Citrus Sinensis ID: 038565

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLPTQIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT
Secondary Structure (PSIPRED)
cccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHcccccEEccccccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mggsspcasckLLRRRCAkdcvfapyfpsddpqkfAMVHKvfgasnelpvhqrADAVSSLVYEanarvrdpvygCVGAISYLQNQVSQLQMQLAVAQAEILCIQmqqdppavslptqidhhqdhdrslllscsninpQLLAagfassssnaiqdplkkeslwt
Flexible Loop (DISEMBL)
MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLPTQIDHHQDHDRSLLLSCSNINPQLLAAGfassssnaiqdplkkeslwt
Low Complexity Region (SEG)
MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLPTQIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT
Disordered region (IsUnstruct)
*******ASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ*********************LLLSCSNINPQLLA**********************
Disordered Region (DISOPRED)
****SPC*SCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILC******************************************************KKESLWT
Disordered Region (DISEMBL)
MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLPTQIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT
Disordered Region (DISPRO)
***SSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQD*******************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASNELPVHQRADAVSSLVYEANARVRDPVYGCVGAxxxxxxxxxxxxxxxxxxxxxILCIQMQQDPPAVSLPTQIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q8LBW3	193	LOB domain-containing pro	yes	no	0.981	0.829	0.642	8e-56
Q9SHE9	172	LOB domain-containing pro	no	no	0.650	0.616	0.714	3e-37
Q9LQR0	190	LOB domain-containing pro	no	no	0.932	0.8	0.496	3e-37
Q9SK08	232	LOB domain-containing pro	no	no	0.631	0.443	0.633	1e-35
Q9SA51	165	LOB domain-containing pro	no	no	0.760	0.751	0.542	4e-35
Q9FML4	186	Protein LATERAL ORGAN BOU	no	no	0.595	0.521	0.650	2e-33
Q9FKZ3	313	LOB domain-containing pro	no	no	0.595	0.309	0.631	3e-32
Q8L8Q3	159	LOB domain-containing pro	no	no	0.601	0.616	0.605	5e-32
Q32SG3	260	LOB domain-containing pro	N/A	no	0.705	0.442	0.578	6e-32
O64836	311	LOB domain-containing pro	no	no	0.601	0.315	0.576	7e-32

>sp|Q8LBW3|LBD12_ARATH LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2

 Score =  215 bits (548), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 122/190 (64%), Positives = 138/190 (72%), Gaps = 30/190 (15%)

Query: 3   GSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADA 56
           GSSPCASCKLLRRRCAKDC+FAPYFP DDP KFA+VHKVFGASN      ELPVHQRADA
Sbjct: 5   GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query: 57  VSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLPT 116
           V+SLV+EANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +P   S   
Sbjct: 65  VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query: 117 QIDHHQDHDRSLLLSCSN----------------INPQLLAAGFASSSS-------NAIQ 153
            ++  QDH ++LLL+ +N                ++     + FAS SS         +Q
Sbjct: 125 VLELDQDH-KALLLNNNNINNCNTNNNNNNFGYAMSSGQFNSNFASPSSIMQMQMQMQMQ 183

Query: 154 DPLKKESLWT 163
           DPLK+ESLWT
Sbjct: 184 DPLKQESLWT 193

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SHE9|LBD4_ARATH LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1

 Score =  154 bits (389), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 80/112 (71%), Positives = 97/112 (86%), Gaps = 6/112 (5%)

Query: 2   GGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRAD 55
           G +SPCA+CKLLRRRCA+DCVF+PYFP+D+PQKFA VH+VFGASN      ELP+HQR D
Sbjct: 9   GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query: 56  AVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 107
           AVSS+VYEANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++Q
Sbjct: 69  AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQR0|LBD1_ARATH LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1

 Score =  154 bits (389), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 104/165 (63%), Gaps = 13/165 (7%)

Query: 5   SPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAVS 58
           SPCA+CK+LRRRCA+ CV APYFP  DP KF + H+VFGASN      ELP  QR DAV+
Sbjct: 32  SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query: 59  SLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLPTQI 118
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++ +Q Q+    + L   +
Sbjct: 92  SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRS-NLLELIYNM 150

Query: 119 DHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT 163
           D  Q  ++       N++ +    GF    SN     L  + LWT
Sbjct: 151 DQQQKQEQ------DNMSFESNDLGFLEDKSNTNSSMLWWDPLWT 189

