.+...+.- |.+...|..|++-.
T Consensus 63 ~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 63 GYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 77777777777777776654 23334555555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.01 Score=42.39 Aligned_cols=24 Identities=17% Similarity=0.175 Sum_probs=11.3
Q ss_pred hHHHHHHHHHhccChhHHHHHHHH
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
++..++.+|...|++++|.+.+++
T Consensus 48 ~~~~lg~~~~~~g~~~~A~~~~~~ 71 (78)
T PF13424_consen 48 TLNNLGECYYRLGDYEEALEYYQK 71 (78)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444444555444444443
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.063 Score=50.11 Aligned_cols=64 Identities=11% Similarity=-0.033 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..++..|...+.+.+++..|++...+.++.+|+|..+...-..+|...|+++.|+..|+++.+.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3466778888899999999999999999999999999999999999999999999999998863
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.058 Score=47.68 Aligned_cols=110 Identities=19% Similarity=0.188 Sum_probs=86.0
Q ss_pred HHHHHHHhcC--CCChhHHHHHHHHHHHc-----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----------
Q 038542 165 KALKLFRSMN--GRTIVSWTSVIAGLAMH-----GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG---------- 227 (475)
Q Consensus 165 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g---------- 227 (475)
..++.|...+ ++|..+|-+++..|... +..+=....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 67888888888888654 566777778899999999999999999998875532
Q ss_pred ------CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCH-HHHHHHHHhC
Q 038542 228 ------LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV-KEAHEFIQKM 275 (475)
Q Consensus 228 ------~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m 275 (475)
+-+-++.++++|.. +|+.||-++-..|++++++.+-. .+..++.-.|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 33457899999998 69999999999999999998864 3444554444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.04 E-value=2.1 Score=45.87 Aligned_cols=25 Identities=12% Similarity=0.332 Sum_probs=17.1
Q ss_pred HHHHHHHHHcC--ChhHHHHHHHHHHH
Q 038542 81 SAMIGGYARLG--LSTDAIDLFRQMQI 105 (475)
Q Consensus 81 ~~li~~~~~~g--~~~~A~~~~~~m~~ 105 (475)
-.+|.+|++.+ ..++|+....+...
T Consensus 794 ~~ilTs~vk~~~~~ie~aL~kI~~l~~ 820 (1265)
T KOG1920|consen 794 LFILTSYVKSNPPEIEEALQKIKELQL 820 (1265)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHHHh
Confidence 35677788777 66677777666664
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.088 Score=42.93 Aligned_cols=70 Identities=23% Similarity=0.317 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh----hcCCCCChhH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN----DFGIIPKIEH 251 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 251 (475)
...++..+...|++++|+.+.+.+.... +-|...|..++.++...|+...|.++|+.+.+ ++|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 3445555666677777777777666653 44566667777777777777777766665542 3466666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.011 Score=42.20 Aligned_cols=60 Identities=15% Similarity=0.189 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-------P-IEAN-PIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-------~-~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
..+|+.+...|.+.|++++|++.|++. + ..|+ ..++..+...+...|++++|.+.+++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357888999999999999999999887 2 1233 5678889999999999999999999865
|
... |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.96 E-value=2.2 Score=43.34 Aligned_cols=243 Identities=15% Similarity=0.100 Sum_probs=145.2
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHhccCCC--------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCC---------
Q 038542 45 IHVQNTLVHMYGSCEGGIELGRKVFDEMSER--------DSVSWSAMIGGYARLGLSTDAIDLFRQMQISG--------- 107 (475)
Q Consensus 45 ~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--------- 107 (475)
..+|..+..--..+| +.+.|..+.+.=+.. +..-+..-+.-..+.|+++-...++..+.+.-
T Consensus 507 ~iSy~~iA~~Ay~~G-R~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l 585 (829)
T KOG2280|consen 507 GISYAAIARRAYQEG-RFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTL 585 (829)
T ss_pred ceeHHHHHHHHHhcC-cHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666777 999999988764431 33445566677777888888777777665421
Q ss_pred -CCC-CHHHHHHHHH---------HHhccCChHHHHHHHHHH---HHcCCCCCccHHHHHHHHHHhcCCHHHH-------
Q 038542 108 -VCP-DEITMVTVLS---------ACTDLGALEVGKWVESFI---EKQMVNRSVGLCNALIDMFAKCGDVDKA------- 166 (475)
Q Consensus 108 -~~p-~~~t~~~ll~---------~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~~~~li~~y~~~g~~~~A------- 166 (475)
..| ....|.-+++ .|-...+......++-+- .+. +.+-........+.+.+.....-.
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~-~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~ 664 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAET-IEGRIPALKTAANAFAKSKEKSFEAKALEDQ 664 (829)
T ss_pred HhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhh-hcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 011 1112222222 111122222222222111 011 122222333445555554442211
Q ss_pred ---HHHHHhcCCC-----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038542 167 ---LKLFRSMNGR-----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238 (475)
Q Consensus 167 ---~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 238 (475)
..+++.+... .--+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..+++++-+++-++
T Consensus 665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks 740 (829)
T KOG2280|consen 665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS 740 (829)
T ss_pred HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence 1222222211 11244555666778899999998877764 58888888889999999999988876665
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
++. +.-|.-.+..+.+.|+.+||.+.+-+.+-.+ -...+|.+.|++.+|.+..-+
T Consensus 741 kks-------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l~------ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 741 KKS-------PIGYLPFVEACLKQGNKDEAKKYIPRVGGLQ------EKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred cCC-------CCCchhHHHHHHhcccHHHHhhhhhccCChH------HHHHHHHHhccHHHHHHHHHH
Confidence 543 4456678889999999999999999884332 456778888999888776644
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.65 Score=37.44 Aligned_cols=88 Identities=13% Similarity=0.156 Sum_probs=55.9
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHc
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 90 (475)
.....++..+...+.+.....+++.+.+.+ ..+...++.++..|++.. .....+.+.. ..+.......++.|.+.
T Consensus 8 ~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--~~~ll~~l~~--~~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 8 IDVSEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--PQKEIERLDN--KSNHYDIEKVGKLCEKA 82 (140)
T ss_pred CCHHHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--HHHHHHHHHh--ccccCCHHHHHHHHHHc
Confidence 344567777777778888888888888776 467778888888888754 4445555542 12233334455555555
Q ss_pred CChhHHHHHHHHH
Q 038542 91 GLSTDAIDLFRQM 103 (475)
Q Consensus 91 g~~~~A~~~~~~m 103 (475)
+.++++.-++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 6555555555554
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.75 E-value=1.2 Score=38.82 Aligned_cols=85 Identities=15% Similarity=0.024 Sum_probs=49.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCCchHHH
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKMP-------IEANP-IIWRTLISACCARGELKLAESITKRLIGN----EPMHESNYVL 320 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~-------~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~p~~~~~~~~ 320 (475)
...-..|.+..++++|-..|.+-+ -.|+. ..|...|-.+.-..++..|++.++.--+. +|.+..+...
T Consensus 154 gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~len 233 (308)
T KOG1585|consen 154 GKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLEN 233 (308)
T ss_pred HHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHH
Confidence 334445666667766665555441 11222 23444455555666788888888775443 2555666777
Q ss_pred HHHHHHhccChhHHHHHH
Q 038542 321 LSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~ 338 (475)
|+.+| ..|+.+++.++.
T Consensus 234 LL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 234 LLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHh-ccCCHHHHHHHH
Confidence 77776 456777766554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.079 Score=50.64 Aligned_cols=63 Identities=14% Similarity=0.048 Sum_probs=50.7
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI----EHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
+.+...++.+..+|...|++++|...|+...+ +.|+. ..|..+..+|...|++++|...+++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567888888899999999999999988775 35553 34888888999999999999888887
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.65 E-value=1.6 Score=39.37 Aligned_cols=168 Identities=11% Similarity=0.047 Sum_probs=110.3
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC
Q 038542 165 KALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG 244 (475)
Q Consensus 165 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~ 244 (475)
...+++++...+....--.-.......|+..+|..+|....... +-+...-..+..+|...|+.+.|..++..+-.+ -
T Consensus 121 qlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~ 198 (304)
T COG3118 121 QLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-A 198 (304)
T ss_pred HHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCccc-c
Confidence 44455555544422222223345677899999999999888763 233445567888899999999999999887653 1
Q ss_pred CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCchHHHH
Q 038542 245 IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAESITKRLIGNE--PMHESNYVLL 321 (475)
Q Consensus 245 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~--p~~~~~~~~l 321 (475)
-.........-|..+.+.....+...+-++..-.| |...-..+...+...|+.+.|.+.+-.+++.+ -.+...-..|
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~l 278 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTL 278 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHH
Confidence 11112222344566677666666666666664456 67777778888889999999988777776554 4455677788
Q ss_pred HHHHHhccChhHH
Q 038542 322 SHIYAKLLRWEKK 334 (475)
Q Consensus 322 ~~~~~~~g~~~~a 334 (475)
+..+.-.|.-+.+
T Consensus 279 le~f~~~g~~Dp~ 291 (304)
T COG3118 279 LELFEAFGPADPL 291 (304)
T ss_pred HHHHHhcCCCCHH
Confidence 8888777744443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.086 Score=49.13 Aligned_cols=126 Identities=13% Similarity=-0.001 Sum_probs=78.3
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHH----cCC-CCCccHHHHHHHHHHhcCCHHHHHHHHHhc-------CCCC--hhH
Q 038542 115 MVTVLSACTDLGALEVGKWVESFIEK----QMV-NRSVGLCNALIDMFAKCGDVDKALKLFRSM-------NGRT--IVS 180 (475)
Q Consensus 115 ~~~ll~~~~~~~~~~~a~~~~~~~~~----~~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~-------~~~~--~~~ 180 (475)
|..+-+.|.-.|+++.|...|+.-.. -|- ......+..|.++|.-.|+++.|.+.|+.. ..+. ..+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQs 277 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQS 277 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHH
Confidence 44444444556778888777765432 121 112345666778888888888888777643 2332 245
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHH----cC-CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLE----AG-VPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~----~g-~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
.-+|...|.-...+++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.+...
T Consensus 278 cYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 278 CYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 55677777777778888887766432 11 12234567788888888888888877665544
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.95 Score=36.47 Aligned_cols=42 Identities=21% Similarity=0.090 Sum_probs=20.6
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
.++..+...+.......+++.+.+.+ ..+....+.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence 34444444455555555555555444 2344455555555544
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.54 E-value=2.3 Score=40.34 Aligned_cols=31 Identities=19% Similarity=0.094 Sum_probs=24.2
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 211 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
.|-..+.+++.++.-.|+.+.|.+..+.|.+
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~ 333 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFK 333 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhh
Confidence 4556667778888888888888888888876
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.12 Score=45.83 Aligned_cols=89 Identities=21% Similarity=0.301 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CchHHHH
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM-------PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH---ESNYVLL 321 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l 321 (475)
|+.-++.| +.|++.+|..-|... ...||..-| |..++...|+++.|..+|..+.+..|++ +..+.-|
T Consensus 145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yW--LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYW--LGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHH--HHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 44444333 445566666655554 223333333 6666666777777777776666654433 3445556
Q ss_pred HHHHHhccChhHHHHHHHHHHh
Q 038542 322 SHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+..+.|+.++|..+++.+.+
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666777777777666654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.38 E-value=2.7 Score=40.24 Aligned_cols=316 Identities=13% Similarity=0.074 Sum_probs=170.4
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCC----CChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHc
Q 038542 15 FVLKACAGIGDLNLGKSVHGAVLKFQFG----DDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARL 90 (475)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~----~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~ 90 (475)
..+......|.+.+|+.+++.+...=++ =++.+||.++-++++.= +-++ -+.+...=..-|.-||..|.+.
T Consensus 133 i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSY--fLEl---~e~~s~dl~pdyYemilfY~kk 207 (549)
T PF07079_consen 133 IEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSY--FLEL---KESMSSDLYPDYYEMILFYLKK 207 (549)
T ss_pred HHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHH--HHHH---HHhcccccChHHHHHHHHHHHH
Confidence 3456677889999999999888765433 67888998888887643 1111 1111111111233333333221
Q ss_pred C-------------------------------ChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHH
Q 038542 91 G-------------------------------LSTDAIDLFRQMQISGVCPDEI-TMVTVLSACTDLGALEVGKWVESFI 138 (475)
Q Consensus 91 g-------------------------------~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~ 138 (475)
= +..--++++....+.-+.|+.. ....+...+.+ +.+++..+.+.+
T Consensus 208 i~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~i 285 (549)
T PF07079_consen 208 IHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAI 285 (549)
T ss_pred HHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHH
Confidence 1 1111122222223333445433 22333333333 555555555554
Q ss_pred HHcCCCC----CccHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChh-------HHHHHHHHHH----HcCChHHHHHHH
Q 038542 139 EKQMVNR----SVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIV-------SWTSVIAGLA----MHGRGLEAVALF 201 (475)
Q Consensus 139 ~~~~~~~----~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~-------~~~~li~~~~----~~g~~~~A~~l~ 201 (475)
....+.+ =..++..++....+.++...|...+.-+. +|+.. +-.++-+..+ ..-+...=+.+|
T Consensus 286 a~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lw 365 (549)
T PF07079_consen 286 ASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLW 365 (549)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 4332111 13356667777788888888877776554 33221 0111112222 112233445566
Q ss_pred HHHHHcCCCCCHH-HHHHHH---HHHhcCCC-HHHHHHHHHHhhhhcCCCCChhHHHHHH----HHHHHc---CCH---H
Q 038542 202 EEMLEAGVPPDDV-AFVGLL---SACSHCGL-VDKGREYFDSMKNDFGIIPKIEHYGCMV----DMLCRS---GRV---K 266 (475)
Q Consensus 202 ~~m~~~g~~p~~~-t~~~ll---~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li----~~~~~~---g~~---~ 266 (475)
+......+ |.. .-..|+ .-+-+.|. -+.|.++++.+.+- -.-|...-|.+. ..|.++ ..+ -
T Consensus 366 e~~qs~Di--DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f--t~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLl 441 (549)
T PF07079_consen 366 EEIQSYDI--DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF--TNYDIECENIVFLFVKQAYKQALSMHAIPRLL 441 (549)
T ss_pred HHHHhhcc--cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh--ccccHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 66655432 221 111122 22334444 77888888887752 122333222222 122221 112 2
Q ss_pred HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 267 EAHEFIQKMPIEA----NPIIWRTLISA--CCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 267 ~A~~~~~~m~~~p----~~~~~~~li~~--~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
+-..++++.|+.| +...-|.|.+| +..+|++.++.-.-..+.+..| ++.+|..++-+.....++++|...+..
T Consensus 442 kLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 442 KLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 3344555667666 34455666655 5679999999999999999999 789999999999999999999999976
Q ss_pred HH
Q 038542 341 MD 342 (475)
Q Consensus 341 m~ 342 (475)
+.
T Consensus 521 LP 522 (549)
T PF07079_consen 521 LP 522 (549)
T ss_pred CC
Confidence 53
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.36 E-value=1.7 Score=37.70 Aligned_cols=194 Identities=20% Similarity=0.153 Sum_probs=101.9
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMNG-----RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS- 221 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~- 221 (475)
..+......+...+++..+...+..... .....+......+...+....+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 3444555555555555555555554321 2233444444555555556666666666555332221 11111222
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCC--CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGI--IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN--PIIWRTLISACCARGE 296 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~--~~~~~~li~~~~~~g~ 296 (475)
.+...|+++.+...+...... .. ......+......+...++.+++...+... ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 556666666666666665321 11 112233333333455566666666666665 22222 4556666666666667
Q ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 297 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
++.|...+.......|.....+..+...+...+.++.+...+.....
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777776665444455555555555566666666655544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.3 Score=39.97 Aligned_cols=93 Identities=12% Similarity=-0.025 Sum_probs=58.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
-....-+-+.|++++|..+|+-+...+ .-|..-+..|...+-..++++.|...|......+. .|+...--...+|...
T Consensus 41 Y~~Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l 118 (165)
T PRK15331 41 YAHAYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHh
Confidence 334445566788888888887776643 22444445555566677778888777777665543 2333344456777777
Q ss_pred CCHHHHHHHHHhcCC
Q 038542 161 GDVDKALKLFRSMNG 175 (475)
Q Consensus 161 g~~~~A~~~~~~~~~ 175 (475)
|+.+.|+..|.....
T Consensus 119 ~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 119 RKAAKARQCFELVNE 133 (165)
T ss_pred CCHHHHHHHHHHHHh
Confidence 777777777766543
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.31 Score=45.69 Aligned_cols=94 Identities=21% Similarity=0.139 Sum_probs=74.8
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 327 (475)
..+..+.-+|.+.+++.+|.+..+.. ... +|+...--=..+|...|+++.|+..|+++++.+|.|..+-..|+.+-.+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k 337 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQK 337 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 35667778888999999998888776 333 4677666677899999999999999999999999998888888777766
Q ss_pred ccChhHH-HHHHHHHHh
Q 038542 328 LLRWEKK-TKIREVMDK 343 (475)
Q Consensus 328 ~g~~~~a-~~~~~~m~~ 343 (475)
..+..+. .++|..|-.
T Consensus 338 ~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 338 IREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 6655544 778888865
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.23 Score=38.64 Aligned_cols=89 Identities=13% Similarity=0.095 Sum_probs=65.8
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC---chHHHHHHHHHhccCh
Q 038542 258 MLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNE-PMHE---SNYVLLSHIYAKLLRW 331 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~~~---~~~~~l~~~~~~~g~~ 331 (475)
+++..|+++.|++.|.+. .+-| ....||.-..++.-.|+.++|..-+++.+++. |... .+|+.-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 566778888888888776 3333 56778888888888888888888888887764 3322 2466667778888888
Q ss_pred hHHHHHHHHHHhCCC
Q 038542 332 EKKTKIREVMDKRGM 346 (475)
Q Consensus 332 ~~a~~~~~~m~~~~~ 346 (475)
+.|..-|+...+.|-
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 888888888777663
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.18 Score=44.66 Aligned_cols=110 Identities=16% Similarity=0.106 Sum_probs=82.8
Q ss_pred HHHHHHhccC--CCChhHHHHHHHHHHHc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 038542 64 LGRKVFDEMS--ERDSVSWSAMIGGYARL-----GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG---------- 126 (475)
Q Consensus 64 ~A~~~f~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~---------- 126 (475)
-.++.|.... ++|-.+|-+++..+... +..+=.-..++.|.+.|+.-|..+|..||+.+-+-.
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666665 56888888888887654 455666677888999999999999999998875532
Q ss_pred ------ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC-HHHHHHHHHhc
Q 038542 127 ------ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD-VDKALKLFRSM 173 (475)
Q Consensus 127 ------~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~ 173 (475)
+-..+..++++|...|+-||..+-..|++++++.|- ..+..++.-.|
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 335678899999999999999999999999988775 33444444444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.55 Score=45.94 Aligned_cols=132 Identities=16% Similarity=0.272 Sum_probs=79.1
Q ss_pred HHHcCChHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHH
Q 038542 188 LAMHGRGLEAVALFEEML-EAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (475)
..-.|+++++.++...-. -..+ | ..-.+.++.-+.+.|..+.|+++...-.. -.+...++|+++
T Consensus 271 av~~~d~~~v~~~i~~~~ll~~i-~-~~~~~~i~~fL~~~G~~e~AL~~~~D~~~-------------rFeLAl~lg~L~ 335 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAASNLLPNI-P-KDQGQSIARFLEKKGYPELALQFVTDPDH-------------RFELALQLGNLD 335 (443)
T ss_dssp HHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH-------------HHHHHHHCT-HH
T ss_pred HHHcCChhhhhhhhhhhhhcccC-C-hhHHHHHHHHHHHCCCHHHHHhhcCChHH-------------HhHHHHhcCCHH
Confidence 345677777666554111 1112 2 33466677777777888887776443322 245566788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 267 EAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 267 ~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.|.++.++.. +...|..|.......|+++.|++.+++. .-+..|+-.|...|+.+.-.++.+....+|
T Consensus 336 ~A~~~a~~~~---~~~~W~~Lg~~AL~~g~~~lAe~c~~k~--------~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 336 IALEIAKELD---DPEKWKQLGDEALRQGNIELAEECYQKA--------KDFSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHCCCCS---THHHHHHHHHHHHHTTBHHHHHHHHHHC--------T-HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcC---cHHHHHHHHHHHHHcCCHHHHHHHHHhh--------cCccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 8877776653 6778888888888888888888888763 346677777778888777777766666555
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.68 Score=45.29 Aligned_cols=154 Identities=14% Similarity=0.074 Sum_probs=64.5
Q ss_pred HcCCCcHHHHHHHHHHH-HhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHH
Q 038542 21 AGIGDLNLGKSVHGAVL-KFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDL 99 (475)
Q Consensus 21 ~~~~~~~~a~~~~~~~~-~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 99 (475)
.-.++++.+.+..+.-. -..++ ....+.++..+-+.| -.+.|+++-..- ..-.....+.|+.+.|.++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G-~~e~AL~~~~D~--------~~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKG-YPELALQFVTDP--------DHRFELALQLGNLDIALEI 340 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT--HHHHHHHSS-H--------HHHHHHHHHCT-HHHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCC-CHHHHHhhcCCh--------HHHhHHHHhcCCHHHHHHH
Confidence 34566666544443110 00111 233555666555555 666666653221 1123334455555555544
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChh
Q 038542 100 FRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIV 179 (475)
Q Consensus 100 ~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~ 179 (475)
.++ .++...|..|...+...|+++.|+..+.+.. -+..|+-.|.-.|+.++-.++.+....++
T Consensus 341 a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~-- 403 (443)
T PF04053_consen 341 AKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG-- 403 (443)
T ss_dssp CCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT--
T ss_pred HHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence 321 2244455555555555555555555554432 13344555555555555444444433221
Q ss_pred HHHHHHHHHHHcCChHHHHHHHH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFE 202 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~ 202 (475)
-+|....++...|+.++..+++.
T Consensus 404 ~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 404 DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -HHHHHHHHHHHT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHH
Confidence 12333333444455555554443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.88 Score=41.56 Aligned_cols=113 Identities=15% Similarity=0.122 Sum_probs=51.7
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHhcCCCHHHH
Q 038542 160 CGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV----GLLSACSHCGLVDKG 232 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~a 232 (475)
.|+..+|-..++++.+ .|..+|+--=.++.-.|+.+.-...+++.... -.||...|. ...-++...|-+++|
T Consensus 116 ~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dA 194 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDA 194 (491)
T ss_pred cccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhH
Confidence 3444444444444432 24455555555555555555555555555433 122322111 122233345555555
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
++.-++..+ -.+.|...-.++...+...|++.++.++..+-
T Consensus 195 Ek~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~t 235 (491)
T KOG2610|consen 195 EKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKT 235 (491)
T ss_pred HHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhc
Confidence 555444432 11223334444455555555555555555544
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.82 E-value=1.1 Score=42.74 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcC-CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHH-HHHHHH
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQM-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIVSW-TSVIAG 187 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~-~~li~~ 187 (475)
...|...+++-.+..-++.|+.+|-++.+.| +.+++.++++++..|+ .|+..-|.++|+--. -+|...| +-.+.-
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 4456667777777777888888888888777 5677788888887665 467777788877432 2344333 334555
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPD--DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (475)
+...++-+.|..+|+..... +..+ ...|..++..-+.-|++..+..+=+.|... -|...+.......|+
T Consensus 476 Li~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~---~pQen~~evF~Sry~ 546 (660)
T COG5107 476 LIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL---VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH---cCcHhHHHHHHHHHh
Confidence 66677778888888755433 2222 346777887777788887777776666653 344433344444443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.78 E-value=4.6 Score=40.11 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=63.7
Q ss_pred CCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC-------ChhHHHHHHHHHHHcCChhHH
Q 038542 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER-------DSVSWSAMIGGYARLGLSTDA 96 (475)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A 96 (475)
.+.+.+.+++..+.++ -|+...|...-.-+.+..|+++.|.+.|++.... ....+-.+.-.+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 4556677777777665 5666666555444444444777777777754321 223444455556667777777
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHH-hccCCh-------HHHHHHHHHHH
Q 038542 97 IDLFRQMQISGVCPDEITMVTVLSAC-TDLGAL-------EVGKWVESFIE 139 (475)
Q Consensus 97 ~~~~~~m~~~g~~p~~~t~~~ll~~~-~~~~~~-------~~a~~~~~~~~ 139 (475)
.+.|..+.+.. .-...+|.-+..+| ...++. ++|..++.++.
T Consensus 325 ~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 77777777643 22344444444433 344555 55555555543
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.47 Score=43.73 Aligned_cols=121 Identities=12% Similarity=0.053 Sum_probs=54.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCC--CC--ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHH---
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGI--IP--KIEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEANPIIW--- 284 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~--~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~--- 284 (475)
+..++...+.++++++.|+...+--.- .| ...+|..|...|.+..++++|.-+..+. ++..-..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 444444555555555555544431010 11 2245555666666666655554443332 222111111
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHhC----C--CCCCchHHHHHHHHHhccChhHHHHHHH
Q 038542 285 --RTLISACCARGELKLAESITKRLIGN----E--PMHESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 285 --~~li~~~~~~g~~~~a~~~~~~~~~~----~--p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
.-+..++...|..-.|.+..++..++ + |........+.++|...|+.|.|..-++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 12334555555555555555554322 1 2222233455556666666555544443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.72 E-value=4.2 Score=38.97 Aligned_cols=127 Identities=9% Similarity=0.083 Sum_probs=79.9
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHH-HHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFG-IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIW-RTLISA 290 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~-~~li~~ 290 (475)
..|...+++..+..-++.|..+|-+..+. + +.+++..+++++.-++ .|+..-|.++|+-- ..-||...| +..+.-
T Consensus 398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~f 475 (660)
T COG5107 398 FVFCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLF 475 (660)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45666777777777788888888888775 5 5677778888777665 45666777777654 223444333 445555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCC--CCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 291 CCARGELKLAESITKRLIGNEPM--HESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+...++-..|..+|+...+.-.. -...|..++.--..-|+...+..+-++|.
T Consensus 476 Li~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~ 529 (660)
T COG5107 476 LIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR 529 (660)
T ss_pred HHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence 66677777777777754432211 13456666666666666666555555543
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.66 E-value=2.7 Score=41.77 Aligned_cols=161 Identities=12% Similarity=0.077 Sum_probs=107.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHHhc----CCCHHHHHHHHHHhhhhcCCCCChh
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDD-----VAFVGLLSACSH----CGLVDKGREYFDSMKNDFGIIPKIE 250 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~-----~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~ 250 (475)
...+++...-.|+-+.+++++.+..+.+ +.-.. .+|..++..++. ....+.|.+++..+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3345555566789999999988876543 22111 223333433333 46788899999999874 45554
Q ss_pred HHHH-HHHHHHHcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHH-H
Q 038542 251 HYGC-MVDMLCRSGRVKEAHEFIQKMPI-E-----ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL-S 322 (475)
Q Consensus 251 ~~~~-li~~~~~~g~~~~A~~~~~~m~~-~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l-~ 322 (475)
.|.. -...+...|++++|.+.|++.-. + .....+--+...+....++++|...|.++.+...-+...|..+ .
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 4443 34566778999999999997621 1 1223344456667788999999999999999876655666544 4
Q ss_pred HHHHhccCh-------hHHHHHHHHHHhC
Q 038542 323 HIYAKLLRW-------EKKTKIREVMDKR 344 (475)
Q Consensus 323 ~~~~~~g~~-------~~a~~~~~~m~~~ 344 (475)
-+|...|+. ++|.+++.+....
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 455677888 8888888877553
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.55 E-value=2.8 Score=36.23 Aligned_cols=199 Identities=16% Similarity=0.089 Sum_probs=116.9
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHc-CCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHH-H
Q 038542 113 ITMVTVLSACTDLGALEVGKWVESFIEKQ-MVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIA-G 187 (475)
Q Consensus 113 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~ 187 (475)
..+......+...+.+..+...+...... ........+..+...+...+++..+...+...... +...+..... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 34444444455555555555554444431 12223334444555555555566666666655431 1122222222 5
Q ss_pred HHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCC
Q 038542 188 LAMHGRGLEAVALFEEMLEAGV--PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGR 264 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~ 264 (475)
+...|+.+.|...+.+...... ......+......+...++.+.+...+..... .... ....+..+...+...+.
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHccc
Confidence 6777778888877777754211 11233344444446667788888888887775 3333 35667777778888888
Q ss_pred HHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 265 VKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 265 ~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
+++|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 88888888777 33443 445555555555667788999888888888775
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.55 E-value=5.5 Score=39.60 Aligned_cols=304 Identities=13% Similarity=0.081 Sum_probs=161.3
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC------CChhHHHHHHHHHHHcCChhH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE------RDSVSWSAMIGGYARLGLSTD 95 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~------~~~~~~~~li~~~~~~g~~~~ 95 (475)
+.|..+.+..+|+..++ |++.+...|...+.......|+.+..++.|+.... .+..-|...|.--..++++..
T Consensus 91 klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~ 169 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKR 169 (577)
T ss_pred HhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHH
Confidence 45777888888888776 46777788888877777766688888888877653 256678888887778888888
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHhc-----cCChHHHHHHHHHHHH--------------------cC--------
Q 038542 96 AIDLFRQMQISGVCPDEITMVTVLSACTD-----LGALEVGKWVESFIEK--------------------QM-------- 142 (475)
Q Consensus 96 A~~~~~~m~~~g~~p~~~t~~~ll~~~~~-----~~~~~~a~~~~~~~~~--------------------~~-------- 142 (475)
...++++.++.-..-=...|......... ....+++.++-....+ .+
T Consensus 170 v~~iyeRileiP~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~ 249 (577)
T KOG1258|consen 170 VANIYERILEIPLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTE 249 (577)
T ss_pred HHHHHHHHHhhhhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhH
Confidence 88888888763100000011111111000 1112222111111110 00
Q ss_pred ---------------------------------------C----CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-
Q 038542 143 ---------------------------------------V----NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI- 178 (475)
Q Consensus 143 ---------------------------------------~----~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~- 178 (475)
+ +++..+|..-++.-.+.|+.+.+.-+|++..-+-.
T Consensus 250 ~~~~l~~~~~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~ 329 (577)
T KOG1258|consen 250 EKTILKRIVSIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCAL 329 (577)
T ss_pred HHHHHHHHHHHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhh
Confidence 0 00112223333333333333333333333322200
Q ss_pred --hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHH
Q 038542 179 --VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI-EHYGCM 255 (475)
Q Consensus 179 --~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~l 255 (475)
..|--.+.-....|+.+-|..++....+--++-...+-..-..-+-..|+.+.|..+++.+..+ . |+. ..-..-
T Consensus 330 Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~ 406 (577)
T KOG1258|consen 330 YDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRK 406 (577)
T ss_pred hHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHH
Confidence 1111111112222444444444433333222222221111112234568999999999999885 3 543 333445
Q ss_pred HHHHHHcCCHHHHH---HHHHhC-CCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 256 VDMLCRSGRVKEAH---EFIQKM-PIEANPIIWRTLIS-----ACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 256 i~~~~~~g~~~~A~---~~~~~m-~~~p~~~~~~~li~-----~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
+....+.|..+.+. .++... +.+-+..+...+.- .+...++.+.|..++.++.+..|++...|..+++...
T Consensus 407 ~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~ 486 (577)
T KOG1258|consen 407 INWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFEL 486 (577)
T ss_pred HhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHH
Confidence 66677888888877 444444 21222222222222 2445688999999999999999999999999988877
Q ss_pred hcc
Q 038542 327 KLL 329 (475)
Q Consensus 327 ~~g 329 (475)
..+
T Consensus 487 ~~~ 489 (577)
T KOG1258|consen 487 IQP 489 (577)
T ss_pred hCC
Confidence 665
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.44 E-value=6.4 Score=39.90 Aligned_cols=55 Identities=20% Similarity=0.199 Sum_probs=32.1
Q ss_pred CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHH
Q 038542 143 VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFE 202 (475)
Q Consensus 143 ~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 202 (475)
++.+....-.+.+++.+.|.-++|.+.|-+...|.. .+..|...+++.+|.++-+
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pka-----Av~tCv~LnQW~~avelaq 902 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKA-----AVHTCVELNQWGEAVELAQ 902 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHH-----HHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777777766554422 2233444445555554443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.24 E-value=4.3 Score=37.17 Aligned_cols=26 Identities=12% Similarity=0.116 Sum_probs=13.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMN 174 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~ 174 (475)
++-.-+..+.+.++.+.+.+.+.+|.
T Consensus 123 ~~~L~l~il~~~~~~~~~~~~L~~mi 148 (278)
T PF08631_consen 123 VFLLKLEILLKSFDEEEYEEILMRMI 148 (278)
T ss_pred HHHHHHHHHhccCChhHHHHHHHHHH
Confidence 33333444444555555555555554
|
It is also involved in sporulation []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.087 Score=30.40 Aligned_cols=32 Identities=19% Similarity=0.154 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
.+|..+...+...|++++|...++++++.+|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46778888888888888888888888888775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.15 Score=29.30 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..|..+...+...|++++|.+.++++++++|++
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888887754
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.89 E-value=6 Score=37.51 Aligned_cols=116 Identities=11% Similarity=-0.039 Sum_probs=61.7
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCccHHHHHH--HHHHhcCCHHHHHHHHHhcCCCChh---------------HHHHH
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVGLCNALI--DMFAKCGDVDKALKLFRSMNGRTIV---------------SWTSV 184 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li--~~y~~~g~~~~A~~~~~~~~~~~~~---------------~~~~l 184 (475)
+...++.+.|.++-..+.+... ...+..++ .++--.++.++|...|++-..-|.. .|..=
T Consensus 179 l~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 179 LAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhh
Confidence 4567777777777666665431 11222222 2333456777787777776543321 12222
Q ss_pred HHHHHHcCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 185 IAGLAMHGRGLEAVALFEEMLEA---GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
..-..+.|++.+|.+.|.+.+.. +.+|+...|.....+..+.|+.++|+.--+...
T Consensus 256 gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al 314 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEAL 314 (486)
T ss_pred hhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhh
Confidence 22334566666666666666542 233444455555555556666666665554443
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.61 Score=36.35 Aligned_cols=88 Identities=14% Similarity=-0.008 Sum_probs=44.3
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHH---HHHHHHHHHHhcC
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEANPI---IWRTLISACCARG 295 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~---~~~~li~~~~~~g 295 (475)
.+..|+++.|++.|.+... -.+.....||.-..++.-.|+.++|++-+++. +-+ +.. .|..-...|...|
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3445555555555555443 22334445555555555555555555554444 111 111 1222223456667
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 038542 296 ELKLAESITKRLIGNEPM 313 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~ 313 (475)
+.+.|..-|+..-+++.+
T Consensus 130 ~dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLGSK 147 (175)
T ss_pred chHHHHHhHHHHHHhCCH
Confidence 777777777776666643
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.54 E-value=6.9 Score=37.10 Aligned_cols=150 Identities=9% Similarity=-0.006 Sum_probs=81.5
Q ss_pred CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC--hh
Q 038542 176 RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP---DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK--IE 250 (475)
Q Consensus 176 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~--~~ 250 (475)
....+|..++..+.+.|+++.|...+.++...+..+ +......-+...-..|+..+|...++...+. .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 345678888899999999999999998887754211 2233334455566778888888888777762 11111 11
Q ss_pred HHHHHHHHHHHcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 251 HYGCMVDMLCRSGRVKEAHEF-IQKMPIEANPIIWRTLISACCAR------GELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~-~~~m~~~p~~~~~~~li~~~~~~------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
....+...+.. ..+..... ........-...+..+..-+... +..+.+...++.+.+..|.....|..+..
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111000 00000000 00000000112222233333333 77888899999999998887777777766
Q ss_pred HHHhc
Q 038542 324 IYAKL 328 (475)
Q Consensus 324 ~~~~~ 328 (475)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 66443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.47 E-value=7.6 Score=37.36 Aligned_cols=274 Identities=9% Similarity=0.086 Sum_probs=155.2
Q ss_pred HcCCCcHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHhCCCCHHHHHHHHhccCCC-ChhHHHHHHHHH--HHcC
Q 038542 21 AGIGDLNLGKSVHGAVLKFQFGDD------IHVQNTLVHMYGSCEGGIELGRKVFDEMSER-DSVSWSAMIGGY--ARLG 91 (475)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~g~~~~------~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~-~~~~~~~li~~~--~~~g 91 (475)
-+.+++.++..+|..+.+.. ..+ ....+.++++|... +++..........+. ....|-.+..++ -+.+
T Consensus 17 qkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~--nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k 93 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN--NLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQK 93 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh--hHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhh
Confidence 46789999999999988763 222 23457788888874 577766666555542 133455555443 3678
Q ss_pred ChhHHHHHHHHHHHC--CCCCC------------HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCC----CCccHHHHH
Q 038542 92 LSTDAIDLFRQMQIS--GVCPD------------EITMVTVLSACTDLGALEVGKWVESFIEKQMVN----RSVGLCNAL 153 (475)
Q Consensus 92 ~~~~A~~~~~~m~~~--g~~p~------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l 153 (475)
.+.+|++.+..-.+. +-.|. -.-=...+..+...|.+.+|+.+++++...=++ .+..+|+.+
T Consensus 94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~ 173 (549)
T PF07079_consen 94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA 173 (549)
T ss_pred hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence 899999988877654 22221 111133455677899999999999888755443 788899998
Q ss_pred HHHHHhcCCHHHHHHHHHhcCC---CCh-hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC--C
Q 038542 154 IDMFAKCGDVDKALKLFRSMNG---RTI-VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC--G 227 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~---~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~--g 227 (475)
+-+++++ .|-++.+ -|+ .-|--||..|.+.=+.-++.. =..+-|-...+..++....-. .
T Consensus 174 vlmlsrS--------YfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~------Y~k~~peeeL~s~imqhlfi~p~e 239 (549)
T PF07079_consen 174 VLMLSRS--------YFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRP------YEKFIPEEELFSTIMQHLFIVPKE 239 (549)
T ss_pred HHHHhHH--------HHHHHHHhcccccChHHHHHHHHHHHHHHHHhhch------HHhhCcHHHHHHHHHHHHHhCCHh
Confidence 8888764 3333221 122 345555555544321111100 001233333333333322211 1
Q ss_pred CHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHHcCCHHHHHHHHHhC---CCCC----CHHHHHHHHHHHHhcCCHHH
Q 038542 228 LVDKGREYFDSMKNDFGIIPKI-EHYGCMVDMLCRSGRVKEAHEFIQKM---PIEA----NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 228 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p----~~~~~~~li~~~~~~g~~~~ 299 (475)
...--.+++....+ +-+.|+- -....|+..+.. +.+++..+-+.+ .+++ -..++..++..+.+.++...
T Consensus 240 ~l~~~mq~l~~We~-~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~ 316 (549)
T PF07079_consen 240 RLPPLMQILENWEN-FYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEE 316 (549)
T ss_pred hccHHHHHHHHHHh-hccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 12222333333333 2444542 233344444443 445555554444 1111 24567888888888999999
Q ss_pred HHHHHHHHHhCCCCC
Q 038542 300 AESITKRLIGNEPMH 314 (475)
Q Consensus 300 a~~~~~~~~~~~p~~ 314 (475)
|.+.+..+.-.+|..
T Consensus 317 a~q~l~lL~~ldp~~ 331 (549)
T PF07079_consen 317 AKQYLALLKILDPRI 331 (549)
T ss_pred HHHHHHHHHhcCCcc
Confidence 998888888887765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.36 E-value=2.4 Score=39.14 Aligned_cols=130 Identities=8% Similarity=0.016 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh--CC---CCHHHHHHHHhccCC-------CChhHHHHHHHHHHHcCCh
Q 038542 26 LNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS--CE---GGIELGRKVFDEMSE-------RDSVSWSAMIGGYARLGLS 93 (475)
Q Consensus 26 ~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~--~g---g~~~~A~~~f~~~~~-------~~~~~~~~li~~~~~~g~~ 93 (475)
++....+++.+.+.|+..+..+|-+..-.... .. .....|..+|+.|++ ++-.++.+|+.. ..+++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667889999999999888777664443333 11 136678999999985 245566666555 33333
Q ss_pred ----hHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCC--hHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 038542 94 ----TDAIDLFRQMQISGVCPDEI--TMVTVLSACTDLGA--LEVGKWVESFIEKQMVNRSVGLCNALIDMF 157 (475)
Q Consensus 94 ----~~A~~~~~~m~~~g~~p~~~--t~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 157 (475)
+.+...|+.+...|...+.. ..+.++..+..... ...+..+++.+.+.|+++....|..+.-..
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 56778888888888776433 33444444433333 347788888999999888887777665433
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.33 E-value=2.2 Score=38.09 Aligned_cols=63 Identities=16% Similarity=0.142 Sum_probs=30.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
--|..++...|++++|...|..+ |-.| -+...-.|.......|+.++|...|+++.+..|..+
T Consensus 182 yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 182 YWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 33444444444444444444443 2222 223444455555555666666666666665555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.31 E-value=2.4 Score=33.94 Aligned_cols=114 Identities=15% Similarity=0.056 Sum_probs=56.4
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc
Q 038542 185 IAGLAMHGRGLEAVALFEEMLEAGV--PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (475)
.....+.|++++|.+.|+.+...-. +-....-..|+.+|.+.+++++|...++...+-+--.|+ ..|...+.+++.-
T Consensus 17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHH
Confidence 3344556666666666666655410 112234445666666666666666666666654222333 2344444443332
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 263 GRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 263 g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
...+. .|..+ +.. ...+....|...|+++++.-|++.
T Consensus 96 ~~~~~---~~~~~~~~d-------------rD~~~~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 96 EQDEG---SLQSFFRSD-------------RDPTPARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHhhh---HHhhhcccc-------------cCcHHHHHHHHHHHHHHHHCcCCh
Confidence 22211 11111 111 111234577777888888778753
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.17 E-value=5.8 Score=35.16 Aligned_cols=57 Identities=18% Similarity=0.159 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCc---hHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHES---NYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+..-|.+.|.+-.|..-++++++.-|.... .+..+..+|...|-.++|.+.-+-+..
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~ 232 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGA 232 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHh
Confidence 456688999999999999999988765544 456677889999999999888766654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.16 E-value=12 Score=38.84 Aligned_cols=181 Identities=13% Similarity=0.013 Sum_probs=107.9
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHH----hcC-----CC-------ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLK----FQF-----GD-------DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE 74 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~----~g~-----~~-------~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~ 74 (475)
...+.++.++...+.+-.=.-+++.+.+ .+. .. .......-+++..+.. -++.|..+-..-..
T Consensus 284 ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~-ly~~Ai~LAk~~~~ 362 (933)
T KOG2114|consen 284 SSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKN-LYKVAINLAKSQHL 362 (933)
T ss_pred cchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhh-hHHHHHHHHHhcCC
Confidence 3456677777777765544444444332 220 01 1122345666677766 78888887665443
Q ss_pred CChhHHHHH----HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHH
Q 038542 75 RDSVSWSAM----IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150 (475)
Q Consensus 75 ~~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 150 (475)
+..+-..+ ..-+.+.|++++|...|-+-... +.| +.++.-+.......+-..+++.+.+.|+. +...-
T Consensus 363 -d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dht 434 (933)
T KOG2114|consen 363 -DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHT 434 (933)
T ss_pred -CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhH
Confidence 22332233 34455789999999888776543 233 23555566666677777788888888876 55566
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChh--HHHHHHHHHHHcCChHHHHHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGRTIV--SWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~l~ 201 (475)
+.|+++|.+.++.++-.++.+... .... -....+..+.+.+-.++|..+-
T Consensus 435 tlLLncYiKlkd~~kL~efI~~~~-~g~~~fd~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 435 TLLLNCYIKLKDVEKLTEFISKCD-KGEWFFDVETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHhcchHHHHHHHhcCC-CcceeeeHHHHHHHHHHhChHHHHHHHH
Confidence 788999999999988888777665 2211 1233344444444445544443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.15 E-value=3 Score=40.54 Aligned_cols=62 Identities=16% Similarity=0.134 Sum_probs=42.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 285 RTLISACCARGELKLAESITKRLIGNEPM--HESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 285 ~~li~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
..|...+.+.|+.++|.+.++++.+..|. +......|+.++...+.+.++..++.+-.+...
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 44566666777778888777777766543 334566777777777777777777776554333
|
The molecular function of this protein is uncertain. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.3 Score=36.49 Aligned_cols=135 Identities=13% Similarity=0.124 Sum_probs=72.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHH-H
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI-TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNA-L 153 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l 153 (475)
+-..|..-+. +++.+..++|+.-|..+...|...-+. ..-.......+.|+-..|...|+++-+....|.+.--.+ |
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl 136 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL 136 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence 3344444443 345666777777777777665432111 111122234566777777777777765443333221111 1
Q ss_pred --HHHHHhcCCHHHHHHHHHhcCCC-Ch---hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 154 --IDMFAKCGDVDKALKLFRSMNGR-TI---VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 154 --i~~y~~~g~~~~A~~~~~~~~~~-~~---~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.-.+...|.+++.....+-+..+ +. ..-.+|.-+-.+.|++.+|...|..+......|
T Consensus 137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 12344567777777666665432 21 234455556667777777777777766543334
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.95 E-value=6.7 Score=38.02 Aligned_cols=157 Identities=11% Similarity=0.077 Sum_probs=101.3
Q ss_pred hHH--HHHHHHHHHcC-----ChHHHHHHHHHHHHc-CCCCCH-HHHHHHHHHHhc---------CCCHHHHHHHHHHhh
Q 038542 179 VSW--TSVIAGLAMHG-----RGLEAVALFEEMLEA-GVPPDD-VAFVGLLSACSH---------CGLVDKGREYFDSMK 240 (475)
Q Consensus 179 ~~~--~~li~~~~~~g-----~~~~A~~l~~~m~~~-g~~p~~-~t~~~ll~~~~~---------~g~~~~a~~~~~~m~ 240 (475)
..| ...+.+..... ..+.|+.+|.+.... .+.|+- ..|..+..++.. .....+|.+.-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 567 66666655422 345788899998821 245553 344433333221 233455666665555
Q ss_pred hhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 241 NDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 241 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
+ --+-|+.....+..++.-.++++.|..+|++. .+.|| ..+|......+.-.|+.++|.+.+++.+++.|....+-
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~ 409 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAV 409 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHH
Confidence 4 23446677777777778888899999999998 56664 45566666667778999999999999999998765432
Q ss_pred --HHHHHHHHhccChhHHHHHH
Q 038542 319 --VLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 319 --~~l~~~~~~~g~~~~a~~~~ 338 (475)
...+..|... ..++|.+++
T Consensus 410 ~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 410 VIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHHHHHHcCC-chhhhHHHH
Confidence 2344456554 466676666
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=92.82 E-value=24 Score=41.34 Aligned_cols=311 Identities=12% Similarity=0.021 Sum_probs=172.3
Q ss_pred HHHHHHHcCCCcHHHHHHHHHH----HHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHh-ccCCCChhHHHHHHHHHHH
Q 038542 15 FVLKACAGIGDLNLGKSVHGAV----LKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFD-EMSERDSVSWSAMIGGYAR 89 (475)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~----~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~-~~~~~~~~~~~~li~~~~~ 89 (475)
++..+-.+.+.+..|...++.- .+. ......+-.+...|+..+ ++|....+.. ....++. ..-|.-...
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~-dpDgV~Gv~~~r~a~~sl---~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIH-DPDGVEGVSARRFADPSL---YQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcC-CcchhhhHHHHhhcCccH---HHHHHHHHh
Confidence 3444556677778888777773 111 122234445555888888 8888777766 3334433 234555667
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHH-HHHHHHHhcCCHHHHHH
Q 038542 90 LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN-ALIDMFAKCGDVDKALK 168 (475)
Q Consensus 90 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~y~~~g~~~~A~~ 168 (475)
.|++..|...|+.+.+.+ ++...+++.++..-...+.++......+-.... ..+....++ .=+.+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999998763 333667888888777777777766644444332 222333333 33455577888888777
Q ss_pred HHHhcCCCChhHHHHH-H-HHHHHc--CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH------
Q 038542 169 LFRSMNGRTIVSWTSV-I-AGLAMH--GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS------ 238 (475)
Q Consensus 169 ~~~~~~~~~~~~~~~l-i-~~~~~~--g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~------ 238 (475)
... ..+..+|.+. + ....+. .+.-.-.++.+.+++.-+.| +.+|+..|.+..+.++.-.
T Consensus 1540 ~l~---~~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~--------lsa~s~~~Sy~~~Y~~~~kLH~l~e 1608 (2382)
T KOG0890|consen 1540 YLS---DRNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIEN--------LSACSIEGSYVRSYEILMKLHLLLE 1608 (2382)
T ss_pred hhh---cccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhh--------HHHhhccchHHHHHHHHHHHHHHHH
Confidence 766 5566666665 2 222222 22222223444443321111 1122222211111111110
Q ss_pred ----hhhhcCCCCChh------HHHHH---HHHHHHcCCHHHHHH-HHHhCCCCC-----CHHHHHHHHHHHHhcCCHHH
Q 038542 239 ----MKNDFGIIPKIE------HYGCM---VDMLCRSGRVKEAHE-FIQKMPIEA-----NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 239 ----m~~~~~~~p~~~------~~~~l---i~~~~~~g~~~~A~~-~~~~m~~~p-----~~~~~~~li~~~~~~g~~~~ 299 (475)
.....+..++.. .|..- .+.+.+....--|.+ .+.....+| -..+|-...+.++..|.++.
T Consensus 1609 l~~~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~ 1688 (2382)
T KOG0890|consen 1609 LENSIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQR 1688 (2382)
T ss_pred HHHHHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHH
Confidence 111112222221 11111 112222111111111 111111121 35689999999999999999
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 300 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
|...+-.+.+..+ +..+.-.+......|+-..|..+++.-.+...
T Consensus 1689 A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1689 AQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred HHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 9998888877774 46788889999999999999999988876543
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=92.66 E-value=14 Score=38.30 Aligned_cols=77 Identities=8% Similarity=0.037 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 265 VKEAHEFIQKMP-IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 265 ~~~A~~~~~~m~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
.++|...++... ...+...+..-+..-...++++.+...+..|-........-..=+.+++...|+.++|...|+..
T Consensus 295 ~~~a~~w~~~~~~~~~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 295 TDEQAKWRDDVIMRSQSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred CHHHHHHHHhcccccCCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 444555555431 11122223333333335555555555555543322223334444555555556666665555554
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.58 E-value=7.1 Score=34.63 Aligned_cols=61 Identities=20% Similarity=0.121 Sum_probs=42.0
Q ss_pred HHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
+..-|.+.|.+..|..-+++| +-.+ .....-.+..+|...|-.++|....+-+...-|+++
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p~s~ 238 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYPDSQ 238 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCCCCc
Confidence 345677888888887777777 1111 234455677889999999999888776666667654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.67 Score=41.87 Aligned_cols=63 Identities=22% Similarity=0.182 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..++..++..+...|+.+.+.+.++++...+|-+...|..++.+|.+.|+...|...++.+.+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 345667788888889999999999999999999999999999999999999999999998876
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=92.47 E-value=5.2 Score=37.22 Aligned_cols=125 Identities=18% Similarity=0.068 Sum_probs=56.6
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHhcCCCHHHHHHHHHHhh---hhcCCCCChhHHHHH
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGV-PP----DDVAFVGLLSACSHCGLVDKGREYFDSMK---NDFGIIPKIEHYGCM 255 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~-~p----~~~t~~~ll~~~~~~g~~~~a~~~~~~m~---~~~~~~p~~~~~~~l 255 (475)
|..++.-.+.++++++.|+....--- .. ....+..|-..|....+.++|.-+..... ..+++..-..-|.++
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444445555566666555433110 11 12345555555555556655544433222 112322222222222
Q ss_pred H-----HHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 256 V-----DMLCRSGRVKEAHEFIQKM-------PIEA-NPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 256 i-----~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+ -+|...|.+-+|.+.-++. |.+| .......+.+.|...|+.+.|..-++.+.
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 2 2344445544444444332 3332 23334456666777777777666665543
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.8 Score=39.67 Aligned_cols=159 Identities=14% Similarity=0.052 Sum_probs=118.9
Q ss_pred HcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHH----HHHHHHHcCCH
Q 038542 190 MHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGC----MVDMLCRSGRV 265 (475)
Q Consensus 190 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~----li~~~~~~g~~ 265 (475)
-.|+..+|-..++++.+. .+.|...+...=.+|...|+.+.-...++.+.. ...|+...|.- +.-++..+|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhccc
Confidence 378888898999998876 577888888888999999999999999988875 34455544433 34445689999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC----CCchHHHHHHHHHhccChhHHHHHHH
Q 038542 266 KEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPM----HESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 266 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
++|++.-++. .+.| |...-.++...+-..|+++++.++..+-...-.. -...|=...-.+...+.++.|.++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9999999988 5555 6677778888888899999999988775433211 12245556667788899999999998
Q ss_pred HHHhCCCccCCC
Q 038542 340 VMDKRGMKKIPG 351 (475)
Q Consensus 340 ~m~~~~~~~~~~ 351 (475)
.=.-+.+.++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 866555555444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=2.8 Score=40.49 Aligned_cols=116 Identities=13% Similarity=0.066 Sum_probs=85.7
Q ss_pred CHHHHHHHHHHhhhhcCCCCCh-hHHHHHHHHHHH---------cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 038542 228 LVDKGREYFDSMKNDFGIIPKI-EHYGCMVDMLCR---------SGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG 295 (475)
Q Consensus 228 ~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~---------~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 295 (475)
..+.|..+|.+......+.|+- ..|..+..++.. .....+|.++.++. .+.| |+.....+..+....+
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhc
Confidence 3567888888887433556653 444444433322 22345666666665 4444 7777777777778888
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+++.|...|+++..++|+...+|........-.|+.++|.+.+++..+
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr 400 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ 400 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999877543
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.30 E-value=8.4 Score=34.81 Aligned_cols=59 Identities=19% Similarity=0.093 Sum_probs=51.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 285 RTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 285 ~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+.....|...|.+.+|.++.++++..+|.+...+..|++.++..|+--.+.+-++.+.+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 33446788999999999999999999999999999999999999998888777777753
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.59 Score=39.39 Aligned_cols=88 Identities=16% Similarity=0.154 Sum_probs=69.5
Q ss_pred HHHHcCCHHHHHHHHHhC--CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 258 MLCRSGRVKEAHEFIQKM--PIEA-----NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m--~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
-+.+.|++++|..-|... ..++ -...|..-..++.+.+.++.|+.-..+.++++|....+...-..+|.+...
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek 183 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEK 183 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhh
Confidence 466778888888877776 1111 234555566778889999999999999999999888888888889999999
Q ss_pred hhHHHHHHHHHHhCC
Q 038542 331 WEKKTKIREVMDKRG 345 (475)
Q Consensus 331 ~~~a~~~~~~m~~~~ 345 (475)
+++|..-++.+.+..
T Consensus 184 ~eealeDyKki~E~d 198 (271)
T KOG4234|consen 184 YEEALEDYKKILESD 198 (271)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999998887643
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=9.6 Score=34.93 Aligned_cols=79 Identities=8% Similarity=0.153 Sum_probs=32.8
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCCh----hHHHHHHHHHHHCCCCCCHHHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLS----TDAIDLFRQMQISGVCPDEITMVT 117 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~t~~~ 117 (475)
.+|..+....+..+...| ..+....+..-+..+|...-...+.++.+.|+. .+++.++..+... .|+...-..
T Consensus 34 d~d~~vR~~A~~aL~~~~-~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~ 110 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRG-GQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRAS 110 (280)
T ss_pred CCCHHHHHHHHHHHHhcC-cchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHH
Confidence 344444444555555544 322222222222333444444445555555542 2344555444222 234443334
Q ss_pred HHHHHh
Q 038542 118 VLSACT 123 (475)
Q Consensus 118 ll~~~~ 123 (475)
.+.++.
T Consensus 111 A~~aLG 116 (280)
T PRK09687 111 AINATG 116 (280)
T ss_pred HHHHHh
Confidence 444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.01 E-value=3.1 Score=35.07 Aligned_cols=58 Identities=22% Similarity=0.242 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCC------hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGRT------IVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
.+..+.+.|.+.|+.+.|.+.|.++.+.. +..+-.+|......+++..+.....+...
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45566777777777777777777765442 13455566666666676666666665544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.93 E-value=11 Score=35.57 Aligned_cols=68 Identities=15% Similarity=0.142 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC----CCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEP----MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
....+|..+...+.+.|+++.|...+.++...++ ..+.....-+......|+..+|...++...+..+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~ 215 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRL 215 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 3567899999999999999999999999987652 2355666778888899999999999988877433
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.89 E-value=0.39 Score=28.14 Aligned_cols=26 Identities=19% Similarity=0.220 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQ 104 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (475)
+|+.|...|.+.|++++|+++|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777788888888888888887744
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=91.78 E-value=5.3 Score=31.43 Aligned_cols=135 Identities=18% Similarity=0.236 Sum_probs=76.9
Q ss_pred HhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 158 AKCGDVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
.-.|.+++..++..+... .+..-+|=+|.-....-+-+-..+.++.. |--.|. +..|++......+
T Consensus 13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsI---GkiFDi----------s~C~NlKrVi~C~ 79 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSI---GKIFDI----------SKCGNLKRVIECY 79 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHH---GGGS-G----------GG-S-THHHHHHH
T ss_pred HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------hhhcchHHHHHHH
Confidence 345778888888877653 34444444443333333333333443333 322222 2234444444444
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 237 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
-.+-. +.+....-++.+...|+-+...+++..+ .-++++...-.+..||.+.|+..++.++++++-+.+
T Consensus 80 ~~~n~------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 80 AKRNK------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHTT---------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHhcc------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 33222 4455667788889999999888888886 356788888899999999999999999999887766
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.67 E-value=11 Score=39.21 Aligned_cols=179 Identities=17% Similarity=0.119 Sum_probs=108.2
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc
Q 038542 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV--GLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH 191 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 191 (475)
+...-+....+...++.|..+-. ..+.+++. .......+-+.+.|++++|...|-+....-..+ .+|.-|...
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s--~Vi~kfLda 410 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS--EVIKKFLDA 410 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH--HHHHHhcCH
Confidence 34455566666666666655432 33333332 223334455567788888888776654321122 255666667
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
.+..+-..+++.+.+.|+.. ...-..|+.+|.+.++.+.-.++.+.-.+ |.- ..-....+..+.+.+-+++|..+
T Consensus 411 q~IknLt~YLe~L~~~gla~-~dhttlLLncYiKlkd~~kL~efI~~~~~--g~~--~fd~e~al~Ilr~snyl~~a~~L 485 (933)
T KOG2114|consen 411 QRIKNLTSYLEALHKKGLAN-SDHTTLLLNCYIKLKDVEKLTEFISKCDK--GEW--FFDVETALEILRKSNYLDEAELL 485 (933)
T ss_pred HHHHHHHHHHHHHHHccccc-chhHHHHHHHHHHhcchHHHHHHHhcCCC--cce--eeeHHHHHHHHHHhChHHHHHHH
Confidence 77777778888888887543 33345688888888888887776655442 221 11234566677777778888777
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 272 IQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 272 ~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
-.+.+. +......++ -..+++++|.+.++.+
T Consensus 486 A~k~~~--he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 486 ATKFKK--HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcc--CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 777653 344444444 4457888888877653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.66 E-value=1.6 Score=39.51 Aligned_cols=74 Identities=12% Similarity=0.245 Sum_probs=50.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLE-----AGVPPDDVAFVGLL 220 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t~~~ll 220 (475)
++..++..+..+|+.+.+.+.++++... +...|..+|.+|.+.|+...|+..|+++.. .|+.|-..+.....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 5566777777777777777777776533 556777788888888887777777777654 35666655544444
Q ss_pred HH
Q 038542 221 SA 222 (475)
Q Consensus 221 ~~ 222 (475)
.+
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 43
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=91.19 E-value=12 Score=34.50 Aligned_cols=48 Identities=13% Similarity=0.252 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cC----ChHHHHHHHHHHHHc
Q 038542 94 TDAIDLFRQMQISGVCPDEITMVTVLSACTD--LG----ALEVGKWVESFIEKQ 141 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~--~~----~~~~a~~~~~~~~~~ 141 (475)
++.+.+++.|.+.|.+-+..+|.+....... .. ....+..+|+.|.+.
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~ 132 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKK 132 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHh
Confidence 4556777888888888777777554433322 22 334567777777764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.94 E-value=3.8 Score=35.90 Aligned_cols=114 Identities=11% Similarity=0.077 Sum_probs=62.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhc-CCCCCh--hHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDF-GIIPKI--EHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISAC 291 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~-~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~ 291 (475)
.|......|...|.++.|-..++...+.. ++.|+. ..|..-+..+...++...|.++ +...-..+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el------------~gk~sr~l 160 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFEL------------YGKCSRVL 160 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH------------HHHhhhHh
Confidence 34445555666666666555554433210 233332 1222222233333333334333 33444556
Q ss_pred HhcCCHHHHHHHHHHHHh----C--CCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 292 CARGELKLAESITKRLIG----N--EPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~----~--~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
.+...+++|-..+.+-.. . -|..-..|+..+-+|.-..++..|.+.++.