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK08|LBD11_ARATH LOB domain-containing protein 11 OS=Arabidopsis thaliana GN=LBD11 PE=2 SV=2

 Score =  148 bits (374), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 69/109 (63%), Positives = 83/109 (76%), Gaps = 6/109 (5%)

Query: 5   SPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAVS 58
           SPCA+CK+LRRRCA  CV APYFP  DP KF + H+VFGASN      ELP  QR DAV+
Sbjct: 54  SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query: 59  SLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 107
           S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++ +Q+Q+
Sbjct: 114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SA51|LBD3_ARATH LOB domain-containing protein 3 OS=Arabidopsis thaliana GN=LBD3 PE=2 SV=1

 Score =  146 bits (369), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 76/140 (54%), Positives = 96/140 (68%), Gaps = 16/140 (11%)

Query: 5   SPCASCKLLRRRCAKD-CVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAV 57
           SPCA CKLLRR+C KD CVFAPYFP+ +P KFA+VHK+FGASN      EL  + R+DAV
Sbjct: 13  SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query: 58  SSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCI----QMQQDPP--- 110
            S+VYEANAR++DPVYGCVG IS L  Q+  LQ QLA AQAE++ I    ++   PP   
Sbjct: 73  DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKPPPYT 132

Query: 111 --AVSLPTQIDHHQDHDRSL 128
              V+ P+  D + D D ++
Sbjct: 133 ASTVTFPSNKDFYSDIDMAV 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FML4|LOB_ARATH Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1

 Score =  141 bits (356), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 79/103 (76%), Gaps = 6/103 (5%)

Query: 4   SSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAV 57
           +SPCA+CK LRR+C   C+FAPYFP ++P KFA VHK+FGASN      EL  HQR DAV
Sbjct: 9   NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query: 58  SSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 100
           +SL YEA ARVRDPVYGCVGAISYLQ QV +LQ +L  A A++
Sbjct: 69  NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

Not known; ectopic expression of LOB leads to alterations in the size and shape of leaves and floral organs and causes male and female sterility.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKZ3|LBD36_ARATH LOB domain-containing protein 36 OS=Arabidopsis thaliana GN=LBD36 PE=2 SV=1

 Score =  137 bits (345), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 65/103 (63%), Positives = 78/103 (75%), Gaps = 6/103 (5%)

Query: 4   SSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGAS------NELPVHQRADAV 57
           SSPCA+CK LRR+C ++CVFAPYFP D PQKFA VHKVFGAS      NEL  +QR DAV
Sbjct: 5   SSPCAACKFLRRKCTQECVFAPYFPPDQPQKFAFVHKVFGASNVAKLLNELASNQREDAV 64

Query: 58  SSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 100
           +SL YEA AR+RDPVYGCVG IS LQ+++ Q+   L  A+ E+
Sbjct: 65  NSLFYEAEARLRDPVYGCVGLISILQHRLKQVNHDLENAKKEL 107

Controls the proximal-distal patterning in petals and the adaxial-abaxial determination of leaves. Involved in the repression of the homeobox gene BP.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8Q3|LBD25_ARATH LOB domain-containing protein 25 OS=Arabidopsis thaliana GN=LBD25 PE=2 SV=3

 Score =  136 bits (343), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 79/104 (75%), Gaps = 6/104 (5%)

Query: 4   SSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAV 57
           +SPCA+CK LRR+C  DCVFAPYFP ++P KFA VH++FGASN      E+  HQR DAV
Sbjct: 37  NSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAV 96

Query: 58  SSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 101
           +SL YEA AR++DPVYGCVGAIS LQ QV +LQ +L    A+++
Sbjct: 97  NSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140

Arabidopsis thaliana (taxid: 3702)

>sp|Q32SG3|LBD6_MAIZE LOB domain-containing protein 6 OS=Zea mays GN=LBD6 PE=1 SV=1

 Score =  136 bits (342), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/121 (57%), Positives = 82/121 (67%), Gaps = 6/121 (4%)

Query: 2   GGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGAS------NELPVHQRAD 55
           G  SPCA+CK LRR+C  DCVFAPYFP D+PQKF  VH+VFGAS      NEL   QR D
Sbjct: 29  GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQRED 88

Query: 56  AVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLP 115
           AV+SL YEA+ R+RDPVYGCVG IS LQ+ + QLQ  LA A+ E+   Q      A + P
Sbjct: 89  AVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAP 148

Query: 116 T 116
           T
Sbjct: 149 T 149

Promotes the switch from proliferation to differentiation in the embryo sac. Negative regulator of cell proliferation in the adaxial side of leaves. Regulates the formation of a symmetric lamina and the establishment of venation. Interacts directly with RS2 (rough sheath 2) to repress some knox homeobox genes.

Zea mays (taxid: 4577)

>sp|O64836|LBD10_ARATH LOB domain-containing protein 10 OS=Arabidopsis thaliana GN=LBD10 PE=2 SV=1

 Score =  136 bits (342), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 60/104 (57%), Positives = 78/104 (75%), Gaps = 6/104 (5%)

Query: 4   SSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGAS------NELPVHQRADAV 57
           S+PCA+CKLLRR+C ++CVFAPYFP  +PQKF  VH+VFGAS      N+LP  QR D V
Sbjct: 3   STPCAACKLLRRKCTQECVFAPYFPPTNPQKFIFVHRVFGASNVTKILNDLPPDQREDTV 62

Query: 58  SSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 101
           +SL YEA AR+RDP+YGCVG IS+LQ  + ++Q  L  A+ E++
Sbjct: 63  NSLFYEAEARIRDPIYGCVGLISFLQQYLKKIQQDLLTAKEELV 106

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
147826932	163	hypothetical protein VITISV_026576 [Viti	0.963	0.963	0.792	2e-65
359478637	163	PREDICTED: LOB domain-containing protein	0.963	0.963	0.792	2e-65
224055395	163	predicted protein [Populus trichocarpa]	0.963	0.963	0.769	7e-65
255559521	173	LOB domain-containing protein, putative	0.987	0.930	0.727	2e-60
224112441	164	predicted protein [Populus trichocarpa]	0.938	0.932	0.738	2e-58
356537602	172	PREDICTED: LOB domain-containing protein	0.975	0.924	0.727	2e-58
224098730	164	predicted protein [Populus trichocarpa]	0.926	0.920	0.741	5e-58
356565988	172	PREDICTED: LOB domain-containing protein	0.975	0.924	0.721	6e-57
147862164	171	hypothetical protein VITISV_019140 [Viti	0.981	0.935	0.698	3e-56
359486478	212	PREDICTED: LOB domain-containing protein	0.981	0.754	0.698	3e-56

>gi|147826932|emb|CAN68873.1| hypothetical protein VITISV_026576 [Vitis vinifera]

 Score =  253 bits (646), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/169 (79%), Positives = 143/169 (84%), Gaps = 12/169 (7%)

Query: 1   MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRA 54
           MGGSSPCASCKLLRRRCAKDC+FAPYFPSDDP KFA+VHKVFGASN      ELPVHQR 
Sbjct: 1   MGGSSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRV 60

Query: 55  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSL 114
           DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ EILCIQMQQ+ PA  L
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQTEILCIQMQQEEPA--L 118

Query: 115 PTQIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT 163
           PTQ+D  QD ++SLLLS ++ N       FA SSSN IQDPLK+ESLWT
Sbjct: 119 PTQMD--QD-EKSLLLSNNSFNNLQHYLSFA-SSSNVIQDPLKRESLWT 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478637|ref|XP_002278121.2| PREDICTED: LOB domain-containing protein 12-like [Vitis vinifera] gi|297745838|emb|CBI15894.3| unnamed protein product [Vitis vinifera]

 Score =  253 bits (645), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 134/169 (79%), Positives = 143/169 (84%), Gaps = 12/169 (7%)

Query: 1   MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRA 54
           MGGSSPCASCKLLRRRCAKDC+FAPYFPSDDP KFA+VHKVFGASN      ELPVHQR 
Sbjct: 1   MGGSSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRI 60

Query: 55  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSL 114
           DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ EILCIQMQQ+ PA  L
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQTEILCIQMQQEEPA--L 118

Query: 115 PTQIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT 163
           PTQ+D  QD ++SLLLS ++ N       FA SSSN IQDPLK+ESLWT
Sbjct: 119 PTQMD--QD-EKSLLLSNNSFNNLQHYLSFA-SSSNVIQDPLKRESLWT 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055395|ref|XP_002298499.1| predicted protein [Populus trichocarpa] gi|222845757|gb|EEE83304.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (641), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 130/169 (76%), Positives = 140/169 (82%), Gaps = 12/169 (7%)