T Consensus 161 Vrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 161 VRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRD 215 (308)
T ss_pred hhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence 777777777776665432 1 233345688888888888999999988854
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=90.90 E-value=6.4 Score=33.21 Aligned_cols=97 Identities=11% Similarity=0.077 Sum_probs=67.2
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH--H
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD--VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG--C 254 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~--~ 254 (475)
..+..+..-|++.|+.++|++.|.++.+....|.. ..+..++..+...+++..+...+.+.........+...-+ .
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 46778889999999999999999999887655554 3466788888889999999888887765311111111111 1
Q ss_pred HHH--HHHHcCCHHHHHHHHHhC
Q 038542 255 MVD--MLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 255 li~--~~~~~g~~~~A~~~~~~m 275 (475)
... .+...+++.+|-+.|-..
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHcc
Confidence 111 233567888888888776
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.79 E-value=1 Score=27.80 Aligned_cols=29 Identities=31% Similarity=0.548 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHC
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQIS 106 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 106 (475)
.+|..+...|.+.|++++|.++|++..+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35667777888888888888888887775
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.4 Score=28.11 Aligned_cols=24 Identities=13% Similarity=0.063 Sum_probs=13.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 284 WRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
|..|...|...|++++|++++++.
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 445555555555555555555553
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.66 E-value=4 Score=33.44 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=8.5
Q ss_pred HHHcCCHHHHHHHHHhC
Q 038542 259 LCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m 275 (475)
+.+.|++.+|..+|+++
T Consensus 54 ~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 54 HIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 44445555555555554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.65 E-value=2.4 Score=38.55 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=72.7
Q ss_pred hcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC-C--------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 038542 39 FQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE-R--------DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC 109 (475)
Q Consensus 39 ~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 109 (475)
.|.+....+...++..-.... +++++...+-.+.. | ...+|--++. .-++++++.++..=.+.|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~-~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSRE-EIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhcccccc-chhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhccc
Confidence 355556666677777666666 88888888777653 2 2333333333 23677999999888899999
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcC
Q 038542 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQM 142 (475)
Q Consensus 110 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 142 (475)
||.+++..+++.+.+.+++..|.++.-.++...
T Consensus 133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999888877776543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.51 E-value=13 Score=33.70 Aligned_cols=141 Identities=12% Similarity=0.028 Sum_probs=87.1
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHH---HHHHHHHHHcCCh
Q 038542 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI-VSW---TSVIAGLAMHGRG 194 (475)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~---~~li~~~~~~g~~ 194 (475)
.......+++.++...+......... +..+--.|..+|...|+.+.|..++..++.... ..| .+-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 33457788999999999988876433 456677889999999999999999999885421 122 2223444444444
Q ss_pred HHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC
Q 038542 195 LEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG 263 (475)
Q Consensus 195 ~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g 263 (475)
.+...+-.+.-. .| |...-..+...+...|+.+.|.+.+-.+.++-.-.-|...-..+++.+.-.|
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 444444444433 34 5555556777778888888887765554442122223344444554444444
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.44 Score=27.24 Aligned_cols=31 Identities=13% Similarity=0.074 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 283 IWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
+|..+...+...|++++|...|++..+..|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777777788888888888887777663
|
... |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.42 E-value=13 Score=33.29 Aligned_cols=259 Identities=17% Similarity=0.242 Sum_probs=152.1
Q ss_pred cCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC----C---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC---CCC
Q 038542 40 QFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE----R---DSVSWSAMIGGYARLGLSTDAIDLFRQMQIS---GVC 109 (475)
Q Consensus 40 g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~----~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~ 109 (475)
+-.||+..-|..-+.-+-....+++|+.-|++..+ + .-.+.-.+|..+.+.|++++.+..|.+|... .+.
T Consensus 21 ~sEpdVDlENQYYnsK~l~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVT 100 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLKEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVT 100 (440)
T ss_pred CCCCCcchHhhhhccccccccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHh
Confidence 44666665554333322222267888887777643 1 2334556788899999999999988888642 111
Q ss_pred --CCHHHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC------
Q 038542 110 --PDEITMVTVLSACTDLGALEVGKWVESFIEKQ----M-VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR------ 176 (475)
Q Consensus 110 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~------ 176 (475)
-...+.++++.-.+...+.+.-..+++.-.+. . -..--.+-+.|...|...|.+.+-.+++.++.+.
T Consensus 101 rNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edG 180 (440)
T KOG1464|consen 101 RNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDG 180 (440)
T ss_pred ccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccC
Confidence 24557788888877777777777776654421 0 0001123356788888888888888888876421
Q ss_pred --C-------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHh-----cCCCHHHHHH-HHHHhh
Q 038542 177 --T-------IVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSACS-----HCGLVDKGRE-YFDSMK 240 (475)
Q Consensus 177 --~-------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~~-----~~g~~~~a~~-~~~~m~ 240 (475)
| ...|..-|..|....+-.+-..++++...-. -.|.+.. ..+++-|. +.|.+++|-. +|+..+
T Consensus 181 edD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 181 EDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred chhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 1 2467777888888888888778888765432 2344443 34555553 4677777754 444433
Q ss_pred hhcCC--CCCh---hHHHHHHHHHHHcCCHHHHHHHHHh--C-CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 241 NDFGI--IPKI---EHYGCMVDMLCRSGRVKEAHEFIQK--M-PI--EANPIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 241 ~~~~~--~p~~---~~~~~li~~~~~~g~~~~A~~~~~~--m-~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
. |.- .|.. --|-.|..++.+.|- .-|+. + |. .|.......|+.+|.. +++.+-+++++.
T Consensus 260 N-YDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyKNdPEIlAMTnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 260 N-YDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYKNDPEILAMTNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred c-ccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCCCCHHHHHHHHHHHHHhc-ccHHHHHHHHHh
Confidence 2 322 2222 234555666666552 11111 1 33 3445567778888754 455554444443
|
|
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=89.50 E-value=5.6 Score=29.51 Aligned_cols=88 Identities=14% Similarity=0.186 Sum_probs=59.7
Q ss_pred ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
..++|..|-+.+...+-. ...+--.-+..+...|++++|..+.+.+..||+..|-++-. .+.|..+++..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 346666666666554322 22222223445667899999999999999999999977654 467888888888888887
Q ss_pred cCCCCCHHHHHH
Q 038542 207 AGVPPDDVAFVG 218 (475)
Q Consensus 207 ~g~~p~~~t~~~ 218 (475)
.| .|...+|..
T Consensus 97 sg-~p~lq~Faa 107 (115)
T TIGR02508 97 SG-DPRLQTFVA 107 (115)
T ss_pred CC-CHHHHHHHH
Confidence 76 566665543
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=89.34 E-value=23 Score=34.78 Aligned_cols=179 Identities=14% Similarity=0.120 Sum_probs=125.0
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 038542 48 QNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA 127 (475)
Q Consensus 48 ~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~ 127 (475)
-++++..|.. | -+....+.+ |-...-+++..+.++..++-...+..+|...| -+...|..++..|... .
T Consensus 45 k~si~~lyis-g-~~~~s~~~l------~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~ 113 (711)
T COG1747 45 KNSIIALYIS-G-IISLSKQLL------DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-G 113 (711)
T ss_pred hhhhHHHHHH-H-HHHhhhccc------cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-C
Confidence 3455555544 3 333333333 44456678899999999999999999999865 5777888899998887 5
Q ss_pred hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh---------hHHHHHHHHHHHcCChHHHH
Q 038542 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI---------VSWTSVIAGLAMHGRGLEAV 198 (475)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~---------~~~~~li~~~~~~g~~~~A~ 198 (475)
-++-..+++++.+..+. |+....-|+..|-+ ++.+++..+|.+...+-+ ..|.-++..- ..+.+..+
T Consensus 114 n~~l~~lWer~ve~dfn-Dvv~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl 189 (711)
T COG1747 114 NEQLYSLWERLVEYDFN-DVVIGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFL 189 (711)
T ss_pred chhhHHHHHHHHHhcch-hHHHHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHH
Confidence 56777888888888765 56666777777777 888999888887643211 3566555421 34566666
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 199 ALFEEMLEA-GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 199 ~l~~~m~~~-g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
.+..+.... |..--.+.+.-+-.-|+...++.+|++++..+.+
T Consensus 190 ~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 190 RLQKKIQTKLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILE 233 (711)
T ss_pred HHHHHHHHhhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhh
Confidence 666666543 4444456666677788899999999999987665
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=89.34 E-value=2.6 Score=30.99 Aligned_cols=63 Identities=16% Similarity=0.290 Sum_probs=48.6
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
+.-++.+-++.+....+.|++....+.++||.+.+++..|.++|+..+.+-| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 4456667777777778899999999999999999999999999998885323 24456666553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.08 E-value=2.1 Score=35.08 Aligned_cols=78 Identities=17% Similarity=0.212 Sum_probs=41.9
Q ss_pred HHHHHHHHH---HHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 251 HYGCMVDML---CRSGRVKEAHEFIQKM-PIEAN---PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 251 ~~~~li~~~---~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
..+.||..+ .+.++.+++..+++.+ -++|. ..++... .+...|++.+|.++|+.+.+..|..+..-..+..
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~ 86 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEERAPGFPYAKALLAL 86 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 344444443 3456777777777766 23333 3333322 2556677777777777766666655444444444
Q ss_pred HHHhccC
Q 038542 324 IYAKLLR 330 (475)
Q Consensus 324 ~~~~~g~ 330 (475)
++...|+
T Consensus 87 CL~~~~D 93 (160)
T PF09613_consen 87 CLYALGD 93 (160)
T ss_pred HHHHcCC
Confidence 4444443
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.70 E-value=2.1 Score=34.42 Aligned_cols=51 Identities=8% Similarity=0.003 Sum_probs=24.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.++.+++..++..+.-+.|..+..-..-...+...|+|++|.++++.+.+.
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 444455555555554444444444444444444555555555555444443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.56 E-value=6.8 Score=31.61 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=8.4
Q ss_pred HHHcCCHHHHHHHHHhC
Q 038542 259 LCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m 275 (475)
+.+.|++++|.++|++.
T Consensus 54 ~i~rg~w~eA~rvlr~l 70 (153)
T TIGR02561 54 LIARGNYDEAARILREL 70 (153)
T ss_pred HHHcCCHHHHHHHHHhh
Confidence 34445555555555554
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.50 E-value=1.1 Score=25.58 Aligned_cols=28 Identities=14% Similarity=0.306 Sum_probs=21.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
.+|..+...|...|++++|+..|++..+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 4677788888888888888888888776
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.27 E-value=5.3 Score=36.40 Aligned_cols=98 Identities=14% Similarity=0.193 Sum_probs=71.4
Q ss_pred cCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC-C--------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 141 QMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-R--------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 141 ~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~--------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.|.+....+...++..-....+++++...+-++.. + ...+|--++. .=++++++.++..=.+.|+-|
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll----ky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL----KYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH----ccChHHHHHHHhCcchhcccc
Confidence 34455555566666666667788888888777653 2 2234433332 346778888888888899999
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
|.+|+..+++.+.+.++..+|.++...|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999998888777653
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.25 E-value=25 Score=33.85 Aligned_cols=63 Identities=17% Similarity=-0.010 Sum_probs=44.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~ 346 (475)
...|+.-|...|++.+|.+..+++---.-.+...+..++.+..+.|+-.....+++..-+.|+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 346788888999999998887765332234556788888888888887766666666555553
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.04 E-value=2.6 Score=31.35 Aligned_cols=60 Identities=17% Similarity=0.273 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 196 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
+..+-++.+....+.|++....+.|.||.+.+++..|.++|+.++.+-| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 5566666677777889999999999999999999999999999887534 33336777664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=87.96 E-value=17 Score=31.48 Aligned_cols=160 Identities=16% Similarity=0.112 Sum_probs=80.3
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..||-+.--+...|+++.|.+.|+...+... ....++..-.-++.-.|+++.|.+=+...-.+-.-.|-...|--++
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~-- 176 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN-- 176 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH--
Confidence 4566666666677777777777777766431 1122222222233445667666654444332101112111221111
Q ss_pred HHHcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------CchHHHHHHHHHhccC
Q 038542 259 LCRSGRVKEAHEFI-QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH-------ESNYVLLSHIYAKLLR 330 (475)
Q Consensus 259 ~~~~g~~~~A~~~~-~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~ 330 (475)
-+.-++.+|..-+ ++.. ..|..-|..-|..+.- |++. .+.+++++.....++ ..+|..|..-|...|+
T Consensus 177 -E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~ 252 (297)
T COG4785 177 -EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSLGD 252 (297)
T ss_pred -HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcccc
Confidence 2233445554333 3331 2344555554444322 2211 123334443322222 3578889999999999
Q ss_pred hhHHHHHHHHHHhCC
Q 038542 331 WEKKTKIREVMDKRG 345 (475)
Q Consensus 331 ~~~a~~~~~~m~~~~ 345 (475)
.++|..+|+.....+
T Consensus 253 ~~~A~~LfKLaiann 267 (297)
T COG4785 253 LDEATALFKLAVANN 267 (297)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998776544
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=87.55 E-value=0.49 Score=38.33 Aligned_cols=53 Identities=13% Similarity=0.145 Sum_probs=27.7
Q ss_pred HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHH
Q 038542 185 IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFD 237 (475)
Q Consensus 185 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~ 237 (475)
+..+.+.+.......+++.+...+...+....+.++..|++.+..+....+++
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 34444455555555566665554444445555666666666655555555444
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=87.03 E-value=4.5 Score=26.20 Aligned_cols=50 Identities=16% Similarity=0.192 Sum_probs=36.8
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCc
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGY 393 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~ 393 (475)
...+.-++.+.|++++|.+..+.+.+. .|...++..+-+.+.++|.+.|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999998863 35566676666666777887774
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.98 E-value=4.7 Score=31.83 Aligned_cols=65 Identities=12% Similarity=0.061 Sum_probs=41.3
Q ss_pred CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHh-CCCCCCc-hHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 280 NPIIWRTLISACCAR---GELKLAESITKRLIG-NEPMHES-NYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 280 ~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~-~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+..+--.+..++.+. .++++++.+++.+.+ -.|.... ....|.-++.+.|+++.+.++.+.+.+.
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 333333444455443 356777888888886 3344333 3345666788888999998888887753
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=86.94 E-value=12 Score=37.28 Aligned_cols=107 Identities=19% Similarity=0.131 Sum_probs=68.9
Q ss_pred HHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHH
Q 038542 155 DMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGRE 234 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~ 234 (475)
....+.|+++.|.++..+.. +..-|..|..+..+.|++..|.+.|.+.+. |..|+-.+...|+-+....
T Consensus 645 elal~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 645 ELALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred hhhhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 34456788888877766543 567788888888888888888888776654 3356666666776665444
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038542 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279 (475)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 279 (475)
+-...+++ |.. | .-.-+|...|+++++.+++.+-+.-|
T Consensus 714 la~~~~~~-g~~-N-----~AF~~~~l~g~~~~C~~lLi~t~r~p 751 (794)
T KOG0276|consen 714 LASLAKKQ-GKN-N-----LAFLAYFLSGDYEECLELLISTQRLP 751 (794)
T ss_pred HHHHHHhh-ccc-c-----hHHHHHHHcCCHHHHHHHHHhcCcCc
Confidence 44444443 432 1 22335667788888888887764334
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=86.81 E-value=53 Score=35.95 Aligned_cols=55 Identities=16% Similarity=0.154 Sum_probs=27.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
.+.+|..+|+|++|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+.
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~ 1025 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEY 1025 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHH
Confidence 34555556666666665555443 11111222244555555566665555555554
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=86.68 E-value=34 Score=33.64 Aligned_cols=97 Identities=13% Similarity=0.189 Sum_probs=57.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCC-C-CCC--HHHHHHHHHHHHh
Q 038542 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMP-I-EAN--PIIWRTLISACCA 293 (475)
Q Consensus 218 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~-~p~--~~~~~~li~~~~~ 293 (475)
.+..++-+.|+.++|.+.+++|.+.+...........|+.++...+.+.++..++.+-. + -|. ...|+..+-....
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRa 343 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKARA 343 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHHh
Confidence 45556667777777777777777643222234456667777777777777777777662 1 122 2344444333222
Q ss_pred cCC---------------HHHHHHHHHHHHhCCCCC
Q 038542 294 RGE---------------LKLAESITKRLIGNEPMH 314 (475)
Q Consensus 294 ~g~---------------~~~a~~~~~~~~~~~p~~ 314 (475)
-++ -..|.+++.++.+.+|..
T Consensus 344 v~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHV 379 (539)
T PF04184_consen 344 VGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHV 379 (539)
T ss_pred hccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCC
Confidence 222 123567788887777654
|
The molecular function of this protein is uncertain. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=85.85 E-value=28 Score=31.86 Aligned_cols=18 Identities=11% Similarity=0.008 Sum_probs=11.7
Q ss_pred HHcCChhHHHHHHHHHHH
Q 038542 88 ARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~ 105 (475)
.++|+.+.|..++.+...
T Consensus 4 ~~~~~~~~A~~~~~K~~~ 21 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKD 21 (278)
T ss_pred hhhCCHHHHHHHHHHhhh
Confidence 356677777777766654
|
It is also involved in sporulation []. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=85.81 E-value=19 Score=29.91 Aligned_cols=137 Identities=9% Similarity=0.149 Sum_probs=89.5
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHhC
Q 038542 198 VALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG--RVKEAHEFIQKM 275 (475)
Q Consensus 198 ~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m 275 (475)
+++++.+.+.+++|+...+..+++.+.+.|.+..-.+++ . +++-||.....+.+-.+.... -..-|.+.+.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL 88 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----Q-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRL 88 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----h-hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHh
Confidence 456666777888999999999999999998876654443 3 466677766666554444322 134456666665
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 276 PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 276 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
+. .+..++..+...|++-+|.++.+.....+. .....++.+-.+.++...-..+++-..+++.+
T Consensus 89 ~~-----~~~~iievLL~~g~vl~ALr~ar~~~~~~~---~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n~~ 152 (167)
T PF07035_consen 89 GT-----AYEEIIEVLLSKGQVLEALRYARQYHKVDS---VPARKFLEAAANSNDDQLFYAVFRFFEERNLR 152 (167)
T ss_pred hh-----hHHHHHHHHHhCCCHHHHHHHHHHcCCccc---CCHHHHHHHHHHcCCHHHHHHHHHHHHHhhHh
Confidence 42 244566778888999999888877644332 12345566666777777767777777665543
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.80 E-value=0.5 Score=38.25 Aligned_cols=85 Identities=13% Similarity=0.114 Sum_probs=59.3
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChh
Q 038542 15 FVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLST 94 (475)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~ 94 (475)
.++..+.+.+.+.....+++.+.+.+...+....+.++..|++.+ +.+...++++.... .-...++..+.+.|.++
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~-~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~ 87 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYD-PYEKLLEFLKTSNN---YDLDKALRLCEKHGLYE 87 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTT-TCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcC-CchHHHHHcccccc---cCHHHHHHHHHhcchHH
Confidence 356777778888888889999988776677888999999999987 77888887774332 33344556666666666
Q ss_pred HHHHHHHHH
Q 038542 95 DAIDLFRQM 103 (475)
Q Consensus 95 ~A~~~~~~m 103 (475)
+|.-++.++
T Consensus 88 ~a~~Ly~~~ 96 (143)
T PF00637_consen 88 EAVYLYSKL 96 (143)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHc
Confidence 666665554
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.70 E-value=1.9 Score=24.36 Aligned_cols=28 Identities=25% Similarity=0.424 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
..|..+...|.+.|++++|++.|++..+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3566777788888888888888887765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.64 E-value=5.1 Score=38.69 Aligned_cols=121 Identities=17% Similarity=0.152 Sum_probs=80.7
Q ss_pred HcCChHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 190 MHGRGLEAVA-LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 190 ~~g~~~~A~~-l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
..|+...|-+ ++.-++...-.|+.+...+.+ ..+.|+++.+.+.+..... -+.....+-.+++....+.|++++|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 3566655544 445555544456655544444 5678889988888877665 4455667788888888889999999
Q ss_pred HHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 269 HEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 269 ~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..+-..| +.+ .++.+......+....|-+|++.-.++++..+.|+.
T Consensus 377 ~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~ 424 (831)
T PRK15180 377 LSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPET 424 (831)
T ss_pred HHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChh
Confidence 8888777 211 144444444445566778888888888888777543
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=85.63 E-value=24 Score=32.10 Aligned_cols=136 Identities=15% Similarity=0.198 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 194 GLEAVALFEEMLE-AGVPPDDVAFVGLLSACSH--CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 194 ~~~A~~l~~~m~~-~g~~p~~~t~~~ll~~~~~--~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
..+|+++|+.... ..+--|......+++.... ......-.++.+.+...++-.++..+...++..++..+++.+-.+
T Consensus 144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~ 223 (292)
T PF13929_consen 144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ 223 (292)
T ss_pred HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHhCC-CCCCchHHHHHHHHHhcc
Q 038542 271 FIQKM----PIEANPIIWRTLISACCARGELKLAESITKR-----LIGNE-PMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 271 ~~~~m----~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----~~~~~-p~~~~~~~~l~~~~~~~g 329 (475)
+.+.. +...|...|..+|..-...|+......+..+ +.+.+ +.++..-..|-..+.+.|
T Consensus 224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd 292 (292)
T PF13929_consen 224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD 292 (292)
T ss_pred HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.63 E-value=2 Score=25.67 Aligned_cols=28 Identities=14% Similarity=0.287 Sum_probs=20.0
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
.+++.|...|...|++++|+.++++...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677777778888888888877777654
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.60 E-value=49 Score=34.41 Aligned_cols=147 Identities=13% Similarity=0.119 Sum_probs=89.2
Q ss_pred cCCCcHHHHHHHHHHHHhcCCC---ChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGD---DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAID 98 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~---~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 98 (475)
+.+.+++|...-+... |..| -..++...|+.+.-.| ++++|-...-.|-..+..-|---+.-+...++......
T Consensus 368 ~~k~yeeAl~~~k~~~--~~~~~~~i~kv~~~yI~HLl~~~-~y~~Aas~~p~m~gn~~~eWe~~V~~f~e~~~l~~Ia~ 444 (846)
T KOG2066|consen 368 EKKKYEEALDAAKASI--GNEERFVIKKVGKTYIDHLLFEG-KYDEAASLCPKMLGNNAAEWELWVFKFAELDQLTDIAP 444 (846)
T ss_pred HhhHHHHHHHHHHhcc--CCccccchHHHHHHHHHHHHhcc-hHHHHHhhhHHHhcchHHHHHHHHHHhccccccchhhc
Confidence 3445555555544332 3334 3457788888887777 99999998888888888888888888877776654333
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------------C-------CCCCccHHHHHHHHHHh
Q 038542 99 LFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ------------M-------VNRSVGLCNALIDMFAK 159 (475)
Q Consensus 99 ~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------------~-------~~~~~~~~~~li~~y~~ 159 (475)
+ +.......+...|..+|..+.. .+. ..+++.+.+. . ..-+...-..|+..|..
T Consensus 445 ~---lPt~~~rL~p~vYemvLve~L~-~~~---~~F~e~i~~Wp~~Lys~l~iisa~~~q~~q~Se~~~L~e~La~LYl~ 517 (846)
T KOG2066|consen 445 Y---LPTGPPRLKPLVYEMVLVEFLA-SDV---KGFLELIKEWPGHLYSVLTIISATEPQIKQNSESTALLEVLAHLYLY 517 (846)
T ss_pred c---CCCCCcccCchHHHHHHHHHHH-HHH---HHHHHHHHhCChhhhhhhHHHhhcchHHHhhccchhHHHHHHHHHHH
Confidence 2 2221112344556666655544 111 1111111110 0 01122344568999999
Q ss_pred cCCHHHHHHHHHhcCCCCh
Q 038542 160 CGDVDKALKLFRSMNGRTI 178 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~~~~ 178 (475)
.+++.+|...+-...++++
T Consensus 518 d~~Y~~Al~~ylklk~~~v 536 (846)
T KOG2066|consen 518 DNKYEKALPIYLKLQDKDV 536 (846)
T ss_pred ccChHHHHHHHHhccChHH
Confidence 9999999999998887654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=85.34 E-value=1.6 Score=24.52 Aligned_cols=27 Identities=26% Similarity=0.239 Sum_probs=15.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 287 LISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
+..++...|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344455556666666666666555553
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.21 E-value=25 Score=30.82 Aligned_cols=21 Identities=10% Similarity=0.060 Sum_probs=15.8
Q ss_pred HHhcCCHHHHHHHHHHHHhCC
Q 038542 291 CCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~ 311 (475)
-...+++.+|+.+++++....
T Consensus 164 aa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 345678889999998887544
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=84.69 E-value=9.4 Score=36.97 Aligned_cols=126 Identities=12% Similarity=0.011 Sum_probs=85.4
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 038542 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~ 301 (475)
...|+.-.|.+-+....+.+.-.|+ +.......+...|.++.+...+... -+.....+...++......|++++|.
T Consensus 300 ~~~gd~~aas~~~~~~lr~~~~~p~--~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~ 377 (831)
T PRK15180 300 LADGDIIAASQQLFAALRNQQQDPV--LIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREAL 377 (831)
T ss_pred hhccCHHHHHHHHHHHHHhCCCCch--hhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHH
Confidence 3457776665544444442333444 3334444567789999999998877 23345677888999999999999999
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCC
Q 038542 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPG 351 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~ 351 (475)
...+.|+..+-.++.....-...-...|-++++...|+++..-+-..+.|
T Consensus 378 s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 378 STAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 99999998775555544433334456688999999998887654333333
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.50 E-value=6.9 Score=33.42 Aligned_cols=74 Identities=14% Similarity=-0.005 Sum_probs=37.6
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCChH
Q 038542 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN-------GRTIVSWTSVIAGLAMHGRGL 195 (475)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~ 195 (475)
++.|+ +.|...|-.+...+.-.++....+|...|. ..|.++|..++.+.. ..|+..+.+|++.|.+.|+++
T Consensus 118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 118 SRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 33343 344455555554444445555555555554 345555555554432 224555666666666666666
Q ss_pred HHH
Q 038542 196 EAV 198 (475)
Q Consensus 196 ~A~ 198 (475)
.|.
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 553
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=84.25 E-value=2.2 Score=39.15 Aligned_cols=108 Identities=10% Similarity=0.060 Sum_probs=75.8
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCH
Q 038542 221 SACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGEL 297 (475)
Q Consensus 221 ~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~ 297 (475)
+-|.+.|.+++|+..|..-.. ..| ++.+|..-..+|.+..++..|+.-.... .+. .-+..|.--+.+-...|+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred hhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 568899999999999987664 355 8888888899999999998887655544 111 1233455555555566788
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 298 KLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
.+|.+-++.+++++|.+. -|-..|++.....++.
T Consensus 182 ~EAKkD~E~vL~LEP~~~----ELkK~~a~i~Sl~E~~ 215 (536)
T KOG4648|consen 182 MEAKKDCETVLALEPKNI----ELKKSLARINSLRERK 215 (536)
T ss_pred HHHHHhHHHHHhhCcccH----HHHHHHHHhcchHhhh
Confidence 889999999999999853 3444455555444443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.13 E-value=6.8 Score=29.22 Aligned_cols=48 Identities=17% Similarity=0.231 Sum_probs=32.7
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 275 m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|..++
T Consensus 39 ~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 39 YDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp SSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred cccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 367789999999999999999999999999988755433333565544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.99 E-value=7.2 Score=28.76 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=34.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 275 MPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 275 m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
+.+-|++.+..+-+.||.+.+++..|.++++-+...-..+...|..++
T Consensus 36 ~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 36 YDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 367788888888899999999999999988877744332334454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=83.96 E-value=2 Score=24.71 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=10.9
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELG 65 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A 65 (475)
+.+..+|+.|...|...| ++++|
T Consensus 10 P~n~~a~~nla~~~~~~g-~~~~A 32 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQG-DYEEA 32 (34)
T ss_pred CCCHHHHHHHHHHHHHCc-CHHhh
Confidence 334444445555555444 44444
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=83.19 E-value=1.7 Score=23.22 Aligned_cols=23 Identities=4% Similarity=-0.032 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhccChhHHHHHHH
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
....|..++...|++++|..+++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34566677777777777776654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=82.57 E-value=33 Score=30.13 Aligned_cols=91 Identities=8% Similarity=0.200 Sum_probs=49.6
Q ss_pred CCHHHHHHHHHHhhhhcCCC-CChhHHHHHH---HHHHHcCCHHHHHHHHHhC---CCCCCHHHHHH---HH-HHHHh--
Q 038542 227 GLVDKGREYFDSMKNDFGII-PKIEHYGCMV---DMLCRSGRVKEAHEFIQKM---PIEANPIIWRT---LI-SACCA-- 293 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~-p~~~~~~~li---~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~---li-~~~~~-- 293 (475)
.+++.|+..|+...+-|... .+...--|++ +.-+..+++.+|.++|++. .+..+..-|.. ++ .+++.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 45556666665554432221 2222222333 3335678889999998887 23333333322 22 22222
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCch
Q 038542 294 RGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
..+.-.+...+++..+.+|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 256667788888888888865443
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.41 E-value=2.9 Score=22.25 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=13.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFR 171 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~ 171 (475)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 445566666666666666654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.41 E-value=2.8 Score=22.54 Aligned_cols=30 Identities=17% Similarity=0.131 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 283 IWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
.|..+...+...++++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555566666666666666655544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.91 E-value=34 Score=29.73 Aligned_cols=171 Identities=11% Similarity=-0.031 Sum_probs=98.6
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 038542 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEK 140 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 140 (475)
|+..|+.+--. -+..||-|.--+...|+++.|.+.|+...+.... ...+...-.-++--.|++..|.+-+...-+
T Consensus 87 DftQaLai~P~----m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~-y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ 161 (297)
T COG4785 87 DFSQALAIRPD----MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRYKLAQDDLLAFYQ 161 (297)
T ss_pred hhhhhhhcCCC----cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCc-chHHHhccceeeeecCchHhhHHHHHHHHh
Confidence 45555544222 3457888888889999999999999988875321 233333323334456788888766655544
Q ss_pred cCC-CCCccHHHHHHHHHHhcCCHHHHHH-HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC------
Q 038542 141 QMV-NRSVGLCNALIDMFAKCGDVDKALK-LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD------ 212 (475)
Q Consensus 141 ~~~-~~~~~~~~~li~~y~~~g~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------ 212 (475)
... +|-...|--++ -..-+..+|.. +.++....|-.-|..-|-.|.-..-.+ ..++++...- -..+
T Consensus 162 ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~d~e~WG~~iV~~yLgkiS~--e~l~~~~~a~-a~~n~~~Ae~ 235 (297)
T COG4785 162 DDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKSDKEQWGWNIVEFYLGKISE--ETLMERLKAD-ATDNTSLAEH 235 (297)
T ss_pred cCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhccHhhhhHHHHHHHHhhccH--HHHHHHHHhh-ccchHHHHHH
Confidence 421 22222222222 22335556554 445555566666665555544222222 2234443332 1211
Q ss_pred -HHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 213 -DVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 213 -~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
..||--|..-+...|+.++|..+|+-....
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 257888999999999999999999887763
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=81.76 E-value=42 Score=30.75 Aligned_cols=241 Identities=13% Similarity=0.027 Sum_probs=143.6
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh-
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL- 128 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~- 128 (475)
++...|.+.. ...+++.+..+|....-..+.++...|. .++...+..+.. .+|...-...+.++++.|+.
T Consensus 15 ~~~~~~~~~~-----~~~L~~~L~d~d~~vR~~A~~aL~~~~~-~~~~~~l~~ll~---~~d~~vR~~A~~aLg~lg~~~ 85 (280)
T PRK09687 15 SLYSQCKKLN-----DDELFRLLDDHNSLKRISSIRVLQLRGG-QDVFRLAIELCS---SKNPIERDIGADILSQLGMAK 85 (280)
T ss_pred HHHHHHhhcc-----HHHHHHHHhCCCHHHHHHHHHHHHhcCc-chHHHHHHHHHh---CCCHHHHHHHHHHHHhcCCCc
Confidence 4555554433 3344445566777777777888877774 445555555554 34555555667777777763
Q ss_pred ---HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH-----HHHHHHHHh-cCCCChhHHHHHHHHHHHcCChHHHHH
Q 038542 129 ---EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV-----DKALKLFRS-MNGRTIVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 129 ---~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-----~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~ 199 (475)
..+...+..+... .++..+-...+.+++..+.- ..+...+.. +.+++...--..+.++.+.|+ .+|+.
T Consensus 86 ~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~-~~ai~ 162 (280)
T PRK09687 86 RCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVIND-EAAIP 162 (280)
T ss_pred cchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCC-HHHHH
Confidence 3455555555332 45666666666666665421 233333433 334555555566777777775 56777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCC-CHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCG-LVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (475)
.+-.+.. .+|...-...+.++.+.+ ..+.+...+..+.. .++..+-...+.++++.|...-.-.+++.+..
T Consensus 163 ~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~A~~aLg~~~~~~av~~Li~~L~~- 234 (280)
T PRK09687 163 LLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIEAIIGLALRKDKRVLSVLIKELKK- 234 (280)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHHHHHHHHccCChhHHHHHHHHHcC-
Confidence 7777765 345444455555666543 23455555555554 35777778888888888885433344444432
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
++ .....+.++...|.. +|...+.++.+..|+
T Consensus 235 ~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~~d 266 (280)
T PRK09687 235 GT--VGDLIIEAAGELGDK-TLLPVLDTLLYKFDD 266 (280)
T ss_pred Cc--hHHHHHHHHHhcCCH-hHHHHHHHHHhhCCC
Confidence 33 334677788888885 688888888876663
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=81.53 E-value=4.1 Score=24.21 Aligned_cols=26 Identities=19% Similarity=0.219 Sum_probs=13.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 283 IWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+++.|...|...|++++|..+++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 44555555555555555555555543
|
|
| >PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion) | Back alignment and domain information |
|---|
Probab=81.53 E-value=18 Score=27.36 Aligned_cols=87 Identities=15% Similarity=0.180 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038542 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEML 205 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 205 (475)
...++|..|.+.+...+- ....+--.-+..+...|++++|...=.....||...|-+|-. .+.|..+++...+.++.
T Consensus 20 HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRLA 96 (116)
T ss_dssp T-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 345677777777766543 122222233445667777777744444455667777765443 46677777777777666
Q ss_pred HcCCCCCHHHH
Q 038542 206 EAGVPPDDVAF 216 (475)
Q Consensus 206 ~~g~~p~~~t~ 216 (475)
..| .|....|
T Consensus 97 ~~g-~~~~q~F 106 (116)
T PF09477_consen 97 SSG-SPELQAF 106 (116)
T ss_dssp T-S-SHHHHHH
T ss_pred hCC-CHHHHHH
Confidence 655 3444444
|
The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=80.95 E-value=24 Score=35.45 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=15.1
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQ 104 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (475)
+..-|..|..+..+.+++..|.+.|.+..
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 34445555555555555555555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.91 E-value=65 Score=32.40 Aligned_cols=128 Identities=12% Similarity=0.030 Sum_probs=72.5
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHH
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYA 88 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 88 (475)
.+++++.---...+++.++.++..++.. .|.-..-|......-.+.| ..+.+.++|++-.+ .++..|.....-+.
T Consensus 47 ~wt~li~~~~~~~~~~~~r~~y~~fL~k-yPl~~gyW~kfA~~E~klg-~~~~s~~Vfergv~aip~SvdlW~~Y~~f~~ 124 (577)
T KOG1258|consen 47 AWTTLIQENDSIEDVDALREVYDIFLSK-YPLCYGYWKKFADYEYKLG-NAENSVKVFERGVQAIPLSVDLWLSYLAFLK 124 (577)
T ss_pred chHHHHhccCchhHHHHHHHHHHHHHhh-CccHHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 3444444333344455566666666543 1222234555555556666 78888888877654 25566666555444
Q ss_pred -HcCChhHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc
Q 038542 89 -RLGLSTDAIDLFRQMQIS-GVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQ 141 (475)
Q Consensus 89 -~~g~~~~A~~~~~~m~~~-g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 141 (475)
..|+.+...++|+..... |..- ...-|--.+.--...+++.....+++++++.
T Consensus 125 n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 125 NNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred ccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 346667777777776653 2211 2223444555556667777777777777664
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.24 E-value=8.6 Score=33.20 Aligned_cols=64 Identities=11% Similarity=0.086 Sum_probs=48.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
.+.-+..+.+.+.+.+|....+.- .-+| |...-..++..++..|++++|..-++-+-++.|...
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccc
Confidence 345566778888888888877654 4455 566677788899999999999988888888887653
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=80.14 E-value=18 Score=30.91 Aligned_cols=42 Identities=12% Similarity=0.029 Sum_probs=18.7
Q ss_pred cCChHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhcCCCHHHH
Q 038542 191 HGRGLEAVALFEEMLEA---GVPPDDVAFVGLLSACSHCGLVDKG 232 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~---g~~p~~~t~~~ll~~~~~~g~~~~a 232 (475)
..+.++|..++.+..+. +-.+|+..+.+|++.+.+.|+.+.|
T Consensus 153 krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 153 KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 44445555554444432 1133444444444444444444443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 66.8 bits (161), Expect = 8e-12
Identities = 30/201 (14%), Positives = 63/201 (31%), Gaps = 7/201 (3%)
Query: 89 RLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVG 148
RL A L + + P E + +L +L+V + + ++
Sbjct: 69 RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128
Query: 149 LCNALIDMFAKCGDVDKALKLFRSMNGR-------TIVSWTSVIAGLAMHGRGLEAVALF 201
A + A L +G+ T+ + +V+ G A G E V +
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188
Query: 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261
+ +AG+ PD +++ L E + G+ + ++ R
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248
Query: 262 SGRVKEAHEFIQKMPIEANPI 282
+ +K H+ +
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 54.4 bits (129), Expect = 6e-08
Identities = 41/364 (11%), Positives = 95/364 (26%), Gaps = 75/364 (20%)
Query: 6 VSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELG 65
SP + +L+ G L++ ++ G + Q + L
Sbjct: 88 ESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLT-DQLPLA 146
Query: 66 RKVFDEMSER-------DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118
+ + ++A++ G+AR G + + + ++ +G+ PD ++
Sbjct: 147 HHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY--- 203
Query: 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI 178
A + + ++
Sbjct: 204 --------------------------------AAALQCMGRQDQDAGTIE---------- 221
Query: 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238
E+M + G+ + LLS ++ + +
Sbjct: 222 --------------------RCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261
Query: 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298
+ P + + D+ + GRV + ++ + A R +
Sbjct: 262 FSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELAS--RVCVV 319
Query: 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELD 358
E T + ++ L L R ++TK R + + L LD
Sbjct: 320 SVEKPTLPSKEVKHARKTLKTLRDQWEKALCRALRETKNRLEREVYEGRFSLYPFLCLLD 379
Query: 359 NEIY 362
Sbjct: 380 EREV 383
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.8 bits (117), Expect = 2e-06
Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 9/130 (6%)
Query: 1 MLEYGVSPNKFTYPFVLKACAGIGDLNLGKSV---HGAVLKFQFGDDIHVQNTLVHMYGS 57
+ +S + K C L L + H + + + + N ++ +
Sbjct: 118 HSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWAR 177
Query: 58 CEGGIELGRKVFDEMSER----DSVSWSAMIGGYARLGLSTDAI-DLFRQMQISGVCPDE 112
G + V + + D +S++A + R I QM G+
Sbjct: 178 Q-GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236
Query: 113 ITMVTVLSAC 122
+ +LS
Sbjct: 237 LFTAVLLSEE 246
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 9e-12
Identities = 69/470 (14%), Positives = 139/470 (29%), Gaps = 123/470 (26%)
Query: 48 QNTLVH-MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGG--YARLGLSTDAIDLFRQMQ 104
+N L+ + GS G+ M + L + +Q
Sbjct: 151 KNVLIDGVLGS-------GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203
Query: 105 ISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV- 163
+ T S + L + +++ + + + ++ N L+ + +V
Sbjct: 204 --KLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKP--YENCLLVL----LNVQ 254
Query: 164 DKALKLFRSMNG--RTIV-----SWTSVIAG-------LAMHGRGL---EAVALFEEMLE 206
+ K + + N + ++ T ++ L H L E +L + L
Sbjct: 255 NA--KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL- 311
Query: 207 AGVPPDDVAFVGLLSACS----HCGLVDKGREYFDSMKNDFGIIPKIEHYGC--MVDMLC 260
P D+ + ++ S+++ +H C + ++
Sbjct: 312 -DCRPQDLP----REVLTTNPRRLSII--AE----SIRDGLATWDNWKHVNCDKLTTIIE 360
Query: 261 RSGRVKEAHEFIQ------------KMPIEANPIIWRTLISACCARGELKLAESITKRLI 308
S V E E+ + +P +IW +I + + + + L+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDV---MVVVNKLHKYSLV 417
Query: 309 GNEPMHESNYVLLSHIYAKLLR-WEKKTKI-REVMDK-RGMKKIPGSTLI--ELDNEIYE 363
+P ES + IY +L E + + R ++D K LI LD Y
Sbjct: 418 EKQP-KESTISIP-SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Query: 364 FVCGDKSHHQSK-EIYEMLDE----------MGRKMKKAGYVPTTSEVLLD--------- 403
+ HH E E + + +K++ S +L+
Sbjct: 476 HI----GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 404 --INEEDK---------EDALNKHSEKLAIA-------FALLKTPPGTPI 435
I + D D L K E L + AL+ I
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALM--AEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 59.5 bits (143), Expect = 2e-09
Identities = 64/407 (15%), Positives = 112/407 (27%), Gaps = 113/407 (27%)
Query: 139 EKQMVNRSVGLCNALIDMFAK---CGDVDKALK-LFRSMNGRTIVSWTSVIAGL-----A 189
E Q + + + D F C DV K + I+ ++G
Sbjct: 13 EHQYQYKD--ILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT 70
Query: 190 MHGRGLEAVALF-EEMLEAGVPPDDVAFVGLLSACSH-----CGLVDKGREYFDSMKNDF 243
+ + E V F EE+L + F L+S + E D + ND
Sbjct: 71 LLSKQEEMVQKFVEEVLR-----INYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 244 GIIPK-----IEHY----------------------GC----MVDMLCRSGRVKEAHEFI 272
+ K ++ Y G + +C S ++
Sbjct: 124 QVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS------YKVQ 177
Query: 273 QKMPIEANPIIWRTLISACCARGELKLAESITKRLIGN---EPMHESNYVLLSHIYAKLL 329
KM I W L + L++ + + ++ N H SN L H
Sbjct: 178 CKMD---FKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH------ 228
Query: 330 RWEKKTKIREVMDKRGMKKIPGSTLIELDN-------EIYEFVC------GDKSHHQSKE 376
+ ++R ++ + + L+ L N + C K
Sbjct: 229 --SIQAELRRLLKSKPYEN----CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ------ 276
Query: 377 IYEMLDEMGRK-----MKKAGYVPTTSEVL----LDINEED-KEDALNKHSEKLAIAFAL 426
+ + L P + L LD +D + L + +L+I
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 427 LKTPPGTPIRIVKNLRVCNDCHSATKFISKIYNREIVVRDRHRFHHF 473
++ T N + N C T I N R F
Sbjct: 337 IRDGLATW----DNWKHVN-CDKLTTIIESSLNVLEPAEYRKMFDRL 378
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.88 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.79 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.77 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.74 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.73 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.73 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.72 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.65 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.62 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.59 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.59 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.56 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.56 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.55 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.55 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.54 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.54 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.53 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.53 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.51 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.5 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.45 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.44 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.44 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.38 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.37 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.35 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.26 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.21 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.17 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.16 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.12 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.1 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.07 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.06 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.05 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.04 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.02 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.0 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.0 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.98 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.98 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.93 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.92 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.9 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.89 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.88 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.85 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.83 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.79 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.79 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.79 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.77 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.76 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.75 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.75 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.72 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.71 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.7 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.68 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.67 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.67 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.67 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.65 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.65 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.64 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.63 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.62 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.61 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.6 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.57 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.53 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.53 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.52 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.5 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.5 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.49 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.49 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.49 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.46 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.45 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.44 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.44 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.42 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.41 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.41 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.4 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.4 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.4 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.39 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.38 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.38 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.35 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.33 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.32 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.31 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.3 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.3 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.26 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.26 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.25 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.24 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.24 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.23 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.22 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.17 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.15 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.15 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.14 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.13 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.09 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.09 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.08 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.08 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.07 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.05 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.03 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.02 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.98 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.97 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.97 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.91 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.86 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.81 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.81 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.8 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.79 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.78 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.72 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.58 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.53 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.53 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.42 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.41 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.34 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.34 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.32 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.31 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.28 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.23 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.17 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.13 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.11 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.89 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.85 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.81 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.79 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.79 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.77 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.62 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.51 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.48 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.24 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.24 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.22 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.81 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.62 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.51 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 95.47 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.08 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.55 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.35 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.19 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.75 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.0 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 92.55 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 92.46 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.24 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.15 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.73 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 90.8 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 90.57 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 90.46 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 90.38 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.12 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.51 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.68 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 87.53 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.43 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.86 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 86.48 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.2 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 86.17 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 86.02 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 85.64 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 85.42 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.98 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.97 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 83.12 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 82.65 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 82.39 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 81.16 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 80.5 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-32 Score=274.83 Aligned_cols=333 Identities=8% Similarity=-0.018 Sum_probs=299.3
Q ss_pred CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHH----------------------------------
Q 038542 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNT---------------------------------- 50 (475)
Q Consensus 5 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~---------------------------------- 50 (475)
|.+++..+|+.++.+|.+.|++++|.++|+.+.+.+ +.+...+..
T Consensus 195 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 273 (597)
T 2xpi_A 195 GIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRS 273 (597)
T ss_dssp SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHH
Confidence 556678899999999999999999999999999875 233333333
Q ss_pred ----HHHHHHhCCCCHHHHHHHHhccCC--CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038542 51 ----LVHMYGSCEGGIELGRKVFDEMSE--RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124 (475)
Q Consensus 51 ----li~~~~~~gg~~~~A~~~f~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (475)
++.+|.++| ++++|.++|+++.+ ++..+|+.++.+|.+.|++++|+++|+++...+ +.+..++..++.++.+
T Consensus 274 ~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 351 (597)
T 2xpi_A 274 LYMLKLNKTSHED-ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHE 351 (597)
T ss_dssp HHHTTSCTTTTHH-HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHcCcc-hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHH
Confidence 355667788 99999999999987 799999999999999999999999999999765 3477889999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
.|++++|..+++.+.+.. +.+..+++.++.+|.++|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|
T Consensus 352 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 430 (597)
T 2xpi_A 352 SGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAY 430 (597)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 999999999999999764 5578899999999999999999999999875 347889999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC------
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM------ 275 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m------ 275 (475)
+++.+.+ +++..++..++.+|.+.|++++|.++|+.+.+. .+.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 431 ~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 507 (597)
T 2xpi_A 431 TTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKK 507 (597)
T ss_dssp HHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhc
Confidence 9999874 567889999999999999999999999999873 3457899999999999999999999999988
Q ss_pred -CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 276 -PIEAN--PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 276 -~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+..|+ ..+|..++.+|...|++++|.+.++++.+.+|.++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 508 ~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 508 TQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp SCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 55787 7899999999999999999999999999999999999999999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-33 Score=281.92 Aligned_cols=374 Identities=11% Similarity=0.004 Sum_probs=317.5
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC--CCChhHHHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS--ERDSVSWSAMIG 85 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~--~~~~~~~~~li~ 85 (475)
++...|+.++..|.+.|+++.|..+++.+.+. .|+..++..++..|.+.| ++++|..+|+.+. .++..+|+.++.
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~l~~ 158 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTG-DYARAKCLLTKEDLYNRSSACRYLAAF 158 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTT-CHHHHHHHHHHTCGGGTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcC-cHHHHHHHHHHHhccccchhHHHHHHH
Confidence 57778999999999999999999999999865 578889999999999999 9999999999984 578999999999
Q ss_pred HHHHcCChhHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHH
Q 038542 86 GYARLGLSTDAIDLFRQMQIS---------------GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 150 (475)
+|.+.|++++|+++|+++... |.+++..+|..++.++.+.|++++|...|+++.+.+.. +...+
T Consensus 159 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~ 237 (597)
T 2xpi_A 159 CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAF 237 (597)
T ss_dssp HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHH
Confidence 999999999999999953322 23446789999999999999999999999999987532 33332
Q ss_pred --------------------------------------HHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHH
Q 038542 151 --------------------------------------NALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAM 190 (475)
Q Consensus 151 --------------------------------------~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 190 (475)
+.++.+|.+.|++++|.++|+++.+ ++..+|+.++.+|.+
T Consensus 238 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (597)
T 2xpi_A 238 DQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFV 317 (597)
T ss_dssp HHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHH
T ss_pred HHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHH
Confidence 2335677789999999999999987 789999999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|..+++.+.+ ..+.+..++..++.+|.+.|++++|.+
T Consensus 318 ~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~ 394 (597)
T 2xpi_A 318 RSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVD--RHPEKAVTWLAVGIYYLCVNKISEARR 394 (597)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHh--hCcccHHHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999875 44778899999999999999999999999986 445678899999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCcc
Q 038542 271 FIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKK 348 (475)
Q Consensus 271 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~ 348 (475)
+|+++ ...| +..+|+.++.+|.+.|++++|.++|+++.+..|.+..+|..++.+|.+.|++++|.++++.+.+..-.
T Consensus 395 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 473 (597)
T 2xpi_A 395 YFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY- 473 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-
Confidence 99988 3334 68899999999999999999999999999999999999999999999999999999999999875321
Q ss_pred CCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcccCC
Q 038542 349 IPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVPTT 397 (475)
Q Consensus 349 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~pd~ 397 (475)
....|.. +...+...++.+++.+.++++.+...+.|..|+.
T Consensus 474 -~~~~~~~-------l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~ 514 (597)
T 2xpi_A 474 -DPLLLNE-------LGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP 514 (597)
T ss_dssp -CHHHHHH-------HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred -ChHHHHH-------HHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence 1111211 1122345678889999999888777777888874
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-30 Score=257.09 Aligned_cols=183 Identities=14% Similarity=0.153 Sum_probs=147.8
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC---------hHHHHHHHHHHHHcCCCCCcc
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGA---------LEVGKWVESFIEKQMVNRSVG 148 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 148 (475)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+++|.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777788888888888888888888888888888888888888776543 577888888888888888888
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMN----GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
+|++||++|++.|++++|.++|++|. .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||++|+.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 88888888888888888888888775 35778888888888888888888888888888888888888888888888
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
+.|++++|.+++++|.+. |..|+..||+.++..|+.
T Consensus 187 ~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 888888888888888875 888888888888887765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=245.82 Aligned_cols=200 Identities=12% Similarity=0.127 Sum_probs=173.3
Q ss_pred hHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC---------H
Q 038542 94 TDAIDLFRQMQISGVCPDE-ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD---------V 163 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~---------~ 163 (475)
..+..+.+++.+.++.+.+ ..++.+|.+|++.|++++|.++|++|.+.|+.||..+||+||.+|++.+. +
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l 86 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL 86 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence 4456677788877776654 46888999999999999999999999999999999999999999998765 7
Q ss_pred HHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 164 DKALKLFRSMN----GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 164 ~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
++|.++|++|. .||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|
T Consensus 87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M 166 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM 166 (501)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence 89999999996 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhc
Q 038542 240 KNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM---PIEANPIIWRTLISACCAR 294 (475)
Q Consensus 240 ~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~ 294 (475)
.+. |+.||..+|++||.+|++.|++++|.++|++| +..|+..||+.++..|+..
T Consensus 167 ~~~-G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 167 VES-EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHT-TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred Hhc-CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 986 99999999999999999999999999999999 8999999999999998764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=9.6e-25 Score=210.44 Aligned_cols=330 Identities=12% Similarity=0.050 Sum_probs=281.5
Q ss_pred CCCc-chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHH
Q 038542 7 SPNK-FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSA 82 (475)
Q Consensus 7 ~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~ 82 (475)
.|+. ..+..+...+...|+++.|...++.+.+.. +.+..+|..+...|.+.| ++++|...|+++.+ | +..+|..
T Consensus 29 ~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~ 106 (388)
T 1w3b_A 29 EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFIDGYIN 106 (388)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCcchHHHHHH
Confidence 3544 345555567788899999999999888864 667788999999999998 99999999998753 3 5668999
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 038542 83 MIGGYARLGLSTDAIDLFRQMQISGVCPD-EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 161 (475)
+..++.+.|++++|++.|+++... .|+ ...+..+...+...|++++|...+..+.+.. +.+..++..+...|.+.|
T Consensus 107 l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 183 (388)
T 1w3b_A 107 LAAALVAAGDMEGAVQAYVSALQY--NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQG 183 (388)
T ss_dssp HHHHHHHHSCSSHHHHHHHHHHHH--CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999875 454 4566677778888999999999999998874 335678899999999999
Q ss_pred CHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHH
Q 038542 162 DVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDS 238 (475)
Q Consensus 162 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~ 238 (475)
++++|...|+++. ..+...|..+...+...|++++|+..|++..... +.+..++..+..++...|++++|...|+.
T Consensus 184 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 262 (388)
T 1w3b_A 184 EIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRR 262 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999999875 2356788889999999999999999999988863 34578889999999999999999999999
Q ss_pred hhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 239 MKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 239 m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
+.+ ..+.+...|..+..++.+.|++++|.+.|+++ .. +++..+|..+...+...|++++|...++++.+..|.+..
T Consensus 263 al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 340 (388)
T 1w3b_A 263 AIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA 340 (388)
T ss_dssp HHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHH
T ss_pred HHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHH
Confidence 987 33445778999999999999999999999988 22 347889999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
++..++.+|.+.|++++|.+.++++.+.
T Consensus 341 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 341 AHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999998763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=5.8e-24 Score=204.95 Aligned_cols=320 Identities=13% Similarity=0.097 Sum_probs=281.2
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh
Q 038542 17 LKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLS 93 (475)
Q Consensus 17 l~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~ 93 (475)
...+.+.|++++|.+.+..+.+.. +.+...+..+...+.+.| ++++|...++...+ .+..+|+.+..+|.+.|++
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~-~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence 456778899999999999998874 555667777888888888 99999999987653 4778999999999999999
Q ss_pred hHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 94 TDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
++|++.|+++... .| +..++..+..++...|++++|...+..+.+.. +.+..++..+...|...|++++|.+.|++
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 9999999999875 45 45678999999999999999999999999875 33566788899999999999999999998
Q ss_pred cCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh
Q 038542 173 MNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI 249 (475)
Q Consensus 173 ~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~ 249 (475)
+.. .+..+|+.+...|...|++++|+..|+++.+.+ +.+...+..+...+...|++++|...++..... .+.+.
T Consensus 161 al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~ 237 (388)
T 1w3b_A 161 AIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHA 237 (388)
T ss_dssp HHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCH
Confidence 752 367899999999999999999999999999864 445778899999999999999999999998863 23357
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 327 (475)
..+..+..+|.+.|++++|.+.|+++ ...| +..+|..+...+...|++++|...++++.+..|.+..++..++.+|..
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 317 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence 88999999999999999999999998 4445 578899999999999999999999999999999999999999999999
Q ss_pred ccChhHHHHHHHHHHhC
Q 038542 328 LLRWEKKTKIREVMDKR 344 (475)
Q Consensus 328 ~g~~~~a~~~~~~m~~~ 344 (475)
.|++++|.+.++++.+.
T Consensus 318 ~g~~~~A~~~~~~al~~ 334 (388)
T 1w3b_A 318 QGNIEEAVRLYRKALEV 334 (388)
T ss_dssp TTCHHHHHHHHHHHTTS
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 99999999999998764
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=6.7e-23 Score=201.38 Aligned_cols=308 Identities=11% Similarity=0.014 Sum_probs=264.7
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHH
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIG 85 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~ 85 (475)
+...+..+...+.+.|+++.|..+++.+.+.. +.+..++..+...|.+.| ++++|...|+++.+ .+..+|..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMG-KSKAALPDLTKVIQLKMDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 45678888899999999999999999999874 667889999999999999 99999999998864 36889999999
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCCccH
Q 038542 86 GYARLGLSTDAIDLFRQMQISGVCPDE----ITMVTV------------LSACTDLGALEVGKWVESFIEKQMVNRSVGL 149 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 149 (475)
+|.+.|++++|++.|+++... .|+. ..+..+ ...+...|++++|...++.+.+.. +.+..+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 179 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAEL 179 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHH
Confidence 999999999999999999875 4543 454444 344888999999999999999874 447788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH-------
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL------- 219 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l------- 219 (475)
+..+..+|.+.|++++|...|+++. ..+..+|..+...|...|++++|+..|+++.... +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~ 258 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN 258 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence 9999999999999999999999875 3478999999999999999999999999998753 3334444444
Q ss_pred -----HHHHhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 038542 220 -----LSACSHCGLVDKGREYFDSMKNDFGIIPK-----IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTL 287 (475)
Q Consensus 220 -----l~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~l 287 (475)
..+|.+.|++++|..+|+.+.+. .|+ ..+|..+..++.+.|++++|...++++ ...| +..+|..+
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l 335 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDR 335 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 78899999999999999999874 343 457899999999999999999999987 4445 68999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 288 ISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
..+|...|++++|...++++++..|.++..+..+..+.
T Consensus 336 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 373 (450)
T 2y4t_A 336 AEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ 373 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence 99999999999999999999999999988888887543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.7e-22 Score=194.71 Aligned_cols=309 Identities=9% Similarity=-0.019 Sum_probs=256.5
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 29 GKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
+...+..+.... +.+...+..+...|.+.| ++++|..+|+++.+ .+..+|..+..+|...|++++|+..|+++.+
T Consensus 11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQS-MADVEKHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccccc-HHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 334444444443 567788999999999999 99999999998753 4788999999999999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc---cHHHHH------------HHHHHhcCCHHHHHHHH
Q 038542 106 SGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV---GLCNAL------------IDMFAKCGDVDKALKLF 170 (475)
Q Consensus 106 ~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~y~~~g~~~~A~~~~ 170 (475)
.+ +.+..++..+...+...|++++|...++.+.+... .+. ..+..+ ...|.+.|++++|...|
T Consensus 89 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 166 (450)
T 2y4t_A 89 LK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFL 166 (450)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred cC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 64 34677888999999999999999999999988642 233 455555 44599999999999999
Q ss_pred HhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC
Q 038542 171 RSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247 (475)
Q Consensus 171 ~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p 247 (475)
+++. ..+...|..+...|.+.|++++|+..|+++.+.. +.+..++..+..+|...|++++|...|+.+... .+.
T Consensus 167 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~ 243 (450)
T 2y4t_A 167 DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQD 243 (450)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT
T ss_pred HHHHHhCCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC
Confidence 9875 3477899999999999999999999999998863 567889999999999999999999999999863 223
Q ss_pred ChhHHHHH------------HHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 248 KIEHYGCM------------VDMLCRSGRVKEAHEFIQKM-PIEAN-----PIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 248 ~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
+...+..+ ...+.+.|++++|...|+++ ...|+ ...|..+...+...|++++|...++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 244 HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34444444 78899999999999999998 34454 45788899999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 310 NEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 310 ~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..|.++.++..++.+|...|++++|.+.++++.+.
T Consensus 324 ~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 358 (450)
T 2y4t_A 324 MEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH 358 (450)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999874
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-21 Score=194.55 Aligned_cols=330 Identities=9% Similarity=-0.066 Sum_probs=255.6
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCC-----------
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERD----------- 76 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~----------- 76 (475)
||..+|..+..++...|+++.|.+.++.+++.. +.+..++..+...|.+.| ++++|...|+++.+.+
T Consensus 37 p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~ 114 (514)
T 2gw1_A 37 EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLG-KFADAMFDLSVLSLNGDFNDASIEPML 114 (514)
T ss_dssp CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHSSSCCGGGTHHHH
T ss_pred ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhcCCCccchHHHHH
Confidence 677777777777778888888888888777764 455667777777787777 8888877776652110
Q ss_pred -----------------------------------------------------------------------hhHHHHHHH
Q 038542 77 -----------------------------------------------------------------------SVSWSAMIG 85 (475)
Q Consensus 77 -----------------------------------------------------------------------~~~~~~li~ 85 (475)
...|..+..
T Consensus 115 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (514)
T 2gw1_A 115 ERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194 (514)
T ss_dssp HHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHH
Confidence 222333333
Q ss_pred HHHH---cCChhHHHHHHHHHHH-----CCCCC--------CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccH
Q 038542 86 GYAR---LGLSTDAIDLFRQMQI-----SGVCP--------DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGL 149 (475)
Q Consensus 86 ~~~~---~g~~~~A~~~~~~m~~-----~g~~p--------~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 149 (475)
.+.. .|++++|+.+|+++.. ..-.| +..++..+...+...|++++|...+..+.+.... ..+
T Consensus 195 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~ 272 (514)
T 2gw1_A 195 SNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNS 272 (514)
T ss_dssp HHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHH
T ss_pred HHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHH
Confidence 3333 6778888888877776 21111 2345666777788888888888888888877543 777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 226 (475)
+..+...|...|++++|...|+++.. .+...|..+...|...|++++|+..|++..+.. +.+..++..+...+...