Query: 1   MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRA 54
           M GSSPCASCKLLRRRCAKDC+FAPYFPSDDP KFA+VHK+FGASN      E+P+HQRA
Sbjct: 1   MAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKIFGASNVSKMLQEIPIHQRA 60

Query: 55  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSL 114
           DAV SLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ+P   +L
Sbjct: 61  DAVGSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQEP---NL 117

Query: 115 PTQIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT 163
           PTQ+D  QD    LL SC+N N       FA SSSN IQDPLK+ESLWT
Sbjct: 118 PTQLD--QDDKSLLLASCNNFNSIPQYFNFA-SSSNVIQDPLKRESLWT 163

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559521|ref|XP_002520780.1| LOB domain-containing protein, putative [Ricinus communis] gi|223539911|gb|EEF41489.1| LOB domain-containing protein, putative [Ricinus communis]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 123/169 (72%), Positives = 136/169 (80%), Gaps = 8/169 (4%)

Query: 1   MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRA 54
           MGG+SPCASCKLLRRRCAKDC+FAPYFPSDDP KFA+VHKVFGASN      ELP+HQRA
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPIHQRA 60

Query: 55  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSL 114
           DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ + PAV +
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNE-PAVVM 119

Query: 115 PT-QIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLW 162
           PT QI+H+ D D    L   N  P        +SSS+ I D LK+ES++
Sbjct: 120 PTPQIEHNDDDDAKSFLYQQNTLPHHHQYLNFASSSSVIHDSLKRESIF 168

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224112441|ref|XP_002316191.1| predicted protein [Populus trichocarpa] gi|222865231|gb|EEF02362.1| predicted protein [Populus trichocarpa]

 Score =  230 bits (586), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 124/168 (73%), Positives = 134/168 (79%), Gaps = 15/168 (8%)

Query: 1   MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRA 54
           MGG+SPCASCKLLRRRCAKDC+F+PYFPSDDP KFA+VHKVFGASN      ELPVHQRA
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFSPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 55  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSL 114
           DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +P    +
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQHEP---VM 117

Query: 115 PTQIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLW 162
           PT      D D+S LL   N   Q L  G   SSSNAI D LK+ES++
Sbjct: 118 PTS-QMGPDDDKSFLL--QNSLSQYLNYG---SSSNAIHDSLKRESIF 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537602|ref|XP_003537315.1| PREDICTED: LOB domain-containing protein 12-like [Glycine max]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 128/176 (72%), Positives = 143/176 (81%), Gaps = 17/176 (9%)

Query: 1   MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRA 54
           MGG+SPCASCKLLRRRC+KDC+FAPYFPSDDP+KF++VHKVFGASN      ELP+HQRA
Sbjct: 1   MGGTSPCASCKLLRRRCSKDCIFAPYFPSDDPRKFSIVHKVFGASNISKMLQELPIHQRA 60

Query: 55  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSL 114
           DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQ EILCIQMQQ  P  +L
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQTEILCIQMQQQEP--TL 118

Query: 115 PTQIDHHQDHDRSLLLSCSN---INPQLLA-AGFASSSSNAIQD---PLKKESLWT 163
            TQ+   QD D+S+LLS +N   + PQ L     +SSSSN  QD   PLK+ES WT
Sbjct: 119 ATQL-VDQD-DKSMLLSVNNNYEMLPQFLKFPSSSSSSSNVFQDPHEPLKRESFWT 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224098730|ref|XP_002311246.1| predicted protein [Populus trichocarpa] gi|222851066|gb|EEE88613.1| predicted protein [Populus trichocarpa]

 Score =  228 bits (582), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 126/170 (74%), Positives = 137/170 (80%), Gaps = 19/170 (11%)

Query: 1   MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRA 54
           MGG+SPCASCKLLRRRCAKDC+FAPYFPSDDP KFA+VHKVFGASN      ELPVHQRA
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVHQRA 60

Query: 55  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSL 114
           DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +P    +
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQHEP---VM 117