T Consensus 273 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 351 (514)
T 2gw1_A 273 YIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRE 351 (514)
T ss_dssp HHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHc
Confidence 78888888888888888888887653 356788889999999999999999999998864 34567888888999999
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHh---cC
Q 038542 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEAN----PIIWRTLISACCA---RG 295 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~---~g 295 (475)
|++++|..+++.+.+. .+.+...+..+...|.+.|++++|...++++ +..++ ..+|..+...+.. .|
T Consensus 352 ~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 352 NKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred CCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999998873 3345678888999999999999999999887 22222 4488889999999 99
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
++++|...++++.+..|.++.++..++.+|...|++++|.+.+++..+.
T Consensus 430 ~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 478 (514)
T 2gw1_A 430 NFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADL 478 (514)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 9999999999999999999899999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-20 Score=186.29 Aligned_cols=329 Identities=10% Similarity=-0.032 Sum_probs=275.7
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGY 87 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~ 87 (475)
..+......+.+.|++++|...|+.+++.. |+..++..+...|.+.| ++++|...|+++.+ .+..+|..+..+|
T Consensus 7 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 7 LALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVG-DLKKVVEMSTKALELKPDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHh-hHHHHHHHHHHHhccChHHHHHHHHHHHHH
Confidence 356667788899999999999999999985 78999999999999999 99999999998753 3678999999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCC----------------------------------------------------------
Q 038542 88 ARLGLSTDAIDLFRQMQISGVC---------------------------------------------------------- 109 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~g~~---------------------------------------------------------- 109 (475)
.+.|++++|+..|+++...+..
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 9999999999999999775421
Q ss_pred -------------------CC-HHHHHHHHHHHh---ccCChHHHHHHHHHHHH-----cCC--------CCCccHHHHH
Q 038542 110 -------------------PD-EITMVTVLSACT---DLGALEVGKWVESFIEK-----QMV--------NRSVGLCNAL 153 (475)
Q Consensus 110 -------------------p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l 153 (475)
|+ ...+......+. +.|++++|...+..+.+ ..- +.+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 11 222222222233 38999999999999988 311 2235678888
Q ss_pred HHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 231 (475)
...|...|++++|...|+++. .++...|..+...|...|++++|+..++++.... +.+...+..+...+...|++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 999999999999999999874 2347888999999999999999999999998864 4467788899999999999999
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
|...++.+.+ -.+.+...+..+...|.+.|++++|...++++ ...| +..+|..+...+...|++++|...++++.+
T Consensus 323 A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~ 400 (514)
T 2gw1_A 323 AGKDFDKAKE--LDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE 400 (514)
T ss_dssp HHHHHHHHHH--TCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9999999987 33446778999999999999999999999987 2233 567899999999999999999999999998
Q ss_pred CCCCCCc------hHHHHHHHHHh---ccChhHHHHHHHHHHhCC
Q 038542 310 NEPMHES------NYVLLSHIYAK---LLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 310 ~~p~~~~------~~~~l~~~~~~---~g~~~~a~~~~~~m~~~~ 345 (475)
..|.++. .+..++.+|.. .|++++|...++...+..
T Consensus 401 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~ 445 (514)
T 2gw1_A 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD 445 (514)
T ss_dssp HHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC
T ss_pred hhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC
Confidence 8877755 89999999999 999999999999987743
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-19 Score=168.90 Aligned_cols=312 Identities=11% Similarity=-0.013 Sum_probs=252.8
Q ss_pred cchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHH
Q 038542 10 KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGG 86 (475)
Q Consensus 10 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~ 86 (475)
...+..+...+...|++++|...++.+++.. +.+..++..+...|...| ++++|...|++..+ .+...|..+...
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMG-KSKAALPDLTKVIALKMDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 4567777888999999999999999999875 566788999999999999 99999999998753 367899999999
Q ss_pred HHHcCChhHHHHHHHHHHHCCCCC----CHHHHHHH------------HHHHhccCChHHHHHHHHHHHHcCCCCCccHH
Q 038542 87 YARLGLSTDAIDLFRQMQISGVCP----DEITMVTV------------LSACTDLGALEVGKWVESFIEKQMVNRSVGLC 150 (475)
Q Consensus 87 ~~~~g~~~~A~~~~~~m~~~g~~p----~~~t~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 150 (475)
|...|++++|+..|+++... .| +...+..+ ...+...|++++|...+..+.+.. +.+..++
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 157 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELR 157 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence 99999999999999999875 45 33344433 467888999999999999998874 3467788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHH----------
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFV---------- 217 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---------- 217 (475)
..+...|...|++++|...|++..+ .+..+|..+...|...|++++|...|++..+.. +.+...+.
T Consensus 158 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 158 ELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHH
Confidence 8899999999999999999988753 367889999999999999999999999998753 23333332
Q ss_pred --HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh----hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 038542 218 --GLLSACSHCGLVDKGREYFDSMKNDFGIIPKI----EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLIS 289 (475)
Q Consensus 218 --~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~ 289 (475)
.+...+...|++++|...++.+.+. . +.+. ..+..+...+...|++++|.+.+++. ...| +..+|..+..
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 314 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAE 314 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 2356688899999999999988874 2 1222 23556778889999999999999887 3344 6888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc
Q 038542 290 ACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 290 ~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 329 (475)
.+...|++++|...++++.+..|.+...+..+..++...+
T Consensus 315 ~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~ 354 (359)
T 3ieg_A 315 AYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLK 354 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887777777665443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-19 Score=179.86 Aligned_cols=325 Identities=10% Similarity=-0.009 Sum_probs=240.6
Q ss_pred hHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHH
Q 038542 12 TYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYA 88 (475)
Q Consensus 12 t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~ 88 (475)
.|..+...+.+.|++++|...++.+++.. +.+...+..+...|.+.| ++++|.+.|++..+ .+..+|..+..+|.
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~ 104 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTG-DLEKVIEFTTKALEIKPDHSKALLRRASANE 104 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 44555566666777777777777776654 455666666677777766 77777777766542 25566666667777
Q ss_pred HcCChhHHHHHHH-------------------------------------------------------------------
Q 038542 89 RLGLSTDAIDLFR------------------------------------------------------------------- 101 (475)
Q Consensus 89 ~~g~~~~A~~~~~------------------------------------------------------------------- 101 (475)
..|++++|+..|+
T Consensus 105 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (537)
T 3fp2_A 105 SLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVN 184 (537)
T ss_dssp HHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSC
T ss_pred HcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHh
Confidence 7776666666553
Q ss_pred ------------------------------------------HHHHCCCCCC--------HHHHHHHHHHHhccCChHHH
Q 038542 102 ------------------------------------------QMQISGVCPD--------EITMVTVLSACTDLGALEVG 131 (475)
Q Consensus 102 ------------------------------------------~m~~~g~~p~--------~~t~~~ll~~~~~~~~~~~a 131 (475)
++.+. .|+ ..++..+...+...|++++|
T Consensus 185 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A 262 (537)
T 3fp2_A 185 TSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKNNLLDA 262 (537)
T ss_dssp CCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred hccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcccHHHH
Confidence 33221 222 11344445566777888888
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
...+..+.+.. |+..++..+...|...|++++|...|++.. ..+..+|..+...|...|++++|+..|++..+..
T Consensus 263 ~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 340 (537)
T 3fp2_A 263 QVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN 340 (537)
T ss_dssp HHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence 88888888764 446778888888888999999999888764 3467788888999999999999999999988864
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----C----CCCC
Q 038542 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----P----IEAN 280 (475)
Q Consensus 209 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~----~~p~ 280 (475)
+.+...+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...|+++ + ....
T Consensus 341 -~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 417 (537)
T 3fp2_A 341 -PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVG 417 (537)
T ss_dssp -TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSST
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHH
Confidence 334677888888999999999999999988873 3445678888899999999999999999886 1 1112
Q ss_pred HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 281 PIIWRTLISACCAR----------GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 281 ~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
...+..+...+... |++++|...++++.+..|.+...+..++.+|...|++++|.+.+++..+..
T Consensus 418 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 418 IGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp THHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 33345556677777 999999999999999999999999999999999999999999999887643
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=8.6e-19 Score=166.08 Aligned_cols=296 Identities=10% Similarity=-0.003 Sum_probs=248.2
Q ss_pred ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 038542 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLS 120 (475)
Q Consensus 44 ~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~ 120 (475)
+...+..+...+.+.| ++++|...|++..+ .+..+|..+...+...|++++|+..|+++.... +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAG-QLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 3456777888899998 99999999998753 368899999999999999999999999998753 336678888999
Q ss_pred HHhccCChHHHHHHHHHHHHcCCC--CCccHHHHH------------HHHHHhcCCHHHHHHHHHhcC---CCChhHHHH
Q 038542 121 ACTDLGALEVGKWVESFIEKQMVN--RSVGLCNAL------------IDMFAKCGDVDKALKLFRSMN---GRTIVSWTS 183 (475)
Q Consensus 121 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l------------i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~ 183 (475)
.+...|++++|...+..+.+.... .+...+..+ ...|...|++++|...|+++. ..+...|..
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 159 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELREL 159 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHH
Confidence 999999999999999999886420 244455444 588999999999999999875 346788999
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH----------
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG---------- 253 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~---------- 253 (475)
+...+...|++++|+..++++.+.. +.+..++..+...+...|++++|...++...+. .+.+...+.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~ 236 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKKLNK 236 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHHH
Confidence 9999999999999999999999864 557788999999999999999999999999874 222333332
Q ss_pred --HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 254 --CMVDMLCRSGRVKEAHEFIQKM-PIEAN-P----IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 254 --~li~~~~~~g~~~~A~~~~~~m-~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
.+...+.+.|++++|...++++ ...|+ . ..|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (359)
T 3ieg_A 237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY 316 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 2366789999999999999987 33343 3 23556778999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHhC
Q 038542 326 AKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~ 344 (475)
...|++++|.+.++...+.
T Consensus 317 ~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 317 LIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCHHHHHHHHHHHHhc
Confidence 9999999999999998864
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.5e-18 Score=162.48 Aligned_cols=286 Identities=11% Similarity=0.035 Sum_probs=220.4
Q ss_pred CCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 038542 42 GDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTV 118 (475)
Q Consensus 42 ~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 118 (475)
+.+..++..+...+...| ++++|.++|+++.+ .+...+..++..+...|++++|+.+++++.... +.+...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g-~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNC-DFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 556666777777777777 88888888887653 255667777788888888888888888887753 3356677777
Q ss_pred HHHHhccC-ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCh
Q 038542 119 LSACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRG 194 (475)
Q Consensus 119 l~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 194 (475)
...+...| ++++|...+..+.+.. +.+...+..+..+|...|++++|...|++.. ..+...|..+...|...|++
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 77788888 8888888888887764 3356678888888888888888888888764 23456777788888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC-------CCCChhHHHHHHHHHHHcCCHHH
Q 038542 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFG-------IIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 195 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~-------~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
++|...|++..+.. +.+...+..+...+...|++++|...++...+... .+.....+..+..+|.+.|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 88888888888763 45567788888888888999999888888776321 13345788888999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH-HhccCh
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY-AKLLRW 331 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~ 331 (475)
|...+++. ...| +...|..+...+...|++++|.+.++++.+..|.++..+..+..++ ...|+.
T Consensus 255 A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 255 ALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 99998887 2233 6778888999999999999999999999999999888888888887 444543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.7e-17 Score=155.26 Aligned_cols=288 Identities=10% Similarity=-0.012 Sum_probs=242.2
Q ss_pred CCCCCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHH
Q 038542 5 GVSPNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWS 81 (475)
Q Consensus 5 g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~ 81 (475)
+.+.|...+..+...+...|+++.|..+++.+.+.. +.+...+..++..+.+.| ++++|..+|+++.+ .+...|.
T Consensus 17 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~ 94 (330)
T 3hym_B 17 GLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELN-KANELFYLSHKLVDLYPSNPVSWF 94 (330)
T ss_dssp ---CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTSTHHHH
T ss_pred hchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhh-hHHHHHHHHHHHHHhCcCCHHHHH
Confidence 456677788888999999999999999999999875 556667777888888888 99999999998754 3678999
Q ss_pred HHHHHHHHcC-ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhc
Q 038542 82 AMIGGYARLG-LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKC 160 (475)
Q Consensus 82 ~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~ 160 (475)
.+...+...| ++++|++.|++..... +.+...+..+...+...|++++|...+..+.+... .+...+..+...|...
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~ 172 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLT 172 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHH
Confidence 9999999999 9999999999998763 33577888999999999999999999999998753 3567788899999999
Q ss_pred CCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHhcCCCH
Q 038542 161 GDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG--------VPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 161 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~ll~~~~~~g~~ 229 (475)
|++++|...|++..+ .+...|..+...|...|++++|...|++..+.. .+.+..++..+..++...|++
T Consensus 173 ~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 173 NNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp TCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 999999999998753 367889999999999999999999999987742 133457888999999999999
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCCHH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISAC-CARGELK 298 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~-~~~g~~~ 298 (475)
++|...++...+. .+.+...+..+...|.+.|++++|.+.+++. ...| +...+..+..++ ...|+.+
T Consensus 253 ~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 253 AEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 9999999999873 3446788999999999999999999999998 5566 677888887777 4556543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-18 Score=162.97 Aligned_cols=277 Identities=12% Similarity=-0.024 Sum_probs=226.0
Q ss_pred CCCCHHHHHH-HHhccCC--C-----ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 038542 58 CEGGIELGRK-VFDEMSE--R-----DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129 (475)
Q Consensus 58 ~gg~~~~A~~-~f~~~~~--~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 129 (475)
.| +++.|.. .|++..+ | +...|..+...+.+.|++++|+..|+++.+.. +.+..++..+...+...|+++
T Consensus 38 ~~-~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 115 (368)
T 1fch_A 38 LS-DYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQEL 115 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HH-HHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHH
Confidence 35 8889988 8876543 1 35678899999999999999999999999864 446778888999999999999
Q ss_pred HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHH---------------HHHHHHHc
Q 038542 130 VGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTS---------------VIAGLAMH 191 (475)
Q Consensus 130 ~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~~~ 191 (475)
+|...+..+.+.. +.+..++..+...|...|++++|...|+++... +...+.. .+..+...
T Consensus 116 ~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (368)
T 1fch_A 116 LAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSD 194 (368)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHH
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhhc
Confidence 9999999999875 447788999999999999999999999987532 2222221 23344489
Q ss_pred CChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
|++++|+..|+++.+..... +..++..+...+...|++++|...++.+.+. .+.+...+..+...+.+.|++++|..
T Consensus 195 ~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~ 272 (368)
T 1fch_A 195 SLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVA 272 (368)
T ss_dssp HHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999998864221 5788999999999999999999999999873 34467889999999999999999999
Q ss_pred HHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-----------CchHHHHHHHHHhccChhHHHHH
Q 038542 271 FIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH-----------ESNYVLLSHIYAKLLRWEKKTKI 337 (475)
Q Consensus 271 ~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~~~a~~~ 337 (475)
.|+++ ...| +..+|..+...+...|++++|...++++.+..|.+ ..+|..++.+|...|++++|..+
T Consensus 273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 352 (368)
T 1fch_A 273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 352 (368)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHh
Confidence 99987 3334 68899999999999999999999999999887766 67899999999999999999988
Q ss_pred HH
Q 038542 338 RE 339 (475)
Q Consensus 338 ~~ 339 (475)
++
T Consensus 353 ~~ 354 (368)
T 1fch_A 353 DA 354 (368)
T ss_dssp HT
T ss_pred HH
Confidence 75
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-18 Score=162.38 Aligned_cols=261 Identities=10% Similarity=-0.074 Sum_probs=216.5
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
+...|..+...+.+.|++++|++.|+++.... +.+..++..+...+...|++++|...+..+.+.. +.+..++..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 56679999999999999999999999998863 4467889999999999999999999999999875 346788999999
Q ss_pred HHHhcCCHHHHHHHHHhcCCCC-------------hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNGRT-------------IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLS 221 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~ 221 (475)
+|.+.|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++..++..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999999875321 123344578899999999999999999986422 16889999999
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 299 (475)
.+...|++++|...|+.+.+. .+.+...|..+..+|.+.|++++|...|+++ ...| +..+|..+...|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 3456789999999999999999999999988 4445 58899999999999999999
Q ss_pred HHHHHHHHHhCCCC------------CCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 300 AESITKRLIGNEPM------------HESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 300 a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
|...++++++..|. +...|..|..++...|+.+.+.++.+.
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999987655 356789999999999999998877643
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=168.60 Aligned_cols=250 Identities=15% Similarity=0.135 Sum_probs=111.3
Q ss_pred hCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 038542 57 SCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136 (475)
Q Consensus 57 ~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 136 (475)
++| ++++|.++++++..| .+|..|+.++.+.|++++|++.|.+ .+|..+|..++.++...|++++|..+++
T Consensus 15 ~~~-~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIG-NLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred Hcc-CHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 556 899999999998655 4899999999999999999999965 2577788889999999999999999888
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHH
Q 038542 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAF 216 (475)
Q Consensus 137 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 216 (475)
..++. .+++.+.+.|+.+|.++|+++++.++++. |+..+|+.+...|...|++++|..+|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 77764 34577888899999999999998888763 67779999999999999999999999876 368
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGE 296 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~ 296 (475)
..++.++.+.|++++|.+.+..+ .++.+|..++.+|...|+++.|......+...|+ -...++..|.+.|.
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad--~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHAD--ELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHH--HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHh--hHHHHHHHHHHCCC
Confidence 88999999999999999988876 2678899999999999999999776666554443 34468888999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc--cChhHHHHHH
Q 038542 297 LKLAESITKRLIGNEPMHESNYVLLSHIYAKL--LRWEKKTKIR 338 (475)
Q Consensus 297 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~~~~a~~~~ 338 (475)
+++|..+++..++.++.....|.-|..+|++- ++..+..+.|
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 99999999999998888888888888888765 3444444443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-17 Score=163.87 Aligned_cols=294 Identities=13% Similarity=0.081 Sum_probs=239.5
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 038542 45 IHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSA 121 (475)
Q Consensus 45 ~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~ 121 (475)
...+..+...|.+.| ++++|.+.|++..+ .++.+|..+..+|.+.|++++|++.|+++.... +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAK-NFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTT-CCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456777888899998 99999999998853 478899999999999999999999999998864 3467788889999
Q ss_pred HhccCChHHHHHHHHHHHHcCCCCCcc-----------------------------------------------------
Q 038542 122 CTDLGALEVGKWVESFIEKQMVNRSVG----------------------------------------------------- 148 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------------------------------------- 148 (475)
+...|++++|...+..+ .....+...
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH-hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 99999999999988633 211110000
Q ss_pred --------------HHHHHHHHHHh--------cCCHHHHHHHHHhcCCC---C-------hhHHHHHHHHHHHcCChHH
Q 038542 149 --------------LCNALIDMFAK--------CGDVDKALKLFRSMNGR---T-------IVSWTSVIAGLAMHGRGLE 196 (475)
Q Consensus 149 --------------~~~~li~~y~~--------~g~~~~A~~~~~~~~~~---~-------~~~~~~li~~~~~~g~~~~ 196 (475)
....+...|.. .|++++|..+|+++.+. + ..+|..+...+...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 22222222222 24788999999887643 2 2356777788899999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038542 197 AVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM- 275 (475)
Q Consensus 197 A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 275 (475)
|...|++..+. .|+..++..+...+...|++++|...++.+.+. .+.+...+..+...|...|++++|...++++
T Consensus 262 A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 337 (537)
T 3fp2_A 262 AQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQ 337 (537)
T ss_dssp HHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 99999999985 566888999999999999999999999999873 3456788999999999999999999999988
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 276 PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 276 ~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|...|++++|.+.++.+.+..
T Consensus 338 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 338 SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 3334 567899999999999999999999999999999999999999999999999999999999987644
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-16 Score=144.80 Aligned_cols=267 Identities=11% Similarity=0.020 Sum_probs=214.9
Q ss_pred hCCCCHHHHHHHHhccCCCC----hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 038542 57 SCEGGIELGRKVFDEMSERD----SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGK 132 (475)
Q Consensus 57 ~~gg~~~~A~~~f~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~ 132 (475)
..| +++.|...++.....+ ......+.++|...|++++|+..++. . -+|+..++..+...+...++.+.|.
T Consensus 11 ~~g-~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~~A~ 85 (291)
T 3mkr_A 11 YIG-SYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRDAIV 85 (291)
T ss_dssp HTT-CHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred HHH-HHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHHHHH
Confidence 446 9999999988876543 23556678999999999999987654 2 3567778888888899999999999
Q ss_pred HHHHHHHHcCCCC-CccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 133 WVESFIEKQMVNR-SVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 133 ~~~~~~~~~~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
+.++.+...+..| +..++..+..+|.+.|++++|.+.|++ ..+...+..++..|.+.|++++|.+.|+++.+.. |
T Consensus 86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 9999998876444 566777788999999999999999999 5678899999999999999999999999999864 5
Q ss_pred CHHHH---HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 038542 212 DDVAF---VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRT 286 (475)
Q Consensus 212 ~~~t~---~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 286 (475)
+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++. ...| +..+|..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~ 239 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLIN 239 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 54321 22334455679999999999999984 5568889999999999999999999999997 4445 7888999
Q ss_pred HHHHHHhcCCHHH-HHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHH
Q 038542 287 LISACCARGELKL-AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 287 li~~~~~~g~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
++..+...|+.++ +.++++++.+.+|.++.+ .+...+.+.++++..-|
T Consensus 240 l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~----~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 240 LVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI----KEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH----HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHHHHHc
Confidence 9999999999876 678999999999988643 34556666666665443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-19 Score=166.99 Aligned_cols=282 Identities=10% Similarity=0.052 Sum_probs=138.8
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 101 (475)
+.|+++.|.++++.+ ++..+|..|..++.+.| ++++|.+.|.+. +|..+|..++.++.+.|++++|+..++
T Consensus 15 ~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g-~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~ 85 (449)
T 1b89_A 15 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG-MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 85 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhC------CChHHHHHHHHHHHHcC-CHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 567899999999888 22359999999999999 999999999764 577799999999999999999999877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 038542 102 QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181 (475)
Q Consensus 102 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 181 (475)
..++. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+++.|...|++++|...|..+ ..|
T Consensus 86 ~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~ 151 (449)
T 1b89_A 86 MARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCH
T ss_pred HHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhH
Confidence 77664 5567888999999999999999988874 367789999999999999999999999988 489
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
..++.++.+.|++++|++.++++ .+..||..++.+|...|+++.|...... +...+.....++..|.+
T Consensus 152 ~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 152 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQD 219 (449)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHH
Confidence 99999999999999999999988 3789999999999999999999654443 23355556679999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC-----CCCchHHHHHHHHHhccChh
Q 038542 262 SGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR--GELKLAESITKRLIGNEP-----MHESNYVLLSHIYAKLLRWE 332 (475)
Q Consensus 262 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~ 332 (475)
.|++++|..+++.. +..+ ....|+-|..++++. ++..+..+.|..-....| .+...|.-+...|...++|+
T Consensus 220 ~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d 299 (449)
T 1b89_A 220 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 299 (449)
T ss_dssp TTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHH
T ss_pred CCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 99999999999887 5554 677888887777765 455555555554333334 56778999999999999999
Q ss_pred HHHHHH
Q 038542 333 KKTKIR 338 (475)
Q Consensus 333 ~a~~~~ 338 (475)
.|..+.
T Consensus 300 ~A~~tm 305 (449)
T 1b89_A 300 NAIITM 305 (449)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 987643
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=3.9e-17 Score=152.64 Aligned_cols=258 Identities=11% Similarity=-0.031 Sum_probs=189.3
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 157 (475)
..|..+...+...|++++|+.+|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345556666666666666666666665542 2244555556666666666666666666666553 23455666666666
Q ss_pred HhcCCHHHHHHHHHhcCCC---ChhHHHHH--------------HH-HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHH
Q 038542 158 AKCGDVDKALKLFRSMNGR---TIVSWTSV--------------IA-GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGL 219 (475)
Q Consensus 158 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 219 (475)
...|++++|...|+++... +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 6666666666666655321 12222222 22 3667788999999999998864 4467888899
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGEL 297 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 297 (475)
...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|...++++ ...| +..+|..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999998873 3446788999999999999999999999987 3334 688899999999999999
Q ss_pred HHHHHHHHHHHhCCCC------------CCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 298 KLAESITKRLIGNEPM------------HESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
++|.+.++++.+..|. +...+..+..+|...|++++|..+++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999998887 677899999999999999999988854
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.3e-16 Score=152.04 Aligned_cols=254 Identities=12% Similarity=-0.017 Sum_probs=134.9
Q ss_pred HHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 038542 48 QNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD 124 (475)
Q Consensus 48 ~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~ 124 (475)
+..+...|.+.| ++++|...|+++.+ .+..+|..+...|.+.|++++|+..|+++.... +.+..++..+...+..
T Consensus 68 ~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 145 (365)
T 4eqf_A 68 AFEEGLKRLKEG-DLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTN 145 (365)
T ss_dssp HHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHc
Confidence 444444555554 55555555554432 244455555555555555555555555555432 2234455555555555
Q ss_pred cCChHHHHHHHHHHHHcCCCC---------CccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNR---------SVGLCNALIDMFAKCGDVDKALKLFRSMNG--R---TIVSWTSVIAGLAM 190 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~---------~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~ 190 (475)
.|++++|...+..+.+..... ...++..+...|.+.|++++|...|+++.+ | +..+|..+...|..
T Consensus 146 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 225 (365)
T 4eqf_A 146 TSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHL 225 (365)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHH
Confidence 555555555555555432110 112223345566666666666666665531 1 45566666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
.|++++|+..|++..+.. +.+..++..+..+|...|++++|...|+.+.+. .+.+...+..+..+|.+.|++++|..
T Consensus 226 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~ 302 (365)
T 4eqf_A 226 SGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGAYREAVS 302 (365)
T ss_dssp HTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHH
Confidence 666666666666666542 334556666666666666666666666666552 22335566666666666666666666
Q ss_pred HHHhC-CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 038542 271 FIQKM-PIEA-------------NPIIWRTLISACCARGELKLAESITKR 306 (475)
Q Consensus 271 ~~~~m-~~~p-------------~~~~~~~li~~~~~~g~~~~a~~~~~~ 306 (475)
.|+++ ...| +..+|..+..++...|+.+.+..+.++
T Consensus 303 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 303 NFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 66665 0000 245677777777777777777666554
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-16 Score=150.29 Aligned_cols=283 Identities=13% Similarity=0.005 Sum_probs=213.2
Q ss_pred HHHcCCCcHHHHH-HHHHHHHhcC-CC--ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHHHHHHcC
Q 038542 19 ACAGIGDLNLGKS-VHGAVLKFQF-GD--DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIGGYARLG 91 (475)
Q Consensus 19 ~~~~~~~~~~a~~-~~~~~~~~g~-~~--~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g 91 (475)
++.-.|+++.|.. .+....+..- .| +...+..+...|.+.| ++++|...|+++.+ .+..+|..+..+|...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEG-DLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTT-CHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCc
Confidence 3445578888888 8877665421 11 3456777888888888 99999999988753 36778888999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHH----------------HHHH
Q 038542 92 LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCN----------------ALID 155 (475)
Q Consensus 92 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----------------~li~ 155 (475)
++++|++.|+++.... +.+..++..+...+...|++++|...+..+.+.... +...+. .+..
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGS 190 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHH
Confidence 9999999999888753 346778888888889999999999999988876533 222221 2333
Q ss_pred HHHhcCCHHHHHHHHHhcCC--C---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH
Q 038542 156 MFAKCGDVDKALKLFRSMNG--R---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~--~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 230 (475)
.+ ..|++++|...|+++.+ | +..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|+++
T Consensus 191 ~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~ 268 (368)
T 1fch_A 191 LL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSE 268 (368)
T ss_dssp HH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred Hh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHH
Confidence 34 88999999999988752 2 46788899999999999999999999988863 446788899999999999999
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC------------CHHHHHHHHHHHHhcCCH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA------------NPIIWRTLISACCARGEL 297 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p------------~~~~~~~li~~~~~~g~~ 297 (475)
+|...|+.+.+. .+.+...+..+..+|.+.|++++|...|+++ ...| ...+|..+..++...|+.
T Consensus 269 ~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 269 EAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999998863 3446788899999999999999999999887 1111 268899999999999999
Q ss_pred HHHHHHHHHHH
Q 038542 298 KLAESITKRLI 308 (475)
Q Consensus 298 ~~a~~~~~~~~ 308 (475)
++|..++++.+
T Consensus 347 ~~A~~~~~~~l 357 (368)
T 1fch_A 347 DAYGAADARDL 357 (368)
T ss_dssp GGHHHHHTTCH
T ss_pred HhHHHhHHHHH
Confidence 99998877543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-18 Score=174.90 Aligned_cols=128 Identities=16% Similarity=0.146 Sum_probs=113.7
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcC-------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMN-------GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVG 218 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 218 (475)
-..+||+||++|+++|++++|.++|++|. .||++|||+||.+|++.|+.++|.++|++|.+.|+.||.+||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 45689999999999999999999997763 57999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCH-HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038542 219 LLSACSHCGLV-DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274 (475)
Q Consensus 219 ll~~~~~~g~~-~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (475)
||.++++.|+. ++|.++|++|.+. |+.||..+|++++....+.+-++.+.++...
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~ 261 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCcc
Confidence 99999999984 7899999999997 9999999999999888887655555444333
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.5e-16 Score=144.92 Aligned_cols=246 Identities=10% Similarity=0.041 Sum_probs=202.4
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDE--ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG 161 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g 161 (475)
+.-....|++++|+..+++.... .|+. .....+..++...|+++.|...++. .-+|+..++..+...|...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45567789999999999877543 4543 3556678899999999999876543 24567778888999999999
Q ss_pred CHHHHHHHHHhcC----CC-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 162 DVDKALKLFRSMN----GR-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 162 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
+.++|.+.++++. .| +...+..+...|.+.|++++|++.+++ +.+...+..+...+.+.|++++|...+
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999863 24 566777888999999999999999987 567888999999999999999999999
Q ss_pred HHhhhhcCCCCChhHH---HHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 237 DSMKNDFGIIPKIEHY---GCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 237 ~~m~~~~~~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
+.+.+. .|+.... ..++..+...|++++|..+|+++ ..+.+...|+.+..++...|++++|...++++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 3553211 23344555569999999999998 333478899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHhccChhH-HHHHHHHHHhC
Q 038542 312 PMHESNYVLLSHIYAKLLRWEK-KTKIREVMDKR 344 (475)
Q Consensus 312 p~~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~~ 344 (475)
|.++.++..++.++...|++++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 56888887754
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=9.1e-16 Score=143.30 Aligned_cols=258 Identities=12% Similarity=-0.013 Sum_probs=152.2
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC---CChhHHHHHHH
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE---RDSVSWSAMIG 85 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---~~~~~~~~li~ 85 (475)
+...+......+...|++++|..+++.+.+.. +.+...+..+...|.+.| ++++|.+.|++..+ .+..+|..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENE-KDGLAIIALNHARMLDPKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcCcCCHHHHHHHHH
Confidence 33455666777788888888888888887764 456677777888888887 88888888877643 36677888888
Q ss_pred HHHHcCChhHHHHHHHHHHHCCCCCCH-HHHHHH--------------HH-HHhccCChHHHHHHHHHHHHcCCCCCccH
Q 038542 86 GYARLGLSTDAIDLFRQMQISGVCPDE-ITMVTV--------------LS-ACTDLGALEVGKWVESFIEKQMVNRSVGL 149 (475)
Q Consensus 86 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~l--------------l~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 149 (475)
.|...|++++|++.++++.... |+. ..+..+ .. .+...|++++|...+..+.+.. +.+..+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQ--PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHH
Confidence 8888888888888888887652 322 222222 11 2455566666666666665553 224455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 226 (475)
+..+...|.+.|++++|...|+++. ..+..+|..+...|...|++++|...|+++.+.. +.+..++..+...+...
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~ 253 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNM 253 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHh
Confidence 5555666666666666666655543 2234555555555555555555555555555432 23344555555555555
Q ss_pred CCHHHHHHHHHHhhhhcCCCC-----------ChhHHHHHHHHHHHcCCHHHHHHHHH
Q 038542 227 GLVDKGREYFDSMKNDFGIIP-----------KIEHYGCMVDMLCRSGRVKEAHEFIQ 273 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (475)
|++++|...++.+.+. ...+ +...+..+..++.+.|++++|..+++
T Consensus 254 g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 254 SQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5555555555555432 1110 23344444455555555555544444
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.3e-15 Score=147.43 Aligned_cols=340 Identities=9% Similarity=-0.084 Sum_probs=229.9
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHh-----c---CCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC-----
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKF-----Q---FGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE----- 74 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----g---~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~----- 74 (475)
.....|+.+...+...|+.++|.+.++..++. + .+....+|+.+...|...| ++++|...|++..+
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g-~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMG-RLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcC-ChHHHHHHHHHHHHHhHhc
Confidence 34557888889999999999999999988653 1 1234567899999999999 99999988876531
Q ss_pred ------CChhHHHHHHHHHHHc--CChhHHHHHHHHHHHCCCCCC-HHHHHHHHHH---HhccCChHHHHHHHHHHHHcC
Q 038542 75 ------RDSVSWSAMIGGYARL--GLSTDAIDLFRQMQISGVCPD-EITMVTVLSA---CTDLGALEVGKWVESFIEKQM 142 (475)
Q Consensus 75 ------~~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~---~~~~~~~~~a~~~~~~~~~~~ 142 (475)
....+++.+..++... +++++|++.|++..+. .|+ ...+..+..+ +...++.++|.+.+.+.++..
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 1355777777666654 4689999999999875 454 4444444444 345677788888998888764
Q ss_pred CCCCccHHHHHHHHHHh----cCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 038542 143 VNRSVGLCNALIDMFAK----CGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215 (475)
Q Consensus 143 ~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 215 (475)
+.+..++..+...+.. .|++++|.+.+++.. ..+...|..+...|...|++++|+..|++..+.. +-+..+
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 3355566666555554 467788999998754 3467889999999999999999999999998863 334566
Q ss_pred HHHHHHHHhcC-------------------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-
Q 038542 216 FVGLLSACSHC-------------------GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM- 275 (475)
Q Consensus 216 ~~~ll~~~~~~-------------------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m- 275 (475)
+..+..+|... +..+.|...++..... .+.+...+..+...|...|++++|.+.|++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL 361 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALADQYEEAEYYFQKEF 361 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhccHHHHHHHHHHHH
Confidence 66666555321 2356677777777652 2345667888999999999999999999987
Q ss_pred CCCCCHHH----HHHHHH-HHHhcCCHHHHHHHHHHHHhC------------------------CCCCCchHHHHHHHHH
Q 038542 276 PIEANPII----WRTLIS-ACCARGELKLAESITKRLIGN------------------------EPMHESNYVLLSHIYA 326 (475)
Q Consensus 276 ~~~p~~~~----~~~li~-~~~~~g~~~~a~~~~~~~~~~------------------------~p~~~~~~~~l~~~~~ 326 (475)
...|+... +..+.. .....|+.++|+..++++++. +|.++.+|..|+.+|.
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~ 441 (472)
T 4g1t_A 362 SKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQE 441 (472)
T ss_dssp HSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHH
T ss_pred hcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44444332 233332 234678999999888877654 4667789999999999
Q ss_pred hccChhHHHHHHHHHHhCCCccCCCccE
Q 038542 327 KLLRWEKKTKIREVMDKRGMKKIPGSTL 354 (475)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~~~~~~~~~s~ 354 (475)
..|++++|.+.+++..+.+-......+|
T Consensus 442 ~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 442 LNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp HHHHCC----------------------
T ss_pred HcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 9999999999999988766433333333
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=6e-14 Score=139.25 Aligned_cols=317 Identities=12% Similarity=0.030 Sum_probs=159.7
Q ss_pred cchHHHHHHHHHc----CCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHh----CCCCHHHHHHHHhccCCC-ChhHH
Q 038542 10 KFTYPFVLKACAG----IGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGS----CEGGIELGRKVFDEMSER-DSVSW 80 (475)
Q Consensus 10 ~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~gg~~~~A~~~f~~~~~~-~~~~~ 80 (475)
...+..+-..+.. .+++++|...+....+.| +...+..|...|.. .+ +.++|.+.|++..+. +...+
T Consensus 39 ~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~-~~~~A~~~~~~a~~~~~~~a~ 114 (490)
T 2xm6_A 39 AKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQ-DYAQAVIWYKKAALKGLPQAQ 114 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence 3344444444444 555555555555555542 33444445555554 44 555555555554332 44455
Q ss_pred HHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCccHHHH
Q 038542 81 SAMIGGYAR----LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD----LGALEVGKWVESFIEKQMVNRSVGLCNA 152 (475)
Q Consensus 81 ~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 152 (475)
..|...|.. .+++++|++.|++..+.| +...+..+...+.. .+++++|...+....+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 555555555 455555555555555443 33333344444433 445555555555544432 3334444
Q ss_pred HHHHHHh----cCCHHHHHH------------------------------------HHHhcCC-CChhHHHHHHHHHHH-
Q 038542 153 LIDMFAK----CGDVDKALK------------------------------------LFRSMNG-RTIVSWTSVIAGLAM- 190 (475)
Q Consensus 153 li~~y~~----~g~~~~A~~------------------------------------~~~~~~~-~~~~~~~~li~~~~~- 190 (475)
|..+|.. .++.++|.. .|++..+ .+..++..+...|..
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g 268 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQG 268 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Confidence 4444444 444444444 4444322 233344444444444
Q ss_pred ---cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC-----CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc
Q 038542 191 ---HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC-----GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262 (475)
Q Consensus 191 ---~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (475)
.++.++|+..|++..+.| +...+..+...|... ++.++|..+|+...+. + +...+..+..+|...
T Consensus 269 ~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 269 LAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRL 341 (490)
T ss_dssp TTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhC
Confidence 455555555555554433 233334444444444 5555555555555542 2 334445555555544
Q ss_pred C---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh----ccCh
Q 038542 263 G---RVKEAHEFIQKMPIEANPIIWRTLISACCA----RGELKLAESITKRLIGNEPMHESNYVLLSHIYAK----LLRW 331 (475)
Q Consensus 263 g---~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~ 331 (475)
| ++++|.+.|++.--..++..+..|...|.. .+++++|...+++..+.+ ++..+..|..+|.. .+++
T Consensus 342 g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~ 419 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDY 419 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCH
Confidence 4 455566666555112345556666666665 566666666666666554 24456666666665 5666
Q ss_pred hHHHHHHHHHHhCC
Q 038542 332 EKKTKIREVMDKRG 345 (475)
Q Consensus 332 ~~a~~~~~~m~~~~ 345 (475)
++|...+++..+.+
T Consensus 420 ~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 420 VQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCC
Confidence 66666666665544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-13 Score=137.43 Aligned_cols=298 Identities=10% Similarity=-0.005 Sum_probs=206.1
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHh----CCCCHHHHHHHHhccCC-CChhHHHHHHHHHHH----cCChhHHHHH
Q 038542 29 GKSVHGAVLKFQFGDDIHVQNTLVHMYGS----CEGGIELGRKVFDEMSE-RDSVSWSAMIGGYAR----LGLSTDAIDL 99 (475)
Q Consensus 29 a~~~~~~~~~~g~~~~~~~~~~li~~~~~----~gg~~~~A~~~f~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~ 99 (475)
+...+....+. .+...+..|...|.. .+ +++.|...|++..+ .++..+..|...|.. .+++++|++.
T Consensus 26 ~~~~~~~~a~~---g~~~a~~~lg~~y~~g~~~~~-~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 101 (490)
T 2xm6_A 26 NLEQLKQKAES---GEAKAQLELGYRYFQGNETTK-DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIW 101 (490)
T ss_dssp CHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHC---CCHHHHHHHHHHHHcCCCCCc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 34555555543 466777788888887 67 99999999998765 478899999999999 9999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHHHHHH
Q 038542 100 FRQMQISGVCPDEITMVTVLSACTD----LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK----CGDVDKALKLFR 171 (475)
Q Consensus 100 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~ 171 (475)
|++..+.| +...+..+...+.. .+++++|...++...+.| +...+..|..+|.. .+++++|...|+
T Consensus 102 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 175 (490)
T 2xm6_A 102 YKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYS 175 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998865 56667777777777 789999999999998876 56778889999988 889999999998
Q ss_pred hcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHhhhh
Q 038542 172 SMNG-RTIVSWTSVIAGLAM----HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH----CGLVDKGREYFDSMKND 242 (475)
Q Consensus 172 ~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~ 242 (475)
+..+ .+..++..+...|.. .++.++|+..|++..+.| +...+..+...|.. .++.++|..+|+...+.
T Consensus 176 ~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~ 252 (490)
T 2xm6_A 176 KAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ 252 (490)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT
T ss_pred HHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC
Confidence 7653 466777778888877 788888888888877654 34455555555553 55666666666655542
Q ss_pred cCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCC-------------------------------------CCCH
Q 038542 243 FGIIPKIEHYGCMVDMLCR----SGRVKEAHEFIQKMPI-------------------------------------EANP 281 (475)
Q Consensus 243 ~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~-------------------------------------~p~~ 281 (475)
+ +...+..+..+|.. .++.++|.++|++.-- ..+.
T Consensus 253 -~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~ 328 (490)
T 2xm6_A 253 -G---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDA 328 (490)
T ss_dssp -T---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCH
T ss_pred -C---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCH
Confidence 1 23334444444444 4445555554444311 1233
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCC
Q 038542 282 IIWRTLISACCARG---ELKLAESITKRLIGNEPMHESNYVLLSHIYAK----LLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 282 ~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 345 (475)
..+..|...+...| +.++|.+.+++..+.+ ++..+..|..+|.. .+++++|.+.+++..+.|
T Consensus 329 ~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 329 TAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 44444444444433 5556666666665553 34566677777776 677777777777776655
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-18 Score=170.50 Aligned_cols=147 Identities=10% Similarity=0.048 Sum_probs=123.7
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHhccC-------CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 038542 45 IHVQNTLVHMYGSCEGGIELGRKVFDEMS-------ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVT 117 (475)
Q Consensus 45 ~~~~~~li~~~~~~gg~~~~A~~~f~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ 117 (475)
..+||+||++|+++| ++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 127 ~~TynaLIdglcK~G-~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTD-QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 358999999999999 9999999997763 58999999999999999999999999999999999999999999
Q ss_pred HHHHHhccCCh-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHc
Q 038542 118 VLSACTDLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-----TIVSWTSVIAGLAMH 191 (475)
Q Consensus 118 ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~ 191 (475)
+|.++++.|.. +.|.+++++|.+.|+.||..+|+++++.+.+.+-++...+++..+..+ .+.+.+.|.+.|.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~d 285 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKD 285 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCCC
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHccC
Confidence 99999999985 789999999999999999999999998888766555555554444321 123444455555554
Q ss_pred C
Q 038542 192 G 192 (475)
Q Consensus 192 g 192 (475)
+
T Consensus 286 ~ 286 (1134)
T 3spa_A 286 G 286 (1134)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.7e-13 Score=135.93 Aligned_cols=367 Identities=8% Similarity=-0.029 Sum_probs=246.6
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CChhHHHHHHHH
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RDSVSWSAMIGG 86 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~~~~~~~li~~ 86 (475)
|...|..++.. .+.|+++.|..+++.+++.- +.+...|..++..+.+.| +++.|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~-~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAK-NYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 55678888874 67899999999999999863 667788999999999998 99999999999875 677778777753
Q ss_pred H-HHcCChhHHHH----HHHHHHH-CCCCC-CHHHHHHHHHHHhc---------cCChHHHHHHHHHHHHcCCCCCccHH
Q 038542 87 Y-ARLGLSTDAID----LFRQMQI-SGVCP-DEITMVTVLSACTD---------LGALEVGKWVESFIEKQMVNRSVGLC 150 (475)
Q Consensus 87 ~-~~~g~~~~A~~----~~~~m~~-~g~~p-~~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 150 (475)
. ...|+.++|.+ +|++... .|..| +...|...+..... .|+++.|..+|+..++........+|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 3 34566666654 6665543 24444 34455555544433 56777777777776652111001122
Q ss_pred HHHHHHH-------------HhcCCHH-----------------------------------------------------
Q 038542 151 NALIDMF-------------AKCGDVD----------------------------------------------------- 164 (475)
Q Consensus 151 ~~li~~y-------------~~~g~~~----------------------------------------------------- 164 (475)
....... .+.++++
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 2111100 0011122
Q ss_pred -------HHHHHHHhcCC---CChhHHHHHHHHHHH-------cCChH-------HHHHHHHHHHHcCCCCCHHHHHHHH
Q 038542 165 -------KALKLFRSMNG---RTIVSWTSVIAGLAM-------HGRGL-------EAVALFEEMLEAGVPPDDVAFVGLL 220 (475)
Q Consensus 165 -------~A~~~~~~~~~---~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~t~~~ll 220 (475)
.|..+|++... .+...|...+..+.+ .|+.+ +|..+|++..+.-.+.+...+..++
T Consensus 249 ~~~~~~~~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~ 328 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYA 328 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHH
Confidence 33344444331 245677777777765 68887 8999999988632234577888889
Q ss_pred HHHhcCCCHHHHHHHHHHhhhhcCCCCC-h-hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcC
Q 038542 221 SACSHCGLVDKGREYFDSMKNDFGIIPK-I-EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-PIIWRTLISA-CCARG 295 (475)
Q Consensus 221 ~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~-~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~~~~~~li~~-~~~~g 295 (475)
..+.+.|++++|..+|+.+.+ +.|+ . ..|..++..+.+.|++++|.++|++. ...|+ ...|...... +...|
T Consensus 329 ~~~~~~g~~~~A~~~~~~al~---~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~ 405 (530)
T 2ooe_A 329 DYEESRMKYEKVHSIYNRLLA---IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSK 405 (530)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH---SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTC
T ss_pred HHHHhcCCHHHHHHHHHHHhC---ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcC
Confidence 999999999999999999886 2454 2 57888899999999999999999988 33332 2333222222 33689
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCC-ccC-CCccEEEECCEEEEEEeCCCCCcc
Q 038542 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGM-KKI-PGSTLIELDNEIYEFVCGDKSHHQ 373 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~-~~~-~~~s~~~~~~~~~~~~~~~~~~~~ 373 (475)
+.++|..+|+++++..|+++..+..++..+.+.|+.++|..++++....+- .+. ...-|..+.. |....+....
T Consensus 406 ~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~----~e~~~G~~~~ 481 (530)
T 2ooe_A 406 DKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA----FESNIGDLAS 481 (530)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH----HHHHSSCHHH
T ss_pred ChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH----HHHHcCCHHH
Confidence 999999999999999999999999999999999999999999999887642 221 1112311111 2222334566
Q ss_pred HHHHHHHHHHHH
Q 038542 374 SKEIYEMLDEMG 385 (475)
Q Consensus 374 ~~~~~~~l~~l~ 385 (475)
...+.....+..
T Consensus 482 ~~~~~~r~~~~~ 493 (530)
T 2ooe_A 482 ILKVEKRRFTAF 493 (530)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHC
Confidence 677766666555
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-15 Score=135.07 Aligned_cols=225 Identities=11% Similarity=-0.046 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC--C----ccHH
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNR--S----VGLC 150 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 150 (475)
...|..+...+...|++++|+..|++..+.. .+...+..+...+...|++++|...+..+.+..... + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456666777777777777777777776654 556666666666677777777777766666542111 1 3455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 230 (475)
..+...|.+.|++++|...|++....+.. ...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSDWP 156 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcCHH
Confidence 55556666666666666655554321100 123444455555555555555531 222334445555555555555
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+|...++...+. .+.+...+..+...|.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.
T Consensus 157 ~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 157 NAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 555555555542 1223444555555555555555555555544 1122 34455555555555555555555555555
Q ss_pred hCC
Q 038542 309 GNE 311 (475)
Q Consensus 309 ~~~ 311 (475)
+..
T Consensus 235 ~~~ 237 (258)
T 3uq3_A 235 TKD 237 (258)
T ss_dssp HHH
T ss_pred HhC
Confidence 444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.8e-15 Score=131.92 Aligned_cols=220 Identities=7% Similarity=-0.035 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---C-------hhHH
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---T-------IVSW 181 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~-------~~~~ 181 (475)
...+..+...+...|++++|...+..+++.. .+..++..+..+|...|++++|...|++..+. + ..+|
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3467778888999999999999999999987 78889999999999999999999999987531 1 5788
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
..+...|...|++++|+..|++.... .|+. ..+...|++++|...++.+.. ..+.+...+..+...+..
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 151 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFT 151 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999985 4554 345566889999999999886 334456788899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHH
Q 038542 262 SGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 262 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
.|++++|...++++ ...| +..+|..+...+...|++++|...++++++..|.++..+..+..+|...|++++|.+.++
T Consensus 152 ~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 152 KSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999988 3333 688999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhC
Q 038542 340 VMDKR 344 (475)
Q Consensus 340 ~m~~~ 344 (475)
...+.
T Consensus 232 ~a~~~ 236 (258)
T 3uq3_A 232 AARTK 236 (258)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 88764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.65 E-value=7.3e-15 Score=129.03 Aligned_cols=195 Identities=13% Similarity=0.002 Sum_probs=150.8
Q ss_pred CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 038542 144 NRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLL 220 (475)
Q Consensus 144 ~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll 220 (475)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 45667778888888888888888888887643 356788888888888889999998888888764 44566778888
Q ss_pred HHHhcC-----------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038542 221 SACSHC-----------GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLI 288 (475)
Q Consensus 221 ~~~~~~-----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li 288 (475)
.++... |++++|...++...+. -+.+...+..+..+|...|++++|...|++. ....+...|..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHH
Confidence 888888 9999999999988863 2335678888999999999999999999887 1116888999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
.++...|++++|...++++++.+|.++..+..+..++...|++++|...+++.
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.1e-14 Score=129.47 Aligned_cols=241 Identities=12% Similarity=-0.052 Sum_probs=173.8
Q ss_pred HcCChhHHHHHHHHHHHCCC--CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHH
Q 038542 89 RLGLSTDAIDLFRQMQISGV--CP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDK 165 (475)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~g~--~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~ 165 (475)
..|++++|++.|+++.+... .| +..++..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 34667777777777776531 11 34566667777777788888888887777764 3356677778888888888888
Q ss_pred HHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 166 ALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 166 A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
|...|++..+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 8888877652 35678888888888888888888888888875 344444444555556678899999999777763
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-----NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 243 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
.+++...+ .++..+...++.++|.+.+++. ...| +..+|..+...+...|++++|...++++.+..|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 3667777788888888888876 3333 2578889999999999999999999999999987754
Q ss_pred hHHHHHHHHHhccChhHHHHHH
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
.+ ..++...|++++|.+.+
T Consensus 251 ~~---~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EH---RYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH---HHHHHHHHHHHHC----
T ss_pred HH---HHHHHHHHHHHhhHHHH
Confidence 43 56777888888887765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.8e-14 Score=129.63 Aligned_cols=249 Identities=8% Similarity=-0.024 Sum_probs=123.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhc
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD--EITMVTVLSACTD 124 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--~~t~~~ll~~~~~ 124 (475)
.....+.+.| ++++|...|++..+ | +...|..+...|...|++++|++.|++....+..|+ ...|..+...+..
T Consensus 8 ~~a~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~ 86 (272)
T 3u4t_A 8 RYADFLFKNN-NYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMK 86 (272)
T ss_dssp HHHHHHHTTT-CHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHH
Confidence 3444455555 66666666555432 1 344555555566666666666666665555221111 1224455555555
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
.|++++|...+..+.+.. +.+..++..+...|...|++++|...|++..+. +...|..+...+...+++++|+..|
T Consensus 87 ~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 87 KGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp TTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555543 223445555555555555555555555554421 3334444441222233555555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCC---HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGL---VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE 278 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 278 (475)
++..+.. +.+...+..+..++...|+ .++|...++...+...-.|+.. - .
T Consensus 166 ~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~-------------------------~ 218 (272)
T 3u4t_A 166 VKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY-K-------------------------D 218 (272)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG-H-------------------------H
T ss_pred HHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc-h-------------------------H
Confidence 5544431 1223333333333333333 3333333333332111111100 0 0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 327 (475)
....+|..+...+...|++++|.+.++++++.+|.++.+...+......
T Consensus 219 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEH 267 (272)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcc
Confidence 0124677788888889999999999999999999887776666555443
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-12 Score=129.70 Aligned_cols=304 Identities=13% Similarity=0.105 Sum_probs=222.8
Q ss_pred HHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCC
Q 038542 33 HGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVC 109 (475)
Q Consensus 33 ~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 109 (475)
++..++.. +-+...|..++. +.+.| +++.|..+|+++.+ | +...|..++..+.+.|++++|..+|+++... .
T Consensus 2 le~al~~~-P~~~~~w~~l~~-~~~~~-~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEEN-PYDLDAWSILIR-EAQNQ-PIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHC-TTCHHHHHHHHH-HHHSS-CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhC-CCCHHHHHHHHH-HHHhC-CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 44555553 567889999998 47777 99999999999875 3 6778999999999999999999999999975 4
Q ss_pred CCHHHHHHHHHHH-hccCChHHHHH----HHHHHHHc-CCCC-CccHHHHHHHHHHh---------cCCHHHHHHHHHhc
Q 038542 110 PDEITMVTVLSAC-TDLGALEVGKW----VESFIEKQ-MVNR-SVGLCNALIDMFAK---------CGDVDKALKLFRSM 173 (475)
Q Consensus 110 p~~~t~~~ll~~~-~~~~~~~~a~~----~~~~~~~~-~~~~-~~~~~~~li~~y~~---------~g~~~~A~~~~~~~ 173 (475)
|+...|...+... ...|+.+.|.+ +|+..++. |..| +..+|...+....+ .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 7777776666532 34566666654 77766643 5444 45677777776655 78999999999986
Q ss_pred CC-CC---hhHHHHHHHH--------------------------HH----------------------------------
Q 038542 174 NG-RT---IVSWTSVIAG--------------------------LA---------------------------------- 189 (475)
Q Consensus 174 ~~-~~---~~~~~~li~~--------------------------~~---------------------------------- 189 (475)
.+ |. ...|...... |.
T Consensus 157 l~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~ 236 (530)
T 2ooe_A 157 CVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKY 236 (530)
T ss_dssp TTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHH
T ss_pred HhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHH
Confidence 54 21 1223211110 00
Q ss_pred -----Hc----CCh----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-------CCCHH-------HHHHHHHHhhhh
Q 038542 190 -----MH----GRG----LEAVALFEEMLEAGVPPDDVAFVGLLSACSH-------CGLVD-------KGREYFDSMKND 242 (475)
Q Consensus 190 -----~~----g~~----~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-------~g~~~-------~a~~~~~~m~~~ 242 (475)
.. ++. ..|..+|++.... .+-+...|...+..+.+ .|+++ +|..+|+...+
T Consensus 237 ~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~- 314 (530)
T 2ooe_A 237 IQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIS- 314 (530)
T ss_dssp HHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHH-
Confidence 00 011 2445566666654 23456677777777764 79987 89999999886
Q ss_pred cCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC-H-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 243 FGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN-P-IIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 243 ~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~-~-~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
.+.| +...|..++..+.+.|++++|..+|+++ ...|+ . ..|..++..+.+.|+++.|..+|+++.+..|.+...|
T Consensus 315 -~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~ 393 (530)
T 2ooe_A 315 -TLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY 393 (530)
T ss_dssp -TTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHH
T ss_pred -HhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHH
Confidence 3344 5788999999999999999999999988 45553 3 5899999999999999999999999999988776666
Q ss_pred HHHHHH-HHhccChhHHHHHHHHHHhC
Q 038542 319 VLLSHI-YAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 319 ~~l~~~-~~~~g~~~~a~~~~~~m~~~ 344 (475)
...+.+ +...|++++|..+|+...+.
T Consensus 394 ~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 394 VTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 655444 34689999999999988764
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.59 E-value=2.8e-12 Score=135.01 Aligned_cols=286 Identities=14% Similarity=0.114 Sum_probs=228.6
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCC
Q 038542 13 YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGL 92 (475)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~ 92 (475)
..-+...|...|.+++|.++|+... ......+.++. ..+ ++++|.++.++.. +..+|..+..++...|+
T Consensus 1052 ~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~-nldrAiE~Aervn--~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1052 APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIG-NLDRAYEFAERCN--EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHh-hHHHHHHHHHhcC--CHHHHHHHHHHHHhCCC
Confidence 3345667778888888888888752 11222233332 556 8999999988764 57889999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 93 STDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 93 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
+++|++.|.+. -|...|..++.+|.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++...+.
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 99999999664 377788899999999999999999999888764 44444556999999999999655443
Q ss_pred cCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHH
Q 038542 173 MNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHY 252 (475)
Q Consensus 173 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~ 252 (475)
..++...|..+...|...|++++|..+|... ..|..+...+.+.|++++|.+.+++.. +..+|
T Consensus 1191 -~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~aW 1253 (1630)
T 1xi4_A 1191 -NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRTW 1253 (1630)
T ss_pred -hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHHH
Confidence 4556777888999999999999999999984 379999999999999999999988763 55889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc--cC
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL--LR 330 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~--g~ 330 (475)
..+..++...|++..|......+ ..++..+..++..|...|.+++|+.+++..++++|.+...|.-|..+|++. ++
T Consensus 1254 kev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pek 1331 (1630)
T 1xi4_A 1254 KEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQK 1331 (1630)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHH
Confidence 99999999999999999877753 345667778999999999999999999999999998888998888888765 34
Q ss_pred hhHHHHHH
Q 038542 331 WEKKTKIR 338 (475)
Q Consensus 331 ~~~a~~~~ 338 (475)
..++.+.|
T Consensus 1332 lmEhlk~f 1339 (1630)
T 1xi4_A 1332 MREHLELF 1339 (1630)
T ss_pred HHHHHHHH
Confidence 44444444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-13 Score=130.45 Aligned_cols=247 Identities=10% Similarity=0.034 Sum_probs=205.9
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCC-hHHHHHHHHHHHHcCCCCCccHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGA-LEVGKWVESFIEKQMVNRSVGLCNAL 153 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l 153 (475)
+...|+.+...+.+.|++++|++.|++.... .| +...|..+..++...|+ +++|...++++++... .+..+|+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~ 172 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHR 172 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHH
Confidence 3568999999999999999999999999985 45 56788888889999996 9999999999998853 377889999
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc-CCCH
Q 038542 154 IDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH-CGLV 229 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~-~g~~ 229 (475)
..+|.+.|++++|+..|+++. ..+..+|..+..++.+.|++++|+..|+++.+.. +-+...|+.+..++.. .|..
T Consensus 173 g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 173 RVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 999999999999999999875 3477899999999999999999999999999874 4467888889999988 6665
Q ss_pred HHH-----HHHHHHhhhhcCCCCChhHHHHHHHHHHHcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC------
Q 038542 230 DKG-----REYFDSMKNDFGIIPKIEHYGCMVDMLCRSG--RVKEAHEFIQKMPIEA-NPIIWRTLISACCARG------ 295 (475)
Q Consensus 230 ~~a-----~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g------ 295 (475)
++| +..++..... -+-+...|..+..+|...| ++++|.+.+.++...| +...+..+...+...|
T Consensus 252 ~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~ 329 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDN 329 (382)
T ss_dssp SHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccc
Confidence 777 4778777752 2335678888888898888 6899999988875455 5778888998888874
Q ss_pred ---CHHHHHHHHHHH-HhCCCCCCchHHHHHHHHHhc
Q 038542 296 ---ELKLAESITKRL-IGNEPMHESNYVLLSHIYAKL 328 (475)
Q Consensus 296 ---~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 328 (475)
..++|.++++++ .+.+|.....|..+...+...
T Consensus 330 ~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 330 KEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 358999999999 899999888888777766543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-13 Score=119.08 Aligned_cols=193 Identities=14% Similarity=0.066 Sum_probs=89.0
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
+...|..+...+.+.|++++|+..|++..+.. +.+...+..+...+.+.|++++|...++..++.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455555555666666666666666555432 2234455555555555666666666665555543 223445555555
Q ss_pred HHHhc-----------CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038542 156 MFAKC-----------GDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221 (475)
Q Consensus 156 ~y~~~-----------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 221 (475)
+|.+. |++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 55555 55555555544432 1133444444445555555555555555544443 34444444555
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK 274 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (475)
++...|++++|...|+...+. .+.+...+..+..++.+.|++++|...|++
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~ 210 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAAL 210 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC-------------
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 555555555555555544431 122334444444444444444444444443
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.57 E-value=4.4e-13 Score=120.20 Aligned_cols=195 Identities=7% Similarity=-0.000 Sum_probs=126.5
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
..+..+...|...|++++|...|+++. ..+...|..+...|...|++++|.+.|+++.+.. +.+...+..+...+.
T Consensus 38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 116 (252)
T 2ho1_A 38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLY 116 (252)
T ss_dssp HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHH
Confidence 445555566666666666666666543 2245566666666666777777777776666543 335556666666677
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~ 301 (475)
..|++++|..+++.+.. .+..| +...+..+...|.+.|++++|.+.++++ ...| +...|..+...+...|++++|.