Query: 115 PT-QIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQ-DPLKKESLW 162
           PT Q+D     D+S LL   N  PQ L  G   SSSN IQ D LK+E+++
Sbjct: 118 PTPQMD---PEDKSFLL--QNSLPQYLNFG---SSSNVIQYDSLKRETIF 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356565988|ref|XP_003551217.1| PREDICTED: LOB domain-containing protein 12-like [Glycine max]

 Score =  225 bits (573), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 127/176 (72%), Positives = 143/176 (81%), Gaps = 17/176 (9%)

Query: 1   MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRA 54
           MGG+SPCASCKLLRRRC+K+C+FAPYFPSDDP+KFA+VHKVFGASN      ELP+HQRA
Sbjct: 1   MGGTSPCASCKLLRRRCSKECIFAPYFPSDDPRKFAIVHKVFGASNISKMLQELPIHQRA 60

Query: 55  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSL 114
           DAVSSLVYEANARVRDPVYG VGAISYLQ+QVSQLQMQLAVAQAEILCIQMQQ  P  +L
Sbjct: 61  DAVSSLVYEANARVRDPVYGSVGAISYLQSQVSQLQMQLAVAQAEILCIQMQQQEP--TL 118

Query: 115 PTQIDHHQDHDRSLLLSCSN---INPQLLA-AGFASSSSNAIQD---PLKKESLWT 163
            TQ+   QD D+S+LLS +N   + PQ L     +SSSSN  QD   PLK+ES WT
Sbjct: 119 ATQL-VDQD-DKSMLLSVNNNYEMLPQFLNFPSSSSSSSNIFQDPHEPLKRESFWT 172

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147862164|emb|CAN82602.1| hypothetical protein VITISV_019140 [Vitis vinifera]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 128/169 (75%), Gaps = 9/169 (5%)

Query: 1   MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRA 54
           MGG+SPCASCKLLRRRCAKDC+FAPYFPSDDP KF +VHKVFGASN      ELPVHQRA
Sbjct: 1   MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFXIVHKVFGASNVSKMLQELPVHQRA 60

Query: 55  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSL 114
           DAVSSLVYEANARVRDPVYGCVGAISYLQ QVSQLQMQLAVAQAEI CIQMQQ+   +  
Sbjct: 61  DAVSSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMQLAVAQAEIFCIQMQQEQVEIPA 120

Query: 115 PTQIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT 163
             Q     D D        +  P+ L   FASSSS  I D LK+ESL++
Sbjct: 121 AHQTXAAGDGDDGKSFFLHDALPEYL--NFASSSS-VIHDSLKRESLFS 166

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486478|ref|XP_002273648.2| PREDICTED: LOB domain-containing protein 12-like [Vitis vinifera]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 118/169 (69%), Positives = 129/169 (76%), Gaps = 9/169 (5%)

Query: 1   MGGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRA 54
           MGG+SPCASCKLLRRRCAKDC+FAPYFPSDDP KF++VHKVFGASN      ELPVHQRA
Sbjct: 42  MGGNSPCASCKLLRRRCAKDCIFAPYFPSDDPHKFSIVHKVFGASNVSKMLQELPVHQRA 101

Query: 55  DAVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSL 114
           DAVSSLVYEANARVRDPVYGCVGAISYLQ QVSQLQMQLAVAQAEI CIQMQQ+   +  
Sbjct: 102 DAVSSLVYEANARVRDPVYGCVGAISYLQTQVSQLQMQLAVAQAEIFCIQMQQEQVEIPA 161

Query: 115 PTQIDHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT 163
             Q     D D        +  P+ L   FASSSS  I D LK+ESL++
Sbjct: 162 AHQTAAAGDGDDGKSFFLHDALPEYL--NFASSSS-VIHDSLKRESLFS 207

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2060842	193	ASL5 [Arabidopsis thaliana (ta	0.815	0.689	0.778	2.7e-52
TAIR|locus:2197500	172	LBD4 "LOB domain-containing pr	0.650	0.616	0.714	6.8e-40
TAIR|locus:2026611	190	LBD1 "LOB domain-containing pr	0.932	0.8	0.503	8.3e-35
TAIR|locus:2032931	165	ASL9 "ASYMMETRIC LEAVES 2-like	0.760	0.751	0.542	8.5e-33
TAIR|locus:2056578	232	LBD11 "LOB domain-containing p	0.631	0.443	0.633	1.1e-32
TAIR|locus:2161982	186	LOB "LATERAL ORGAN BOUNDARIES"	0.595	0.521	0.650	7.7e-32
TAIR|locus:2061828	224	LBD15 "LOB domain-containing p	0.687	0.5	0.567	4.2e-31
TAIR|locus:2034163	199	AS2 "ASYMMETRIC LEAVES 2" [Ara	0.595	0.487	0.640	8.8e-31
UNIPROTKB|Q32SG3	260	LBD6 "LOB domain-containing pr	0.705	0.442	0.578	1.1e-30
TAIR|locus:2089184	159	LBD25 "LOB domain-containing p	0.601	0.616	0.605	1.8e-30