T Consensus 117 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 195 (252)
T 2ho1_A 117 EQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR 195 (252)
T ss_dssp HTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 77777777777766665 12333 3455666666777777777777777665 2222 4666777777777777777777
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..++++.+..|.+...+..+..+|...|++++|.+.++.+.+.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 7777777777777667777777777777777777777776653
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.56 E-value=7.7e-13 Score=118.63 Aligned_cols=206 Identities=12% Similarity=-0.013 Sum_probs=124.5
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...+..+.+.. +.+..++..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 5678888888888888888888888887642 3355566666666777777777777777766653 2244455555555
Q ss_pred HHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhcCCCHHHHHHH
Q 038542 157 FAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP-DDVAFVGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~ll~~~~~~g~~~~a~~~ 235 (475)
|...|++++|.+.|+++. ..+..| +...+..+...+...|++++|..+
T Consensus 115 ~~~~g~~~~A~~~~~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 163 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEAS-------------------------------QDTLYPERSRVFENLGLVSLQMKKPAQAKEY 163 (252)
T ss_dssp HHHTTCHHHHHHHHHHHT-------------------------------TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHH-------------------------------hCccCcccHHHHHHHHHHHHHcCCHHHHHHH
Confidence 555555555555555543 311222 233444444555555555555555
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
++.+.+. .+.+...+..+...|.+.|++++|...++++ ... .+...+..+...+...|+.++|.+.++++.+..|.
T Consensus 164 ~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 164 FEKSLRL--NRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHhc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC
Confidence 5555442 1223455555666666666666666666555 222 24556666777777777777777777777777776
Q ss_pred CCch
Q 038542 314 HESN 317 (475)
Q Consensus 314 ~~~~ 317 (475)
++..
T Consensus 242 ~~~~ 245 (252)
T 2ho1_A 242 SLEY 245 (252)
T ss_dssp SHHH
T ss_pred CHHH
Confidence 6543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.56 E-value=5.6e-13 Score=116.99 Aligned_cols=195 Identities=12% Similarity=0.050 Sum_probs=116.3
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038542 147 VGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223 (475)
Q Consensus 147 ~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 223 (475)
..++..+...|...|++++|...|++.. ..+...|..+...|...|++++|.+.|+++.+.. +.+..++..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3344555555555555555555555443 2234555556666666666666666666665542 33455566666666
Q ss_pred hcC-CCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 038542 224 SHC-GLVDKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKL 299 (475)
Q Consensus 224 ~~~-g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~ 299 (475)
... |++++|...++.+.+ .+..|+ ...+..+...+...|++++|...++++ ...| +...|..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 666 666666666666655 122232 455566666666666666666666655 2222 45666666666667777777
Q ss_pred HHHHHHHHHhCCC-CCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 300 AESITKRLIGNEP-MHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 300 a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|...++++.+..| .+...+..+...+...|+.+.+...++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777666666 6666666666666667777777666666654
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-12 Score=118.53 Aligned_cols=223 Identities=13% Similarity=-0.045 Sum_probs=131.8
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCccHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD----LGALEVGKWVESFIEKQMVNRSVGLCN 151 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (475)
++.++..+...|...|++++|++.|++..+. -+...+..+...+.. .+++++|...+.+..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 4566677777777777777777777777662 244555556666666 777777777777766654 455666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038542 152 ALIDMFAK----CGDVDKALKLFRSMNG-RTIVSWTSVIAGLAM----HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222 (475)
Q Consensus 152 ~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 222 (475)
.+..+|.. .|++++|...|++..+ .+..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 66666666 6666666666665442 244556666666666 666666666666666644 34445555555
Q ss_pred Hhc----CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh
Q 038542 223 CSH----CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR----SGRVKEAHEFIQKM-PIEANPIIWRTLISACCA 293 (475)
Q Consensus 223 ~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~ 293 (475)
|.. .+++++|...|+...+. + +...+..+..+|.. .+++++|...|++. ... +...+..+...+..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~~~ 230 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQYN 230 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHHHc
Confidence 555 56666666666665542 2 33444555555555 55555555555544 111 24444455555555
Q ss_pred ----cCCHHHHHHHHHHHHhCCC
Q 038542 294 ----RGELKLAESITKRLIGNEP 312 (475)
Q Consensus 294 ----~g~~~~a~~~~~~~~~~~p 312 (475)
.+++++|.+.++++.+.+|
T Consensus 231 g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 231 GEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCCcccCHHHHHHHHHHHHHcCC
Confidence 5555555555555555554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=2.9e-12 Score=116.51 Aligned_cols=223 Identities=10% Similarity=-0.065 Sum_probs=195.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHHHHHHhcCC-CChhHHHHHH
Q 038542 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK----CGDVDKALKLFRSMNG-RTIVSWTSVI 185 (475)
Q Consensus 111 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~~-~~~~~~~~li 185 (475)
+..++..+...+...|++++|...+....+. .+...+..+..+|.. .|++++|...|++..+ .+..++..+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg 81 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG 81 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 5667777888899999999999999999983 355778889999999 9999999999998754 3778899999
Q ss_pred HHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc----CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 186 AGLAM----HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH----CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 186 ~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~----~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|..+|+...+. + +...+..+..
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~ 154 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGS 154 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHH
Confidence 99999 999999999999999875 67888889999998 99999999999999874 4 5677888888
Q ss_pred HHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh--
Q 038542 258 MLCR----SGRVKEAHEFIQKMPIEANPIIWRTLISACCA----RGELKLAESITKRLIGNEPMHESNYVLLSHIYAK-- 327 (475)
Q Consensus 258 ~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~-- 327 (475)
.|.. .+++++|...|++.--..+...+..+...+.. .+++++|...+++..+.+| +..+..|..+|..
T Consensus 155 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~ 232 (273)
T 1ouv_A 155 LYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGE 232 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCC
Confidence 8988 99999999999987222367888889999999 9999999999999999876 5688899999999
Q ss_pred --ccChhHHHHHHHHHHhCC
Q 038542 328 --LLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 328 --~g~~~~a~~~~~~m~~~~ 345 (475)
.+++++|.+.+++..+.|
T Consensus 233 ~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 233 GVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp SSSCCSTTHHHHHHHHHHHT
T ss_pred CcccCHHHHHHHHHHHHHcC
Confidence 999999999999988766
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-13 Score=122.83 Aligned_cols=195 Identities=14% Similarity=0.121 Sum_probs=121.0
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 038542 147 VGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC 223 (475)
Q Consensus 147 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~ 223 (475)
...+..+...+...|++++|...|++..+ .+...|..+...|...|++++|+..|+++.+.. +.+...+..+...+
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 101 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVY 101 (243)
T ss_dssp -------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHH
Confidence 34555566666666777777666666532 245666666677777777777777777766653 33556666677777
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHH
Q 038542 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~ 301 (475)
...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+...|..+...+...|++++|.
T Consensus 102 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 102 VVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHH
Confidence 7777777777777776652 2335566667777777777777777777766 222 25667777777777777777777
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 302 SITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..++++.+..|.+...+..++.+|...|++++|.+.+++..+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 180 SQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777777777777777777777777777777777653
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-13 Score=122.89 Aligned_cols=214 Identities=13% Similarity=0.034 Sum_probs=121.6
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
...+|..+...+...|++++|+..|+++.... +.+...+..+...+...|++++|...+..+.+.. +
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~----------- 88 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-S----------- 88 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T-----------
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C-----------
Confidence 44566666666777777777777777666532 2244455555555555666666666555555442 1
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 235 (475)
.+...|..+...|...|++++|...|+++.+.. +.+...+..+...+...|++++|..+
T Consensus 89 --------------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~ 147 (243)
T 2q7f_A 89 --------------------SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPY 147 (243)
T ss_dssp --------------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred --------------------cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 233445555555555666666666666655543 33455566666666666777777776
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
++.+.+. .+.+...+..+...+.+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++.+..|.
T Consensus 148 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~ 225 (243)
T 2q7f_A 148 LQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPD 225 (243)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTT
T ss_pred HHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcc
Confidence 6666652 2334566667777777777777777777766 222 35777888888888889999999999999888888
Q ss_pred CCchHHHHHHHH
Q 038542 314 HESNYVLLSHIY 325 (475)
Q Consensus 314 ~~~~~~~l~~~~ 325 (475)
++..+..+....
T Consensus 226 ~~~~~~~~~~l~ 237 (243)
T 2q7f_A 226 HMLALHAKKLLG 237 (243)
T ss_dssp CHHHHHHHTC--
T ss_pred hHHHHHHHHHHH
Confidence 877666554443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.6e-12 Score=117.93 Aligned_cols=227 Identities=9% Similarity=-0.085 Sum_probs=183.9
Q ss_pred cchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--CC----hhHHHHH
Q 038542 10 KFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--RD----SVSWSAM 83 (475)
Q Consensus 10 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~~----~~~~~~l 83 (475)
...+......+...|+++.|...++.+++.. +.+...+..+...|.+.| ++++|...|++..+ ++ ..+|..+
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELA-KYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 3455666778899999999999999999874 455668889999999999 99999999988754 22 3358999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHH-HHHHhcCC
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALI-DMFAKCGD 162 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~y~~~g~ 162 (475)
...|...|++++|++.|++..+.. +.+..++..+...+...|++++|...+...++.. +.+..++..+. ..|. .++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~-~~~ 157 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYY-NKE 157 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHH-TTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHH-HHH
Confidence 999999999999999999998853 3366788999999999999999999999988763 34666777777 5554 569
Q ss_pred HHHHHHHHHhcC---CCChhHHHHHHHHHHHcCC---hHHHHHHHHHHHHcC-CCCC------HHHHHHHHHHHhcCCCH
Q 038542 163 VDKALKLFRSMN---GRTIVSWTSVIAGLAMHGR---GLEAVALFEEMLEAG-VPPD------DVAFVGLLSACSHCGLV 229 (475)
Q Consensus 163 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~t~~~ll~~~~~~g~~ 229 (475)
+++|...|++.. ..+...|..+...+...|+ .++|...|++..+.. -.|+ ..+|..+...|...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 999999999875 3356788888888888888 888999999987642 1233 24677788888889999
Q ss_pred HHHHHHHHHhhh
Q 038542 230 DKGREYFDSMKN 241 (475)
Q Consensus 230 ~~a~~~~~~m~~ 241 (475)
++|...|+...+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988886
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-12 Score=114.04 Aligned_cols=209 Identities=13% Similarity=-0.019 Sum_probs=123.2
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
+...|..+...+...|++++|++.|+++.... +.+...+..+...+...|++++|...++.+.+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 72 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK------------- 72 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-------------
Confidence 34455666666666666666666666655532 2234444444455555555555555555554432
Q ss_pred HHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc-CChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH-GRGLEAVALFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~ 233 (475)
..+..+|..+...|... |++++|...++++.+.+..|+ ...+..+..++...|++++|.
T Consensus 73 -------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 133 (225)
T 2vq2_A 73 -------------------PDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAE 133 (225)
T ss_dssp -------------------TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred -------------------CCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHH
Confidence 12334455555555556 666666666666555222232 345566666666667777777
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE--ANPIIWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
..++.+.+. .+.+...+..+...+.+.|++++|...++++ ... .+...+..+...+...|+.+.|..+++.+.+.
T Consensus 134 ~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 134 AYLKRSLAA--QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 766666652 2234566666777777777777777777665 112 35566666677777788888888888888777
Q ss_pred CCCCCchHH
Q 038542 311 EPMHESNYV 319 (475)
Q Consensus 311 ~p~~~~~~~ 319 (475)
.|.++....
T Consensus 212 ~p~~~~~~~ 220 (225)
T 2vq2_A 212 FPYSEELQT 220 (225)
T ss_dssp CTTCHHHHH
T ss_pred CCCCHHHHH
Confidence 777655443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.54 E-value=4.2e-13 Score=131.43 Aligned_cols=311 Identities=10% Similarity=0.050 Sum_probs=191.4
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCH---HHHHHHHhccCCCChhHHHHHHHHHHHcC-
Q 038542 16 VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGI---ELGRKVFDEMSERDSVSWSAMIGGYARLG- 91 (475)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~---~~A~~~f~~~~~~~~~~~~~li~~~~~~g- 91 (475)
+...+.+.|++++|.+++..+.+.| .+ ..+..|..+|...| +. ++|...|++..+.++..+..|...+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g-~~--~A~~~Lg~~y~~~g-~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG-YS--EAQVGLADIQVGTR-DPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT-CC--TGGGTCC-----------------------------CHHHHHHHHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC-CH--HHHHHHHHHHHccC-CCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCC
Confidence 4566778899999999999998887 23 34445666676666 77 89999999988778888888888666665
Q ss_pred ----ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH---HHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC---
Q 038542 92 ----LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE---VGKWVESFIEKQMVNRSVGLCNALIDMFAKCG--- 161 (475)
Q Consensus 92 ----~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--- 161 (475)
++++|+..|++....|.. + .+..+...|...+..+ .+.+.+......| +......|...|...+
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred CCCcCHHHHHHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence 778999999999987633 3 4444555555444332 3344444444443 3456666777777776
Q ss_pred -CHHHHHHHHHhcCCCChhHHHHHHHHHHHcC---ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC----CCHHHHH
Q 038542 162 -DVDKALKLFRSMNGRTIVSWTSVIAGLAMHG---RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC----GLVDKGR 233 (475)
Q Consensus 162 -~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~----g~~~~a~ 233 (475)
+.+.+..+++.....+..++..+...|...| +.++|++.|++..+.| .++...+..|...|... ++.++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 4555666666666666667777777777777 7778888888877776 45555555566666554 6777888
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHH-H--HHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDM-L--CRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARG-----ELKLAESITK 305 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~-~--~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~ 305 (475)
.+|+... +-+...+..|..+ | ...+++++|.+.|++.--..+...+..|...|. .| ++++|...|+
T Consensus 238 ~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 238 ALLEKIA-----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHHHHG-----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHHHHc-----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 8777765 2244555556555 3 356777888887777622235666666666665 44 7777887777
Q ss_pred HHHhCCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCCC
Q 038542 306 RLIGNEPMHESNYVLLSHIYAK----LLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 306 ~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 346 (475)
+.. |.++..+..|..+|.. ..++++|.+.+++..+.|.
T Consensus 312 ~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 353 (452)
T 3e4b_A 312 KAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ 353 (452)
T ss_dssp TTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC
T ss_pred HHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh
Confidence 776 5566777777777766 3377777777777776653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.3e-11 Score=130.10 Aligned_cols=281 Identities=10% Similarity=0.055 Sum_probs=223.9
Q ss_pred cCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHH
Q 038542 22 GIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFR 101 (475)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 101 (475)
..+++++|.++.+.+ .+..+|..+..++.+.| ++++|.+.|.+. .|...|..++.++.+.|++++|++.|.
T Consensus 1088 ~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G-~~kEAIdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~ 1158 (1630)
T 1xi4_A 1088 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKG-MVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQ 1158 (1630)
T ss_pred HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCC-CHHHHHHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445556665555533 45778999999999998 999999999764 678899999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHH
Q 038542 102 QMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSW 181 (475)
Q Consensus 102 ~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~ 181 (475)
..++.. ++....+.+..+|++.++++....+. + .++...+..+.+.|...|++++|..+|... ..|
T Consensus 1159 mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny 1224 (1630)
T 1xi4_A 1159 MARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNF 1224 (1630)
T ss_pred HHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHH
Confidence 887754 34333345888899999988644442 2 345567778999999999999999999985 589
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
..+...|.+.|++++|++.+++. .+..+|..+-.+|...|++..|...... +..++..+..++..|.+
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~ 1292 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQD 1292 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHH
Confidence 99999999999999999999976 4568899999999999999999886653 33467778899999999
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc--CCHHHHHHHHHHHHhCCC-----CCCchHHHHHHHHHhccChh
Q 038542 262 SGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR--GELKLAESITKRLIGNEP-----MHESNYVLLSHIYAKLLRWE 332 (475)
Q Consensus 262 ~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~--g~~~~a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~ 332 (475)
.|.+++|..+++.. +..| ....|.-|...+.+. ++..++.++|..-....| .+...|.-+...|.+.|+|+
T Consensus 1293 ~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A 1293 RGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred cCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence 99999999999877 5554 455676666666654 566667777776555544 45667899999999999999
Q ss_pred HHHHH
Q 038542 333 KKTKI 337 (475)
Q Consensus 333 ~a~~~ 337 (475)
.|...
T Consensus 1373 nA~~t 1377 (1630)
T 1xi4_A 1373 NAIIT 1377 (1630)
T ss_pred HHHHH
Confidence 99843
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.5e-13 Score=132.76 Aligned_cols=265 Identities=12% Similarity=-0.023 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc----C-CCCCccH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDE----ITMVTVLSACTDLGALEVGKWVESFIEKQ----M-VNRSVGL 149 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 149 (475)
.+..+...+...|++++|+..|+++.+.+ +.+. ..+..+...+...|++++|...+.+..+. + .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 34455566667777777777777776642 1122 34555666666777777777777666543 1 1123345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCC---------ChhHHHHHHHHHHHcCC-----------------hHHHHHHHHH
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNGR---------TIVSWTSVIAGLAMHGR-----------------GLEAVALFEE 203 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~g~-----------------~~~A~~l~~~ 203 (475)
+..+...|...|++++|...|++.... ...+|..+...|...|+ +++|+..+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 666777777777777777777664321 23466777777777788 7777777777
Q ss_pred HHHc----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038542 204 MLEA----GVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQK 274 (475)
Q Consensus 204 m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (475)
..+. +..| ...++..+...+...|++++|..+++...+...-.++ ...+..+...|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 5442 1111 2246677777888888888888888877653111112 23677788888888888888888877
Q ss_pred C----CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 275 M----PIEA----NPIIWRTLISACCARGELKLAESITKRLIGNEPM------HESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 275 m----~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
. +... ...++..+...+...|++++|...++++++..+. ...++..+..+|...|++++|.+.+++
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 368 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ 368 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 6 1111 2467778888899999999999999988765422 234778889999999999999999988
Q ss_pred HHhC
Q 038542 341 MDKR 344 (475)
Q Consensus 341 m~~~ 344 (475)
..+.
T Consensus 369 al~~ 372 (411)
T 4a1s_A 369 HLQL 372 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.8e-13 Score=130.36 Aligned_cols=266 Identities=12% Similarity=0.011 Sum_probs=153.6
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCCC-Cc
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD----EITMVTVLSACTDLGALEVGKWVESFIEKQ----MVNR-SV 147 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 147 (475)
...+......+...|++++|+..|++....+ +.+ ...+..+...+...|+++.|...+..+.+. +.+| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445555555666666666666666655532 112 134444555555666666666665554432 1111 13
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHH
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMNG-----RT----IVSWTSVIAGLAMHGR--------------------GLEAV 198 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~ 198 (475)
.++..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 3455556666666666666666655432 11 2355666666666666 66666
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHH
Q 038542 199 ALFEEMLEA----GVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAH 269 (475)
Q Consensus 199 ~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~ 269 (475)
..+++.... +..|. ..++..+...+...|++++|...++...+...-.++ ...+..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 666665432 11111 235666666777777777777777666542111122 235666777777777777777
Q ss_pred HHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CchHHHHHHHHHhccChhHHH
Q 038542 270 EFIQKM----PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMH------ESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 270 ~~~~~m----~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~ 335 (475)
..+++. +..++ ..++..+...+...|++++|...++++.+..+.. ..++..+..+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 777665 11111 4566677777777888888888877776543221 346667777888888888888
Q ss_pred HHHHHHHh
Q 038542 336 KIREVMDK 343 (475)
Q Consensus 336 ~~~~~m~~ 343 (475)
+.+++..+
T Consensus 328 ~~~~~al~ 335 (406)
T 3sf4_A 328 HFAEKHLE 335 (406)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=6.8e-13 Score=120.46 Aligned_cols=235 Identities=9% Similarity=-0.115 Sum_probs=145.7
Q ss_pred CHHHHHHHHhccCCC-------ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 038542 61 GIELGRKVFDEMSER-------DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 133 (475)
++++|...|+++.+. +..+|..+...|...|++++|+..|+++.... +.+..++..+...+...|++++|..
T Consensus 20 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 98 (275)
T 1xnf_A 20 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 98 (275)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 566666666555431 34456666666667777777777776666542 2345666666666777777777777
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC--CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN--GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
.+..+++.. +.+..++..+..+|.+.|++++|...|+++. .|+...+...+..+...|++++|...+++..... ++
T Consensus 99 ~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~ 176 (275)
T 1xnf_A 99 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DK 176 (275)
T ss_dssp HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CC
T ss_pred HHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-Cc
Confidence 777766653 2345666777777777777777777777664 2333333333444455678888888887766653 33
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHH
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK-----IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWR 285 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~ 285 (475)
+...+ .++..+...++.++|...+...... .|+ ...+..+...|.+.|++++|...|+++ ...|+. +.
T Consensus 177 ~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~--~~ 250 (275)
T 1xnf_A 177 EQWGW-NIVEFYLGNISEQTLMERLKADATD---NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN--FV 250 (275)
T ss_dssp CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT--CH
T ss_pred chHHH-HHHHHHHHhcCHHHHHHHHHHHhcc---cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh--HH
Confidence 43333 3666677777778888777766542 221 467777888888888888888888877 555532 22
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 038542 286 TLISACCARGELKLAESIT 304 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~ 304 (475)
....++...|++++|.+.+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 3344566677777776665
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=3e-13 Score=126.23 Aligned_cols=265 Identities=12% Similarity=0.011 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC-CCccH
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGVCPD----EITMVTVLSACTDLGALEVGKWVESFIEKQ----MVN-RSVGL 149 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~ 149 (475)
.+......+...|++++|+..|+++.+.. +.+ ...+..+...+...|+++.|...+....+. +.. ....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34445566667777777777777766642 112 234555666666777777777776665432 111 12445
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCC--------------------hHHHHHH
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNG-----RT----IVSWTSVIAGLAMHGR--------------------GLEAVAL 200 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~--------------------~~~A~~l 200 (475)
+..+...|...|++++|...|++..+ .+ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66677777777888777777766432 12 2366777777777787 7888877
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHH
Q 038542 201 FEEMLEA----GVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 201 ~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
+++.... +..| ...++..+...+...|++++|...++...+...-.++ ...+..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 7776432 1111 1346677778888888999988888877643111111 23677788888899999999888
Q ss_pred HHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CchHHHHHHHHHhccChhHHHHH
Q 038542 272 IQKM----PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMH------ESNYVLLSHIYAKLLRWEKKTKI 337 (475)
Q Consensus 272 ~~~m----~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~a~~~ 337 (475)
+++. +..++ ..++..+...+...|++++|...++++.+..|.. ..++..+..+|...|++++|.+.
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (338)
T 3ro2_A 246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF 325 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 8876 11112 5567788888999999999999999887654322 33677899999999999999999
Q ss_pred HHHHHhC
Q 038542 338 REVMDKR 344 (475)
Q Consensus 338 ~~~m~~~ 344 (475)
+++..+.
T Consensus 326 ~~~a~~~ 332 (338)
T 3ro2_A 326 AEKHLEI 332 (338)
T ss_dssp HHHHHHC
T ss_pred HHHHHHH
Confidence 9888763
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.51 E-value=9e-13 Score=125.44 Aligned_cols=227 Identities=10% Similarity=0.072 Sum_probs=193.6
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC-HHHHHHHHHhcC---CCChhHHHHHHHH
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD-VDKALKLFRSMN---GRTIVSWTSVIAG 187 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~-~~~A~~~~~~~~---~~~~~~~~~li~~ 187 (475)
...|..+...+...|++++|...++.+++.. +.+..+|+.+..+|.+.|+ +++|+..|++.. ..+...|+.+...
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3567777778889999999999999999875 3467889999999999997 999999999876 3477899999999
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH-cCCHH
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR-SGRVK 266 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~g~~~ 266 (475)
+...|++++|+..|+++.+.. +-+...|..+..++...|++++|+..++.+.+. -+-+...|+.+..+|.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999874 456788999999999999999999999999973 34467889999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc--------
Q 038542 267 EA-----HEFIQKM-PIEA-NPIIWRTLISACCARG--ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL-------- 329 (475)
Q Consensus 267 ~A-----~~~~~~m-~~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-------- 329 (475)
+| ...|++. .+.| +...|..+...+...| ++++|.+.++++ +.+|+++..+..|+.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4677766 4455 6789999999998888 689999999998 888999899999999999875
Q ss_pred -ChhHHHHHHHHH-Hh
Q 038542 330 -RWEKKTKIREVM-DK 343 (475)
Q Consensus 330 -~~~~a~~~~~~m-~~ 343 (475)
.+++|.++++++ .+
T Consensus 332 ~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 332 DILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 358999999988 44
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=9.8e-13 Score=126.54 Aligned_cols=295 Identities=13% Similarity=0.012 Sum_probs=180.0
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHhCCCCHHHHHHHHhccCC-----C----
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD----IHVQNTLVHMYGSCEGGIELGRKVFDEMSE-----R---- 75 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~gg~~~~A~~~f~~~~~-----~---- 75 (475)
....+......+...|++++|...++.+.+.+ +.+ ..++..+...|...| ++++|...|++..+ .
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHhccccHH
Confidence 34455556667777888888888888887763 223 245667777777777 88877777765421 1
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------hHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPD----EITMVTVLSACTDLGA--------------------LEV 130 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~ 130 (475)
...+|..+...|...|++++|+..+++...... .++ ..++..+...+...|+ ++.
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 244666677777777777777777766654210 001 2234444444444554 444
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
|...+....+. +.....+ ...+|..+...|...|++++|+..+++..+..
T Consensus 166 A~~~~~~al~~----------------------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 217 (406)
T 3sf4_A 166 AVDFYEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA 217 (406)
T ss_dssp HHHHHHHHHHH----------------------------HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH----------------------------HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 44333333221 1111111 12355666666667777777777776665421
Q ss_pred C-CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC----
Q 038542 209 V-PPD----DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKM---- 275 (475)
Q Consensus 209 ~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m---- 275 (475)
. .++ ..++..+...+...|++++|...++.......-.++ ..++..+...|...|++++|...+++.
T Consensus 218 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 297 (406)
T 3sf4_A 218 KEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIA 297 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHH
Confidence 0 111 235666777777788888888777776542111111 456777778888888888888888776
Q ss_pred CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCchHHHHHHHHHhccChhH
Q 038542 276 PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNE------PMHESNYVLLSHIYAKLLRWEK 333 (475)
Q Consensus 276 ~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~ 333 (475)
+..++ ..++..+...+...|++++|...++++.+.. +....++..+..+|...|+...
T Consensus 298 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 298 QELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHH
Confidence 11112 5577888889999999999999999987653 2224467778888888887643
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.6e-12 Score=122.83 Aligned_cols=297 Identities=12% Similarity=-0.053 Sum_probs=201.8
Q ss_pred CChhHHHHHHHHHHhCCCCHHHHHHHHhccC-----------C-CChhHHHHHHHHHHHcCChhHHHHHHHHHHHC----
Q 038542 43 DDIHVQNTLVHMYGSCEGGIELGRKVFDEMS-----------E-RDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS---- 106 (475)
Q Consensus 43 ~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~-----------~-~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---- 106 (475)
.....||.|...|...| +.++|++.|++.. . ...++|+.+..+|...|++++|+..+++....
T Consensus 49 ~~a~~yn~Lg~~~~~~G-~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKG-QNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp -CCHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 34567888888898888 9999988887642 1 24678999999999999999999999887642
Q ss_pred -C-CCC-CHHHHHHHHHHHhc--cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHH---HhcCCHHHHHHHHHhcC---C
Q 038542 107 -G-VCP-DEITMVTVLSACTD--LGALEVGKWVESFIEKQMVNRSVGLCNALIDMF---AKCGDVDKALKLFRSMN---G 175 (475)
Q Consensus 107 -g-~~p-~~~t~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y---~~~g~~~~A~~~~~~~~---~ 175 (475)
+ ..+ ...++.....++.. .+++++|...|++.++... .++..+..+..++ ...|+.++|.+.|++.. .
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 1 112 24455555545443 4578899999999888742 2455555555553 34566677777777643 3
Q ss_pred CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhH
Q 038542 176 RTIVSWTSVIAGLAM----HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251 (475)
Q Consensus 176 ~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 251 (475)
.+...+..+...+.. .|+.++|.+.+++..... +.+...+..+...+...|++++|...++...+. .+.+...
T Consensus 207 ~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~ 283 (472)
T 4g1t_A 207 DNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPNNAYL 283 (472)
T ss_dssp SCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHH
T ss_pred cchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCChHHH
Confidence 455666666555544 467788999998887764 456677888888999999999999999988863 3335566
Q ss_pred HHHHHHHHHHc-------------------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 252 YGCMVDMLCRS-------------------GRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 252 ~~~li~~~~~~-------------------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
+..+..+|... +..++|...+++. ...| +..+|..+...+...|++++|...|+++++.
T Consensus 284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~ 363 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363 (472)
T ss_dssp HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc
Confidence 76666665432 2345666666665 2223 4556777888888888888898888888888
Q ss_pred CCCCCc---hHHHHHHH-HHhccChhHHHHHHHHHHhC
Q 038542 311 EPMHES---NYVLLSHI-YAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 311 ~p~~~~---~~~~l~~~-~~~~g~~~~a~~~~~~m~~~ 344 (475)
.|++.. .+..+... +...|++++|...+++..+.
T Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i 401 (472)
T 4g1t_A 364 ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI 401 (472)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS
T ss_pred CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 765433 23333333 34678888888888777653
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3e-12 Score=108.85 Aligned_cols=164 Identities=13% Similarity=0.070 Sum_probs=106.6
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
...|..+...|.+.|++++|++.|++..+.. +-+..++..+..++.+.|++++|...+..... ..+.+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 4455566666666666666666666666542 33455566666666666666666666666654 22334455555666
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 258 MLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
.+...+++++|...+.+. ...| +...|..+...+...|++++|++.++++++.+|.++.+|..++.+|.+.|++++|.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 666666776666666665 2223 56667777777777777777777777777777777777777777777777777777
Q ss_pred HHHHHHHhC
Q 038542 336 KIREVMDKR 344 (475)
Q Consensus 336 ~~~~~m~~~ 344 (475)
+.+++..+.
T Consensus 162 ~~~~~al~~ 170 (184)
T 3vtx_A 162 KYFKKALEK 170 (184)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhC
Confidence 777776553
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=7.8e-13 Score=130.33 Aligned_cols=208 Identities=9% Similarity=-0.059 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH-HHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038542 128 LEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV-DKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 128 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
++.+...+....+. .+.+...+..+...|...|++ ++|++.|++.. ..+...|..+...|...|++++|+..|++
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444555544433 233566677777777777777 77777777654 23567888888888888888888888888
Q ss_pred HHHcCCCCCHHHHHHHHHHHhcC---------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc--------CCHH
Q 038542 204 MLEAGVPPDDVAFVGLLSACSHC---------GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS--------GRVK 266 (475)
Q Consensus 204 m~~~g~~p~~~t~~~ll~~~~~~---------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------g~~~ 266 (475)
..+. .|+...+..+..++... |++++|...+++..+. .+.+...|..+..+|... |+++
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 8875 57778888888888888 9999999999988863 344577888888888888 8899
Q ss_pred HHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 267 EAHEFIQKM-PIEA----NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 267 ~A~~~~~~m-~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
+|.+.|++. ...| +...|..+..++...|++++|.+.++++.+.+|.+..++..+..++...|++++|.+.+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999887 3344 7889999999999999999999999999999999999999999999999999999876543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.45 E-value=3.4e-11 Score=111.58 Aligned_cols=218 Identities=9% Similarity=0.013 Sum_probs=146.2
Q ss_pred hHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHcCCCCCccHHHHHHHHHHh
Q 038542 94 TDAIDLFRQMQISGVCPDEITMVTVLSACT-------DLGAL-------EVGKWVESFIEKQMVNRSVGLCNALIDMFAK 159 (475)
Q Consensus 94 ~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~ 159 (475)
++|+.+|++..... +-+...|..+...+. ..|++ ++|..++++.++.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666676666531 224445555555443 24664 6777777777763122345567777777777
Q ss_pred cCCHHHHHHHHHhcCC--C-Chh-HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hcCCCHHHHHH
Q 038542 160 CGDVDKALKLFRSMNG--R-TIV-SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC-SHCGLVDKGRE 234 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~--~-~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~-~~~g~~~~a~~ 234 (475)
.|++++|..+|++..+ | +.. .|..+...+.+.|++++|..+|++..+.. +++...|....... ...|+.++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 7777777777777643 2 333 67777777778888888888888877753 33344444333332 23688888888
Q ss_pred HHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 235 YFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-P---IEA--NPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 235 ~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~---~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+|+...+. .+.+...|..++..+.+.|++++|..+|++. . +.| ....|..++......|+.+.|..+++++.
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88887763 2335677778888888888888888888877 1 344 46678888888888888888888888888
Q ss_pred hCCCCCC
Q 038542 309 GNEPMHE 315 (475)
Q Consensus 309 ~~~p~~~ 315 (475)
+..|++.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 8887654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=124.72 Aligned_cols=267 Identities=10% Similarity=-0.010 Sum_probs=187.4
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-Ch----hHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CH
Q 038542 45 IHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DS----VSWSAMIGGYARLGLSTDAIDLFRQMQIS----GVCP-DE 112 (475)
Q Consensus 45 ~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~ 112 (475)
...+..+...+...| ++++|...|++..+ | +. ..|..+...|...|++++|+..|++.... +-.| ..
T Consensus 48 ~~~l~~~g~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 126 (411)
T 4a1s_A 48 CLELALEGERLCNAG-DCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA 126 (411)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhC-cHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence 344455666667777 77777777776643 2 22 36777777777778888887777776542 1112 23
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcC-----CCCCccHHHHHHHHHHhcCC-----------------HHHHHHHH
Q 038542 113 ITMVTVLSACTDLGALEVGKWVESFIEKQM-----VNRSVGLCNALIDMFAKCGD-----------------VDKALKLF 170 (475)
Q Consensus 113 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~li~~y~~~g~-----------------~~~A~~~~ 170 (475)
.++..+...+...|++++|...+....+.. .+....++..+...|...|+ +++|...+
T Consensus 127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~ 206 (411)
T 4a1s_A 127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFY 206 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHH
Confidence 456666677777888888877777766431 11234467777888888888 88888877
Q ss_pred HhcCC-----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 171 RSMNG-----R----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPD----DVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 171 ~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
++..+ . ...+|..+...|...|++++|+..|++..+... .++ ..++..+...+...|++++|...+
T Consensus 207 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 286 (411)
T 4a1s_A 207 QENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHY 286 (411)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 76532 1 234777788888999999999999988765311 112 236778888999999999999999
Q ss_pred HHhhhhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038542 237 DSMKNDFGIIP----KIEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEA-NPIIWRTLISACCARGELKLAESIT 304 (475)
Q Consensus 237 ~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 304 (475)
+.......-.. ....+..+...|...|++++|...+++. +..+ ...++..+...+...|++++|...+
T Consensus 287 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 366 (411)
T 4a1s_A 287 KRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYA 366 (411)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence 88765311111 2467888899999999999999999877 1111 2457788889999999999999999
Q ss_pred HHHHhCCC
Q 038542 305 KRLIGNEP 312 (475)
Q Consensus 305 ~~~~~~~p 312 (475)
+++.+..+
T Consensus 367 ~~al~~~~ 374 (411)
T 4a1s_A 367 EQHLQLAX 374 (411)
T ss_dssp HHHHHHCC
T ss_pred HHHHHHHh
Confidence 99988764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.44 E-value=5.2e-12 Score=107.38 Aligned_cols=166 Identities=13% Similarity=0.042 Sum_probs=137.1
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 222 (475)
+..+|..+...|.+.|++++|++.|++.. ..+..+|..+...|.+.|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 55678888888888888888888888764 3467788888888999999999999998887763 4456677777888
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 300 (475)
+...++++.+...+..... -.+.+...+..+..+|.+.|++++|.+.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8889999999999988876 33446678888889999999999999999887 3444 678899999999999999999
Q ss_pred HHHHHHHHhCCCCC
Q 038542 301 ESITKRLIGNEPMH 314 (475)
Q Consensus 301 ~~~~~~~~~~~p~~ 314 (475)
.+.++++++.+|.+
T Consensus 161 ~~~~~~al~~~p~~ 174 (184)
T 3vtx_A 161 VKYFKKALEKEEKK 174 (184)
T ss_dssp HHHHHHHHHTTHHH
T ss_pred HHHHHHHHhCCccC
Confidence 99999999998865
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.43 E-value=4e-12 Score=118.53 Aligned_cols=270 Identities=13% Similarity=0.026 Sum_probs=156.4
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCC----hhHHHHHHHHHHhCCCCHHHHHHHHhccCC---------CChhH
Q 038542 13 YPFVLKACAGIGDLNLGKSVHGAVLKFQFGDD----IHVQNTLVHMYGSCEGGIELGRKVFDEMSE---------RDSVS 79 (475)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~----~~~~~~li~~~~~~gg~~~~A~~~f~~~~~---------~~~~~ 79 (475)
+......+...|+++.|...++.+.+.. +.+ ..++..+...|...| ++++|.+.|++..+ ....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 4444566777888888888888888764 223 356677777777777 88888887766432 12446
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCC--------------------hHHHHHH
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGV-CPD----EITMVTVLSACTDLGA--------------------LEVGKWV 134 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~--------------------~~~a~~~ 134 (475)
|..+...|...|++++|+..+.+...... .++ ..++..+...+...|+ ++.|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 77777777777888877777777654210 011 2244445555555555 5555544
Q ss_pred HHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CC
Q 038542 135 ESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PP 211 (475)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p 211 (475)
+....+. +.....+ ....+..+...|...|++++|...+++..+... .+
T Consensus 166 ~~~a~~~----------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 217 (338)
T 3ro2_A 166 YEENLSL----------------------------VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG 217 (338)
T ss_dssp HHHHHHH----------------------------HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH----------------------------HHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcC
Confidence 4443321 0011000 122444455555555566555555555443200 01
Q ss_pred C----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-------C
Q 038542 212 D----DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKM-------P 276 (475)
Q Consensus 212 ~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~ 276 (475)
+ ..++..+...+...|++++|..+++.......-.++ ...+..+...|...|++++|...+++. +
T Consensus 218 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 297 (338)
T 3ro2_A 218 DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 297 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC
Confidence 1 225555666666666666666666655432111111 345666677777777777777777665 1
Q ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 277 IEA-NPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 277 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
..+ ...++..+...+...|++++|...++++.+..+
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 334 (338)
T 3ro2_A 298 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 334 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC--
T ss_pred CcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 111 244677788888888889999888888887654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-11 Score=117.51 Aligned_cols=288 Identities=10% Similarity=0.042 Sum_probs=149.8
Q ss_pred HHcCCCcHHHHHHHHHHHHh--cCCCC--hhHHHHHHHHHH--hCCCCHHHHH-----------HHHhccCC-C-Chh--
Q 038542 20 CAGIGDLNLGKSVHGAVLKF--QFGDD--IHVQNTLVHMYG--SCEGGIELGR-----------KVFDEMSE-R-DSV-- 78 (475)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~~~--g~~~~--~~~~~~li~~~~--~~gg~~~~A~-----------~~f~~~~~-~-~~~-- 78 (475)
+.+.+++++|..+.+.+.+. .+..| ...|-.++..-. -.+ +++.+. +.++.+.. + +..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~-~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~ 100 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLE-YLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGL 100 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH-HHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHh-hcCcccccccccccchhhHHHHHHhcCCCchhH
Confidence 34678899999998888664 22223 333333333211 111 222233 34443321 1 111
Q ss_pred ----HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC----
Q 038542 79 ----SWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPD----EITMVTVLSACTDLGALEVGKWVESFIEKQMVNR---- 145 (475)
Q Consensus 79 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---- 145 (475)
.|......+...|++++|+..|++....-. .+| ..++..+...+...|+++.|...+.+..+.....
T Consensus 101 l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 180 (383)
T 3ulq_A 101 LEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYN 180 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTH
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccch
Confidence 122355667778888888888888765310 122 2456666667777777777777777766431111
Q ss_pred --CccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-
Q 038542 146 --SVGLCNALIDMFAKCGDVDKALKLFRSMNG-----RT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEA----GV- 209 (475)
Q Consensus 146 --~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~- 209 (475)
...+++.+...|...|++++|...|++..+ .+ ..+|..+...|...|++++|+..|++..+. +.
T Consensus 181 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~ 260 (383)
T 3ulq_A 181 IRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL 260 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence 123556666667777777777666665431 11 135555666666666666666666665541 22
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCCChhHHHHHHHHHHHcCC---HHHHHHHHHhCCCCCC-HH
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDF---GIIPKIEHYGCMVDMLCRSGR---VKEAHEFIQKMPIEAN-PI 282 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~p~-~~ 282 (475)
+....++..+...+...|++++|...++...+.. +.+.....+..+...|...|+ +++|..++++.+..|+ ..
T Consensus 261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~ 340 (383)
T 3ulq_A 261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLED 340 (383)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHH
Confidence 2223455566666666666666666665554321 111111223344444555555 5555555555533221 22
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 283 IWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
.+..+...|...|++++|...++++.
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34444445555555555555555444
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.3e-11 Score=118.26 Aligned_cols=284 Identities=9% Similarity=-0.013 Sum_probs=201.1
Q ss_pred HhCCCCHHHHHHHHhccCC--------CChhHHHHHHHH--HHHcCChhHHH-----------HHHHHHHHCCCCCCHHH
Q 038542 56 GSCEGGIELGRKVFDEMSE--------RDSVSWSAMIGG--YARLGLSTDAI-----------DLFRQMQISGVCPDEIT 114 (475)
Q Consensus 56 ~~~gg~~~~A~~~f~~~~~--------~~~~~~~~li~~--~~~~g~~~~A~-----------~~~~~m~~~g~~p~~~t 114 (475)
.+.+ ++++|..+++++.+ ++...|..++.. ..-.+..+.+. +.++.+.... ++...
T Consensus 23 i~~~-~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 23 IRRF-SIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHTT-CHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHc-CHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 4556 99999998877642 234444444432 11223334444 6666665421 11121
Q ss_pred HH------HHHHHHhccCChHHHHHHHHHHHHc----CCCC-CccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC-
Q 038542 115 MV------TVLSACTDLGALEVGKWVESFIEKQ----MVNR-SVGLCNALIDMFAKCGDVDKALKLFRSMNG-----RT- 177 (475)
Q Consensus 115 ~~------~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~- 177 (475)
+. .....+...|++++|...+....+. +-++ ...++..+...|...|++++|...+++..+ ++
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 21 2445578899999999999999864 1111 345788899999999999999998887542 12
Q ss_pred ----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CC
Q 038542 178 ----IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPD----DVAFVGLLSACSHCGLVDKGREYFDSMKNDF---GI 245 (475)
Q Consensus 178 ----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~ 245 (475)
..+++.+...|...|++++|+..|++..+... .++ ..++..+...|...|++++|...+++..+-. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 35788899999999999999999999875311 122 2478889999999999999999999887621 23
Q ss_pred -CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC
Q 038542 246 -IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEANPIIWRTLISACCARGE---LKLAESITKRLIGNEPMH 314 (475)
Q Consensus 246 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~p~~ 314 (475)
+....++..+...|.+.|++++|...+++. +.......+..+...+...|+ +++|..++++. ...|..
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~ 338 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADL 338 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHH
Confidence 334567888999999999999999999887 111122335667778888888 77777777765 222444
Q ss_pred CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 315 ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 315 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
...+..++..|...|++++|.+.+++..+
T Consensus 339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 55788999999999999999999998865
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.1e-12 Score=121.28 Aligned_cols=166 Identities=13% Similarity=0.049 Sum_probs=104.7
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------C
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQIS-------GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ------M 142 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~ 142 (475)
+..+|..+...|...|++++|+.+|+++... ..+.....+..+...+...|++++|...+..+++. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4567888899999999999999999988762 11223456667777788888888888888877654 1
Q ss_pred C-CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc---
Q 038542 143 V-NRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-------R----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA--- 207 (475)
Q Consensus 143 ~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--- 207 (475)
. +....++..+...|...|++++|...|++..+ + ....|..+...|...|++++|+..|+++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1 22344566677777777777777777665431 1 1234555556666666666666666665543
Q ss_pred ---CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 208 ---GVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 208 ---g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
+..|+ ..++..+...+...|++++|..+++.+.+
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 223 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILT 223 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11222 23455555566666666666666655553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-12 Score=121.01 Aligned_cols=246 Identities=11% Similarity=0.045 Sum_probs=158.3
Q ss_pred ChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--------C---ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC------
Q 038542 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--------R---DSVSWSAMIGGYARLGLSTDAIDLFRQMQIS------ 106 (475)
Q Consensus 44 ~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------ 106 (475)
+..++..+...|...| ++++|..+|++..+ . ...+|..+...|...|++++|+..+++....
T Consensus 26 ~~~~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQG-RYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence 4567888888899988 99999999988754 1 3557888999999999999999999988764
Q ss_pred CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC--
Q 038542 107 GVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQ------MV-NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-- 176 (475)
Q Consensus 107 g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-- 176 (475)
+-.| ...++..+...+...|++++|...+..+.+. +. +....++..+...|...|++++|...|++....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2223 3457777888899999999999999988864 22 223456788889999999999999988876421
Q ss_pred ---------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC
Q 038542 177 ---------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP 247 (475)
Q Consensus 177 ---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p 247 (475)
...+|..+...|...|++++|...|+++.+.. |+. .+..+- ........
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~~---~~~~~~~~---------------- 242 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSVD---DENKPIWM---------------- 242 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHHH----------------
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCCC---cchHHHHH----------------
Confidence 23578888899999999999999999987641 110 000000 00000000
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKMP-IEA-NPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
....+..+...+...+.+.+|...++... ..| +..+|..+...|...|++++|.+.++++++..|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 01112222223333444444555555442 222 345667777777777777777777777766544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=7.2e-10 Score=105.50 Aligned_cols=263 Identities=15% Similarity=0.011 Sum_probs=171.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-C----ccHHH
Q 038542 81 SAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI----TMVTVLSACTDLGALEVGKWVESFIEKQMVNR-S----VGLCN 151 (475)
Q Consensus 81 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~ 151 (475)
......+...|++++|...+++........+.. ++..+...+...|+++.|...+.+..+..... + ..++.
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 97 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI 97 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 344455666777888887777776643222222 34444555667788888877777766432111 1 12345
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCC----------C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC--C--CHHHH
Q 038542 152 ALIDMFAKCGDVDKALKLFRSMNG----------R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP--P--DDVAF 216 (475)
Q Consensus 152 ~li~~y~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p--~~~t~ 216 (475)
.+...|...|++++|...+++... + ....+..+...+...|++++|...+++....... + ...++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 177 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL 177 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence 667778888888888887776531 1 1235566777788888888888888887664221 1 23567
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH-----HHHHHHHHcCCHHHHHHHHHhC-CCCCC-----HHHHH
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG-----CMVDMLCRSGRVKEAHEFIQKM-PIEAN-----PIIWR 285 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~-----~li~~~~~~g~~~~A~~~~~~m-~~~p~-----~~~~~ 285 (475)
..+...+...|++++|...++.......-......+. ..+..+...|++++|...+++. ...|. ...+.
T Consensus 178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 257 (373)
T 1hz4_A 178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR 257 (373)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence 7777888888999999998888765311111111121 2334477889999999999887 22221 33566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCC-----C-CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 286 TLISACCARGELKLAESITKRLIGNEPM-----H-ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~~~p~-----~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.+...+...|++++|...++++.+..+. . ...+..+..+|...|++++|...++....
T Consensus 258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778888999999999999887654321 1 13566778889999999999998888765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-11 Score=125.81 Aligned_cols=163 Identities=17% Similarity=0.120 Sum_probs=132.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
..+|+.|...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|+..|++..+. -+-+...|..+..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567777778888888888888888877753 334667778888888888888888888887752 2234677888888
Q ss_pred HHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHH
Q 038542 258 MLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~ 335 (475)
+|.+.|++++|.+.|++. .+.| +...|..+..++...|++++|++.++++++++|++..++..|+.+|...|+|++|.
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 888888888888888877 4455 57889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHh
Q 038542 336 KIREVMDK 343 (475)
Q Consensus 336 ~~~~~m~~ 343 (475)
+.+++..+
T Consensus 166 ~~~~kal~ 173 (723)
T 4gyw_A 166 ERMKKLVS 173 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887754
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.35 E-value=7.5e-11 Score=115.40 Aligned_cols=311 Identities=14% Similarity=0.043 Sum_probs=207.2
Q ss_pred HHHHHcCCCc---HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCC----CCHHHHHHHHhccCCC-ChhHHHHHHHHHH
Q 038542 17 LKACAGIGDL---NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCE----GGIELGRKVFDEMSER-DSVSWSAMIGGYA 88 (475)
Q Consensus 17 l~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~g----g~~~~A~~~f~~~~~~-~~~~~~~li~~~~ 88 (475)
-..+...|+. ++|...+....+. +...+..|..++...+ ++.++|...|++..++ +...+..|...|.
T Consensus 42 g~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~ 117 (452)
T 3e4b_A 42 ADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYL 117 (452)
T ss_dssp C--------------------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHH
T ss_pred HHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3344556666 8999999888854 4455666666444433 2678999999887654 5668888999998
Q ss_pred HcCChh---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC---C
Q 038542 89 RLGLST---DAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG---D 162 (475)
Q Consensus 89 ~~g~~~---~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g---~ 162 (475)
..+... ++.+.+......| +......+...+...+.++.+......+.+.-...++..+..|..+|.+.| +
T Consensus 118 ~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~ 194 (452)
T 3e4b_A 118 QYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQ 194 (452)
T ss_dssp HCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHH
T ss_pred hCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccc
Confidence 876644 4555555555544 334455566666666644444333333332223334558889999999999 9
Q ss_pred HHHHHHHHHhcCCC---ChhHHHHHHHHHHHc----CChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--hcCCCHHHH
Q 038542 163 VDKALKLFRSMNGR---TIVSWTSVIAGLAMH----GRGLEAVALFEEMLEAGVPPDDVAFVGLLSA-C--SHCGLVDKG 232 (475)
Q Consensus 163 ~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~--~~~g~~~~a 232 (475)
.++|...|++..+. +...+..+...|... ++.++|+..|++.. .| +...+..|... + ...++.++|
T Consensus 195 ~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A 270 (452)
T 3e4b_A 195 QAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQM 270 (452)
T ss_dssp HHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHH
Confidence 99999999987532 444446677777554 68999999999987 43 44455555555 3 568999999
Q ss_pred HHHHHHhhhhcCCCCChhHHHHHHHHHHHcC-----CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 038542 233 REYFDSMKNDFGIIPKIEHYGCMVDMLCRSG-----RVKEAHEFIQKMPIEANPIIWRTLISACCA----RGELKLAESI 303 (475)
Q Consensus 233 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~ 303 (475)
..+|+...+. | +...+..|..+|. .| ++++|.+.|++.- ..++..+..|...|.. ..++++|...
T Consensus 271 ~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 344 (452)
T 3e4b_A 271 MKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDH 344 (452)
T ss_dssp HHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHH
T ss_pred HHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHH
Confidence 9999998874 5 6677788888887 55 9999999999998 6688888888877776 3499999999
Q ss_pred HHHHHhCCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCCC
Q 038542 304 TKRLIGNEPMHESNYVLLSHIYAK----LLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 304 ~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 346 (475)
+++..+.+ ++.....|..+|.. ..+.++|...++...+.|.
T Consensus 345 ~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~ 389 (452)
T 3e4b_A 345 LLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDT 389 (452)
T ss_dssp HHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99998866 45678889999875 4589999999999888774
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.34 E-value=4.1e-11 Score=101.33 Aligned_cols=160 Identities=14% Similarity=0.023 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 225 (475)
.+..+...|...|++++|...|+++.+. +...|..+...+...|++++|...++++.+.. +.+...+..+...+..
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~ 88 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQ 88 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4445555666666666666666665432 34455555555555555555555555555432 2234444444444555
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 038542 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITK 305 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 305 (475)
.|++++|..+++.+.+. . +.+...|..+...+...|++++|...++
T Consensus 89 ~~~~~~A~~~~~~~~~~--~--------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 134 (186)
T 3as5_A 89 VQKYDLAVPLLIKVAEA--N--------------------------------PINFNVRFRLGVALDNLGRFDEAIDSFK 134 (186)
T ss_dssp HTCHHHHHHHHHHHHHH--C--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHhc--C--------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 55555555555444431 1 1244555555666666666666666666
Q ss_pred HHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 306 RLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 306 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
++.+..|.++..+..++.+|...|++++|.+.++...+
T Consensus 135 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 135 IALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666666666666666666665544
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-10 Score=106.86 Aligned_cols=212 Identities=9% Similarity=0.046 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHHcCCCCCccHHHHHHHHHH-------hcCCH-------HHHHHHHHhcCC---C-ChhHHHHHHHHHHH
Q 038542 129 EVGKWVESFIEKQMVNRSVGLCNALIDMFA-------KCGDV-------DKALKLFRSMNG---R-TIVSWTSVIAGLAM 190 (475)
Q Consensus 129 ~~a~~~~~~~~~~~~~~~~~~~~~li~~y~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 190 (475)
+.|..+|+++++.. +.++.+|..++..+. +.|++ ++|..+|++... | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67788888888763 457778888888776 35885 899999998654 2 56789999999999
Q ss_pred cCChHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH-HcCCHHH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPD-DV-AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC-RSGRVKE 267 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~-~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~g~~~~ 267 (475)
.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+...+. .+++...|........ ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999984 554 33 7888999999999999999999999863 2344555554444432 3699999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCC-CCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGN---EPM-HESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
|..+|++. ...| +...|..++..+...|++++|..+|+++++. .|. ....|..++..+.+.|++++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988 2223 6889999999999999999999999999986 343 5567888999999999999999999998
Q ss_pred HhCC
Q 038542 342 DKRG 345 (475)
Q Consensus 342 ~~~~ 345 (475)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 7643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-10 Score=97.78 Aligned_cols=159 Identities=16% Similarity=0.033 Sum_probs=121.3
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGL 188 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 188 (475)
...+..+...+...|++++|...+..+.+.. +.+..++..+...|...|++++|...|++.. ..+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3456677788899999999999999887653 3467788899999999999999999999865 34678899999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
...|++++|.+.++++.... +.+...+..+...+...|++++|..+++.+.+. . +.+...+..+...+...|++++|
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-R-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-C-ccchHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999998863 456777888888888889999998888887763 1 22334444444444444444444
Q ss_pred HHHHHh
Q 038542 269 HEFIQK 274 (475)
Q Consensus 269 ~~~~~~ 274 (475)
.+.+++
T Consensus 164 ~~~~~~ 169 (186)
T 3as5_A 164 LPHFKK 169 (186)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.30 E-value=5e-11 Score=117.38 Aligned_cols=209 Identities=9% Similarity=-0.112 Sum_probs=178.5
Q ss_pred CHHHHHHHHhccCC---CChhHHHHHHHHHHHcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 038542 61 GIELGRKVFDEMSE---RDSVSWSAMIGGYARLGLS-TDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136 (475)
Q Consensus 61 ~~~~A~~~f~~~~~---~~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 136 (475)
.++.+...+++... .+...|..+...|...|++ ++|++.|++..+.. +-+...+..+...+...|++++|...++
T Consensus 83 ~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 57777777766543 3778999999999999999 99999999998753 3357788899999999999999999999
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhc---------CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHc--------CChHH
Q 038542 137 FIEKQMVNRSVGLCNALIDMFAKC---------GDVDKALKLFRSMN---GRTIVSWTSVIAGLAMH--------GRGLE 196 (475)
Q Consensus 137 ~~~~~~~~~~~~~~~~li~~y~~~---------g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~--------g~~~~ 196 (475)
.+++.. |+...+..+...|... |++++|...|++.. ..+...|..+..+|... |++++
T Consensus 162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~ 239 (474)
T 4abn_A 162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQ 239 (474)
T ss_dssp HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHH
Confidence 998864 5578888999999999 99999999999865 34678999999999988 99999
Q ss_pred HHHHHHHHHHcCCC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Q 038542 197 AVALFEEMLEAGVP---PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQ 273 (475)
Q Consensus 197 A~~l~~~m~~~g~~---p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 273 (475)
|+..|++..+.. + -+...+..+..+|...|++++|...|+...+. .+.+...+..+..++...|++++|.+.+.
T Consensus 240 A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 240 ALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAAL--DPAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999863 2 37889999999999999999999999998873 23456778899999999999999999888
Q ss_pred hC
Q 038542 274 KM 275 (475)
Q Consensus 274 ~m 275 (475)
++
T Consensus 317 ~~ 318 (474)
T 4abn_A 317 KT 318 (474)
T ss_dssp TC
T ss_pred cc
Confidence 77
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=9.4e-11 Score=111.97 Aligned_cols=162 Identities=11% Similarity=0.040 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCCChhH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEA----GVPP-DDVAFVGLLSACSHCGLVDKGREYFDSMKNDF---GIIPKIEH 251 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p~~~~ 251 (475)
+++.+...|...|++++|++.|++..+. +-.+ ...++..+..+|...|++++|...++....-. +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3444445555555555555555544331 1000 11234445555555555555555555544310 11112344
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CC--CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCchHHHH
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM----PI--EA-NPIIWRTLISACCARGE---LKLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m----~~--~p-~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
+..+...|.+.|++++|...+++. .. .| ....+..+...+...++ +++|...+++. ...|.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 455555555555555555555544 10 11 12233333334444455 44444444431 1112223345556
Q ss_pred HHHHHhccChhHHHHHHHHHH
Q 038542 322 SHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+..|...|++++|.+.+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666665553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-09 Score=104.33 Aligned_cols=304 Identities=11% Similarity=0.019 Sum_probs=211.8
Q ss_pred CCCCcchHHHHHHHH--HcCCCcHHHHHHHHHHHHhc--CCCC--hhHHHHHHHHH----H-hCCCCHH---------HH
Q 038542 6 VSPNKFTYPFVLKAC--AGIGDLNLGKSVHGAVLKFQ--FGDD--IHVQNTLVHMY----G-SCEGGIE---------LG 65 (475)
Q Consensus 6 ~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~g--~~~~--~~~~~~li~~~----~-~~gg~~~---------~A 65 (475)
+.|+...-+.+-.-+ ...+++++|..+.+.+.+.. +..| ...|-.|+..- . ... ... .+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~-~~~~~~~~~~~~~~ 84 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLE-PGKTYGNRPTVTEL 84 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCC-C--------CHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcC-cccccccccchHHH
Confidence 345555445555555 67899999999999987642 2223 33334444321 1 111 122 33
Q ss_pred HHHHhccCCC--Ch---hHHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHH
Q 038542 66 RKVFDEMSER--DS---VSWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPD----EITMVTVLSACTDLGALEVGKWVE 135 (475)
Q Consensus 66 ~~~f~~~~~~--~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~t~~~ll~~~~~~~~~~~a~~~~ 135 (475)
.+-.+....+ +. ..|......+...|++++|+..|++...... .++ ..++..+...+...|+++.|...+
T Consensus 85 l~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~ 164 (378)
T 3q15_A 85 LETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHI 164 (378)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 3333332222 11 1234455667889999999999999876411 123 346777888899999999999999
Q ss_pred HHHHHcCCC------CCccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHH
Q 038542 136 SFIEKQMVN------RSVGLCNALIDMFAKCGDVDKALKLFRSMNG-----RT----IVSWTSVIAGLAMHGRGLEAVAL 200 (475)
Q Consensus 136 ~~~~~~~~~------~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l 200 (475)
....+.... ....+++.+...|...|++++|...|++..+ .+ ..+++.+...|...|++++|+..
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 988754211 1245677899999999999999999987642 12 25788889999999999999999
Q ss_pred HHHHHHc----CCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC---CCChhHHHHHHHHHHHcCC---HHHHHH
Q 038542 201 FEEMLEA----GVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI---IPKIEHYGCMVDMLCRSGR---VKEAHE 270 (475)
Q Consensus 201 ~~~m~~~----g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~---~p~~~~~~~li~~~~~~g~---~~~A~~ 270 (475)
|++..+. +.+....++..+...+.+.|++++|..+++...+...- +.....+..+...|...|+ +.+|..
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 9998761 22334678888999999999999999999998764222 2223455666667777888 899999
Q ss_pred HHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 271 FIQKMPIEAN-PIIWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 271 ~~~~m~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
.+++.+..|+ ...+..+...|...|++++|...++++.+.
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 9999755443 346677888999999999999999987653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-10 Score=100.91 Aligned_cols=204 Identities=12% Similarity=0.062 Sum_probs=154.4
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHH
Q 038542 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIA 186 (475)
Q Consensus 110 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 186 (475)
.|+..+......+...|++++|...+...++...+++...+..+..+|.+.|++++|...|++..+ .+...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 456778888888999999999999999999886546777777799999999999999999988753 35578888999
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC---hhHHHHHH
Q 038542 187 GLAMHGRGLEAVALFEEMLEAGVPPDD-------VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK---IEHYGCMV 256 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 256 (475)
.|...|++++|+..|++..+.. +.+. ..|..+...+...|++++|...|+...+ ..|+ ...+..+.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l~ 160 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSLG 160 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHHH
Confidence 9999999999999999998853 3334 4577778888899999999999998875 3454 56777777
Q ss_pred HHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 257 DMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 257 ~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
.+|...|+. .++++ .+ ..+...|.... ....+.+++|...++++.+..|.++.+...+..+
T Consensus 161 ~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 161 VLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 777665543 22332 11 12344444433 3345678999999999999999987766666544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.26 E-value=2.8e-10 Score=100.20 Aligned_cols=189 Identities=8% Similarity=-0.049 Sum_probs=116.8
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcC---C-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMN---G-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLS 221 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~ 221 (475)
++..+..+...|.+.|++++|...|++.. . ++...|..+..++...|++++|+..|++..+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 44566667777777777777777777653 2 455566667777777777777777777777642 223456666777
Q ss_pred HHhcCCCHHHHHHHHHHhhhhcCCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHH
Q 038542 222 ACSHCGLVDKGREYFDSMKNDFGIIPKI-------EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN---PIIWRTLISA 290 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~ 290 (475)
++...|++++|...++...+. .+.+. ..|..+...+...|++++|.+.|++. ...|+ ...|..+...
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 777777777777777776653 12223 34566666666777777777777665 44554 3455555555
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 291 CCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+.. .+...++++....+.+...|..+ .....+.+++|...+++..+.
T Consensus 163 ~~~-----~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYN-----NGADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHH-----HHHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 533 33444555555555444333332 233445668888888877653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.21 E-value=4.1e-09 Score=100.24 Aligned_cols=232 Identities=9% Similarity=-0.054 Sum_probs=132.0
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHc----CCC--C-C
Q 038542 79 SWSAMIGGYARLGLSTDAIDLFRQMQISGV-CPDE----ITMVTVLSACTDLGALEVGKWVESFIEKQ----MVN--R-S 146 (475)
Q Consensus 79 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~ 146 (475)
+++.+...+...|++++|.+.+++...... .++. .++..+...+...|++++|...++...+. +.. | .
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~ 134 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 134 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence 344455555556666666666655543110 0111 12334444555666666666666655532 111 1 1
Q ss_pred ccHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HHHH
Q 038542 147 VGLCNALIDMFAKCGDVDKALKLFRSMNG----R----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD--DVAF 216 (475)
Q Consensus 147 ~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~ 216 (475)
...+..+...|...|++++|...+++... . ...+|..+...+...|++++|...+++.......++ ....
T Consensus 135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 214 (373)
T 1hz4_A 135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 214 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHH
Confidence 23445566666777777777776665321 0 124566666777777888888888777654311111 1111
Q ss_pred H----HHHHHHhcCCCHHHHHHHHHHhhhhcCCCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH-
Q 038542 217 V----GLLSACSHCGLVDKGREYFDSMKNDFGIIP---KIEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEANP- 281 (475)
Q Consensus 217 ~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~- 281 (475)
. ..+..+...|++++|...++..... ...+ ....+..+...+...|++++|...+++. +..++.
T Consensus 215 ~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~ 293 (373)
T 1hz4_A 215 SNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLN 293 (373)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhCCCC-CCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHH
Confidence 1 2233466788888888888777642 2111 1224556677788888888888887765 211122
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
..+..+..++...|+.++|...+++.....
T Consensus 294 ~~~~~la~~~~~~g~~~~A~~~l~~al~~~ 323 (373)
T 1hz4_A 294 RNLLLLNQLYWQAGRKSDAQRVLLDALKLA 323 (373)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHh
Confidence 255666777888888888888888877554
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.4e-10 Score=105.27 Aligned_cols=118 Identities=13% Similarity=0.031 Sum_probs=56.3
Q ss_pred HcCChhHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHc------CC-CCCccHHHHHH
Q 038542 89 RLGLSTDAIDLFRQMQIS-------GVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQ------MV-NRSVGLCNALI 154 (475)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~-------g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~li 154 (475)
..|++++|+.+|++..+. ..+....++..+...+...|++++|...+..+.+. +- +....++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 345555555555555431 11112344555555566666666666666655543 11 11233455555
Q ss_pred HHHHhcCCHHHHHHHHHhcCC-------C----ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 155 DMFAKCGDVDKALKLFRSMNG-------R----TIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 155 ~~y~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
..|...|++++|...|++... + ...+|..+...|...|++++|+..|++..+
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 155 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALE 155 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555544321 0 123344444444444555555444444433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=5.9e-10 Score=102.35 Aligned_cols=185 Identities=10% Similarity=0.011 Sum_probs=114.3
Q ss_pred HHHhcCCHHHHHHHHHhcCC-------C--ChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMNG-------R--TIVSWTSVIAGLAMHGRGLEAVALFEEMLEA----GVPP-DDVAFVGLLS 221 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~ 221 (475)
.|...|++++|...|.+... + ...+|+.+...|...|++++|+..|++..+. |-.+ -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555544321 1 1245666666666777777777666665442 1100 1346777778
Q ss_pred HHhcC-CCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 038542 222 ACSHC-GLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA---NP-----IIWRTL 287 (475)
Q Consensus 222 ~~~~~-g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~-----~~~~~l 287 (475)
.|... |++++|...|++..+-..-..+ ..++..+...|.+.|++++|...|++. ...| .. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 8888888888877653111111 346777888888999999999888876 2222 21 156777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCch-----HHHHHHHHH--hccChhHHHHHHHH
Q 038542 288 ISACCARGELKLAESITKRLIGNEPMHESN-----YVLLSHIYA--KLLRWEKKTKIREV 340 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~a~~~~~~ 340 (475)
..++...|+++.|...+++.++..|..... +..++..|. ..+++++|.+.++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~ 265 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 888888999999999999999988865443 334555554 44667777776644
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=2e-09 Score=110.61 Aligned_cols=160 Identities=14% Similarity=0.051 Sum_probs=99.8
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
+.+|+.|...|.+.|++++|++.|++..+. .| +..++..+..++.+.|++++|...+++.++.. +.+..+|..|..
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 455666666666666666666666666653 33 34556666666666666666666666666653 224556666666
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHH
Q 038542 156 MFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKG 232 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a 232 (475)
+|.+.|++++|++.|++.. ..+..+|+.+...|.+.|++++|++.|++..+.. +-+...+..+..++...|++++|
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A 164 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDY 164 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHH
Confidence 6666666666666666543 2345666666666777777777777777666642 22355666666667777776666
Q ss_pred HHHHHHhh
Q 038542 233 REYFDSMK 240 (475)
Q Consensus 233 ~~~~~~m~ 240 (475)
.+.+++..
T Consensus 165 ~~~~~kal 172 (723)
T 4gyw_A 165 DERMKKLV 172 (723)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=1.5e-09 Score=99.56 Aligned_cols=244 Identities=10% Similarity=-0.070 Sum_probs=135.6
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHhC-CCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHH
Q 038542 27 NLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSC-EGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQI 105 (475)
Q Consensus 27 ~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~-gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 105 (475)
.+|.+++.+..+.- +++...+ .+ +... ++++++|...|++. ...|...|++++|++.|.+...
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~---~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KL---FSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HH---HSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hh---cCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 35677777777762 3322222 22 2211 21488888777653 7788888999999988887754
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhH
Q 038542 106 S----GVCPD-EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVS 180 (475)
Q Consensus 106 ~----g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~ 180 (475)
. |-+++ ..+|..+..++...|++++|...++..++.. ...|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------THRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHHHH-----------HHH
Confidence 2 21111 3466666667777777777777766665421 112222211 123
Q ss_pred HHHHHHHHHHc-CChHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-Ch----
Q 038542 181 WTSVIAGLAMH-GRGLEAVALFEEMLEAGVP-PD----DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KI---- 249 (475)
Q Consensus 181 ~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~---- 249 (475)
|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|...|+...+. .... ..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~ 198 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS-SMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TSSCTTTGGGH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HhcCCcccHHH
Confidence 45555666664 6666666666665542100 01 234566666777777777777777766652 2111 11
Q ss_pred -hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHhCCCC
Q 038542 250 -EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANP------IIWRTLISACC--ARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 250 -~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~~~~~~p~ 313 (475)
..|..+..++...|++++|...|++. .+.|+. ..+..++.++. ..+++++|...++++...+|.
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~ 272 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKW 272 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHH
Confidence 14555666677777777777777766 333321 12334444543 345577777777666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.4e-08 Score=91.34 Aligned_cols=205 Identities=11% Similarity=0.017 Sum_probs=134.0
Q ss_pred CccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-C---hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC-CCC-HHHHH
Q 038542 146 SVGLCNALIDMFAKCGDVDKALKLFRSMNG--R-T---IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV-PPD-DVAFV 217 (475)
Q Consensus 146 ~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~t~~ 217 (475)
+...+-.+...+.+.|++++|...|+++.. | + ...|..+..+|.+.|++++|+..|++..+... .|. ...+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 445555666777777777777777777653 2 2 45666677777777777777777777776421 112 34455
Q ss_pred HHHHHHhc--------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 038542 218 GLLSACSH--------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLIS 289 (475)
Q Consensus 218 ~ll~~~~~--------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~ 289 (475)
.+..++.. .|++++|...|+.+.+.+ +.+......+.......+.+ ...+..+..
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 56666666 777777777777776531 11222222211111110000 112466788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHhc----------cChhHHHHHHHHHHhCCCccCCCccEEE
Q 038542 290 ACCARGELKLAESITKRLIGNEPMHE---SNYVLLSHIYAKL----------LRWEKKTKIREVMDKRGMKKIPGSTLIE 356 (475)
Q Consensus 290 ~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~~~~~~s~~~ 356 (475)
.+...|++++|...++++++..|.++ ..+..++.+|... |++++|...++.+.+..
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~----------- 225 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF----------- 225 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-----------
Confidence 89999999999999999999988754 4788889999877 89999999999887642
Q ss_pred ECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHH
Q 038542 357 LDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKK 390 (475)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~ 390 (475)
..++...++...+.++...+.+
T Consensus 226 ------------p~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 226 ------------PDSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TTCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CCChHHHHHHHHHHHHHHHHHH
Confidence 2356667777777776666544
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.7e-09 Score=96.65 Aligned_cols=131 Identities=11% Similarity=0.042 Sum_probs=90.6
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHcC------
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQIS------GVCP-DEITMVTVLSACTDLGALEVGKWVESFIEKQM------ 142 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~------ 142 (475)
...+|..+...|...|++++|+..|++.... +-.| ...++..+...+...|++++|...+..+.+..
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3567888889999999999999999888754 2223 34567778888889999999999988887641
Q ss_pred -CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 143 -VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-----------TIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 143 -~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
.+....++..+...|...|++++|...|++..+. ...++..+...|...|++++|...|++..+
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1224567778888899999999998888765321 123444455555555555555555555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.07 E-value=1.9e-07 Score=94.87 Aligned_cols=335 Identities=9% Similarity=-0.025 Sum_probs=223.6
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCC---HHHHHHHHhccCC-----CChhH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGG---IELGRKVFDEMSE-----RDSVS 79 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~---~~~A~~~f~~~~~-----~~~~~ 79 (475)
-|..+|..++..+.+.+.++.+..+++.++.. ++.....|..-+..-.+.+ + ++.+..+|++... |++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~-~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKM-EELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC---CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 46778999999999999999999999999987 5778888999999988888 8 9999999999764 68888
Q ss_pred HHHHHHHHHHcCCh--------hHHHHHHHHHHH-CCC-CCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHH
Q 038542 80 WSAMIGGYARLGLS--------TDAIDLFRQMQI-SGV-CPD-EITMVTVLSACT---------DLGALEVGKWVESFIE 139 (475)
Q Consensus 80 ~~~li~~~~~~g~~--------~~A~~~~~~m~~-~g~-~p~-~~t~~~ll~~~~---------~~~~~~~a~~~~~~~~ 139 (475)
|...+....+.++. +...++|+.... .|. .|+ ...|...+.... ..+.++.+..+|..++
T Consensus 142 W~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL 221 (679)
T 4e6h_A 142 WLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLL 221 (679)
T ss_dssp HHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHH
Confidence 99888776665553 234477776554 466 554 445555554432 2334667778887776
Q ss_pred HcCCCCCccHHHHHH---HHH----------HhcCCHHHHHHHHH-----------------------------------
Q 038542 140 KQMVNRSVGLCNALI---DMF----------AKCGDVDKALKLFR----------------------------------- 171 (475)
Q Consensus 140 ~~~~~~~~~~~~~li---~~y----------~~~g~~~~A~~~~~----------------------------------- 171 (475)
......-..+|.... ..+ -...+++.|...+.
T Consensus 222 ~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~q 301 (679)
T 4e6h_A 222 CQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQ 301 (679)
T ss_dssp TSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHH
T ss_pred hCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHH
Confidence 431111111221111 000 00011222222222
Q ss_pred --------------------------------hcC---CCChhHHHHHHHHHHHcCChHHHH-HHHHHHHHcCCCCCHHH
Q 038542 172 --------------------------------SMN---GRTIVSWTSVIAGLAMHGRGLEAV-ALFEEMLEAGVPPDDVA 215 (475)
Q Consensus 172 --------------------------------~~~---~~~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t 215 (475)
+.. ..+...|-..+.-+...|+.++|. ++|++.... ++.+...
T Consensus 302 l~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~L 380 (679)
T 4e6h_A 302 LLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVL 380 (679)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHH
T ss_pred HHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHH
Confidence 111 012234444455556678888886 999988875 4556666
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcC--------CCCC------------hhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFG--------IIPK------------IEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--------~~p~------------~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
+...+......|+++.|..+|+.+..... -.|+ ...|...+....+.|.++.|..+|.++
T Consensus 381 wl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A 460 (679)
T 4e6h_A 381 AFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKC 460 (679)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 67778888889999999999998886310 0132 346788888888899999999999887
Q ss_pred -CC--CCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 276 -PI--EANPIIWRTLISACCAR-GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 276 -~~--~p~~~~~~~li~~~~~~-g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.. .+...+|...+..-... ++.+.|..+|+.+++..|.++..+...+......|+.+.|..+|++.....
T Consensus 461 ~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~ 534 (679)
T 4e6h_A 461 RRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI 534 (679)
T ss_dssp HHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred HHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 21 11233443333323333 458999999999999888888888888888888999999999999887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.06 E-value=6e-09 Score=82.56 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=57.8
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLC 260 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 260 (475)
|..+...+...|++++|..+|+++.+.. +.+...+..+...+...|++++|..+++.+... .+.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 4445555555555555555555555432 233444455555555555555555555555432 1222333334444444
Q ss_pred HcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 038542 261 RSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNE 311 (475)
Q Consensus 261 ~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 311 (475)
+.|++++|.+.++++ ... .+..+|..+...+...|++++|...++++.+..
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 444444444444333 111 123334444444444444444444444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.05 E-value=5.5e-08 Score=88.06 Aligned_cols=235 Identities=13% Similarity=0.074 Sum_probs=135.0
Q ss_pred CCCCHHHHHHHHhccCCCC-hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHH
Q 038542 58 CEGGIELGRKVFDEMSERD-SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVES 136 (475)
Q Consensus 58 ~gg~~~~A~~~f~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 136 (475)
.| .+..+..-...+...+ ...-.-+.++|...|++... ..-.|....+..+... ...+ +...++
T Consensus 26 ~G-~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a~~~l~ 90 (310)
T 3mv2_B 26 TG-NFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----NIEELE 90 (310)
T ss_dssp TT-CHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----CCHHHH
T ss_pred hh-HHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----HHHHHH
Confidence 45 7777777555554322 22233345777777776642 1123343333333332 2222 455555
Q ss_pred HHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC-----CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCC
Q 038542 137 FIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-----RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPP 211 (475)
Q Consensus 137 ~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 211 (475)
...+.+ +++......+..+|...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+. .|
T Consensus 91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~ 167 (310)
T 3mv2_B 91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE 167 (310)
T ss_dssp HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence 555444 33444455667777777888888777777632 23456666777777778888888888777663 45
Q ss_pred -----CHHHHHHHHHHHh----cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC----
Q 038542 212 -----DDVAFVGLLSACS----HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI---- 277 (475)
Q Consensus 212 -----~~~t~~~ll~~~~----~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---- 277 (475)
+..+...|..++. ..++.++|..+|+++... .|+..+...++.++.+.|++++|.+.++.+ ..
T Consensus 168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 3455555555522 233777777777777643 343223333444677777777777777654 11
Q ss_pred ------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC
Q 038542 278 ------EA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 278 ------~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~ 315 (475)
.| |+.+...+|......|+ .|.++++++.+..|+++
T Consensus 245 ~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 245 EQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred cccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 13 45555455555555565 66777777777777664
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=1.5e-08 Score=91.81 Aligned_cols=240 Identities=8% Similarity=0.019 Sum_probs=150.6
Q ss_pred HHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCH
Q 038542 84 IGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDV 163 (475)
Q Consensus 84 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~ 163 (475)
++-..-.|++..++.-..++.. ........-+.+++...|++... ..-.|.......+ ..|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~l-a~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLY-VQFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHH-HHHHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHH-HHHhccc--
Confidence 4445567888887773332221 11223333455667666665531 1112222233332 3333322
Q ss_pred HHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhcCCCHHHHHHHHHHh
Q 038542 164 DKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVP-PDDVAFVGLLSACSHCGLVDKGREYFDSM 239 (475)
Q Consensus 164 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~ll~~~~~~g~~~~a~~~~~~m 239 (475)
|...|++... ++..++..+..++...|++++|++++.+....|.. -+...+..++..+.+.|+.+.|.+.++.|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776553 34555567777888888888888888887665431 24556777788888888888888888888
Q ss_pred hhhcCCCC-----ChhHHHHHHHHH--HHcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 240 KNDFGIIP-----KIEHYGCMVDML--CRSG--RVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 240 ~~~~~~~p-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
.+. .| +..+...|..++ ...| ++.+|..+|+++ ...|+..+-..++.++...|++++|++.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 753 45 245555555552 2233 788888888888 3345533334444577888888888888887766
Q ss_pred C----------CCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 310 N----------EPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 310 ~----------~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
. +|.++.++..++..+...|+ +|.++++++++..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 4 47777777777777777776 7788888887643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.04 E-value=4.5e-09 Score=94.59 Aligned_cols=202 Identities=9% Similarity=-0.040 Sum_probs=144.1
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC---ccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C----ChhH
Q 038542 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS---VGLCNALIDMFAKCGDVDKALKLFRSMNG--R----TIVS 180 (475)
Q Consensus 110 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~----~~~~ 180 (475)
.+...+-.....+.+.|++++|...+..+++.... + ..++..+..+|.+.|++++|...|++..+ | ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 35667777788889999999999999999987432 3 56778889999999999999999998753 2 1356
Q ss_pred HHHHHHHHHH--------cCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhH
Q 038542 181 WTSVIAGLAM--------HGRGLEAVALFEEMLEAGVPPDD-VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEH 251 (475)
Q Consensus 181 ~~~li~~~~~--------~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~ 251 (475)
+..+..++.. .|++++|+..|++..+.. |+. .....+ ..+...... -...
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~ 150 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARK 150 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHH
Confidence 7778888888 999999999999998853 442 222111 111111111 1123
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHhCCCCCCc
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM----PIEA-NPIIWRTLISACCAR----------GELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m----~~~p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
+..+...|.+.|++++|...|+++ |-.+ ....+..+..++... |++++|...++++++..|+++.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 230 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPL 230 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChH
Confidence 556777888889999998888877 2222 245677777777766 8999999999999999998854
Q ss_pred ---hHHHHHHHHHhccChhH
Q 038542 317 ---NYVLLSHIYAKLLRWEK 333 (475)
Q Consensus 317 ---~~~~l~~~~~~~g~~~~ 333 (475)
+...+..++...+++++
T Consensus 231 ~~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 231 LRTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 34445555555555443
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.02 E-value=6.3e-09 Score=82.45 Aligned_cols=128 Identities=18% Similarity=0.202 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~~ 292 (475)
.+..+...+...|++++|..+++.+.+. .+.+...+..+...+...|++++|...++++ .. +.+...|..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 4667788899999999999999999873 2446778888999999999999999999987 22 336788999999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
..|++++|.+.++++.+..|.+...+..++.+|...|++++|...++.+.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999999999988889999999999999999999999988764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.00 E-value=1.3e-09 Score=112.27 Aligned_cols=169 Identities=12% Similarity=-0.020 Sum_probs=118.2
Q ss_pred HhcCCHHHHHHHHHhcC-----------CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC
Q 038542 158 AKCGDVDKALKLFRSMN-----------GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC 226 (475)
Q Consensus 158 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~ 226 (475)
...|++++|.+.|++.. ..+...|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 56777777777777664 2355677777777777788888888887777653 33556777777777777
Q ss_pred CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 038542 227 GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESIT 304 (475)
Q Consensus 227 g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~ 304 (475)
|++++|...|++..+. .+.+...|..+..+|.+.|++++ .+.|++. ...| +...|..+..++...|++++|...+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888887777752 22345667777777777788777 7777766 3334 5667777777788888888888888
Q ss_pred HHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 305 KRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 305 ~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
+++.+.+|.+..++..+..+|...++
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 88877777777777777777755444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-08 Score=93.25 Aligned_cols=176 Identities=9% Similarity=-0.037 Sum_probs=140.4
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 163 VDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 163 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
.+.....+......+...+..+...+.+.|++++|...|++..+.. +-+...+..+...+...|++++|...++.+...
T Consensus 102 ~~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 102 EEAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 3445555555555556677778888899999999999999998863 446678888999999999999999999988753
Q ss_pred cCCCCChhHHHHH-HHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--Cch
Q 038542 243 FGIIPKIEHYGCM-VDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH--ESN 317 (475)
Q Consensus 243 ~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~ 317 (475)
.|+....... ...+.+.++.++|...+++. ...| +...+..+...+...|++++|...++++++.+|.+ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 4554433322 33366777888888888776 3344 68899999999999999999999999999999987 778
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHH
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
+..|+.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887654
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.8e-08 Score=85.68 Aligned_cols=179 Identities=8% Similarity=0.032 Sum_probs=115.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcCC--CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH----HHHH
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMNG--RT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD----VAFV 217 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~ 217 (475)
..+..+...+.+.|++++|...|+++.. |+ ...+..+..+|.+.|++++|+..|++..+.. |+. ..+.
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~ 82 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHH
Confidence 3455566777888888888888887652 22 2456667778888888888888888887753 322 1333
Q ss_pred HHHHHHhc------------------CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038542 218 GLLSACSH------------------CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279 (475)
Q Consensus 218 ~ll~~~~~------------------~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 279 (475)
.+..++.. .|+.++|...|+.+.+. .+-+...+.+...... .....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~----~~~~~---------- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVF----LKDRL---------- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHH----HHHHH----------
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHH----HHHHH----------
Confidence 34444432 35566666666666542 1111222211111000 00000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---chHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE---SNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
......+...+...|+++.|...++++++..|.++ .++..+..+|.+.|++++|.+.++.+...+
T Consensus 147 -~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 147 -AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred -HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 01113456678899999999999999999998875 468889999999999999999999888765
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.4e-10 Score=92.00 Aligned_cols=137 Identities=9% Similarity=-0.019 Sum_probs=87.6
Q ss_pred HcCChHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 190 MHGRGLEAVALFEEMLEAGVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 190 ~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
..|++++|+..++..... .|+ ...+..+...|.+.|++++|...|+...+. -+-+...|..+..+|.+.|++++|
T Consensus 9 ~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~~A 84 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTDKA 84 (150)
T ss_dssp CHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchHHH
Confidence 345555555555554332 222 234445556666666666666666666542 223455666666666666677776
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 269 HEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESI-TKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 269 ~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~-~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
...|++. .+.| +...|..+...+...|++++|.+. ++++++++|.++.+|.....++...|+
T Consensus 85 ~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 85 VECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 6666665 3344 567788888888888888766554 588888889888888888888777764
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.93 E-value=3.6e-08 Score=101.42 Aligned_cols=189 Identities=14% Similarity=0.051 Sum_probs=149.9
Q ss_pred hccCChHHHHHHHHHHH--------HcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHc
Q 038542 123 TDLGALEVGKWVESFIE--------KQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMH 191 (475)
Q Consensus 123 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 191 (475)
...|++++|...++... +. .+.+...+..+...|.+.|++++|.+.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 78899999999999988 43 244677888899999999999999999998763 4778999999999999
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
|++++|+..|++..+.. +-+...+..+..++...|++++ ...|+...+. -+.+...|..+..+|.+.|++++|.+.
T Consensus 481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999999998864 3456788889999999999999 9999998863 234667899999999999999999999
Q ss_pred HHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHhCCCCCCc
Q 038542 272 IQKM-PIEAN-PIIWRTLISACCARGE-----LKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 272 ~~~m-~~~p~-~~~~~~li~~~~~~g~-----~~~a~~~~~~~~~~~p~~~~ 316 (475)
|++. ...|+ ...|..+..++...++ .+...++.+.+....+.++.
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 9998 66775 5677778888766555 34444555555555544444
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.92 E-value=9.1e-07 Score=89.89 Aligned_cols=213 Identities=8% Similarity=-0.022 Sum_probs=160.2
Q ss_pred HHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH-HHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 131 GKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL-KLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 131 a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
...+|++.+.. ++.+..+|-..+..+...|+.++|. ++|++... .+...|-..+...-+.|++++|.++|+++..
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45567766665 3446667777788888889988896 88887642 3566788888888899999999999999886
Q ss_pred cC---------CCCC------------HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC-C
Q 038542 207 AG---------VPPD------------DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG-R 264 (475)
Q Consensus 207 ~g---------~~p~------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~ 264 (475)
.. -.|+ ...|...+....+.|..+.|..+|....+. -..+....|...+..-.+.+ +
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCC
Confidence 41 0132 235777777777889999999999999873 12223445554444444554 4
Q ss_pred HHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC---CCchHHHHHHHHHhccChhHHHHHHH
Q 038542 265 VKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM---HESNYVLLSHIYAKLLRWEKKTKIRE 339 (475)
Q Consensus 265 ~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~a~~~~~ 339 (475)
.+.|.++|+.. ....+...|...+.-....|+.+.|..+|++++...|+ ....|...+..-.+.|+.+.+.++.+
T Consensus 486 ~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 486 TKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 89999999987 22336778888888888899999999999999998873 34567888888889999999999999
Q ss_pred HHHhCC
Q 038542 340 VMDKRG 345 (475)
Q Consensus 340 ~m~~~~ 345 (475)
++.+.-
T Consensus 566 R~~~~~ 571 (679)
T 4e6h_A 566 RFFEKF 571 (679)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 998754
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.9e-08 Score=84.48 Aligned_cols=76 Identities=8% Similarity=-0.129 Sum_probs=60.7
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH--ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|...+++. ...| +...+..+...+...|++++|...++++++.+|.. ...+..+..+|...|+.++|...+++...
T Consensus 93 a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 93 ELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 45555544 2344 57888889999999999999999999999998765 45888999999999999999988877643
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=101.92 Aligned_cols=160 Identities=12% Similarity=0.056 Sum_probs=126.4
Q ss_pred cCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 160 CGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 160 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
.|++++|.+.|++..+ .+...|..+...|.+.|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 4789999999998764 356889999999999999999999999998864 445788999999999999999999999
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhCC
Q 038542 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR---GELKLAESITKRLIGNE 311 (475)
Q Consensus 237 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~---g~~~~a~~~~~~~~~~~ 311 (475)
++..+. .+.+...+..+..+|.+.|++++|.+.+++. ...| +...+..+...+... |+.++|.+.++++++.+
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 999873 3445788999999999999999999999987 3344 678899999999999 99999999999999999
Q ss_pred CCCCchHHHHH
Q 038542 312 PMHESNYVLLS 322 (475)
Q Consensus 312 p~~~~~~~~l~ 322 (475)
|.+...|..+.
T Consensus 159 p~~~~~~~~l~ 169 (568)
T 2vsy_A 159 VGAVEPFAFLS 169 (568)
T ss_dssp CCCSCHHHHTT
T ss_pred CcccChHHHhC
Confidence 99888887765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=3e-08 Score=99.99 Aligned_cols=147 Identities=10% Similarity=-0.057 Sum_probs=111.1
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
.|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+ .+...|..+...|...|++++|.+.|
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 478899999999888763 33677889999999999999999999998754 35688999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc---CCHHHHHHHHHhC
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS---GRVKEAHEFIQKM 275 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m 275 (475)
++..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 81 ~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 81 QQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9998864 446778899999999999999999999998873 234567888999999999 9999999999887
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.88 E-value=6.1e-08 Score=89.47 Aligned_cols=219 Identities=14% Similarity=0.018 Sum_probs=155.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHH
Q 038542 90 LGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKL 169 (475)
Q Consensus 90 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~ 169 (475)
.|++++|.+++++..+.. +.. + +...++++.|...+..+ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~------~---~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS------F---MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC------S---SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc------c---cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 567888998888876531 111 0 11146777777776654 4567888999999888
Q ss_pred HHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhcCCCHHHHHHH
Q 038542 170 FRSMNG-----RT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEAG---VPPD--DVAFVGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 170 ~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~t~~~ll~~~~~~g~~~~a~~~ 235 (475)
|.+... .+ ..+|+.+...|...|++++|+..|++..+.- -.|. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 876542 12 3578888899999999999999999876531 1122 3577888888988 999999999
Q ss_pred HHHhhhhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC---CCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 038542 236 FDSMKNDFGIIP----KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI---EAN----PIIWRTLISACCARGELKLAESI 303 (475)
Q Consensus 236 ~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~---~p~----~~~~~~li~~~~~~g~~~~a~~~ 303 (475)
|++...-+.-.. ...++..+...|.+.|++++|...|++. .+ .++ ...+..+...+...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998775321111 1467888899999999999999999887 11 112 23566777778888999999999
Q ss_pred HHHHHhCCCCCCch-----HHHHHHHHHhccChhHHHH
Q 038542 304 TKRLIGNEPMHESN-----YVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 304 ~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~a~~ 336 (475)
+++.+ ..|..... ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88865433 33445555 5677665555
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=6e-09 Score=85.13 Aligned_cols=122 Identities=13% Similarity=0.021 Sum_probs=101.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG 295 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 295 (475)
|...+...|++++|+..+..... ..| +...+..+...|.+.|++++|.+.|++. .+.| +..+|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 34455667889999998887764 233 3456677899999999999999999988 4555 7889999999999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHH-HHHHHh
Q 038542 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKI-REVMDK 343 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~ 343 (475)
++++|...++++++.+|.++.++..+..+|.+.|++++|.+. +++..+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999887765 466554
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-07 Score=80.71 Aligned_cols=160 Identities=11% Similarity=-0.055 Sum_probs=108.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC----CHHHHHHHHHHhhhhcCCCCChhHH
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG----LVDKGREYFDSMKNDFGIIPKIEHY 252 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g----~~~~a~~~~~~m~~~~~~~p~~~~~ 252 (475)
+..++..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|..+|+...+. | +...+
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a~ 88 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSGE 88 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 55555566666666666666666666666654 44455555555655 5 677777777776552 2 45556
Q ss_pred HHHHHHHHH----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 253 GCMVDMLCR----SGRVKEAHEFIQKM-PIEAN---PIIWRTLISACCA----RGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 253 ~~li~~~~~----~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
..|..+|.. .+++++|.++|++. ...|+ +..+..|...|.. .+++++|...+++..+. |.++..+..
T Consensus 89 ~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~ 167 (212)
T 3rjv_A 89 IVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYW 167 (212)
T ss_dssp HHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHH
T ss_pred HHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHH
Confidence 666666665 66777777777776 33332 6677777777777 77888888888888877 445667888
Q ss_pred HHHHHHhc-c-----ChhHHHHHHHHHHhCC
Q 038542 321 LSHIYAKL-L-----RWEKKTKIREVMDKRG 345 (475)
Q Consensus 321 l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 345 (475)
|..+|... | ++++|.+.++...+.|
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88888754 3 7888888888877766
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.83 E-value=7.7e-08 Score=83.25 Aligned_cols=128 Identities=8% Similarity=-0.002 Sum_probs=92.8
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc
Q 038542 183 SVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS 262 (475)
Q Consensus 183 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 262 (475)
.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+...+. -+.+...+..+...|...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~ 135 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLT 135 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHH
Confidence 37778888899999999998888763 445678888888888899999999999888863 234567777787777655
Q ss_pred CC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 263 GR--VKEAHEFIQKMPIEANP--IIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 263 g~--~~~A~~~~~~m~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
|. .+.+...++... .|+. ..|..+..++...|++++|...|+++++..|.+
T Consensus 136 ~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 136 AEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred hHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 43 345566666652 3333 344455666777889999999999999998863
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.9e-07 Score=80.79 Aligned_cols=186 Identities=14% Similarity=0.022 Sum_probs=97.4
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI-TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
..+-.....+...|++++|+..|++.... .|+.. .+.. .. ..... .......+.+..+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-~~---~~~~~---------------~~~~~~~~~lg~~ 63 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-TN---VDKNS---------------EISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-HH---SCTTS---------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-hh---hcchh---------------hhhHHHHHHHHHH
Confidence 33444556667777778887777777663 34322 2211 00 00000 0011223346666
Q ss_pred HHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH--HH
Q 038542 157 FAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV--DK 231 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~--~~ 231 (475)
|.+.|++++|...|++.. ..+...|..+...|...|++++|+..|++..+.. +.+..++..+..++...|.. +.
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHH
Confidence 666777777777666553 2355666666677777777777777777766643 33455666666665444332 23
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHH
Q 038542 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLI 288 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li 288 (475)
+...++... ...|....+..+..++...|++++|...|++. ...|+......+.
T Consensus 143 ~~~~~~~~~---~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~~~~~l~ 197 (208)
T 3urz_A 143 LETDYKKLS---SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHC------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHHHHHHHH
T ss_pred HHHHHHHHh---CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 333333322 11222223333444555667777777777765 5566655444433
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=3.7e-07 Score=79.18 Aligned_cols=158 Identities=10% Similarity=-0.023 Sum_probs=101.9
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----ChHHHHHHHHHHHHcCCCCCccHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG----ALEVGKWVESFIEKQMVNRSVGLCN 151 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (475)
++.++..|...|...+++++|++.|++..+.| +...+..+...+.. + ++++|...+....+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 56666667777777777777777777776654 44555555555555 5 6777777777776654 445666
Q ss_pred HHHHHHHh----cCCHHHHHHHHHhcCCCC-----hhHHHHHHHHHHH----cCChHHHHHHHHHHHHcCCCCCHHHHHH
Q 038542 152 ALIDMFAK----CGDVDKALKLFRSMNGRT-----IVSWTSVIAGLAM----HGRGLEAVALFEEMLEAGVPPDDVAFVG 218 (475)
Q Consensus 152 ~li~~y~~----~g~~~~A~~~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 218 (475)
.|..+|.. .+++++|...|++..+.+ ..++..|...|.. .++.++|+..|++..+. .++...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~--~~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL--SRTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT--SCTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc--CCCHHHHHH
Confidence 66666666 667777777777766443 4666777777776 66777777777777665 223334555
Q ss_pred HHHHHhcC-C-----CHHHHHHHHHHhhhh
Q 038542 219 LLSACSHC-G-----LVDKGREYFDSMKND 242 (475)
Q Consensus 219 ll~~~~~~-g-----~~~~a~~~~~~m~~~ 242 (475)
|...|... | +.++|..+|+...+.
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 55555432 2 677777777777663
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-07 Score=83.82 Aligned_cols=163 Identities=7% Similarity=-0.036 Sum_probs=118.7
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHH-HHHH
Q 038542 110 PDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWT-SVIA 186 (475)
Q Consensus 110 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~-~li~ 186 (475)
.+...+..+...+...|++++|...++.+.+.. +.+...+..+...|.+.|++++|...|++... |+..... ....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 344566667777888899999999999888774 33667788888899999999999999988864 3333222 2233
Q ss_pred HHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHH
Q 038542 187 GLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVK 266 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~ 266 (475)
.+...++.++|+..|++..... +.+...+..+..++...|++++|...|..+.+...-..+...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 4667777888888888887763 456677888888888888999998888888874111122567777888888888877
Q ss_pred HHHHHHHh
Q 038542 267 EAHEFIQK 274 (475)
Q Consensus 267 ~A~~~~~~ 274 (475)
+|...+++
T Consensus 273 ~a~~~~r~ 280 (287)
T 3qou_A 273 ALASXYRR 280 (287)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 77776654
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.79 E-value=7.2e-06 Score=74.81 Aligned_cols=227 Identities=9% Similarity=0.023 Sum_probs=166.7
Q ss_pred cCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC--ChHHHHHHHHHHHHcCCCCCccHHHHHHHHH----Hhc--
Q 038542 90 LGLSTDAIDLFRQMQISGVCPD-EITMVTVLSACTDLG--ALEVGKWVESFIEKQMVNRSVGLCNALIDMF----AKC-- 160 (475)
Q Consensus 90 ~g~~~~A~~~~~~m~~~g~~p~-~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y----~~~-- 160 (475)
....++|++++.++... .|+ ...|+.--..+...+ +++++...++.++....+ +..+|+.-...+ .+.
T Consensus 46 ~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 46 EEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccc
Confidence 34446899999888874 454 445666666677777 889999999888887533 555666554444 455
Q ss_pred -CCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC------
Q 038542 161 -GDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGL--EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL------ 228 (475)
Q Consensus 161 -g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~------ 228 (475)
+++++++++++++. .+|..+|+.-.-.+.+.|.++ ++++.++++.+.. +-|...|+.-.....+.+.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~ 201 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNT 201 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhh
Confidence 78889999888875 347788888877888888888 9999999998875 4466667666666666666
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH-HHHHHHhC-CC----CCCHHHHHHHHHHHHhcCCHHHHHH
Q 038542 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE-AHEFIQKM-PI----EANPIIWRTLISACCARGELKLAES 302 (475)
Q Consensus 229 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m-~~----~p~~~~~~~li~~~~~~g~~~~a~~ 302 (475)
++++++.++.+.. -.+-|...|+-+-..+.+.|+..+ +..+..+. .. ..++..+..+...+.+.|+.++|.+
T Consensus 202 ~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 202 IDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 8888888888876 344567788888888888887444 55566665 21 2377888888899999999999999
Q ss_pred HHHHHHh-CCCCCCchHHHHH
Q 038542 303 ITKRLIG-NEPMHESNYVLLS 322 (475)
Q Consensus 303 ~~~~~~~-~~p~~~~~~~~l~ 322 (475)
+++.+.+ .+|.....|...+
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~ 300 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQI 300 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHH
Confidence 9999886 6887766665443
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.78 E-value=4.4e-07 Score=78.44 Aligned_cols=145 Identities=11% Similarity=-0.086 Sum_probs=98.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
+..+...|...|++++|...|++...++...|..+...|...|++++|+..|++..... +.+...+..+..++...|++
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~ 87 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 87 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccH
Confidence 34456677777888888888887777777777777777888888888888887777653 34566677777777777777
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
++|...|+...+. . +.+.... +...| +...| ....|..+..++...|++++|...++++.
T Consensus 88 ~~A~~~~~~al~~-~-~~~~~~~------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 148 (213)
T 1hh8_A 88 DLAIKDLKEALIQ-L-RGNQLID------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT 148 (213)
T ss_dssp HHHHHHHHHHHHT-T-TTCSEEE------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-C-CCccHHH------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 7777777776652 1 1111000 00000 01223 34677788888888899999999999988
Q ss_pred hCCCCC
Q 038542 309 GNEPMH 314 (475)
Q Consensus 309 ~~~p~~ 314 (475)
+..|.+
T Consensus 149 ~~~p~~ 154 (213)
T 1hh8_A 149 SMKSEP 154 (213)
T ss_dssp TTCCSG
T ss_pred HcCccc
Confidence 888865
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.77 E-value=2.1e-07 Score=81.60 Aligned_cols=185 Identities=9% Similarity=-0.070 Sum_probs=131.3
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCC--ccHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-Ch---hHHH
Q 038542 111 DEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRS--VGLCNALIDMFAKCGDVDKALKLFRSMNG--R-TI---VSWT 182 (475)
Q Consensus 111 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~---~~~~ 182 (475)
+...+-.+...+...|++++|...++.+++...... ...+..+..+|.+.|++++|...|+++.+ | +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344555667778999999999999999998643221 34677889999999999999999998753 2 22 2455
Q ss_pred HHHHHHHH------------------cCChHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 038542 183 SVIAGLAM------------------HGRGLEAVALFEEMLEAGVPPDDV-AFVGLLSACSHCGLVDKGREYFDSMKNDF 243 (475)
Q Consensus 183 ~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~~~-t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 243 (475)
.+..++.. .|+.++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 55555554 57899999999999885 35432 2211111 001111111
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++...|+.++|.+.++.+....|.+..
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 12235677889999999999999987 33343 256888999999999999999999999998887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.5e-08 Score=79.74 Aligned_cols=102 Identities=12% Similarity=0.034 Sum_probs=88.4
Q ss_pred CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 244 GIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 244 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
.+.| +...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...|+++++.+|.++..|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 3344 3456777888889999999999999888 4445 68899999999999999999999999999999999999999
Q ss_pred HHHHHHhccChhHHHHHHHHHHhCC
Q 038542 321 LSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+..+|...|++++|.+.+++..+..
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999988643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.75 E-value=3.3e-07 Score=79.22 Aligned_cols=126 Identities=10% Similarity=-0.002 Sum_probs=103.5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+..+...+...|++++|...|+... .|+...+..+...|.+.|++++|.+.|++. ...| +...|..+...+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 34456667777888888888887653 457778888888888888888888888776 2233 6788899999999
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCC----------------chHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 293 ARGELKLAESITKRLIGNEPMHE----------------SNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~----------------~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
..|++++|...++++.+..|.+. ..+..++.+|...|++++|.+.++...+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 99999999999999999888777 789999999999999999999999988653
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.4e-07 Score=79.12 Aligned_cols=155 Identities=12% Similarity=0.015 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH-Hhc
Q 038542 150 CNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA-CSH 225 (475)
Q Consensus 150 ~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~-~~~ 225 (475)
...+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++..... |+...+..+... +..
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~ 86 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQ 86 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHh
Confidence 44555666777777777777776653 245667777777777777777777777665532 333322221111 111
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 038542 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN---PIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~~g~~~~a~ 301 (475)
.+...+|...++...+. .+.+...+..+..++...|++++|...|+++ ...|+ ...+..+...+...|+.++|.
T Consensus 87 ~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 87 QAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred hcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 12222356666666542 2224566777777777777777777777766 44443 456777777777778777777
Q ss_pred HHHHHHH
Q 038542 302 SITKRLI 308 (475)
Q Consensus 302 ~~~~~~~ 308 (475)
..+++.+
T Consensus 165 ~~y~~al 171 (176)
T 2r5s_A 165 SKYRRQL 171 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.3e-08 Score=79.74 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=84.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..+..+..+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4456777788888999999999999887 3344 7888999999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHhC
Q 038542 326 AKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~ 344 (475)
...|++++|.+.++...+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999888753
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.71 E-value=2.3e-06 Score=78.17 Aligned_cols=160 Identities=8% Similarity=-0.088 Sum_probs=113.1
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcC-CCCCH----HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHH
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAG-VPPDD----VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGC 254 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~ 254 (475)
.+..+...|++++|..++++..+.. ..|+. ..+..+...+...+++++|...++.......-.++ ...++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 3566777888888888888877642 12221 12334666677777888888888887762111222 235788
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-----C--CC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CCchHH
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-----P--IE-A-NPIIWRTLISACCARGELKLAESITKRLIGNEPM------HESNYV 319 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-----~--~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~------~~~~~~ 319 (475)
+...|...|++++|...|+++ . .. + ...+|..+...|...|++++|...++++++..+. -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 888888888888888887776 1 11 1 2347888999999999999999999998765422 145788
Q ss_pred HHHHHHHhccC-hhHHHHHHHHHHh
Q 038542 320 LLSHIYAKLLR-WEKKTKIREVMDK 343 (475)
Q Consensus 320 ~l~~~~~~~g~-~~~a~~~~~~m~~ 343 (475)
.++.+|.+.|+ +++|.+.+++...
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 99999999995 6999988877653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-07 Score=74.01 Aligned_cols=107 Identities=8% Similarity=-0.055 Sum_probs=68.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+......+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4455556666666666666666666542 2334556666666666666666666666665 2333 5667777777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
..|++++|.+.|+++++++|.+..++..|.+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 7777777777777777777777666655544
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.70 E-value=5.3e-07 Score=82.47 Aligned_cols=163 Identities=9% Similarity=-0.071 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcC--CCCC--hh
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDD-----VAFVGLLSACSHCGLVDKGREYFDSMKNDFG--IIPK--IE 250 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~--~~p~--~~ 250 (475)
.+...+..+...|++++|.+.+.+..+.....+. ..+..+...+...|++++|...++...+... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4445667778888888888888877764322111 2234455667788899999988887764211 1111 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC------CC
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-------PIEA--NPIIWRTLISACCARGELKLAESITKRLIGNEPM------HE 315 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~------~~ 315 (475)
.|+.+...|...|++++|...|++. +..+ ...+|..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888888899999999998888776 2111 1257888999999999999999999998765321 14
Q ss_pred chHHHHHHHHHhccChhHH-HHHHHHHH
Q 038542 316 SNYVLLSHIYAKLLRWEKK-TKIREVMD 342 (475)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 342 (475)
.+|..++.+|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5788899999999999999 77676654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.68 E-value=3.9e-07 Score=75.05 Aligned_cols=127 Identities=9% Similarity=-0.015 Sum_probs=89.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+..+...+...|++++|...|+...+. .+.+...+..+...+...|++++|...+++. ...| +...|..+...+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3445555666666666666666666542 2234556666666777777777777777665 2223 5677888888899
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHHHH--HHHHhccChhHHHHHHHHHHh
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVLLS--HIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~--~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..|++++|...++++.+..|.+...+..+. ..+...|++++|.+.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 999999999999999999888877774444 447788999999998877643
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.6e-06 Score=76.85 Aligned_cols=213 Identities=10% Similarity=0.142 Sum_probs=166.8
Q ss_pred ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC--CHHHHHHHHHhcCC---CChhHHHHHHHHH----HHc---CCh
Q 038542 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG--DVDKALKLFRSMNG---RTIVSWTSVIAGL----AMH---GRG 194 (475)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~----~~~---g~~ 194 (475)
.-++|....+.++.... .+..+|+.--......| +++++++.++.+.. ++..+|+.--..+ ... +++
T Consensus 48 ~s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 48 YSERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp CSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CCHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCH
Confidence 34688999999988753 35667888888888888 99999999998763 4567787655555 555 789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH--HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC------HH
Q 038542 195 LEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD--KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR------VK 266 (475)
Q Consensus 195 ~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------~~ 266 (475)
++++++++++.+.. +-|...|..-.-.+.+.|.++ +++++++.+.+. -+-|...|+.-..++.+.|. ++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccchhhhHH
Confidence 99999999999874 456777777777777788887 999999999974 33455667666666777776 88
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhCC---CCCCchHHHHHHHHHhccChhHHHHHHHH
Q 038542 267 EAHEFIQKM-PIEA-NPIIWRTLISACCARGELKL-AESITKRLIGNE---PMHESNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 267 ~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~-a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
++++.++++ ...| |...|+-+...+...|+... ...+..++.+.+ |.++.++..++.+|.+.|+.++|.++++.
T Consensus 204 eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~ 283 (306)
T 3dra_A 204 EELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDL 283 (306)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Confidence 999998877 3344 88899999888888887444 556777776655 77888899999999999999999999999
Q ss_pred HHh
Q 038542 341 MDK 343 (475)
Q Consensus 341 m~~ 343 (475)
+.+
T Consensus 284 l~~ 286 (306)
T 3dra_A 284 LKS 286 (306)
T ss_dssp HHH
T ss_pred HHh
Confidence 875
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.67 E-value=8e-06 Score=74.52 Aligned_cols=203 Identities=8% Similarity=-0.012 Sum_probs=124.5
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhH---HHHHHHHHHHcCChhHHHHHHHHHHHCCC
Q 038542 32 VHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVS---WSAMIGGYARLGLSTDAIDLFRQMQISGV 108 (475)
Q Consensus 32 ~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 108 (475)
.+..+.+-...|+..+...+...+.- .++ .+|..-...+... +...+..+...|++++|.+++++......
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~---~~~---~~~~~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~ 106 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQI---PII---HFYEVLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE 106 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTC---CTH---HHHHTTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCc---CHH---HHhCCCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhcccc
Confidence 34444443346777776666665533 222 2333333333333 33447788899999999999999887421
Q ss_pred -CCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-----cHHHHHHHHHHhcCCHHHHHHHHHhcCC---
Q 038542 109 -CPDEI----TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV-----GLCNALIDMFAKCGDVDKALKLFRSMNG--- 175 (475)
Q Consensus 109 -~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~li~~y~~~g~~~~A~~~~~~~~~--- 175 (475)
.|+.. .+..+...+...+++++|...+..+.+.....+. .+++.+...|...|++++|...|++..+
T Consensus 107 ~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 107 YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 22221 2234555567777889999999888874333222 2577788888888888888887776541
Q ss_pred ---CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhcCCC-HHHHHHHHHHhh
Q 038542 176 ---RT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEA----GVPPD-DVAFVGLLSACSHCGL-VDKGREYFDSMK 240 (475)
Q Consensus 176 ---~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~ll~~~~~~g~-~~~a~~~~~~m~ 240 (475)
.+ ..+|..+...|.+.|++++|+..+++..+. +..+. ..+|..+..++...|+ .++|...++...
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 11 235666777777777777777777766542 21222 4566666667777773 467766666554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.67 E-value=3.7e-07 Score=70.93 Aligned_cols=114 Identities=20% Similarity=0.194 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PI-EANPIIWRTLISAC 291 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~-~p~~~~~~~li~~~ 291 (475)
..+..+...+...|++++|..+++.+.+. .+.+...+..+...+.+.|++++|...++++ .. ..+..+|..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 44555556666666666666666666542 2234555666666666777777777666665 22 23567777888888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhcc
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLL 329 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 329 (475)
...|++++|...++++.+..|.++..+..+..++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88888888888888888888888777777777665543
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.9e-07 Score=73.49 Aligned_cols=100 Identities=13% Similarity=0.114 Sum_probs=89.4
Q ss_pred CCCC-hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHH
Q 038542 245 IIPK-IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 245 ~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
+.|+ ...+......|.+.|++++|.+.|++. ...| +...|..+..++...|++++|+..++++++.+|.+..+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3443 356777889999999999999999987 4445 788999999999999999999999999999999999999999
Q ss_pred HHHHHhccChhHHHHHHHHHHhC
Q 038542 322 SHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 322 ~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+.+|...|++++|.+.+++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999988763
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=4.3e-07 Score=71.20 Aligned_cols=118 Identities=9% Similarity=-0.039 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038542 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISA 290 (475)
Q Consensus 213 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 290 (475)
...+..+...+...|++++|...++..... .+.+...+..+...+...|++++|.+.+++. ...| +...|..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence 345555666666666677776666666552 2334556666667777777777777777665 2223 56778888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChh
Q 038542 291 CCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 332 (475)
+...|++++|...++++.+..|.+...+..+..++...|+++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 888999999999999998888888888888888888877753
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.64 E-value=9.3e-08 Score=87.00 Aligned_cols=187 Identities=11% Similarity=-0.033 Sum_probs=103.2
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
..+..+...|.+.|++++|...|++.. ..+...|..+...|.+.|++++|+..+++..+.. +.+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 344455555556666666666665543 2245556666666666666666666666665542 234455666666666
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCCh-hHHHHHHH---HHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFGIIPKI-EHYGCMVD---MLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~---~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a 300 (475)
..|++++|...|+...+. .|+. ..+...+. ...+...+.. .......++......+ ..+ ..|+.++|
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~i~~~l-~~l-~~~~~~~A 154 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS----IEERRIHQESELHSYL-TRL-IAAERERE 154 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHHHH-HHH-HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHHHHHH-HHH-HHHHHHHH
Confidence 666666666666665542 1110 01111111 1111111111 1122223333333333 222 26888889
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhc-cChhHHHHHHHHHHhC
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKL-LRWEKKTKIREVMDKR 344 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~~ 344 (475)
.+.++++.+.+|.+......+...+.+. +.++++.++|....+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888888887766666666666666 6788899998877653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-07 Score=71.59 Aligned_cols=115 Identities=7% Similarity=-0.050 Sum_probs=71.5
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISAC 291 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 291 (475)
..+..+...+...|++++|...|+...+ -.+.+...+..+...|...|++++|.+.+++. ...| +...|..+...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 3444455555555555555555555443 11223445555555555555555555555554 1222 566777777888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
...|++++|.+.++++.+..|.+...+..+..++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888777777777777766553
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-06 Score=80.10 Aligned_cols=128 Identities=10% Similarity=0.018 Sum_probs=63.7
Q ss_pred hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHH------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-C---
Q 038542 77 SVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEI------TMVTVLSACTDLGALEVGKWVESFIEKQMVNR-S--- 146 (475)
Q Consensus 77 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~--- 146 (475)
...+...+..+...|++++|++.+.+..+.... +.. .+..+...+...|++++|...+....+..... +
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 153 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQ 153 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHH
Confidence 345556677777888888888888777664221 111 12223333445556666666665555322111 1
Q ss_pred -ccHHHHHHHHHHhcCCHHHHHHHHHhcC-----CCC-----hhHHHHHHHHHHHcCChHHHHHHHHHHH
Q 038542 147 -VGLCNALIDMFAKCGDVDKALKLFRSMN-----GRT-----IVSWTSVIAGLAMHGRGLEAVALFEEML 205 (475)
Q Consensus 147 -~~~~~~li~~y~~~g~~~~A~~~~~~~~-----~~~-----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 205 (475)
..+++.+...|...|++++|...|++.. .++ ..+|+.+...|...|++++|+..+++..
T Consensus 154 ~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 154 NLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 2244455555555555555555554432 011 1244444444555555555555554443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.61 E-value=4.7e-07 Score=72.89 Aligned_cols=97 Identities=8% Similarity=-0.085 Sum_probs=83.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..+..+..+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666777888899999999999887 3344 7888899999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHhC
Q 038542 326 AKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~ 344 (475)
...|++++|.+.++...+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999888753
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.60 E-value=2.8e-07 Score=85.05 Aligned_cols=197 Identities=10% Similarity=-0.029 Sum_probs=148.7
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHH
Q 038542 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEE 203 (475)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~ 203 (475)
..|++++|..++++..+.... . .+...|+++.|...|.+. ...|...|++++|...|.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~---------~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~ 61 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S---------FMKWKPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQ 61 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C---------SSSCSCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c---------ccCCCCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHH
Confidence 457788999999888765221 1 011158899998888764 5678899999999999998
Q ss_pred HHHc----CCCCC-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHh
Q 038542 204 MLEA----GVPPD-DVAFVGLLSACSHCGLVDKGREYFDSMKNDF---GIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQK 274 (475)
Q Consensus 204 m~~~----g~~p~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~ 274 (475)
..+. +-.+. ..+|..+...|...|++++|...|+...+-+ |-.+ ...++..+...|.. |++++|...|++
T Consensus 62 al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~ 140 (307)
T 2ifu_A 62 EAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQ 140 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHH
Confidence 7653 21111 3578888999999999999999998876532 1111 13577888888988 999999999988
Q ss_pred C-CC---CC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------chHHHHHHHHHhccChhHHHHHHHH
Q 038542 275 M-PI---EA----NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE------SNYVLLSHIYAKLLRWEKKTKIREV 340 (475)
Q Consensus 275 m-~~---~p----~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~a~~~~~~ 340 (475)
. .+ .. ...++..+...+...|++++|...++++++..|.+. ..+..++.++...|++++|...+++
T Consensus 141 Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~ 220 (307)
T 2ifu_A 141 AAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRE 220 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7 11 11 146788899999999999999999999988654332 2566777888889999999999988
Q ss_pred HH
Q 038542 341 MD 342 (475)
Q Consensus 341 m~ 342 (475)
..
T Consensus 221 al 222 (307)
T 2ifu_A 221 SY 222 (307)
T ss_dssp HT
T ss_pred Hh
Confidence 76
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.57 E-value=4.5e-07 Score=84.75 Aligned_cols=94 Identities=14% Similarity=0.035 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...|+++++..|.+..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 356777888888888888888888877 3334 68889999999999999999999999999999999999999999999
Q ss_pred hccChhHH-HHHHHHHH
Q 038542 327 KLLRWEKK-TKIREVMD 342 (475)
Q Consensus 327 ~~g~~~~a-~~~~~~m~ 342 (475)
..|+++++ ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44566654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.53 E-value=3.8e-05 Score=75.47 Aligned_cols=354 Identities=9% Similarity=-0.059 Sum_probs=206.7
Q ss_pred chHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccC------CCChhHHHHHH
Q 038542 11 FTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMS------ERDSVSWSAMI 84 (475)
Q Consensus 11 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~------~~~~~~~~~li 84 (475)
..|...+..+-. ++++.+.++|+..+.. .|+...|...+....+.+...+....+|+... ..+...|...+
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi 92 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYI 92 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 356666665544 8899999999998875 57888888888877776623444556665533 23667888888
Q ss_pred HHHH----HcCChhHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHhcc--------------CChHHHHHHHHHHHHcCCC
Q 038542 85 GGYA----RLGLSTDAIDLFRQMQISGVCPD-EI-TMVTVLSACTDL--------------GALEVGKWVESFIEKQMVN 144 (475)
Q Consensus 85 ~~~~----~~g~~~~A~~~~~~m~~~g~~p~-~~-t~~~ll~~~~~~--------------~~~~~a~~~~~~~~~~~~~ 144 (475)
..+. .+++.+.+.++|++.... ++. .. .|..... +... +.+..|..++..+...-..
T Consensus 93 ~f~~~~~~~~~~~~~vR~iy~rAL~~--P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~ 169 (493)
T 2uy1_A 93 EEEGKIEDEQTRIEKIRNGYMRALQT--PMGSLSELWKDFEN-FELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG 169 (493)
T ss_dssp HHTSSCSSHHHHHHHHHHHHHHHHTS--CCTTHHHHHHHHHH-HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhchhhhHHHHHHHHHHHHHHhC--hhhhHHHHHHHHHH-HHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh
Confidence 7654 346778899999999873 332 22 2222221 1111 1223344444444432111
Q ss_pred CCccHHHHHHHHHHhcC--C-----HHHHHHHHHhcCC---CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHH
Q 038542 145 RSVGLCNALIDMFAKCG--D-----VDKALKLFRSMNG---RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDV 214 (475)
Q Consensus 145 ~~~~~~~~li~~y~~~g--~-----~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 214 (475)
.+...|...++.-...+ - .+.+..+|+++.. .+...|-..+.-+.+.|+.++|..+|++.... |+..
T Consensus 170 ~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~ 246 (493)
T 2uy1_A 170 WSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGM 246 (493)
T ss_dssp CSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSS
T ss_pred ccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcH
Confidence 13335555555432211 1 3345667777653 35677888888888899999999999999887 4433
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhc---C-----CCC---ChhHHHHHHHHHHHcCCHHHHHHHHHhCCCC-CCHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDF---G-----IIP---KIEHYGCMVDMLCRSGRVKEAHEFIQKMPIE-ANPI 282 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~-----~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-p~~~ 282 (475)
.+.. +|......++. ++.+...+ . ..+ ....|...+..+.+.+.++.|..+|+++... .+..
T Consensus 247 ~l~~---~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~~~~~ 320 (493)
T 2uy1_A 247 FLSL---YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIELGNEGVGPH 320 (493)
T ss_dssp HHHH---HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSCCCHH
T ss_pred HHHH---HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCCCChH
Confidence 2221 12211111111 22222211 0 001 1245666777777888899999999988211 2344
Q ss_pred HHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEE
Q 038542 283 IWRTLISACCA-RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEI 361 (475)
Q Consensus 283 ~~~~li~~~~~-~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~ 361 (475)
+|......-.. .++.+.|..+|+.+++..|+++..+...++...+.|+.+.|..+++...+. ..-|..+
T Consensus 321 v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k~------~~lw~~~---- 390 (493)
T 2uy1_A 321 VFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRLEKT------SRMWDSM---- 390 (493)
T ss_dssp HHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCCB------HHHHHHH----
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------HHHHHHH----
Confidence 45432222222 346999999999999888887777777788888899999999999886210 0011110
Q ss_pred EEEEeCCCCCccHHHHHHHHHHHHHHHHHcC
Q 038542 362 YEFVCGDKSHHQSKEIYEMLDEMGRKMKKAG 392 (475)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g 392 (475)
+.=...||..+.+-..+++....++..+
T Consensus 391 ---~~fE~~~G~~~~~r~v~~~~~~~~~~~~ 418 (493)
T 2uy1_A 391 ---IEYEFMVGSMELFRELVDQKMDAIKADA 418 (493)
T ss_dssp ---HHHHHHHSCHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHCCCHHHHHHHHHHHHHHhcccc
Confidence 0001234555666666777666666443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.1e-06 Score=75.21 Aligned_cols=150 Identities=15% Similarity=0.038 Sum_probs=71.1
Q ss_pred hcCCHHHHHH---HHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhcCCCHH
Q 038542 159 KCGDVDKALK---LFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEA----GVPP-DDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 159 ~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~ll~~~~~~g~~~ 230 (475)
..|++++|.+ .+..-+.....++..+...|...|++++|...+++.... +..| ...++..+...+...|+++
T Consensus 4 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 83 (203)
T 3gw4_A 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD 83 (203)
T ss_dssp ---CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence 3456666666 443322223455555666666666666666666665441 1111 2234555556666666666
Q ss_pred HHHHHHHHhhhhcCCCC-----ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCH
Q 038542 231 KGREYFDSMKNDFGIIP-----KIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEAN----PIIWRTLISACCARGEL 297 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~----~~~~~~li~~~~~~g~~ 297 (475)
+|...+++......-.+ ....+..+...+...|++++|...+++. ...++ ..++..+...+...|++
T Consensus 84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 163 (203)
T 3gw4_A 84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163 (203)
T ss_dssp HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence 66666655543211111 1223444455555555555555555443 00011 12234444555555555
Q ss_pred HHHHHHHHHHH
Q 038542 298 KLAESITKRLI 308 (475)
Q Consensus 298 ~~a~~~~~~~~ 308 (475)
++|...+++..