TAIR|locus:2060842 ASL5 [Arabidopsis thaliana (taxid:3702)]

 Score = 542 (195.9 bits), Expect = 2.7e-52, P = 2.7e-52
 Identities = 109/140 (77%), Positives = 120/140 (85%)

Query:     3 GSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADA 56
             GSSPCASCKLLRRRCAKDC+FAPYFP DDP KFA+VHKVFGASN      ELPVHQRADA
Sbjct:     5 GSSPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADA 64

Query:    57 VSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLPT 116
             V+SLV+EANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQ +P   S   
Sbjct:    65 VNSLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQNEPTLQSHHQ 124

Query:   117 QIDHHQDHDRSLLLSCSNIN 136
              ++  QDH ++LLL+ +NIN
Sbjct:   125 VLELDQDH-KALLLNNNNIN 143

GO:0005634 "nucleus" evidence=ISM

GO:0003677 "DNA binding" evidence=TAS

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0010016 "shoot system morphogenesis" evidence=IMP

TAIR|locus:2197500 LBD4 "LOB domain-containing protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 80/112 (71%), Positives = 97/112 (86%)

Query:     2 GGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRAD 55
             G +SPCA+CKLLRRRCA+DCVF+PYFP+D+PQKFA VH+VFGASN      ELP+HQR D
Sbjct:     9 GAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGD 68

Query:    56 AVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 107
             AVSS+VYEANARVRDPVYGCVGAIS LQ Q+  LQ QLA+AQAE++ ++++Q
Sbjct:    69 AVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQ 120

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2026611 LBD1 "LOB domain-containing protein 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 8.3e-35, P = 8.3e-35
 Identities = 83/165 (50%), Positives = 103/165 (62%)

Query:     5 SPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAVS 58
             SPCA+CK+LRRRCA+ CV APYFP  DP KF + H+VFGASN      ELP  QR DAV+
Sbjct:    32 SPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 91

Query:    59 SLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLPTQI 118
             S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA AQ E++ +Q Q+    + L   +
Sbjct:    92 SMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVNMQFQRSN-LLELIYNM 150

Query:   119 DHHQDHDRSLLLSCSNINPQLLAAGFASSSSNAIQDPLKKESLWT 163
             D  Q  ++  +   SN        GF    SN     L  + LWT
Sbjct:   151 DQQQKQEQDNMSFESN------DLGFLEDKSNTNSSMLWWDPLWT 189

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2032931 ASL9 "ASYMMETRIC LEAVES 2-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
 Identities = 76/140 (54%), Positives = 96/140 (68%)

Query:     5 SPCASCKLLRRRCAKD-CVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAV 57
             SPCA CKLLRR+C KD CVFAPYFP+ +P KFA+VHK+FGASN      EL  + R+DAV
Sbjct:    13 SPCAGCKLLRRKCVKDSCVFAPYFPAKEPYKFAIVHKIFGASNVNKMLQELSENHRSDAV 72

Query:    58 SSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQ----MQQDPP--- 110
              S+VYEANAR++DPVYGCVG IS L  Q+  LQ QLA AQAE++ I+    +   PP   
Sbjct:    73 DSMVYEANARIQDPVYGCVGTISSLHRQLETLQTQLAFAQAELIHIRTLHRIHTKPPPYT 132

Query:   111 --AVSLPTQIDHHQDHDRSL 128
                V+ P+  D + D D ++
Sbjct:   133 ASTVTFPSNKDFYSDIDMAV 152

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0010089 "xylem development" evidence=RCA

GO:0044036 "cell wall macromolecule metabolic process" evidence=RCA

TAIR|locus:2056578 LBD11 "LOB domain-containing protein 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
 Identities = 69/109 (63%), Positives = 83/109 (76%)