T Consensus 164 ~~A~~~~~~al 174 (203)
T 3gw4_A 164 LEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 55555555544
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.52 E-value=4.2e-05 Score=75.12 Aligned_cols=321 Identities=9% Similarity=-0.049 Sum_probs=194.9
Q ss_pred CCCcchHHHHHHHHHcCCC-cHHHHHHHHHHHHh-cC-CCChhHHHHHHHHHHh----CCCCHHHHHHHHhccCC-C--C
Q 038542 7 SPNKFTYPFVLKACAGIGD-LNLGKSVHGAVLKF-QF-GDDIHVQNTLVHMYGS----CEGGIELGRKVFDEMSE-R--D 76 (475)
Q Consensus 7 ~p~~~t~~~ll~~~~~~~~-~~~a~~~~~~~~~~-g~-~~~~~~~~~li~~~~~----~gg~~~~A~~~f~~~~~-~--~ 76 (475)
.|+...|..-+.-..+.++ .+....+|+.++.. |. ..+..+|...+..+.. .+ +++.+.++|++... | +
T Consensus 44 ~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~-~~~~vR~iy~rAL~~P~~~ 122 (493)
T 2uy1_A 44 SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQT-RIEKIRNGYMRALQTPMGS 122 (493)
T ss_dssp CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHH-HHHHHHHHHHHHHTSCCTT
T ss_pred CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhH-HHHHHHHHHHHHHhChhhh
Confidence 4788888887776666553 45677888888775 53 3466788888876543 34 78899999998854 2 2
Q ss_pred h-hHHHHHHHHHHHc-------------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CC-----hHHHHHHH
Q 038542 77 S-VSWSAMIGGYARL-------------GLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDL--GA-----LEVGKWVE 135 (475)
Q Consensus 77 ~-~~~~~li~~~~~~-------------g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~--~~-----~~~a~~~~ 135 (475)
. ..|......-... +.+..|..++.++...--..+...|...+..-... +- .+.+..++
T Consensus 123 ~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 123 LSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 1 2344333221111 12233444444444210001223444444432221 11 34567788
Q ss_pred HHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC-C-ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-----
Q 038542 136 SFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG-R-TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG----- 208 (475)
Q Consensus 136 ~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~-~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----- 208 (475)
+.++... +.+..+|...+..+.+.|+.++|..+|++... | +...|. .|+.....++. ++.+.+.-
T Consensus 203 e~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~ 274 (493)
T 2uy1_A 203 NYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEA 274 (493)
T ss_dssp HHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhcc
Confidence 8888764 45677888888889999999999999986532 2 333333 23332222222 23322210
Q ss_pred ----CCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC--CCC
Q 038542 209 ----VPP---DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG-RVKEAHEFIQKM--PIE 278 (475)
Q Consensus 209 ----~~p---~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m--~~~ 278 (475)
..+ ....|...+....+.+..+.|..+|+.. .. . ..+...|......-.+.+ +.+.|..+|+.. ...
T Consensus 275 ~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 275 ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 011 1234555666666678899999999988 42 1 234445544333333334 699999999887 222
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.++..|...+.-....|+.+.|..+|+++ +.....+...+..-...|+.+.+..++++..+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 24566777888888899999999999997 23455677777777788999999998888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.52 E-value=8.8e-07 Score=74.13 Aligned_cols=127 Identities=9% Similarity=0.063 Sum_probs=95.6
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH-HHHcCCH--
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM-LCRSGRV-- 265 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~g~~-- 265 (475)
...|++++|+..+++..... +.+...+..+...|...|++++|...|+...+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34677888888888877753 456677888888888889999998888888763 23356677777777 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 266 KEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 266 ~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
++|...++++ ...| +...|..+...+...|++++|...++++++..|.+....
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 152 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINRT 152 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCHH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccHH
Confidence 8898888877 3334 577888888999999999999999999999998875543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00011 Score=67.95 Aligned_cols=235 Identities=12% Similarity=0.032 Sum_probs=157.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCccHHHHHHHHH
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALIDMF 157 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y 157 (475)
++.+-....+.+..++|++++.++... .| +...|+.--..+...+ .++++..+++.+++... -+..+|+.-...+
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP-Kny~aW~hR~wlL 133 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL-KSYQVWHHRLLLL 133 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC-CCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence 444444445556667899999999875 45 4455666666666677 58899999999887753 3666777766666
Q ss_pred Hhc-C-CHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 158 AKC-G-DVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGL--------EAVALFEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 158 ~~~-g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
.+. + ++++++++++++.+. |..+|+--.-.+.+.|.++ ++++.++++.+.. +-|...|+.....+.
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRV 212 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHT
T ss_pred HHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 666 6 788999999988754 5577776665555555555 8999999998875 456777777777777
Q ss_pred cCCC-------HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCH--------------------HHHHHHHHhC-C
Q 038542 225 HCGL-------VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV--------------------KEAHEFIQKM-P 276 (475)
Q Consensus 225 ~~g~-------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m-~ 276 (475)
+.+. ++++++.++.+.. -.+-|...|+-+-..+.+.|+. .+..++..++ +
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPS 290 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC
T ss_pred hccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHh
Confidence 7775 6788888887775 3344666777777777766653 3344444444 1
Q ss_pred C-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hCCCCCCchHHH
Q 038542 277 I-------EANPIIWRTLISACCARGELKLAESITKRLI-GNEPMHESNYVL 320 (475)
Q Consensus 277 ~-------~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~-~~~p~~~~~~~~ 320 (475)
. .+++..+..|...|...|+.++|.++++.+. +.+|.....|..
T Consensus 291 ~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~ 342 (349)
T 3q7a_A 291 DPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEF 342 (349)
T ss_dssp -CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred cccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHH
Confidence 1 2466677777777777788888888887775 556665444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.4e-07 Score=75.31 Aligned_cols=102 Identities=12% Similarity=-0.086 Sum_probs=72.1
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISAC 291 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 291 (475)
..+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|...|++. ...| +...|..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 34555666677777777777777776652 2335566667777777777777777777766 3333 566777788888
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 292 CARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
...|++++|...++++++..|.++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 88888888888888888888776654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.49 E-value=9.4e-07 Score=86.73 Aligned_cols=119 Identities=9% Similarity=-0.004 Sum_probs=92.4
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGEL 297 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 297 (475)
...+.+.|++++|.+.+++..+. .+.+...|..+..+|.+.|++++|.+.+++. ...| +...|..+..++...|++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 34456677888888888877763 2334677888888888888888888888877 3444 678899999999999999
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHH--HHhccChhHHHHHHHH
Q 038542 298 KLAESITKRLIGNEPMHESNYVLLSHI--YAKLLRWEKKTKIREV 340 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~a~~~~~~ 340 (475)
++|.+.++++++..|.+...+..+..+ +.+.|++++|.+.+++
T Consensus 91 ~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 91 RAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 999999999999999998888888877 8899999999999874
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-07 Score=78.00 Aligned_cols=120 Identities=4% Similarity=0.027 Sum_probs=100.5
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH-HHhcCCH--H
Q 038542 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISA-CCARGEL--K 298 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~-~~~~g~~--~ 298 (475)
...|++++|...++...+. .+.+...+..+...|...|++++|...|++. ...| +...|..+... +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 4568888999999888763 3456788999999999999999999999987 3333 67788888888 7789998 9
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 299 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+|...++++++.+|.+...+..++.+|...|++++|...++...+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999988653
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.9e-07 Score=70.10 Aligned_cols=96 Identities=8% Similarity=0.002 Sum_probs=77.2
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|...++++++.+|.++..|..+..+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345666677778888888888888776 3334 67788888888888889999999999888888888888888888898
Q ss_pred hccChhHHHHHHHHHHhC
Q 038542 327 KLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 327 ~~g~~~~a~~~~~~m~~~ 344 (475)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999998888877653
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-06 Score=68.99 Aligned_cols=127 Identities=7% Similarity=-0.062 Sum_probs=86.8
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..|..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...++...+. .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 455666677777777777777777776653 345667777777777788888888888777763 23456677777778
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRT--LISACCARGELKLAESITKRLI 308 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~--li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+...|++++|...|++. ...| +...+.. +...+...|++++|...+.+..
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888776 2223 4444433 3334667788888888877654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.2e-06 Score=74.82 Aligned_cols=112 Identities=12% Similarity=0.026 Sum_probs=55.8
Q ss_pred CHHHHHH---HHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHH
Q 038542 61 GIELGRK---VFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS----GVCP-DEITMVTVLSACTDLGALEVGK 132 (475)
Q Consensus 61 ~~~~A~~---~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~t~~~ll~~~~~~~~~~~a~ 132 (475)
++++|.+ ++..-+.....+|+.+...+...|++++|+..+++.... +..| ...++..+...+...|++++|.
T Consensus 7 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 86 (203)
T 3gw4_A 7 DYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAAR 86 (203)
T ss_dssp CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666666 444433334556666666666666666666666665541 1111 1234444445555556666665
Q ss_pred HHHHHHHHc----CCCC--CccHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 133 WVESFIEKQ----MVNR--SVGLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 133 ~~~~~~~~~----~~~~--~~~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
..+....+. +-.+ ....+..+...|...|++++|...+++
T Consensus 87 ~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 87 RCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 555554432 1010 122344444555555555555555444
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.46 E-value=6.1e-07 Score=72.95 Aligned_cols=98 Identities=5% Similarity=-0.064 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+..+...+.+.|++++|...|+..... -+.+...|..+..+|.+.|++++|...|++. .+.| ++..|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 4455555666666666666666666542 2334556666666666666666666666665 2333 4566677777777
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC
Q 038542 293 ARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
..|++++|...|+++++..|++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 7777777777777777777654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=3.9e-06 Score=64.22 Aligned_cols=109 Identities=10% Similarity=-0.042 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISAC 291 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~ 291 (475)
..+..+...+...|++++|...++..... .+.+...+..+...+.+.|++++|...+++. ...| +...|..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 34444555555566666666666655542 2224455555666666666666666666555 2223 466677777777
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 292 CARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 292 ~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
...|++++|...++++.+..|.++..+..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNM 115 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 777777777777777777777766555554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.8e-06 Score=73.83 Aligned_cols=69 Identities=16% Similarity=0.018 Sum_probs=33.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC---CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHH
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM---PIEAN--PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m---~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
+..+..++.+.|++++|++.|++. +..|. ...+.....++...|+.++|..+|+++...+|. ...+..|
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 344444444455555555544444 11121 223444555555666666666666666666665 4444433
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.44 E-value=4.9e-06 Score=74.32 Aligned_cols=185 Identities=8% Similarity=-0.086 Sum_probs=101.9
Q ss_pred HcCChhHHHHHHHHHHHCCCCC-CHHHHHHH-------HHHHhccCChHHHHHHHHHHHHcCCCCC--------------
Q 038542 89 RLGLSTDAIDLFRQMQISGVCP-DEITMVTV-------LSACTDLGALEVGKWVESFIEKQMVNRS-------------- 146 (475)
Q Consensus 89 ~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~l-------l~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------- 146 (475)
+.++...|.+.|.+..+. .| ....|..+ ...+.+.+...++...+....+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 567777777777777764 34 34455555 2333333333333333332222 2221
Q ss_pred --------ccHHHHHHHHHHhcCCHHHHHHHHHhcCC--CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--HH
Q 038542 147 --------VGLCNALIDMFAKCGDVDKALKLFRSMNG--RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD--DV 214 (475)
Q Consensus 147 --------~~~~~~li~~y~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ 214 (475)
..+.-.+..++...|++++|.++|+.+.. |+......+...+.+.+++++|+..|+...... .|. ..
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~ 172 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGA 172 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHH
Confidence 11233455666677777777777777653 222244445556667777777777776443321 111 22
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC-CC--hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGII-PK--IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN 280 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~-p~--~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~ 280 (475)
.+..+..++...|++++|+..|++... |.. |. .........++.+.|+.++|...|+++ ...|+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~--g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEAND--SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHT--STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhc--CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 455566677777777777777777664 322 43 234555566677777777777777766 33444
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=8.1e-07 Score=69.31 Aligned_cols=94 Identities=11% Similarity=-0.095 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 328 (475)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..+..+..+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556677888999999999999887 4444 7888999999999999999999999999999999999999999999999
Q ss_pred cChhHHHHHHHHHHhC
Q 038542 329 LRWEKKTKIREVMDKR 344 (475)
Q Consensus 329 g~~~~a~~~~~~m~~~ 344 (475)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999888753
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.9e-06 Score=65.36 Aligned_cols=98 Identities=9% Similarity=0.013 Sum_probs=77.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC--CCchHHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPM--HESNYVLLSH 323 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~--~~~~~~~l~~ 323 (475)
+...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|. +...+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 3455666777777788888888777776 2223 5677888888888888999999999988888888 8888888888
Q ss_pred HHHhc-cChhHHHHHHHHHHhCC
Q 038542 324 IYAKL-LRWEKKTKIREVMDKRG 345 (475)
Q Consensus 324 ~~~~~-g~~~~a~~~~~~m~~~~ 345 (475)
+|... |++++|.+.++...+..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888 99999988888877644
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.9e-06 Score=72.50 Aligned_cols=170 Identities=12% Similarity=-0.063 Sum_probs=101.4
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 153 LIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 153 li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
.+......|++++|.+.|+..... ....|..+...+...|++++|+..|++..... |+...+... ..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~ 79 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------IL 79 (198)
T ss_dssp ------------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HH
T ss_pred hhhhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hH
Confidence 344455566677766666543321 33556667777778888888888888777642 221100000 00
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
+.- ... .....+..+..+|.+.|++++|...+++. ...| +...|..+..++...|++++|...++++
T Consensus 80 ~~~---~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 80 LDK---KKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHH---HHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHH---HHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 000 000 01245667777788888888888888776 2233 6788888999999999999999999999
Q ss_pred HhCCCCCCchHHHHHHHHHhccChhHHH-HHHHHHHh
Q 038542 308 IGNEPMHESNYVLLSHIYAKLLRWEKKT-KIREVMDK 343 (475)
Q Consensus 308 ~~~~p~~~~~~~~l~~~~~~~g~~~~a~-~~~~~m~~ 343 (475)
++..|.+...+..+..++...++.+++. ..+..|-.
T Consensus 149 l~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 149 ASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred HHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999999999999998888887776 44544443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.8e-06 Score=77.17 Aligned_cols=190 Identities=8% Similarity=-0.057 Sum_probs=109.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHH
Q 038542 112 EITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGL 188 (475)
Q Consensus 112 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 188 (475)
...+..+...+...|++++|...+..+++.. +.+...+..+..+|.+.|++++|...+++..+ .+...|..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3444555555666666666666666666553 22556667777777777777777777776653 2556777777888
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDD-VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
...|++++|+..|++..+.. |+. ..+...+.... ....+.. +...... ...++......+... ..|+.++
T Consensus 83 ~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~-~~~~~~~i~~~l~~l--~~~~~~~ 153 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSAL---RIAKKKR-WNSIEER-RIHQESELHSYLTRL--IAAERER 153 (281)
T ss_dssp HHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHH---HHHHHHH-HHHHHHT-CCCCCCHHHHHHHHH--HHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHH---HHHHHHH-HHHHHHH-HHhhhHHHHHHHHHH--HHHHHHH
Confidence 88888888888888776532 211 01111111111 1111112 2222221 444455544444333 2688889
Q ss_pred HHHHHHhC-CCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHhCC
Q 038542 268 AHEFIQKM-PIEANPI-IWRTLISACCAR-GELKLAESITKRLIGNE 311 (475)
Q Consensus 268 A~~~~~~m-~~~p~~~-~~~~li~~~~~~-g~~~~a~~~~~~~~~~~ 311 (475)
|.+.++.. ...|+.. ....+...+... +.+++|.++|+++.+..
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~ 200 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR 200 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 98888776 5566543 334444444444 66888999998876643
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.9e-06 Score=67.46 Aligned_cols=108 Identities=10% Similarity=-0.120 Sum_probs=66.4
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|...+++. ...| +...|..+..++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 3444555555666666666666655542 2234455666666666666666666666655 2233 4667777777777
Q ss_pred hcCCHHHHHHHHHHHHhCC------CCCCchHHHHHHH
Q 038542 293 ARGELKLAESITKRLIGNE------PMHESNYVLLSHI 324 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 324 (475)
..|++++|...++++++.+ |.+......+..+
T Consensus 84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 7888888888888877777 6555554444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.40 E-value=1.3e-06 Score=72.15 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=52.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHh
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAK 327 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 327 (475)
..+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++.+|.+...|..+..+|..
T Consensus 12 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 91 (164)
T 3sz7_A 12 DKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFD 91 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 34444555555555555555555554 2222 455555555555666666666666666666666555556666666666
Q ss_pred ccChhHHHHHHHHHHh
Q 038542 328 LLRWEKKTKIREVMDK 343 (475)
Q Consensus 328 ~g~~~~a~~~~~~m~~ 343 (475)
.|++++|.+.+++..+
T Consensus 92 ~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 92 MADYKGAKEAYEKGIE 107 (164)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 6666666666555544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.40 E-value=1.7e-06 Score=69.56 Aligned_cols=104 Identities=13% Similarity=-0.040 Sum_probs=68.7
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACC 292 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~ 292 (475)
.+..+...+...|++++|...|+..... -+.+...|..+..+|.+.|++++|...|++. ...| ++..|..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 3444555666667777777766666652 2334556666666777777777777777665 2233 4566777778888
Q ss_pred hcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 293 ARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 293 ~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
..|++++|...++++++..|.++.....
T Consensus 98 ~~g~~~~A~~~~~~al~~~p~~~~~~~~ 125 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALAAAQPAHEAL 125 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCcchHHH
Confidence 8888888888888888887776655443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.40 E-value=3.1e-06 Score=67.18 Aligned_cols=98 Identities=7% Similarity=-0.004 Sum_probs=78.3
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
.+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++++.+|.++..+..+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777777788888888888877776 2233 577888888888888888888888888888888888888888888
Q ss_pred HHhccChhHHHHHHHHHHhC
Q 038542 325 YAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~ 344 (475)
|...|++++|...++...+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 88889999888888887653
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.1e-05 Score=62.38 Aligned_cols=92 Identities=22% Similarity=0.310 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 225 (475)
.+..+...|...|++++|.+.|+++. ..+..+|..+...+...|++++|...|+++.... +.+..++..+...+..
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 89 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYK 89 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHH
Confidence 34444455555555555555554432 1233444444444555555555555555544432 2233444444444444
Q ss_pred CCCHHHHHHHHHHhhh
Q 038542 226 CGLVDKGREYFDSMKN 241 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~ 241 (475)
.|++++|...++.+.+
T Consensus 90 ~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 90 QGDYDEAIEYYQKALE 105 (125)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHH
Confidence 5555555554444443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.38 E-value=3e-06 Score=69.91 Aligned_cols=107 Identities=13% Similarity=-0.010 Sum_probs=80.6
Q ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 038542 213 DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISA 290 (475)
Q Consensus 213 ~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~ 290 (475)
...+..+...+...|++++|...|+...+. .+.+...|..+..+|.+.|++++|...|++. .+.| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 445666666777777777777777776652 2335667777777778888888888877776 3334 57888999999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCchHHHH
Q 038542 291 CCARGELKLAESITKRLIGNEPMHESNYVLL 321 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l 321 (475)
+...|++++|...++++++..|.+...+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 119 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKR 119 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 9999999999999999999999888765443
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=2.7e-06 Score=66.88 Aligned_cols=99 Identities=10% Similarity=0.018 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 246 IPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
+.+...+..+...+.+.|++++|...|++. ...| +...|..+...+...|++++|...++++.+..|.+...+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999987 4455 78889999999999999999999999999999999999999999
Q ss_pred HHHhccChhHHHHHHHHHHhC
Q 038542 324 IYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 324 ~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+|...|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999988764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.35 E-value=4e-06 Score=64.15 Aligned_cols=97 Identities=13% Similarity=0.162 Sum_probs=87.0
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
+...+..+...+...|++++|...|++. ...| +...|..+...+...|++++|...++++.+..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3566778888999999999999999988 3334 7888999999999999999999999999999999999999999999
Q ss_pred HhccChhHHHHHHHHHHhC
Q 038542 326 AKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~~ 344 (475)
...|++++|.+.++...+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTT
T ss_pred HHHhhHHHHHHHHHHHHHc
Confidence 9999999999999988764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.2e-06 Score=67.39 Aligned_cols=94 Identities=5% Similarity=-0.014 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc-------hHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES-------NYVL 320 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~-------~~~~ 320 (475)
..+..+...+.+.|++++|.+.|++. .+.| +...|..+..+|...|++++|++.++++++..|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888889999998888887 4445 6788999999999999999999999999988776543 5667
Q ss_pred HHHHHHhccChhHHHHHHHHHHh
Q 038542 321 LSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+..+|...|++++|.+.+++..+
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 78888899999999999988664
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.32 E-value=6.4e-06 Score=66.09 Aligned_cols=94 Identities=14% Similarity=0.062 Sum_probs=48.5
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEAN----PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
..+..+...+...|++++|.+.|++. ...|+ ...|..+...+...|++++|...++++.+..|.+...+..+..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~ 108 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHHH
Confidence 34444444455555555555555444 33343 34455555555555555555555555555555555555555555
Q ss_pred HHhccChhHHHHHHHHHHh
Q 038542 325 YAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~ 343 (475)
|...|++++|.+.+++..+
T Consensus 109 ~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 109 LEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-05 Score=64.51 Aligned_cols=110 Identities=12% Similarity=-0.036 Sum_probs=71.6
Q ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 038542 212 DDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWR 285 (475)
Q Consensus 212 ~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~ 285 (475)
+...+..+...+...|++++|...|+...+ ..|+ ...+..+...|...|++++|...+++. ...| +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 344555555555666666666666665553 2333 455666666666777777777666665 2233 567777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 286 TLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
.+..++...|++++|...++++.+..|.+...+..+..+
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 142 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNI 142 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence 788888888888888888888888888776665555444
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.30 E-value=4.7e-06 Score=66.12 Aligned_cols=101 Identities=6% Similarity=-0.140 Sum_probs=67.6
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038542 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLI 288 (475)
Q Consensus 211 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li 288 (475)
.+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++. ...| +...|..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 34555666666666666777776666666552 2234556666666777777777777776665 2223 566777788
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 289 SACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
.++...|++++|...++++.+..|.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChh
Confidence 8888888888888888888777665
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.30 E-value=1.2e-05 Score=62.78 Aligned_cols=113 Identities=17% Similarity=0.057 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (475)
.|..+...+...|++++|+..|++..... +.+...+..+...+...|++++|...++...+. .+.+...+..+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 14 RLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHHHHH
Confidence 34444445555555555555555554432 223444555555555555555555555555442 122344455555555
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC
Q 038542 260 CRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG 295 (475)
Q Consensus 260 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g 295 (475)
.+.|++++|...|++. ...| +...+..+...+...|
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 5555555555555554 2222 3444444444444444
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.1e-05 Score=78.96 Aligned_cols=117 Identities=7% Similarity=-0.033 Sum_probs=64.8
Q ss_pred HHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVD 230 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~ 230 (475)
...|.+.|++++|.+.|++.. ..+..+|..+..+|.+.|++++|++.+++..+.. +.+..++..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334556666777766666543 2245666666666666667777766666666642 334556666666666666666
Q ss_pred HHHHHHHHhhhhcCCCCChhHHHHHHHH--HHHcCCHHHHHHHHH
Q 038542 231 KGREYFDSMKNDFGIIPKIEHYGCMVDM--LCRSGRVKEAHEFIQ 273 (475)
Q Consensus 231 ~a~~~~~~m~~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~ 273 (475)
+|.+.|++..+. . +.+...+..+..+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~-~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV-K-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH-S-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh-C-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666666553 1 1122333333333 555666666666665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=0.0002 Score=65.68 Aligned_cols=229 Identities=12% Similarity=0.006 Sum_probs=126.9
Q ss_pred HcCChh-HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccCC----------hHHHHHHHHHHHHcCCCCCccHHHHHHHH
Q 038542 89 RLGLST-DAIDLFRQMQISGVCPDEI-TMVTVLSACTDLGA----------LEVGKWVESFIEKQMVNRSVGLCNALIDM 156 (475)
Q Consensus 89 ~~g~~~-~A~~~~~~m~~~g~~p~~~-t~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 156 (475)
+.|.+. +|++++..+... .|+.. .|+.--..+...+. ++++..+++.++... +-+..+|+.-.-.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 344443 567777776653 34333 33322222222221 456666677666653 2355666666566
Q ss_pred HHhcC--CHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCC-hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcC----
Q 038542 157 FAKCG--DVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGR-GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHC---- 226 (475)
Q Consensus 157 y~~~g--~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~---- 226 (475)
+.+.| +++++..+++++. .+|..+|+.-.-.+...|. .+++++.+.++.+.. +-|...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC
T ss_pred HhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhcc
Confidence 66666 3777777777665 3456677766666666676 477777777777754 33455554444333332
Q ss_pred ----------CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc-----------CCHHHHHHHHHhC-CCCCCHHHH
Q 038542 227 ----------GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS-----------GRVKEAHEFIQKM-PIEANPIIW 284 (475)
Q Consensus 227 ----------g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m-~~~p~~~~~ 284 (475)
+.++++++.+..... -.+-|...|+-+-..+.+. +.++++.+.++++ ...||. .|
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~-~w 273 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN-KW 273 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC-HH
T ss_pred ccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc-ch
Confidence 345666666666664 2233455555444444443 3456666666666 444543 34
Q ss_pred HHHHHHH-----HhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 285 RTLISAC-----CARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 285 ~~li~~~-----~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
..+..++ ...+..++....+.++.+++|...+-|.-+...
T Consensus 274 ~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 274 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp HHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3222211 234667777778888888888766655554433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.26 E-value=1.1e-05 Score=75.27 Aligned_cols=129 Identities=8% Similarity=-0.101 Sum_probs=95.2
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhc
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD--------------DVAFVGLLSACSHCGLVDKGREYFDSMKNDF 243 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~ 243 (475)
...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...++...+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 45666677777777888888888877776531111 467788888888888888888888888763
Q ss_pred CCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 038542 244 GIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAE-SITKRLI 308 (475)
Q Consensus 244 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~-~~~~~~~ 308 (475)
.+.+...|..+..+|...|++++|...|++. .+.| +...+..+...+...|+.++|. ..++++.
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2446778888888888888888888888877 3344 5778888888888888888883 4555554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.25 E-value=1.3e-05 Score=78.29 Aligned_cols=94 Identities=13% Similarity=0.063 Sum_probs=77.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..+|...|++++|...|+++++++|.+..++..+..++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 467888888999999999999999887 3334 68889999999999999999999999999999999999999999999
Q ss_pred hccChhHHHH-HHHHHH
Q 038542 327 KLLRWEKKTK-IREVMD 342 (475)
Q Consensus 327 ~~g~~~~a~~-~~~~m~ 342 (475)
+.|+++++.+ .+..|.
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988874 344443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.24 E-value=5.8e-06 Score=62.59 Aligned_cols=100 Identities=14% Similarity=0.013 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC---CHHHHHHHHH
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA---NPIIWRTLIS 289 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p---~~~~~~~li~ 289 (475)
..+..+...+...|++++|...++...+. .+.+...+..+..++...|++++|.+.+++. ...| +...|..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 7 EEYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TGGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 34455556666666666666666666552 2234556666666677777777777776665 2223 4667777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCCC
Q 038542 290 ACCAR-GELKLAESITKRLIGNEPMHE 315 (475)
Q Consensus 290 ~~~~~-g~~~~a~~~~~~~~~~~p~~~ 315 (475)
.+... |++++|.+.++++.+..|.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 78888 888888888888887776543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.5e-06 Score=74.34 Aligned_cols=148 Identities=10% Similarity=0.015 Sum_probs=81.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CCh----------------
Q 038542 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTI---------------- 178 (475)
Q Consensus 118 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~---------------- 178 (475)
........+.++.+.+.+....... ......+..+...|.+.|++++|...|++... .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344455667777666665433221 11344677788899999999999999997642 222
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..|..+..+|.+.|++++|+..+++..+.. +.+...+..+..++...|++++|...|+...+. .+.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH
Confidence 556666666667777777777777666642 334556666666666666666666666665542 12234445555555
Q ss_pred HHHcCCHHHHH
Q 038542 259 LCRSGRVKEAH 269 (475)
Q Consensus 259 ~~~~g~~~~A~ 269 (475)
+...++.+++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55444444443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=8.1e-05 Score=68.70 Aligned_cols=214 Identities=11% Similarity=0.073 Sum_probs=151.9
Q ss_pred CChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC-CHHHHHHHHHhcCC---CChhHHHHHHHHHHHc-C-ChHHHHH
Q 038542 126 GALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG-DVDKALKLFRSMNG---RTIVSWTSVIAGLAMH-G-RGLEAVA 199 (475)
Q Consensus 126 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-g-~~~~A~~ 199 (475)
+..++|..+.+.++.... .+..+|+.--..+...| ++++++++++.+.. ++..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 344678889999988753 36667787777778888 59999999998763 4668898877777776 7 8999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHH--------HHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC-------
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVD--------KGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR------- 264 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~------- 264 (475)
+++++.+.. +-|...|+.-.-.+.+.|..+ ++++.++.+.+. -+-|...|+....++.+.++
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccccccchHH
Confidence 999998864 345666655444444444444 889999988873 34466778777777877776
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHHhCC------CCCCc
Q 038542 265 VKEAHEFIQKM-PIEA-NPIIWRTLISACCARGEL--------------------KLAESITKRLIGNE------PMHES 316 (475)
Q Consensus 265 ~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~~~~~~------p~~~~ 316 (475)
++++++.++++ ...| |...|+-+-..+.+.|+. .........+.... +.++.
T Consensus 224 ~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 303 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPL 303 (349)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHH
Confidence 68888888776 3445 788898877777766653 22222222222222 34556
Q ss_pred hHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 317 NYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
+...|+.+|...|+.++|.++++.+.+
T Consensus 304 al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 304 ALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 778899999999999999999999864
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.22 E-value=1.6e-05 Score=62.01 Aligned_cols=107 Identities=8% Similarity=-0.007 Sum_probs=54.7
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----C-CCCC----HHHHHH
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----P-IEAN----PIIWRT 286 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~-~~p~----~~~~~~ 286 (475)
+..+...+...|++++|...|+..... .+.+...+..+...|...|++++|...+++. + ..++ ..+|..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 333444444444444444444444431 1223344444444555555555555554444 1 0112 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
+...+...|++++|...++++.+..| ++.....+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~ 122 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 67777777777777777777777666 344444444443
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-05 Score=65.88 Aligned_cols=64 Identities=9% Similarity=0.134 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
...|..+..++...|++++|...++++++.+|.++.+|..++.+|...|++++|...++...+.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4677888888888999999999999999888888888899999999999999999888877653
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.15 E-value=7.2e-06 Score=64.22 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=58.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CchHHHHHHHH
Q 038542 254 CMVDMLCRSGRVKEAHEFIQKM-PIEAN-P---IIWRTLISACCARGELKLAESITKRLIGNEPMH---ESNYVLLSHIY 325 (475)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m-~~~p~-~---~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~ 325 (475)
.+...+.+.|++++|...|++. ...|+ . ..+..+..++...|++++|...++++.+..|.+ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3445566666666666666665 11222 2 356666667777777777777777777777766 55567777777
Q ss_pred HhccChhHHHHHHHHHHh
Q 038542 326 AKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 326 ~~~g~~~~a~~~~~~m~~ 343 (475)
...|++++|...++.+.+
T Consensus 87 ~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776665
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.15 E-value=1e-05 Score=62.91 Aligned_cols=96 Identities=6% Similarity=-0.025 Sum_probs=62.8
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR 294 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~ 294 (475)
..+...+.+.|++++|...|+...+. -+.+...|..+..++.+.|++++|...|++. .+.| +...|..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34455666677777777777776652 2335566666777777777777777777766 3334 566777777888888
Q ss_pred CCHHHHHHHHHHHHhCCCCC
Q 038542 295 GELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 295 g~~~~a~~~~~~~~~~~p~~ 314 (475)
|++++|...++++++.+|.+
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 88888888888888877754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00011 Score=70.77 Aligned_cols=158 Identities=9% Similarity=-0.038 Sum_probs=80.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHhcCCC-----Ch----hHHHHHHHHHHHcCChHHHHHHHHHHHH----cCCCCC-HHHH
Q 038542 151 NALIDMFAKCGDVDKALKLFRSMNGR-----TI----VSWTSVIAGLAMHGRGLEAVALFEEMLE----AGVPPD-DVAF 216 (475)
Q Consensus 151 ~~li~~y~~~g~~~~A~~~~~~~~~~-----~~----~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~ 216 (475)
..|+..|.+.|++++|.+.+...... +. ...+.+-..+...|+.++|..+++.... .+..+. ..++
T Consensus 59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 138 (434)
T 4b4t_Q 59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS 138 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence 44555566666666666555544310 10 1122222233344566666666655533 122222 3345
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCC--HHH
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKNDFGIIP----KIEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEAN--PII 283 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~--~~~ 283 (475)
..+...+...|++++|..+++.......-.. ....+..++..|...|++++|..++++. +..|. ...
T Consensus 139 ~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 218 (434)
T 4b4t_Q 139 IKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAEL 218 (434)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHH
Confidence 5566666666666666666665543211111 1345666666666667776666666554 11111 233
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 038542 284 WRTLISACCARGELKLAESITKRLI 308 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~ 308 (475)
+..+...+...|+++.|...+.+..
T Consensus 219 ~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 219 DLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4445555566667777766666554
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=2.6e-05 Score=75.31 Aligned_cols=164 Identities=5% Similarity=-0.188 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHhcCCCHHHHHHHHHHhhhhc---CCCC-Chh
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEA-GVPPDDV----AFVGLLSACSHCGLVDKGREYFDSMKNDF---GIIP-KIE 250 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~----t~~~ll~~~~~~g~~~~a~~~~~~m~~~~---~~~p-~~~ 250 (475)
++..+...|...|++++|.+++..+... +..++.. ..+.+-..+...|+.+.+..++....... +..+ ...
T Consensus 57 al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 136 (434)
T 4b4t_Q 57 SILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHS 136 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHH
Confidence 4667889999999999999999987653 1122222 23333444556789999999888765421 2222 246
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCC----C
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-------PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNE---PMH----E 315 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~---p~~----~ 315 (475)
.+..+...|...|++++|..++++. ..+| ...+|..++..|...|++++|..++++..... +.+ .
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 216 (434)
T 4b4t_Q 137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA 216 (434)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence 7788999999999999999999876 2122 35678889999999999999999999987543 222 2
Q ss_pred chHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 316 SNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 316 ~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+..++..+...|++++|...+....+
T Consensus 217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 217 ELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 3456677788889999999888776643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.13 E-value=9.8e-06 Score=65.44 Aligned_cols=91 Identities=10% Similarity=-0.043 Sum_probs=69.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC--------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------C
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM-PIEA--------N-----PIIWRTLISACCARGELKLAESITKRLIGN-------E 311 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m-~~~p--------~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~ 311 (475)
......+.+.|++++|...|++. .+.| + ...|..+..++...|++++|+..++++++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444555556666666666554 1111 1 338888999999999999999999999988 9
Q ss_pred CCCCchH----HHHHHHHHhccChhHHHHHHHHHHh
Q 038542 312 PMHESNY----VLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 312 p~~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|++...| .....++...|++++|...|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9988888 9999999999999999999988865
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=1.2e-05 Score=62.83 Aligned_cols=96 Identities=8% Similarity=0.081 Sum_probs=83.8
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------CchHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIE-ANPIIWRTLISACCARGELKLAESITKRLIGNEPMH-------ESNYV 319 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~ 319 (475)
...+..+...+...|++++|...|++. ... .+...|..+...+...|++++|...++++.+..|.+ ...+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456778888999999999999999987 223 368889999999999999999999999999887665 67888
Q ss_pred HHHHHHHhccChhHHHHHHHHHHhC
Q 038542 320 LLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.++.+|...|++++|.+.++...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 9999999999999999999988763
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=4.2e-05 Score=59.69 Aligned_cols=99 Identities=10% Similarity=-0.004 Sum_probs=61.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh---hHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-C---HHHHHHHHHH
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKI---EHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-N---PIIWRTLISA 290 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~---~~~~~~li~~ 290 (475)
+...+...|++++|...|+...+. . +.+. ..+..+..++.+.|++++|...|++. ...| + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL-Y-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH-C-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH-C-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 344555566666666666666542 1 1122 35555666666677777777666665 2223 2 4566677777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 291 CCARGELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
+...|++++|...++++.+..|.++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 88888888888888888887777654433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.09 E-value=2.2e-05 Score=74.19 Aligned_cols=138 Identities=10% Similarity=-0.053 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..|..+...+.+.|++++|+..|++..+. .|+.. .....+++ .. ..+.+...|..+..+
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~~~~~-------~~--~~~~~~~~~~nla~~ 282 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAEDADG-------AK--LQPVALSCVLNIGAC 282 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSCHHHH-------GG--GHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccChHHH-------HH--HHHHHHHHHHHHHHH
Confidence 34666666677777777777777766542 01000 00001110 00 001245678888889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
|.+.|++++|.+.+++. ...| +...|..+..++...|++++|...+++++++.|.+...+..+..++...++.+++.+
T Consensus 283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999887 5555 678899999999999999999999999999999998899999999988888877754
Q ss_pred H
Q 038542 337 I 337 (475)
Q Consensus 337 ~ 337 (475)
.
T Consensus 363 ~ 363 (370)
T 1ihg_A 363 A 363 (370)
T ss_dssp C
T ss_pred H
Confidence 3
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.5e-05 Score=64.72 Aligned_cols=62 Identities=10% Similarity=-0.038 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC------CCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNE------PMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
.++..+...+...|++++|...+++..+.. +.....+..+..+|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 345556666677777777777777665432 11133566777788888888888887776654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.08 E-value=6e-05 Score=59.00 Aligned_cols=59 Identities=5% Similarity=-0.032 Sum_probs=26.4
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
|..+...+.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|+..++...
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al 69 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV 69 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence 3334444444444444444444444432 2233344444444444444444444444443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.3e-05 Score=63.61 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC----hhHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCC-CHH
Q 038542 215 AFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK----IEHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEA-NPI 282 (475)
Q Consensus 215 t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p-~~~ 282 (475)
++..+...+...|++++|...++.......-.++ ...+..+...+...|++++|.+.+++. +..+ ...
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4444555555555555555555554432110111 234455555666666666666665554 1111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 038542 283 IWRTLISACCARGELKLAESITKRLIGN 310 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~~ 310 (475)
++..+...+...|++++|.+.+++..+.
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5666777778888888888888876654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.2e-06 Score=65.32 Aligned_cols=82 Identities=18% Similarity=0.156 Sum_probs=49.8
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 262 SGRVKEAHEFIQKM-PI---EA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 262 ~g~~~~A~~~~~~m-~~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
.|++++|...|++. .. .| +...|..+...+...|++++|...++++++..|.++..+..+..+|...|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 35555555555555 22 13 345566666666667777777777777776666666666667777777777777776
Q ss_pred HHHHHHh
Q 038542 337 IREVMDK 343 (475)
Q Consensus 337 ~~~~m~~ 343 (475)
.+++..+
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.4e-05 Score=65.72 Aligned_cols=76 Identities=24% Similarity=0.141 Sum_probs=60.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-chHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHE-SNYVLLSHI 324 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~ 324 (475)
...|..+..+|.+.|++++|...+++. .+.| +...|..+..++...|++++|...++++++++|.++ .....+..+
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 457778888888999999999888877 3344 678899999999999999999999999999999876 333344333
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0011 Score=60.78 Aligned_cols=217 Identities=14% Similarity=0.060 Sum_probs=150.1
Q ss_pred ccCCh-HHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC----------HHHHHHHHHhcC---CCChhHHHHHHHHHH
Q 038542 124 DLGAL-EVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD----------VDKALKLFRSMN---GRTIVSWTSVIAGLA 189 (475)
Q Consensus 124 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~----------~~~A~~~~~~~~---~~~~~~~~~li~~~~ 189 (475)
+.|.+ ++|....+.++..... +..+|+.--......|. +++++.+++.+. .++..+|+.-.-.+.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHh
Confidence 44444 4788888888876422 44455544333333333 678888888765 347788988887888
Q ss_pred HcCC--hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC-HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc----
Q 038542 190 MHGR--GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL-VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS---- 262 (475)
Q Consensus 190 ~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---- 262 (475)
+.|+ +++++.++.++.+.. +-|...|+.-.-.+...|. ++++++.++.+.+. -+-|...|+....++.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSCCC
T ss_pred ccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhhcc
Confidence 8884 899999999999875 4566777766666777787 58999999999974 344666676666666554
Q ss_pred ----------CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 263 ----------GRVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR-----------GELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 263 ----------g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
+.++++++.+.+. ...| |...|+-+-..+... +.++++++.++++++.+|++.-.+.
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~~w~l~ 276 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPENKWCLL 276 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCcccchHHH
Confidence 4578888888877 3344 788887665555554 4588999999999999998854443
Q ss_pred HHHHHH---HhccChhHHHHHHHHHHhC
Q 038542 320 LLSHIY---AKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 320 ~l~~~~---~~~g~~~~a~~~~~~m~~~ 344 (475)
.++... ...|..+++...+.++.+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 277 TIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 333221 2356677777777777653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.9e-05 Score=73.66 Aligned_cols=146 Identities=15% Similarity=0.010 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..|..+...+.+.|++++|+..|++.... .|+... +...++.+++...+ . ...|..+..+
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~~ 239 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHHH
Confidence 44666777778888899999888887764 354432 22333333333222 1 1256777778
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH-HhccChhHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY-AKLLRWEKKT 335 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~a~ 335 (475)
|.+.|++++|...+++. ...| +...|..+..+|...|++++|...|+++++..|.+..++..|..+. ...+..+.+.
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888776 3334 6778888888888888888888888888888888877777777663 3456677777
Q ss_pred HHHHHHHhC
Q 038542 336 KIREVMDKR 344 (475)
Q Consensus 336 ~~~~~m~~~ 344 (475)
+.+..|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 777777653
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.98 E-value=5.7e-06 Score=63.86 Aligned_cols=91 Identities=12% Similarity=0.110 Sum_probs=58.2
Q ss_pred CCCHHHHHHHHHHhhhhcC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 038542 226 CGLVDKGREYFDSMKNDFG--IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~ 301 (475)
.|++++|...|++..+. + -+.+...+..+..+|.+.|++++|...|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 45566666666666542 2 1223455666667777777777777777766 2233 5667777888888888888888
Q ss_pred HHHHHHHhCCCCCCch
Q 038542 302 SITKRLIGNEPMHESN 317 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~ 317 (475)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 8888888877776543
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-05 Score=74.09 Aligned_cols=114 Identities=6% Similarity=-0.099 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 038542 214 VAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCA 293 (475)
Q Consensus 214 ~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~ 293 (475)
..+..+...+.+.|++++|...|+..... .|+.. .+...|+.+++...+. ...|..+..++..
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~-------~~~~~~~~~~~~~~l~-------~~~~~nla~~~~~ 242 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDF-------MFQLYGKYQDMALAVK-------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHH-------HHTCCHHHHHHHHHHH-------THHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccch-------hhhhcccHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 34666778888999999999999987753 23322 1223344444444332 2378889999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.|++++|...++++++.+|.+..+|..+..+|...|++++|.+.+++..+.
T Consensus 243 ~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999887653
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00011 Score=71.76 Aligned_cols=124 Identities=10% Similarity=0.051 Sum_probs=98.7
Q ss_pred HHhcCCCHHHHHHHHHHhhhhc----CC-CC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHH
Q 038542 222 ACSHCGLVDKGREYFDSMKNDF----GI-IP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM---------PIEAN-PIIWR 285 (475)
Q Consensus 222 ~~~~~g~~~~a~~~~~~m~~~~----~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~ 285 (475)
.+...|++++|+.++++..+.. |- .| ...+++.|..+|...|++++|..++++. +..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4567899999999887776532 11 12 2467889999999999999999998876 34453 46789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCc---hHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 286 TLISACCARGELKLAESITKRLIG-----NEPMHES---NYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 286 ~li~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.|...|...|++++|+.+++++++ .+|+++. ....|..++...+++++|+.++.++++.-
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~ 465 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 5677655 45578888999999999999999998744
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.7e-05 Score=58.12 Aligned_cols=91 Identities=13% Similarity=0.054 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC------CchHH
Q 038542 248 KIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH------ESNYV 319 (475)
Q Consensus 248 ~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~------~~~~~ 319 (475)
+...+..+...+.+.|++++|.+.|++. ...| +...|..+..++...|++++|...++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777788888888888888888877 3334 67889999999999999999999999999999988 66677
Q ss_pred HHHHHHHhccChhHHHHHH
Q 038542 320 LLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 320 ~l~~~~~~~g~~~~a~~~~ 338 (475)
.+..++...|+++.|.+.+
T Consensus 83 ~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHhHhhhHhHH
Confidence 7788888888777765444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00086 Score=66.97 Aligned_cols=167 Identities=10% Similarity=0.028 Sum_probs=117.3
Q ss_pred HHHHHHHHhcC---CCChhHHHHHHHHHHHcCC----------hHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCC--C
Q 038542 164 DKALKLFRSMN---GRTIVSWTSVIAGLAMHGR----------GLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCG--L 228 (475)
Q Consensus 164 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g--~ 228 (475)
++|.+.++++. ..+..+|+.--..+...|+ ++++++.++++.+.. +-+..+|..-.-++.+.+ +
T Consensus 46 eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~ 124 (567)
T 1dce_A 46 ESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN 124 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCC
T ss_pred HHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccccc
Confidence 44555555543 2234556555555555555 677888888777754 345566666666666777 6
Q ss_pred HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------
Q 038542 229 VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSG-RVKEAHEFIQKM-PIEA-NPIIWRTLISACCAR----------- 294 (475)
Q Consensus 229 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~----------- 294 (475)
++++.+.++.+.+. -+-+...|+.-..++.+.| .++++.+.++++ ...| |...|+.....+...
T Consensus 125 ~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~ 202 (567)
T 1dce_A 125 WARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGR 202 (567)
T ss_dssp HHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCS
T ss_pred HHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccccc
Confidence 68888888888763 2335566776666777777 788888888877 4445 677787777766653
Q ss_pred ---CCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhH
Q 038542 295 ---GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333 (475)
Q Consensus 295 ---g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 333 (475)
+.++++.+.+.+++..+|.+..+|..+..++.+.++.++
T Consensus 203 ~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 203 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred ccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999988887554
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00025 Score=69.08 Aligned_cols=127 Identities=11% Similarity=-0.037 Sum_probs=96.9
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPD---------------DVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
...|..+...|.+.|++++|+..|++..+.. +.+ ...|..+..+|.+.|++++|+..++...+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 3467777788888888888888888887742 112 477888888999999999999999988873
Q ss_pred cCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH-HHHHH
Q 038542 243 FGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAES-ITKRL 307 (475)
Q Consensus 243 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~-~~~~~ 307 (475)
.+.+...|..+..+|...|++++|...|++. .+.| +...|..+..++...++.+++.+ .+++|
T Consensus 347 --~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 --DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp --STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888899999999999999999887 5556 56678888888888888877764 34444
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.81 E-value=2.6e-05 Score=62.95 Aligned_cols=69 Identities=13% Similarity=0.057 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM--------PIEAN-PIIW----RTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
.|..+..++.+.|++++|+..+++. .+.|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5555666666666666666655554 33774 5678 899999999999999999999999999887665
Q ss_pred HH
Q 038542 318 YV 319 (475)
Q Consensus 318 ~~ 319 (475)
+.
T Consensus 139 ~~ 140 (159)
T 2hr2_A 139 TP 140 (159)
T ss_dssp CT
T ss_pred HH
Confidence 44
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.80 E-value=9e-05 Score=55.15 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+...|..+...+...|++++|...|+++++.+|.++.+|..+..+|...|++++|.+.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 67889999999999999999999999999999999999999999999999999999999887653
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.79 E-value=5.6e-05 Score=57.81 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=63.1
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|...|++. ...| +...|..+...+...|++++|...++++++.+|.+...|..+..+|...|++++|...++...+
T Consensus 4 a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44555554 3344 6778888888999999999999999999999998888899999999999999999999988765
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00012 Score=52.95 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=63.1
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
...+..+...+.+.|++++|...+++. ...| +...|..+...+...|++++|...++++.+..|.++..+..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777778888888888887776 2233 57778888888889999999999999999888888888888877776
Q ss_pred hcc
Q 038542 327 KLL 329 (475)
Q Consensus 327 ~~g 329 (475)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00022 Score=67.20 Aligned_cols=117 Identities=12% Similarity=0.004 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCC-------------------CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCC
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNG-------------------RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGV 209 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~-------------------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 209 (475)
.+..+...|.+.|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++..+..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 356677888888888888888876543 123445555555566666666666666555532
Q ss_pred CCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHH
Q 038542 210 PPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEA 268 (475)
Q Consensus 210 ~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A 268 (475)
+.+...+..+..+|...|++++|...|+...+. .+.+...+..+..++.+.++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l--~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence 223445555555555566666666555555542 112334444444444444444444
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=4.5e-05 Score=61.43 Aligned_cols=85 Identities=6% Similarity=-0.007 Sum_probs=68.5
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCchHHHHHHHHHh
Q 038542 260 CRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGE----------LKLAESITKRLIGNEPMHESNYVLLSHIYAK 327 (475)
Q Consensus 260 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 327 (475)
.+.+.+++|.+.++.. ...| +...|..+..++...++ +++|+..|+++++++|++..+|..+.++|..
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 3455677777777766 3344 67777777777777665 5699999999999999999999999999998
Q ss_pred cc-----------ChhHHHHHHHHHHhC
Q 038542 328 LL-----------RWEKKTKIREVMDKR 344 (475)
Q Consensus 328 ~g-----------~~~~a~~~~~~m~~~ 344 (475)
.| ++++|.+.|++..+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 75 899999999988764
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0004 Score=67.78 Aligned_cols=123 Identities=13% Similarity=-0.009 Sum_probs=93.7
Q ss_pred HHHHcCChHHHHHHHHHHHHc---CCCC---C-HHHHHHHHHHHhcCCCHHHHHHHHHHhhhh----cCC-CCC-hhHHH
Q 038542 187 GLAMHGRGLEAVALFEEMLEA---GVPP---D-DVAFVGLLSACSHCGLVDKGREYFDSMKND----FGI-IPK-IEHYG 253 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~---g~~p---~-~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~----~~~-~p~-~~~~~ 253 (475)
.+...|++++|+.++++..+. -+.| + ..+++.|..+|...|++++|..++++...- +|- .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 456789999999999988653 1222 2 457899999999999999999998887642 222 232 46788
Q ss_pred HHHHHHHHcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 254 CMVDMLCRSGRVKEAHEFIQKM---------PIEANP-IIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 254 ~li~~~~~~g~~~~A~~~~~~m---------~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
.|...|...|++++|..++++. +-.|++ .+.+.+-.++...+.++.|+..++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999887 334433 3455666777788999999999988865
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00046 Score=66.23 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=89.0
Q ss_pred HHHHHHcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCc---h
Q 038542 256 VDMLCRSGRVKEAHEFIQKM---------PIEA-NPIIWRTLISACCARGELKLAESITKRLIG-----NEPMHES---N 317 (475)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m---------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~ 317 (475)
+..+.+.|++++|..++++. +..| ...+++.|..+|...|++++|+.+++++++ .+|.++. +
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 55566788999999888766 1222 246788999999999999999999999874 3555544 6
Q ss_pred HHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHH
Q 038542 318 YVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMK 389 (475)
Q Consensus 318 ~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~ 389 (475)
+..|..+|...|++++|..++++..+--. ..-...||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~------------------~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMR------------------VTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------HHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHH------------------HhcCCCChHHHHHHHHHHHHHHHHh
Confidence 88899999999999999999988865211 1123469999999988888776665
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00031 Score=53.55 Aligned_cols=79 Identities=9% Similarity=0.046 Sum_probs=48.3
Q ss_pred HHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 232 GREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 232 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
+...|+...+ ..+.+...+..+...|.+.|++++|...|++. ...| +...|..+..++...|++++|...++++.+
T Consensus 4 a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444554443 22234555666666666666666666666665 2223 456677777777777777777777777776
Q ss_pred CCC
Q 038542 310 NEP 312 (475)
Q Consensus 310 ~~p 312 (475)
..|
T Consensus 82 ~~~ 84 (115)
T 2kat_A 82 AAQ 84 (115)
T ss_dssp HHH
T ss_pred hcc
Confidence 654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00044 Score=51.98 Aligned_cols=66 Identities=12% Similarity=0.047 Sum_probs=61.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 279 ANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
++...|..+...+...|++++|...++++++..|.++..+..+..+|...|++++|.+.+++..+.
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 356778889999999999999999999999999999999999999999999999999999998764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0034 Score=49.60 Aligned_cols=111 Identities=11% Similarity=-0.104 Sum_probs=68.0
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH----cCCHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR----SGRVKE 267 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~ 267 (475)
+++++|++.|++..+.| .|+.. |...|...+.+++|..+|+...+. -+...+..|..+|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 35667777777777766 34443 555666666777777777776663 245556666666665 566666
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCC
Q 038542 268 AHEFIQKMPIEANPIIWRTLISACCA----RGELKLAESITKRLIGNE 311 (475)
Q Consensus 268 A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~ 311 (475)
|.++|++.--..++..+..|...|.. .++.++|.+.+++..+.+
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666665222345555556555555 566666666666665554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0037 Score=49.44 Aligned_cols=109 Identities=15% Similarity=-0.041 Sum_probs=56.2
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHH
Q 038542 92 LSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK----CGDVDKAL 167 (475)
Q Consensus 92 ~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~ 167 (475)
++++|++.|++..+.| .|+.. +-..+...+.++.|...+.+..+.| +...+..|..+|.. .+++++|.
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 4556666666666554 22222 3334444455555666666555543 34455555555555 45555555
Q ss_pred HHHHhcCC-CChhHHHHHHHHHHH----cCChHHHHHHHHHHHHcC
Q 038542 168 KLFRSMNG-RTIVSWTSVIAGLAM----HGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 168 ~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 208 (475)
..|++..+ .+..++..|...|.. .++.++|...|++..+.|
T Consensus 82 ~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 82 QYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 55555432 244445555555555 455555555555555544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.0011 Score=48.32 Aligned_cols=67 Identities=7% Similarity=0.046 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 279 ANPIIWRTLISACCARGE---LKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+|+..+..+..++...++ .++|..+++++++.+|.++.+...+...+...|++++|...|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 477888888888865555 6999999999999999999999999999999999999999999998764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.0051 Score=61.37 Aligned_cols=149 Identities=13% Similarity=0.031 Sum_probs=117.3
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC----------HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL----------VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
...++|++.++++...+ +-+...|+.--.++...|+ ++++...++.+.+. -+-+...|..-.-++.+
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 44568899999999864 3344556555555555566 89999999999873 34466778877888888
Q ss_pred cC--CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc--------
Q 038542 262 SG--RVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG-ELKLAESITKRLIGNEPMHESNYVLLSHIYAKL-------- 328 (475)
Q Consensus 262 ~g--~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-------- 328 (475)
.| +++++.++++++ ...| |...|+.-...+...| .++++.+.++++++.+|.+..+|.....++.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 120 LPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccc
Confidence 89 779999999998 3344 7888988888888888 899999999999999999999999888888774
Q ss_pred ------cChhHHHHHHHHHHh
Q 038542 329 ------LRWEKKTKIREVMDK 343 (475)
Q Consensus 329 ------g~~~~a~~~~~~m~~ 343 (475)
+.++++.+.++....
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHh
Confidence 557788877776654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00056 Score=65.59 Aligned_cols=104 Identities=13% Similarity=0.034 Sum_probs=78.0
Q ss_pred HcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCc---hHHHHH
Q 038542 261 RSGRVKEAHEFIQKM---------PIEAN-PIIWRTLISACCARGELKLAESITKRLIG-----NEPMHES---NYVLLS 322 (475)
Q Consensus 261 ~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~---~~~~l~ 322 (475)
..|++++|..++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|+++. +++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 347788888888765 23343 46789999999999999999999999874 4555544 688999
Q ss_pred HHHHhccChhHHHHHHHHHHhCCCccCCCccEEEECCEEEEEEeCCCCCccHHHHHHHHH
Q 038542 323 HIYAKLLRWEKKTKIREVMDKRGMKKIPGSTLIELDNEIYEFVCGDKSHHQSKEIYEMLD 382 (475)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 382 (475)
.+|..+|++++|..++++..+--.. .-...||...++...++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEV------------------AHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTCHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHH------------------HcCCCChHHHHHHHHHh
Confidence 9999999999999999988652211 12246888877766554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.23 E-value=0.00019 Score=57.78 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=47.1
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccCh
Q 038542 265 VKEAHEFIQKM-PIEA-NPIIWRTLISACCAR-----------GELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRW 331 (475)
Q Consensus 265 ~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 331 (475)
+++|...|++. .+.| +...|..+..+|... |++++|.+.|+++++++|.+. .|...+. ..
T Consensus 62 ~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~-~y~~al~------~~ 134 (158)
T 1zu2_A 62 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLE------MT 134 (158)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHH------HH
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH-HHHHHHH------HH
Confidence 34666666665 4444 456666777777665 589999999999999999874 3322222 23
Q ss_pred hHHHHHHHHHHhCC
Q 038542 332 EKKTKIREVMDKRG 345 (475)
Q Consensus 332 ~~a~~~~~~m~~~~ 345 (475)
++|.+++-.+...+
T Consensus 135 ~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 135 AKAPQLHAEAYKQG 148 (158)
T ss_dssp HTHHHHHHHHHHSS
T ss_pred HhCHhccCcccccc
Confidence 55555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0042 Score=44.38 Aligned_cols=61 Identities=23% Similarity=0.342 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
.|..+...+...|++++|+..|++..+.. +.+...+..+..++...|++++|...++...+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 34444444555555555555555554432 22344444555555555555555555555443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0025 Score=50.67 Aligned_cols=91 Identities=14% Similarity=0.096 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCC-C-CCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCcc
Q 038542 279 ANPIIWRTLISACCARG---ELKLAESITKRLIGNE-P-MHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGST 353 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 353 (475)
++..+.-.+..++++.+ ++++|+.+++.+.+.+ | .+...+..|.-+|.+.|++++|.+.++.+.+..
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ie-------- 101 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTE-------- 101 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--------
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--------
Confidence 57777777888888877 6668999999988877 6 446678888889999999999999998887632
Q ss_pred EEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCccc
Q 038542 354 LIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYVP 395 (475)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~p 395 (475)
|...++..+.+.+.+.+.+.|+.-
T Consensus 102 ------------------P~n~QA~~Lk~~ie~~~~kdgl~G 125 (152)
T 1pc2_A 102 ------------------PQNNQAKELERLIDKAMKKDGLVG 125 (152)
T ss_dssp ------------------TTCHHHHHHHHHHHHHHHHTTCCC
T ss_pred ------------------CCCHHHHHHHHHHHHHHHHhhHHH
Confidence 444455555555556777777653
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0022 Score=47.33 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=31.1
Q ss_pred hhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 178 IVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 178 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
...|..+...|...|++++|+..|++..+.. +.+...|..+..+|...|++++|...|+...
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444455555555555555555555555432 2233444555555555555555555555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.89 E-value=0.06 Score=56.14 Aligned_cols=41 Identities=20% Similarity=0.254 Sum_probs=19.2
Q ss_pred CHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038542 61 GIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103 (475)
Q Consensus 61 ~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 103 (475)
+++.|+++...+. +...|..+...+.+.++++.|.+.|.++
T Consensus 667 ~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 667 QLTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp CHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 4444444443332 3344555555555555555555555444
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.035 Score=42.53 Aligned_cols=141 Identities=13% Similarity=0.074 Sum_probs=98.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
+.-.|..++..++..+.... .+..-||.++.-....-+-+-..++++.+-+-+.+ ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDi--------------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDL--------------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCG--------------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCc--------------HhhhcHHH
Confidence 34456777777777776653 24555666665555555555555555555443222 23455555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 268 A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
....+-.++ .+.......++.+...|+-|.-.++...+....|.++....-+..+|.+.|+..++.+++.+.-++|++
T Consensus 80 Vi~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 80 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 555555553 245566778889999999999999999987777778899999999999999999999999999999975
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0069 Score=44.24 Aligned_cols=64 Identities=14% Similarity=0.127 Sum_probs=52.2
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-PIEA-NPI-IWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
....+.+.|++++|...|++. ...| +.. .|..+..++...|++++|...++++++.+|.+...+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 455677888889998888877 3344 566 888888899999999999999999999999887765
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.025 Score=52.19 Aligned_cols=137 Identities=13% Similarity=0.002 Sum_probs=70.4
Q ss_pred CChhHHHHHHHHHH--HcCC---hHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhc----CC-CHHHH---HHHHHHhhh
Q 038542 176 RTIVSWTSVIAGLA--MHGR---GLEAVALFEEMLEAGVPPD-DVAFVGLLSACSH----CG-LVDKG---REYFDSMKN 241 (475)
Q Consensus 176 ~~~~~~~~li~~~~--~~g~---~~~A~~l~~~m~~~g~~p~-~~t~~~ll~~~~~----~g-~~~~a---~~~~~~m~~ 241 (475)
.+..+|...+.+.. ..+. ..+|..+|++..+. .|+ ...+..+.-+|.. .+ ..... ...+.....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 36667777766543 2333 46788888888885 455 3444444433320 00 00010 011111110
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
....+.+...|..+...+...|++++|...++++ ...|+...|..+...+...|++++|.+.++++..++|..