Query:     5 SPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAVS 58
             SPCA+CK+LRRRCA  CV APYFP  DP KF + H+VFGASN      ELP  QR DAV+
Sbjct:    54 SPCAACKILRRRCADKCVLAPYFPPTDPAKFTIAHRVFGASNIIKFLQELPESQRTDAVN 113

Query:    59 SLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQ 107
             S+VYEA AR+RDPVYGC GAI +LQ QVS+LQ QLA  Q E++ +Q+Q+
Sbjct:   114 SMVYEAGARMRDPVYGCAGAIYHLQRQVSELQAQLAKTQVELVGMQLQR 162

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161982 LOB "LATERAL ORGAN BOUNDARIES" [Arabidopsis thaliana (taxid:3702)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 67/103 (65%), Positives = 79/103 (76%)

Query:     4 SSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAV 57
             +SPCA+CK LRR+C   C+FAPYFP ++P KFA VHK+FGASN      EL  HQR DAV
Sbjct:     9 NSPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAV 68

Query:    58 SSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 100
             +SL YEA ARVRDPVYGCVGAISYLQ QV +LQ +L  A A++
Sbjct:    69 NSLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADL 111

GO:0005634 "nucleus" evidence=ISM

GO:0010199 "organ boundary specification between lateral organs and the meristem" evidence=IMP

TAIR|locus:2061828 LBD15 "LOB domain-containing protein 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 67/118 (56%), Positives = 86/118 (72%)

Query:     5 SPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAVS 58
             +PCA+CKLLRRRCA++C F+PYF   +P KFA VHKVFGASN      E+P  QRADA +
Sbjct:    44 TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAAN 103

Query:    59 SLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLPT 116
             SLVYEAN R+RDPVYGC+GAIS LQ QV  LQ +L   ++EIL  + ++    + +P+
Sbjct:   104 SLVYEANVRLRDPVYGCMGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPS 161

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2034163 AS2 "ASYMMETRIC LEAVES 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 339 (124.4 bits), Expect = 8.8e-31, P = 8.8e-31
 Identities = 66/103 (64%), Positives = 80/103 (77%)

Query:     4 SSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAV 57
             +SPCA+CK LRR+C  +CVFAPYFP D PQKFA VHKVFGASN      EL   QR DAV
Sbjct:     7 NSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQREDAV 66

Query:    58 SSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 100
             +SL YEA+ R+RDPVYGCVG IS LQ+Q+ QLQ+ L+ A++E+
Sbjct:    67 NSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSEL 109

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009799 "specification of symmetry" evidence=IMP

GO:0009954 "proximal/distal pattern formation" evidence=IGI

GO:0048441 "petal development" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0005654 "nucleoplasm" evidence=IDA

GO:0009943 "adaxial/abaxial axis specification" evidence=IMP

UNIPROTKB|Q32SG3 LBD6 "LOB domain-containing protein 6" [Zea mays (taxid:4577)]

 Score = 338 (124.0 bits), Expect = 1.1e-30, P = 1.1e-30
 Identities = 70/121 (57%), Positives = 82/121 (67%)

Query:     2 GGSSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRAD 55
             G  SPCA+CK LRR+C  DCVFAPYFP D+PQKF  VH+VFGASN      EL   QR D
Sbjct:    29 GTGSPCAACKFLRRKCQPDCVFAPYFPPDNPQKFVHVHRVFGASNVTKLLNELHPFQRED 88

Query:    56 AVSSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEILCIQMQQDPPAVSLP 115
             AV+SL YEA+ R+RDPVYGCVG IS LQ+ + QLQ  LA A+ E+   Q      A + P
Sbjct:    89 AVNSLAYEADMRLRDPVYGCVGVISILQHNLRQLQQDLARAKYELSKYQAAAAASASTAP 148

Query:   116 T 116
             T
Sbjct:   149 T 149

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2089184 LBD25 "LOB domain-containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 63/104 (60%), Positives = 79/104 (75%)

Query:     4 SSPCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAV 57
             +SPCA+CK LRR+C  DCVFAPYFP ++P KFA VH++FGASN      E+  HQR DAV
Sbjct:    37 NSPCAACKFLRRKCTSDCVFAPYFPPEEPTKFANVHRIFGASNVSKILHEVAPHQREDAV 96

Query:    58 SSLVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 101
             +SL YEA AR++DPVYGCVGAIS LQ QV +LQ +L    A+++
Sbjct:    97 NSLAYEAEARLKDPVYGCVGAISVLQRQVLRLQRELEETNADLM 140

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBW3	LBD12_ARATH	No assigned EC number	0.6421	0.9815	0.8290	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
pfam03195	101	pfam03195, DUF260, Protein of unknown function DUF	1e-50

>gnl|CDD|190559 pfam03195, DUF260, Protein of unknown function DUF260

 Score =  156 bits (398), Expect = 1e-50
 Identities = 60/101 (59%), Positives = 75/101 (74%), Gaps = 6/101 (5%)

Query: 6   PCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAVSS 59
           PCA+CK LRR+C  DCV APYFP++ P +FA VHK+FGASN       LP  QR DA+ S
Sbjct: 1   PCAACKHLRRKCPPDCVLAPYFPAEQPARFANVHKLFGASNVTKLLKALPPEQRDDAMRS 60

Query: 60  LVYEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEI 100
           L+YEA+AR RDPVYGCVG I  LQ Q+ QLQ +LA+ +A++
Sbjct: 61  LLYEADARARDPVYGCVGVIWSLQQQLEQLQAELALVKAQL 101

Length = 101

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PF03195	101	DUF260: Protein of unknown function DUF260; InterP	100.0

>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function

Probab=100.00  E-value=7.4e-48  Score=288.76  Aligned_cols=95  Identities=71%  Similarity=1.210  Sum_probs=93.1

Q ss_pred             CChhhhhhhcCCCCCCccCCCCCCCChHHHHHHHhhhCCCC------CCCccchHHHHHHHHHHHhccccCCCcccHHHH
Q 038565            6 PCASCKLLRRRCAKDCVFAPYFPSDDPQKFAMVHKVFGASN------ELPVHQRADAVSSLVYEANARVRDPVYGCVGAI   79 (163)
Q Consensus         6 ~CAACK~lRRrC~~~C~lAPYFPa~~~~~F~~vhkvFG~sN------~lp~~~R~~a~~SLvYEA~aR~rDPVyGcvG~I   79 (163)
                      +|||||+|||||+++|+||||||++++++|++||||||++|      .+|+++|+++|+||+|||++|.+||||||+|+|
T Consensus         1 ~CaaCk~lRr~C~~~C~laPyFP~~~~~~F~~vhkvFG~sni~k~L~~~~~~~R~~a~~Sl~yEA~~R~~dPv~Gc~G~i   80 (101)
T PF03195_consen    1 PCAACKHLRRRCSPDCVLAPYFPADQPQRFANVHKVFGVSNISKMLQELPPEQREDAMRSLVYEANARARDPVYGCVGII   80 (101)
T ss_pred             CChHHHHHhCCCCCCCcCCCCCChhHHHHHHHHHHHHchhHHHHHHHhCCccchhhHHHHHHHHHHhhccCCCcchHHHH
Confidence            69999999999999999999999999999999999999999      789999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 038565           80 SYLQNQVSQLQMQLAVAQAEI  100 (163)
Q Consensus        80 ~~Lq~qi~~lq~eL~~~q~el  100 (163)
                      +.|+|||+++++||+.++++|
T Consensus        81 ~~L~~ql~~~~~el~~~~~~l  101 (101)
T PF03195_consen   81 SQLQQQLQQLQAELALVRAQL  101 (101)
T ss_pred             HHHHHHHHHHHHHHHHHHccC
Confidence            999999999999999999875

The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
4dzn_A	33	Coiled-coil peptide CC-PIL; de novo protein; HET:	83.07

>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B

Probab=83.07  E-value=2  Score=25.85  Aligned_cols=28  Identities=25%  Similarity=0.497  Sum_probs=24.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 038565           77 GAISYLQNQVSQLQMQLAVAQAEILCIQ  104 (163)
Q Consensus        77 G~I~~Lq~qi~~lq~eL~~~q~el~~~~  104 (163)
                      |.|..|.++|..|+.|++..+-||+.+.
T Consensus         2 geiaalkqeiaalkkeiaalkfeiaalk   29 (33)
T 4dzn_A            2 GEIAALKQEIAALKKEIAALKFEIAALK   29 (33)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6788999999999999999999988754

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00