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 0022344555555555555556666666666665 333555555555556666666666666666666666643
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.0091 Score=57.19 Aligned_cols=93 Identities=13% Similarity=0.040 Sum_probs=72.1
Q ss_pred cCCCHHHHHHHHHHhhhhcC--CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HHHHHHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFG--IIP----KIEHYGCMVDMLCRSGRVKEAHEFIQKM---------PIEAN-PIIWRTLI 288 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~~~~~li 288 (475)
+.|++++|..++++..+... +.| ...+++.|..+|...|++++|..++++. +..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 46788999998887665311 122 2467889999999999999999999887 34454 45689999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh-----CCCCCCch
Q 038542 289 SACCARGELKLAESITKRLIG-----NEPMHESN 317 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~ 317 (475)
..|...|++++|+.+++++++ .+|+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999864 56777644
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.014 Score=55.83 Aligned_cols=101 Identities=8% Similarity=-0.028 Sum_probs=76.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcC--CCC----ChhHHHHHHHHHHHcCCHHHHHHHHHhC---------CCCCC-HH
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFG--IIP----KIEHYGCMVDMLCRSGRVKEAHEFIQKM---------PIEAN-PI 282 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~--~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m---------~~~p~-~~ 282 (475)
.+..+.+.|++++|+.+++...+... +.| ...+++.+..+|...|++++|+.++++. +..|+ ..
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~ 372 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV 372 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence 34556678899999999888765211 122 2467888899999999999999998876 34453 45
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCchHH
Q 038542 283 IWRTLISACCARGELKLAESITKRLIG-----NEPMHESNYV 319 (475)
Q Consensus 283 ~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~p~~~~~~~ 319 (475)
+++.|...|...|++++|+.+++++++ .+|+++.+-.
T Consensus 373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 373 QVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 789999999999999999999999864 5787765443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0035 Score=45.88 Aligned_cols=59 Identities=20% Similarity=0.348 Sum_probs=53.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCc-hHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHES-NYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
....+...|++++|...++++++..|.+.. .+..+..+|...|++++|.+.+++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 456678899999999999999999999998 99999999999999999999999987643
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.13 Score=53.66 Aligned_cols=130 Identities=11% Similarity=0.108 Sum_probs=70.0
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChH
Q 038542 116 VTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195 (475)
Q Consensus 116 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 195 (475)
..++..+.+.|.++.|.++.+ +. ..-.+.+..+|+++.|.++.+.+. +...|..+...+.+.|+++
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~---------~~---~~~f~~~l~~~~~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~ 698 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISP---------DQ---DQKFELALKVGQLTLARDLLTDES--AEMKWRALGDASLQRFNFK 698 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCC---------CH---HHHHHHHHHHTCHHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhCCChHHheecCC---------Cc---chheehhhhcCCHHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHH
Confidence 445555566666666554432 11 111344566777777777766653 4567777777777777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 196 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
.|.+.|.++.. |..+...+...|+.+....+-+..... | -++.-..+|.+.|++++|.+++.++
T Consensus 699 ~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 699 LAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 77777776543 223444444455555544443333321 1 1233333445555555555555444
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.02 Score=41.50 Aligned_cols=78 Identities=9% Similarity=0.030 Sum_probs=58.3
Q ss_pred CCChhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 246 IPKIEHYGCMVDMLCRSGR---VKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 246 ~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
++++..+..+..++...++ .++|..++++. ...| ++..+..+...+...|++++|...|+++++.+|. ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4566777777777765544 68888888887 4445 6778888888999999999999999999999987 333444
Q ss_pred HHHH
Q 038542 321 LSHI 324 (475)
Q Consensus 321 l~~~ 324 (475)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.27 Score=40.03 Aligned_cols=130 Identities=10% Similarity=0.089 Sum_probs=85.5
Q ss_pred HHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 038542 52 VHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131 (475)
Q Consensus 52 i~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 131 (475)
.+...++| +++.|.++.+.+ .+...|..|......+|+++-|.+.|.+... +..+.-.|...|+.+.-
T Consensus 12 F~LAL~lg-~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 12 FDLALEYG-NLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHHHHTT-CHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHHHHhcC-CHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 34455677 999999988776 4678899999999999999999999988764 34555556667777766
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038542 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 204 (475)
..+-......| -++.-...+.-.|+++++.++|.+...-.. -+......|..+.|.++.+++
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~e-----A~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGSLPL-----AYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHH-----HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCChHH-----HHHHHHHcCcHHHHHHHHHHh
Confidence 65555555443 234445556677888888888876543111 111112245556666665544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.024 Score=42.04 Aligned_cols=73 Identities=16% Similarity=0.142 Sum_probs=51.7
Q ss_pred hhHHHHHHHHHHHcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 249 IEHYGCMVDMLCRSGRVKEAHEFIQKM-----P----IEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 249 ~~~~~~li~~~~~~g~~~~A~~~~~~m-----~----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
...+..|...+.+.|++..|...|+.. + -.+...++..|..++.+.|+++.|...++++.+..|.+..+..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~ 84 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG 84 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence 344455566666666666666666554 0 1235677888999999999999999999999999998866544
Q ss_pred HH
Q 038542 320 LL 321 (475)
Q Consensus 320 ~l 321 (475)
.+
T Consensus 85 n~ 86 (104)
T 2v5f_A 85 NL 86 (104)
T ss_dssp HH
T ss_pred hH
Confidence 33
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.18 Score=46.45 Aligned_cols=72 Identities=10% Similarity=0.067 Sum_probs=43.0
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHH
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYG 253 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~ 253 (475)
+..+|.++...+...|++++|...++++...+ |+...|..+...+.-.|++++|.+.+++... +.|...+|.
T Consensus 276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr---L~P~~~t~~ 347 (372)
T 3ly7_A 276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN---LRPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---HSCSHHHHH
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCcChHH
Confidence 45555555555555566666666666666653 5655665566666666666666666665553 245544443
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.15 Score=41.60 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=84.7
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 233 (475)
.+....+|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|.-.|+.+.-.
T Consensus 12 F~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 34556788888888887776 3567888888888888888888888877543 334445555667776655
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRL 307 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~ 307 (475)
.+-+....+ | -++.....+.-.|+++++.++|.+.+.-|.... .....|-.+.|.++.+.+
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 544443332 2 245556667778888888888888764332211 123356677777776654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.053 Score=41.41 Aligned_cols=65 Identities=9% Similarity=-0.073 Sum_probs=42.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCC-C-CCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 279 ANPIIWRTLISACCARGELKL---AESITKRLIGNE-P-MHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|+..+--.+..++.+.++... ++.+++.+...+ | ........|.-+|.+.|++++|.+..+.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 555555556666666665544 777777777665 4 2334556677777788888888887777765
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.038 Score=48.92 Aligned_cols=87 Identities=11% Similarity=0.119 Sum_probs=66.4
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHhCCCCC-CchHHHHHHHHHhc-cChhH
Q 038542 265 VKEAHEFIQKM-PIEAN---PIIWRTLISACCA-----RGELKLAESITKRLIGNEPMH-ESNYVLLSHIYAKL-LRWEK 333 (475)
Q Consensus 265 ~~~A~~~~~~m-~~~p~---~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~ 333 (475)
..+|...+++. .+.|+ ...|..|...|.. .|+.++|.+.|+++++++|.. ..+++.....++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 34555556555 45565 5677778877877 489999999999999999964 88899999988884 89999
Q ss_pred HHHHHHHHHhCCCccCCC
Q 038542 334 KTKIREVMDKRGMKKIPG 351 (475)
Q Consensus 334 a~~~~~~m~~~~~~~~~~ 351 (475)
+.+.+++.........|+
T Consensus 259 a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 259 FDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHCCGGGCSS
T ss_pred HHHHHHHHHcCCCCCCCC
Confidence 999999888766543343
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.51 E-value=0.048 Score=43.27 Aligned_cols=72 Identities=14% Similarity=0.056 Sum_probs=46.9
Q ss_pred CChhHHHHHHHHHHHcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 247 PKIEHYGCMVDMLCRSG---RVKEAHEFIQKM-PIE-A--NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 247 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m-~~~-p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
++..+...+.-++++.+ +.+++..+|+.. ... | +...+-.|.-++.+.|++++|.+.++.+++.+|.+..+.
T Consensus 30 ~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~ 108 (152)
T 1pc2_A 30 VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 108 (152)
T ss_dssp CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 44555555555555555 334555555544 111 3 244556677788999999999999999999999875443
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=2.3 Score=42.39 Aligned_cols=249 Identities=13% Similarity=0.057 Sum_probs=131.1
Q ss_pred HHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 038542 49 NTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGAL 128 (475)
Q Consensus 49 ~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~ 128 (475)
+.-+..+++.+ ++......+.. +..+...-.....+....|+..+|......+-..| ......+..++..+.+.|.+
T Consensus 76 ~~~l~~l~~~~-~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~l 152 (618)
T 1qsa_A 76 SRFVNELARRE-DWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQ 152 (618)
T ss_dssp HHHHHHHHHTT-CHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhCC-CHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCC
Confidence 44455566666 88888887666 33355555566777778888877877777776655 33444556666666655544
Q ss_pred HHH--HHHHHHHHHcC-----------CCCCcc-HHHHHHHHHHhcCCHHHHHHHHHhcCCCChh---HHHHHHHHHHHc
Q 038542 129 EVG--KWVESFIEKQM-----------VNRSVG-LCNALIDMFAKCGDVDKALKLFRSMNGRTIV---SWTSVIAGLAMH 191 (475)
Q Consensus 129 ~~a--~~~~~~~~~~~-----------~~~~~~-~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~ 191 (475)
... .+=+..+...| ++++.. ....++..+.+- ..+....... .++.. .+...+.-+.+
T Consensus 153 t~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~-~~~~~~~~~~~~~~~rlar- 227 (618)
T 1qsa_A 153 DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTT-GATDFTRQMAAVAFASVAR- 227 (618)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHS-CCCHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhcc-CCChhhHHHHHHHHHHHHh-
Confidence 221 11112222211 111111 112222222211 1122222221 11111 11112222333
Q ss_pred CChHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 192 GRGLEAVALFEEMLEAGVPPDDVAFV----GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 192 g~~~~A~~l~~~m~~~g~~p~~~t~~----~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
.+.+.|..+|....... ..+..... .+.......+...++...+...... .++.....-.+..-.+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788988888876543 22332222 2333334445355666666664432 2333333444444557799999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 268 AHEFIQKMPIEA--NPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 268 A~~~~~~m~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
|...|+.|+..+ ...-.--+..++...|+.++|..+|+.+.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999995443 222233355677788999999999998875
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.08 E-value=0.63 Score=36.14 Aligned_cols=91 Identities=10% Similarity=0.031 Sum_probs=57.5
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CchHHHHHHHHHhccChhHHHHHHHHHHhCCCccCCCcc
Q 038542 278 EANPIIWRTLISACCARGE---LKLAESITKRLIGNEPMH-ESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMKKIPGST 353 (475)
Q Consensus 278 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~s 353 (475)
.|+..+--.+..++.++.+ ..+++.+++.+....|.. ......|.-+|.+.|++++|.+..+.+.+..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-------- 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-------- 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC--------
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC--------
Confidence 4555555556666666554 446777777777766643 3345567777888888888888887777532
Q ss_pred EEEECCEEEEEEeCCCCCccHHHHHHHHHHHHHHHHHcCcc
Q 038542 354 LIELDNEIYEFVCGDKSHHQSKEIYEMLDEMGRKMKKAGYV 394 (475)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~m~~~g~~ 394 (475)
|...++..+-+.+.++|.+.|+.
T Consensus 108 ------------------P~n~QA~~Lk~~Ie~~i~kdGli 130 (144)
T 1y8m_A 108 ------------------RNNKQVGALKSMVEDKIQKETLK 130 (144)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHHTTTT
T ss_pred ------------------CCcHHHHHHHHHHHHHHHHhchh
Confidence 34445555555555667777654
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.22 Score=50.78 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=50.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHH
Q 038542 289 SACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMD 342 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 342 (475)
.-|...|+++.|.++.+++...-|.+-.+|..|..+|...|+|+.|+-.++.+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 456778999999999999999999999999999999999999999999998884
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.35 E-value=0.22 Score=36.66 Aligned_cols=65 Identities=9% Similarity=-0.113 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-------CCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNE-------PMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+..-+..|...+...|+++.|...++.+++.. +.....+..|..+|.+.|+++.|...+++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 45566788999999999999999999987642 334567889999999999999999999988763
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.19 E-value=1.9 Score=38.24 Aligned_cols=114 Identities=15% Similarity=0.155 Sum_probs=64.3
Q ss_pred hcCCHHHHHHHHHhcCCCCh--hHHHHHHH-HHHHc--CC------hHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHh
Q 038542 159 KCGDVDKALKLFRSMNGRTI--VSWTSVIA-GLAMH--GR------GLEAVALFEEMLEAGVPPD---DVAFVGLLSACS 224 (475)
Q Consensus 159 ~~g~~~~A~~~~~~~~~~~~--~~~~~li~-~~~~~--g~------~~~A~~l~~~m~~~g~~p~---~~t~~~ll~~~~ 224 (475)
+.|+..+-.+.+.+....++ ..|..++. ++... |. ...|...+++..+. .|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHH
Confidence 34555555566666654444 45665554 33332 22 34566666666663 455 446666666666
Q ss_pred cC-----CCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHc-CCHHHHHHHHHhC
Q 038542 225 HC-----GLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRS-GRVKEAHEFIQKM 275 (475)
Q Consensus 225 ~~-----g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~m 275 (475)
.. |+.++|.+.|++..+- +-.-+..++....+.+++. |+.+++.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 63 7777777777776652 2111355566666666663 6666666666665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.75 E-value=0.35 Score=37.97 Aligned_cols=56 Identities=7% Similarity=0.122 Sum_probs=41.8
Q ss_pred cCCHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 262 SGRVKEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 262 ~g~~~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
.++.++|.++|+.+ ..+- ..+|-....--.++|+++.|.+++.+.+++.|.+....
T Consensus 73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~l 131 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEML 131 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHH
Confidence 36777777777766 1111 77787777778889999999999999999998764433
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.0095 Score=56.41 Aligned_cols=181 Identities=13% Similarity=0.067 Sum_probs=100.6
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHH----------------h--
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVF----------------D-- 70 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f----------------~-- 70 (475)
|...|..++.++.+.|.++.-..++.-+.+. ..+..+=+.|+-+|++.+ ++.+-++++ +
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~-rL~elEefl~~~N~A~iq~VGDrcf~e~ 158 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTN-RLAELEEFINGPNNAHIQQVGDRCYDEK 158 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSC-SSSTTTSTTSCCSSSCTHHHHHHHHHSC
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhC-cHHHHHHHHcCCCcccHHHHHHHHHHcc
Confidence 5567888999999999999888888766655 445566678999999987 655433322 1
Q ss_pred ----------ccC------------------------CCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 038542 71 ----------EMS------------------------ERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMV 116 (475)
Q Consensus 71 ----------~~~------------------------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 116 (475)
.+. ..++.||-.+-.+|...+++.-|.-.--.+.- .||. ..
T Consensus 159 lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv---hade--L~ 233 (624)
T 3lvg_A 159 MYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV---HADE--LE 233 (624)
T ss_dssp CSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC---CSSC--CS
T ss_pred CHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc---cHHH--HH
Confidence 111 01344455555555544444444333222221 1111 11
Q ss_pred HHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC-----------ChhHHHHHH
Q 038542 117 TVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR-----------TIVSWTSVI 185 (475)
Q Consensus 117 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li 185 (475)
.++..|...|-+++-..+++.-... -.....+++-|.-.|+|- +.++-.+.++....+ ....|.-++
T Consensus 234 elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~Elv 311 (624)
T 3lvg_A 234 ELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELV 311 (624)
T ss_dssp GGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHH
Confidence 2233334444444444444433311 123556777777777765 445555555443322 335688888
Q ss_pred HHHHHcCChHHHHH
Q 038542 186 AGLAMHGRGLEAVA 199 (475)
Q Consensus 186 ~~~~~~g~~~~A~~ 199 (475)
-.|.+...++.|..
T Consensus 312 fLY~~ydE~DnA~l 325 (624)
T 3lvg_A 312 FLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHTCHHHHHH
T ss_pred HHHhcchhHHHHHH
Confidence 88888888876653
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=92.55 E-value=0.0068 Score=57.37 Aligned_cols=213 Identities=12% Similarity=0.025 Sum_probs=141.0
Q ss_pred ChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 038542 44 DIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACT 123 (475)
Q Consensus 44 ~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~ 123 (475)
...+|+.|..++.+.+ .+.+|.+-| ++..|+..|..+|.+..+.|.+++-+..+...++..-.|... +.++-+|+
T Consensus 53 ~p~VWs~LgkAqL~~~-~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~ID--teLi~ayA 127 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKG-MVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVE--TELIFALA 127 (624)
T ss_dssp CCCCSSSHHHHTTTSS-SCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTT--HHHHHHHH
T ss_pred CccHHHHHHHHHHccC-chHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccH--HHHHHHHH
Confidence 3457888888888877 888887766 344577788888999999999999888887776653334333 46888888
Q ss_pred ccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC------------------------CChh
Q 038542 124 DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG------------------------RTIV 179 (475)
Q Consensus 124 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~------------------------~~~~ 179 (475)
+.+++.+-+++. -.||..-.....+-+...|.++.|.-+|..+.. .++.
T Consensus 128 k~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~k 200 (624)
T 3lvg_A 128 KTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTR 200 (624)
T ss_dssp TSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSC
T ss_pred hhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChh
Confidence 888876544333 235665566777888888888888777766532 2556
Q ss_pred HHHHHHHHHHHcC------------------------------ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCH
Q 038542 180 SWTSVIAGLAMHG------------------------------RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLV 229 (475)
Q Consensus 180 ~~~~li~~~~~~g------------------------------~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~ 229 (475)
+|-.+-.+|...+ .+++-+.+++.-... -+...-.|+-|.-.|++- .+
T Consensus 201 tWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~P 278 (624)
T 3lvg_A 201 TWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KP 278 (624)
T ss_dssp SHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CT
T ss_pred HHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CH
Confidence 7877777776644 455555555554422 245666777777777765 45
Q ss_pred HHHHHHHHHhhhhcCCCC------ChhHHHHHHHHHHHcCCHHHHHH
Q 038542 230 DKGREYFDSMKNDFGIIP------KIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p------~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
++-.+.++....+.+++- ....|.-++-.|..-..++.|..
T Consensus 279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 555555554444323322 34567888888888888776643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=92.46 E-value=0.73 Score=35.09 Aligned_cols=35 Identities=17% Similarity=0.084 Sum_probs=27.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchH
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNY 318 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~ 318 (475)
.-.|.-++.+.|+++.|.+.++.+++.+|.+..+.
T Consensus 77 lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 77 VFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHH
Confidence 34466678888999999999999999998875443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.24 E-value=3.1 Score=32.00 Aligned_cols=145 Identities=16% Similarity=0.136 Sum_probs=98.5
Q ss_pred HHHHHHHH--HHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhc
Q 038542 149 LCNALIDM--FAKCGDVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSH 225 (475)
Q Consensus 149 ~~~~li~~--y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~ 225 (475)
+...|+++ ..-.|.+++..++..+... .+..-||=+|.-....-+-+-..++++..-. -.| .+.
T Consensus 7 l~kkLmeAK~~ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFD----------is~ 73 (172)
T 1wy6_A 7 IIRKLMDAKKFLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFD----------LDK 73 (172)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSC----------GGG
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhh---hcC----------cHh
Confidence 44555554 3446888888888887654 3444555555544444454444444444322 122 134
Q ss_pred CCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHh-C-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 038542 226 CGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQK-M-PIEANPIIWRTLISACCARGELKLAESI 303 (475)
Q Consensus 226 ~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-m-~~~p~~~~~~~li~~~~~~g~~~~a~~~ 303 (475)
.|++......+-.+-. +.+....-++.+...|+-++..+++.. . ..+|++...-.+..||.+.|+..+|.++
T Consensus 74 C~NlKrVi~C~~~~n~------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVINNT------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHTTC------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHhcc------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 4666666655554432 556777888999999999999999998 4 5567888999999999999999999999
Q ss_pred HHHHHhCCC
Q 038542 304 TKRLIGNEP 312 (475)
Q Consensus 304 ~~~~~~~~p 312 (475)
+.++-+.+-
T Consensus 148 l~~AC~kG~ 156 (172)
T 1wy6_A 148 LIEACKKGE 156 (172)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHhhh
Confidence 999887763
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.15 E-value=0.91 Score=34.76 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 279 ANPIIWRTLISACCARGE---LKLAESITKRLIGNEPMH-ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 279 p~~~~~~~li~~~~~~g~---~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|+..+--.+..++.+..+ ..+++.+++.+.+.+|.. ......|+-++.+.|++++|.+..+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444444555555443 345666777666655532 34455666677777777777777776664
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.73 E-value=3.6 Score=32.32 Aligned_cols=98 Identities=18% Similarity=0.289 Sum_probs=68.4
Q ss_pred CCChhHHHHHHHHHHHcCCh------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHhcCCCHHHHHHHHHHhhh
Q 038542 175 GRTIVSWTSVIAGLAMHGRG------LEAVALFEEMLEAGVPPDDV----AFVGLLS---ACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 175 ~~~~~~~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~~----t~~~ll~---~~~~~g~~~~a~~~~~~m~~ 241 (475)
..|..+|-..+...-+.|++ ++..++|++.... ++|+.. .|.-+.- .+...+++++|.++|+.+.+
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45778888888888878888 8888888888775 666531 1111100 11223789999999999876
Q ss_pred hcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 242 DFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 242 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
. +-.- ...|.....--.+.|++..|.+++.+.
T Consensus 89 ~-hKkF-AKiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 89 N-CKKF-AFVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp H-CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H-hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4 3333 666666667777899999999999887
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=90.80 E-value=2.3 Score=30.47 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=62.5
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 204 (475)
....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-+|-. .+.|..+++..-+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456778777777776653 22222223345677899999999999999999999987655 4678888888888787
Q ss_pred HHcCCCCCHHHHHH
Q 038542 205 LEAGVPPDDVAFVG 218 (475)
Q Consensus 205 ~~~g~~p~~~t~~~ 218 (475)
...| .|....|..
T Consensus 96 a~sg-~p~~q~Fa~ 108 (116)
T 2p58_C 96 ARSQ-DPRIQTFVN 108 (116)
T ss_dssp TTCC-CHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 7776 555555543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=90.57 E-value=9.6 Score=34.47 Aligned_cols=168 Identities=14% Similarity=0.154 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHH----HHHHHcCCCCCHHHHHHHHHHHh
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALF----EEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~----~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
.|.++..=|.+.+++++|.+++..- ...+.++|+...|.++- +-..+.++++|..+...|+..+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G-----------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~ 105 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV-----------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLR 105 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4456677789999999999986542 34566778877666654 44566788999988888888777
Q ss_pred cCCCHH-HHHHHHHHhhh---hcC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038542 225 HCGLVD-KGREYFDSMKN---DFG--IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298 (475)
Q Consensus 225 ~~g~~~-~a~~~~~~m~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~ 298 (475)
....-+ .=..+.+.+.+ +.| ..-++.....+...|.+.+++.+|...|- .+..+.+..+..++.-+...+.
T Consensus 106 ~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~-- 182 (336)
T 3lpz_A 106 LFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDE-- 182 (336)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSC--
T ss_pred hCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcC--
Confidence 654311 11223333221 123 23466777888999999999999999884 3444445666666655544433
Q ss_pred HHHHHHHHHHhCCCCCCchHH-HHHHHHHhccChhHHHHHHHHHHh
Q 038542 299 LAESITKRLIGNEPMHESNYV-LLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 299 ~a~~~~~~~~~~~p~~~~~~~-~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
|.....|. ..+--|.-.++...|..+++...+
T Consensus 183 -------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 -------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp -------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 22223332 234456778899999888877665
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=90.46 E-value=2.1 Score=30.63 Aligned_cols=89 Identities=13% Similarity=0.106 Sum_probs=63.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHH
Q 038542 125 LGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEM 204 (475)
Q Consensus 125 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 204 (475)
....++|..|-+.+...+. ...+--.-+..+...|++++|..+.+....||+..|-++-. .+.|..+++..-+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3456778888777776653 22222223445678899999999999999999999987654 5788888888888888
Q ss_pred HHcCCCCCHHHHHH
Q 038542 205 LEAGVPPDDVAFVG 218 (475)
Q Consensus 205 ~~~g~~p~~~t~~~ 218 (475)
...| .|....|..
T Consensus 95 a~sg-~p~~q~Fa~ 107 (115)
T 2uwj_G 95 GGSS-DPALADFAA 107 (115)
T ss_dssp HTCS-SHHHHHHHH
T ss_pred HhCC-CHHHHHHHH
Confidence 8776 555555543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=90.38 E-value=1.3 Score=32.00 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=50.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
+.-+..+-++.+....+.|++....+.+.||.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K--~~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCchhhHHHHHH
Confidence 45567777777777888999999999999999999999999999998874 3344556777664
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=0.72 Score=43.28 Aligned_cols=68 Identities=16% Similarity=0.058 Sum_probs=54.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh-----CCCccCCC
Q 038542 284 WRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK-----RGMKKIPG 351 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~~~~ 351 (475)
...++.++...|+++++...++.+...+|.+...|..|+.+|.+.|+..+|.+.|+...+ .|+.|.|.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 345667777888899998888888888888888899999999999999999888888754 47665443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.51 E-value=1.9 Score=40.34 Aligned_cols=68 Identities=19% Similarity=0.214 Sum_probs=42.1
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh----hcCCCCChh
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN----DFGIIPKIE 250 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~ 250 (475)
..++..+...|++.+|+..+..+.... +-+...+..++.++...|+..+|.+.|+...+ ++|+.|+..
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 334556666677777776666665542 44666677777777777777777776666543 235555543
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.68 E-value=19 Score=37.66 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=9.4
Q ss_pred HHHHcCChHHHHHHHHHHHH
Q 038542 187 GLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~ 206 (475)
+|+-.|+.....++++.+..
T Consensus 569 AyaGTGn~~aIq~LL~~~~~ 588 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVS 588 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHH
T ss_pred HhcCCCCHHHHHHHHHHhcc
Confidence 34444554444445555444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=87.53 E-value=30 Score=36.19 Aligned_cols=214 Identities=11% Similarity=0.015 Sum_probs=114.0
Q ss_pred HHhCCCCHHHHHHHHhccCC----CC--hhHHHHHHHHHHHcCChhHHHHHHHHHHHCCC--CCC---H-HHH-HHHHHH
Q 038542 55 YGSCEGGIELGRKVFDEMSE----RD--SVSWSAMIGGYARLGLSTDAIDLFRQMQISGV--CPD---E-ITM-VTVLSA 121 (475)
Q Consensus 55 ~~~~gg~~~~A~~~f~~~~~----~~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p~---~-~t~-~~ll~~ 121 (475)
....| +.++++.+++.... .+ +..-..+.-+.+..|..++++.++.......- .-+ . ... ..+.-+
T Consensus 384 lIh~g-~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 384 VIHKG-NLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHTSS-CTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhccC-chHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 34456 77888888877553 12 22333444556667776778887777654310 001 1 111 112112
Q ss_pred H--hccCChHHHHHHHHHHHHcCCCCCc--cHHHHHHHHHHhcCCHHHHHHHHHhcCC--C-ChhHHHHHHHHHHHcCCh
Q 038542 122 C--TDLGALEVGKWVESFIEKQMVNRSV--GLCNALIDMFAKCGDVDKALKLFRSMNG--R-TIVSWTSVIAGLAMHGRG 194 (475)
Q Consensus 122 ~--~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~y~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~ 194 (475)
. ...++ +++...+..++...- +.. ...-+|...|.-.|+-+....++..+.+ . ++.-.-++.-++...|+.
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCG
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCCh
Confidence 2 23333 344444444443211 111 1222344445566777777777665432 2 233334444556678999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHH---HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHH
Q 038542 195 LEAVALFEEMLEAGVPPDDVAFV---GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEF 271 (475)
Q Consensus 195 ~~A~~l~~~m~~~g~~p~~~t~~---~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 271 (475)
+.+..+.+.+.... .|. .-|. ++.-+|+..|+.....+++..+..+ ...++.....+.-++...|+.+.+.++
T Consensus 541 e~~~~li~~L~~~~-dp~-vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 541 ELADDLITKMLASD-ESL-LRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGHHHHHHHHHCS-CHH-HHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred HHHHHHHHHHHhCC-CHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 99988888887631 222 2232 3445778889988888899888863 223333333333344446666666666
Q ss_pred HHhC
Q 038542 272 IQKM 275 (475)
Q Consensus 272 ~~~m 275 (475)
++.+
T Consensus 617 v~~L 620 (963)
T 4ady_A 617 VQLL 620 (963)
T ss_dssp TTTG
T ss_pred HHHH
Confidence 6644
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.43 E-value=11 Score=41.01 Aligned_cols=163 Identities=9% Similarity=0.013 Sum_probs=91.7
Q ss_pred HHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 038542 50 TLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALE 129 (475)
Q Consensus 50 ~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~ 129 (475)
.++..+.+.+ ..+.|.++..-.++ +...--.+..+|...|++++|.+.|.+.-. |+..+.... ....
T Consensus 817 ~l~~~l~~~~-~~~~~~~l~~~~~~-~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~----------~~~~ 883 (1139)
T 4fhn_B 817 ELVEKLFLFK-QYNACMQLIGWLNS-DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF----------AVLR 883 (1139)
T ss_dssp HHHHHHHHHS-CTTHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC----------SSHH
T ss_pred HHHHHHHHhh-hHHHHHHHhhhccC-CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh----------hhhc
Confidence 3444455555 66666665544433 444445566777888888888888876532 222211100 0000
Q ss_pred HHHHHHHHHHHcC--CCCCccHHHHHHHHHHhcCCHHHHHHHHHh----cCCCCh----hHHHHHHHHHHHcCChHHHHH
Q 038542 130 VGKWVESFIEKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRS----MNGRTI----VSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 130 ~a~~~~~~~~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~----~~~~~~----~~~~~li~~~~~~g~~~~A~~ 199 (475)
. ...+.... ...-...|..++..+-+.|.++.+.++-.. ....+. ..|..+..++...|++++|..
T Consensus 884 ~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~ 959 (1139)
T 4fhn_B 884 E----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHV 959 (1139)
T ss_dssp H----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGH
T ss_pred c----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHH
Confidence 0 00111110 011223466677777777777776655432 222222 258888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHH
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDK 231 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~ 231 (475)
.+-.+-....+ ...+..|+...+..|..+.
T Consensus 960 aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~ 989 (1139)
T 4fhn_B 960 ALMVLSTTPLK--KSCLLDFVNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHSSSC--HHHHHHHHHHHHHHCCHHH
T ss_pred HHHhCCCHHHH--HHHHHHHHHHHHhCCChhh
Confidence 98887665433 4456667776666666544
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.86 E-value=22 Score=36.28 Aligned_cols=126 Identities=15% Similarity=0.116 Sum_probs=75.4
Q ss_pred HHHHHHHHHHhCCCC-HHHHHHHHhccCCCCh--hH--HHHHHHHHHHcC-ChhHHHHHHHHHHHC------CCCCCHH-
Q 038542 47 VQNTLVHMYGSCEGG-IELGRKVFDEMSERDS--VS--WSAMIGGYARLG-LSTDAIDLFRQMQIS------GVCPDEI- 113 (475)
Q Consensus 47 ~~~~li~~~~~~gg~-~~~A~~~f~~~~~~~~--~~--~~~li~~~~~~g-~~~~A~~~~~~m~~~------g~~p~~~- 113 (475)
....|+....-.+ + .+.|..+|+++.+.++ .+ ..+++..+.+.+ +--+|.+++.+..+. ...+...
T Consensus 250 L~~~Ll~~~~~t~-~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 250 LMYSLKSFIAITP-SLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHHTCG-GGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHHcccc-cHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3344555555555 4 5778888887764332 22 122333322222 233455555554321 1222111
Q ss_pred ----------HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC
Q 038542 114 ----------TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN 174 (475)
Q Consensus 114 ----------t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~ 174 (475)
....-..-|...|+++.|..+-.+.+... +.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11112233667899999999999988773 4467789999999999999999999998885
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.48 E-value=23 Score=33.69 Aligned_cols=94 Identities=13% Similarity=0.097 Sum_probs=56.3
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHhcCCCHHHHHHHHHHhhhh-cCCCCC----hhH
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEA--GVPPD---DVAFVGLLSACSHCGLVDKGREYFDSMKND-FGIIPK----IEH 251 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~p~----~~~ 251 (475)
..|...|...|++.+|.+++..+... |..+. ...+...++.|...+++..|..+++.+... ....+. ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44566677777777777777776532 21111 124555566777777888877777766421 111222 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m 275 (475)
|.+++..+...+++.+|.+.|.+.
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Confidence 566677777777777777666555
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.20 E-value=18 Score=32.35 Aligned_cols=169 Identities=11% Similarity=0.061 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 038542 47 VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDL----FRQMQISGVCPDEITMVTVLSAC 122 (475)
Q Consensus 47 ~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~g~~p~~~t~~~ll~~~ 122 (475)
.|.++..-|.+.+ ++++|.+++.. -...+.+.|+...|-++ .+-..+.+++++......++..+
T Consensus 35 ~~Rtl~~Ry~~~~-~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 35 TLRTIANRYVRSK-SYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhc-CHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4666777788888 89999887643 24456667877666554 45556678888888888888776
Q ss_pred hccC--Ch---HHHHHHHHHHHHcCC--CCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHc---C
Q 038542 123 TDLG--AL---EVGKWVESFIEKQMV--NRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMH---G 192 (475)
Q Consensus 123 ~~~~--~~---~~a~~~~~~~~~~~~--~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---g 192 (475)
.... .. +-......+-.+.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++--+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 5533 11 222233333333332 236778888999999999999999988743323455555555544443 3
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhh
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKND 242 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~ 242 (475)
...++ |...-.+++. |.-.+++..|..+|+...+.
T Consensus 183 ~~~e~--------------dlf~~RaVL~-yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV--------------AEFFSRLVFN-YLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH--------------HHHHHHHHHH-HHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHHHHHHHH-HHHhcCHHHHHHHHHHHHHH
Confidence 33222 1121222332 34567888888887766543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=86.17 E-value=12 Score=40.52 Aligned_cols=123 Identities=7% Similarity=-0.101 Sum_probs=80.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCC-----------------
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEA----------------- 279 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p----------------- 279 (475)
++..+...+..+.+.++..-. +.++...-.+..+|..+|++++|.+.|++. ++.+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccc
Confidence 344444555555555433322 224444455667788899999999999887 1111
Q ss_pred ------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCCc----hHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 280 ------NPIIWRTLISACCARGELKLAESITKRLIGNE-PMHES----NYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 280 ------~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-p~~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
-..-|..++..+.+++.++.+.++.+.+++.. +++.. .|..+...+...|++++|...+-.+.....+
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 11235667778888899999998888877654 33321 4677888889999999999888777655443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=86.02 E-value=3 Score=31.84 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
+.-+..+-++.+....+.|++....+.|.+|.+.+++..|.++|+.++.+ ..+....|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34456666777777789999999999999999999999999999999874 4444666777764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.64 E-value=25 Score=33.39 Aligned_cols=93 Identities=11% Similarity=0.146 Sum_probs=65.2
Q ss_pred HHHHHHHhcCCCHHHHHHHHHHhhhh-cCCCCC---hhHHHHHHHHHHHcCCHHHHHHHHHhC-----CCCCCH----HH
Q 038542 217 VGLLSACSHCGLVDKGREYFDSMKND-FGIIPK---IEHYGCMVDMLCRSGRVKEAHEFIQKM-----PIEANP----II 283 (475)
Q Consensus 217 ~~ll~~~~~~g~~~~a~~~~~~m~~~-~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m-----~~~p~~----~~ 283 (475)
..|...+...|++.+|..++..+..+ ++..+. .+.+...+..|...+++.+|..++.++ ...+++ ..
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45777888899999999999887654 232222 356777788899999999999888876 122222 34
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 284 WRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 284 ~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
+...+..+...+++.+|.+.|.++.+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 55566666777888888777776653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=85.42 E-value=7.5 Score=28.04 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=37.8
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 274 KMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 274 ~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
.+.+-|++.+..+.+.||++.+++..|.++++-+...-.+....|..++.
T Consensus 38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~lq 87 (109)
T 1v54_E 38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQ 87 (109)
T ss_dssp TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHH
T ss_pred ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHHH
Confidence 33677899999999999999999999999999887554333445655443
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.98 E-value=22 Score=32.15 Aligned_cols=168 Identities=11% Similarity=0.016 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHH----HHHHHCCCCCCHHHHHHHHHHH
Q 038542 47 VQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLF----RQMQISGVCPDEITMVTVLSAC 122 (475)
Q Consensus 47 ~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~----~~m~~~g~~p~~~t~~~ll~~~ 122 (475)
+|.++..-|.+.+ ++++|.+++.. -...+.+.|+...|-++- +-..+.++++|..+...++..+
T Consensus 37 ~~RTi~~Ry~~~k-~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 37 ETRLVAARYSKQG-NWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhc-CHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4556667788888 99999987643 244566677776655554 5555667888888887787777
Q ss_pred hccCChH-HHHHHHHHH----HHcC--CCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChH
Q 038542 123 TDLGALE-VGKWVESFI----EKQM--VNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGL 195 (475)
Q Consensus 123 ~~~~~~~-~a~~~~~~~----~~~~--~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 195 (475)
.....-+ .=..+...+ .+.| ..-|+.....+...|.+.|++.+|+.-|---.++.+..+..++--+...+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~~~ 184 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDESH 184 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSCGG
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcCCc
Confidence 6554311 112233333 3333 23467788888999999999999999885322223356655555554444321
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh
Q 038542 196 EAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN 241 (475)
Q Consensus 196 ~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~ 241 (475)
.+|...-.+++. |...+++..|...++...+
T Consensus 185 --------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 185 --------------TAPLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp --------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred --------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 122233333443 4446788888777666554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.97 E-value=4 Score=32.62 Aligned_cols=112 Identities=11% Similarity=-0.011 Sum_probs=57.1
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCCh-------hHHHHHHHHHHHcCCHHHHHHHHHhC-------CCCCCH
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKI-------EHYGCMVDMLCRSGRVKEAHEFIQKM-------PIEANP 281 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m-------~~~p~~ 281 (475)
+..-+......|.++.|+-+.+.+....+..|+. .++..+.+++...|++..|...|++. ...++.
T Consensus 23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~ 102 (167)
T 3ffl_A 23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV 102 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 3444556666777777776666654432233331 24455566666777777776666653 111111
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHH
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m 341 (475)
...+. ....... -.. .+.+...-.-+..+|.+.|++++|..+++.+
T Consensus 103 --~~~~~----~~ss~p~-------s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 103 --RPSTG----NSASTPQ-------SQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp ---------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred --ccccc----ccCCCcc-------ccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 10000 0000000 000 0122234556888999999999999998654
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=83.12 E-value=30 Score=32.21 Aligned_cols=23 Identities=30% Similarity=0.134 Sum_probs=11.8
Q ss_pred HHHHHHHcCChHHHHHHHHHHHH
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
++..|...|++.+|.+++.++.+
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~ 127 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLR 127 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Confidence 44445555555555555555444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=82.65 E-value=26 Score=31.31 Aligned_cols=169 Identities=13% Similarity=0.107 Sum_probs=106.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHH----HHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 149 LCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVAL----FEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 149 ~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l----~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
.|.++..=|.+.+++++|.+++..- ...+.++|+...|.++ .+-..+.+.+++......++..+.
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~g-----------a~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~ 103 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQG-----------ALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIA 103 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHH-----------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 4566777789999999999986652 3456677887776665 444556788999888888887776
Q ss_pred cCCCHH-HHHHHHHHhhh---hcC--CCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---C
Q 038542 225 HCGLVD-KGREYFDSMKN---DFG--IIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCAR---G 295 (475)
Q Consensus 225 ~~g~~~-~a~~~~~~m~~---~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~---g 295 (475)
.-..-+ .=.++++.+.+ +.| ..-++.....+...|.+.|++.+|+..|-. +..-+...+..++.-+... |
T Consensus 104 ~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~-~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 104 ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFML-GTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHh-CCCccHHHHHHHHHHHHHhcCCC
Confidence 532111 11233333332 112 223677888899999999999999988763 2111455666665555444 4
Q ss_pred CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 296 ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 296 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
...++.-+.- ..+--|.-.|+...|..+++...+
T Consensus 183 ~~~e~dlf~~--------------RaVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 183 EDSTVAEFFS--------------RLVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp CHHHHHHHHH--------------HHHHHHHHTTBHHHHHHHHHHHHH
T ss_pred CcchHHHHHH--------------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 4333322211 223345677899999999887754
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.39 E-value=8.7 Score=30.67 Aligned_cols=55 Identities=13% Similarity=-0.003 Sum_probs=30.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcC-----CCCh-------hHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 152 ALIDMFAKCGDVDKALKLFRSMN-----GRTI-------VSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 152 ~li~~y~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
.-+......|.++.|+-+.+.+. ++++ .+...+..++...|++..|...|++..+
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 34556666677777666655432 1221 2344455666666666666666666533
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=81.16 E-value=13 Score=26.70 Aligned_cols=87 Identities=9% Similarity=-0.043 Sum_probs=61.5
Q ss_pred CCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038542 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103 (475)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 103 (475)
-..++|..+-+.+...+- ...+--.-+..+...| ++++|..+.+.+.-||.+.|-+|-.. +.|...++..-+.++
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG-~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQG-RYQEALAFAHGNPWPALEPWFALCEW--HLGLGAALDRRLAGL 94 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT-CHHHHHGGGTTCCCGGGHHHHHHHHH--HTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch-hHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 356788888888877653 3322222233345566 99999999999999999999887654 678888888888788
Q ss_pred HHCCCCCCHHHHH
Q 038542 104 QISGVCPDEITMV 116 (475)
Q Consensus 104 ~~~g~~p~~~t~~ 116 (475)
...| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7776 45544443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=80.50 E-value=14 Score=26.60 Aligned_cols=87 Identities=15% Similarity=0.037 Sum_probs=60.8
Q ss_pred CCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHH
Q 038542 24 GDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQM 103 (475)
Q Consensus 24 ~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 103 (475)
-..++|..+-+.+...+- ...+--.-+..+...| ++++|..+.+.+.-||.+.|-+|-.. +.|...++..-+.++
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG-~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRG-DYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTT-CHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcch-hHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 456788888888877653 2222222233345566 99999999999999999999887655 667778888877788
Q ss_pred HHCCCCCCHHHHH
Q 038542 104 QISGVCPDEITMV 116 (475)
Q Consensus 104 ~~~g~~p~~~t~~ 116 (475)
...| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7766 45444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 475 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.86 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.61 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.58 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.24 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.09 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.08 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.08 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.07 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.97 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.9 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.62 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.59 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.57 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.52 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.5 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.49 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.47 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.44 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.36 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.3 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.27 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.25 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.24 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.23 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.13 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.12 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.12 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.11 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.03 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.03 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.95 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.86 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.84 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.67 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.66 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.65 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.57 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.53 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.49 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.46 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.42 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.32 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.32 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.14 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.07 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.69 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.35 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.24 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.57 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.45 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.19 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.85 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 90.82 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 89.53 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.96 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 82.27 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.7e-19 Score=168.83 Aligned_cols=322 Identities=14% Similarity=0.069 Sum_probs=262.1
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCC--C-ChhHHHHHHHHHHHcCC
Q 038542 16 VLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSE--R-DSVSWSAMIGGYARLGL 92 (475)
Q Consensus 16 ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~--~-~~~~~~~li~~~~~~g~ 92 (475)
+...+.+.|++++|.+.++.+.+.. +.+..++..+...|.+.| ++++|...|++..+ | +..+|..+...|.+.|+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCR-RLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence 3456678899999999999998874 556788899999999999 99999999998753 3 67899999999999999
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHH----------------------------------HhccCChHHHHHHHHHH
Q 038542 93 STDAIDLFRQMQISGVCPDEITMVTVLSA----------------------------------CTDLGALEVGKWVESFI 138 (475)
Q Consensus 93 ~~~A~~~~~~m~~~g~~p~~~t~~~ll~~----------------------------------~~~~~~~~~a~~~~~~~ 138 (475)
+++|++.+........ .+.......... ....+....+...+...
T Consensus 83 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKA 161 (388)
T ss_dssp HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred cccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHh
Confidence 9999999999887532 222222222222 22233334444444444
Q ss_pred HHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHH
Q 038542 139 EKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVA 215 (475)
Q Consensus 139 ~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 215 (475)
.... +.+...+..+...+...|++++|...+++.. ..+..+|..+...+...|++++|+..+++....+ +.+...
T Consensus 162 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 162 IETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred hccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 4432 3355677788899999999999999998764 3466789999999999999999999999998864 556778
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHh
Q 038542 216 FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCA 293 (475)
Q Consensus 216 ~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~ 293 (475)
+..+...+...|++++|...|+...+ -.+.+...+..+..++...|++++|.+.++.. ..+.+...+..+...+..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHH
Confidence 88899999999999999999999886 33445788999999999999999999999887 333478889999999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 294 RGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 294 ~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.|++++|...++++++..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999988753
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=9.4e-19 Score=165.08 Aligned_cols=315 Identities=11% Similarity=0.037 Sum_probs=261.5
Q ss_pred CcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC---Ch--------
Q 038542 9 NKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER---DS-------- 77 (475)
Q Consensus 9 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~---~~-------- 77 (475)
+...+..+...+...|++++|...++.+++.. +.+..++..+...|.+.| ++++|...+....+. +.
T Consensus 32 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 109 (388)
T d1w3ba_ 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERG-QLQEAIEHYRHALRLKPDFIDGYINLAA 109 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhc-cccccccccccccccccccccccccccc
Confidence 45677888889999999999999999999875 556788999999999999 999999998776421 11
Q ss_pred --------------------------hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 038542 78 --------------------------VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131 (475)
Q Consensus 78 --------------------------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 131 (475)
..+..........+....+...+.+..... +-+...+..+...+...++++.|
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 188 (388)
T d1w3ba_ 110 ALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLA 188 (388)
T ss_dssp HHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHH
Confidence 123333344445555666666666665532 23456777778888999999999
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
...+...++.. +.+..++..+...|...|++++|...|++.. ..+...|..+...+.+.|++++|+..|++..+..
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 267 (388)
T d1w3ba_ 189 IHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999998874 3366788899999999999999999998765 3466788889999999999999999999998863
Q ss_pred CCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 038542 209 VPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRT 286 (475)
Q Consensus 209 ~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~ 286 (475)
+-+..++..+..++...|++++|...++.... ..+.+...+..+...+.+.|++++|.+.|++. ...| +..+|..
T Consensus 268 -p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 344 (388)
T d1w3ba_ 268 -PHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSN 344 (388)
T ss_dssp -SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 34567888999999999999999999999887 45667788999999999999999999999986 5666 5778999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 287 LISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 287 li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
+...+...|++++|...++++++++|.++.+|..|+.+|.+.||
T Consensus 345 la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 345 LASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999998875
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.61 E-value=9.2e-14 Score=127.56 Aligned_cols=250 Identities=12% Similarity=-0.020 Sum_probs=162.6
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCC
Q 038542 83 MIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGD 162 (475)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~ 162 (475)
....+.+.|++++|+..|+++.+.. +-+..+|..+..++...|+++.|...+.++++... .+...+..+...|...|+
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccccccc
Confidence 3444555566666666665555532 11344555555555555666666655555555432 234455555555666666
Q ss_pred HHHHHHHHHhcCC--C----------------ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC-CCCCHHHHHHHHHHH
Q 038542 163 VDKALKLFRSMNG--R----------------TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG-VPPDDVAFVGLLSAC 223 (475)
Q Consensus 163 ~~~A~~~~~~~~~--~----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~ll~~~ 223 (475)
+++|.+.+++... + +.......+..+...+...+|.+.|.+..... -.++...+..+...+
T Consensus 103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~ 182 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF 182 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence 6666555554321 0 01111122333445567788888888877643 234567788888899
Q ss_pred hcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 038542 224 SHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAE 301 (475)
Q Consensus 224 ~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~ 301 (475)
...|++++|...|+..... .+-+...|..+...|.+.|++++|.+.|++. ...| +..+|..+..+|...|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~ 260 (323)
T d1fcha_ 183 NLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAV 260 (323)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999998763 2345778889999999999999999999987 4445 6788999999999999999999
Q ss_pred HHHHHHHhCCCCCCch-----------HHHHHHHHHhccChhHHHH
Q 038542 302 SITKRLIGNEPMHESN-----------YVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~-----------~~~l~~~~~~~g~~~~a~~ 336 (475)
..|+++++..|.+... +..+..++...|+++.+..
T Consensus 261 ~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~ 306 (323)
T d1fcha_ 261 EHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 306 (323)
T ss_dssp HHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999877766443 3445556666666665543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=1.2e-13 Score=126.87 Aligned_cols=223 Identities=11% Similarity=-0.014 Sum_probs=183.9
Q ss_pred HHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCCh
Q 038542 118 VLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRG 194 (475)
Q Consensus 118 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~ 194 (475)
....+.+.|++++|...|+.+++.. +.+..+|..+..+|...|++++|...|.+.. ..+...|..+...|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccc
Confidence 4555789999999999999999874 3367789999999999999999999998764 34678899999999999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHH----------------HHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 195 LEAVALFEEMLEAGVPPDDVA----------------FVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 195 ~~A~~l~~~m~~~g~~p~~~t----------------~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
++|.+.+++..... |+... ....+..+...+..+++...+....+.....++...+..+...
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~ 181 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL 181 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence 99999999988742 32111 1111223334466778888888777642334567788889999
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTK 336 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~ 336 (475)
+...|++++|...|++. ...| +..+|..+...+...|++++|.+.++++++.+|.++.++..++.+|.+.|++++|.+
T Consensus 182 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~ 261 (323)
T d1fcha_ 182 FNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVE 261 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999987 3344 688899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 038542 337 IREVMDK 343 (475)
Q Consensus 337 ~~~~m~~ 343 (475)
.+++..+
T Consensus 262 ~~~~al~ 268 (323)
T d1fcha_ 262 HFLEALN 268 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998876
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=2e-09 Score=98.75 Aligned_cols=261 Identities=15% Similarity=-0.015 Sum_probs=173.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-----CccHHHHH
Q 038542 83 MIGGYARLGLSTDAIDLFRQMQISGVCPD----EITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-----SVGLCNAL 153 (475)
Q Consensus 83 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l 153 (475)
....+...|++++|++++++........+ ...+..+...+...|++++|...+....+..... ....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34556677777777777777766421111 1244455566777777777777777766432111 12344556
Q ss_pred HHHHHhcCCHHHHHHHHHhcC-------CC----ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC----CCCCHHHHHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMN-------GR----TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG----VPPDDVAFVG 218 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~-------~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~ 218 (475)
...|...|++..|...+.... .+ ....+..+...+...|+++.+...+....... ......++..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 667777888887777766532 11 11345556677888888888888888876542 2223445556
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-----hhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-----CHHHHHHH
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPK-----IEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-----NPIIWRTL 287 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-----~~~~~~~l 287 (475)
....+...+....+...+............ ...+..+...+...|++++|...++.. ...| ....+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 666777788888888877665543222111 234555667788889999999998887 2211 34556778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHh------CCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 288 ISACCARGELKLAESITKRLIG------NEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 288 i~~~~~~g~~~~a~~~~~~~~~------~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..++...|++++|...++++.. ..|....++..+..+|...|++++|.+.+++..+
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8889999999999999998763 2255556788899999999999999999987654
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.12 E-value=5.2e-09 Score=94.55 Aligned_cols=185 Identities=9% Similarity=0.028 Sum_probs=132.4
Q ss_pred ChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CC-hhHHHHHHHHHHHcCChHHHHHHHH
Q 038542 127 ALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RT-IVSWTSVIAGLAMHGRGLEAVALFE 202 (475)
Q Consensus 127 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~-~~~~~~li~~~~~~g~~~~A~~l~~ 202 (475)
..+.+..+++..++...+.+...+..++..+.+.|+++.|..+|+++.. .+ ...|...+....+.|+.+.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 4467777888877665555666777788888888888888888887643 13 3468888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHH-HHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CC
Q 038542 203 EMLEAGVPPDDVAFVGLLS-ACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PI 277 (475)
Q Consensus 203 ~m~~~g~~p~~~t~~~ll~-~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~ 277 (475)
++.+.+. .+...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|++++|..+|++. +.
T Consensus 159 ~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 8877642 23333333332 234467888888888888863 3445677888888888888888888888876 33
Q ss_pred CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 038542 278 EA--NPIIWRTLISACCARGELKLAESITKRLIGNEPMH 314 (475)
Q Consensus 278 ~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~ 314 (475)
.| ....|...+.--..+|+.+.+..+.+++.+..|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 33 24578888877778888888888888887766654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=1.3e-09 Score=95.69 Aligned_cols=200 Identities=13% Similarity=-0.020 Sum_probs=105.4
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCC---CChhHHHHHHHHHHH
Q 038542 114 TMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNG---RTIVSWTSVIAGLAM 190 (475)
Q Consensus 114 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~ 190 (475)
++..+...+.+.|++++|...|...++.. +.++.+++.+..+|.+.|++++|...|++..+ .+..+|..+...|..
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~ 117 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY 117 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHHH
Confidence 33344445555566666666666555543 22455566666666666666666666665532 234556666666666
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC----HH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR----VK 266 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~----~~ 266 (475)
.|++++|.+.|++..+.. +.+......+..++.+.+..+....+...... ..++...++ ++..+..... .+
T Consensus 118 ~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 118 GGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SDKEQWGWN-IVEFYLGNISEQTLME 192 (259)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SCCCSTHHH-HHHHHTTSSCHHHHHH
T ss_pred HhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cchhhhhhh-HHHHHHHHHHHHHHHH
Confidence 677777777776666543 22333333333334444444444444333332 112222222 1222211111 11
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHH
Q 038542 267 EAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYV 319 (475)
Q Consensus 267 ~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~ 319 (475)
.+...+... ...| ...+|..+...+...|++++|...+++++..+|.+...|.
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 193 RLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred HHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 222111111 1112 2346777888899999999999999999999998755443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.08 E-value=1.2e-08 Score=92.36 Aligned_cols=208 Identities=10% Similarity=0.054 Sum_probs=125.2
Q ss_pred hHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccC-ChHHHHHHHHHHHHcCCCCCccHHHHHHH
Q 038542 78 VSWSAMIGGYARLGLSTDAIDLFRQMQISGVCP-DEITMVTVLSACTDLG-ALEVGKWVESFIEKQMVNRSVGLCNALID 155 (475)
Q Consensus 78 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 155 (475)
..|+.+...+.+.+.+++|+++++++.+. .| +...|+....++...+ ++++|...++.+++... -+..+|+.+..
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p-~~~~a~~~~~~ 120 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRV 120 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-hhhhHHHHHhH
Confidence 35666666777777777777777777764 44 3445566666666655 47777777777776642 35667777777
Q ss_pred HHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCC----
Q 038542 156 MFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGL---- 228 (475)
Q Consensus 156 ~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~---- 228 (475)
.+.+.|++++|+..|+++. ..+...|+.+...+.+.|++++|++.++++.+.. +-+...|+.+...+.+.+.
T Consensus 121 ~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 121 LVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence 7777777777777777664 2356777777777777777777777777777753 3345556555544444433
Q ss_pred --HHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHH
Q 038542 229 --VDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEANPIIWRTLISACC 292 (475)
Q Consensus 229 --~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p~~~~~~~li~~~~ 292 (475)
+++|...+....+. .+.+...|..+...+...| .+++.+.++.. +...+...+..+...|.
T Consensus 200 ~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~ 266 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE 266 (315)
T ss_dssp HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence 45666666665542 2234455555544443332 34444444433 22224445555555443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=2.4e-10 Score=104.89 Aligned_cols=257 Identities=10% Similarity=-0.074 Sum_probs=182.1
Q ss_pred CHHHHHHHHhccCC--C-ChhHHHHHHHH----------HHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-
Q 038542 61 GIELGRKVFDEMSE--R-DSVSWSAMIGG----------YARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLG- 126 (475)
Q Consensus 61 ~~~~A~~~f~~~~~--~-~~~~~~~li~~----------~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~- 126 (475)
..++|+++++...+ | +...|+..-.. +...|++++|+.+++...+.. +-+...+..+..++...+
T Consensus 44 ~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~ 122 (334)
T d1dcea1 44 LDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPE 122 (334)
T ss_dssp CSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSS
T ss_pred ccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhcc
Confidence 45777777776643 3 33445443333 233455788999999988753 235556666666665555
Q ss_pred -ChHHHHHHHHHHHHcCCCCCccHH-HHHHHHHHhcCCHHHHHHHHHhcCCC---ChhHHHHHHHHHHHcCChHHHHHHH
Q 038542 127 -ALEVGKWVESFIEKQMVNRSVGLC-NALIDMFAKCGDVDKALKLFRSMNGR---TIVSWTSVIAGLAMHGRGLEAVALF 201 (475)
Q Consensus 127 -~~~~a~~~~~~~~~~~~~~~~~~~-~~li~~y~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~ 201 (475)
+++++...+..+.+.... +...+ ......+...|.+++|...++..... +..+|+.+...+.+.|++++|...+
T Consensus 123 ~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~ 201 (334)
T d1dcea1 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (334)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 578999999998887433 44444 34557788889999999999988753 6688999999999999988887666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-
Q 038542 202 EEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA- 279 (475)
Q Consensus 202 ~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p- 279 (475)
+..... .|+.. .+...+...+..+++...+..... ..+++...+..+...+...|+.++|...+.+. ...|
T Consensus 202 ~~~~~~--~~~~~---~~~~~~~~l~~~~~a~~~~~~~l~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 274 (334)
T d1dcea1 202 RLPENV--LLKEL---ELVQNAFFTDPNDQSAWFYHRWLL--GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKW 274 (334)
T ss_dssp SSCHHH--HHHHH---HHHHHHHHHCSSCSHHHHHHHHHH--SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHhHHh--HHHHH---HHHHHHHHhcchhHHHHHHHHHHH--hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch
Confidence 554442 22222 222334445666667777776665 44555666777788888889999999988877 5555
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
+..+|..+...+...|+.++|.+.++++++.+|.+...|..|...+.
T Consensus 275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 275 CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHHh
Confidence 56778889999999999999999999999999988777777766655
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.7e-08 Score=92.27 Aligned_cols=280 Identities=10% Similarity=-0.048 Sum_probs=162.4
Q ss_pred HHhCCCCHHHHHHHHhccCC--CC------hhHHHHHHHHHHHcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHH
Q 038542 55 YGSCEGGIELGRKVFDEMSE--RD------SVSWSAMIGGYARLGLSTDAIDLFRQMQIS----GVCPD-EITMVTVLSA 121 (475)
Q Consensus 55 ~~~~gg~~~~A~~~f~~~~~--~~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~ll~~ 121 (475)
+...| ++++|.++|++..+ |+ ...++.+...|...|++++|+..|++.... +..+. ..++..+...
T Consensus 22 ~~~~g-~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 100 (366)
T d1hz4a_ 22 AINDG-NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 100 (366)
T ss_dssp HHHTT-CHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCC-CHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH
Confidence 34444 66666555554321 11 234555566666666666666666655432 11111 1233344445
Q ss_pred HhccCChHHHHHHHHHHHHc----CCCCC---ccHHHHHHHHHHhcCCHHHHHHHHHhcCC----C----ChhHHHHHHH
Q 038542 122 CTDLGALEVGKWVESFIEKQ----MVNRS---VGLCNALIDMFAKCGDVDKALKLFRSMNG----R----TIVSWTSVIA 186 (475)
Q Consensus 122 ~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~li~~y~~~g~~~~A~~~~~~~~~----~----~~~~~~~li~ 186 (475)
+...|++..+...+...... +.+.. ...+..+...|...|+++.|...+..... . ...++..+..
T Consensus 101 ~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (366)
T d1hz4a_ 101 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence 56666776666666655431 11111 12344556677777777777777765431 1 2244555566
Q ss_pred HHHHcCChHHHHHHHHHHHHc----CCCCC--HHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC---ChhHHHHHHH
Q 038542 187 GLAMHGRGLEAVALFEEMLEA----GVPPD--DVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP---KIEHYGCMVD 257 (475)
Q Consensus 187 ~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~ 257 (475)
.+...++..++...+.+.... +..+. ...+..+...+...|+++.|...+...... .... ....+..+..
T Consensus 181 ~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~la~ 259 (366)
T d1hz4a_ 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKP-EFANNHFLQGQWRNIAR 259 (366)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCC-CCTTCGGGHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-ccccchHHHHHHHHHHH
Confidence 677778888887777665442 11111 234455666777888899888888876642 2111 2344556778
Q ss_pred HHHHcCCHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---------CchHHH
Q 038542 258 MLCRSGRVKEAHEFIQKM-------PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMH---------ESNYVL 320 (475)
Q Consensus 258 ~~~~~g~~~~A~~~~~~m-------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~---------~~~~~~ 320 (475)
.+...|++++|...+++. +..| ...+|..+...+...|++++|.+.+++.+++.+.. ......
T Consensus 260 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~ 339 (366)
T d1hz4a_ 260 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQ 339 (366)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHH
Confidence 888889999888888765 3334 34567778888999999999999999887654211 112333
Q ss_pred HHHHHHhccChhHHHH
Q 038542 321 LSHIYAKLLRWEKKTK 336 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~ 336 (475)
++..+...++.+++.+
T Consensus 340 ~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 340 QLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHTTCSCHHHH
T ss_pred HHHHHHhcCCChHHHH
Confidence 4444555566655543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.06 E-value=6.5e-09 Score=94.12 Aligned_cols=211 Identities=10% Similarity=0.090 Sum_probs=166.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcC-CHHHHHHHHHhcC---CCChhHHHHHHHHH
Q 038542 113 ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCG-DVDKALKLFRSMN---GRTIVSWTSVIAGL 188 (475)
Q Consensus 113 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~ 188 (475)
..++.+-..+.+.+..++|.+.++.+++.. +.+..+|+....++...| ++++|+..+++.. ..+..+|+.+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 456666666788899999999999999985 336778888888988877 5999999998864 44778999999999
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCC----
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGR---- 264 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~---- 264 (475)
.+.|++++|++.++++.+.. +-+...|..+...+.+.|++++|.+.++.+.+. -+.+...|+.+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999864 456889999999999999999999999999873 23356677777777777665
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc--hHHHHHHHHHhc
Q 038542 265 --VKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHES--NYVLLSHIYAKL 328 (475)
Q Consensus 265 --~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~--~~~~l~~~~~~~ 328 (475)
+++|.+.+.++ ...| +...|..+...+.. ...+++.+.++.+.+..|.... .+..++..|...
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 57888888776 4445 67888877666544 4468888999998888776544 445666666543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=3.4e-08 Score=89.04 Aligned_cols=182 Identities=9% Similarity=0.046 Sum_probs=144.4
Q ss_pred CCHHHHHHHHHhcC----CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 161 GDVDKALKLFRSMN----GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 161 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
+..++|..+|++.. ..+...|...+..+...|+.++|..+|+++.+.........|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44678888888753 33667888889999999999999999999988643333557888999999999999999999
Q ss_pred HHhhhhcCCCCChhHHHHHHHH-HHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 237 DSMKNDFGIIPKIEHYGCMVDM-LCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 237 ~~m~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
+.+.+. .+.+...|...... +...|+.+.|..+|+.+ ....+...|...+..+...|+++.|..+|++++...|.
T Consensus 158 ~~al~~--~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHTS--TTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHHh--CCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 998863 33344555554444 34468999999999988 22336889999999999999999999999999988765
Q ss_pred CCc----hHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 314 HES----NYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 314 ~~~----~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
++. .|...+..-...|+.+.+..+.+++.+.
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 543 5777777778889999999999988663
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.97 E-value=2.8e-09 Score=93.56 Aligned_cols=194 Identities=11% Similarity=-0.010 Sum_probs=135.9
Q ss_pred cHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 038542 148 GLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACS 224 (475)
Q Consensus 148 ~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~ 224 (475)
.++..+..+|.+.|++++|...|++.. ..++.+|+.+..+|.+.|++++|+..|++..+.. +-+..++..+..++.
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 466678899999999999999999865 3578899999999999999999999999999864 334667888999999
Q ss_pred cCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhc----CCHHH
Q 038542 225 HCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEANPIIWRTLISACCAR----GELKL 299 (475)
Q Consensus 225 ~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p~~~~~~~li~~~~~~----g~~~~ 299 (475)
..|++++|...|+...+. . +.+......+...+.+.+..+.+..+.... ...++...+. ++..+... +..+.
T Consensus 117 ~~g~~~~A~~~~~~al~~-~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 193 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQD-D-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN-IVEFYLGNISEQTLMER 193 (259)
T ss_dssp HTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHH-HHHHHTTSSCHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhh-c-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhh-HHHHHHHHHHHHHHHHH
Confidence 999999999999998873 2 334444444455555666555544444433 1122222222 22222211 22333
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 300 AESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 300 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
+...+.......|....+|..+...|...|++++|.+.++......
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3333333333445556678889999999999999999999887643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.90 E-value=2.9e-09 Score=97.50 Aligned_cols=255 Identities=10% Similarity=-0.021 Sum_probs=182.6
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHH-HHH---HHHHH-------hccCChHHHHHHHHHHHHcCCCCCcc
Q 038542 80 WSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEIT-MVT---VLSAC-------TDLGALEVGKWVESFIEKQMVNRSVG 148 (475)
Q Consensus 80 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~---ll~~~-------~~~~~~~~a~~~~~~~~~~~~~~~~~ 148 (475)
+..++......+..++|++++.+.... .|+..+ |+. ++... ...+.++++...++.+.+.. +.+..
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~ 108 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYG 108 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHH
Confidence 334444444444568999999999874 576543 332 22222 23445788888999888774 33666
Q ss_pred HHHHHHHHHHhcC--CHHHHHHHHHhcC---CCChhHHHHH-HHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 038542 149 LCNALIDMFAKCG--DVDKALKLFRSMN---GRTIVSWTSV-IAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSA 222 (475)
Q Consensus 149 ~~~~li~~y~~~g--~~~~A~~~~~~~~---~~~~~~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~ 222 (475)
.+..+..++...+ ++++|...+.++. .++...|... ...+...+..++|+..++...... +-+...|..+..+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~ 187 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL 187 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence 7777777777765 4889999988874 3456666544 466777899999999999888864 4467788888888
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a 300 (475)
+...|++++|...+....+. .|+ .......+...+..+++...+... ...++...+..+...+...++.++|
T Consensus 188 ~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a 261 (334)
T d1dcea1 188 LPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELES 261 (334)
T ss_dssp HHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHH
Confidence 88888888776655554432 111 122334455666777777766665 2233455666777788888999999
Q ss_pred HHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 301 ESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 301 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
...+.+..+.+|.+..++..++.+|.+.|++++|.+.++...+.
T Consensus 262 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 262 CKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=8.7e-07 Score=73.33 Aligned_cols=141 Identities=11% Similarity=-0.065 Sum_probs=100.5
Q ss_pred HHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHH
Q 038542 154 IDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGR 233 (475)
Q Consensus 154 i~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~ 233 (475)
...+...|++++|.+.|.++..++..+|..+...|...|++++|++.|++..+.. +-+...|..+..+|.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 4567788999999999998888888888888889999999999999999988864 455778888888888999999998
Q ss_pred HHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 234 EYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 234 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
..|+..... .+++... .+...|. ..++ ...++..+..++...|++++|.+.++++.+..|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888887652 1222100 0000000 0111 123455666777888888888888888888776
Q ss_pred CC
Q 038542 313 MH 314 (475)
Q Consensus 313 ~~ 314 (475)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 54
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.62 E-value=1.1e-07 Score=79.47 Aligned_cols=101 Identities=6% Similarity=-0.140 Sum_probs=49.3
Q ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 038542 211 PDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLI 288 (475)
Q Consensus 211 p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li 288 (475)
|+...+......+.+.|++++|+..|+..... .+.+...|..+..+|.+.|++++|...|++. .+.| +...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 44444444555555555555555555554431 1233444445555555555555555555444 3333 344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCC
Q 038542 289 SACCARGELKLAESITKRLIGNEPM 313 (475)
Q Consensus 289 ~~~~~~g~~~~a~~~~~~~~~~~p~ 313 (475)
.++...|++++|...+++++++.|.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~ 104 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKE 104 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc
Confidence 5555555555555555555444443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.59 E-value=3.5e-07 Score=69.00 Aligned_cols=103 Identities=11% Similarity=-0.031 Sum_probs=67.3
Q ss_pred HHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCH
Q 038542 220 LSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGEL 297 (475)
Q Consensus 220 l~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~ 297 (475)
...+...|++++|...|+...+ --+.+...|..+..+|...|++++|...+++. .+.| ++..|..+..++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIK--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh--cCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 4455666677777777766665 22344556666666677777777777766665 2233 566777777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 298 KLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 298 ~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
++|...++++++.+|.++..+..+.++
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~l 114 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 777777777777777776665555444
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.57 E-value=2.3e-06 Score=75.87 Aligned_cols=164 Identities=13% Similarity=0.009 Sum_probs=84.8
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHC-
Q 038542 28 LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQIS- 106 (475)
Q Consensus 28 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~- 106 (475)
.+.+++....+.+ .|....+..+. .+..+++++|.++|.+ ....|...|++++|++.|.+....
T Consensus 3 ~~~~~l~~aek~~-~~~~~~~~~~~---~~~~~~~~~Aa~~y~~-----------aa~~y~~~~~~~~A~~~y~kA~~~~ 67 (290)
T d1qqea_ 3 DPVELLKRAEKKG-VPSSGFMKLFS---GSDSYKFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQ 67 (290)
T ss_dssp CHHHHHHHHHHHS-SCCCTHHHHHS---CCSHHHHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc-CcchhHHHHhc---CCccccHHHHHHHHHH-----------HHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 4567777777765 44443333221 1111246777766544 567788888999998888877642
Q ss_pred ---CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCC-----CccHHHHHHHHHHh-cCCHHHHHHHHHhcCC-
Q 038542 107 ---GVCPD-EITMVTVLSACTDLGALEVGKWVESFIEKQMVNR-----SVGLCNALIDMFAK-CGDVDKALKLFRSMNG- 175 (475)
Q Consensus 107 ---g~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~li~~y~~-~g~~~~A~~~~~~~~~- 175 (475)
+-+++ ..+|..+...|.+.|++++|...+....+..... ...++..+...|.. .|++++|...|++..+
T Consensus 68 ~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l 147 (290)
T d1qqea_ 68 KKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW 147 (290)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHH
Confidence 11121 2456666666777777777777666554321100 12233333344422 3555555555544321
Q ss_pred ----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHH
Q 038542 176 ----RT----IVSWTSVIAGLAMHGRGLEAVALFEEMLE 206 (475)
Q Consensus 176 ----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 206 (475)
.+ ..+|..+...|...|++++|+..|++...
T Consensus 148 ~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~ 186 (290)
T d1qqea_ 148 YAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK 186 (290)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence 00 12344444444455555555555544443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.52 E-value=2.3e-07 Score=77.45 Aligned_cols=95 Identities=9% Similarity=-0.031 Sum_probs=57.1
Q ss_pred ChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCC-ChhHHHHH
Q 038542 177 TIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIP-KIEHYGCM 255 (475)
Q Consensus 177 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p-~~~~~~~l 255 (475)
+...+......|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|+..|+...+ +.| +...|..+
T Consensus 3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~---l~p~~~~a~~~l 78 (201)
T d2c2la1 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE---LDGQSVKAHFFL 78 (201)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SCTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH---hCCCcHHHHHHH
Confidence 33444445556666666666666666666543 34455566666666666666666666666653 233 34556666
Q ss_pred HHHHHHcCCHHHHHHHHHhC
Q 038542 256 VDMLCRSGRVKEAHEFIQKM 275 (475)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m 275 (475)
..+|.+.|++++|...|+++
T Consensus 79 g~~~~~l~~~~~A~~~~~~a 98 (201)
T d2c2la1 79 GQCQLEMESYDEAIANLQRA 98 (201)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHH
Confidence 66666666666666666654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.50 E-value=9.8e-07 Score=78.39 Aligned_cols=188 Identities=10% Similarity=0.012 Sum_probs=122.7
Q ss_pred HHHHHHhcCCHHHHHHHHHhcCC-----CC----hhHHHHHHHHHHHcCChHHHHHHHHHHHHc----CC-CCCHHHHHH
Q 038542 153 LIDMFAKCGDVDKALKLFRSMNG-----RT----IVSWTSVIAGLAMHGRGLEAVALFEEMLEA----GV-PPDDVAFVG 218 (475)
Q Consensus 153 li~~y~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~ 218 (475)
..++|..+|++++|.+.|.+..+ .+ ..+|+.+...|.+.|++++|++.+++..+. |. .....++..
T Consensus 43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (290)
T d1qqea_ 43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE 122 (290)
T ss_dssp HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence 45677788888888888776532 12 257788888888899999998888876542 11 111345566
Q ss_pred HHHHHh-cCCCHHHHHHHHHHhhhhc---CCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHhC----CCCC----CH-HHH
Q 038542 219 LLSACS-HCGLVDKGREYFDSMKNDF---GIIP-KIEHYGCMVDMLCRSGRVKEAHEFIQKM----PIEA----NP-IIW 284 (475)
Q Consensus 219 ll~~~~-~~g~~~~a~~~~~~m~~~~---~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~p----~~-~~~ 284 (475)
+...|. ..|++++|...++...+-. +..+ ...++..+...|...|++++|.+.|+++ +..+ .. ..+
T Consensus 123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (290)
T d1qqea_ 123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF 202 (290)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence 666664 4699999999998776421 1111 1345777889999999999999999886 1111 11 233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc-----hHHHHHHHHHh--ccChhHHHHHHHH
Q 038542 285 RTLISACCARGELKLAESITKRLIGNEPMHES-----NYVLLSHIYAK--LLRWEKKTKIREV 340 (475)
Q Consensus 285 ~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~-----~~~~l~~~~~~--~g~~~~a~~~~~~ 340 (475)
...+..+...|+++.|.+.+++..+.+|.... ....|+.+|.. .+.+++|...|+.
T Consensus 203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~ 265 (290)
T d1qqea_ 203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDN 265 (290)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 44555677889999999999999998875433 23445556544 3457777776643
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.49 E-value=4.8e-07 Score=68.21 Aligned_cols=90 Identities=14% Similarity=0.168 Sum_probs=82.7
Q ss_pred HHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChh
Q 038542 255 MVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWE 332 (475)
Q Consensus 255 li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 332 (475)
-...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..++++++.+|.++..|..++.+|...|+++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 456788999999999999998 4445 78889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhC
Q 038542 333 KKTKIREVMDKR 344 (475)
Q Consensus 333 ~a~~~~~~m~~~ 344 (475)
+|...++...+.
T Consensus 89 ~A~~~~~~a~~~ 100 (117)
T d1elwa_ 89 EAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.48 E-value=2.1e-07 Score=69.63 Aligned_cols=89 Identities=11% Similarity=-0.070 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
..+...+.+.|++++|...|++. ...| ++..|..+..++...|++++|+..++++++.+|.+..++..|+.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34567788999999999999997 4445 688999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHH
Q 038542 331 WEKKTKIREVM 341 (475)
Q Consensus 331 ~~~a~~~~~~m 341 (475)
+++|.+.+++.
T Consensus 100 ~~~A~~~l~~~ 110 (112)
T d1hxia_ 100 ANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999875
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.47 E-value=1.2e-06 Score=70.12 Aligned_cols=117 Identities=9% Similarity=-0.015 Sum_probs=89.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGE 296 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~ 296 (475)
....|.+.|++++|...|+...+. -+.+...|..+..+|...|++++|...|++. .+.| +...|..+..++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345677888888888888887763 2446677788888888888888888888877 4445 67889999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHHHH--HhccChhHHHHH
Q 038542 297 LKLAESITKRLIGNEPMHESNYVLLSHIY--AKLLRWEKKTKI 337 (475)
Q Consensus 297 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~--~~~g~~~~a~~~ 337 (475)
+++|...++++....|.++..+..+..+. ...+.++++...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888777665553 334446555543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=5.6e-06 Score=68.28 Aligned_cols=137 Identities=8% Similarity=-0.127 Sum_probs=88.0
Q ss_pred HHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 038542 54 MYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKW 133 (475)
Q Consensus 54 ~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~ 133 (475)
.+...| +++.|++.|+++..++..+|..+..+|...|++++|++.|++..+.. +-+...|..+..++.+.|++++|..
T Consensus 14 ~~~~~~-d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~~ 91 (192)
T d1hh8a_ 14 LAADKK-DWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAIK 91 (192)
T ss_dssp HHHHTT-CHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHCC-CHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHHH
Confidence 345556 88888888888887888888888888888888888888888888753 2356677777777888888888888
Q ss_pred HHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcC
Q 038542 134 VESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAG 208 (475)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 208 (475)
.|+..++... .+... .|...|.. .......++..+..+|.+.|++++|.+.|.......
T Consensus 92 ~~~kAl~~~~-~n~~~------~~~~~~~~---------~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 92 DLKEALIQLR-GNQLI------DYKILGLQ---------FKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHTTT-TCSEE------ECGGGTBC---------CEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCc-cCchH------HHHHhhhh---------cccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8877765321 11100 00000000 000011234445666777777777777777766643
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.36 E-value=1.2e-06 Score=70.06 Aligned_cols=92 Identities=13% Similarity=0.043 Sum_probs=83.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccC
Q 038542 253 GCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLR 330 (475)
Q Consensus 253 ~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 330 (475)
......|.+.|++++|...|++. ...| +...|..+...|...|++++|...|+++++.+|.+..+|..++.+|...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34456788999999999999998 4444 788999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhC
Q 038542 331 WEKKTKIREVMDKR 344 (475)
Q Consensus 331 ~~~a~~~~~~m~~~ 344 (475)
+++|...+++..+.
T Consensus 94 ~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 94 FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999988764
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.30 E-value=6.6e-06 Score=66.35 Aligned_cols=133 Identities=10% Similarity=0.025 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHH
Q 038542 180 SWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDML 259 (475)
Q Consensus 180 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 259 (475)
.+......+.+.|++++|+..|.+....- |.. .+..+.-......+. ...|+.+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 44455667778888888888888776531 100 000000011111111 23567788889
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHH
Q 038542 260 CRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334 (475)
Q Consensus 260 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 334 (475)
.+.|++++|...+++. .+.| ++..|..+..++...|++++|...|+++++++|.++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 4455 7889999999999999999999999999999999999888888887666655543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.27 E-value=0.00019 Score=61.93 Aligned_cols=231 Identities=10% Similarity=-0.053 Sum_probs=124.6
Q ss_pred ChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcCCCCCccHHH
Q 038542 76 DSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTD----LGALEVGKWVESFIEKQMVNRSVGLCN 151 (475)
Q Consensus 76 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 151 (475)
|+..+..|...+.+.+++++|++.|++..+.| |...+..|-..+.. ..+...+...+....+.+ +.....
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~ 74 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 74 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence 45566677777777777777777777777655 34444344444432 345555555555555443 222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--hcCCCH
Q 038542 152 ALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSAC--SHCGLV 229 (475)
Q Consensus 152 ~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~--~~~g~~ 229 (475)
.|...+... .....+.+.|...++.....|.. ............ ......
T Consensus 75 ~l~~~~~~~---------------------------~~~~~~~~~a~~~~~~a~~~g~~-~a~~~l~~~~~~~~~~~~~~ 126 (265)
T d1ouva_ 75 LLGNLYYSG---------------------------QGVSQNTNKALQYYSKACDLKYA-EGCASLGGIYHDGKVVTRDF 126 (265)
T ss_dssp HHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHCSSSCCCH
T ss_pred ccccccccc---------------------------cccchhhHHHHHHHhhhhhhhhh-hHHHhhcccccCCCcccchh
Confidence 333222221 00123444555555555444321 111111111111 123344
Q ss_pred HHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 038542 230 DKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR----SGRVKEAHEFIQKMPIEANPIIWRTLISACCA----RGELKLAE 301 (475)
Q Consensus 230 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~----~g~~~~a~ 301 (475)
..+...+..... ..+...+..|...|.. ..+...+..+++...-..+......|...+.. ..+++.|.
T Consensus 127 ~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~ 202 (265)
T d1ouva_ 127 KKAVEYFTKACD----LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEAL 202 (265)
T ss_dssp HHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred HHHHHHhhhhhc----ccccchhhhhhhhhccCCCcccccccchhhhhccccccccccccchhhhcccCcccccchhhhh
Confidence 444554444433 2344455555555554 33455555555554222355555555555554 56899999
Q ss_pred HHHHHHHhCCCCCCchHHHHHHHHHh----ccChhHHHHHHHHHHhCCC
Q 038542 302 SITKRLIGNEPMHESNYVLLSHIYAK----LLRWEKKTKIREVMDKRGM 346 (475)
Q Consensus 302 ~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~~ 346 (475)
..|++..+.+ ++..+..|..+|.. ..++++|.+.|++..+.|-
T Consensus 203 ~~~~~aa~~g--~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 203 ARYSKACELE--NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHHHHHHHTT--CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred hhHhhhhccc--CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 9999998886 35678888888876 3479999999998887773
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.25 E-value=0.0011 Score=58.85 Aligned_cols=278 Identities=12% Similarity=0.030 Sum_probs=161.0
Q ss_pred CCcchHHHHHHHHHcCCCcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHH
Q 038542 8 PNKFTYPFVLKACAGIGDLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGY 87 (475)
Q Consensus 8 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~ 87 (475)
||..-...+..-|.+.|.++.|..++..+. -|..++..|.+.+ +++.|.+++.+.. +..+|..+...+
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~-~~~~avd~~~k~~--~~~~~k~~~~~l 79 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLG-EYQAAVDGARKAN--STRTWKEVCFAC 79 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTT-CHHHHHHHHHHHT--CHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhc-cHHHHHHHHHHcC--CHHHHHHHHHHH
Confidence 555566677788889999999999987542 2567778888888 9999999887653 677999999999
Q ss_pred HHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHH
Q 038542 88 ARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKAL 167 (475)
Q Consensus 88 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~ 167 (475)
.+.....-| .+...+...+......++..|...|.+++...+++..... -..+...++-++.+|++.+ .++-.
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~ 152 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMR 152 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHH
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHH
Confidence 988766543 2223344557777778999999999999999988877643 2456778899999999875 45556
Q ss_pred HHHHhcCCC-Ch----------hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHH
Q 038542 168 KLFRSMNGR-TI----------VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYF 236 (475)
Q Consensus 168 ~~~~~~~~~-~~----------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~ 236 (475)
+.+...... |+ ..|.-++-.|.+.|.+++|..+.-. ..++..-....+..+.+..+++...++.
T Consensus 153 e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~-----~~~~~~~~~~f~e~~~k~~N~e~~~~~i 227 (336)
T d1b89a_ 153 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN-----HPTDAWKEGQFKDIITKVANVELYYRAI 227 (336)
T ss_dssp HHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH-----STTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred HHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH-----cchhhhhHHHHHHHHHccCChHHHHHHH
Confidence 666554322 22 2245555555566666555544322 1333333344455566666666555555
Q ss_pred HHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCc
Q 038542 237 DSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHES 316 (475)
Q Consensus 237 ~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~ 316 (475)
...... ++...+.++......-+..++.+.+++- +++......++...+.+ +..
T Consensus 228 ~~yL~~-----~p~~i~~lL~~v~~~~d~~r~V~~~~k~-------------------~~l~li~p~Le~v~~~n--~~~ 281 (336)
T d1b89a_ 228 QFYLEF-----KPLLLNDLLMVLSPRLDHTRAVNYFSKV-------------------KQLPLVKPYLRSVQNHN--NKS 281 (336)
T ss_dssp HHHHHH-----CGGGHHHHHHHHGGGCCHHHHHHHHHHT-------------------TCTTTTHHHHHHHHTTC--CHH
T ss_pred HHHHHc-----CHHHHHHHHHHhccCCCHHHHHHHHHhc-------------------CCcHHHHHHHHHHHHcC--hHH
Confidence 544432 2233444555544444555554444443 33444444444443332 234
Q ss_pred hHHHHHHHHHhccChhHHH
Q 038542 317 NYVLLSHIYAKLLRWEKKT 335 (475)
Q Consensus 317 ~~~~l~~~~~~~g~~~~a~ 335 (475)
....|...|...++++.-+
T Consensus 282 vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 282 VNESLNNLFITEEDYQALR 300 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhCcchhHHHH
Confidence 5666667777776654433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=2.3e-06 Score=64.66 Aligned_cols=104 Identities=14% Similarity=0.014 Sum_probs=71.2
Q ss_pred HHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHHH
Q 038542 218 GLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRV---KEAHEFIQKM-PIEANP---IIWRTLISA 290 (475)
Q Consensus 218 ~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~---~~A~~~~~~m-~~~p~~---~~~~~li~~ 290 (475)
.+++.+...+++++|.+.|+.... --+.++.++..+..++.+.++. ++|..+|+++ ...|+. .+|..|..+
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456666666777777777777665 2334556666666666654443 4577777765 333432 367788888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHH
Q 038542 291 CCARGELKLAESITKRLIGNEPMHESNYVLLSH 323 (475)
Q Consensus 291 ~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 323 (475)
|...|++++|.+.|+++++.+|.+..+...+..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~ 114 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERL 114 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHH
Confidence 999999999999999999999988766554433
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=2.1e-06 Score=64.93 Aligned_cols=93 Identities=9% Similarity=0.018 Sum_probs=77.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CchHHHHHHH
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARG---ELKLAESITKRLIGNEPMH--ESNYVLLSHI 324 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~ 324 (475)
...+++.+...+++++|.+.|++. ...| ++.++..+..++.+.+ ++++|+.+++++++.+|.+ ..++..|+.+
T Consensus 2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 346788888999999999999998 4444 7788888998887655 4567999999999988654 3478899999
Q ss_pred HHhccChhHHHHHHHHHHhC
Q 038542 325 YAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 325 ~~~~g~~~~a~~~~~~m~~~ 344 (475)
|.+.|++++|.+.+++..+.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999999874
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.13 E-value=2.6e-05 Score=62.67 Aligned_cols=63 Identities=6% Similarity=-0.102 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.+|+.+..+|.+.|++++|+..++++++.+|.++.++..++.+|...|++++|...++...+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 467778888999999999999999999999999999999999999999999999999998764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.12 E-value=3.2e-05 Score=60.93 Aligned_cols=63 Identities=6% Similarity=-0.126 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.+|..+..+|.+.|++++|.+.++++++.+|.+..+|..++.+|...|++++|...|+...+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466778888888899999999999999888988888999999999999999999888877653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.12 E-value=0.0015 Score=56.03 Aligned_cols=156 Identities=10% Similarity=-0.075 Sum_probs=95.7
Q ss_pred hhHHHHHHHHHHhCCCCHHHHHHHHhccCCC-ChhHHHHHHHHHHH----cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 038542 45 IHVQNTLVHMYGSCEGGIELGRKVFDEMSER-DSVSWSAMIGGYAR----LGLSTDAIDLFRQMQISGVCPDEITMVTVL 119 (475)
Q Consensus 45 ~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll 119 (475)
+..+..|...+-+.+ ++++|.+.|++..+. +..++..|...|.. ..++..|...+......+ +......+.
T Consensus 2 p~~~~~lG~~~~~~~-d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~ 77 (265)
T d1ouva_ 2 PKELVGLGAKSYKEK-DFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 77 (265)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence 445666777777878 999999999988654 77788888888877 668899999999888765 333333333
Q ss_pred HHHh----ccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHh----cCCHHHHHHHHHhcC-CCChhHHHHHHHHHHH
Q 038542 120 SACT----DLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAK----CGDVDKALKLFRSMN-GRTIVSWTSVIAGLAM 190 (475)
Q Consensus 120 ~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~----~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~ 190 (475)
..+. ...+.+.|...+....+.|.. .....+...+.. ......|...+.... ..+...+..+...|..
T Consensus 78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~L~~~~~~ 154 (265)
T d1ouva_ 78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDA 154 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhcccccchhhhhhhhhcc
Confidence 3332 356778888888888776532 222333333332 233555555555433 2345555555555554
Q ss_pred ----cCChHHHHHHHHHHHHc
Q 038542 191 ----HGRGLEAVALFEEMLEA 207 (475)
Q Consensus 191 ----~g~~~~A~~l~~~m~~~ 207 (475)
..+...+...++...+.
T Consensus 155 ~~~~~~~~~~~~~~~~~a~~~ 175 (265)
T d1ouva_ 155 GRGTPKDLKKALASYDKACDL 175 (265)
T ss_dssp TSSSCCCHHHHHHHHHHHHHT
T ss_pred CCCcccccccchhhhhccccc
Confidence 23344445555544443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.11 E-value=3.4e-05 Score=61.87 Aligned_cols=91 Identities=11% Similarity=0.033 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhc
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKL 328 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 328 (475)
.|..+..+|.+.|++++|...++.. .+.| +...|..+..++...|++++|...|+++++++|.++.+...+..+....
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA 145 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 4666778899999999999999887 3344 7889999999999999999999999999999999988888887777666
Q ss_pred cChh-HHHHHHHHH
Q 038542 329 LRWE-KKTKIREVM 341 (475)
Q Consensus 329 g~~~-~a~~~~~~m 341 (475)
+... ...+++..|
T Consensus 146 ~~~~e~~kk~~~~~ 159 (168)
T d1kt1a1 146 KEHNERDRRTYANM 159 (168)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 6543 344554444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=2.7e-05 Score=62.53 Aligned_cols=65 Identities=5% Similarity=-0.079 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
+...|..+..++.+.|++++|+..++++++++|.++.+|..++.+|...|++++|.+.++...+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 45567777888888899999999999999999988888999999999999999999888887763
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.03 E-value=2.5e-05 Score=62.69 Aligned_cols=131 Identities=9% Similarity=-0.033 Sum_probs=93.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCC-CCChhHHHHHHHHH
Q 038542 181 WTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGI-IPKIEHYGCMVDML 259 (475)
Q Consensus 181 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~ 259 (475)
+......+...|++++|+..|.+..+. +............. .+ +.....|..+..+|
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~~----------~~~~~~~~~~~nla~~~ 87 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADGA----------KLQPVALSCVLNIGACK 87 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHHG----------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHHH----------HhChhhHHHHHHHHHHH
Confidence 444556677888888888888776541 00000000000000 11 12345677788899
Q ss_pred HHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhH
Q 038542 260 CRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEK 333 (475)
Q Consensus 260 ~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 333 (475)
.+.|++++|...+++. .+.| ++..|..+..++...|+++.|.+.|+++++++|.+..++..+..++.+.....+
T Consensus 88 ~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 88 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 5566 788999999999999999999999999999999998888887777655544433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.03 E-value=2.7e-05 Score=61.38 Aligned_cols=126 Identities=12% Similarity=-0.088 Sum_probs=90.0
Q ss_pred hHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 179 VSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 179 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..+......+.+.|++.+|+..|.+....- |.. ....-......... ....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 456666677888888888888888877531 110 00000000000011 122467778889
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIY 325 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 325 (475)
|.+.|++++|.+.+++. .+.| ++.+|..+..++...|++++|...|+++++.+|.+..+...+..+.
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999999999987 4455 7899999999999999999999999999999999987766665544
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.95 E-value=1.5e-05 Score=60.76 Aligned_cols=92 Identities=9% Similarity=0.104 Sum_probs=74.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch-------HHHHH
Q 038542 252 YGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN-------YVLLS 322 (475)
Q Consensus 252 ~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~-------~~~l~ 322 (475)
+..+...|.+.|++++|...|++. .+.| +...|..+..+|...|+++.|.+.++++++.+|.+... |..+.
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677888899999999998887 3344 68889999999999999999999999999988777654 44566
Q ss_pred HHHHhccChhHHHHHHHHHHh
Q 038542 323 HIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 323 ~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..+...+++++|.+.++....
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 667778899999999877653
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.86 E-value=6.9e-05 Score=55.32 Aligned_cols=52 Identities=13% Similarity=0.049 Sum_probs=20.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
+.+.|++++|+..|++..... +-+...|..+..++.+.|++++|...|+...
T Consensus 26 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al 77 (112)
T d1hxia_ 26 MLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHAR 77 (112)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhccccccc
Confidence 333444444444444443321 1123333444444444444444444444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.85 E-value=0.00018 Score=57.38 Aligned_cols=63 Identities=11% Similarity=0.008 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 282 IIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 282 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
.+|..+..+|...|++++|+..++++++++|.+..+|..++.+|...|++++|...++...+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 456678888999999999999999999999999999999999999999999999999998764
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.84 E-value=5.4e-05 Score=61.21 Aligned_cols=118 Identities=10% Similarity=-0.011 Sum_probs=82.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 038542 219 LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEANPIIWRTLISACCARGELK 298 (475)
Q Consensus 219 ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~ 298 (475)
........|++++|.+.|.....-+.-.+-... ...........-++. -....+..+..++...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~--------~~~~w~~~~r~~l~~----~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDDL--------RDFQFVEPFATALVE----DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGG--------TTSTTHHHHHHHHHH----HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccccC--------cchHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCch
Confidence 335667788888888888887753211110000 000000000111111 02456788999999999999
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHh-----CCCcc
Q 038542 299 LAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDK-----RGMKK 348 (475)
Q Consensus 299 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~-----~~~~~ 348 (475)
+|...++++++.+|.+...|..++.+|.+.|++++|.+.|+++.+ .|+.|
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 999999999999999999999999999999999999999999854 46554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.67 E-value=1.7e-05 Score=75.89 Aligned_cols=225 Identities=9% Similarity=-0.072 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChh---HHHHHHHHHHHcCChhHHHHHHHHHH
Q 038542 28 LGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSV---SWSAMIGGYARLGLSTDAIDLFRQMQ 104 (475)
Q Consensus 28 ~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~---~~~~li~~~~~~g~~~~A~~~~~~m~ 104 (475)
+|.+.++++.+.. +.....+..+..+|...+ ++++| |+++...|.. .++. ........+..+.+.++...
T Consensus 4 eA~q~~~qA~~l~-p~~a~a~~~la~~~~~~~-~l~ea---ye~~i~~dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~~~ 76 (497)
T d1ya0a1 4 QSAQYLRQAEVLK-ADMTDSKLGPAEVWTSRQ-ALQDL---YQKMLVTDLEYALDKKV--EQDLWNHAFKNQITTLQGQA 76 (497)
T ss_dssp HHHHHHHHHHHHH-GGGTCSSSCSSSSHHHHH-HHHHH---HHHHHHHCHHHHHHHTH--HHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHhhHHHHHHHHc-hHHHH---HHHHHHcChhhHHHHhH--HHHHHHHHHHHHHHHHHHhc
Confidence 5677777777652 222334444555555555 66655 3333221211 1111 11111122455666666666
Q ss_pred HCCCCCCHHHHHHHHHHH--hccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCCh-hHH
Q 038542 105 ISGVCPDEITMVTVLSAC--TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTI-VSW 181 (475)
Q Consensus 105 ~~g~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~-~~~ 181 (475)
+....++..-....+..+ ...+.++.+...+....+.. +++...+..+...+.+.|+.++|...+.....++. .++
T Consensus 77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~ 155 (497)
T d1ya0a1 77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQHCL 155 (497)
T ss_dssp SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHHHHHHH
T ss_pred ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHHHHH
Confidence 544334433222222221 22333444444333332221 23455566677777778888777766655433322 456
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHH
Q 038542 182 TSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCR 261 (475)
Q Consensus 182 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 261 (475)
..+...+...|++++|...|++..+.. +-+..+|+.|...+...|+..+|...|.+... -.+|-...+..|...|.+
T Consensus 156 ~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~--~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 156 VHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIA--VKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHS--SSBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHh--CCCCCHHHHHHHHHHHHH
Confidence 667777788888888888888887753 34457788888888888888888888877765 445666777777777655
Q ss_pred cC
Q 038542 262 SG 263 (475)
Q Consensus 262 ~g 263 (475)
..
T Consensus 233 ~~ 234 (497)
T d1ya0a1 233 AL 234 (497)
T ss_dssp HT
T ss_pred hh
Confidence 43
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=4.2e-06 Score=80.21 Aligned_cols=221 Identities=11% Similarity=-0.023 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccCChHHHHHHHHHHHHcCCCCCc-cHHHHHHHHHHhcCCHHHHHHHHHh
Q 038542 95 DAIDLFRQMQISGVCPDE-ITMVTVLSACTDLGALEVGKWVESFIEKQMVNRSV-GLCNALIDMFAKCGDVDKALKLFRS 172 (475)
Q Consensus 95 ~A~~~~~~m~~~g~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~y~~~g~~~~A~~~~~~ 172 (475)
+|.+.|++..+ ++||. ..+..+..++...++++++ +++++... |+. ..++.....+ + ..+..+.+.++.
T Consensus 4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~r~ 74 (497)
T d1ya0a1 4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHHHH
Confidence 67788888876 35553 3444555556666666654 56665442 211 1111111111 1 112344555554
Q ss_pred cCC----CChhHHHHHHHH--HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCC
Q 038542 173 MNG----RTIVSWTSVIAG--LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGII 246 (475)
Q Consensus 173 ~~~----~~~~~~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~ 246 (475)
..+ ++.........+ +...+.++.|+..+....... +++...+..+...+.+.|+.+.|...+...... .
T Consensus 75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~ 150 (497)
T d1ya0a1 75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY---I 150 (497)
T ss_dssp HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH---H
T ss_pred hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C
Confidence 322 122222211112 222344555555544443321 334556677777888888888888777655431 1
Q ss_pred CChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHH
Q 038542 247 PKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHI 324 (475)
Q Consensus 247 p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 324 (475)
| ...+..+.+.+...|++++|...|++. .+.| +...|+.|...+...|+..+|...|.+.+...|+.+.++..|...
T Consensus 151 ~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~ 229 (497)
T d1ya0a1 151 C-QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA 229 (497)
T ss_dssp H-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred H-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 1 246777888888999999999998887 4555 567888899999999999999999999999888888888888887
Q ss_pred HHhcc
Q 038542 325 YAKLL 329 (475)
Q Consensus 325 ~~~~g 329 (475)
+.+..
T Consensus 230 ~~~~~ 234 (497)
T d1ya0a1 230 LSKAL 234 (497)
T ss_dssp HHHHT
T ss_pred HHHhh
Confidence 76554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.65 E-value=0.00036 Score=52.66 Aligned_cols=56 Identities=13% Similarity=0.026 Sum_probs=28.9
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhh
Q 038542 184 VIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMK 240 (475)
Q Consensus 184 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~ 240 (475)
+...|.+.|++++|+..|.+..+.+ +.+...+..+..+|.+.|++++|...++.+.
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al 65 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAI 65 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHH
Confidence 3444555555555555555555542 2334455555555555555555555555544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.57 E-value=0.00096 Score=53.51 Aligned_cols=122 Identities=15% Similarity=0.103 Sum_probs=82.5
Q ss_pred HHHHhccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCCChhHHHHHHHHHHHcCChHHHH
Q 038542 119 LSACTDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGRTIVSWTSVIAGLAMHGRGLEAV 198 (475)
Q Consensus 119 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 198 (475)
.......|++++|.+.+...+...- ....- + + ..+.+ +...-..+....+..+..+...+...|++++|+
T Consensus 18 g~~~~~~g~~e~A~~~~~~AL~l~r--G~~l~----~-~-~~~~w--~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al 87 (179)
T d2ff4a2 18 GVHAAAAGRFEQASRHLSAALREWR--GPVLD----D-L-RDFQF--VEPFATALVEDKVLAHTAKAEAEIACGRASAVI 87 (179)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCC--SSTTG----G-G-TTSTT--HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc--ccccc----c-C-cchHH--HHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHH
Confidence 3456778888888888888876421 11000 0 0 00110 111111111123456788889999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhh----hcCCCCChhH
Q 038542 199 ALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKN----DFGIIPKIEH 251 (475)
Q Consensus 199 ~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~----~~~~~p~~~~ 251 (475)
..++++.... +-+...|..++.++...|+.++|++.|+.+.+ .+|+.|+..+
T Consensus 88 ~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 88 AELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 9999998864 56788899999999999999999999988744 3688888765
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.53 E-value=8.7e-05 Score=57.65 Aligned_cols=125 Identities=11% Similarity=0.039 Sum_probs=68.4
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
|-+.+.+++|+..|+...+.. +.+...+..+..++...+++..+.+ ..+.+++
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e--------------------------~~~~~~~ 59 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD--------------------------AKQMIQE 59 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH--------------------------HHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH--------------------------HHHHHHH
Confidence 344556677777777766653 3445555555555543322211110 1122334
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHH
Q 038542 268 AHEFIQKM-PIEA-NPIIWRTLISACCARG-----------ELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKK 334 (475)
Q Consensus 268 A~~~~~~m-~~~p-~~~~~~~li~~~~~~g-----------~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a 334 (475)
|...|++. .+.| +..+|..+..+|...| +++.|.+.|+++++.+|.+...+..|... .+|
T Consensus 60 Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka 132 (145)
T d1zu2a1 60 AITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKA 132 (145)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTH
T ss_pred HHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHH
Confidence 44444443 2233 3445555555544432 46889999999999999886555544333 466
Q ss_pred HHHHHHHHhCCC
Q 038542 335 TKIREVMDKRGM 346 (475)
Q Consensus 335 ~~~~~~m~~~~~ 346 (475)
.+++.+..++|+
T Consensus 133 ~~~~~e~~k~~~ 144 (145)
T d1zu2a1 133 PQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHHHSSS
T ss_pred HHHHHHHHHHhc
Confidence 667766666653
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.49 E-value=0.00031 Score=49.88 Aligned_cols=74 Identities=16% Similarity=0.129 Sum_probs=56.2
Q ss_pred hHHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 250 EHYGCMVDMLCRSGRVKEAHEFIQKM--------PIEAN-PIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 250 ~~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
..+-.+...+.+.|++++|...|++. ...++ ..++..|..++.+.|++++|...++++++.+|.++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34445666777777777777777665 11122 5678889999999999999999999999999999887776
Q ss_pred HHH
Q 038542 321 LSH 323 (475)
Q Consensus 321 l~~ 323 (475)
+..
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 643
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.46 E-value=0.031 Score=49.13 Aligned_cols=244 Identities=11% Similarity=0.059 Sum_probs=134.4
Q ss_pred CChhHHHHHHHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 038542 43 DDIHVQNTLVHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSAC 122 (475)
Q Consensus 43 ~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~ 122 (475)
||..--..+.+.|.+.| .++.|..+|..+.. |..++..+.+.++++.|.+++.+.. +..+|..+..+|
T Consensus 12 ~n~~d~~~i~~~c~~~~-lye~A~~lY~~~~d-----~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l 79 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEK-MYDAAKLLYNNVSN-----FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC 79 (336)
T ss_dssp C-----------------CTTTHHHHHHHTTC-----HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCC-CHHHHHHHHHhCCC-----HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence 44444455666666777 88888888876553 6667788888888998888876542 566788888888
Q ss_pred hccCChHHHHHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcC---CCChhHHHHHHHHHHHcCChHHHHH
Q 038542 123 TDLGALEVGKWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMN---GRTIVSWTSVIAGLAMHGRGLEAVA 199 (475)
Q Consensus 123 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~ 199 (475)
.+......+ .+.......++.....++..|-..|.+++...+++... ..+...++-++..|++.+. ++
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~k--- 150 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QK--- 150 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HH---
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HH---
Confidence 877665443 22222233444555677888888888888888888643 3455677778888877642 23
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhCCCCC
Q 038542 200 LFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKMPIEA 279 (475)
Q Consensus 200 l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~p 279 (475)
+.+.+...+..-| ...++..|...+.+++ ++-.|.+.|.+++|..++-.-+ +
T Consensus 151 l~e~l~~~s~~y~---~~k~~~~c~~~~l~~e-----------------------lv~Ly~~~~~~~~A~~~~i~~~--~ 202 (336)
T d1b89a_ 151 MREHLELFWSRVN---IPKVLRAAEQAHLWAE-----------------------LVFLYDKYEEYDNAIITMMNHP--T 202 (336)
T ss_dssp HHHHHHHHSTTSC---HHHHHHHHHTTTCHHH-----------------------HHHHHHHTTCHHHHHHHHHHST--T
T ss_pred HHHHHHhccccCC---HHHHHHHHHHcCChHH-----------------------HHHHHHhcCCHHHHHHHHHHcc--h
Confidence 3333332111112 1223445544444433 4455556666666655544432 2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHH
Q 038542 280 NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIR 338 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~ 338 (475)
+..-....+..+.+..+.+...++....++..| .....|+......-+..+..+.+
T Consensus 203 ~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~~p---~~i~~lL~~v~~~~d~~r~V~~~ 258 (336)
T d1b89a_ 203 DAWKEGQFKDIITKVANVELYYRAIQFYLEFKP---LLLNDLLMVLSPRLDHTRAVNYF 258 (336)
T ss_dssp TTCCHHHHHHHHHHCSSTHHHHHHHHHHHHHCG---GGHHHHHHHHGGGCCHHHHHHHH
T ss_pred hhhhHHHHHHHHHccCChHHHHHHHHHHHHcCH---HHHHHHHHHhccCCCHHHHHHHH
Confidence 222234455566666777666666666555443 34455555555555555544444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.42 E-value=0.00035 Score=54.83 Aligned_cols=88 Identities=10% Similarity=-0.082 Sum_probs=63.7
Q ss_pred HHHHHHcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-------CC
Q 038542 256 VDMLCRSGRVKEAHEFIQKM----PIEAN----------PIIWRTLISACCARGELKLAESITKRLIGNEP-------MH 314 (475)
Q Consensus 256 i~~~~~~g~~~~A~~~~~~m----~~~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p-------~~ 314 (475)
...+.+.|++++|...|++. +..|+ ...|+.+..+|...|++++|...+++.++..| ..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33455667777777766665 21121 35688888899999999999988888875432 11
Q ss_pred ----CchHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 315 ----ESNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 315 ----~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
..++..+..+|...|++++|.+.|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22567889999999999999999998765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.32 E-value=0.00027 Score=60.79 Aligned_cols=125 Identities=10% Similarity=0.018 Sum_probs=76.4
Q ss_pred HHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCC-hhHHHHHHHHHHHcCCHHH
Q 038542 189 AMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPK-IEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 189 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~g~~~~ 267 (475)
.+.|++++|+..+++..+.. +-|...+..+...++..|++++|...++...+. .|+ ...+..+..++...+..++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~~ 82 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARKD 82 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccHH
Confidence 45678888888888877763 456677777888888888888888888877652 343 3344444444443333333
Q ss_pred HHHHHHhC--CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 268 AHEFIQKM--PIEA-NPIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 268 A~~~~~~m--~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
+..-.... ...| +...+......+...|+.++|.+.++++.+..|..+..
T Consensus 83 a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~ 135 (264)
T d1zbpa1 83 FAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFL 135 (264)
T ss_dssp HTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEE
T ss_pred HHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcc
Confidence 32222221 1122 22333444556677788888888888888877766543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.32 E-value=8.9e-05 Score=57.59 Aligned_cols=85 Identities=6% Similarity=-0.015 Sum_probs=62.5
Q ss_pred HHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHH
Q 038542 259 LCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCA----------RGELKLAESITKRLIGNEPMHESNYVLLSHIYA 326 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~----------~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 326 (475)
|-+.+.+++|.+.|+.. .+.| ++.+|..+..++.. .+.+++|+..++++++++|.+..+|..+..+|.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 34455667777777766 3334 55666666666553 345688999999999999999999999999998
Q ss_pred hccC-----------hhHHHHHHHHHHh
Q 038542 327 KLLR-----------WEKKTKIREVMDK 343 (475)
Q Consensus 327 ~~g~-----------~~~a~~~~~~m~~ 343 (475)
..|+ +++|.+.|++..+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 8764 5778887777665
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.14 E-value=0.0018 Score=50.48 Aligned_cols=62 Identities=13% Similarity=-0.035 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhC--------CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 251 HYGCMVDMLCRSGRVKEAHEFIQKM--------PIEAN-----PIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 251 ~~~~li~~~~~~g~~~~A~~~~~~m--------~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
.|+.+..+|...|++++|...+++. ...++ ...|..+..+|...|++++|...|++++++.|
T Consensus 57 ~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 57 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3444555555555555555544443 11221 23567788899999999999999999887654
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.07 E-value=0.00019 Score=61.72 Aligned_cols=121 Identities=10% Similarity=0.002 Sum_probs=85.3
Q ss_pred HhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 038542 223 CSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM-PIEA-NPIIWRTLISACCARGELKLA 300 (475)
Q Consensus 223 ~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~p-~~~~~~~li~~~~~~g~~~~a 300 (475)
..+.|++++|+..+++..+ --+.+...+..+...|+..|++++|.+.|+.. ...| +...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999987 55667899999999999999999999999988 5556 355555555555443333332
Q ss_pred HHHHHHHHhC-CCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCC
Q 038542 301 ESITKRLIGN-EPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRG 345 (475)
Q Consensus 301 ~~~~~~~~~~-~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 345 (475)
.......... +|+....+...+..+...|++++|.+.++...+..
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~ 129 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELR 129 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 2211111111 23333445566778889999999999999987643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.69 E-value=0.004 Score=43.73 Aligned_cols=64 Identities=9% Similarity=-0.125 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-------CchHHHHHHHHHhccChhHHHHHHHHHHhC
Q 038542 281 PIIWRTLISACCARGELKLAESITKRLIGNEPMH-------ESNYVLLSHIYAKLLRWEKKTKIREVMDKR 344 (475)
Q Consensus 281 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 344 (475)
...+-.+...+.+.|+++.|...++++++..|.+ ..++..|..+|.+.|++++|...+++..+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 4445578889999999999999999998764332 346889999999999999999999998764
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.35 E-value=0.062 Score=38.70 Aligned_cols=141 Identities=13% Similarity=0.065 Sum_probs=97.6
Q ss_pred HHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHH
Q 038542 188 LAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKE 267 (475)
Q Consensus 188 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~ 267 (475)
+...|..++..+++.+.... .+..-|+.++.-....-+-+-..++++.+-+-+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 44567777777777777653 3555666666655555666666666666655333332 333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHHHHHHhccChhHHHHHHHHHHhCCCc
Q 038542 268 AHEFIQKMPIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLSHIYAKLLRWEKKTKIREVMDKRGMK 347 (475)
Q Consensus 268 A~~~~~~m~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~ 347 (475)
....+-.++ .+.......++.+..+|+-+.-.++.+.+.+.+..++....-+.++|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 234556667888899999999999999988877667888899999999999999999999999999975
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.42 Score=43.61 Aligned_cols=234 Identities=13% Similarity=0.052 Sum_probs=113.1
Q ss_pred HHHHHhCCCCHHHHHHHHhccCCCChhHHHHHHHHHHHcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 038542 52 VHMYGSCEGGIELGRKVFDEMSERDSVSWSAMIGGYARLGLSTDAIDLFRQMQISGVCPDEITMVTVLSACTDLGALEVG 131 (475)
Q Consensus 52 i~~~~~~gg~~~~A~~~f~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~ll~~~~~~~~~~~a 131 (475)
+..+++.+ +++.....+..-+ .+...-.....+....|+..+|...+..+-..|. ..+..+..+...+...|.+
T Consensus 79 l~~L~~~~-~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~l--- 152 (450)
T d1qsaa1 79 VNELARRE-DWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQ--- 152 (450)
T ss_dssp HHHHHHTT-CHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCS---
T ss_pred HHHHHhcc-CHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCCC---
Confidence 44556666 7777666554322 2444455667777778888888777776665542 1222223333333222222
Q ss_pred HHHHHHHHHcCCCCCccHHHHHHHHHHhcCCHHHHHHHHHhcCCC---------------------------ChhHHHHH
Q 038542 132 KWVESFIEKQMVNRSVGLCNALIDMFAKCGDVDKALKLFRSMNGR---------------------------TIVSWTSV 184 (475)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~li~~y~~~g~~~~A~~~~~~~~~~---------------------------~~~~~~~l 184 (475)
+...+-.-+......|+...|..+...+... +......+
T Consensus 153 --------------t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 218 (450)
T d1qsaa1 153 --------------DPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMA 218 (450)
T ss_dssp --------------CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHhHHHHHhcCCCChhhhHHH
Confidence 1112222233333334444444444433322 11111222
Q ss_pred HHHHHH--cCChHHHHHHHHHHHHcCCCCCHHHHHH----HHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHH
Q 038542 185 IAGLAM--HGRGLEAVALFEEMLEAGVPPDDVAFVG----LLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDM 258 (475)
Q Consensus 185 i~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~----ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 258 (475)
..++.+ ..+.+.|..++........ .+...... +.......+..+.+..++...... + .+.....-.+..
T Consensus 219 ~~~l~rla~~d~~~a~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~-~--~~~~~~~w~~~~ 294 (450)
T d1qsaa1 219 AVAFASVARQDAENARLMIPSLAQAQQ-LNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIERRVRM 294 (450)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHTT-CCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHHHHHH
T ss_pred HHHHHHHhccChhHHHHHHHhhhhccc-ccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc-c--cchHHHHHHHHH
Confidence 222222 2455666666666554321 12211111 122223345556666666555442 2 233333344444
Q ss_pred HHHcCCHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 038542 259 LCRSGRVKEAHEFIQKMPIEA--NPIIWRTLISACCARGELKLAESITKRLIG 309 (475)
Q Consensus 259 ~~~~g~~~~A~~~~~~m~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 309 (475)
..+.+++..+...++.++..| ...-.-=+..++...|+.+.|...|..+..
T Consensus 295 al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 295 ALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 556677777777777774333 122223355667777777777777777654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.57 E-value=0.28 Score=36.08 Aligned_cols=16 Identities=13% Similarity=-0.020 Sum_probs=9.2
Q ss_pred ChhHHHHHHHHHHHCC
Q 038542 92 LSTDAIDLFRQMQISG 107 (475)
Q Consensus 92 ~~~~A~~~~~~m~~~g 107 (475)
++++|+++|++.-+.|
T Consensus 8 d~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 4556666666655554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.45 E-value=0.13 Score=37.24 Aligned_cols=64 Identities=8% Similarity=-0.038 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCCC-chHHHHHHHHHhccChhHHHHHHHHHHh
Q 038542 280 NPIIWRTLISACCARG---ELKLAESITKRLIGNEPMHE-SNYVLLSHIYAKLLRWEKKTKIREVMDK 343 (475)
Q Consensus 280 ~~~~~~~li~~~~~~g---~~~~a~~~~~~~~~~~p~~~-~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 343 (475)
++.+--....++.++. +.++|+.+++.+.+.+|.+. ..+..|..+|.+.|++++|.+.++.+.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3444334444444432 34566666666666555443 3555666667777777777777666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.19 E-value=0.26 Score=36.24 Aligned_cols=109 Identities=8% Similarity=-0.144 Sum_probs=60.3
Q ss_pred CcHHHHHHHHHHHHhcCCCChhHHHHHHHHHHhCCCCHHHHHHHHhccCCC-ChhHHHHHHHHHHH----cCChhHHHHH
Q 038542 25 DLNLGKSVHGAVLKFQFGDDIHVQNTLVHMYGSCEGGIELGRKVFDEMSER-DSVSWSAMIGGYAR----LGLSTDAIDL 99 (475)
Q Consensus 25 ~~~~a~~~~~~~~~~g~~~~~~~~~~li~~~~~~gg~~~~A~~~f~~~~~~-~~~~~~~li~~~~~----~g~~~~A~~~ 99 (475)
|.++|...|....+.|. ...+..|.. .... +.++|.+.|++..+. ++.+...|...|.. ..+.++|+++
T Consensus 8 d~~~A~~~~~kaa~~g~---~~a~~~l~~--~~~~-~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~ 81 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE---MFGCLSLVS--NSQI-NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 81 (133)
T ss_dssp HHHHHHHHHHHHHHTTC---TTHHHHHHT--CTTS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCC---hhhhhhhcc--cccc-CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHH
Confidence 56778888888777662 222223322 2223 677777777665443 55556666665554 3456677777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHcC
Q 038542 100 FRQMQISGVCPDEITMVTVLSACTD----LGALEVGKWVESFIEKQM 142 (475)
Q Consensus 100 ~~~m~~~g~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~ 142 (475)
|++..+.| +......|...+.. ..+.++|..++....+.|
T Consensus 82 ~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 82 YSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 77776655 23333333333322 345666666666666555
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.85 E-value=0.74 Score=33.00 Aligned_cols=137 Identities=15% Similarity=0.115 Sum_probs=91.7
Q ss_pred HHhcCCHHHHHHHHHhcCC-CChhHHHHHHHHHHHcCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHH
Q 038542 157 FAKCGDVDKALKLFRSMNG-RTIVSWTSVIAGLAMHGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREY 235 (475)
Q Consensus 157 y~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~ 235 (475)
+.-.|.+++..++..+... .+..-||=+|.-....-+-+-..+.++..-.. .| .+..+++......
T Consensus 12 ~ildG~ve~Gveii~k~~~ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FD----------ls~C~Nlk~vv~C 78 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSVVEC 78 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHHHHH
T ss_pred HHHhhhHHhHHHHHHHHcccCCccccceeeeecccccchHHHHHHHHHHhhh---cC----------chhhhcHHHHHHH
Confidence 3456888888888887653 35555555665555555555555555544321 11 1233444444444
Q ss_pred HHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 038542 236 FDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHEFIQKM--PIEANPIIWRTLISACCARGELKLAESITKRLIGNEP 312 (475)
Q Consensus 236 ~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p 312 (475)
+-.+- .+.+....-++.+..+|+-+...++++.+ .-+|++...-.+..||.+.|+..++.+++.++-+.+-
T Consensus 79 ~~~~n------~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 79 GVINN------TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc------chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 43332 24566777788899999999988888874 5567888888999999999999999999998877663
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.82 E-value=1.4 Score=31.54 Aligned_cols=71 Identities=14% Similarity=0.096 Sum_probs=48.6
Q ss_pred CChhHHHHHHHHHHHcCC---HHHHHHHHHhC-CCCC-C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCch
Q 038542 247 PKIEHYGCMVDMLCRSGR---VKEAHEFIQKM-PIEA-N-PIIWRTLISACCARGELKLAESITKRLIGNEPMHESN 317 (475)
Q Consensus 247 p~~~~~~~li~~~~~~g~---~~~A~~~~~~m-~~~p-~-~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~ 317 (475)
|+..+--...-++.+... .+++..++++. ...| + ...|..|.-+|.+.|+++.|.+.++++++.+|.+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 444454445555555443 45677777666 2223 3 3566778888999999999999999999999988554
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.53 E-value=0.78 Score=31.09 Aligned_cols=63 Identities=14% Similarity=0.211 Sum_probs=50.1
Q ss_pred ChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHH
Q 038542 193 RGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVD 257 (475)
Q Consensus 193 ~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 257 (475)
+.-++.+-++.+....+.|++....+.+.||.+.+++..|.++|+..+.+ ..++...|..+++
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K--~~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--hcCcHHHHHHHHH
Confidence 45566777777777888999999999999999999999999999998874 3344556776654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.96 E-value=3.3 Score=27.91 Aligned_cols=57 Identities=16% Similarity=0.197 Sum_probs=40.8
Q ss_pred HHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHHHH
Q 038542 266 KEAHEFIQKM---PIEANPIIWRTLISACCARGELKLAESITKRLIGNEPMHESNYVLLS 322 (475)
Q Consensus 266 ~~A~~~~~~m---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~l~ 322 (475)
-++.+-++.+ .+-|++.+..+.+.||.+.+++..|.++++-+...--.+...|..++
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 3444444443 67789999999999999999999999999988754422345565543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=82.27 E-value=16 Score=32.36 Aligned_cols=145 Identities=11% Similarity=0.038 Sum_probs=80.9
Q ss_pred cCChHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHhhhhcCCCCChhHHHHHHHHHHHcCCHHHHHH
Q 038542 191 HGRGLEAVALFEEMLEAGVPPDDVAFVGLLSACSHCGLVDKGREYFDSMKNDFGIIPKIEHYGCMVDMLCRSGRVKEAHE 270 (475)
Q Consensus 191 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~ll~~~~~~g~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 270 (475)
.+..+.+...+......+ .+.......+......+++..+...+..|.. .........--+..++...|+.++|..
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~--~~~~~~r~~YW~gRa~~~~G~~~~A~~ 340 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPM--EAKEKDEWRYWQADLLLERGREAEAKE 340 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCT--TGGGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCc--ccccHHHHHHHHHHHHHHcCChhhHHH
Confidence 344555555555444432 2222222233333444566666666655543 222223333444555566666666666
Q ss_pred HHHhC---------------C-----------CCCC-HHH---HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCchHHH
Q 038542 271 FIQKM---------------P-----------IEAN-PII---WRTLISACCARGELKLAESITKRLIGNEPMHESNYVL 320 (475)
Q Consensus 271 ~~~~m---------------~-----------~~p~-~~~---~~~li~~~~~~g~~~~a~~~~~~~~~~~p~~~~~~~~ 320 (475)
.|... | ..+. ... -..-+..+...|....|...+..+.+.. ++.....
T Consensus 341 ~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~--~~~~~~~ 418 (450)
T d1qsaa1 341 ILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK--SKTEQAQ 418 (450)
T ss_dssp HHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CHHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC--CHHHHHH
Confidence 55553 0 0011 101 1123456778899999999998887654 3456778
Q ss_pred HHHHHHhccChhHHHHHHHHH
Q 038542 321 LSHIYAKLLRWEKKTKIREVM 341 (475)
Q Consensus 321 l~~~~~~~g~~~~a~~~~~~m 341 (475)
+.....+.|.++.|.......
T Consensus 419 la~lA~~~g~~~~aI~a~~~~ 439 (450)
T d1qsaa1 419 LARYAFNNQWWDLSVQATIAG 439 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHCCChhHHHHHHHHH
Confidence 888889999999998777554
|